Query 011518
Match_columns 484
No_of_seqs 389 out of 2058
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.5E-35 5E-40 276.4 13.9 180 2-191 10-190 (196)
2 2cjk_A Nuclear polyadenylated 100.0 5.7E-35 2E-39 265.6 9.4 167 3-185 1-167 (167)
3 2qfj_A FBP-interacting repress 100.0 3.3E-34 1.1E-38 271.3 11.7 180 4-188 27-209 (216)
4 4f02_A Polyadenylate-binding p 100.0 6.4E-34 2.2E-38 271.4 13.7 167 4-186 14-183 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 3.7E-33 1.3E-37 252.4 16.1 163 6-183 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.7E-33 2.3E-37 251.8 14.7 162 4-181 2-168 (168)
7 2yh0_A Splicing factor U2AF 65 100.0 1.7E-32 5.8E-37 256.1 17.3 184 3-186 2-196 (198)
8 1fxl_A Paraneoplastic encephal 100.0 1.5E-32 5E-37 248.7 14.9 161 5-181 2-167 (167)
9 2g4b_A Splicing factor U2AF 65 100.0 5.8E-32 2E-36 246.9 15.1 164 3-182 2-172 (172)
10 3nmr_A Cugbp ELAV-like family 100.0 7.4E-32 2.5E-36 246.3 14.5 164 3-182 1-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 1.4E-31 4.8E-36 245.6 16.4 162 3-184 11-174 (175)
12 3smz_A Protein raver-1, ribonu 100.0 1.1E-29 3.9E-34 251.2 15.0 170 3-186 93-266 (284)
13 3tyt_A Heterogeneous nuclear r 100.0 7.7E-30 2.6E-34 242.7 12.8 171 4-181 3-204 (205)
14 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-29 3.9E-34 252.2 13.8 171 4-185 116-292 (292)
15 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-29 7.5E-34 248.9 15.5 172 3-182 7-281 (282)
16 1qm9_A Polypyrimidine tract-bi 100.0 2E-29 6.9E-34 236.2 14.1 172 3-184 1-197 (198)
17 2adc_A Polypyrimidine tract-bi 100.0 6.4E-29 2.2E-33 239.4 17.0 172 3-184 32-228 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-28 5.4E-33 243.9 13.6 160 2-187 38-200 (292)
19 3sde_A Paraspeckle component 1 100.0 3.4E-28 1.2E-32 238.9 14.4 157 3-188 20-183 (261)
20 3smz_A Protein raver-1, ribonu 100.0 5E-28 1.7E-32 239.4 14.6 156 3-187 20-178 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 7.3E-23 2.5E-27 185.5 13.6 150 34-188 2-154 (158)
22 2i2y_A Fusion protein consists 99.8 5.3E-21 1.8E-25 172.2 11.8 136 44-185 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.8 2.7E-21 9.4E-26 166.7 6.4 108 4-121 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 3.7E-19 1.3E-23 149.5 8.9 80 104-183 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.8 8.1E-20 2.8E-24 192.4 5.7 168 21-188 8-186 (437)
26 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.2E-19 1.8E-23 160.1 10.1 86 103-188 37-123 (156)
27 4fxv_A ELAV-like protein 1; RN 99.8 3.7E-19 1.3E-23 149.5 6.7 80 3-82 17-98 (99)
28 1u6f_A Tcubp1, RNA-binding pro 99.8 3.3E-18 1.1E-22 151.7 12.6 88 101-188 38-126 (139)
29 2lxi_A RNA-binding protein 10; 99.8 5.9E-19 2E-23 145.9 7.2 82 5-86 1-86 (91)
30 2lea_A Serine/arginine-rich sp 99.8 6.8E-19 2.3E-23 156.2 7.4 87 102-188 44-131 (135)
31 2lxi_A RNA-binding protein 10; 99.8 5.5E-19 1.9E-23 146.0 6.1 83 105-187 1-86 (91)
32 2dnz_A Probable RNA-binding pr 99.8 3.5E-18 1.2E-22 141.3 10.7 85 103-187 3-88 (95)
33 2dgs_A DAZ-associated protein 99.8 3E-18 1E-22 143.1 10.3 88 101-189 6-94 (99)
34 3s8s_A Histone-lysine N-methyl 99.7 2.3E-18 8E-23 147.5 9.3 83 103-185 4-87 (110)
35 1x5s_A Cold-inducible RNA-bind 99.7 3.3E-18 1.1E-22 143.4 9.9 88 101-188 8-96 (102)
36 2cpz_A CUG triplet repeat RNA- 99.7 4.6E-18 1.6E-22 145.9 10.8 87 102-188 22-109 (115)
37 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.3E-18 1.1E-22 143.4 9.7 88 102-189 9-97 (102)
38 2dnm_A SRP46 splicing factor; 99.7 3.1E-18 1.1E-22 143.9 9.1 88 101-188 9-97 (103)
39 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.6E-18 9E-23 157.2 9.3 138 52-189 11-157 (165)
40 1x5u_A Splicing factor 3B subu 99.7 5.1E-18 1.7E-22 143.0 10.3 88 101-188 11-99 (105)
41 1whw_A Hypothetical protein ri 99.7 6.6E-18 2.3E-22 140.8 10.7 86 102-187 5-91 (99)
42 2cqd_A RNA-binding region cont 99.7 6.1E-18 2.1E-22 145.4 10.6 87 101-187 13-99 (116)
43 2cq0_A Eukaryotic translation 99.7 6.5E-18 2.2E-22 142.0 10.1 88 101-188 11-99 (103)
44 1x5t_A Splicing factor 3B subu 99.7 4.7E-18 1.6E-22 140.7 8.7 86 103-188 3-90 (96)
45 2lkz_A RNA-binding protein 5; 99.7 3.7E-18 1.3E-22 142.6 7.8 82 102-183 6-94 (95)
46 2dh8_A DAZ-associated protein 99.7 5.6E-18 1.9E-22 142.9 8.9 88 101-189 12-100 (105)
47 2dgp_A Bruno-like 4, RNA bindi 99.7 9.5E-18 3.2E-22 141.6 10.1 88 101-188 9-100 (106)
48 2lkz_A RNA-binding protein 5; 99.7 2.4E-18 8.3E-23 143.7 6.4 81 2-82 6-94 (95)
49 2cph_A RNA binding motif prote 99.7 1.2E-17 4E-22 141.2 10.6 88 101-188 11-101 (107)
50 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-17 4.4E-22 143.0 11.0 88 101-188 11-99 (115)
51 2do4_A Squamous cell carcinoma 99.7 1.4E-17 4.7E-22 139.2 10.7 84 102-186 14-98 (100)
52 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-17 4.3E-22 140.6 10.4 85 102-188 12-98 (104)
53 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.8E-18 2.7E-22 136.7 8.7 82 103-184 4-86 (87)
54 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6.2E-22 140.9 11.1 89 101-189 11-106 (111)
55 2cqg_A TDP-43, TAR DNA-binding 99.7 2E-17 6.9E-22 139.0 11.2 90 101-191 11-100 (103)
56 1x5s_A Cold-inducible RNA-bind 99.7 4.9E-18 1.7E-22 142.4 7.3 86 1-86 8-95 (102)
57 2d9p_A Polyadenylate-binding p 99.7 1.7E-17 5.7E-22 139.5 10.6 87 101-189 11-98 (103)
58 3md1_A Nuclear and cytoplasmic 99.7 1.1E-17 3.7E-22 134.7 8.9 81 105-185 1-82 (83)
59 3q2s_C Cleavage and polyadenyl 99.7 1.9E-18 6.5E-23 166.9 5.3 82 104-185 67-151 (229)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.5E-18 1.5E-22 142.6 6.9 86 1-86 8-95 (102)
61 3p5t_L Cleavage and polyadenyl 99.7 3.3E-18 1.1E-22 140.6 5.9 83 106-188 2-87 (90)
62 3s8s_A Histone-lysine N-methyl 99.7 3E-18 1E-22 146.9 5.9 83 3-85 4-88 (110)
63 2cpf_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 139.1 9.1 86 103-188 3-92 (98)
64 2cqc_A Arginine/serine-rich sp 99.7 1.9E-17 6.5E-22 136.7 10.3 83 101-183 11-94 (95)
65 2dng_A Eukaryotic translation 99.7 1.8E-17 6.3E-22 139.4 10.2 86 101-188 11-97 (103)
66 1whw_A Hypothetical protein ri 99.7 7.7E-18 2.6E-22 140.4 7.7 85 2-86 5-91 (99)
67 2dgs_A DAZ-associated protein 99.7 5.9E-18 2E-22 141.2 7.0 85 2-86 7-92 (99)
68 3ucg_A Polyadenylate-binding p 99.7 3.2E-18 1.1E-22 139.7 5.2 83 1-83 2-85 (89)
69 3s7r_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 136.4 7.8 81 101-181 7-87 (87)
70 2cqg_A TDP-43, TAR DNA-binding 99.7 9.5E-18 3.3E-22 141.0 7.9 85 2-86 12-96 (103)
71 2cq3_A RNA-binding protein 9; 99.7 4.3E-17 1.5E-21 136.9 11.9 87 101-189 11-98 (103)
72 2cpe_A RNA-binding protein EWS 99.7 1.8E-17 6.1E-22 141.7 9.6 86 102-187 12-106 (113)
73 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-17 5E-22 141.5 8.9 86 102-187 23-109 (110)
74 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 143.5 8.4 86 103-188 25-110 (116)
75 2hvz_A Splicing factor, argini 99.7 9.7E-18 3.3E-22 140.4 7.7 99 6-115 1-101 (101)
76 2cpz_A CUG triplet repeat RNA- 99.7 9.2E-18 3.2E-22 144.0 7.7 84 3-86 23-108 (115)
77 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.7E-22 145.1 8.8 87 102-188 19-106 (126)
78 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-17 4.4E-22 143.0 8.5 85 3-87 13-99 (115)
79 2dhg_A TRNA selenocysteine ass 99.7 1.7E-17 5.7E-22 139.6 9.0 88 101-189 5-95 (104)
80 2e5h_A Zinc finger CCHC-type a 99.7 2.1E-17 7.2E-22 136.3 9.4 82 101-182 12-94 (94)
81 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.9E-17 2E-21 136.1 12.2 86 101-188 11-97 (103)
82 2dnh_A Bruno-like 5, RNA bindi 99.7 3.3E-17 1.1E-21 138.0 10.6 85 103-188 13-101 (105)
83 4f25_A Polyadenylate-binding p 99.7 1.6E-17 5.4E-22 143.1 8.8 83 104-188 4-87 (115)
84 2dh8_A DAZ-associated protein 99.7 7.6E-18 2.6E-22 142.1 6.6 85 2-86 13-98 (105)
85 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-17 5.1E-22 141.9 8.4 87 102-188 22-108 (109)
86 1p27_B RNA-binding protein 8A; 99.7 2E-17 6.8E-22 139.6 9.0 83 103-185 21-104 (106)
87 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.9E-17 6.6E-22 133.8 8.5 80 103-182 5-85 (85)
88 1x5t_A Splicing factor 3B subu 99.7 1.3E-17 4.6E-22 138.0 7.6 84 3-86 3-89 (96)
89 1x4a_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 137.9 11.4 84 101-187 18-102 (109)
90 2kxn_B Transformer-2 protein h 99.7 2E-17 6.9E-22 145.6 9.1 86 101-186 42-128 (129)
91 1x4c_A Splicing factor, argini 99.7 4.4E-17 1.5E-21 138.5 10.8 85 101-192 11-101 (108)
92 2dnm_A SRP46 splicing factor; 99.7 1.1E-17 3.9E-22 140.5 6.9 84 3-86 11-96 (103)
93 3s7r_A Heterogeneous nuclear r 99.7 9.4E-18 3.2E-22 136.5 6.2 79 2-80 8-87 (87)
94 1x4h_A RNA-binding protein 28; 99.7 1.7E-17 5.9E-22 141.0 8.1 84 3-86 13-104 (111)
95 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 135.1 6.6 81 1-81 3-85 (85)
96 3p5t_L Cleavage and polyadenyl 99.7 8.1E-18 2.8E-22 138.3 5.7 80 6-85 2-85 (90)
97 2fy1_A RNA-binding motif prote 99.7 3.3E-17 1.1E-21 141.4 9.8 86 102-188 4-90 (116)
98 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5.1E-22 140.1 7.3 84 3-86 13-98 (105)
99 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-17 6.2E-22 139.9 7.8 85 2-86 10-99 (106)
100 2dnz_A Probable RNA-binding pr 99.7 1.6E-17 5.3E-22 137.3 7.1 84 3-86 3-88 (95)
101 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-17 3.7E-22 143.5 6.3 102 3-131 6-109 (115)
102 2div_A TRNA selenocysteine ass 99.7 2.3E-17 8E-22 137.5 8.1 84 102-185 6-95 (99)
103 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.8E-22 135.9 6.0 81 3-83 4-86 (87)
104 2x1f_A MRNA 3'-END-processing 99.7 3E-17 1E-21 136.2 8.7 82 105-186 2-84 (96)
105 2m2b_A RNA-binding protein 10; 99.7 3.1E-17 1.1E-21 144.4 9.0 85 102-187 20-111 (131)
106 2do4_A Squamous cell carcinoma 99.7 1.9E-17 6.5E-22 138.4 7.2 82 3-85 15-98 (100)
107 2cph_A RNA binding motif prote 99.7 2.4E-17 8.1E-22 139.3 7.8 85 2-86 12-100 (107)
108 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-17 5.3E-22 140.3 6.7 83 101-185 11-93 (102)
109 2cpf_A RNA binding motif prote 99.7 1.9E-17 6.6E-22 137.7 7.1 84 3-86 3-91 (98)
110 2cqd_A RNA-binding region cont 99.7 3.2E-17 1.1E-21 140.8 8.7 83 2-85 14-98 (116)
111 3ns6_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 140.5 5.5 83 103-185 4-94 (100)
112 2jrs_A RNA-binding protein 39; 99.7 5E-17 1.7E-21 138.5 9.7 85 101-185 22-107 (108)
113 4a8x_A RNA-binding protein wit 99.7 3E-17 1E-21 133.4 7.8 83 104-186 3-87 (88)
114 2cqp_A RNA-binding protein 12; 99.7 2.5E-17 8.6E-22 137.0 7.5 85 101-185 11-96 (98)
115 2cpy_A RNA-binding protein 12; 99.7 9.5E-18 3.2E-22 144.1 4.9 85 2-87 12-98 (114)
116 2dgx_A KIAA0430 protein; RRM d 99.7 8.5E-17 2.9E-21 133.8 10.5 81 103-186 7-92 (96)
117 2la6_A RNA-binding protein FUS 99.7 5.3E-17 1.8E-21 135.5 9.1 82 101-182 9-99 (99)
118 2hgn_A Heterogeneous nuclear r 99.7 5.1E-18 1.8E-22 151.5 3.1 124 47-186 1-125 (139)
119 2cq0_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 140.3 5.0 83 3-85 13-97 (103)
120 2cpi_A CCR4-NOT transcription 99.7 8.8E-17 3E-21 137.4 10.5 85 102-186 12-103 (111)
121 3md1_A Nuclear and cytoplasmic 99.7 2.3E-17 7.7E-22 132.8 6.3 80 5-84 1-82 (83)
122 1sjq_A Polypyrimidine tract-bi 99.7 4.5E-17 1.6E-21 138.3 8.4 83 102-190 13-98 (105)
123 2khc_A Testis-specific RNP-typ 99.7 4.6E-17 1.6E-21 140.1 8.6 82 101-182 36-118 (118)
124 2rs2_A Musashi-1, RNA-binding 99.7 2.4E-17 8.2E-22 140.6 6.5 84 2-85 22-106 (109)
125 2ywk_A Putative RNA-binding pr 99.7 6.3E-17 2.2E-21 133.7 8.9 82 101-183 12-94 (95)
126 2dgv_A HnRNP M, heterogeneous 99.7 7.5E-17 2.6E-21 132.4 9.2 84 102-187 5-89 (92)
127 2mss_A Protein (musashi1); RNA 99.7 2.4E-17 8.1E-22 130.4 5.9 74 7-80 1-75 (75)
128 3ucg_A Polyadenylate-binding p 99.7 6E-17 2.1E-21 132.0 8.5 81 104-185 5-86 (89)
129 1x4e_A RNA binding motif, sing 99.7 3.4E-17 1.2E-21 132.6 6.9 80 103-182 3-83 (85)
130 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 3.9E-22 141.5 4.3 80 2-82 8-88 (103)
131 2ek1_A RNA-binding protein 12; 99.7 2.3E-17 7.9E-22 136.3 6.0 82 102-183 12-94 (95)
132 2cqc_A Arginine/serine-rich sp 99.7 3.5E-17 1.2E-21 135.1 7.0 80 3-82 13-94 (95)
133 2cpe_A RNA-binding protein EWS 99.7 3.6E-17 1.2E-21 139.7 7.3 85 2-86 12-106 (113)
134 1wg5_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 137.2 8.2 86 101-187 11-97 (104)
135 2dis_A Unnamed protein product 99.7 5.9E-17 2E-21 137.4 8.5 84 3-86 6-95 (109)
136 2do0_A HnRNP M, heterogeneous 99.7 1.4E-16 4.7E-21 136.2 10.9 85 102-187 12-97 (114)
137 1p27_B RNA-binding protein 8A; 99.7 2.9E-17 9.8E-22 138.6 6.4 82 3-84 21-104 (106)
138 1p1t_A Cleavage stimulation fa 99.7 1.6E-17 5.4E-22 139.6 4.8 86 2-87 5-92 (104)
139 2m2b_A RNA-binding protein 10; 99.7 3.6E-17 1.2E-21 144.0 7.2 84 2-86 20-111 (131)
140 2db1_A Heterogeneous nuclear r 99.7 2E-17 6.8E-22 143.2 5.4 83 3-86 15-101 (118)
141 2div_A TRNA selenocysteine ass 99.7 3.4E-17 1.2E-21 136.4 6.6 82 3-84 7-95 (99)
142 1wi8_A EIF-4B, eukaryotic tran 99.7 3.3E-17 1.1E-21 138.0 6.5 83 3-86 13-97 (104)
143 2e5h_A Zinc finger CCHC-type a 99.7 3E-17 1E-21 135.4 6.1 79 3-81 14-94 (94)
144 3ns6_A Eukaryotic translation 99.7 9.9E-18 3.4E-22 140.8 3.2 82 3-84 4-94 (100)
145 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.2E-17 1.1E-21 130.0 5.9 76 106-181 1-76 (77)
146 2x1f_A MRNA 3'-END-processing 99.7 5E-17 1.7E-21 134.9 7.1 83 5-87 2-86 (96)
147 2d9p_A Polyadenylate-binding p 99.7 3.8E-17 1.3E-21 137.3 6.4 83 2-86 12-96 (103)
148 2dng_A Eukaryotic translation 99.7 3.9E-17 1.3E-21 137.3 6.5 82 3-85 13-95 (103)
149 1wg5_A Heterogeneous nuclear r 99.7 3.6E-17 1.2E-21 138.2 6.3 82 3-85 13-96 (104)
150 2dhg_A TRNA selenocysteine ass 99.7 6.9E-17 2.4E-21 135.8 8.0 83 3-86 7-93 (104)
151 2dgw_A Probable RNA-binding pr 99.7 1.1E-16 3.6E-21 131.5 8.9 81 102-185 7-88 (91)
152 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-17 6E-22 140.0 4.2 80 3-84 13-93 (102)
153 2cqp_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 135.9 6.2 81 3-83 13-95 (98)
154 3ulh_A THO complex subunit 4; 99.7 1.2E-16 4E-21 135.1 9.3 81 101-182 25-106 (107)
155 2hgl_A HNRPF protein, heteroge 99.7 3E-17 1E-21 146.1 5.8 83 101-185 40-126 (136)
156 2kxn_B Transformer-2 protein h 99.7 4.7E-17 1.6E-21 143.3 7.0 82 3-84 44-127 (129)
157 1u6f_A Tcubp1, RNA-binding pro 99.7 5.4E-17 1.8E-21 143.7 7.5 84 3-86 40-125 (139)
158 2ek1_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 135.5 5.6 78 4-81 14-93 (95)
159 2cpy_A RNA-binding protein 12; 99.7 6E-17 2E-21 139.1 7.4 84 102-186 12-96 (114)
160 1x4b_A Heterogeneous nuclear r 99.7 2.6E-17 8.9E-22 141.4 5.1 83 4-86 26-109 (116)
161 2dnh_A Bruno-like 5, RNA bindi 99.7 5.3E-17 1.8E-21 136.7 6.9 83 3-86 13-100 (105)
162 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.1E-17 2.8E-21 135.2 8.0 83 2-86 12-96 (103)
163 2do0_A HnRNP M, heterogeneous 99.7 9E-17 3.1E-21 137.4 8.4 82 3-85 13-96 (114)
164 2kt5_A RNA and export factor-b 99.7 3.9E-16 1.3E-20 135.7 12.6 87 101-188 31-118 (124)
165 2fc8_A NCL protein; structure 99.7 1.5E-16 5.3E-21 133.2 9.6 84 101-187 11-95 (102)
166 4a8x_A RNA-binding protein wit 99.7 4.7E-17 1.6E-21 132.2 6.3 82 3-84 2-86 (88)
167 1p1t_A Cleavage stimulation fa 99.7 3.7E-17 1.3E-21 137.3 5.8 85 103-187 6-91 (104)
168 2cq1_A PTB-like protein L; RRM 99.7 2.5E-16 8.4E-21 133.0 10.9 82 103-190 13-97 (101)
169 1fj7_A Nucleolin RBD1, protein 99.7 8E-17 2.7E-21 134.8 7.7 81 4-85 16-97 (101)
170 2ywk_A Putative RNA-binding pr 99.7 5.5E-17 1.9E-21 134.0 6.7 80 2-82 13-94 (95)
171 2cq4_A RNA binding motif prote 99.7 4.9E-17 1.7E-21 139.3 6.6 83 103-186 23-106 (114)
172 2cpx_A Hypothetical protein FL 99.7 6.7E-17 2.3E-21 138.4 7.4 88 102-189 22-110 (115)
173 2cq4_A RNA binding motif prote 99.7 1.2E-17 4E-22 143.1 2.6 83 3-85 23-106 (114)
174 2fy1_A RNA-binding motif prote 99.7 8.7E-17 3E-21 138.8 8.1 83 3-86 5-89 (116)
175 1iqt_A AUF1, heterogeneous nuc 99.7 4E-17 1.4E-21 128.9 5.5 74 7-80 1-75 (75)
176 2dgu_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 131.8 11.3 82 102-191 8-90 (103)
177 1oo0_B CG8781-PA, drosophila Y 99.7 5.1E-17 1.7E-21 138.1 6.3 83 3-85 24-108 (110)
178 2jrs_A RNA-binding protein 39; 99.7 5.9E-17 2E-21 138.1 6.7 82 3-84 24-107 (108)
179 1sjq_A Polypyrimidine tract-bi 99.7 6.9E-17 2.4E-21 137.2 7.0 79 3-87 14-96 (105)
180 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4E-17 1.4E-21 129.4 5.2 74 6-80 1-76 (77)
181 2dnq_A RNA-binding protein 4B; 99.7 2.7E-16 9.2E-21 128.9 10.2 80 101-188 4-84 (90)
182 2dis_A Unnamed protein product 99.7 1.5E-16 5.2E-21 134.8 9.0 86 103-188 6-96 (109)
183 2dnn_A RNA-binding protein 12; 99.7 2.1E-17 7.3E-22 141.5 3.2 82 2-85 13-95 (109)
184 3n9u_C Cleavage and polyadenyl 99.7 8.4E-17 2.9E-21 146.4 7.2 82 104-185 54-138 (156)
185 2khc_A Testis-specific RNP-typ 99.7 4.2E-17 1.5E-21 140.4 5.0 79 3-81 38-118 (118)
186 2cq3_A RNA-binding protein 9; 99.7 1E-16 3.5E-21 134.6 7.2 83 2-86 12-96 (103)
187 2ad9_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 136.0 10.5 82 103-190 29-113 (119)
188 3n9u_C Cleavage and polyadenyl 99.7 5E-17 1.7E-21 147.9 5.4 82 3-84 53-138 (156)
189 1x4e_A RNA binding motif, sing 99.7 4E-17 1.4E-21 132.2 4.2 79 3-81 3-83 (85)
190 2fc9_A NCL protein; structure 99.7 2.9E-16 9.8E-21 131.4 9.6 83 101-187 11-94 (101)
191 3ex7_B RNA-binding protein 8A; 99.7 8.2E-17 2.8E-21 140.2 6.5 85 2-86 19-105 (126)
192 2jwn_A Embryonic polyadenylate 99.7 2.3E-16 7.8E-21 137.0 9.2 82 104-186 35-117 (124)
193 1wex_A Hypothetical protein (r 99.7 5.3E-16 1.8E-20 131.6 11.2 81 102-188 12-95 (104)
194 2lea_A Serine/arginine-rich sp 99.7 8.9E-17 3E-21 142.5 6.6 84 3-86 45-130 (135)
195 2ki2_A SS-DNA binding protein 99.7 4.9E-17 1.7E-21 133.1 4.5 79 6-85 2-82 (90)
196 2dnn_A RNA-binding protein 12; 99.7 9.4E-17 3.2E-21 137.4 6.4 81 103-185 14-94 (109)
197 1x4d_A Matrin 3; structural ge 99.6 4.5E-16 1.5E-20 131.6 10.3 77 103-185 13-93 (102)
198 2jwn_A Embryonic polyadenylate 99.6 9E-17 3.1E-21 139.5 6.1 82 3-84 34-116 (124)
199 2dgw_A Probable RNA-binding pr 99.6 1.1E-16 3.9E-21 131.3 6.3 81 2-84 7-88 (91)
200 1s79_A Lupus LA protein; RRM, 99.6 1.3E-16 4.5E-21 135.0 6.9 80 103-183 9-88 (103)
201 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-16 4E-21 144.6 7.0 83 3-85 37-121 (156)
202 2mss_A Protein (musashi1); RNA 99.6 5.6E-17 1.9E-21 128.2 4.3 75 107-181 1-75 (75)
203 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.7E-17 2.6E-21 135.1 5.3 82 102-185 16-99 (100)
204 2dgv_A HnRNP M, heterogeneous 99.6 1.4E-16 4.8E-21 130.8 6.8 82 2-85 5-88 (92)
205 1wel_A RNA-binding protein 12; 99.6 4E-17 1.4E-21 142.2 3.7 82 3-84 23-105 (124)
206 2la6_A RNA-binding protein FUS 99.6 1.3E-16 4.3E-21 133.2 6.6 79 3-81 11-99 (99)
207 2dha_A FLJ20171 protein; RRM d 99.6 4.5E-17 1.5E-21 142.4 3.9 84 3-87 21-109 (123)
208 1fj7_A Nucleolin RBD1, protein 99.6 5.3E-17 1.8E-21 135.9 4.1 84 103-188 15-99 (101)
209 2dgx_A KIAA0430 protein; RRM d 99.6 1.7E-16 5.9E-21 132.0 7.1 80 3-85 7-92 (96)
210 2db1_A Heterogeneous nuclear r 99.6 1E-16 3.6E-21 138.7 5.9 83 102-185 14-99 (118)
211 2hgl_A HNRPF protein, heteroge 99.6 5.2E-17 1.8E-21 144.5 4.1 81 3-84 42-126 (136)
212 1iqt_A AUF1, heterogeneous nuc 99.6 5E-17 1.7E-21 128.3 3.5 75 107-181 1-75 (75)
213 2ki2_A SS-DNA binding protein 99.6 5E-17 1.7E-21 133.1 3.6 81 106-187 2-83 (90)
214 2lmi_A GRSF-1, G-rich sequence 99.6 6.4E-17 2.2E-21 137.4 4.2 82 3-85 9-94 (107)
215 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.6E-17 2.3E-21 135.5 4.1 81 3-84 17-99 (100)
216 1x5o_A RNA binding motif, sing 99.6 5E-16 1.7E-20 132.8 9.7 82 102-184 22-112 (114)
217 1wf1_A RNA-binding protein RAL 99.6 5.3E-16 1.8E-20 132.0 9.8 76 103-186 25-102 (110)
218 3r27_A HnRNP L, heterogeneous 99.6 8.1E-16 2.8E-20 129.4 10.7 79 102-186 18-99 (100)
219 2err_A Ataxin-2-binding protei 99.6 3.4E-16 1.2E-20 133.4 8.5 83 101-185 25-108 (109)
220 3beg_B Splicing factor, argini 99.6 2.8E-16 9.6E-21 135.3 7.7 82 103-191 14-101 (115)
221 2dgt_A RNA-binding protein 30; 99.6 8.7E-16 3E-20 126.3 10.3 80 101-188 6-86 (92)
222 3ulh_A THO complex subunit 4; 99.6 1.8E-16 6.1E-21 133.9 6.3 78 3-81 27-106 (107)
223 2hgm_A HNRPF protein, heteroge 99.6 6.8E-17 2.3E-21 141.8 3.7 84 101-186 38-123 (126)
224 1why_A Hypothetical protein ri 99.6 6.6E-16 2.3E-20 128.3 9.3 78 102-185 14-94 (97)
225 2lcw_A RNA-binding protein FUS 99.4 2E-17 6.7E-22 142.3 0.0 85 103-187 5-98 (116)
226 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.1E-16 2.1E-20 136.6 9.6 81 101-181 59-140 (140)
227 2hgm_A HNRPF protein, heteroge 99.6 7.7E-17 2.6E-21 141.5 3.7 79 3-83 40-121 (126)
228 2kn4_A Immunoglobulin G-bindin 99.6 3E-16 1E-20 141.9 7.6 82 4-85 69-152 (158)
229 2dnp_A RNA-binding protein 14; 99.6 8.2E-16 2.8E-20 126.0 9.6 79 102-188 6-85 (90)
230 2hvz_A Splicing factor, argini 99.6 6.9E-16 2.4E-20 129.1 9.2 77 106-187 1-78 (101)
231 1wel_A RNA-binding protein 12; 99.6 7.6E-17 2.6E-21 140.5 3.4 83 102-185 22-105 (124)
232 2cpi_A CCR4-NOT transcription 99.6 1.8E-16 6.1E-21 135.5 5.6 83 3-85 13-103 (111)
233 1x4a_A Splicing factor, argini 99.6 3.3E-16 1.1E-20 133.0 7.2 80 3-85 20-101 (109)
234 2xs2_A Deleted in azoospermia- 99.6 1E-16 3.5E-21 134.4 3.9 82 3-85 7-88 (102)
235 1x4g_A Nucleolysin TIAR; struc 99.6 9.1E-16 3.1E-20 130.3 9.8 81 102-188 22-103 (109)
236 2hgn_A Heterogeneous nuclear r 99.6 9.6E-17 3.3E-21 143.3 3.7 81 3-85 44-125 (139)
237 2jvr_A Nucleolar protein 3; RN 99.6 4E-16 1.4E-20 134.0 7.3 80 102-185 25-106 (111)
238 2cpx_A Hypothetical protein FL 99.6 3.9E-16 1.3E-20 133.5 7.3 83 4-86 24-108 (115)
239 2kt5_A RNA and export factor-b 99.6 5E-16 1.7E-20 135.0 7.9 82 3-85 33-116 (124)
240 3q2s_C Cleavage and polyadenyl 99.6 2E-16 7E-21 152.6 5.7 79 4-82 67-149 (229)
241 2e5j_A Methenyltetrahydrofolat 99.6 9.4E-16 3.2E-20 127.5 8.9 80 102-186 16-96 (97)
242 2cpj_A Non-POU domain-containi 99.6 1.1E-15 3.8E-20 127.4 9.3 80 102-187 12-92 (99)
243 2e5g_A U6 snRNA-specific termi 99.6 9.9E-16 3.4E-20 126.6 8.6 81 103-189 6-87 (94)
244 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.3E-21 138.5 4.4 83 103-186 21-107 (123)
245 2cpd_A Apobec-1 stimulating pr 99.6 2.4E-15 8.1E-20 125.4 11.0 77 103-187 13-92 (99)
246 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.6E-16 1.6E-20 137.4 6.6 78 3-80 61-140 (140)
247 1x4c_A Splicing factor, argini 99.6 7.2E-16 2.4E-20 131.0 7.5 77 3-86 13-96 (108)
248 2lcw_A RNA-binding protein FUS 99.4 4.5E-17 1.5E-21 140.0 0.0 85 2-86 4-98 (116)
249 2ad9_A Polypyrimidine tract-bi 99.6 6.5E-16 2.2E-20 134.2 7.2 79 3-87 29-111 (119)
250 2err_A Ataxin-2-binding protei 99.6 4.8E-16 1.6E-20 132.4 6.3 80 2-83 26-107 (109)
251 1x5o_A RNA binding motif, sing 99.6 3.9E-16 1.3E-20 133.5 5.7 80 2-82 22-111 (114)
252 2lmi_A GRSF-1, G-rich sequence 99.6 1.7E-16 5.9E-21 134.7 3.3 82 102-185 8-93 (107)
253 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-15 3.8E-20 125.0 7.9 72 105-182 7-79 (89)
254 2e44_A Insulin-like growth fac 99.6 1.5E-15 5.1E-20 125.7 8.8 82 101-186 11-94 (96)
255 2fc9_A NCL protein; structure 99.6 5.2E-16 1.8E-20 129.8 6.1 80 2-85 12-93 (101)
256 1wex_A Hypothetical protein (r 99.6 8.6E-16 2.9E-20 130.3 7.5 77 4-86 14-94 (104)
257 2cq1_A PTB-like protein L; RRM 99.6 5.7E-16 1.9E-20 130.7 5.9 78 3-86 13-94 (101)
258 1x4f_A Matrin 3; structural ge 99.6 2.5E-15 8.4E-20 129.2 10.0 80 102-187 22-105 (112)
259 2cqh_A IGF-II mRNA-binding pro 99.6 1.5E-15 5.2E-20 125.0 8.3 80 102-188 5-87 (93)
260 2xs2_A Deleted in azoospermia- 99.6 3.5E-16 1.2E-20 131.1 4.3 83 103-187 7-89 (102)
261 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-15 3.8E-20 131.2 7.5 81 3-84 6-89 (114)
262 2la4_A Nuclear and cytoplasmic 99.6 1.2E-15 4.1E-20 127.6 7.5 76 103-184 25-101 (101)
263 2dgu_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 127.3 8.5 78 3-88 9-88 (103)
264 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.6E-20 128.7 7.8 81 103-185 13-101 (105)
265 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-15 3.9E-20 126.4 7.2 81 102-187 13-94 (96)
266 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.9E-20 125.1 7.0 76 3-86 6-83 (90)
267 2fc8_A NCL protein; structure 99.6 6.5E-16 2.2E-20 129.4 5.7 81 3-86 13-95 (102)
268 1x4d_A Matrin 3; structural ge 99.6 5.9E-16 2E-20 130.9 5.3 77 3-85 13-94 (102)
269 2nlw_A Eukaryotic translation 99.6 1E-15 3.5E-20 129.5 6.6 79 4-84 14-101 (105)
270 1wf0_A TDP-43, TAR DNA-binding 99.6 7.7E-16 2.7E-20 125.6 5.2 79 3-86 3-81 (88)
271 2a3j_A U1 small nuclear ribonu 99.6 2.2E-15 7.4E-20 132.4 8.4 82 102-186 26-112 (127)
272 2krb_A Eukaryotic translation 99.6 8.5E-16 2.9E-20 123.5 5.4 71 5-77 1-80 (81)
273 2ytc_A PRE-mRNA-splicing facto 99.6 2.3E-15 7.9E-20 121.6 7.9 76 101-182 8-85 (85)
274 1why_A Hypothetical protein ri 99.6 1.6E-15 5.5E-20 126.0 7.1 76 3-84 15-94 (97)
275 1x4g_A Nucleolysin TIAR; struc 99.6 1.9E-15 6.5E-20 128.3 7.7 78 3-86 23-102 (109)
276 2wbr_A GW182, gawky, LD47780P; 99.6 1.3E-15 4.4E-20 124.6 6.3 71 5-81 7-79 (89)
277 2jvo_A Nucleolar protein 3; nu 99.6 2.5E-15 8.4E-20 128.0 8.3 79 101-187 27-106 (108)
278 1rk8_A CG8781-PA, CG8781-PA pr 99.6 9.1E-16 3.1E-20 140.2 6.0 84 3-86 70-155 (165)
279 2kvi_A Nuclear polyadenylated 99.6 1.6E-15 5.6E-20 125.9 6.7 78 102-187 7-86 (96)
280 1wf0_A TDP-43, TAR DNA-binding 99.6 1.4E-15 4.6E-20 124.1 6.0 80 103-188 3-82 (88)
281 2jvr_A Nucleolar protein 3; RN 99.6 1.6E-15 5.5E-20 130.1 6.6 76 4-83 27-105 (111)
282 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4E-20 125.5 5.5 78 3-85 9-86 (89)
283 4f02_A Polyadenylate-binding p 99.6 3E-15 1E-19 142.0 9.2 83 103-185 13-96 (213)
284 1nu4_A U1A RNA binding domain; 99.6 1.8E-15 6.3E-20 125.3 6.5 82 102-186 5-91 (97)
285 2dnl_A Cytoplasmic polyadenyla 99.6 1.9E-15 6.4E-20 129.7 6.6 80 103-184 6-88 (114)
286 2la4_A Nuclear and cytoplasmic 99.6 1.8E-15 6.1E-20 126.5 6.3 74 4-83 26-101 (101)
287 2e5j_A Methenyltetrahydrofolat 99.6 2.6E-15 8.9E-20 124.8 7.3 76 4-84 18-95 (97)
288 1x5p_A Negative elongation fac 99.6 1.2E-14 4E-19 120.9 11.2 79 102-188 12-91 (97)
289 3d2w_A TAR DNA-binding protein 99.6 1.6E-15 5.4E-20 124.7 5.7 80 102-187 8-87 (89)
290 3r27_A HnRNP L, heterogeneous 99.6 2.6E-15 8.8E-20 126.3 7.1 75 4-84 20-98 (100)
291 3lqv_A PRE-mRNA branch site pr 99.6 3.4E-15 1.2E-19 127.8 8.0 83 102-187 5-88 (115)
292 2cpj_A Non-POU domain-containi 99.6 1.7E-15 5.8E-20 126.3 5.9 77 3-85 13-91 (99)
293 1l3k_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 138.4 8.3 87 101-187 9-95 (196)
294 2e44_A Insulin-like growth fac 99.6 3.5E-15 1.2E-19 123.4 7.6 77 4-84 14-93 (96)
295 2f3j_A RNA and export factor b 99.6 3.1E-15 1.1E-19 138.7 7.9 85 101-186 84-169 (177)
296 2e5g_A U6 snRNA-specific termi 99.6 2.5E-15 8.7E-20 124.1 6.6 78 3-85 6-84 (94)
297 2cqh_A IGF-II mRNA-binding pro 99.6 2.7E-15 9.3E-20 123.5 6.7 77 3-86 6-86 (93)
298 2dgt_A RNA-binding protein 30; 99.6 3.3E-15 1.1E-19 122.8 7.2 76 2-85 7-84 (92)
299 2krb_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 122.6 4.1 72 106-179 2-81 (81)
300 1fjc_A Nucleolin RBD2, protein 99.6 1.9E-15 6.4E-20 125.1 5.4 79 2-85 13-93 (96)
301 2xnq_A Nuclear polyadenylated 99.6 8.2E-15 2.8E-19 122.2 9.2 77 101-185 18-96 (97)
302 2voo_A Lupus LA protein; RNA-b 99.6 1.4E-15 4.7E-20 143.0 4.9 81 104-185 108-188 (193)
303 2dnp_A RNA-binding protein 14; 99.6 4.4E-15 1.5E-19 121.6 7.1 76 2-85 6-83 (90)
304 1nu4_A U1A RNA binding domain; 99.6 2.1E-15 7.2E-20 124.9 5.0 81 3-86 6-92 (97)
305 2ytc_A PRE-mRNA-splicing facto 99.5 4.4E-15 1.5E-19 119.9 6.4 74 2-81 9-85 (85)
306 2f3j_A RNA and export factor b 99.5 3.9E-15 1.3E-19 138.1 6.9 80 4-84 87-168 (177)
307 2cjk_A Nuclear polyadenylated 99.5 4.1E-15 1.4E-19 134.2 6.8 81 4-84 86-167 (167)
308 1x4f_A Matrin 3; structural ge 99.5 2.5E-15 8.4E-20 129.2 4.9 78 3-86 23-105 (112)
309 1b7f_A Protein (SXL-lethal pro 99.5 9.3E-15 3.2E-19 131.8 9.0 84 104-187 2-86 (168)
310 2a3j_A U1 small nuclear ribonu 99.5 4.5E-15 1.5E-19 130.4 6.6 81 4-87 28-114 (127)
311 1whx_A Hypothetical protein ri 99.5 3.4E-15 1.2E-19 127.7 5.6 76 2-83 7-84 (111)
312 1fxl_A Paraneoplastic encephal 99.5 1.1E-14 3.7E-19 130.9 9.1 82 105-186 2-84 (167)
313 1wg1_A KIAA1579 protein, homol 99.5 9E-15 3.1E-19 119.4 7.6 75 104-185 4-79 (88)
314 2jvo_A Nucleolar protein 3; nu 99.5 4.6E-15 1.6E-19 126.3 6.1 76 2-85 28-105 (108)
315 3beg_B Splicing factor, argini 99.5 5.6E-15 1.9E-19 127.1 6.6 73 3-82 14-93 (115)
316 1sjr_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 131.3 10.5 83 101-187 42-127 (164)
317 3egn_A RNA-binding protein 40; 99.5 5.1E-15 1.8E-19 131.8 6.4 82 4-85 44-132 (143)
318 1whx_A Hypothetical protein ri 99.5 9.8E-15 3.4E-19 124.8 7.8 77 104-186 9-86 (111)
319 3egn_A RNA-binding protein 40; 99.5 3.5E-15 1.2E-19 132.9 5.0 86 103-188 43-134 (143)
320 2cpd_A Apobec-1 stimulating pr 99.5 1.1E-14 3.8E-19 121.3 7.5 75 3-85 13-91 (99)
321 1wg1_A KIAA1579 protein, homol 99.5 7.1E-15 2.4E-19 120.0 5.7 75 3-84 3-79 (88)
322 1wf1_A RNA-binding protein RAL 99.5 8.2E-15 2.8E-19 124.6 6.3 73 5-85 27-102 (110)
323 2i2y_A Fusion protein consists 99.5 9.6E-15 3.3E-19 131.1 6.8 77 3-84 71-149 (150)
324 2kvi_A Nuclear polyadenylated 99.5 6.6E-15 2.2E-19 122.2 5.2 75 3-85 8-85 (96)
325 2hzc_A Splicing factor U2AF 65 99.5 1.2E-14 4.1E-19 117.7 6.5 72 2-79 3-86 (87)
326 2qfj_A FBP-interacting repress 99.5 1.5E-14 5E-19 136.1 7.0 82 4-85 124-207 (216)
327 2bz2_A Negative elongation fac 99.5 2.6E-14 8.8E-19 124.3 8.0 79 101-187 35-114 (121)
328 2xnq_A Nuclear polyadenylated 99.5 1.7E-14 5.9E-19 120.2 6.6 73 3-83 20-95 (97)
329 2cq2_A Hypothetical protein LO 99.5 2.7E-14 9.3E-19 122.9 8.0 77 103-185 23-107 (114)
330 3md3_A Nuclear and cytoplasmic 99.5 1.6E-14 5.6E-19 129.6 6.3 79 3-81 85-165 (166)
331 3zzy_A Polypyrimidine tract-bi 99.5 5.8E-14 2E-18 123.6 9.5 82 101-187 24-109 (130)
332 2e5i_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 120.8 10.8 80 101-186 21-104 (124)
333 1sjr_A Polypyrimidine tract-bi 99.5 4.1E-14 1.4E-18 129.2 8.2 77 5-85 46-126 (164)
334 2j8a_A Histone-lysine N-methyl 99.5 2.2E-14 7.7E-19 125.1 6.0 78 106-183 3-95 (136)
335 2yh0_A Splicing factor U2AF 65 99.5 2.6E-14 9E-19 132.5 6.7 83 3-85 112-196 (198)
336 2j8a_A Histone-lysine N-methyl 99.5 2E-14 6.9E-19 125.4 5.5 76 6-81 3-94 (136)
337 2hzc_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 114.5 6.7 71 103-180 4-86 (87)
338 1x5p_A Negative elongation fac 99.5 4.8E-14 1.6E-18 117.1 7.1 75 3-85 13-89 (97)
339 2g4b_A Splicing factor U2AF 65 99.5 2.9E-14 1E-18 129.2 6.3 76 5-80 94-171 (172)
340 3pgw_S U1-70K; protein-RNA com 99.5 2.8E-14 9.6E-19 150.2 7.0 82 4-85 101-184 (437)
341 3nmr_A Cugbp ELAV-like family 99.5 8.7E-14 3E-18 126.1 8.3 83 104-186 2-90 (175)
342 2pe8_A Splicing factor 45; RRM 99.5 1.5E-13 5.2E-18 116.6 8.7 81 103-183 6-93 (105)
343 2cq2_A Hypothetical protein LO 99.5 6.4E-14 2.2E-18 120.6 6.3 77 3-85 23-108 (114)
344 2voo_A Lupus LA protein; RNA-b 99.4 3.7E-14 1.3E-18 133.2 4.6 79 4-83 108-187 (193)
345 2diu_A KIAA0430 protein; struc 99.4 1.6E-13 5.5E-18 113.4 7.7 74 104-187 7-87 (96)
346 3tyt_A Heterogeneous nuclear r 99.4 1.8E-13 6.3E-18 129.6 8.8 78 104-186 3-82 (205)
347 3zzy_A Polypyrimidine tract-bi 99.4 1.4E-13 4.7E-18 121.2 7.1 75 6-85 29-108 (130)
348 2e5i_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 117.9 8.0 74 6-85 26-104 (124)
349 3u1l_A PRE-mRNA-splicing facto 99.4 4.2E-13 1.4E-17 130.0 8.7 79 102-186 131-231 (240)
350 2bz2_A Negative elongation fac 99.4 2.5E-13 8.7E-18 118.0 6.4 75 3-85 37-113 (121)
351 2dit_A HIV TAT specific factor 99.4 1.1E-12 3.9E-17 111.9 10.4 83 101-187 11-105 (112)
352 3pgw_A U1-A; protein-RNA compl 99.4 5E-13 1.7E-17 131.4 9.2 83 101-186 5-92 (282)
353 1fje_B Nucleolin RBD12, protei 99.4 1.6E-13 5.4E-18 125.0 5.1 85 101-187 9-94 (175)
354 2diu_A KIAA0430 protein; struc 99.4 4.6E-13 1.6E-17 110.7 7.4 73 5-87 8-88 (96)
355 2adc_A Polypyrimidine tract-bi 99.4 5.7E-13 2E-17 127.7 8.1 79 103-186 32-112 (229)
356 2pe8_A Splicing factor 45; RRM 99.4 3.3E-13 1.1E-17 114.5 5.3 81 2-82 5-93 (105)
357 3u1l_A PRE-mRNA-splicing facto 99.4 3.9E-13 1.3E-17 130.2 6.0 79 2-86 131-232 (240)
358 3v4m_A Splicing factor U2AF 65 99.3 1.9E-12 6.7E-17 109.7 7.5 82 103-184 3-97 (105)
359 1qm9_A Polypyrimidine tract-bi 99.3 1.3E-12 4.3E-17 121.7 6.5 77 105-186 3-81 (198)
360 2d9o_A DNAJ (HSP40) homolog, s 99.3 8.9E-12 3E-16 104.8 10.2 68 115-188 27-94 (100)
361 1jmt_A Splicing factor U2AF 35 99.3 1.9E-12 6.6E-17 109.5 4.8 71 110-181 20-103 (104)
362 2dit_A HIV TAT specific factor 99.3 3.8E-12 1.3E-16 108.6 6.2 80 3-86 13-105 (112)
363 2d9o_A DNAJ (HSP40) homolog, s 99.3 8E-12 2.7E-16 105.0 7.7 77 4-85 9-92 (100)
364 3sde_A Paraspeckle component 1 99.2 1.1E-11 3.7E-16 121.2 9.0 76 103-184 20-96 (261)
365 3ue2_A Poly(U)-binding-splicin 99.2 9.3E-12 3.2E-16 107.8 7.5 80 104-183 19-108 (118)
366 1jmt_A Splicing factor U2AF 35 99.2 3.1E-12 1.1E-16 108.2 3.0 70 10-80 20-103 (104)
367 3v4m_A Splicing factor U2AF 65 99.2 1E-11 3.5E-16 105.2 5.8 80 4-83 4-97 (105)
368 3ue2_A Poly(U)-binding-splicin 99.2 9.2E-12 3.2E-16 107.8 5.4 79 4-82 19-108 (118)
369 3s6e_A RNA-binding protein 39; 99.1 2E-10 6.9E-15 98.7 7.5 77 103-183 5-92 (114)
370 3tht_A Alkylated DNA repair pr 99.1 1.8E-10 6.2E-15 117.1 8.2 73 2-80 15-96 (345)
371 3tht_A Alkylated DNA repair pr 99.1 1.5E-10 5.3E-15 117.6 7.0 75 102-182 15-97 (345)
372 1owx_A Lupus LA protein, SS-B, 98.9 1.9E-09 6.4E-14 93.5 7.0 79 98-182 11-94 (121)
373 3s6e_A RNA-binding protein 39; 98.8 2.2E-09 7.4E-14 92.3 5.4 76 4-83 6-93 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.8 6.1E-09 2.1E-13 85.3 6.5 72 104-184 6-86 (91)
375 1owx_A Lupus LA protein, SS-B, 98.7 5.9E-09 2E-13 90.3 4.6 71 4-80 17-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.7 2.3E-08 7.9E-13 82.3 6.0 72 103-183 13-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.6 5.2E-08 1.8E-12 79.7 6.3 71 5-83 7-86 (91)
378 3dxb_A Thioredoxin N-terminall 98.5 9.2E-08 3.1E-12 90.8 6.1 66 117-182 141-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.6E-12 77.2 5.3 69 5-81 15-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.4 1.9E-07 6.6E-12 88.5 4.2 67 16-82 140-212 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.3 1E-06 3.5E-11 73.4 6.1 88 4-119 7-100 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.1 4.7E-06 1.6E-10 70.0 7.3 71 104-180 20-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.0 7.6E-06 2.6E-10 68.8 6.7 72 3-80 19-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.9 2.1E-05 7.1E-10 65.5 7.4 76 103-186 6-86 (104)
385 1wey_A Calcipressin 1; structu 97.1 0.001 3.6E-08 55.4 6.8 75 105-185 5-85 (104)
386 1whv_A Poly(A)-specific ribonu 97.0 0.0013 4.5E-08 54.1 6.7 59 101-168 12-70 (100)
387 1uw4_A UPF3X; nonsense mediate 96.9 0.0013 4.4E-08 53.8 5.8 63 106-168 2-66 (91)
388 1whv_A Poly(A)-specific ribonu 96.7 0.0016 5.4E-08 53.6 4.7 50 6-64 17-66 (100)
389 1uw4_A UPF3X; nonsense mediate 96.7 0.0015 5.3E-08 53.3 4.7 65 6-70 2-70 (91)
390 1wey_A Calcipressin 1; structu 96.6 0.004 1.4E-07 51.9 6.4 73 5-83 5-84 (104)
391 1wwh_A Nucleoporin 35, nucleop 96.4 0.0061 2.1E-07 52.1 6.6 74 103-183 22-96 (119)
392 3ctr_A Poly(A)-specific ribonu 96.3 0.004 1.4E-07 51.3 5.0 55 104-167 5-59 (101)
393 1wwh_A Nucleoporin 35, nucleop 96.2 0.0046 1.6E-07 52.9 4.9 71 4-81 23-95 (119)
394 3ctr_A Poly(A)-specific ribonu 96.2 0.0024 8.2E-08 52.7 2.8 50 6-64 7-56 (101)
395 3pq1_A Poly(A) RNA polymerase; 95.7 0.0033 1.1E-07 66.0 2.2 56 3-64 51-106 (464)
396 2l08_A Regulator of nonsense t 95.7 0.0045 1.5E-07 51.0 2.5 65 104-168 8-74 (97)
397 3p3d_A Nucleoporin 53; structu 95.6 0.014 4.7E-07 50.6 5.2 80 1-81 3-97 (132)
398 2l08_A Regulator of nonsense t 95.2 0.0076 2.6E-07 49.7 2.3 61 4-64 8-70 (97)
399 3pq1_A Poly(A) RNA polymerase; 94.9 0.014 4.6E-07 61.3 3.6 56 104-165 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 94.6 0.018 6.1E-07 49.9 2.9 78 105-183 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 84.9 1.6 5.4E-05 46.2 7.3 57 103-168 438-494 (507)
402 3d45_A Poly(A)-specific ribonu 77.4 1.7 5.9E-05 45.9 4.4 51 5-64 440-490 (507)
403 3ezj_A General secretion pathw 65.7 34 0.0012 31.9 10.1 114 13-129 9-133 (241)
404 2cu1_A Mitogen-activated prote 59.5 22 0.00076 29.0 6.2 65 112-184 23-88 (103)
405 2ew9_A Copper-transporting ATP 56.1 83 0.0028 25.8 11.3 133 1-167 1-141 (149)
406 3oss_D Type 2 secretion system 52.4 78 0.0027 28.3 9.6 141 13-166 9-174 (181)
407 4eyt_A Telomerase associated p 48.5 56 0.0019 26.1 6.9 72 104-183 11-90 (129)
408 4eyt_A Telomerase associated p 44.0 54 0.0018 26.2 6.1 53 4-64 11-63 (129)
409 4e8u_A Putative uncharacterize 40.2 68 0.0023 28.7 6.9 49 117-168 33-84 (172)
410 2hiy_A Hypothetical protein; C 40.2 32 0.0011 31.1 4.9 117 7-137 8-133 (183)
411 4e9j_A General secretion pathw 39.3 1E+02 0.0034 28.8 8.5 67 12-81 21-97 (246)
412 2jrh_A Mitogen-activated prote 38.8 1.2E+02 0.0042 24.0 7.3 64 112-183 19-83 (94)
413 2npt_B Mitogen-activated prote 37.9 1.1E+02 0.0037 24.7 6.9 59 112-178 35-94 (100)
414 2g0c_A ATP-dependent RNA helic 36.6 42 0.0014 25.1 4.4 58 116-182 12-75 (76)
415 2c60_A Human mitogen-activated 36.4 1E+02 0.0035 25.2 6.7 60 112-179 46-106 (111)
416 4go7_X Aspartokinase; transfer 34.9 2.1E+02 0.0072 26.0 9.7 28 3-30 33-61 (200)
417 3lpe_A Putative transcription 33.1 1.3E+02 0.0044 23.7 7.0 19 46-64 49-67 (92)
418 3fry_A Probable copper-exporti 32.1 1.1E+02 0.0036 22.0 6.0 56 105-167 6-61 (73)
419 3zzp_A TS9, ribosomal protein 31.9 77 0.0026 24.4 5.2 61 49-131 7-70 (77)
420 2v94_A RPS24, 30S ribosomal pr 31.1 60 0.0021 26.7 4.7 48 16-64 38-90 (107)
421 3bb5_A Stress responsive alpha 29.7 1.9E+02 0.0065 23.7 7.8 61 105-165 21-92 (121)
422 2g1d_A 30S ribosomal protein S 29.2 58 0.002 26.4 4.2 47 16-63 30-81 (98)
423 3bgu_A Ferredoxin-like protein 28.4 1.6E+02 0.0055 24.0 7.1 59 106-165 23-91 (116)
424 2y3m_A Emhofq, protein transpo 27.9 1.9E+02 0.0067 25.0 8.0 67 13-82 8-80 (175)
425 1xn9_A 30S ribosomal protein S 27.6 55 0.0019 26.7 3.8 49 15-64 28-81 (101)
426 2qyc_A Ferredoxin-like protein 27.5 1.7E+02 0.0057 23.1 6.9 56 108-164 8-73 (103)
427 1ywx_A 30S ribosomal protein S 26.4 58 0.002 26.6 3.7 49 15-64 28-81 (102)
428 2lfv_A Protein DAMX; cell divi 30.9 15 0.00052 30.3 0.0 54 117-172 34-89 (106)
429 1q4r_A Protein AT3G17210; cent 24.6 2.2E+02 0.0075 22.8 7.2 60 106-165 12-82 (112)
430 4hhu_A OR280; engineered prote 24.3 2E+02 0.0067 24.1 6.6 71 106-181 43-129 (170)
431 4av2_A PILQ, type IV pilus bio 24.3 42 0.0014 37.0 3.4 65 12-79 323-393 (745)
432 3ilw_A DNA gyrase subunit A; D 23.5 2.3E+02 0.0079 29.3 8.5 60 4-64 235-298 (470)
433 2xzm_P RPS24E; ribosome, trans 22.2 1.1E+02 0.0037 26.8 4.8 49 15-64 31-84 (149)
434 3u5c_Y RP50, 40S ribosomal pro 21.4 97 0.0033 26.6 4.3 48 16-64 34-86 (135)
435 1tr0_A Stable protein 1; plant 21.3 2.6E+02 0.0089 22.1 7.0 60 106-165 10-82 (108)
436 3uzu_A Ribosomal RNA small sub 21.2 38 0.0013 32.5 2.0 45 4-64 113-157 (279)
437 3fut_A Dimethyladenosine trans 20.1 63 0.0022 30.8 3.3 40 8-64 113-152 (271)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.5e-35 Score=276.44 Aligned_cols=180 Identities=37% Similarity=0.740 Sum_probs=152.2
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.+.++.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 356899999999999999999999999999999999999989999999999999999999999 7778899999999998
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
.++...... ......++|||+|||+++|+++|+++|++||.|+.|.|+.|+.+++++|||||+|+++++|
T Consensus 90 ~~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 90 VSREDSQRP----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CC---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCccccccc----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 765433211 1224568999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHhhhhcCeEEEEeecCCCCCCCCCC
Q 011518 161 DKVLLKTFHELNGKMVEVKRAVPKELSPGPS 191 (484)
Q Consensus 161 ~~Al~~~~~~l~Gr~I~V~~a~~k~~~~~~~ 191 (484)
++||+++.+.|+|++|+|+++.+++......
T Consensus 160 ~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~~ 190 (196)
T 1l3k_A 160 DKIVIQKYHTVNGHNCEVRKALSKQEMASAS 190 (196)
T ss_dssp HHHHHCSCCEETTEECEEEECC---------
T ss_pred HHHHHhCCcEECCEEEEEEecCChhHhcccc
Confidence 9999986689999999999999988765443
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=5.7e-35 Score=265.60 Aligned_cols=167 Identities=47% Similarity=0.936 Sum_probs=153.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (484)
++.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+.+.+.+.++.|.|.++.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 46899999999999999999999999999999999999989999999999999999999999777889999999988765
Q ss_pred CCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHH
Q 011518 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (484)
+... ...++|||+|||.++++++|+++|++||.|++|.|+.|+.+++++|||||+|.++++|++
T Consensus 81 ~~~~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDEQ----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHHH----------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhhc----------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4322 235789999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHhhhhcCeEEEEeecCCCC
Q 011518 163 VLLKTFHELNGKMVEVKRAVPKE 185 (484)
Q Consensus 163 Al~~~~~~l~Gr~I~V~~a~~k~ 185 (484)
|++.....|.|++|+|+++.|++
T Consensus 145 A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCCCC
T ss_pred HHhCCCEEeCCeEEEEeecCCCC
Confidence 99843389999999999998863
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.3e-34 Score=271.34 Aligned_cols=180 Identities=22% Similarity=0.462 Sum_probs=155.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 5689999999999999999999999999999999999889999999999999999999999 78899999999998877
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
............ .......++|||+|||.+++++||+++|++||.|++|+|++++.+++++|||||+|++.++|+
T Consensus 107 ~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQPIIDQL-----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGHHHHHHH-----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccchhhhhh-----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 654322111000 001235689999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
+|++.++ ..|.|++|+|.++.++....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999988 89999999999998876544
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.4e-34 Score=271.42 Aligned_cols=167 Identities=26% Similarity=0.457 Sum_probs=151.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++|| ++...+.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999 78889999999998876
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
....... ...++|||+|||+++|+++|+++|++||.|++|+|++|+. .+||||||+|+++++|+
T Consensus 94 ~~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 94 RDPSLRK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAE 157 (213)
T ss_dssp CCTHHHH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHH
T ss_pred ccccccc--------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHH
Confidence 5443221 2346899999999999999999999999999999999864 47999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCCCCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
+||+.++ ++|+|++|+|+++.++..
T Consensus 158 ~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 158 RAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 9999988 899999999999987653
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-33 Score=252.44 Aligned_cols=163 Identities=23% Similarity=0.452 Sum_probs=150.0
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
|+|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|+ ++...+.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 5789999999999999999999 8899999999999988654
Q ss_pred CcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHH
Q 011518 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~A 163 (484)
... .....++|||+|||..+++++|+++|++||.|+.|.|+.++.+++++|+|||+|.++++|++|
T Consensus 80 ~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQS--------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCC--------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CCC--------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 421 234568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhhcCeEEEEeecCC
Q 011518 164 LLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~~ 183 (484)
++.++ ..|+|++|+|++|++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 99888 899999999999863
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.7e-33 Score=251.85 Aligned_cols=162 Identities=22% Similarity=0.437 Sum_probs=150.7
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999889999999999999999999999 78999999999999887
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
+... ....++|||+|||..+++++|+++|++||.|+.|.|++++.+++++|+|||+|.+.++|+
T Consensus 82 ~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSS----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcc----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 6432 234588999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHh-hhhcC--eEEEEeec
Q 011518 162 KVLLKTF-HELNG--KMVEVKRA 181 (484)
Q Consensus 162 ~Al~~~~-~~l~G--r~I~V~~a 181 (484)
+|++.++ ..|.+ ++|+|++|
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999888 88877 99999875
No 7
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.7e-32 Score=256.06 Aligned_cols=184 Identities=18% Similarity=0.336 Sum_probs=153.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhhe-----eecccccccccceeEEEEeChhhHHHhh-hhccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV-----IMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~-----I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~ 76 (484)
...++|||+|||+++||++|+++|++||+|..+. .+.+..+++++|||||+|.++++|++|| ++.+.|.+++|.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 4679999999999999999999999999888764 3444456788999999999999999999 889999999999
Q ss_pred ecccCCCCcccccccCCC----cccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeee
Q 011518 77 AKKAVPRDDQNIQNRNNS----SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI 152 (484)
Q Consensus 77 V~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV 152 (484)
|.++.+............ ...........++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 998876543322111110 1111223356789999999999999999999999999999999999989999999999
Q ss_pred eeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCCC
Q 011518 153 TYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 153 ~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
+|+++++|++|++.++ ..|+|++|+|+++.++..
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999888 899999999999988754
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.5e-32 Score=248.74 Aligned_cols=161 Identities=25% Similarity=0.515 Sum_probs=148.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999999889999999999999999999999 789999999999998876
Q ss_pred CCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHH
Q 011518 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (484)
.... ...++|||+|||..+++++|+++|++||.|++|+|+.++.+++++|+|||+|.+.++|++
T Consensus 82 ~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 5321 245789999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHh-hhhcCeE--EEEeec
Q 011518 163 VLLKTF-HELNGKM--VEVKRA 181 (484)
Q Consensus 163 Al~~~~-~~l~Gr~--I~V~~a 181 (484)
|++.++ ..|.|+. |+|++|
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 999888 8999975 777765
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=5.8e-32 Score=246.88 Aligned_cols=164 Identities=18% Similarity=0.372 Sum_probs=144.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhhe-----eecccccccccceeEEEEeChhhHHHhh-hhccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV-----IMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~-----I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~ 76 (484)
++.++|||+|||+++||++|+++|++||+|..+. .+.+..+.+++|||||+|.++++|++|+ ++.+.+.+++|.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 4689999999999999999999999998776542 2223335677899999999999999999 888999999999
Q ss_pred ecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc
Q 011518 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (484)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (484)
|.++..... ....++|||+|||+++++++|+++|++||.|+.|.|++++.+++++|+|||+|++
T Consensus 82 v~~~~~~~~----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 82 IRRPHDYQP----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp EECCSSCCC----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred ecCCcccCC----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 988654322 1346889999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 157 EEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 157 ~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
+++|++|++.++ +.|+|++|+|++|.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999888 89999999999873
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=7.4e-32 Score=246.26 Aligned_cols=164 Identities=21% Similarity=0.409 Sum_probs=141.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccc--cccceeEEEEeChhhHHHhh--hhccccc---ccee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATG--RARGFGFIVFADPAVAERVV--MQKHMID---GRTV 75 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg--~skG~aFVeF~~~e~A~~Al--~~~~~i~---Gr~I 75 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++ +++|||||+|.++++|++|+ ++...+. .+.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 368999999999999999999999999999999999998777 89999999999999999999 5655554 4556
Q ss_pred eecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeec
Q 011518 76 EAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD 155 (484)
Q Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~ 155 (484)
.+.++.+... .....++|||+|||+++|+++|+++|++||.|++|.|++++ +++++|||||+|+
T Consensus 81 ~~~~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 81 QMKPADSEKN---------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp EEEECGGGCC---------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred EEcccccccc---------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 6655443221 22356789999999999999999999999999999999996 4889999999999
Q ss_pred cHHHHHHHHHHHh-hhhc---CeEEEEeecC
Q 011518 156 SEEAVDKVLLKTF-HELN---GKMVEVKRAV 182 (484)
Q Consensus 156 s~e~A~~Al~~~~-~~l~---Gr~I~V~~a~ 182 (484)
++++|++|++.++ ..+. +++|.|++|.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999988 5555 4999999873
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.4e-31 Score=245.58 Aligned_cols=162 Identities=21% Similarity=0.332 Sum_probs=145.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.+.++|||+|||+++|+++|+++|++||+|.. .+++++.+++++|||||+|.++++|++|| ++...+.+++|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 46899999999999999999999999999988 55566678999999999999999999999 89999999999999987
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
++... .....++|||+|||.++++++|+++|++||.|..+ +.+++++|||||+|.+.++|+
T Consensus 90 ~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 90 GRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHH
T ss_pred Ccccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHH
Confidence 65432 22456899999999999999999999999987665 466889999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
+|++.++ +.|+|++|+|+++.+|
T Consensus 151 ~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 151 KNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHhCCCEECCeEEEEEecCCC
Confidence 9999988 8999999999999876
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.1e-29 Score=251.25 Aligned_cols=170 Identities=14% Similarity=0.239 Sum_probs=155.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|+.|+|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35679999999999999999999999999999999999889999999999999999999999 8899999999999998
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEeccccccc-chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTV-TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~-teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~ 159 (484)
.++... ......++|||+|||+++ ++++|+++|++||.|+.|+|+.++ +++++|+|||+|.++++
T Consensus 173 ~~~~~~-------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 173 DAGQLT-------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CGGGCC-------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHH
T ss_pred CCCCCC-------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHH
Confidence 764322 122456899999999995 999999999999999999999986 68899999999999999
Q ss_pred HHHHHHHHh-hhhcCeEEEEeecCCCCC
Q 011518 160 VDKVLLKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
|++|++.++ +.|.|++|.|.++.++..
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999988 899999999999988765
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=7.7e-30 Score=242.73 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=139.5
Q ss_pred cccceEEeeec-cCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGIS-WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP-~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
+.++|||+||| +++|+++|+++|++||+|++|+|++++ ||||||+|.++++|++|| ++...+.+++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998863 699999999999999999 8999999999999988
Q ss_pred CCCCcccccc--cC----------CCccc---------CCCCCCccceEEecccccccchhHHHHHhhhcCce--eeEEE
Q 011518 81 VPRDDQNIQN--RN----------NSSIH---------GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGII--TDVVV 137 (484)
Q Consensus 81 ~~~~~~~~~~--~~----------~~~~~---------~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I--~~v~i 137 (484)
..+....... .. ..... ......+.++|||+|||+++||++|+++|++||.| ++|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6443211000 00 00000 00012346789999999999999999999999999 89998
Q ss_pred EeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCe----EEEEeec
Q 011518 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK----MVEVKRA 181 (484)
Q Consensus 138 ~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr----~I~V~~a 181 (484)
+.++ ++++|+|||+|++.++|++||+.++ ++|.++ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 4567999999999999999999998 788876 5777765
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.1e-29 Score=252.20 Aligned_cols=171 Identities=17% Similarity=0.283 Sum_probs=144.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
+.++|||+|||+++|+++|+++|++|| +|+.|.|++++. +++++||||+|.++++|++|+ ++.+.|.+++|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999999874 789999999999999999999 8999999999999998
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccc-cchhHHHHHhhhcCceeeEEEEeeCC-CCCccceeeeeeccHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHN-TQRPRGFGFITYDSEE 158 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~-~teedL~~~F~~~G~I~~v~i~~d~~-tg~~rG~aFV~F~s~e 158 (484)
.+....... .......++|||+|||+. +++++|+++|++||.|+.|+|++++. |++++|||||+|.+++
T Consensus 195 ~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 195 NPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 876543221 113356789999999999 99999999999999999999999876 6899999999999999
Q ss_pred HHHHHHHHHh-hhhcCeEEEEeecCCCC
Q 011518 159 AVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
+|++|+ .++ +.|.|++|+|.++.+|+
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999 877 89999999999998863
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.2e-29 Score=248.94 Aligned_cols=172 Identities=16% Similarity=0.282 Sum_probs=143.1
Q ss_pred ccccceEEeeeccCCchHHHH----HHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
...++|||+|||+++||++|+ ++|++||+|++|+|++ ++++||||||+|.++++|++|| ++...|.++.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 468999999999999999977 8999999999999886 6789999999999999999999 889999999999
Q ss_pred ecccCCCCcccccccCCC---------------------c----------------------------------------
Q 011518 77 AKKAVPRDDQNIQNRNNS---------------------S---------------------------------------- 95 (484)
Q Consensus 77 V~~a~~~~~~~~~~~~~~---------------------~---------------------------------------- 95 (484)
|.++..+........... .
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 998866542100000000 0
Q ss_pred ----------------------------------ccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeC
Q 011518 96 ----------------------------------IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH 141 (484)
Q Consensus 96 ----------------------------------~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~ 141 (484)
..........++|||+|||..+++++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 0000122356889999999999999999999999999999999664
Q ss_pred CCCCccceeeeeeccHHHHHHHHHHHh-hhhc-CeEEEEeecC
Q 011518 142 NTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAV 182 (484)
Q Consensus 142 ~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~ 182 (484)
+|||||+|++.++|++||+.++ ..|. +++|+|.+++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5799999999999999999988 8888 9999999985
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2e-29 Score=236.23 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=143.6
Q ss_pred ccccceEEeeecc-CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
++.++|||+|||+ ++|+++|+++|++||+|++|+|++++ +|||||+|.++++|++|+ ++...+.+++|.|.+
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 3679999999999 99999999999999999999999875 689999999999999999 889999999999998
Q ss_pred cCCCCcccccccCCC-------------------cccCCCCCCccceEEecccccccchhHHHHHhhhcC-ceeeEEEEe
Q 011518 80 AVPRDDQNIQNRNNS-------------------SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMY 139 (484)
Q Consensus 80 a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i~~ 139 (484)
+.+............ .........+.++|||+|||..+++++|+++|++|| .|++|+|+.
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 875532211100000 000001123578999999999999999999999999 999999975
Q ss_pred eCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc-CeEEEEeecCCC
Q 011518 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAVPK 184 (484)
Q Consensus 140 d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~~k 184 (484)
+ .+++|||+|++.++|++|++.++ +.|. +++|+|.+++++
T Consensus 156 ~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4 37899999999999999999888 8899 999999999874
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=6.4e-29 Score=239.39 Aligned_cols=172 Identities=16% Similarity=0.249 Sum_probs=143.5
Q ss_pred ccccceEEeeecc-CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
.+.++|||+|||+ ++|+++|+++|++||+|++|+|++++ ++||||+|.++++|++|+ ++...|.+++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3578999999999 99999999999999999999999875 789999999999999999 889999999999998
Q ss_pred cCCCCcccccccCC-------------------CcccCCCCCCccceEEecccccccchhHHHHHhhhcC-ceeeEEEEe
Q 011518 80 AVPRDDQNIQNRNN-------------------SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMY 139 (484)
Q Consensus 80 a~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i~~ 139 (484)
+.++.......... ..........+.++|||+|||..+++++|+++|++|| .|+.|+|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 87553221110000 0000001123468999999999999999999999999 999999975
Q ss_pred eCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc-CeEEEEeecCCC
Q 011518 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAVPK 184 (484)
Q Consensus 140 d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~~k 184 (484)
+ .+++|||+|++.++|++|++.++ ..|. +++|+|.+++++
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 36899999999999999999888 8898 999999999875
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.6e-28 Score=243.94 Aligned_cols=160 Identities=14% Similarity=0.234 Sum_probs=137.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+ +++||||+|.++++|++|| ++...+.+++|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 456899999999999999999999999999999999998643 5899999999999999999 8889999999999864
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcC-ceeeEEEEeeCCCCCccceeeeeeccHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~ 159 (484)
..++|||+|||+.+++++|+++|++|| .|+.|.|+.++. ++++|||||+|.+.++
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKED 171 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHH
Confidence 257899999999999999999999999 999999999876 7889999999999999
Q ss_pred HHHHHHHHh-hhhcCeEEEEeecCCCCCC
Q 011518 160 VDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~ 187 (484)
|++|++.++ +.|.+++|.|.++.++...
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999999888 8999999999999876543
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=3.4e-28 Score=238.93 Aligned_cols=157 Identities=25% Similarity=0.418 Sum_probs=141.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|.++ +|||||+|.++++|++|+ ++...|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35679999999999999999999999999999999754 589999999999999999 7899999999999987
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
.+ .++|||+|||..+|+++|+++|++||.|++|.|+.| .+++++|||||+|.+.++|
T Consensus 94 ~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 94 TH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHH
T ss_pred cc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHH
Confidence 53 368999999999999999999999999999999999 5789999999999999999
Q ss_pred HHHHHHHh-h-hhc---CeEEEEeecCCCCCCC
Q 011518 161 DKVLLKTF-H-ELN---GKMVEVKRAVPKELSP 188 (484)
Q Consensus 161 ~~Al~~~~-~-~l~---Gr~I~V~~a~~k~~~~ 188 (484)
++||+.++ . .+. +++|.|+++.+.....
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQFDDED 183 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCEESSS
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccccCccC
Confidence 99999985 3 333 9999999998765443
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=5e-28 Score=239.44 Aligned_cols=156 Identities=16% Similarity=0.370 Sum_probs=142.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++|| |++|+| ++++|||||+|.++++|++|+ ++...+.+++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3578999999999999999999999999 888887 346799999999999999999 7888999999999864
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
. ..++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|
T Consensus 93 ~----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 93 P----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp C----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred C----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 2 236899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hhhcCeEEEEeecCCCCCC
Q 011518 161 DKVLLKTF-HELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~~k~~~ 187 (484)
++|++.++ ..|.+++|.|.++.++...
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 99998888 8999999999999876643
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=7.3e-23 Score=185.55 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=112.8
Q ss_pred hheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCCCcccccccCCCcccCCCCCCccceEEec
Q 011518 34 EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVG 111 (484)
Q Consensus 34 ~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVg 111 (484)
.++|+.+.. +++|||||+|.++++|++|+ ++........+.+........... ..............++|||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE---GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC---CCCCSSCCCCCCBCCEEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc---cccccccccCCCCCCEEEEe
Confidence 456777643 68999999999999999999 332222222222222211111100 01111112233567899999
Q ss_pred ccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 112 GLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 112 nLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
|||+++++++|+++|++||.|++|.|++|+.+++++|||||+|+++++|++||+.++ +.|.|++|+|+++.++..++
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999887 89999999999998875443
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=5.3e-21 Score=172.18 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=112.6
Q ss_pred ccccceeEEEEeChhhHHHhh--h-hccccccceeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchh
Q 011518 44 GRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120 (484)
Q Consensus 44 g~skG~aFVeF~~~e~A~~Al--~-~~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~tee 120 (484)
.+.+|+++|+|.++++|++|+ + +...+++ .+.+.++..+......................++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 367899999999999999999 6 8899999 99998876544332221111122223344567899999999999999
Q ss_pred HHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCC
Q 011518 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 121 dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
+|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.++ +.|.|++|+|+++.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999876 58899999999999999999888 89999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.7e-21 Score=166.71 Aligned_cols=108 Identities=21% Similarity=0.453 Sum_probs=73.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++||++|+++|++||+|++|+|++++ +++||||||+|.++++|++|| ++.+.|++++|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999985 458999999999999999999 79999999999999988
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teed 121 (484)
++........ .......+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~--------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG--------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Cccccccccc--------cccCCCCceEeCCCCCCccccc
Confidence 7654332211 1123446799999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=149.52 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=76.6
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ ..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999999999999999999999999999999988 89999999999997
Q ss_pred C
Q 011518 183 P 183 (484)
Q Consensus 183 ~ 183 (484)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=8.1e-20 Score=192.41 Aligned_cols=168 Identities=17% Similarity=0.260 Sum_probs=112.5
Q ss_pred HHHHHHHhhhhhhhheeecc----c-cccccccee--EEEEeChhhHHHhh--hhccccccceeeecccCC-CCcccccc
Q 011518 21 RLRDYFQAFGEVLEAVIMKD----R-ATGRARGFG--FIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP-RDDQNIQN 90 (484)
Q Consensus 21 eL~e~Fs~~G~V~~v~I~~d----~-~tg~skG~a--FVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~-~~~~~~~~ 90 (484)
+|.++|.++++|..|..+.. + .+....+++ |++|.+++++..++ ++......+....+.... ........
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 38899999999988854332 1 112222333 88888876665555 111111111100000000 00000000
Q ss_pred cCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h
Q 011518 91 RNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H 169 (484)
Q Consensus 91 ~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~ 169 (484)
.............+.++|||+|||+.||+++|+++|++||.|+.|.|+.++.+++++|||||+|.++++|++||+.|+ +
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 000001111123456899999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred hhcCeEEEEeecCCCCCCC
Q 011518 170 ELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 170 ~l~Gr~I~V~~a~~k~~~~ 188 (484)
.|++++|.|.++.++....
T Consensus 168 ~i~gr~i~V~~a~~~~~~~ 186 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTVKG 186 (437)
T ss_pred EECCEEEEEEEeCCCCCCC
Confidence 9999999999998876543
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=5.2e-19 Score=160.12 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=80.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++|+++|+++|++||.|+.|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCCCC
Q 011518 182 VPKELSP 188 (484)
Q Consensus 182 ~~k~~~~ 188 (484)
+++...+
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8865443
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=149.53 Aligned_cols=80 Identities=25% Similarity=0.525 Sum_probs=76.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|.++++|++|+ ++...|.+++|.|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999 7899999999999998
Q ss_pred CC
Q 011518 81 VP 82 (484)
Q Consensus 81 ~~ 82 (484)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 28
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=151.65 Aligned_cols=88 Identities=23% Similarity=0.488 Sum_probs=82.0
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ ..|.+++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
+++++..++
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998876554
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-19 Score=145.87 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=75.3
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhh--h-hccccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~-~~~~i~Gr~I~V~~a 80 (484)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++|| + +...+.+++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999 3 456799999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 30
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=6.8e-19 Score=156.23 Aligned_cols=87 Identities=18% Similarity=0.348 Sum_probs=80.6
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++|+++|+++|++||.|+.|+|+.++.+++++|||||+|++.++|++||+.++ +.|++++|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
++++....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 98876544
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-19 Score=146.04 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=76.8
Q ss_pred cceEEecccccccchhHHHHHhhhcC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh--hhhcCeEEEEeec
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEVKRA 181 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~I~V~~a 181 (484)
+++|||+|||+++||+||+++|++|| +|++|+|++|+.++++||||||+|+++++|++||+.++ ..|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999764 5799999999999
Q ss_pred CCCCCC
Q 011518 182 VPKELS 187 (484)
Q Consensus 182 ~~k~~~ 187 (484)
.|++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887643
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=141.29 Aligned_cols=85 Identities=29% Similarity=0.554 Sum_probs=80.0
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||.++++++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 011518 182 VPKELS 187 (484)
Q Consensus 182 ~~k~~~ 187 (484)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=143.07 Aligned_cols=88 Identities=44% Similarity=0.913 Sum_probs=81.2
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
...+.++|||+|||+++++++|+++|++||.|++|.|++|+.+++++|||||+|+++++|++||+ ++ +.|++++|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999 66 89999999999
Q ss_pred ecCCCCCCCC
Q 011518 180 RAVPKELSPG 189 (484)
Q Consensus 180 ~a~~k~~~~~ 189 (484)
++.++..+..
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2dgs_A 85 RAEPRDSKSS 94 (99)
T ss_dssp ECCCCCCCCC
T ss_pred ECCCCcccCC
Confidence 9998876543
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=147.51 Aligned_cols=83 Identities=13% Similarity=0.295 Sum_probs=78.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
.+.++|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|++||+.++ ++|+|++|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999988 8999999999998
Q ss_pred CCCC
Q 011518 182 VPKE 185 (484)
Q Consensus 182 ~~k~ 185 (484)
..++
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=143.45 Aligned_cols=88 Identities=30% Similarity=0.589 Sum_probs=81.6
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
...+.++|||+|||+++++++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++...+
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998876544
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=4.6e-18 Score=145.92 Aligned_cols=87 Identities=21% Similarity=0.350 Sum_probs=81.1
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999899999999999999999999999988 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
++++..++
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98876554
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=143.39 Aligned_cols=88 Identities=28% Similarity=0.506 Sum_probs=82.0
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|++|.|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCCCC
Q 011518 181 AVPKELSPG 189 (484)
Q Consensus 181 a~~k~~~~~ 189 (484)
+.++..+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876553
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=143.94 Aligned_cols=88 Identities=19% Similarity=0.350 Sum_probs=81.5
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 998776544
No 39
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=2.6e-18 Score=157.22 Aligned_cols=138 Identities=13% Similarity=0.225 Sum_probs=79.6
Q ss_pred EEEeChhhHHHhh--hhccccc--cceeeecccCCCCcccccc----cCCCcccCCCCCCccceEEecccccccchhHHH
Q 011518 52 IVFADPAVAERVV--MQKHMID--GRTVEAKKAVPRDDQNIQN----RNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123 (484)
Q Consensus 52 VeF~~~e~A~~Al--~~~~~i~--Gr~I~V~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~ 123 (484)
.+|.+.++|+.++ ++..... ++.+.+..+.......... ........+......++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788999998888 3332222 3333333321111000000 000011112233456899999999999999999
Q ss_pred HHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCCCCCC
Q 011518 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELSPG 189 (484)
Q Consensus 124 ~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~~~ 189 (484)
++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.+++|.|.++.++..++.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 999999999999999999999999999999999999999999888 899999999999988765443
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=143.04 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=81.8
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998876544
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=140.79 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=80.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
..+.++|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999899999999999999999999998888 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.++..+
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 42
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=145.36 Aligned_cols=87 Identities=31% Similarity=0.542 Sum_probs=80.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEee
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (484)
.....++|||+|||+++++++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++..|++++|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999988789999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.++...
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9776443
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=141.99 Aligned_cols=88 Identities=23% Similarity=0.403 Sum_probs=81.5
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|+.|.|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998876543
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=140.74 Aligned_cols=86 Identities=26% Similarity=0.430 Sum_probs=80.2
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeE-EEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDV-VVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v-~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
...++|||+|||+++++++|+++|++||.|++| .|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 999999999999999999999999999999887 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876544
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=142.57 Aligned_cols=82 Identities=18% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCc--eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h----hhcCe
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI--ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H----ELNGK 174 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~--I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~----~l~Gr 174 (484)
.....+|||+|||+++|+|+|+++|++||. |++|+|++|+.++++||||||+|+++++|++||+.++ . .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 355689999999999999999999999995 6799999999999999999999999999999999988 4 48999
Q ss_pred EEEEeecCC
Q 011518 175 MVEVKRAVP 183 (484)
Q Consensus 175 ~I~V~~a~~ 183 (484)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 46
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=142.91 Aligned_cols=88 Identities=35% Similarity=0.741 Sum_probs=81.6
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++||+. + +.|++++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 446678999999999999999999999999999999999999999999999999999999999999 6 89999999999
Q ss_pred ecCCCCCCCC
Q 011518 180 RAVPKELSPG 189 (484)
Q Consensus 180 ~a~~k~~~~~ 189 (484)
++.++...+.
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 2dh8_A 91 PCTPRGMQPS 100 (105)
T ss_dssp CSCCSSCCTT
T ss_pred EccCCCCCCC
Confidence 9998876543
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=9.5e-18 Score=141.61 Aligned_cols=88 Identities=25% Similarity=0.392 Sum_probs=80.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh---cCeEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL---NGKMV 176 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l---~Gr~I 176 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+.|+.++++++||||+|+++++|++||+.++ ..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 676 88999
Q ss_pred EEeecCCCCCCC
Q 011518 177 EVKRAVPKELSP 188 (484)
Q Consensus 177 ~V~~a~~k~~~~ 188 (484)
+|+++.++..+.
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998876543
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=143.69 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=73.7
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhh--hhhheeecccccccccceeEEEEeChhhHHHhh--hhcc----ccccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGE--VLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH----MIDGR 73 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~--V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~----~i~Gr 73 (484)
+.+..+|||+|||+++||++|+++|++||+ |.+|+|++|+.|+++||||||+|.++++|++|| ++.. .|++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 466789999999999999999999999995 779999999999999999999999999999999 5553 58999
Q ss_pred eeeecccCC
Q 011518 74 TVEAKKAVP 82 (484)
Q Consensus 74 ~I~V~~a~~ 82 (484)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 49
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=141.15 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=81.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEee-CCCCCccceeeeeeccHHHHHHHHHHH-h-hhhcCeEEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD-HNTQRPRGFGFITYDSEEAVDKVLLKT-F-HELNGKMVE 177 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d-~~tg~~rG~aFV~F~s~e~A~~Al~~~-~-~~l~Gr~I~ 177 (484)
.....++|||+|||+++++++|+++|++||.|+.|.|+++ +.++++++||||+|+++++|++||+.+ + +.|.+++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999999 788999999999999999999999998 6 899999999
Q ss_pred EeecCCCCCCC
Q 011518 178 VKRAVPKELSP 188 (484)
Q Consensus 178 V~~a~~k~~~~ 188 (484)
|+++.++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998876544
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=1.3e-17 Score=142.98 Aligned_cols=88 Identities=26% Similarity=0.482 Sum_probs=81.8
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|+.|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++...+
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998876554
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=139.22 Aligned_cols=84 Identities=15% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999998 78999999999999999999999988 899999999999
Q ss_pred cCCCCC
Q 011518 181 AVPKEL 186 (484)
Q Consensus 181 a~~k~~ 186 (484)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988764
No 52
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=140.57 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=78.5
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCC-CCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
..+.++|||+|||+++++++|+++|++|| |++|.|++++.+ ++++|||||+|+++++|++|| .++ +.|++++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35668999999999999999999999999 999999999987 899999999999999999999 776 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++..+.
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998876554
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=136.74 Aligned_cols=82 Identities=24% Similarity=0.457 Sum_probs=75.6
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||.++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++|++.++ +.|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456899999999999999999999999999999999999899999999999999999999999888 8999999999999
Q ss_pred CCC
Q 011518 182 VPK 184 (484)
Q Consensus 182 ~~k 184 (484)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=140.90 Aligned_cols=89 Identities=24% Similarity=0.406 Sum_probs=81.6
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-------hhhcC
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-------HELNG 173 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-------~~l~G 173 (484)
...+.++|||+|||+++++++|+++|++||.|+.|.|++|+.+++++|||||+|.+.++|++||+.++ +.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999884 68999
Q ss_pred eEEEEeecCCCCCCCC
Q 011518 174 KMVEVKRAVPKELSPG 189 (484)
Q Consensus 174 r~I~V~~a~~k~~~~~ 189 (484)
++|+|+++.++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999988765543
No 55
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=138.97 Aligned_cols=90 Identities=30% Similarity=0.471 Sum_probs=81.2
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEee
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (484)
...+.++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|+++++|++||+. .+.|+|++|+|++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 335678999999999999999999999999999999999999999999999999999999999984 4689999999999
Q ss_pred cCCCCCCCCCC
Q 011518 181 AVPKELSPGPS 191 (484)
Q Consensus 181 a~~k~~~~~~~ 191 (484)
+.++.....+.
T Consensus 90 a~~~~~~~~~~ 100 (103)
T 2cqg_A 90 PNSKQSQDSGP 100 (103)
T ss_dssp CCTTCCCCCSS
T ss_pred cCCCCcCCCCC
Confidence 99887655433
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-18 Score=142.38 Aligned_cols=86 Identities=41% Similarity=0.761 Sum_probs=80.2
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
|..+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4568899999999999999999999999999999999999989999999999999999999999 78999999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 98776543
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=139.50 Aligned_cols=87 Identities=26% Similarity=0.416 Sum_probs=80.0
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++|+++|+++|++||.|++|.|+.+ ++++++||||+|++.++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999988 78899999999999999999999888 89999999999
Q ss_pred ecCCCCCCCC
Q 011518 180 RAVPKELSPG 189 (484)
Q Consensus 180 ~a~~k~~~~~ 189 (484)
++.++..++.
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998876543
No 58
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=1.1e-17 Score=134.71 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=77.2
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
+.+|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++|++.++ +.|+|++|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999888 899999999999988
Q ss_pred CC
Q 011518 184 KE 185 (484)
Q Consensus 184 k~ 185 (484)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 59
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=1.9e-18 Score=166.87 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=76.6
Q ss_pred ccceEEecccccccchhHHHHHhhhcC--ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|++.++|++||+.++ ++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999888 899999999999
Q ss_pred cCCCC
Q 011518 181 AVPKE 185 (484)
Q Consensus 181 a~~k~ 185 (484)
++++.
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-18 Score=142.60 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=80.5
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
|..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999999989999999999999999999999 78999999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876544
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3.3e-18 Score=140.65 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=71.4
Q ss_pred ceEEecccccccchhHHHHHhhhcC--ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
.+|||+|||+++|+++|+++|++|| .|++|+|+.|+.+++++|||||+|+++++|++||+.++ ++|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999888 89999999999998
Q ss_pred CCCCCC
Q 011518 183 PKELSP 188 (484)
Q Consensus 183 ~k~~~~ 188 (484)
++....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 62
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=146.86 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=78.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++|| ++...|++++|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=139.14 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=79.1
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCC---CCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHN---TQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~---tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (484)
.+.++|||+|||+++++++|+++|++||.|+.|.|+.++. ++++++||||+|.++++|++||+.++ +.|++++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999987 66899999999999999999999887 8999999999
Q ss_pred eecCCCCCCC
Q 011518 179 KRAVPKELSP 188 (484)
Q Consensus 179 ~~a~~k~~~~ 188 (484)
+++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876544
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=136.70 Aligned_cols=83 Identities=28% Similarity=0.534 Sum_probs=78.4
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.+.+.++|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++|++.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCC
Q 011518 180 RAVP 183 (484)
Q Consensus 180 ~a~~ 183 (484)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 65
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=139.35 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=78.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++|+ |++|.|++|+.+++++|||||+|+++++|++|| .++ ..|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999996 999999999999999999999999999999999 666 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998876543
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=140.38 Aligned_cols=85 Identities=24% Similarity=0.478 Sum_probs=79.7
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999999989999999999999999999999 889999999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887653
No 67
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-18 Score=141.21 Aligned_cols=85 Identities=44% Similarity=0.774 Sum_probs=79.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999999989999999999999999999999 8899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.2e-18 Score=139.69 Aligned_cols=83 Identities=20% Similarity=0.518 Sum_probs=78.5
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecc
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~ 79 (484)
||.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++.+.+.+++|.|.+
T Consensus 2 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 2 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 4678899999999999999999999999999999999999889999999999999999999999 889999999999998
Q ss_pred cCCC
Q 011518 80 AVPR 83 (484)
Q Consensus 80 a~~~ 83 (484)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8764
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=1e-17 Score=136.37 Aligned_cols=81 Identities=40% Similarity=0.749 Sum_probs=75.9
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEee
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (484)
.....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.+++.|+|++|+|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998866889999999987
Q ss_pred c
Q 011518 181 A 181 (484)
Q Consensus 181 a 181 (484)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 70
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.5e-18 Score=140.97 Aligned_cols=85 Identities=38% Similarity=0.712 Sum_probs=79.2
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccC
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~ 81 (484)
+.+.++|||+|||+++|+++|+++|++||+|+.|+|++++.+++++|||||+|.++++|++||.+.+.|+++.|.|.++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 35678999999999999999999999999999999999998999999999999999999999977889999999999998
Q ss_pred CCCcc
Q 011518 82 PRDDQ 86 (484)
Q Consensus 82 ~~~~~ 86 (484)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2cqg_A 92 SKQSQ 96 (103)
T ss_dssp TTCCC
T ss_pred CCCcC
Confidence 76553
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=136.95 Aligned_cols=87 Identities=24% Similarity=0.560 Sum_probs=79.0
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|+|+.++. .+++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445679999999999999999999999999999999999865 389999999999999999999888 89999999999
Q ss_pred ecCCCCCCCC
Q 011518 180 RAVPKELSPG 189 (484)
Q Consensus 180 ~a~~k~~~~~ 189 (484)
++.++..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9998876543
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=141.67 Aligned_cols=86 Identities=22% Similarity=0.399 Sum_probs=80.2
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCcee--------eEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~--------~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (484)
....++|||+|||+++++++|+++|++||.|+ .|+|+.|+.+++++|||||+|.++++|++||+.++ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 79999999999999999999999999999999888 8999
Q ss_pred CeEEEEeecCCCCCC
Q 011518 173 GKMVEVKRAVPKELS 187 (484)
Q Consensus 173 Gr~I~V~~a~~k~~~ 187 (484)
+++|+|++++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887654
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=1.5e-17 Score=141.52 Aligned_cols=86 Identities=16% Similarity=0.307 Sum_probs=80.1
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|.++++|++||+.++ +.|+|++|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9887643
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=143.51 Aligned_cols=86 Identities=42% Similarity=0.762 Sum_probs=79.7
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|.++++|++||+...+.|++++|+|+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 35689999999999999999999999999999999999999999999999999999999999993389999999999999
Q ss_pred CCCCCC
Q 011518 183 PKELSP 188 (484)
Q Consensus 183 ~k~~~~ 188 (484)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887544
No 75
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=9.7e-18 Score=140.42 Aligned_cols=99 Identities=22% Similarity=0.388 Sum_probs=82.5
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
++|||+|||+++|+++|+++|++||+|++|+|+++ +++||||+|.++++|++|+ ++...+.+++|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6799999999999999999 7899999999999999876
Q ss_pred CcccccccCCCcccCCCCCCccceEEeccccc
Q 011518 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLAS 115 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~ 115 (484)
......... ........+|||++|+.
T Consensus 76 ~~~~~~~~~------~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRP------PARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSC------CCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCC------CccccCCCceecCCCCC
Confidence 543221111 11223467899999974
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=9.2e-18 Score=144.01 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=78.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 77
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=1.4e-17 Score=145.15 Aligned_cols=87 Identities=18% Similarity=0.353 Sum_probs=80.9
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.++++|++||+.++ +.|++++|.|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
+.++..+.
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98876554
No 78
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=1.3e-17 Score=142.97 Aligned_cols=85 Identities=26% Similarity=0.511 Sum_probs=79.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.++.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 56789999999999999999999999999999999999889999999999999999999999 7899999999999999
Q ss_pred CCCCccc
Q 011518 81 VPRDDQN 87 (484)
Q Consensus 81 ~~~~~~~ 87 (484)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8776543
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=139.61 Aligned_cols=88 Identities=23% Similarity=0.390 Sum_probs=80.4
Q ss_pred CCCccceEEecccccccchhHHHHHhhh-cCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hh-hcCeEEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQ-FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE-LNGKMVE 177 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~-~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~-l~Gr~I~ 177 (484)
...+.++|||+|||+++|+++|+++|++ ||.|++|.|+.|+ +++++|||||+|+++++|++||+.++ +. |++++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999888 77 9999999
Q ss_pred EeecCCCCCCCC
Q 011518 178 VKRAVPKELSPG 189 (484)
Q Consensus 178 V~~a~~k~~~~~ 189 (484)
|+++.++..+..
T Consensus 84 v~~a~~~~~~~~ 95 (104)
T 2dhg_A 84 LSVAIPKASRVK 95 (104)
T ss_dssp CCBCCCCCSCCC
T ss_pred EEEccCCCcCCC
Confidence 999988765543
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=136.27 Aligned_cols=82 Identities=20% Similarity=0.456 Sum_probs=77.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.+...++|||+|||+++++++|+++|++||.|++|.|++++.++++++||||+|+++++|++|++.++ +.|++++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecC
Q 011518 180 RAV 182 (484)
Q Consensus 180 ~a~ 182 (484)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 81
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=136.12 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=77.8
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|+|++|+.+ +++||||+|+++++|++||+.++ +.|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998654 68999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
+++++..++
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 998876544
No 82
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=3.3e-17 Score=138.04 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=78.6
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcC---eEEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG---KMVEV 178 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G---r~I~V 178 (484)
...++|||+|||+++++++|+++|++||.|++|.|+.++ ++++++||||+|++.++|++||+.++ +.|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999997 68999999999999999999999888 78888 99999
Q ss_pred eecCCCCCCC
Q 011518 179 KRAVPKELSP 188 (484)
Q Consensus 179 ~~a~~k~~~~ 188 (484)
+++.++..++
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9998876543
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=1.6e-17 Score=143.06 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=74.4
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
...+|||+|||+++|+++|+++|++||.|++|+|++|+. .+||||||+|+++++|++||+.++ +.|+|++|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999999964 479999999999999999999988 89999999999998
Q ss_pred CCCCCC
Q 011518 183 PKELSP 188 (484)
Q Consensus 183 ~k~~~~ 188 (484)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 765443
No 84
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=142.09 Aligned_cols=85 Identities=46% Similarity=0.954 Sum_probs=79.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 356899999999999999999999999999999999999989999999999999999999999 7888999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 877654
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=141.92 Aligned_cols=87 Identities=40% Similarity=0.735 Sum_probs=78.9
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeec
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
....++|||+|||+++++++|+++|++||.|++|.|++|+.+++++|||||+|+++++|++||+.+++.|+|++|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35678999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCCCCCC
Q 011518 182 VPKELSP 188 (484)
Q Consensus 182 ~~k~~~~ 188 (484)
.++..++
T Consensus 102 ~~~~~~~ 108 (109)
T 2rs2_A 102 FPRRAQP 108 (109)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8876543
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=139.60 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=78.8
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++++++|+++|++||.|++|.|+.|+.+++++|||||+|.++++|++|++.++ +.|.|++|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCC
Q 011518 182 VPKE 185 (484)
Q Consensus 182 ~~k~ 185 (484)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8765
No 87
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=1.9e-17 Score=133.79 Aligned_cols=80 Identities=30% Similarity=0.516 Sum_probs=76.2
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
.+.++|||+|||+++++++|+++|++||.|++|.|++|+.++++++||||+|+++++|++|++.++ +.|+|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 567899999999999999999999999999999999999999999999999999999999999888 8999999999987
Q ss_pred C
Q 011518 182 V 182 (484)
Q Consensus 182 ~ 182 (484)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=138.02 Aligned_cols=84 Identities=30% Similarity=0.546 Sum_probs=78.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhh-eeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEA-VIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v-~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
...++|||+|||+++|+++|+++|++||+|++| +|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 568999999999999999999999999999999 99999889999999999999999999999 789999999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 89
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=137.90 Aligned_cols=84 Identities=15% Similarity=0.325 Sum_probs=75.5
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++|+++|+++|++||.|+.|.|+.+ .++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999655 4589999999999999999999888 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99886543
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2e-17 Score=145.63 Aligned_cols=86 Identities=28% Similarity=0.531 Sum_probs=80.6
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.+.+.++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ ..|+|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCCC
Q 011518 180 RAVPKEL 186 (484)
Q Consensus 180 ~a~~k~~ 186 (484)
++.+++.
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988753
No 91
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=138.50 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=76.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcC-----e
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG-----K 174 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G-----r 174 (484)
.....++|||+|||++++++||+++|++||.|+.|.|+.| +||||+|+++++|++||+.++ ++|++ +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 799999999999999999988 89999 9
Q ss_pred EEEEeecCCCCCCCCCCC
Q 011518 175 MVEVKRAVPKELSPGPSR 192 (484)
Q Consensus 175 ~I~V~~a~~k~~~~~~~r 192 (484)
+|+|+++.++...+.+.+
T Consensus 84 ~i~V~~a~~~~~~~~rsr 101 (108)
T 1x4c_A 84 YIRVKVDGPRSPSYGRSR 101 (108)
T ss_dssp EEEEEESSCCSCCCCCSS
T ss_pred EEEEEeCCCCCCCCCCCC
Confidence 999999999876655444
No 92
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=140.51 Aligned_cols=84 Identities=26% Similarity=0.411 Sum_probs=78.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 46799999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.+....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 875543
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=9.4e-18 Score=136.52 Aligned_cols=79 Identities=52% Similarity=1.015 Sum_probs=74.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999999999989999999999999999999999 7777899999999865
No 94
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=141.01 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=78.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hh------ccccccce
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ------KHMIDGRT 74 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~------~~~i~Gr~ 74 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++ .+.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 45789999999999999999999999999999999999989999999999999999999999 66 88999999
Q ss_pred eeecccCCCCcc
Q 011518 75 VEAKKAVPRDDQ 86 (484)
Q Consensus 75 I~V~~a~~~~~~ 86 (484)
|.|.++.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876543
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=1.2e-17 Score=135.09 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=76.7
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
++.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++...+.+++|.|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4678899999999999999999999999999999999999889999999999999999999999 89999999999998
Q ss_pred ccC
Q 011518 79 KAV 81 (484)
Q Consensus 79 ~a~ 81 (484)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=8.1e-18 Score=138.27 Aligned_cols=80 Identities=21% Similarity=0.525 Sum_probs=70.5
Q ss_pred cceEEeeeccCCchHHHHHHHHhhh--hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G--~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
.+|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.++++|++|| ++...|++++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999999999999999999999999999999 89999999999999988
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7644
No 97
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=141.42 Aligned_cols=86 Identities=28% Similarity=0.541 Sum_probs=79.4
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|++.++|++||+.++ ..|++++|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999998 89999999999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
++++....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98776443
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=140.13 Aligned_cols=84 Identities=25% Similarity=0.485 Sum_probs=78.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999999999999999999999999999999999989999999999999999999999 7889999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 876543
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=1.8e-17 Score=139.87 Aligned_cols=85 Identities=27% Similarity=0.508 Sum_probs=78.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccc---ccceee
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI---DGRTVE 76 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i---~Gr~I~ 76 (484)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...+ .+++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 467899999999999999999999999999999999999999999999999999999999999 777777 889999
Q ss_pred ecccCCCCcc
Q 011518 77 AKKAVPRDDQ 86 (484)
Q Consensus 77 V~~a~~~~~~ 86 (484)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999876543
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=137.35 Aligned_cols=84 Identities=33% Similarity=0.665 Sum_probs=78.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=1.1e-17 Score=143.48 Aligned_cols=102 Identities=16% Similarity=0.283 Sum_probs=90.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|.|+++. .++|||||+|.++++|++|+ ++...+.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 457899999999999999999999999999999999764 45899999999999999999 8899999999999998
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCc
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI 131 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~ 131 (484)
.++... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 754321 467888999999999999985
No 102
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=137.46 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=78.6
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCcee-eEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeE----
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIIT-DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM---- 175 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~-~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~---- 175 (484)
....++|||+|||+++++++|+++|++||.|+ +|+|++|+.+++++|||||+|+++++|++|++.++ +.|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35678999999999999999999999999999 99999999999999999999999999999999888 8999999
Q ss_pred EEEeecCCCC
Q 011518 176 VEVKRAVPKE 185 (484)
Q Consensus 176 I~V~~a~~k~ 185 (484)
|+|.++++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997764
No 103
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=135.86 Aligned_cols=81 Identities=27% Similarity=0.507 Sum_probs=74.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++...+.++.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999 7889999999999998
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 104
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=3e-17 Score=136.22 Aligned_cols=82 Identities=16% Similarity=0.401 Sum_probs=78.1
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
.++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|++.++|++|++.++ ..|+|++|+|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999999999999999999888 899999999999988
Q ss_pred CCC
Q 011518 184 KEL 186 (484)
Q Consensus 184 k~~ 186 (484)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=144.40 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=78.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceee--EEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h----hhcCe
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITD--VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H----ELNGK 174 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~--v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~----~l~Gr 174 (484)
....++|||+|||+++|+++|+++|++||.|+. |+|++|+.++++||||||+|+++ +|++||+.++ + .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 99999999999999999999999 9999999998 7 99999
Q ss_pred EEEEeecCCCCCC
Q 011518 175 MVEVKRAVPKELS 187 (484)
Q Consensus 175 ~I~V~~a~~k~~~ 187 (484)
+|+|+++++++..
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 106
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=138.40 Aligned_cols=82 Identities=21% Similarity=0.471 Sum_probs=77.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 567999999999999999999999999999999999998 8999999999999999999999 7899999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87653
No 107
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=139.26 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=79.1
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecc-cccccccceeEEEEeChhhHHHhh--h-hccccccceeee
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKD-RATGRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEA 77 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d-~~tg~skG~aFVeF~~~e~A~~Al--~-~~~~i~Gr~I~V 77 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ +.++++++||||+|.++++|++|| + +.+.|.+++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456899999999999999999999999999999999999 789999999999999999999999 6 789999999999
Q ss_pred cccCCCCcc
Q 011518 78 KKAVPRDDQ 86 (484)
Q Consensus 78 ~~a~~~~~~ 86 (484)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876554
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=140.34 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=74.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEee
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (484)
.+...++|||+|||+++||+||+++|++||. ++|+|++|+ ++++||||||+|+++++|++||++..+.|++|.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3456689999999999999999999999995 599999998 79999999999999999999997533899999999999
Q ss_pred cCCCC
Q 011518 181 AVPKE 185 (484)
Q Consensus 181 a~~k~ 185 (484)
+.+++
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88765
No 109
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=137.71 Aligned_cols=84 Identities=25% Similarity=0.501 Sum_probs=77.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccc---cccccceeEEEEeChhhHHHhh--hhccccccceeee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRA---TGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~---tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V 77 (484)
.+.++|||+|||+++||++|+++|++||+|++|.|++++. |+++++||||+|.++++|++|| ++.+.|.+++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5789999999999999999999999999999999999876 6699999999999999999999 6899999999999
Q ss_pred cccCCCCcc
Q 011518 78 KKAVPRDDQ 86 (484)
Q Consensus 78 ~~a~~~~~~ 86 (484)
+++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 110
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=140.81 Aligned_cols=83 Identities=40% Similarity=0.793 Sum_probs=76.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++. .|.+++|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999 554 89999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 111
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.1e-17 Score=140.46 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=78.2
Q ss_pred CccceEEeccccc------ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcC-e
Q 011518 103 ARTKKIFVGGLAS------TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG-K 174 (484)
Q Consensus 103 ~~~~~LfVgnLp~------~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G-r 174 (484)
...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|+++++|++||+.++ +.|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999888 89999 9
Q ss_pred EEEEeecCCCC
Q 011518 175 MVEVKRAVPKE 185 (484)
Q Consensus 175 ~I~V~~a~~k~ 185 (484)
+|+|.++.+++
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999997754
No 112
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=138.47 Aligned_cols=85 Identities=32% Similarity=0.598 Sum_probs=79.8
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||..+++++|+++|++||.|++|.|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCC
Q 011518 180 RAVPKE 185 (484)
Q Consensus 180 ~a~~k~ 185 (484)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998874
No 113
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=133.39 Aligned_cols=83 Identities=14% Similarity=0.384 Sum_probs=76.9
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCC-ccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR-PRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~-~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
..++|||+|||.++++++|+++|++||.|++|.|+.++.++. +++||||+|+++++|++|++.++ ..|+|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999987766 89999999999999999999888 8999999999999
Q ss_pred CCCCC
Q 011518 182 VPKEL 186 (484)
Q Consensus 182 ~~k~~ 186 (484)
.++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 114
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=137.00 Aligned_cols=85 Identities=14% Similarity=0.270 Sum_probs=78.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCC
Q 011518 180 RAVPKE 185 (484)
Q Consensus 180 ~a~~k~ 185 (484)
++..+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987653
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.5e-18 Score=144.14 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=78.6
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhh-hhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEV-LEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V-~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++||++|+++|++||.| +.|+|++|+ ++++||||||+|.++++|++|| ++.+.|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4568999999999999999999999999999 899999998 9999999999999999999999 888899999999999
Q ss_pred cCCCCccc
Q 011518 80 AVPRDDQN 87 (484)
Q Consensus 80 a~~~~~~~ 87 (484)
+.+++...
T Consensus 91 a~~~~~~~ 98 (114)
T 2cpy_A 91 VTLEDMRE 98 (114)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 98765443
No 116
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=133.82 Aligned_cols=81 Identities=9% Similarity=0.101 Sum_probs=75.1
Q ss_pred CccceEEecccccccchhHHH----HHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
...++|||+|||+++++++|+ ++|++||.|++|+|+.|+.+ |+||||+|+++++|++||+.++ .+|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999999875 8899999999999999999888 899999999
Q ss_pred EeecCCCCC
Q 011518 178 VKRAVPKEL 186 (484)
Q Consensus 178 V~~a~~k~~ 186 (484)
|++++++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 117
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=135.51 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=77.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceee--------EEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l 171 (484)
.+...++|||+|||+++++++|+++|++||.|++ |+|+.|+.+++++|||||+|+++++|++|++.++ ..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567799999999999999999999999999999 9999999999999999999999999999999888 899
Q ss_pred cCeEEEEeecC
Q 011518 172 NGKMVEVKRAV 182 (484)
Q Consensus 172 ~Gr~I~V~~a~ 182 (484)
.|++|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 118
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=5.1e-18 Score=151.54 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=73.7
Q ss_pred cceeEEEEeChhhHHHhhhhccccc-cceeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHH
Q 011518 47 RGFGFIVFADPAVAERVVMQKHMID-GRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125 (484)
Q Consensus 47 kG~aFVeF~~~e~A~~Al~~~~~i~-Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~ 125 (484)
+++||.+|..++.+..++.+...+. +...--... ...........++|||+|||+++||+||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g--------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~ 66 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG--------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNF 66 (139)
T ss_dssp ----------------------------------------------------------CCCCEECCSCCTTCCHHHHHHH
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCCC--------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 3678888888887776662221111 111100000 0001113345689999999999999999999
Q ss_pred hhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCCCC
Q 011518 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 126 F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k~~ 186 (484)
|++|| |++|+|++|++ +++||||||+|+++++|++||++..++|++|.|+|.++.+++.
T Consensus 67 F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 67 FSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred HHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 99999 77999999986 9999999999999999999994433899999999999887654
No 119
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-17 Score=140.33 Aligned_cols=83 Identities=27% Similarity=0.455 Sum_probs=78.3
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|+.|+|++++.++++++||||+|.++++|++|| ++.+.|.++.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 46789999999999999999999999999999999999989999999999999999999999 7889999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.8e-17 Score=137.42 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCccceEEecccccccchhHHH---HHhhhcCceeeEEEEeeCCC---CCccceeeeeeccHHHHHHHHHHHh-hhhcCe
Q 011518 102 PARTKKIFVGGLASTVTESDFK---KYFDQFGIITDVVVMYDHNT---QRPRGFGFITYDSEEAVDKVLLKTF-HELNGK 174 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~---~~F~~~G~I~~v~i~~d~~t---g~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr 174 (484)
....++|||+|||+++++++|+ ++|++||.|++|.|++++.+ ++++|||||+|+++++|++||+.++ +.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456899999999999999999 99999999999999998764 3567999999999999999999988 899999
Q ss_pred EEEEeecCCCCC
Q 011518 175 MVEVKRAVPKEL 186 (484)
Q Consensus 175 ~I~V~~a~~k~~ 186 (484)
+|+|+++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988763
No 121
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=2.3e-17 Score=132.79 Aligned_cols=80 Identities=29% Similarity=0.547 Sum_probs=75.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
+.+|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++...+.+++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999999889999999999999999999999 789999999999999987
Q ss_pred CC
Q 011518 83 RD 84 (484)
Q Consensus 83 ~~ 84 (484)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 122
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=138.34 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=74.5
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEV 178 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~V 178 (484)
+.+.++|||+|||+++||+||+++|++||.|++|+|+++ ||||||+|+++++|++|++.++ .+|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999865 6899999999999999999764 5799999999
Q ss_pred eecCCCCCCCCC
Q 011518 179 KRAVPKELSPGP 190 (484)
Q Consensus 179 ~~a~~k~~~~~~ 190 (484)
.++++++.+...
T Consensus 87 ~~A~~~~~~~~~ 98 (105)
T 1sjq_A 87 QFSNHKELKTDS 98 (105)
T ss_dssp CCCSSSSCCCTT
T ss_pred EEcCCCCCCccc
Confidence 999988766543
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4.6e-17 Score=140.13 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=76.6
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ .+|++++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecC
Q 011518 180 RAV 182 (484)
Q Consensus 180 ~a~ 182 (484)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 124
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=2.4e-17 Score=140.65 Aligned_cols=84 Identities=44% Similarity=0.849 Sum_probs=75.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ...+.|.++.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 457899999999999999999999999999999999999989999999999999999999999 4458999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 125
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=133.66 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=76.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|+|++++. +++++||||+|+++++|++|++.++ +.|++++|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999986 8899999999999999999999888 89999999999
Q ss_pred ecCC
Q 011518 180 RAVP 183 (484)
Q Consensus 180 ~a~~ 183 (484)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8853
No 126
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=7.5e-17 Score=132.41 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=77.1
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|+.|+|+++ ++++++||||+|++.++|++|++.++ +.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999874 68899999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
++++...
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9887644
No 127
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=2.4e-17 Score=130.36 Aligned_cols=74 Identities=42% Similarity=0.820 Sum_probs=71.1
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++.+.|.+++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 6999999999999999999999999999999999989999999999999999999999 8899999999999875
No 128
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=6e-17 Score=132.02 Aligned_cols=81 Identities=21% Similarity=0.452 Sum_probs=75.9
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|+++++|++|+ .++ +.|++++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999989999999999999999999999 666 89999999999997
Q ss_pred CCC
Q 011518 183 PKE 185 (484)
Q Consensus 183 ~k~ 185 (484)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-17 Score=132.63 Aligned_cols=80 Identities=21% Similarity=0.453 Sum_probs=74.8
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
.+.++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++|++.++ +.|+++.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999999999999999999999999999999888 8999999988765
Q ss_pred C
Q 011518 182 V 182 (484)
Q Consensus 182 ~ 182 (484)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 130
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-17 Score=141.54 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=75.1
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|.|++++. +++||||||+|.++++|++|| ++.+.|.++.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999986 999999999999999999999 8889999999999877
Q ss_pred CC
Q 011518 81 VP 82 (484)
Q Consensus 81 ~~ 82 (484)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 55
No 131
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=2.3e-17 Score=136.30 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
.+..++|||+|||++++++||+++|++||.|++++++.++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999888 899999999998
Q ss_pred cCC
Q 011518 181 AVP 183 (484)
Q Consensus 181 a~~ 183 (484)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 132
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-17 Score=135.06 Aligned_cols=80 Identities=26% Similarity=0.410 Sum_probs=75.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999989999999999999999999999 7899999999999987
Q ss_pred CC
Q 011518 81 VP 82 (484)
Q Consensus 81 ~~ 82 (484)
.+
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 133
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=139.72 Aligned_cols=85 Identities=21% Similarity=0.393 Sum_probs=78.8
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhh--------hheeecccccccccceeEEEEeChhhHHHhh--hhccccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVL--------EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~--------~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~ 71 (484)
+.+.++|||+|||+++|+++|+++|++||+|+ .|+|++++.+++++|||||+|.++++|++|| ++.+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34689999999999999999999999999999 7999999889999999999999999999999 7999999
Q ss_pred cceeeecccCCCCcc
Q 011518 72 GRTVEAKKAVPRDDQ 86 (484)
Q Consensus 72 Gr~I~V~~a~~~~~~ 86 (484)
+++|.|.++.++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999876543
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.3e-17 Score=137.17 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=77.5
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceee-EEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~-v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++|++||+++|++||.|++ |.|+.+ .+++++|||||+|+++++|++||++..+.|.+|.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999988 888888 78999999999999999999999994489999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
++.+++..
T Consensus 90 ~~~~~~~~ 97 (104)
T 1wg5_A 90 KSSRAEVR 97 (104)
T ss_dssp EECTTTSC
T ss_pred ECCHHHHH
Confidence 99876644
No 135
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=137.40 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=77.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhh-hhhheee-cccccccccceeEEEEeChhhHHHhh--hh--ccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE-VLEAVIM-KDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~-V~~v~I~-~d~~tg~skG~aFVeF~~~e~A~~Al--~~--~~~i~Gr~I~ 76 (484)
.+.++|||+|||+++|+++|+++|++||+ |++|.|+ .++.+++++|||||+|.++++|++|+ ++ ...+.+++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 56789999999999999999999999998 9999998 78888999999999999999999999 54 5899999999
Q ss_pred ecccCCCCcc
Q 011518 77 AKKAVPRDDQ 86 (484)
Q Consensus 77 V~~a~~~~~~ 86 (484)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876653
No 136
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=136.21 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=77.6
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|++|+|+.++ ++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 48999999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.+...+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 8765443
No 137
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-17 Score=138.63 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=77.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++.+.|.+++|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45688999999999999999999999999999999999989999999999999999999999 7899999999999998
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 138
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-17 Score=139.60 Aligned_cols=86 Identities=26% Similarity=0.598 Sum_probs=80.3
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|+ ++...|.++.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 456899999999999999999999999999999999999889999999999999999999999 789999999999999
Q ss_pred cCCCCccc
Q 011518 80 AVPRDDQN 87 (484)
Q Consensus 80 a~~~~~~~ 87 (484)
+.++....
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 98776543
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=143.97 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=77.0
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhh--heeecccccccccceeEEEEeChhhHHHhh--hhcc----ccccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH----MIDGR 73 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~--v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~----~i~Gr 73 (484)
+...++|||+|||+++||++|+++|++||+|+. |+|++|+.++++||||||+|.++ +|++|| ++.. .|+++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 99999999999999999999999 999999 7888 99999
Q ss_pred eeeecccCCCCcc
Q 011518 74 TVEAKKAVPRDDQ 86 (484)
Q Consensus 74 ~I~V~~a~~~~~~ 86 (484)
+|.|+++.++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=2e-17 Score=143.23 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=76.3
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhh---hhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE---VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~---V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~ 78 (484)
.+.++|||+|||+++||++|+++|++||+ |+.|+|++++. +++||||||+|.++++|++|| ++.+.|.+|.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45789999999999999999999999999 89999999975 999999999999999999999 88999999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
++.+++..
T Consensus 94 ~a~~~~~~ 101 (118)
T 2db1_A 94 KSHRTEMD 101 (118)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 98765543
No 141
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=136.44 Aligned_cols=82 Identities=26% Similarity=0.418 Sum_probs=76.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhh-hheeecccccccccceeEEEEeChhhHHHhh--hhccccccce----e
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVL-EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRT----V 75 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~-~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~----I 75 (484)
...++|||+|||+++||++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++|+ ++...|.++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5679999999999999999999999999999 9999999999999999999999999999999 7889999999 9
Q ss_pred eecccCCCC
Q 011518 76 EAKKAVPRD 84 (484)
Q Consensus 76 ~V~~a~~~~ 84 (484)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 998887653
No 142
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-17 Score=138.01 Aligned_cols=83 Identities=16% Similarity=0.434 Sum_probs=77.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc-ccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT-GRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t-g~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++||++|+++|++|| |++|.|++++.+ ++++|||||+|.++++|++|| ++.+.|.+++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4578999999999999999999999999 999999999887 899999999999999999999 8889999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876553
No 143
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=135.38 Aligned_cols=79 Identities=24% Similarity=0.535 Sum_probs=75.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++...|.+++|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46789999999999999999999999999999999999989999999999999999999999 7899999999999886
Q ss_pred C
Q 011518 81 V 81 (484)
Q Consensus 81 ~ 81 (484)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=9.9e-18 Score=140.75 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=77.1
Q ss_pred ccccceEEeeecc------CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccc-c
Q 011518 3 MELGKLFIGGISW------DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG-R 73 (484)
Q Consensus 3 ~d~r~LfVgnLP~------~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G-r 73 (484)
...++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++|| ++...|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3478999999999 9999999999999999999999999999999999999999999999999 89999999 9
Q ss_pred eeeecccCCCC
Q 011518 74 TVEAKKAVPRD 84 (484)
Q Consensus 74 ~I~V~~a~~~~ 84 (484)
+|.|.++.+++
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999987644
No 145
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-17 Score=130.02 Aligned_cols=76 Identities=43% Similarity=0.773 Sum_probs=73.2
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeec
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
++|||+|||+++++++|+++|++||.|.+|.|++++.+++++|||||+|+++++|++|++.+++.|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999889999999999987
No 146
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=5e-17 Score=134.90 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=78.1
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
+++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ +++..+.++.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999999989999999999999999999999 789999999999999988
Q ss_pred CCccc
Q 011518 83 RDDQN 87 (484)
Q Consensus 83 ~~~~~ 87 (484)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76543
No 147
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=137.28 Aligned_cols=83 Identities=25% Similarity=0.591 Sum_probs=77.2
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|| ++...|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356899999999999999999999999999999999998 8899999999999999999999 789999999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876654
No 148
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.9e-17 Score=137.33 Aligned_cols=82 Identities=13% Similarity=0.368 Sum_probs=77.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
...++|||+|||+++||++|+++|++|+ |++|+|++++.+++++|||||+|.++++|++|| ++...|.+++|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 4678999999999999999999999996 999999999989999999999999999999999 88999999999999998
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-17 Score=138.20 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=75.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhh-heeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLE-AVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~-v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|++ |.|+++ .+++++|||||+|.++++|++|| ++.+.|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 46789999999999999999999999999997 888888 68999999999999999999999 8888999999999988
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.+++.
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76544
No 150
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=135.80 Aligned_cols=83 Identities=23% Similarity=0.486 Sum_probs=77.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHh-hhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccc-cccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHM-IDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~-~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~-i~Gr~I~V~ 78 (484)
...++|||+|||+++|+++|+++|++ ||+|++|+|++++ ++++++||||+|.++++|++|| ++... |.+++|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999998 9999999999999999999999 78888 999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99776543
No 151
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=131.47 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||++++++||+++|++| .|++|.|+++ .+++++|||||+|+++++|++||+ ++ ..|++++|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 779999999999999999999999 77 899999999999
Q ss_pred cCCCC
Q 011518 181 AVPKE 185 (484)
Q Consensus 181 a~~k~ 185 (484)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98774
No 152
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-17 Score=139.99 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=73.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.+.++|||+|||+++||+||+++|++||. ++|+|++++ ++++||||||+|.++++|++|| ++.+.|.+|.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 46789999999999999999999999995 599999998 8999999999999999999999 88899999999998876
Q ss_pred CCC
Q 011518 82 PRD 84 (484)
Q Consensus 82 ~~~ 84 (484)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 153
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-17 Score=135.92 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=75.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++||++|+++|++||+|+++++++++.++++++||||+|.++++|++|| ++...|.+++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34688999999999999999999999999999999999889999999999999999999999 7888999999999988
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 154
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=1.2e-16 Score=135.09 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44667899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred ecC
Q 011518 180 RAV 182 (484)
Q Consensus 180 ~a~ 182 (484)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 155
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=3e-17 Score=146.07 Aligned_cols=83 Identities=19% Similarity=0.299 Sum_probs=76.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCc---eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGI---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
.....++|||+|||+++|++||+++|++||. |++|+|++|+. +++||||||+|+++++|++||+ ++ ++|++|+|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999999 66 89999999
Q ss_pred EEeecCCCC
Q 011518 177 EVKRAVPKE 185 (484)
Q Consensus 177 ~V~~a~~k~ 185 (484)
+|.++.+++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987664
No 156
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=4.7e-17 Score=143.27 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=77.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...|.+++|.|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 157
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=5.4e-17 Score=143.75 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=78.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 158
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=3.2e-17 Score=135.47 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=73.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|++||+|++++|++++.++++++||||+|.++++|++|| ++.+.|.+++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999999999999999989999999999999999999999 78999999999999875
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=139.12 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=77.3
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCce-eeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (484)
+...++|||+|||+++|++||+++|++||.| ..|+|++|+ +++++|||||+|+++++|++||++..+.|++++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3556899999999999999999999999999 899999998 89999999999999999999999833899999999999
Q ss_pred cCCCCC
Q 011518 181 AVPKEL 186 (484)
Q Consensus 181 a~~k~~ 186 (484)
+.+++.
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987753
No 160
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-17 Score=141.40 Aligned_cols=83 Identities=43% Similarity=0.886 Sum_probs=77.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
+.++|||+|||+++|+++|+++|++||+|+.|.|++++.+++++|||||+|.++++|++|| .+.+.|.++.|.|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999999989999999999999999999999 777899999999999987
Q ss_pred CCcc
Q 011518 83 RDDQ 86 (484)
Q Consensus 83 ~~~~ 86 (484)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7553
No 161
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=5.3e-17 Score=136.73 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=76.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccc---ceeee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG---RTVEA 77 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G---r~I~V 77 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...+.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 357899999999999999999999999999999999998 7999999999999999999999 78888888 99999
Q ss_pred cccCCCCcc
Q 011518 78 KKAVPRDDQ 86 (484)
Q Consensus 78 ~~a~~~~~~ 86 (484)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 162
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.1e-17 Score=135.24 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=75.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+ +++||||+|.++++|++|| ++.+.|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 356799999999999999999999999999999999998643 6899999999999999999 789999999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 163
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9e-17 Score=137.36 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=75.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++.+.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999997 6899999999999999999999 7999999999999998
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 164
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=3.9e-16 Score=135.70 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||.++++++|+++|++||.|++|+|+.++ +++++|||||+|+++++|++|++.++ ..|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44667899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
++.++...+
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998876544
No 165
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=133.18 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++| ..|.|+.++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999977 478889998899999999999999999999999888 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99887643
No 166
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=132.24 Aligned_cols=82 Identities=22% Similarity=0.483 Sum_probs=76.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccccc-ccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGR-ARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~-skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++. +++||||+|.++++|++|+ ++...+.++.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 5678999999999999999999999999999999999987765 9999999999999999999 799999999999999
Q ss_pred cCCCC
Q 011518 80 AVPRD 84 (484)
Q Consensus 80 a~~~~ 84 (484)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 167
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-17 Score=137.34 Aligned_cols=85 Identities=25% Similarity=0.544 Sum_probs=79.5
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++|++.++ ..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 456899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 011518 182 VPKELS 187 (484)
Q Consensus 182 ~~k~~~ 187 (484)
.++..+
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 887543
No 168
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=132.98 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=73.6
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEEEe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEVK 179 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~V~ 179 (484)
.+.++|||+|||+.++++||+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998864 7899999999999999999765 46999999999
Q ss_pred ecCCCCCCCCC
Q 011518 180 RAVPKELSPGP 190 (484)
Q Consensus 180 ~a~~k~~~~~~ 190 (484)
++++++.+...
T Consensus 87 ~a~~~~~~~~~ 97 (101)
T 2cq1_A 87 YSNHKELKTSG 97 (101)
T ss_dssp ECSCSSCCCCC
T ss_pred EcCcccCcCCC
Confidence 99988776543
No 169
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=8e-17 Score=134.82 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=75.6
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
+.++|||+|||+++|+++|+++|++||+|.. .++.++.+++++|||||+|.++++|++|| ++.+.|.++.|.|.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 5789999999999999999999999999999 78888889999999999999999999999 899999999999999987
Q ss_pred CCc
Q 011518 83 RDD 85 (484)
Q Consensus 83 ~~~ 85 (484)
+..
T Consensus 95 ~~~ 97 (101)
T 1fj7_A 95 RDG 97 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 170
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=134.04 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=74.6
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. +++++||||+|.++++|++|+ ++.+.|.+++|.|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45679999999999999999999999999999999999975 899999999999999999999 789999999999998
Q ss_pred cCC
Q 011518 80 AVP 82 (484)
Q Consensus 80 a~~ 82 (484)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 171
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-17 Score=139.26 Aligned_cols=83 Identities=19% Similarity=0.411 Sum_probs=77.3
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++++++|+++|++||.|++|.|+.|+.+++++|||||+|++.++|++|| .++ +.|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999 766 8999999999999
Q ss_pred CCCCC
Q 011518 182 VPKEL 186 (484)
Q Consensus 182 ~~k~~ 186 (484)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 77653
No 172
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.7e-17 Score=138.36 Aligned_cols=88 Identities=24% Similarity=0.316 Sum_probs=76.5
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
..+.++|||+|||+++|+++|+++|++||.|+.|.+..+..+++++|||||+|++.++|++||+.++ +.|++++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999655444444478899999999999999999999888 899999999999
Q ss_pred cCCCCCCCC
Q 011518 181 AVPKELSPG 189 (484)
Q Consensus 181 a~~k~~~~~ 189 (484)
+.++..+..
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998776543
No 173
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-17 Score=143.12 Aligned_cols=83 Identities=17% Similarity=0.362 Sum_probs=77.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|.++.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 45689999999999999999999999999999999999989999999999999999999999 88999999999999987
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 6543
No 174
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=8.7e-17 Score=138.77 Aligned_cols=83 Identities=37% Similarity=0.667 Sum_probs=77.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++ ++++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999998 8999999999999999999999 7899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 175
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4e-17 Score=128.93 Aligned_cols=74 Identities=36% Similarity=0.645 Sum_probs=70.5
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++.+.+.+++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999999989999999999999999999999 7788999999999864
No 176
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=3.2e-16 Score=131.82 Aligned_cols=82 Identities=30% Similarity=0.485 Sum_probs=73.4
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
..+.++|||+|||+++|+++|+++|++||.|++|.|+ ++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999986 3499999999999999999888 899999999999
Q ss_pred cCCCCCCCCCC
Q 011518 181 AVPKELSPGPS 191 (484)
Q Consensus 181 a~~k~~~~~~~ 191 (484)
+.++..++...
T Consensus 80 a~~~~~~~~~~ 90 (103)
T 2dgu_A 80 AKPPDQKRKER 90 (103)
T ss_dssp CCCCCCCCCCC
T ss_pred cCCCcccchhh
Confidence 98877655443
No 177
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=5.1e-17 Score=138.13 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=77.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45788999999999999999999999999999999999989999999999999999999999 7899999999999998
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 76543
No 178
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-17 Score=138.06 Aligned_cols=82 Identities=29% Similarity=0.643 Sum_probs=77.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 179
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.9e-17 Score=137.21 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=70.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hh--ccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~--~~~i~Gr~I~V~ 78 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ ++ ...|.+++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999986 589999999999999999 33 368999999999
Q ss_pred ccCCCCccc
Q 011518 79 KAVPRDDQN 87 (484)
Q Consensus 79 ~a~~~~~~~ 87 (484)
++.++....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998766544
No 180
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4e-17 Score=129.42 Aligned_cols=74 Identities=47% Similarity=0.931 Sum_probs=70.6
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++ +.+.+++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999999999999989999999999999999999999 55 8999999999876
No 181
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=128.90 Aligned_cols=80 Identities=21% Similarity=0.518 Sum_probs=72.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+ |+||||+|+++++|++|++.++ ..|++++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567999999999999999999999999999999997 5799999999999999999888 79999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
+++++....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998876543
No 182
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=134.81 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=78.8
Q ss_pred CccceEEecccccccchhHHHHHhhhcCc-eeeEEEE-eeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGI-ITDVVVM-YDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVE 177 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~-I~~v~i~-~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~ 177 (484)
...++|||+|||+++++++|+++|++||. |++|.|+ .++.+++++|||||+|.++++|++|++.++ ..|++++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 888888999999999999999999999874 689999999
Q ss_pred EeecCCCCCCC
Q 011518 178 VKRAVPKELSP 188 (484)
Q Consensus 178 V~~a~~k~~~~ 188 (484)
|+++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 183
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-17 Score=141.45 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=74.8
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
..+.++|||+|||+++||+||+++|++| .|++|+|++|+. +++||||||+|.++++|++|| ++.+.|.+|.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 899999999974 999999999999999999999 8899999999999888
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.+++.
T Consensus 91 ~~~~~ 95 (109)
T 2dnn_A 91 TERQW 95 (109)
T ss_dssp CHHHH
T ss_pred Cccch
Confidence 65543
No 184
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=8.4e-17 Score=146.35 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=76.8
Q ss_pred ccceEEecccccccchhHHHHHhhhcC--ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
..++|||+|||+++|+++|+++|++|| .|++|+|+.|+.++++||||||+|+++++|++||+.++ +.|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999988 899999999999
Q ss_pred cCCCC
Q 011518 181 AVPKE 185 (484)
Q Consensus 181 a~~k~ 185 (484)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97653
No 185
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=4.2e-17 Score=140.38 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=74.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|++++|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999 7899999999999876
Q ss_pred C
Q 011518 81 V 81 (484)
Q Consensus 81 ~ 81 (484)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 186
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=134.61 Aligned_cols=83 Identities=27% Similarity=0.558 Sum_probs=76.0
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. .+++||||+|.++++|++|| ++.+.|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45689999999999999999999999999999999999864 38999999999999999999 788999999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876554
No 187
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=135.98 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=74.2
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEEEe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEVK 179 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~V~ 179 (484)
.+.++|||+|||+++||+||+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999875 6899999999999999999876 36999999999
Q ss_pred ecCCCCCCCCC
Q 011518 180 RAVPKELSPGP 190 (484)
Q Consensus 180 ~a~~k~~~~~~ 190 (484)
++++++.+...
T Consensus 103 ~a~~k~~~~~~ 113 (119)
T 2ad9_A 103 FSNHKELKTDS 113 (119)
T ss_dssp ECSSSSCCCCC
T ss_pred EccCCCCCccc
Confidence 99988776543
No 188
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=5e-17 Score=147.87 Aligned_cols=82 Identities=21% Similarity=0.529 Sum_probs=75.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhh--hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G--~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
.+.++|||+|||+++||++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++|| ++...|.++.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999999999999999999999999999999999 68999999999999
Q ss_pred ccCCCC
Q 011518 79 KAVPRD 84 (484)
Q Consensus 79 ~a~~~~ 84 (484)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 987654
No 189
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-17 Score=132.16 Aligned_cols=79 Identities=20% Similarity=0.477 Sum_probs=74.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...|.++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999989999999999999999999999 7899999999988765
Q ss_pred C
Q 011518 81 V 81 (484)
Q Consensus 81 ~ 81 (484)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 190
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=131.41 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=73.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.| +|+.+ .++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567999999999999999999999999977 56666 668899999999999999999999888 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887543
No 191
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=8.2e-17 Score=140.17 Aligned_cols=85 Identities=20% Similarity=0.380 Sum_probs=78.9
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|| ++...|.++.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 346789999999999999999999999999999999999889999999999999999999999 799999999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9766544
No 192
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=2.3e-16 Score=136.96 Aligned_cols=82 Identities=18% Similarity=0.428 Sum_probs=76.3
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+|||+++|+++|+++|++||.|++|.|+.|+.+++++|||||+|+++++|++|| .++ +.|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999999999999999999999999999 566 89999999999997
Q ss_pred CCCC
Q 011518 183 PKEL 186 (484)
Q Consensus 183 ~k~~ 186 (484)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 193
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=131.61 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h--hhcCeEEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H--ELNGKMVEV 178 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~--~l~Gr~I~V 178 (484)
..+.++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|+++++|++|++.++ . .|+|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356789999999999999999999999999999998753 6899999999999999999876 3 599999999
Q ss_pred eecCCCCCCC
Q 011518 179 KRAVPKELSP 188 (484)
Q Consensus 179 ~~a~~k~~~~ 188 (484)
.++++++.++
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998876554
No 194
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=8.9e-17 Score=142.52 Aligned_cols=84 Identities=30% Similarity=0.492 Sum_probs=78.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.+....
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 195
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=4.9e-17 Score=133.10 Aligned_cols=79 Identities=22% Similarity=0.631 Sum_probs=71.7
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.+++ |++|+ +++..+.+++|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 78999999999999999999999999999999999989999999999999999 99999 7899999999999998875
Q ss_pred Cc
Q 011518 84 DD 85 (484)
Q Consensus 84 ~~ 85 (484)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 196
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.4e-17 Score=137.43 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=73.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
...++|||+|||+++|++||+++|++| .|++|+|++|+. ++++|||||+|+++++|++||++..++|.+|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 446799999999999999999999999 899999999976 899999999999999999999544489999999999886
Q ss_pred CCC
Q 011518 183 PKE 185 (484)
Q Consensus 183 ~k~ 185 (484)
+++
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 197
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=131.61 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=69.8
Q ss_pred CccceEEeccccc-ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h--hhcCeEEEE
Q 011518 103 ARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H--ELNGKMVEV 178 (484)
Q Consensus 103 ~~~~~LfVgnLp~-~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~--~l~Gr~I~V 178 (484)
.+.++|||+|||+ ++|++||+++|++||.|++|.|+++ |+||||+|+++++|++||+.++ . +|+|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999865 4699999999999999999887 3 599999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
.+++++.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 198
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=9e-17 Score=139.54 Aligned_cols=82 Identities=20% Similarity=0.489 Sum_probs=76.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|.++.|.|.++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35789999999999999999999999999999999999889999999999999999999999 88899999999999987
Q ss_pred CCC
Q 011518 82 PRD 84 (484)
Q Consensus 82 ~~~ 84 (484)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 199
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=131.31 Aligned_cols=81 Identities=14% Similarity=0.360 Sum_probs=75.6
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|||+|||+++|+++|+++|++| +|++|.|+++ .+++++|||||+|.++++|++|| ++...|.++.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3567899999999999999999999999 9999999999 68999999999999999999999 8889999999999998
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 200
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=135.00 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=74.0
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
...++|||+|||+++|+++|+++|++||.|++|.|++|+. +++||||||+|+++++|++||+...+.|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568999999999999999999999999999999999987 999999999999999999999943389999999999875
Q ss_pred C
Q 011518 183 P 183 (484)
Q Consensus 183 ~ 183 (484)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=1.2e-16 Score=144.59 Aligned_cols=83 Identities=20% Similarity=0.389 Sum_probs=78.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|+.|+|++++.++++++||||+|.++++|++|| ++.+.|.+++|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999989999999999999999999999 7899999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 202
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=5.6e-17 Score=128.17 Aligned_cols=75 Identities=55% Similarity=0.956 Sum_probs=70.6
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeec
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
+|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|+++++|++|+++..+.|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999984348999999999875
No 203
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=7.7e-17 Score=135.10 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeC-CCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH-NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~-~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
....++|||+|||+++++++|+++|++|| |++|.|++++ .+++++|||||+|++.++|++|| .++ ..|+|++|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 9999999998 68999999999999999999999 666 89999999999
Q ss_pred ecCCCC
Q 011518 180 RAVPKE 185 (484)
Q Consensus 180 ~a~~k~ 185 (484)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 204
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=1.4e-16 Score=130.77 Aligned_cols=82 Identities=27% Similarity=0.489 Sum_probs=75.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+++ ++++++||||+|.++++|++|+ ++...|.+++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999999984 7889999999999999999999 789999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 877654
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-17 Score=142.22 Aligned_cols=82 Identities=16% Similarity=0.362 Sum_probs=76.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.+.++|||+|||+++||++|+++|++||+|+++.++.++.+++++|||||+|.++++|++|| ++.+.|.++.|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45689999999999999999999999999999888888789999999999999999999999 89999999999999987
Q ss_pred CCC
Q 011518 82 PRD 84 (484)
Q Consensus 82 ~~~ 84 (484)
+++
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 206
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=133.21 Aligned_cols=79 Identities=22% Similarity=0.459 Sum_probs=74.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhh--------heeecccccccccceeEEEEeChhhHHHhh--hhcccccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG 72 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~--------v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G 72 (484)
...++|||+|||+++|+++|+++|++||+|++ |+|++++.+++++|||||+|.++++|++|+ ++...|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999999999 999999989999999999999999999999 79999999
Q ss_pred ceeeecccC
Q 011518 73 RTVEAKKAV 81 (484)
Q Consensus 73 r~I~V~~a~ 81 (484)
++|.|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999998763
No 207
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-17 Score=142.41 Aligned_cols=84 Identities=15% Similarity=0.293 Sum_probs=75.3
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhh----hhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEV----LEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEA 77 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V----~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V 77 (484)
.+.++|||+|||+++||+||+++|++||+| ++|+|++++ ++++||||||+|.++++|++|| ++.+.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 467899999999999999999999999875 689999985 8999999999999999999999 8889999999999
Q ss_pred cccCCCCccc
Q 011518 78 KKAVPRDDQN 87 (484)
Q Consensus 78 ~~a~~~~~~~ 87 (484)
..+.+++...
T Consensus 100 ~~a~~~e~~~ 109 (123)
T 2dha_A 100 FRSTAAEVQQ 109 (123)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHH
Confidence 9887655443
No 208
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-17 Score=135.90 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=76.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|+++++|++||+ ++ +.|.+++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45689999999999999999999999999988 777888889999999999999999999999 76 8999999999999
Q ss_pred CCCCCCC
Q 011518 182 VPKELSP 188 (484)
Q Consensus 182 ~~k~~~~ 188 (484)
.++..++
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 8876543
No 209
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-16 Score=131.96 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=73.6
Q ss_pred ccccceEEeeeccCCchHHHH----HHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
.+.++|||+|||+++|+++|+ ++|++||+|++|+|++++.+ |+||||+|.++++|++|| ++...|++++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999999765 899999999999999999 889999999999
Q ss_pred ecccCCCCc
Q 011518 77 AKKAVPRDD 85 (484)
Q Consensus 77 V~~a~~~~~ 85 (484)
|.++.++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999976543
No 210
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=1e-16 Score=138.66 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCc---eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V 178 (484)
....++|||+|||+++|++||+++|++||. |+.|+|++|+. +++||||||+|+++++|++||++..+.|++|.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 355689999999999999999999999999 89999999987 99999999999999999999994338999999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987665
No 211
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=5.2e-17 Score=144.49 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=75.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhh---hhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE---VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~---V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~ 78 (484)
.+.++|||+|||+++||++|+++|++||+ |++|+|++|+. +++||||||+|.++++|++|| ++.+.|.+|.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45789999999999999999999999999 89999999986 999999999999999999999 89999999999999
Q ss_pred ccCCCC
Q 011518 79 KAVPRD 84 (484)
Q Consensus 79 ~a~~~~ 84 (484)
++.+++
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 886544
No 212
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=5e-17 Score=128.35 Aligned_cols=75 Identities=39% Similarity=0.717 Sum_probs=71.4
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeec
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
+|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|+++++|++|++.+.+.|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998668999999999875
No 213
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=5e-17 Score=133.07 Aligned_cols=81 Identities=33% Similarity=0.668 Sum_probs=72.7
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
++|||+|||.++++++|+++|++||.|++|.|++++.+++++|||||+|++++ |++|++.++ ..|+|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999888 8999999999999886
Q ss_pred CCC
Q 011518 185 ELS 187 (484)
Q Consensus 185 ~~~ 187 (484)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 214
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=6.4e-17 Score=137.37 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=75.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhh---hhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE---VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~---V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~ 78 (484)
.+.++|||+|||+++||++|+++|++||+ |+.|+|++++. ++++|||||+|.++++|++|| ++.+.|.+|.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 46789999999999999999999999888 89999999986 999999999999999999999 88899999999999
Q ss_pred ccCCCCc
Q 011518 79 KAVPRDD 85 (484)
Q Consensus 79 ~a~~~~~ 85 (484)
++.+++.
T Consensus 88 ~a~~~~~ 94 (107)
T 2lmi_A 88 EINNEDV 94 (107)
T ss_dssp ECCHHHH
T ss_pred ECCHHHH
Confidence 9876543
No 215
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=6.6e-17 Score=135.50 Aligned_cols=81 Identities=16% Similarity=0.420 Sum_probs=74.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccc-ccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDR-ATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~-~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++|| |++|+|++++ .+++++|||||+|.++++|++|| ++...|.++.|.|.++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4679999999999999999999999999 9999999998 68999999999999999999999 8899999999999998
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7653
No 216
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=132.82 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=75.4
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh--------c
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL--------N 172 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l--------~ 172 (484)
....++|||+|||+++++++|+++|++||.|+.|+|++++ +++++|||||+|.++++|++||+.++ +.| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 89999999999999999999999888 777 5
Q ss_pred CeEEEEeecCCC
Q 011518 173 GKMVEVKRAVPK 184 (484)
Q Consensus 173 Gr~I~V~~a~~k 184 (484)
+++|.|+++.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 217
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=5.3e-16 Score=132.00 Aligned_cols=76 Identities=22% Similarity=0.508 Sum_probs=69.5
Q ss_pred CccceEEecccccc-cchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 103 ARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 103 ~~~~~LfVgnLp~~-~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
...++|||+|||++ +++++|+++|++||.|++|.| +++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 47899999999999999999888 899999999999
Q ss_pred cCCCCC
Q 011518 181 AVPKEL 186 (484)
Q Consensus 181 a~~k~~ 186 (484)
++++..
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986543
No 218
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=129.42 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h--hhcCeEEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H--ELNGKMVEV 178 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~--~l~Gr~I~V 178 (484)
..+.++|||+|||+++|+++|+++|++||.|++|+|++ .||+|||+|+++++|++|++.++ . .|.||+|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35678999999999999999999999999999999974 36899999999999999999987 4 388999999
Q ss_pred eecCCCCC
Q 011518 179 KRAVPKEL 186 (484)
Q Consensus 179 ~~a~~k~~ 186 (484)
.++++++.
T Consensus 92 ~~S~~k~l 99 (100)
T 3r27_A 92 NYSTSQKI 99 (100)
T ss_dssp EECSCSCC
T ss_pred Eecccccc
Confidence 99988763
No 219
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=133.38 Aligned_cols=83 Identities=25% Similarity=0.578 Sum_probs=76.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||.++++++|+++|++||.|++|+|++++. +++|||||+|++.++|++|++.++ +.|+|++|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998863 489999999999999999999888 89999999999
Q ss_pred ecCCCC
Q 011518 180 RAVPKE 185 (484)
Q Consensus 180 ~a~~k~ 185 (484)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998764
No 220
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2.8e-16 Score=135.28 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=67.8
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeE-----E
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM-----V 176 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~-----I 176 (484)
...++|||+|||++++++||+++|++||+|++|.|+.| +||||+|+++++|++||+.++ ++|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999865 799999999999999999988 8999988 7
Q ss_pred EEeecCCCCCCCCCC
Q 011518 177 EVKRAVPKELSPGPS 191 (484)
Q Consensus 177 ~V~~a~~k~~~~~~~ 191 (484)
+|+.+.++...+...
T Consensus 87 ~v~~~~~~~~~~~r~ 101 (115)
T 3beg_B 87 RVKVDGPRSPSYGRS 101 (115)
T ss_dssp EEEECC----CCCCS
T ss_pred EeccCCCCCCCCCCC
Confidence 887777765544433
No 221
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=126.34 Aligned_cols=80 Identities=18% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+++ ||||+|+++++|++|++.++ +.|++++|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999743 99999999999999999888 89999999999
Q ss_pred ecCCCCCCC
Q 011518 180 RAVPKELSP 188 (484)
Q Consensus 180 ~a~~k~~~~ 188 (484)
+++++....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998876543
No 222
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=1.8e-16 Score=133.94 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=73.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++||++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 357899999999999999999999999999999999998 9999999999999999999999 7999999999999887
Q ss_pred C
Q 011518 81 V 81 (484)
Q Consensus 81 ~ 81 (484)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=6.8e-17 Score=141.85 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=75.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCcee--eEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIIT--DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~--~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V 178 (484)
.....++|||+|||+++||+||+++|++| .|+ +|+|++|+. +++||||||+|+++++|++||++++++|.+|.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 33556889999999999999999999999 676 899999987 99999999999999999999998668999999999
Q ss_pred eecCCCCC
Q 011518 179 KRAVPKEL 186 (484)
Q Consensus 179 ~~a~~k~~ 186 (484)
.++.+++.
T Consensus 116 ~~a~~~e~ 123 (126)
T 2hgm_A 116 FKSSQEEV 123 (126)
T ss_dssp EEECHHHH
T ss_pred EECCHHHh
Confidence 99876653
No 224
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=128.33 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=71.4
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc--CeEEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN--GKMVEV 178 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~--Gr~I~V 178 (484)
..+.++|||+|||+++++++|+++|++||.|++|+|+.+ ++||||+|+++++|++|++.++ +.|+ +++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 355689999999999999999999999999999998754 6799999999999999999888 8899 999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
++++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998865
No 225
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2e-17 Score=142.27 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=79.2
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceee--------EEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (484)
.+.++|||+|||+++++++|+++|++||.|+. |.|+.|+.+++++|||||+|+++++|++||+.++ ..|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 9999999899999999999999999999999888 89999
Q ss_pred eEEEEeecCCCCCC
Q 011518 174 KMVEVKRAVPKELS 187 (484)
Q Consensus 174 r~I~V~~a~~k~~~ 187 (484)
++|+|+++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887543
No 226
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=136.56 Aligned_cols=81 Identities=30% Similarity=0.520 Sum_probs=75.8
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ +.|.|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999998
Q ss_pred ec
Q 011518 180 RA 181 (484)
Q Consensus 180 ~a 181 (484)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 227
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=7.7e-17 Score=141.50 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=72.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhh--hheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVL--EAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~--~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~ 79 (484)
.+.++|||+|||+++||++|+++|++| .|+ +|+|++|+. +++||||||+|.++++|++|| +++..|.+|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 457899999999999999999999999 677 899999986 999999999999999999999 777899999999988
Q ss_pred cCCC
Q 011518 80 AVPR 83 (484)
Q Consensus 80 a~~~ 83 (484)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7644
No 228
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.63 E-value=3e-16 Score=141.85 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=77.4
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|++||+|++|.|++|+.+++++|||||+|.++++|++|| ++.+.|.+++|.|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4689999999999999999999999999999999999989999999999999999999999 78999999999999998
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7644
No 229
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.2e-16 Score=125.97 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=71.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
+...++|||+|||+++|+++|+++|++||.|++|+|+++ ||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999743 99999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
+.++..+.
T Consensus 78 a~~~~~~~ 85 (90)
T 2dnp_A 78 STKGQKKS 85 (90)
T ss_dssp SCCCCCCC
T ss_pred CCCCCCCC
Confidence 98875443
No 230
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=129.07 Aligned_cols=77 Identities=18% Similarity=0.409 Sum_probs=71.5
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
++|||+|||+++|+++|+++|++||.|++|.|+.+ +++||||+|+++++|++|++.++ ..|+|++|+|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 68899999999999999999887 8999999999999887
Q ss_pred CCC
Q 011518 185 ELS 187 (484)
Q Consensus 185 ~~~ 187 (484)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 231
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.6e-17 Score=140.45 Aligned_cols=83 Identities=14% Similarity=0.320 Sum_probs=76.3
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++|++||+++|++||.|+++.++.++.+++++|||||+|+++++|++||+ ++ +.|++++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999998788888889999999999999999999999 66 899999999999
Q ss_pred cCCCC
Q 011518 181 AVPKE 185 (484)
Q Consensus 181 a~~k~ 185 (484)
+.+++
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98764
No 232
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-16 Score=135.50 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=75.6
Q ss_pred ccccceEEeeeccCCchHHHH---HHHHhhhhhhhheeecccccc---cccceeEEEEeChhhHHHhh--hhccccccce
Q 011518 3 MELGKLFIGGISWDTNEDRLR---DYFQAFGEVLEAVIMKDRATG---RARGFGFIVFADPAVAERVV--MQKHMIDGRT 74 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~---e~Fs~~G~V~~v~I~~d~~tg---~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~ 74 (484)
.+.++|||+|||+++||++|+ ++|++||+|++|+|++++.++ +++|||||+|.++++|++|| ++.+.|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999987654 56699999999999999999 7999999999
Q ss_pred eeecccCCCCc
Q 011518 75 VEAKKAVPRDD 85 (484)
Q Consensus 75 I~V~~a~~~~~ 85 (484)
|.|.++.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999987753
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-16 Score=133.00 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=72.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|+.+ +++++||||+|.++++|++|| ++...|++++|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999765 458999999999999999999 7889999999999998
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87544
No 234
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=1e-16 Score=134.40 Aligned_cols=82 Identities=27% Similarity=0.614 Sum_probs=75.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|+.+.+.+.+++|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 467899999999999999999999999999999999998 9999999999999999999999877899999999998876
Q ss_pred CCc
Q 011518 83 RDD 85 (484)
Q Consensus 83 ~~~ 85 (484)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 544
No 235
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=130.34 Aligned_cols=81 Identities=19% Similarity=0.459 Sum_probs=73.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||.++++++|+++|++||.|+.|+|+.+ ++||||+|+++++|++||+.++ +.|+|++|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999866 6899999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98876543
No 236
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=9.6e-17 Score=143.27 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=73.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.+.++|||+|||+++||+||+++|++|| |++|+|++|+. +++||||||+|.++++|++|| ++.+.|.+|.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999999975 999999999999999999999 88899999999999887
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
+++.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 237
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=4e-16 Score=133.97 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=70.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
+...++|||+|||++++++||+++|++|| +|+.|.|+.+ +++|||||+|+++++|++||+.++ .+|+|++|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 8999988543 478999999999999999999988 89999999999
Q ss_pred ecCCCC
Q 011518 180 RAVPKE 185 (484)
Q Consensus 180 ~a~~k~ 185 (484)
++..+.
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 987543
No 238
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=133.54 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=75.7
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|++||+|+.|.+..+..++++++||||+|.++++|++|| ++...|.+++|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4689999999999999999999999999988877776668999999999999999999999 78999999999999998
Q ss_pred CCCcc
Q 011518 82 PRDDQ 86 (484)
Q Consensus 82 ~~~~~ 86 (484)
++...
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 239
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=5e-16 Score=135.03 Aligned_cols=82 Identities=22% Similarity=0.401 Sum_probs=76.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|+ ++...|.++.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999 7899999999999998
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 76543
No 240
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=2e-16 Score=152.63 Aligned_cols=79 Identities=22% Similarity=0.520 Sum_probs=73.9
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhh--hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G--~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.++|||+|||+++||++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++|| ++.+.|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 9999999999999999999999999999999999 788999999999998
Q ss_pred cCC
Q 011518 80 AVP 82 (484)
Q Consensus 80 a~~ 82 (484)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 241
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-16 Score=127.51 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|. +.|+.+ ++++||||+|+++++|++|++.++ ..|+|++|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999997 666654 578999999999999999999988 899999999999
Q ss_pred cCCCCC
Q 011518 181 AVPKEL 186 (484)
Q Consensus 181 a~~k~~ 186 (484)
+++++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988753
No 242
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=127.44 Aligned_cols=80 Identities=26% Similarity=0.507 Sum_probs=72.7
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
..+.++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|+++++|++|++.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356689999999999999999999999999999999744 6899999999999999999988 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9886543
No 243
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=126.64 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=71.1
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++++++|+++|++||.|++| +.++.+++ ||||+|.++++|++||+ ++ +.|+|++|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 66666554 99999999999999999 77 8999999999998
Q ss_pred CCCCCCCC
Q 011518 182 VPKELSPG 189 (484)
Q Consensus 182 ~~k~~~~~ 189 (484)
.++.....
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 87765443
No 244
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-16 Score=138.51 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=74.7
Q ss_pred CccceEEecccccccchhHHHHHhhhcCce----eeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGII----TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I----~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V 178 (484)
...++|||+|||+++|++||+++|++|+.| +.|.|++|+ ++++||||||+|+++++|++||+++.+.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 446899999999999999999999999975 689999984 799999999999999999999998558999999999
Q ss_pred eecCCCCC
Q 011518 179 KRAVPKEL 186 (484)
Q Consensus 179 ~~a~~k~~ 186 (484)
..+.+++.
T Consensus 100 ~~a~~~e~ 107 (123)
T 2dha_A 100 FRSTAAEV 107 (123)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99877653
No 245
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=125.41 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=70.1
Q ss_pred CccceEEecccccccchhHHHHHhhhc--CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQF--GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~--G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
...++|||+|||+++++++|+++|++| |.|++|+++ ++||||+|++.++|++||+.++ +.|++++|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 899988764 5699999999999999999888 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99887643
No 246
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-16 Score=137.39 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=73.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++...|.+++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46789999999999999999999999999999999999889999999999999999999999 7889999999999875
No 247
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.2e-16 Score=130.97 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccc-----cee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG-----RTV 75 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G-----r~I 75 (484)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||+|.++++|++|| ++.+.|.+ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999886 79999999999999999 78889999 999
Q ss_pred eecccCCCCcc
Q 011518 76 EAKKAVPRDDQ 86 (484)
Q Consensus 76 ~V~~a~~~~~~ 86 (484)
+|+++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
No 248
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-17 Score=140.01 Aligned_cols=85 Identities=22% Similarity=0.452 Sum_probs=79.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhh--------heeecccccccccceeEEEEeChhhHHHhh--hhccccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~--------v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~ 71 (484)
+.+.++|||+|||+++|+++|+++|++||+|+. |.|++++.+++++|||||+|.++++|++|| ++...|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 567899999999999999999999999999999 999999889999999999999999999999 7899999
Q ss_pred cceeeecccCCCCcc
Q 011518 72 GRTVEAKKAVPRDDQ 86 (484)
Q Consensus 72 Gr~I~V~~a~~~~~~ 86 (484)
+++|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 249
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.5e-16 Score=134.21 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=70.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hh--ccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~--~~~i~Gr~I~V~ 78 (484)
...++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ ++ ...|.+++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34789999999999999999999999999999999976 589999999999999999 34 357999999999
Q ss_pred ccCCCCccc
Q 011518 79 KAVPRDDQN 87 (484)
Q Consensus 79 ~a~~~~~~~ 87 (484)
++.+++...
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998766543
No 250
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.8e-16 Score=132.45 Aligned_cols=80 Identities=28% Similarity=0.610 Sum_probs=74.0
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++|||||+|.++++|++|+ +++..|.+++|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999999999999999999999999999999999985 358999999999999999999 789999999999999
Q ss_pred cCCC
Q 011518 80 AVPR 83 (484)
Q Consensus 80 a~~~ 83 (484)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 251
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-16 Score=133.49 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=71.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccc--------c
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI--------D 71 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i--------~ 71 (484)
+.+.++|||+|||+++|+++|+++|++||+|+.|+|++++ ++++++||||+|.++++|++|| ++...| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999998 8999999999999999999999 777777 4
Q ss_pred cceeeecccCC
Q 011518 72 GRTVEAKKAVP 82 (484)
Q Consensus 72 Gr~I~V~~a~~ 82 (484)
+++|.|+++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 56677766654
No 252
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=134.68 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCc---eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
....++|||+|||+++|++||+++|++||. |+.|+|++|+. ++++|||||+|+++++|++||+ ++ +.|.+|.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356789999999999999999999999998 89999999987 9999999999999999999999 55 899999999
Q ss_pred EeecCCCC
Q 011518 178 VKRAVPKE 185 (484)
Q Consensus 178 V~~a~~k~ 185 (484)
|.++.+++
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99988765
No 253
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.1e-15 Score=125.02 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=67.9
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
...|||+||++.+||++|+++|.+||+|++++|+. +||||||+|.++++|++|++.+| .+|.+|+|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999864 68999999999999999999998 89999999999984
No 254
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=125.69 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeE-EEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDV-VVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v-~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (484)
.....++|||+|||+++++++|+++|++||.|++| .|+.++.+++ |||+|.++++|++||+.++ +.|+|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557899999999999999999999999999999 5888876543 9999999999999999888 8999999999
Q ss_pred eecCCCCC
Q 011518 179 KRAVPKEL 186 (484)
Q Consensus 179 ~~a~~k~~ 186 (484)
+++.+++.
T Consensus 87 ~~a~~~~~ 94 (96)
T 2e44_A 87 AYIPDEMA 94 (96)
T ss_dssp EECCCCCS
T ss_pred EEcCcccc
Confidence 99998853
No 255
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=129.80 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=72.1
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+| +|+++ .++++++||||+|.++++|++|| ++.+.|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4578999999999999999999999999987 56666 57899999999999999999999 788999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987644
No 256
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.6e-16 Score=130.29 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhc--cccccceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQK--HMIDGRTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~--~~i~Gr~I~V~~ 79 (484)
..++|||+|||+++||++|+++|++||+|++|.|+++ |+||||+|.++++|++|+ ++. ..|.+++|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4689999999999999999999999999999998874 689999999999999999 443 459999999999
Q ss_pred cCCCCcc
Q 011518 80 AVPRDDQ 86 (484)
Q Consensus 80 a~~~~~~ 86 (484)
+.++...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9876554
No 257
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.7e-16 Score=130.73 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=69.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--h--hccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--M--QKHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~--~~~~i~Gr~I~V~ 78 (484)
...++|||+|||+++||++|+++|++||+|++|.|+++ |+||||+|.++++|++|+ + +...+.+++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999998875 689999999999999999 3 3467999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99876554
No 258
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=129.17 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCccceEEecccccc-cchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEE
Q 011518 102 PARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVE 177 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~-~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~ 177 (484)
..+.++|||+|||++ ++++||+++|++||.|++|.|++ .|+||||+|+++++|++|++.++ .+|+||+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999973 47899999999999999999876 359999999
Q ss_pred EeecCCCCCC
Q 011518 178 VKRAVPKELS 187 (484)
Q Consensus 178 V~~a~~k~~~ 187 (484)
|.++.++...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876543
No 259
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=125.01 Aligned_cols=80 Identities=25% Similarity=0.521 Sum_probs=69.5
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCc-eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh--hhhcCeEEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGI-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEV 178 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~-I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~I~V 178 (484)
....++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|+++++|++|++.++ ..|++++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 356789999999999999999999999999 5555552 47899999999999999999876 6899999999
Q ss_pred eecCCCCCCC
Q 011518 179 KRAVPKELSP 188 (484)
Q Consensus 179 ~~a~~k~~~~ 188 (484)
+++.++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9998876543
No 260
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=3.5e-16 Score=131.09 Aligned_cols=83 Identities=23% Similarity=0.570 Sum_probs=75.5
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
...++|||+|||+++++++|+++|++||.|++|.|+.|+ +++++|||||+|++.++|++|++ ..+.|+|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 456899999999999999999999999999999999998 89999999999999999999998 4479999999999998
Q ss_pred CCCCC
Q 011518 183 PKELS 187 (484)
Q Consensus 183 ~k~~~ 187 (484)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76543
No 261
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=131.17 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=71.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc---ccccceeEEEEeChhhHHHhhhhccccccceeeecc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t---g~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~ 79 (484)
.+.++|||+|||+++||++|+++|++||+|+ +.++.++.+ +++||||||+|.++++|++||...+.++++.+.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 5689999999999999999999999999999 888888777 799999999999999999999655678999998876
Q ss_pred cCCCC
Q 011518 80 AVPRD 84 (484)
Q Consensus 80 a~~~~ 84 (484)
+.+..
T Consensus 85 ~~~~~ 89 (114)
T 2dnl_A 85 SPTIK 89 (114)
T ss_dssp CSSSC
T ss_pred CCCcC
Confidence 65443
No 262
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-15 Score=127.56 Aligned_cols=76 Identities=22% Similarity=0.443 Sum_probs=70.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||.++++++|+++|++||.|++|+|+ ++++||||+|++.++|++|++.++ +.|+|++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 456899999999999999999999999999999997 357899999999999999999888 8999999999999
Q ss_pred CCC
Q 011518 182 VPK 184 (484)
Q Consensus 182 ~~k 184 (484)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 263
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=1.7e-15 Score=127.31 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=70.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++|| ++.+.|++++|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999874 49999999999999999 7899999999999999
Q ss_pred CCCCcccc
Q 011518 81 VPRDDQNI 88 (484)
Q Consensus 81 ~~~~~~~~ 88 (484)
.++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 87765443
No 264
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=128.68 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=73.8
Q ss_pred CccceEEeccccccc------chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCe-
Q 011518 103 ARTKKIFVGGLASTV------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK- 174 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~------teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr- 174 (484)
...++|||+|||+.+ |+++|+++|++||.|++|.|+ +.+++++|||||+|.+.++|++||+.++ +.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 4678999999999999999999999988 899998
Q ss_pred EEEEeecCCCC
Q 011518 175 MVEVKRAVPKE 185 (484)
Q Consensus 175 ~I~V~~a~~k~ 185 (484)
+|+|.++.+.+
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999997654
No 265
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=126.39 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=72.3
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|||+++++++|+++|++||.|..+ +.+++++|||||+|+++++|++|++.++ ..|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999988766 3457899999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.++...
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9887643
No 266
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=125.13 Aligned_cols=76 Identities=25% Similarity=0.576 Sum_probs=70.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||+|.++++|++|+ ++...|++++|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 568999999999999999999999999999999987 479999999999999999 7888999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 267
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.5e-16 Score=129.35 Aligned_cols=81 Identities=35% Similarity=0.562 Sum_probs=74.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++| .+|.|++++.++++++||||+|.++++|++|| ++.+.|.++.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 567999999999999999999999976 47889999889999999999999999999999 7999999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876543
No 268
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.9e-16 Score=130.91 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=68.3
Q ss_pred ccccceEEeeecc-CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhc--cccccceeee
Q 011518 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQK--HMIDGRTVEA 77 (484)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~--~~i~Gr~I~V 77 (484)
...++|||+|||+ ++||+||+++|++||+|++|+|++++ +||||+|.++++|++|| ++. ..|.+++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 99999999999999999999998764 79999999999999999 454 4599999999
Q ss_pred cccCCCCc
Q 011518 78 KKAVPRDD 85 (484)
Q Consensus 78 ~~a~~~~~ 85 (484)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99886543
No 269
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=129.45 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred cccceEEeeeccCC------chHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccc-e
Q 011518 4 ELGKLFIGGISWDT------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR-T 74 (484)
Q Consensus 4 d~r~LfVgnLP~~~------teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr-~ 74 (484)
..++|||+|||+++ |+++|+++|++||+|++|.|+ +.+++++|||||+|.++++|++|| ++...|.++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 36899999999999 789999999999999999998 368899999999999999999999 789999998 9
Q ss_pred eeecccCCCC
Q 011518 75 VEAKKAVPRD 84 (484)
Q Consensus 75 I~V~~a~~~~ 84 (484)
|.|.++...+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987543
No 270
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.7e-16 Score=125.59 Aligned_cols=79 Identities=30% Similarity=0.603 Sum_probs=70.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.++++|++|+...+.+.+++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 56799999999999999999999999999999999875 6899999999999999887556778999999999887
Q ss_pred CCcc
Q 011518 83 RDDQ 86 (484)
Q Consensus 83 ~~~~ 86 (484)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 271
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=132.44 Aligned_cols=82 Identities=12% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCccceEEecccccccchhHHH----HHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 102 PARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
..+.++|||+|||+.+++++|+ ++|++||.|++|.|.+ ++++||||||+|++.++|++|++.++ ..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988753 46789999999999999999999988 89999999
Q ss_pred EEeecCCCCC
Q 011518 177 EVKRAVPKEL 186 (484)
Q Consensus 177 ~V~~a~~k~~ 186 (484)
+|.+++++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 272
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=8.5e-16 Score=123.47 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=65.6
Q ss_pred ccceEEeeeccCC------chHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccc-ee
Q 011518 5 LGKLFIGGISWDT------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR-TV 75 (484)
Q Consensus 5 ~r~LfVgnLP~~~------teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr-~I 75 (484)
+++|||+|||+++ |+++|+++|++||+|++|.|+ +.+++++|||||+|.++++|++|+ ++...|.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999988 358899999999999999999999 788999999 88
Q ss_pred ee
Q 011518 76 EA 77 (484)
Q Consensus 76 ~V 77 (484)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 273
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=121.61 Aligned_cols=76 Identities=29% Similarity=0.490 Sum_probs=69.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHH-h-hhhcCeEEEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-F-HELNGKMVEV 178 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~-~-~~l~Gr~I~V 178 (484)
.....++|||+|||.++++++|+++|++||.|++|.|+++ ++||||+|+++++|++|++.+ + ..|+|++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 689999999999999999977 6 7999999999
Q ss_pred eecC
Q 011518 179 KRAV 182 (484)
Q Consensus 179 ~~a~ 182 (484)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 274
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-15 Score=125.98 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=69.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc--cceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID--GRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~--Gr~I~V~ 78 (484)
...++|||+|||+++||++|+++|++||+|++|+|+++ ++||||+|.++++|++|+ ++...|. +++|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 35689999999999999999999999999999998864 689999999999999999 7889999 9999999
Q ss_pred ccCCCC
Q 011518 79 KAVPRD 84 (484)
Q Consensus 79 ~a~~~~ 84 (484)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998754
No 275
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-15 Score=128.35 Aligned_cols=78 Identities=21% Similarity=0.463 Sum_probs=71.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ++||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999986 689999999999999999 7899999999999999
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 276
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=1.3e-15 Score=124.64 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=66.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
+..|||+||++.+||++|+++|.+||+|++++|+. +||||||+|.++++|++|+ ++...+.+|+|+|+.|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999876 5799999999999999999 89999999999999873
No 277
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=2.5e-15 Score=128.03 Aligned_cols=79 Identities=22% Similarity=0.455 Sum_probs=71.0
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+++++++|+++|++||.|++|.|+ +|||||+|++.++|++|++.++ ..|+|++|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999997 6799999999999999999888 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
+++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99886543
No 278
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=9.1e-16 Score=140.25 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=76.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|+.|.|++++.+++++|||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999989999999999999999999999 7899999999999998
Q ss_pred CCCCcc
Q 011518 81 VPRDDQ 86 (484)
Q Consensus 81 ~~~~~~ 86 (484)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 776543
No 279
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.6e-15 Score=125.88 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=69.7
Q ss_pred CCccceEEeccccc-ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 102 PARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 102 ~~~~~~LfVgnLp~-~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
..+.++|||+|||+ ++++++|+++|++||.|++|.|. ++||||+|++.++|++|++.++ ..|.+++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999998 99999999999999999999984 6799999999999999999988 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
++.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 280
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=124.15 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=69.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
...++|||+|||+++++++|+++|++||.|++|.|+++ +||||||+|+++++|++|+.. ...+++++|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999864 689999999999999876543 356799999999998
Q ss_pred CCCCCC
Q 011518 183 PKELSP 188 (484)
Q Consensus 183 ~k~~~~ 188 (484)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 281
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=1.6e-15 Score=130.15 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=68.7
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
..++|||+|||+++||++|+++|++|| +|+.|+|+.+ +++|||||+|.++++|++|| ++...|.+++|.|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999999999999999999 8999988653 37899999999999999999 8999999999999988
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 644
No 282
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=1.2e-15 Score=125.47 Aligned_cols=78 Identities=31% Similarity=0.566 Sum_probs=65.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (484)
....+|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.++++|+++....+.+.+++|.|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 45789999999999999999999999999999999885 7899999999999999765555667799999999887
Q ss_pred CCc
Q 011518 83 RDD 85 (484)
Q Consensus 83 ~~~ 85 (484)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 283
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=3e-15 Score=142.01 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=76.8
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++ ..+.++.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999988 7999999999988
Q ss_pred CCCC
Q 011518 182 VPKE 185 (484)
Q Consensus 182 ~~k~ 185 (484)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6653
No 284
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=1.8e-15 Score=125.26 Aligned_cols=82 Identities=18% Similarity=0.362 Sum_probs=74.0
Q ss_pred CCccceEEecccccccchhHHH----HHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 102 PARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
..+.++|||+|||+++++++|+ ++|++||.|++|.|+. ++++++||||+|.+.++|++|++.++ ..|.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 46788999999999999999999888 89999999
Q ss_pred EEeecCCCCC
Q 011518 177 EVKRAVPKEL 186 (484)
Q Consensus 177 ~V~~a~~k~~ 186 (484)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988653
No 285
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=129.70 Aligned_cols=80 Identities=24% Similarity=0.469 Sum_probs=70.9
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCC---CCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT---QRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~t---g~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (484)
...++|||+|||+++|+++|+++|++||.|+ +.++.++.+ +++||||||+|+++++|++||+.+ +.++|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4568999999999999999999999999999 888888877 699999999999999999999887 45889888887
Q ss_pred ecCCC
Q 011518 180 RAVPK 184 (484)
Q Consensus 180 ~a~~k 184 (484)
.+.+.
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 65443
No 286
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.8e-15 Score=126.53 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=68.5
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
+.++|||+|||+++|+++|+++|++||+|++|+|++ +++||||+|.+.++|++|+ ++...|.++.|.|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999983 5689999999999999999 78999999999999987
Q ss_pred CC
Q 011518 82 PR 83 (484)
Q Consensus 82 ~~ 83 (484)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 287
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=124.80 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=69.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|++||+|+ +.|+.+ ++++||||+|.++++|++|+ ++...|.+++|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999997 677654 57899999999999999999 78999999999999988
Q ss_pred CCC
Q 011518 82 PRD 84 (484)
Q Consensus 82 ~~~ 84 (484)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 288
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=120.86 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=70.5
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
....++|||+|| ++|+++|+++|++||.|++|.|. ++++||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346689999996 89999999999999999999984 468899999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011518 181 AVPKELSP 188 (484)
Q Consensus 181 a~~k~~~~ 188 (484)
+.++....
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 289
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=1.6e-15 Score=124.69 Aligned_cols=80 Identities=24% Similarity=0.434 Sum_probs=63.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeec
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
+....+|||+|||+++||++|+++|++||.|++|.|+++ +||||||+|+++++|+++... ...+++++|.|+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEc
Confidence 356789999999999999999999999999999999864 789999999999999854322 34677999999999
Q ss_pred CCCCCC
Q 011518 182 VPKELS 187 (484)
Q Consensus 182 ~~k~~~ 187 (484)
.++..+
T Consensus 82 ~~k~~~ 87 (89)
T 3d2w_A 82 EPKHNK 87 (89)
T ss_dssp C-----
T ss_pred CCCCcC
Confidence 887643
No 290
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=126.34 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=67.1
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcc--ccccceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH--MIDGRTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~--~i~Gr~I~V~~ 79 (484)
.+++|||+|||.++||++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++.. .|.+|+|.|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4789999999999999999999999999999999864 589999999999999999 5554 47899999999
Q ss_pred cCCCC
Q 011518 80 AVPRD 84 (484)
Q Consensus 80 a~~~~ 84 (484)
+++++
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 87654
No 291
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=3.4e-15 Score=127.78 Aligned_cols=83 Identities=13% Similarity=0.264 Sum_probs=74.9
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
+...++|||+|||+++++++|+++|++||.|+.|.|+.+. +++|||||+|.+.++|++|++.++ ..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999764 458999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.++...
T Consensus 82 a~~~~~~ 88 (115)
T 3lqv_A 82 YNANRAF 88 (115)
T ss_dssp CCHHHHT
T ss_pred ecCChhh
Confidence 9875543
No 292
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-15 Score=126.29 Aligned_cols=77 Identities=27% Similarity=0.541 Sum_probs=70.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++.+.|.+++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999999865 589999999999999999 7899999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87654
No 293
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=3.3e-15 Score=138.37 Aligned_cols=87 Identities=45% Similarity=0.785 Sum_probs=78.0
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEee
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (484)
.+...++|||+|||+++|+++|+++|++||.|++|.|++++.+++++|||||+|.++++|++||+.+.+.|.++.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999865899999999999
Q ss_pred cCCCCCC
Q 011518 181 AVPKELS 187 (484)
Q Consensus 181 a~~k~~~ 187 (484)
+.++...
T Consensus 89 ~~~~~~~ 95 (196)
T 1l3k_A 89 AVSREDS 95 (196)
T ss_dssp CCC----
T ss_pred ccCcccc
Confidence 8776543
No 294
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=123.43 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=70.6
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhh-eeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEA-VIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v-~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
..++|||+|||+++|+++|+++|++||+|++| .|++++.+++ |||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 5888876554 999999999999999 8999999999999999
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.+++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8764
No 295
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=3.1e-15 Score=138.74 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=78.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||+|||+.+++++|+++|++||.|+.|.|+.++ +++++|||||+|+++++|++||+.++ ..|++++|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred ecCCCCC
Q 011518 180 RAVPKEL 186 (484)
Q Consensus 180 ~a~~k~~ 186 (484)
++.+...
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9977654
No 296
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=124.14 Aligned_cols=78 Identities=23% Similarity=0.487 Sum_probs=69.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
...++|||+|||+++||++|+++|++||+|++| +.++.+++ ||||+|.++++|++|| ++.+.|+++.|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 467899999999999999999999999999986 55555655 9999999999999999 88999999999999887
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6544
No 297
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=123.49 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=67.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhh-hhhheeecccccccccceeEEEEeChhhHHHhh--hhc-cccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGE-VLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQK-HMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~-V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~-~~i~Gr~I~V~ 78 (484)
.+.++|||+|||+++||++|+++|++||+ |..+.|+ +++||||+|.++++|++|+ ++. ..|.+++|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 56789999999999999999999999999 5555552 4689999999999999999 787 89999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
++.++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 298
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=122.82 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.9
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++|+ ++.+.|.+++|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356899999999999999999999999999999999854 9999999999999999 799999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987654
No 299
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-15 Score=122.63 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=66.1
Q ss_pred ceEEeccccccc------chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCe-EEE
Q 011518 106 KKIFVGGLASTV------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK-MVE 177 (484)
Q Consensus 106 ~~LfVgnLp~~~------teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-~I~ 177 (484)
++|||+|||..+ ++++|+++|++||.|++|.|+ +.+++++|||||+|+++++|++|++.++ ..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 4678999999999999999999999888 899999 887
Q ss_pred Ee
Q 011518 178 VK 179 (484)
Q Consensus 178 V~ 179 (484)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 300
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-15 Score=125.10 Aligned_cols=79 Identities=25% Similarity=0.378 Sum_probs=70.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|..+ +.+++++|||||+|.++++|++|+ ++...|.+++|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999987655 357889999999999999999999 788999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 877543
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.56 E-value=8.2e-15 Score=122.19 Aligned_cols=77 Identities=22% Similarity=0.460 Sum_probs=69.6
Q ss_pred CCCccceEEeccccc-ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEE
Q 011518 101 GPARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~-~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (484)
.....++|||+|||+ ++++++|+++|++||.|++|.|. +|||||+|++.++|++|++.++ ..|+|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999883 6899999999999999999888 7899999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
++++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9997653
No 302
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=1.4e-15 Score=143.03 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=74.4
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~ 183 (484)
..++|||+|||+++|+++|+++|++||.|+.|.|++++. ++++|||||+|+++++|++||+.+++.|+|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 458999999999999999999999999999999999864 8899999999999999999999888899999999998766
Q ss_pred CC
Q 011518 184 KE 185 (484)
Q Consensus 184 k~ 185 (484)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 303
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=121.60 Aligned_cols=76 Identities=21% Similarity=0.432 Sum_probs=69.6
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
..+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++|+ ++...|.+++|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999999854 9999999999999999 789999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 304
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=2.1e-15 Score=124.90 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=73.8
Q ss_pred ccccceEEeeeccCCchHHHH----HHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
...++|||+|||+++|+++|+ ++|++||+|++|.|++ ++++++||||+|.++++|++|+ ++...+.+++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999999874 5788999999999999999999 789999999999
Q ss_pred ecccCCCCcc
Q 011518 77 AKKAVPRDDQ 86 (484)
Q Consensus 77 V~~a~~~~~~ 86 (484)
|.++.++...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999876543
No 305
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=119.95 Aligned_cols=74 Identities=27% Similarity=0.493 Sum_probs=67.8
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--h-hccccccceeeec
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--M-QKHMIDGRTVEAK 78 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~-~~~~i~Gr~I~V~ 78 (484)
+...++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ + +...+.+++|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999874 589999999999999999 5 8889999999998
Q ss_pred ccC
Q 011518 79 KAV 81 (484)
Q Consensus 79 ~a~ 81 (484)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 306
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=3.9e-15 Score=138.07 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=75.2
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|++||+|++|.|+.++ +++++|||||+|.++++|++|| ++...|++++|.|.++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35799999999999999999999999999999999998 8999999999999999999999 78999999999999987
Q ss_pred CCC
Q 011518 82 PRD 84 (484)
Q Consensus 82 ~~~ 84 (484)
+..
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 644
No 307
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=4.1e-15 Score=134.20 Aligned_cols=81 Identities=33% Similarity=0.719 Sum_probs=76.4
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
..++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 3578999999999999999999999999999999999889999999999999999999999 888999999999999987
Q ss_pred CC
Q 011518 83 RD 84 (484)
Q Consensus 83 ~~ 84 (484)
++
T Consensus 166 k~ 167 (167)
T 2cjk_A 166 RH 167 (167)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 308
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-15 Score=129.16 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=68.5
Q ss_pred ccccceEEeeeccC-CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hh--ccccccceeee
Q 011518 3 MELGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEA 77 (484)
Q Consensus 3 ~d~r~LfVgnLP~~-~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~--~~~i~Gr~I~V 77 (484)
...++|||+|||++ +||++|+++|++||+|++|+|++ .|+||||+|.++++|++|+ ++ ...|.+|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34789999999998 99999999999999999999975 3689999999999999999 44 35699999999
Q ss_pred cccCCCCcc
Q 011518 78 KKAVPRDDQ 86 (484)
Q Consensus 78 ~~a~~~~~~ 86 (484)
.++..+...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 998766543
No 309
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=9.3e-15 Score=131.82 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=78.4
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
+.++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|.++++|++|++.++ ..|.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999999899999999999999999999999887 89999999999998
Q ss_pred CCCCC
Q 011518 183 PKELS 187 (484)
Q Consensus 183 ~k~~~ 187 (484)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 310
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=130.41 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=72.0
Q ss_pred cccceEEeeeccCCchHHHH----HHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeee
Q 011518 4 ELGKLFIGGISWDTNEDRLR----DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~----e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V 77 (484)
..++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.++++|++|+ ++...|.+++|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46799999999999999876 6999999999988754 5788999999999999999999 8999999999999
Q ss_pred cccCCCCccc
Q 011518 78 KKAVPRDDQN 87 (484)
Q Consensus 78 ~~a~~~~~~~ 87 (484)
.++..+....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9998765543
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-15 Score=127.72 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=69.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+++.++|||+|||+++|+++|+++|++||+|++|.|++ +++||||+|.++++|++|| ++...|.++.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999875 4689999999999999999 889999999999999
Q ss_pred cCCC
Q 011518 80 AVPR 83 (484)
Q Consensus 80 a~~~ 83 (484)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8654
No 312
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.54 E-value=1.1e-14 Score=130.86 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=77.3
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
.++|||+|||+++++++|+++|++||.|.+|.|++++.+++++|||||+|.++++|++|++.++ ..+.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999999899999999999999999999999887 899999999999987
Q ss_pred CCC
Q 011518 184 KEL 186 (484)
Q Consensus 184 k~~ 186 (484)
+..
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 313
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=9e-15 Score=119.41 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=68.8
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+|||++++++||+++|++| .|++|+|. +++|||||+|+++++|++|++.++ .+|+|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 578999999999999999999888 89999999999986
Q ss_pred CCC
Q 011518 183 PKE 185 (484)
Q Consensus 183 ~k~ 185 (484)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 314
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=4.6e-15 Score=126.33 Aligned_cols=76 Identities=22% Similarity=0.452 Sum_probs=69.8
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.+.++|||+|||+++|+++|+++|++||+|++|.|+ +|||||+|.+.++|++|+ ++...|.++.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999999999988 589999999999999999 789999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 887543
No 315
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=5.6e-15 Score=127.10 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=63.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccce-----e
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRT-----V 75 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~-----I 75 (484)
...++|||+|||+++||++|+++|++||+|++|.|+++ +||||+|.++++|++|| ++...|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999876 89999999999999999 8899999998 5
Q ss_pred eecccCC
Q 011518 76 EAKKAVP 82 (484)
Q Consensus 76 ~V~~a~~ 82 (484)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5554444
No 316
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=2e-14 Score=131.28 Aligned_cols=83 Identities=14% Similarity=0.236 Sum_probs=73.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcC--eEEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG--KMVE 177 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G--r~I~ 177 (484)
.+.+..+|||+||++.+|+++|+++|++||+|++|+|+.+ ++++||||+|+++++|++|++.++ .+|.+ ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 4456788999999999999999999999999999998644 257899999999999999999998 88865 9999
Q ss_pred EeecCCCCCC
Q 011518 178 VKRAVPKELS 187 (484)
Q Consensus 178 V~~a~~k~~~ 187 (484)
|.+++++...
T Consensus 118 V~~Ak~~~l~ 127 (164)
T 1sjr_A 118 IDFSKLTSLN 127 (164)
T ss_dssp EEECSSSSCC
T ss_pred EEEecCCccc
Confidence 9999987543
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=5.1e-15 Score=131.78 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=72.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhhe--eecc---cccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV--IMKD---RATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~--I~~d---~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
..++|||+|||+++|+++|+++|++||+|+.|. ++.+ +.+++++|||||+|.++++|++|| ++...|.++.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 568999999999999999999999999999872 2333 457899999999999999999999 889999999999
Q ss_pred ecccCCCCc
Q 011518 77 AKKAVPRDD 85 (484)
Q Consensus 77 V~~a~~~~~ 85 (484)
|.++.+...
T Consensus 124 V~~a~~~~~ 132 (143)
T 3egn_A 124 VQFARSARP 132 (143)
T ss_dssp EEECCCSCC
T ss_pred EEECCCCCC
Confidence 999976544
No 318
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=9.8e-15 Score=124.83 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=70.1
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+|||+.+++++|+++|++||.|++|.|++ .++||||+|++.++|++||+.++ ..|++++|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998863 56799999999999999999988 89999999999987
Q ss_pred CCCC
Q 011518 183 PKEL 186 (484)
Q Consensus 183 ~k~~ 186 (484)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 319
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=3.5e-15 Score=132.86 Aligned_cols=86 Identities=26% Similarity=0.281 Sum_probs=72.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEE--E---EeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV--V---MYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~--i---~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
.+.++|||+|||+++|+++|+++|++||.|+.|. + ++.+.+++++|||||+|.+.++|++||+.++ ..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999987741 1 1112468899999999999999999999888 89999999
Q ss_pred EEeecCCCCCCC
Q 011518 177 EVKRAVPKELSP 188 (484)
Q Consensus 177 ~V~~a~~k~~~~ 188 (484)
.|.+++++..+.
T Consensus 123 ~V~~a~~~~~~~ 134 (143)
T 3egn_A 123 VVQFARSARPKQ 134 (143)
T ss_dssp EEEECCCSCC--
T ss_pred EEEECCCCCCcc
Confidence 999998765443
No 320
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=121.34 Aligned_cols=75 Identities=21% Similarity=0.430 Sum_probs=67.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhh--hhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAF--GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~--G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
...++|||+|||+++|+++|+++|++| |+|+.|+++ ++||||+|.++++|++|| ++...|.+++|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 888887764 469999999999999999 88999999999999
Q ss_pred ccCCCCc
Q 011518 79 KAVPRDD 85 (484)
Q Consensus 79 ~a~~~~~ 85 (484)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 321
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=7.1e-15 Score=120.04 Aligned_cols=75 Identities=9% Similarity=0.244 Sum_probs=68.6
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++||++|+++|++| +|++|+|. ++||||||+|.++++|++|+ ++...+.+++|.|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 57899999999999999999 8899999999999998
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=8.2e-15 Score=124.60 Aligned_cols=73 Identities=18% Similarity=0.429 Sum_probs=67.2
Q ss_pred ccceEEeeeccC-CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 5 LGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 5 ~r~LfVgnLP~~-~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
.++|||+|||++ +||++|+++|++||+|++|.| +++||||+|.++++|++|| ++...|++++|.|.++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 489999999999 999999999999999999998 4689999999999999999 78999999999999987
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
+...
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 323
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=9.6e-15 Score=131.06 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=71.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ++|||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35689999999999999999999999999999999987 5799999999999999999 7899999999999998
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 324
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.6e-15 Score=122.22 Aligned_cols=75 Identities=21% Similarity=0.457 Sum_probs=68.2
Q ss_pred ccccceEEeeecc-CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
.+.++|||+|||+ ++|+++|+++|++||+|++|.|. ++||||+|.++++|++|+ ++...+.+++|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999998 99999999999999999999984 589999999999999999 788999999999999
Q ss_pred cCCCCc
Q 011518 80 AVPRDD 85 (484)
Q Consensus 80 a~~~~~ 85 (484)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876544
No 325
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=1.2e-14 Score=117.72 Aligned_cols=72 Identities=22% Similarity=0.518 Sum_probs=65.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhh----h-------hhhhheeecccccccccceeEEEEeChhhHHHhh-hhccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAF----G-------EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHM 69 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~----G-------~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~ 69 (484)
+.+.++|||+|||+++|+++|+++|++| | +|.+++++++ |+||||+|.++++|++|+ ++...
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3578999999999999999999999999 7 7888887764 689999999999999999 88999
Q ss_pred cccceeeecc
Q 011518 70 IDGRTVEAKK 79 (484)
Q Consensus 70 i~Gr~I~V~~ 79 (484)
+.+++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999875
No 326
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=1.5e-14 Score=136.09 Aligned_cols=82 Identities=24% Similarity=0.564 Sum_probs=77.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||.++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++...|.++.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999999999889999999999999999999999 79999999999999988
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7643
No 327
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=2.6e-14 Score=124.33 Aligned_cols=79 Identities=23% Similarity=0.417 Sum_probs=70.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.+...++|||+|| ++++++|+++|++||.|++|.|. ++++||||+|++.++|++||+.++ ..|++++|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 468899999999999999999888 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
++.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99887543
No 328
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=1.7e-14 Score=120.21 Aligned_cols=73 Identities=22% Similarity=0.470 Sum_probs=67.5
Q ss_pred ccccceEEeeecc-CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
.+.++|||+|||+ ++|+++|+++|++||+|++|.|. +|||||+|.++++|++|+ ++...+.+++|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5689999999998 99999999999999999999884 689999999999999999 788899999999998
Q ss_pred cCCC
Q 011518 80 AVPR 83 (484)
Q Consensus 80 a~~~ 83 (484)
+.++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=122.91 Aligned_cols=77 Identities=14% Similarity=0.307 Sum_probs=67.9
Q ss_pred CccceEEe--cccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh-----cCe
Q 011518 103 ARTKKIFV--GGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL-----NGK 174 (484)
Q Consensus 103 ~~~~~LfV--gnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l-----~Gr 174 (484)
.++++||| +||++++++++|+++|++||.|++|.|+. .||||||+|+++++|++|++.|+ ++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 77999999999999999999999998863 37899999999999999999988 777 689
Q ss_pred EEEEeecCCCC
Q 011518 175 MVEVKRAVPKE 185 (484)
Q Consensus 175 ~I~V~~a~~k~ 185 (484)
+|.|.++...+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999987544
No 330
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.6e-14 Score=129.59 Aligned_cols=79 Identities=29% Similarity=0.553 Sum_probs=75.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||.++|+++|+++|++||+|+++.|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999 7899999999999987
Q ss_pred C
Q 011518 81 V 81 (484)
Q Consensus 81 ~ 81 (484)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=5.8e-14 Score=123.58 Aligned_cols=82 Identities=16% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccce-eeeeeccHHHHHHHHHHHh-hhhcC--eEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVLLKTF-HELNG--KMV 176 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~-aFV~F~s~e~A~~Al~~~~-~~l~G--r~I 176 (484)
.+.+..+|||+||++.+|+++|+++|++||.|++|+|+.+ .++| |||+|++.++|++|++.++ .+|.+ +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3456678999999999999999999999999999988754 3678 9999999999999999999 88988 899
Q ss_pred EEeecCCCCCC
Q 011518 177 EVKRAVPKELS 187 (484)
Q Consensus 177 ~V~~a~~k~~~ 187 (484)
+|.+++++...
T Consensus 99 rI~~ak~~~l~ 109 (130)
T 3zzy_A 99 RIDFSKLTSLN 109 (130)
T ss_dssp EEEECSCSSCC
T ss_pred EEEecCCCcee
Confidence 99999887543
No 332
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=120.83 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=70.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccce-eeeeeccHHHHHHHHHHHh-hhhcC--eEE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVLLKTF-HELNG--KMV 176 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~-aFV~F~s~e~A~~Al~~~~-~~l~G--r~I 176 (484)
.+....+|||+||++.+|+++|+++|++||.|++|+|+. + +|| |||+|++.++|++|++.++ .+|.+ +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 345566789999999999999999999999999999864 2 276 9999999999999999998 88987 699
Q ss_pred EEeecCCCCC
Q 011518 177 EVKRAVPKEL 186 (484)
Q Consensus 177 ~V~~a~~k~~ 186 (484)
+|.+|+++..
T Consensus 95 ~V~~Ak~~~l 104 (124)
T 2e5i_A 95 KIEYARPTRL 104 (124)
T ss_dssp EEECCSCSCC
T ss_pred EEEEecCCcc
Confidence 9999988764
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=4.1e-14 Score=129.19 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=69.0
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccc--ceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG--RTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G--r~I~V~~a 80 (484)
..+|||+|||+++||++|+++|++||+|++|+|+.++ .++||||+|.++++|++|+ +++..|.+ ++|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4578999999999999999999999999999987542 5789999999999999999 89999966 99999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 88654
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.2e-14 Score=125.12 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=69.1
Q ss_pred ceEEeccc----ccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc----H-HH---HHHHHH--HHh-hh
Q 011518 106 KKIFVGGL----ASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS----E-EA---VDKVLL--KTF-HE 170 (484)
Q Consensus 106 ~~LfVgnL----p~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s----~-e~---A~~Al~--~~~-~~ 170 (484)
++|||+|| |+.+++++|+++|++||+|.+|.++.|++|++++|||||+|.+ + ++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 3 32 788887 556 79
Q ss_pred hcCeEEEEeecCC
Q 011518 171 LNGKMVEVKRAVP 183 (484)
Q Consensus 171 l~Gr~I~V~~a~~ 183 (484)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998643
No 335
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=2.6e-14 Score=132.51 Aligned_cols=83 Identities=24% Similarity=0.485 Sum_probs=77.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999 7899999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 336
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2e-14 Score=125.40 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred cceEEeee----ccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC----hhh----HHHhh----hhccc
Q 011518 6 GKLFIGGI----SWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD----PAV----AERVV----MQKHM 69 (484)
Q Consensus 6 r~LfVgnL----P~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~----~e~----A~~Al----~~~~~ 69 (484)
++|||+|| |++++|++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|+ ++...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 77776 38889
Q ss_pred cccceeeecccC
Q 011518 70 IDGRTVEAKKAV 81 (484)
Q Consensus 70 i~Gr~I~V~~a~ 81 (484)
|++++|+|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.48 E-value=4.2e-14 Score=114.50 Aligned_cols=71 Identities=18% Similarity=0.469 Sum_probs=64.6
Q ss_pred CccceEEecccccccchhHHHHHhhhc----C-------ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hh
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQF----G-------IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE 170 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~----G-------~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~ 170 (484)
.+.++|||+|||+++++++|+++|++| | .|.+|.++++ ++||||+|+++++|++|+ .++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999988754 689999999999999999 777 89
Q ss_pred hcCeEEEEee
Q 011518 171 LNGKMVEVKR 180 (484)
Q Consensus 171 l~Gr~I~V~~ 180 (484)
|+|++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 338
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=117.08 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=67.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|| ++|+++|+++|++||+|++|.|. ++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999996 99999999999999999999985 46789999999999999999 7899999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 339
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=2.9e-14 Score=129.20 Aligned_cols=76 Identities=26% Similarity=0.558 Sum_probs=73.2
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.++|||+|||+++|+++|+++|++||+|+.|.|++++.+++++|||||+|.++++|++|+ ++...+.+++|.|.+|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 589999999999999999999999999999999999889999999999999999999999 7999999999999886
No 340
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=2.8e-14 Score=150.15 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=77.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||++||+++|+++|++||+|+.|.|+.++.+++++|||||+|.++++|++|| ++.+.|.+++|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 3479999999999999999999999999999999999989999999999999999999999 79999999999999998
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 341
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.46 E-value=8.7e-14 Score=126.08 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=73.6
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCC--CccceeeeeeccHHHHHHHHHHHh-hhhc---CeEEE
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQ--RPRGFGFITYDSEEAVDKVLLKTF-HELN---GKMVE 177 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg--~~rG~aFV~F~s~e~A~~Al~~~~-~~l~---Gr~I~ 177 (484)
..++|||+|||+++|+++|+++|++||.|++|+|++++.++ +++|||||+|.++++|++|++.++ ..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45899999999999999999999999999999999999876 899999999999999999999887 5554 67888
Q ss_pred EeecCCCCC
Q 011518 178 VKRAVPKEL 186 (484)
Q Consensus 178 V~~a~~k~~ 186 (484)
|.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 887766543
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=1.5e-13 Score=116.60 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=71.7
Q ss_pred CccceEEeccccc-----ccchhHHHHHhhhcCceeeEEEEeeCCC-CCccceeeeeeccHHHHHHHHHHHh-hhhcCeE
Q 011518 103 ARTKKIFVGGLAS-----TVTESDFKKYFDQFGIITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (484)
Q Consensus 103 ~~~~~LfVgnLp~-----~~teedL~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (484)
.++++|+|.||.. +.+++||+++|++||.|++|.|++++.+ ++++||+||+|+++++|++|++.++ ..|.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568899999963 2378999999999999999999998764 5889999999999999999999999 8999999
Q ss_pred EEEeecCC
Q 011518 176 VEVKRAVP 183 (484)
Q Consensus 176 I~V~~a~~ 183 (484)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.4e-14 Score=120.59 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=65.5
Q ss_pred ccccceEE--eeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccc-----ccc
Q 011518 3 MELGKLFI--GGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI-----DGR 73 (484)
Q Consensus 3 ~d~r~LfV--gnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i-----~Gr 73 (484)
..+++||| +|||+++||++|+++|++||+|++|+|+.+ |+||||+|.++++|++|+ ++.+.+ .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 669999999999999999999999988753 689999999999999999 787776 577
Q ss_pred eeeecccCCCCc
Q 011518 74 TVEAKKAVPRDD 85 (484)
Q Consensus 74 ~I~V~~a~~~~~ 85 (484)
+|.|..+...++
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 888877765443
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=3.7e-14 Score=133.25 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=72.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
+.++|||+|||+++|+++|+++|++||+|+.|.|++++ +++++|||||+|.++++|++|| +..+.+.+++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999986 5899999999999999999999 556789999999998765
Q ss_pred C
Q 011518 83 R 83 (484)
Q Consensus 83 ~ 83 (484)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=113.38 Aligned_cols=74 Identities=9% Similarity=0.188 Sum_probs=64.9
Q ss_pred ccce-EEecccccccchhH----HHHHhhhc-CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 104 RTKK-IFVGGLASTVTESD----FKKYFDQF-GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 104 ~~~~-LfVgnLp~~~teed----L~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
+..+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|++.++|++|++.|+ .+|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599988 22 899999999999999999998 89999999
Q ss_pred EEeecCCCCCC
Q 011518 177 EVKRAVPKELS 187 (484)
Q Consensus 177 ~V~~a~~k~~~ 187 (484)
+|.+|+.+..-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999887653
No 346
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=1.8e-13 Score=129.57 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred ccceEEecccc-cccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 104 RTKKIFVGGLA-STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 104 ~~~~LfVgnLp-~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
+.++|||+||| +.+++++|+++|++||.|++|+|+++ .||||||+|+++++|++||+.++ +.|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 89999999999999999999999865 37899999999999999999988 8999999999998
Q ss_pred CCCCC
Q 011518 182 VPKEL 186 (484)
Q Consensus 182 ~~k~~ 186 (484)
+.+..
T Consensus 78 ~~~~~ 82 (205)
T 3tyt_A 78 KQPAI 82 (205)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 76543
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=1.4e-13 Score=121.19 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=67.7
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccce-eEEEEeChhhHHHhh--hhcccccc--ceeeeccc
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGF-GFIVFADPAVAERVV--MQKHMIDG--RTVEAKKA 80 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~-aFVeF~~~e~A~~Al--~~~~~i~G--r~I~V~~a 80 (484)
-+|||+||++++||++|+++|++||+|++|+|+++ .++| |||+|.++++|++|+ ++...|.+ ++|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999988764 3678 999999999999999 89999988 89999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87654
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=3.4e-13 Score=117.88 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=65.8
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccce-eEEEEeChhhHHHhh--hhcccccc--ceeeeccc
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGF-GFIVFADPAVAERVV--MQKHMIDG--RTVEAKKA 80 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~-aFVeF~~~e~A~~Al--~~~~~i~G--r~I~V~~a 80 (484)
.+|||+|||+++|+++|+++|++||+|++|+|++ + +|| |||+|.+.++|++|+ ++...|.+ ++|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3578999999999999999999999999999965 2 286 999999999999999 89999987 68999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87754
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=4.2e-13 Score=130.00 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=69.2
Q ss_pred CCccceEEeccccccc---------chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh
Q 011518 102 PARTKKIFVGGLASTV---------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~---------teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l 171 (484)
....++|||+||+..+ +|++|+++|++||+|++|+|+. +||||||+|.++++|++|++.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 8999999999999999999985 37899999999999999999998 777
Q ss_pred ------------cCeEEEEeecCCCCC
Q 011518 172 ------------NGKMVEVKRAVPKEL 186 (484)
Q Consensus 172 ------------~Gr~I~V~~a~~k~~ 186 (484)
.++.|.|++|.+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987643
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=2.5e-13 Score=117.99 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=67.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|| ++|+++|+++|++||+|++|.|. ++++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35789999995 79999999999999999999986 46799999999999999999 7899999999999999
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
.++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87644
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-12 Score=111.92 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCccceEEeccccccc-----------chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-
Q 011518 101 GPARTKKIFVGGLASTV-----------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF- 168 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~-----------teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~- 168 (484)
.+.+.++|+|.||.... ++++|+++|++||.|++|.| .|+ .++|||||+|.++++|++|++.++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 34567899999994332 36899999999999999966 554 379999999999999999999988
Q ss_pred hhhcCeEEEEeecCCCCCC
Q 011518 169 HELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 169 ~~l~Gr~I~V~~a~~k~~~ 187 (484)
+.|++++|+|.++.++...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 8999999999999886543
No 352
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=5e-13 Score=131.40 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=74.7
Q ss_pred CCCccceEEecccccccchhHHH----HHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeE
Q 011518 101 GPARTKKIFVGGLASTVTESDFK----KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (484)
...+.++|||+|||+++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.++ ..|.+++
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567999999999999999977 8999999999999886 47789999999999999999999888 8999999
Q ss_pred EEEeecCCCCC
Q 011518 176 VEVKRAVPKEL 186 (484)
Q Consensus 176 I~V~~a~~k~~ 186 (484)
|+|.+++.+..
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 353
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.39 E-value=1.6e-13 Score=125.02 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.+...++|||+|||.++|+++|+++|++|+.|.. .++.+..+++++|||||+|.++++|++||+ ++ ..|.+++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4466799999999999999999999999998877 445566678899999999999999999996 55 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
++.++...
T Consensus 87 ~~~~~~~~ 94 (175)
T 1fje_B 87 KPKGRDSK 94 (175)
T ss_dssp CCCCSSCS
T ss_pred cCCCcccc
Confidence 99876543
No 354
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.6e-13 Score=110.68 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=63.8
Q ss_pred ccc-eEEeeeccCCchHH----HHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 5 LGK-LFIGGISWDTNEDR----LRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 5 ~r~-LfVgnLP~~~teee----L~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
+.+ |||+|||+++++++ |+++|++|| +|.+| ++ |+|||+|.+.++|++|+ ++...+.+|+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999998 458999995 99888 22 99999999999999999 899999999999
Q ss_pred ecccCCCCccc
Q 011518 77 AKKAVPRDDQN 87 (484)
Q Consensus 77 V~~a~~~~~~~ 87 (484)
|..|+.+.+..
T Consensus 78 v~~A~~~sd~~ 88 (96)
T 2diu_A 78 VSFTPKNRELC 88 (96)
T ss_dssp EESSCCSCCCC
T ss_pred EEecCCCccee
Confidence 99998776543
No 355
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=5.7e-13 Score=127.67 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=72.6
Q ss_pred CccceEEeccccc-ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 103 ARTKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 103 ~~~~~LfVgnLp~-~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
.+.++|||+|||+ ++++++|+++|++||.|++|+|++++ ++||||+|.++++|++|++.++ ..|.+++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678999999999 99999999999999999999999874 7899999999999999999887 899999999999
Q ss_pred cCCCCC
Q 011518 181 AVPKEL 186 (484)
Q Consensus 181 a~~k~~ 186 (484)
+.++..
T Consensus 107 a~~~~~ 112 (229)
T 2adc_A 107 SKHQNV 112 (229)
T ss_dssp CSCCCC
T ss_pred ecCccc
Confidence 987643
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=3.3e-13 Score=114.51 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=71.6
Q ss_pred CccccceEEeeecc-----CCchHHHHHHHHhhhhhhhheeeccccc-ccccceeEEEEeChhhHHHhh--hhccccccc
Q 011518 2 EMELGKLFIGGISW-----DTNEDRLRDYFQAFGEVLEAVIMKDRAT-GRARGFGFIVFADPAVAERVV--MQKHMIDGR 73 (484)
Q Consensus 2 E~d~r~LfVgnLP~-----~~teeeL~e~Fs~~G~V~~v~I~~d~~t-g~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr 73 (484)
...+++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++||+||+|.++++|++|+ ++...+.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35688999999973 3478999999999999999999998654 688999999999999999999 899999999
Q ss_pred eeeecccCC
Q 011518 74 TVEAKKAVP 82 (484)
Q Consensus 74 ~I~V~~a~~ 82 (484)
+|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998865
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=3.9e-13 Score=130.23 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=68.3
Q ss_pred CccccceEEeeeccCC---------chHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccc
Q 011518 2 EMELGKLFIGGISWDT---------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI 70 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~---------teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i 70 (484)
+.+.++|||+|||.++ +|++|+++|++||+|++|+|+.+ ||||||+|.++++|++|+ ++.+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567999999999998 79999999999999999999864 689999999999999999 888888
Q ss_pred ------------ccceeeecccCCCCcc
Q 011518 71 ------------DGRTVEAKKAVPRDDQ 86 (484)
Q Consensus 71 ------------~Gr~I~V~~a~~~~~~ 86 (484)
.++.|.|++|.+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.33 E-value=1.9e-12 Score=109.68 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=70.2
Q ss_pred CccceEEeccc--cccc--------chhHHHHHhhhcCceeeEEEEeeCCC--CCccceeeeeeccHHHHHHHHHHHh-h
Q 011518 103 ARTKKIFVGGL--ASTV--------TESDFKKYFDQFGIITDVVVMYDHNT--QRPRGFGFITYDSEEAVDKVLLKTF-H 169 (484)
Q Consensus 103 ~~~~~LfVgnL--p~~~--------teedL~~~F~~~G~I~~v~i~~d~~t--g~~rG~aFV~F~s~e~A~~Al~~~~-~ 169 (484)
.+++.|.|.|+ |..+ .++||+++|++||.|++|+|++++.+ .+++|++||+|+++++|++|++.|+ +
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888887 4443 34799999999999999999998765 3689999999999999999999999 8
Q ss_pred hhcCeEEEEeecCCC
Q 011518 170 ELNGKMVEVKRAVPK 184 (484)
Q Consensus 170 ~l~Gr~I~V~~a~~k 184 (484)
.|+||+|.|.+..+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987543
No 359
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=1.3e-12 Score=121.65 Aligned_cols=77 Identities=14% Similarity=0.319 Sum_probs=70.8
Q ss_pred cceEEeccccc-ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 105 TKKIFVGGLAS-TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 105 ~~~LfVgnLp~-~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
.++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.++++|++|++.++ ..|.+++|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47899999999 99999999999999999999998774 7899999999999999999887 89999999999988
Q ss_pred CCCC
Q 011518 183 PKEL 186 (484)
Q Consensus 183 ~k~~ 186 (484)
++..
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7643
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.9e-12 Score=104.76 Aligned_cols=68 Identities=7% Similarity=0.202 Sum_probs=59.7
Q ss_pred cccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCCCCCC
Q 011518 115 STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 115 ~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k~~~~ 188 (484)
..+++++|+++|++||.|++|.|+ +++||||||+|+++++|++||+.+ ..+.+++|+|++++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCC
Confidence 468999999999999999999998 368999999999999999999874 45789999999998776443
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1.9e-12 Score=109.48 Aligned_cols=71 Identities=17% Similarity=0.394 Sum_probs=63.5
Q ss_pred ecccccccchhHHHHHh------------hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 110 VGGLASTVTESDFKKYF------------DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 110 VgnLp~~~teedL~~~F------------~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
+.+||+.+++++|+++| ++||.|++|+|++++. ++++|||||+|+++++|++|++.++ +.|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56888888888777666 9999999999998865 7899999999999999999999998 89999999
Q ss_pred EEeec
Q 011518 177 EVKRA 181 (484)
Q Consensus 177 ~V~~a 181 (484)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.8e-12 Score=108.63 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=67.6
Q ss_pred ccccceEEeeeccCC-----------chHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccc
Q 011518 3 MELGKLFIGGISWDT-----------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHM 69 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~-----------teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~ 69 (484)
..+++|+|.||.... ++++|+++|++||+|++|.| .++ .++|||||+|.++++|++|+ ++...
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 357899999994432 26899999999999999966 443 37999999999999999999 88999
Q ss_pred cccceeeecccCCCCcc
Q 011518 70 IDGRTVEAKKAVPRDDQ 86 (484)
Q Consensus 70 i~Gr~I~V~~a~~~~~~ 86 (484)
|.+++|.|.++.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999998876543
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=8e-12 Score=105.05 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=64.6
Q ss_pred cccceEEeeec-------cCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceee
Q 011518 4 ELGKLFIGGIS-------WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVE 76 (484)
Q Consensus 4 d~r~LfVgnLP-------~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~ 76 (484)
..++|.|.-.+ .++||++|+++|++||+|++|.|+. ++||||||+|.++++|++||.....+.+++|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~ 83 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLK 83 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEE
Confidence 35667676555 3479999999999999999999983 57899999999999999999666778899999
Q ss_pred ecccCCCCc
Q 011518 77 AKKAVPRDD 85 (484)
Q Consensus 77 V~~a~~~~~ 85 (484)
|.++.++..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999876643
No 364
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.25 E-value=1.1e-11 Score=121.20 Aligned_cols=76 Identities=28% Similarity=0.521 Sum_probs=69.5
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||+++|+++|+++|++||.|+.|.|.+ .+|||||+|.++++|++|++.++ ..|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 5668999999999999999999999999999999964 36899999999999999999888 8999999999998
Q ss_pred CCC
Q 011518 182 VPK 184 (484)
Q Consensus 182 ~~k 184 (484)
.+.
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 753
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=9.3e-12 Score=107.78 Aligned_cols=80 Identities=10% Similarity=0.179 Sum_probs=68.9
Q ss_pred ccceEEecccc--ccc---chhHHHHHhhhcCceeeEEEEeeCC----CCCccceeeeeeccHHHHHHHHHHHh-hhhcC
Q 011518 104 RTKKIFVGGLA--STV---TESDFKKYFDQFGIITDVVVMYDHN----TQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (484)
Q Consensus 104 ~~~~LfVgnLp--~~~---teedL~~~F~~~G~I~~v~i~~d~~----tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (484)
++++|+|.|+- .++ .++||+++|++||.|++|+|++++. +.+++|++||+|+++++|++|++.++ ..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46788888883 222 3689999999999999999999875 35678999999999999999999999 89999
Q ss_pred eEEEEeecCC
Q 011518 174 KMVEVKRAVP 183 (484)
Q Consensus 174 r~I~V~~a~~ 183 (484)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=3.1e-12 Score=108.19 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=61.7
Q ss_pred EeeeccCCchHHHHHHH------------HhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccccee
Q 011518 10 IGGISWDTNEDRLRDYF------------QAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTV 75 (484)
Q Consensus 10 VgnLP~~~teeeL~e~F------------s~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I 75 (484)
+.+||+++++++|+++| ++||+|++|+|++++ +++++|||||+|.++++|++|+ ++...+.+|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 46777788888877666 999999999999986 4789999999999999999999 89999999999
Q ss_pred eeccc
Q 011518 76 EAKKA 80 (484)
Q Consensus 76 ~V~~a 80 (484)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=1e-11 Score=105.21 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=69.5
Q ss_pred cccceEEeee--ccCCc--------hHHHHHHHHhhhhhhhheeeccccc--ccccceeEEEEeChhhHHHhh--hhccc
Q 011518 4 ELGKLFIGGI--SWDTN--------EDRLRDYFQAFGEVLEAVIMKDRAT--GRARGFGFIVFADPAVAERVV--MQKHM 69 (484)
Q Consensus 4 d~r~LfVgnL--P~~~t--------eeeL~e~Fs~~G~V~~v~I~~d~~t--g~skG~aFVeF~~~e~A~~Al--~~~~~ 69 (484)
.++.|.|.|+ |.++. ++||+++|++||+|++|+|++++.+ .+++|++||+|.++++|++|+ +++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 55543 4689999999999999999998755 368999999999999999999 99999
Q ss_pred cccceeeecccCCC
Q 011518 70 IDGRTVEAKKAVPR 83 (484)
Q Consensus 70 i~Gr~I~V~~a~~~ 83 (484)
+.+|+|.|..+...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999887543
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.21 E-value=9.2e-12 Score=107.81 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=69.2
Q ss_pred cccceEEeeec--cCC---chHHHHHHHHhhhhhhhheeecccc----cccccceeEEEEeChhhHHHhh--hhcccccc
Q 011518 4 ELGKLFIGGIS--WDT---NEDRLRDYFQAFGEVLEAVIMKDRA----TGRARGFGFIVFADPAVAERVV--MQKHMIDG 72 (484)
Q Consensus 4 d~r~LfVgnLP--~~~---teeeL~e~Fs~~G~V~~v~I~~d~~----tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G 72 (484)
.+++|+|.|+- .++ -++||+++|++||+|++|+|++++. +++++|++||+|.++++|++|+ ++...+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999983 333 4689999999999999999999865 3578899999999999999999 99999999
Q ss_pred ceeeecccCC
Q 011518 73 RTVEAKKAVP 82 (484)
Q Consensus 73 r~I~V~~a~~ 82 (484)
|+|.|..+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999988754
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=2e-10 Score=98.74 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=64.4
Q ss_pred CccceEEeccccc----------ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh
Q 011518 103 ARTKKIFVGGLAS----------TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (484)
Q Consensus 103 ~~~~~LfVgnLp~----------~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l 171 (484)
.+++.|.|.|+=. .-.++||+++|++||.|++|.|.++. ++|++||+|++.++|++|++.|+ ..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567788877732 12347899999999999999986553 58999999999999999999999 899
Q ss_pred cCeEEEEeecCC
Q 011518 172 NGKMVEVKRAVP 183 (484)
Q Consensus 172 ~Gr~I~V~~a~~ 183 (484)
+||+|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999754
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.07 E-value=1.8e-10 Score=117.12 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=60.0
Q ss_pred CccccceEEee--eccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc---cc-
Q 011518 2 EMELGKLFIGG--ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID---GR- 73 (484)
Q Consensus 2 E~d~r~LfVgn--LP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~---Gr- 73 (484)
+..+++|||+| |+.++||++|+++|++||+|++|+|.. .||||||+|.+.++|++|+ ++...+. ++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34578999999 689999999999999999999887754 4699999999999999999 7776663 34
Q ss_pred -eeeeccc
Q 011518 74 -TVEAKKA 80 (484)
Q Consensus 74 -~I~V~~a 80 (484)
.+.+..+
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555554
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=1.5e-10 Score=117.65 Aligned_cols=75 Identities=13% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCccceEEecc--cccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh---cCe-
Q 011518 102 PARTKKIFVGG--LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL---NGK- 174 (484)
Q Consensus 102 ~~~~~~LfVgn--Lp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l---~Gr- 174 (484)
..++++|||+| |+..+||++|+++|++||+|++|.|.. .||||||+|++.++|++||+.++ +++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35678999999 688999999999999999999887743 47899999999999999999988 655 345
Q ss_pred -EEEEeecC
Q 011518 175 -MVEVKRAV 182 (484)
Q Consensus 175 -~I~V~~a~ 182 (484)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 46666653
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.9e-09 Score=93.46 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=68.3
Q ss_pred CCCCCCccceEEecccccc-cchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc-HHHHHHHHHHHh---hhhc
Q 011518 98 GSPGPARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTF---HELN 172 (484)
Q Consensus 98 ~~~~~~~~~~LfVgnLp~~-~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s-~e~A~~Al~~~~---~~l~ 172 (484)
.+....+...|+|+||++. +++++|+++|++||.|..|++++++. .|||+|.+ +++|++|+++++ .+|+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3445567899999999999 99999999999999999999998865 59999999 899999999874 5889
Q ss_pred CeEEEEeecC
Q 011518 173 GKMVEVKRAV 182 (484)
Q Consensus 173 Gr~I~V~~a~ 182 (484)
+..++++...
T Consensus 85 g~~~~~evL~ 94 (121)
T 1owx_A 85 NKEVTWEVLE 94 (121)
T ss_dssp SSSEEEEECC
T ss_pred CcEEEEEECC
Confidence 9888886543
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=2.2e-09 Score=92.28 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=63.6
Q ss_pred cccceEEeeeccC----------CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc
Q 011518 4 ELGKLFIGGISWD----------TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (484)
Q Consensus 4 d~r~LfVgnLP~~----------~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~ 71 (484)
.++.|.|.|+=.. --++||+++|++||+|++|+|.++. .+||+||+|.++++|++|+ +++..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4677888887432 1345789999999999999997763 5899999999999999999 9999999
Q ss_pred cceeeecccCCC
Q 011518 72 GRTVEAKKAVPR 83 (484)
Q Consensus 72 Gr~I~V~~a~~~ 83 (484)
+|+|.|.++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999987644
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=6.1e-09 Score=85.25 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=59.8
Q ss_pred ccceEEecccc----cccch----hHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCe
Q 011518 104 RTKKIFVGGLA----STVTE----SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK 174 (484)
Q Consensus 104 ~~~~LfVgnLp----~~~te----edL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr 174 (484)
+.-+|+|.-++ .++.+ .+|.+.|.+||+|+.++|+.|+ +||+|++.++|.+||+ |+ .++.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 44567776665 23334 6799999999999999999873 8999999999999999 66 899999
Q ss_pred EEEEeecCCC
Q 011518 175 MVEVKRAVPK 184 (484)
Q Consensus 175 ~I~V~~a~~k 184 (484)
.|+|++++|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999875
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=5.9e-09 Score=90.28 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=59.5
Q ss_pred cccceEEeeeccC-CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC-hhhHHHhh--h--hccccccceeee
Q 011518 4 ELGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAERVV--M--QKHMIDGRTVEA 77 (484)
Q Consensus 4 d~r~LfVgnLP~~-~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~-~e~A~~Al--~--~~~~i~Gr~I~V 77 (484)
.-+.|||+||+++ +++++|+++|++||+|..|++++++. .|||+|.+ +++|++|+ + .+..|.+..+.+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 3568999999999 99999999999999999999999875 49999999 78888888 2 356667766666
Q ss_pred ccc
Q 011518 78 KKA 80 (484)
Q Consensus 78 ~~a 80 (484)
+..
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.3e-08 Score=82.25 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=59.8
Q ss_pred CccceEEecccccc-----cch----hHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc
Q 011518 103 ARTKKIFVGGLAST-----VTE----SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (484)
Q Consensus 103 ~~~~~LfVgnLp~~-----~te----edL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (484)
++.-+|+|.-++.. +.+ .+|.+.|.+||+|+.++|+.|+ +||+|.+.++|.+||+ ++ .+++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45567888777632 223 5699999999999999999884 9999999999999999 66 9999
Q ss_pred CeEEEEeecCC
Q 011518 173 GKMVEVKRAVP 183 (484)
Q Consensus 173 Gr~I~V~~a~~ 183 (484)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998754
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=5.2e-08 Score=79.72 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=61.2
Q ss_pred ccceEEeeec----cCCch----HHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhcccccccee
Q 011518 5 LGKLFIGGIS----WDTNE----DRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTV 75 (484)
Q Consensus 5 ~r~LfVgnLP----~~~te----eeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I 75 (484)
..+|+|.-+| .++-+ .+|++.|++||+|..++|+.++ +||+|.+.++|.+|| ++...+.+|.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 4678888777 23434 5789999999999999999985 899999999999999 99999999999
Q ss_pred eecccCCC
Q 011518 76 EAKKAVPR 83 (484)
Q Consensus 76 ~V~~a~~~ 83 (484)
+|+.+.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99988764
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=9.2e-08 Score=90.77 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=59.1
Q ss_pred cchhHHHHHhhhcCceeeEEEEeeCC----CCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 117 VTESDFKKYFDQFGIITDVVVMYDHN----TQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 117 ~teedL~~~F~~~G~I~~v~i~~d~~----tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
-.+++|++.|++||.|++|.|+++.. +++++|++||+|.+.++|++|++.++ ..|.||+|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45689999999999999999996654 34899999999999999999999999 89999999999864
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=1.6e-07 Score=77.19 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=59.2
Q ss_pred ccceEEeeeccC-----Cch----HHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccce
Q 011518 5 LGKLFIGGISWD-----TNE----DRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRT 74 (484)
Q Consensus 5 ~r~LfVgnLP~~-----~te----eeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~ 74 (484)
..||+|.-++.+ +-. .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+|| ++...+.+|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 568899887632 322 5689999999999999999986 999999999999999 9999999999
Q ss_pred eeecccC
Q 011518 75 VEAKKAV 81 (484)
Q Consensus 75 I~V~~a~ 81 (484)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998654
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=1.9e-07 Score=88.54 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=58.9
Q ss_pred CCchHHHHHHHHhhhhhhhheeecccc----cccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 16 DTNEDRLRDYFQAFGEVLEAVIMKDRA----TGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 16 ~~teeeL~e~Fs~~G~V~~v~I~~d~~----tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
+-.+++|++.|++||+|++|+|+++.. +++++|++||+|.+.++|++|+ +++..+.||+|.+.....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346678999999999999999986543 4589999999999999999999 999999999999988653
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1e-06 Score=73.37 Aligned_cols=88 Identities=26% Similarity=0.391 Sum_probs=71.4
Q ss_pred cccceEEeeeccCCchHHHHHHHHhh-----hhhhhheeecccccccccceeEEEEeChhhHHHhhhh-ccccccceeee
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAF-----GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ-KHMIDGRTVEA 77 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~-----G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~-~~~i~Gr~I~V 77 (484)
-.++|.|.|||.+++++.|+-+|+.- |+|+.++... .-|+|+|.+++.|+++|.. .|.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 35789999999999999999999872 5777776654 2589999999999999955 99999999999
Q ss_pred cccCCCCcccccccCCCcccCCCCCCccceEEecccccccch
Q 011518 78 KKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTE 119 (484)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~te 119 (484)
....++ ...+|++.+|++.++.
T Consensus 79 ~P~~~~--------------------~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 79 RPAPPR--------------------APARLLLQGLPPGTSG 100 (104)
T ss_dssp EECCCC--------------------CCCCCCCCSCCCCCCC
T ss_pred EcCCCC--------------------CcceEeeecCCCCCCC
Confidence 765433 3467888899887653
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.7e-06 Score=70.05 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred ccceEEecccccccchhHHHHHhhhc-----CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQF-----GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~-----G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
..++|-|-+||.+++++.|+.+.+++ +.|++|.++.|+. -|+|+|++..+|-+|.-.++ .+|++|+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35778888999999999999999999 9999999998865 59999999999888887777 899999999
Q ss_pred Eee
Q 011518 178 VKR 180 (484)
Q Consensus 178 V~~ 180 (484)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=7.6e-06 Score=68.76 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=64.3
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhh-----hhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccccee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAF-----GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTV 75 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~-----G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I 75 (484)
.+.++|=|-|||..++++.|+.|++++ ++++.|.+..|. +=|+|+|+|...|.+|. +++.+|.+|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 357899999999999999999999999 999999988885 35999999999999887 89999999999
Q ss_pred eeccc
Q 011518 76 EAKKA 80 (484)
Q Consensus 76 ~V~~a 80 (484)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 88643
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=2.1e-05 Score=65.51 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=64.7
Q ss_pred CccceEEecccccccchhHHHHHhhhc-----CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQF-----GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~-----G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~ 177 (484)
...++|.|.|||..+.++.|+-+|+.- |+|+.++... .-|+|+|.+.++|+++|++..|.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 456899999999999999999999872 5788877753 269999999999999999878999999999
Q ss_pred EeecCCCCC
Q 011518 178 VKRAVPKEL 186 (484)
Q Consensus 178 V~~a~~k~~ 186 (484)
|....++..
T Consensus 78 V~P~~~~~~ 86 (104)
T 2dhx_A 78 LRPAPPRAP 86 (104)
T ss_dssp EEECCCCCC
T ss_pred EEcCCCCCc
Confidence 988766553
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.001 Score=55.43 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=61.6
Q ss_pred cceEEeccccccc-ch----hHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEE
Q 011518 105 TKKIFVGGLASTV-TE----SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (484)
Q Consensus 105 ~~~LfVgnLp~~~-te----edL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (484)
.++|+|.||+.++ .. ++++++|.+|.++.....++.- | -..|.|.++++|.+|..+++ ..++|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999876 32 4668899999998888777542 1 37899999999999999998 7899999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
-++.+-.
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9987543
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.02 E-value=0.0013 Score=54.07 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=47.8
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.+.+.+.++| .+|.++...||.++|+.||.| .|..+.|. .|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455667777 999999999999999999944 56666553 69999999999999997653
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.91 E-value=0.0013 Score=53.76 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=49.9
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCC--ccceeeeeeccHHHHHHHHHHHh
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR--PRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~--~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.+|.|++||+.+||+++.+.+.....+.....+..+.+.+ .-.-|+|.|.+.+++..-.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 5799999999999999999999888777666665543322 22359999999999888887666
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.71 E-value=0.0016 Score=53.64 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=41.8
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+.++| .+|+++..+||.++|++||. ..|+.+.|- -|||.|.+++.|..|+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 44555 99999999999999999983 455556553 6999999999999998
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.71 E-value=0.0015 Score=53.31 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=46.4
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccccc--ccceeEEEEeChhhHHHhh--hhcccc
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGR--ARGFGFIVFADPAVAERVV--MQKHMI 70 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~--skG~aFVeF~~~e~A~~Al--~~~~~i 70 (484)
+||.|++||+.+||+++.+.+..+.++.....+.-+.+.+ .-.-|+|.|++.|++.... .+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 6899999999999999999999876554443333222211 2245999999999888877 444444
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.58 E-value=0.004 Score=51.91 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=58.8
Q ss_pred ccceEEeeeccCC-ch----HHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeee
Q 011518 5 LGKLFIGGISWDT-NE----DRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (484)
Q Consensus 5 ~r~LfVgnLP~~~-te----eeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V 77 (484)
-++|+|.||+.++ +. ++++++|..|.++.....++.- .-..|.|.++++|.+|- +++..+.+++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999876 33 4668889999988777766642 13689999999999998 8899999999999
Q ss_pred cccCCC
Q 011518 78 KKAVPR 83 (484)
Q Consensus 78 ~~a~~~ 83 (484)
-.+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 988743
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.39 E-value=0.0061 Score=52.09 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=58.5
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcC-eEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-KMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~G-r~I~V~~a 181 (484)
...+-|.|-+.|... .+.|-++|++||+|++.... .....-.|+|+++.+|++||.++...|.+ -.|-|++.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 456788899999986 45677889999999987762 12348999999999999999998777774 77888775
Q ss_pred CC
Q 011518 182 VP 183 (484)
Q Consensus 182 ~~ 183 (484)
..
T Consensus 95 ~d 96 (119)
T 1wwh_A 95 ID 96 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.34 E-value=0.004 Score=51.35 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=45.3
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHH
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~ 167 (484)
+.+.++| .+|.++...||.++|+.|| -..|..+.|. .|||.|.+++.|..|+..+
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455667 9999999999999999999 3456666553 6999999999999999865
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.23 E-value=0.0046 Score=52.89 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=55.9
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhcccccc-ceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDG-RTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~G-r~I~V~~a~ 81 (484)
+.+.|-|=++|.+. ...|.+.|++||+|++..... ..-+-.|+|.++.+|++|| ++...|.+ ..|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 46788899999884 677889999999998877621 2358999999999999999 77777774 566666543
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0024 Score=52.69 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=41.5
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+.++| .+|+++..+||.++|++||. ..|..+.|- -|||.|.+++.|..|+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al 56 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAV 56 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 34566 99999999999999999983 345555552 6999999999999998
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.75 E-value=0.0033 Score=66.00 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=43.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
...|.|||. .|.++++++|.++|++||+|..+.+.+++. -||.|||.++++++.++
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHH
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHH
Confidence 457899996 899999999999999999999988877642 49999999999999887
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.72 E-value=0.0045 Score=50.98 Aligned_cols=65 Identities=5% Similarity=0.029 Sum_probs=45.8
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCC--ccceeeeeeccHHHHHHHHHHHh
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR--PRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~--~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
..-+|.|+.||+.+||+++.+.+...-++.....+..+.+.+ .-.-|+|.|.+.+++..-.+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 356899999999999999998888765543333333222221 12348999999999888886655
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.59 E-value=0.014 Score=50.64 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=55.1
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhhe-eeccc--------ccc-----cccceeEEEEeChhhHHHhh-h
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDR--------ATG-----RARGFGFIVFADPAVAERVV-M 65 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~-I~~d~--------~tg-----~skG~aFVeF~~~e~A~~Al-~ 65 (484)
|+..+..|-|=+.|++.+ ..|.+.|++||.|++-. +.+.. ... ....+-.|+|.++.+|++|| .
T Consensus 3 ~~~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 3 LSNGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -----CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred cccCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 345677888889987754 46788899999988733 32210 001 12467899999999999999 8
Q ss_pred hccccccceeeecccC
Q 011518 66 QKHMIDGRTVEAKKAV 81 (484)
Q Consensus 66 ~~~~i~Gr~I~V~~a~ 81 (484)
+...|.+..|-|++..
T Consensus 82 NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCeEeCcEEEEEEECC
Confidence 8999999887777664
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.24 E-value=0.0076 Score=49.65 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=41.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc-cc-ccceeEEEEeChhhHHHhh
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT-GR-ARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t-g~-skG~aFVeF~~~e~A~~Al 64 (484)
.+-||.|+.||+.+||+++.+.+..+-++.....+.-+.+ +. .-.-|+|.|++.|++....
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~ 70 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFR 70 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence 4679999999999999998888876544332222221111 11 1145899999999988777
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.90 E-value=0.014 Score=61.34 Aligned_cols=56 Identities=16% Similarity=0.382 Sum_probs=42.3
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHH
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~ 165 (484)
..++|+|. .|..+++.+|.++|++||.|.++.+-+++ + -||.|||.+.++++++++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 35789997 89999999999999999999998877553 2 499999999999987764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.57 E-value=0.018 Score=49.94 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=55.2
Q ss_pred cceEEecccccccchhHHHHHhhhcCceee-EEEEee--------CCCCC-----ccceeeeeeccHHHHHHHHHHHhhh
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYD--------HNTQR-----PRGFGFITYDSEEAVDKVLLKTFHE 170 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~-v~i~~d--------~~tg~-----~rG~aFV~F~s~e~A~~Al~~~~~~ 170 (484)
..-|.|-+.|++.++. +-+.|++||.|.+ +.+.++ ++..+ ......|+|+++.+|++||.++...
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3457777888876655 5578999999876 222110 00011 2456799999999999999999989
Q ss_pred hcCeEEEEeecCC
Q 011518 171 LNGKMVEVKRAVP 183 (484)
Q Consensus 171 l~Gr~I~V~~a~~ 183 (484)
|.|..|-|++..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.88 E-value=1.6 Score=46.24 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=44.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.+...++|+ +|..+...||+++|+.|+.| +|..+.|. .|||.|.+.++|..++....
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 455666776 88899999999999999953 55554332 69999999999999887653
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.42 E-value=1.7 Score=45.93 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=40.1
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
.+.++|+ +|..+...+|.++|+.|+. .+|..+.+ -.|||.|.+++.|..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHH
Confidence 3455665 9999999999999999984 34444443 26999999999999988
No 403
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=65.66 E-value=34 Score=31.94 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=56.6
Q ss_pred eccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEe---ChhhHHHhh-----hhccc---cccceeeecccC
Q 011518 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA---DPAVAERVV-----MQKHM---IDGRTVEAKKAV 81 (484)
Q Consensus 13 LP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~---~~e~A~~Al-----~~~~~---i~Gr~I~V~~a~ 81 (484)
+..++.+.+|+++|..++++..+.++.++. -+|-.=+.+. +.+++..++ .++.. .++..+.|..+.
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~---V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPG---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC------CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 455677888999999999999999888863 2344444554 355555554 23322 246777776553
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhc
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~ 129 (484)
....................+..++.+.+.+....--...|+.++..-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 86 AAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp ------------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred HhhhcCCccccCCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 322111100000000001112234455566555555555677777654
No 404
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=59.47 E-value=22 Score=28.98 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=46.3
Q ss_pred ccccccchhHHHHHh-hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCC
Q 011518 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (484)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k 184 (484)
-++..+.-+||.... +.||.-.++... +. ...|-..+.+++++||+.++..-.=+.|+|-...++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 457778888887666 678987776665 22 478999999999999999885444455555444444
No 405
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=56.12 E-value=83 Score=25.76 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=78.5
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeCh----hhHHHhhhhccccccceee
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP----AVAERVVMQKHMIDGRTVE 76 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~----e~A~~Al~~~~~i~Gr~I~ 76 (484)
|.+...+|.|.++.-.--...|+..+...-.|..+.+-... .-+.|+|... +...+++.. .+..+.
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~----~G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQD----LGFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHH----HTCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhc----CCCceE
Confidence 56667788898888777778888888886556665553321 2356777532 222233211 122221
Q ss_pred ecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc
Q 011518 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (484)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (484)
+..... ......+|.|.++.-..-...|++.+.+.--|..+.+-.. ...+.|+|+.
T Consensus 71 ~~~~~~------------------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 126 (149)
T 2ew9_A 71 VMEDYA------------------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDP 126 (149)
T ss_dssp ECSCSC------------------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCT
T ss_pred eecccc------------------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECC
Confidence 110000 0112346778888776666788999988877877776433 2257888863
Q ss_pred ----HHHHHHHHHHH
Q 011518 157 ----EEAVDKVLLKT 167 (484)
Q Consensus 157 ----~e~A~~Al~~~ 167 (484)
.+++.++|+..
T Consensus 127 ~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 127 EIIGPRDIIKIIEEI 141 (149)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC
Confidence 45666666554
No 406
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=52.38 E-value=78 Score=28.33 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=69.6
Q ss_pred eccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEe---ChhhHHHhh---h--hcccc--c-----------
Q 011518 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA---DPAVAERVV---M--QKHMI--D----------- 71 (484)
Q Consensus 13 LP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~---~~e~A~~Al---~--~~~~i--~----------- 71 (484)
+..++.+.+|+++|..++++....++.++. -+|-.-|... +.+.+..++ + ++..+ .
T Consensus 9 ~slnf~~~~i~~vl~~la~~~g~n~vv~~~---V~G~vTl~s~~pl~~~~~~~~l~~vL~~~Gl~~~~~~~~~~~~~y~~ 85 (181)
T 3oss_D 9 FTANFKDTDLKSFIETVGANLNKTIIMGPG---VQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMYIDTNNDGYIE 85 (181)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTCCEEECSC---CCCEEEEEESSCEEHHHHHHHHHHHHHHHTEEEEEEECCTTSSSCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCcEEECCC---CceEEEEEecCCCCHHHHHHHHHHHHHHCCCEEEEeecccccccccc
Confidence 455677888999999999999999888753 2343333322 344555554 2 22111 1
Q ss_pred --cceeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhc--CceeeEEEEeeCCCCCcc
Q 011518 72 --GRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF--GIITDVVVMYDHNTQRPR 147 (484)
Q Consensus 72 --Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~--G~I~~v~i~~d~~tg~~r 147 (484)
+..+.|......+.................+..++.+.|.++...--...|+.++++- |.|. .|..+
T Consensus 86 ~~g~v~~V~p~~~a~~~~~~~~~~~~~~~~~~~l~t~v~~L~y~~A~el~~~L~~lls~~~~g~v~-----~d~~t---- 156 (181)
T 3oss_D 86 GDELVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVV-----NYDPS---- 156 (181)
T ss_dssp GGGEEEEEEEC------------------CTTCEEEEEEECSSSCGGGGHHHHHHHHHHHCTTCEE-----EEETT----
T ss_pred cCCCEEEEEechhhhhcccccccccccccccCCcEEEEEEeecCCHHHHHHHHHHhcCcccCceEE-----EeCCC----
Confidence 5555555443211111000000000001122234556666666665556677777665 5443 22222
Q ss_pred ceeeeeeccHHHHHHHHHH
Q 011518 148 GFGFITYDSEEAVDKVLLK 166 (484)
Q Consensus 148 G~aFV~F~s~e~A~~Al~~ 166 (484)
-.+|.-.+++.++++.+.
T Consensus 157 -N~Liv~d~~~~i~~i~~l 174 (181)
T 3oss_D 157 -NVIMLTGRASVVERLTEV 174 (181)
T ss_dssp -TEEEEEEEHHHHHHHHHH
T ss_pred -CEEEEEeCHHHHHHHHHH
Confidence 256666666666655543
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.45 E-value=56 Score=26.10 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=53.2
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h-------hhcCeE
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H-------ELNGKM 175 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~-------~l~Gr~ 175 (484)
..+.|-|-|+|..+-..++.-.....|---.|+.+. |-|.|.|.+.++...|+.++- + ++.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 446677889999998888877777777766776652 359999999999999998753 2 566666
Q ss_pred EEEeecCC
Q 011518 176 VEVKRAVP 183 (484)
Q Consensus 176 I~V~~a~~ 183 (484)
+.|-...|
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 66654444
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.02 E-value=54 Score=26.23 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=40.1
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
..+-|-|=|||..+-+.|+.-.....|---.|..+. |-|.|.|.+.++...|+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlai 63 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHH
Confidence 456788999999999988887777666332333332 56999999999988888
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.18 E-value=68 Score=28.72 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=33.1
Q ss_pred cchhHHHHHh--hhcCceeeEEEEeeCCCCCccceeeeeecc-HHHHHHHHHHHh
Q 011518 117 VTESDFKKYF--DQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTF 168 (484)
Q Consensus 117 ~teedL~~~F--~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s-~e~A~~Al~~~~ 168 (484)
...++|++.| ..|.++. |+.+.++. -.+|++.|+|.. -.-...|+...+
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHHHH
Confidence 3457899977 8898765 55555543 467899999965 455566665544
No 410
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=40.18 E-value=32 Score=31.08 Aligned_cols=117 Identities=9% Similarity=-0.061 Sum_probs=56.9
Q ss_pred ceEEeeec----cCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhh---HHHhh-hhccccccceeeec
Q 011518 7 KLFIGGIS----WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV---AERVV-MQKHMIDGRTVEAK 78 (484)
Q Consensus 7 ~LfVgnLP----~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~---A~~Al-~~~~~i~Gr~I~V~ 78 (484)
.+++++|. ..+.-.||+++|+..| ..+|+-... + | =|.|.+.++ .++.| ..-..-.+..+.|-
T Consensus 8 iaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S----G--NvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~ 78 (183)
T 2hiy_A 8 ALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S----G--NIFFTSIDSKAQLVEKLETFFAVHYPFIQSFS 78 (183)
T ss_dssp EEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T----T--EEEEEECSCHHHHHHHHHHHHHHHCTTCCCCE
T ss_pred hhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c----C--CEEEecCCCHHHHHHHHHHHHHHhcCCCCCEE
Confidence 46677773 4588999999999987 455554432 2 2 255654432 22222 11111223333222
Q ss_pred ccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcC-ceeeEEE
Q 011518 79 KAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG-IITDVVV 137 (484)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i 137 (484)
.-...+........+.... ....+++|-=|+..++.++|.+.+...- ..+++.+
T Consensus 79 vrs~~el~~i~~~~Pf~~~-----~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~ 133 (183)
T 2hiy_A 79 LLSLEDFEAELENLPAWWS-----RDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYF 133 (183)
T ss_dssp EEEHHHHHHHHTTCCGGGG-----SCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEE
T ss_pred EecHHHHHHHHHhCCCCcc-----CCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEE
Confidence 1111111111111111111 1346677777788888888777665433 3344544
No 411
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=39.32 E-value=1e+02 Score=28.75 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=42.1
Q ss_pred eeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC---hhhHHHhh---h--hcc--ccccceeeecccC
Q 011518 12 GISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD---PAVAERVV---M--QKH--MIDGRTVEAKKAV 81 (484)
Q Consensus 12 nLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~---~e~A~~Al---~--~~~--~i~Gr~I~V~~a~ 81 (484)
.+..++.+.+|+++|..++++..+.++.++. -+|-.=+.+.+ ++++..++ + ++. ...+..+.|....
T Consensus 21 ~vslnf~~~~i~~vl~~la~~~g~nivvdp~---V~G~VTl~~~~pv~~~~~~~~l~~vL~~~gl~~~~~g~v~~V~p~~ 97 (246)
T 4e9j_A 21 HWTINLKDADIREFIDQISEITGETFVVDPR---VKGQVSVVSKAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNA 97 (246)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHCCCEEECTT---CCCEEEEEEEEEEEHHHHHHHHHHHHHHTTEEEEECSSSEEEEECC
T ss_pred cEEEEecCCCHHHHHHHHHHHhCCeEEECCC---CceEEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEeCCEEEEeehh
Confidence 3556678889999999999999999888753 23433344433 56665555 2 221 2256666666544
No 412
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=38.75 E-value=1.2e+02 Score=24.05 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=45.3
Q ss_pred ccccccchhHHHHHh-hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCC
Q 011518 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (484)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~ 183 (484)
-++..+.-+||++.. ..||.-.++..+.+ .-.|-..+.++.++|++.++....=|.|+|-...+
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEEcC
Confidence 356677778887666 56898877776622 36788899999999999988545455555544443
No 413
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=37.91 E-value=1.1e+02 Score=24.72 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=42.9
Q ss_pred ccccccchhHHHHHh-hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEE
Q 011518 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (484)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V 178 (484)
-++..+.-+||++.. ..||.-.++..+.+ .-.|-..+.++.++|++.++....=+.|+|
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrI 94 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI 94 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEE
Confidence 457778888887766 56998888777632 367888999999999999885444444444
No 414
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=36.58 E-value=42 Score=25.13 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=34.4
Q ss_pred ccchhHHHHHhhhcC-----ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 116 TVTESDFKKYFDQFG-----IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 116 ~~teedL~~~F~~~G-----~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
.+...+|..++..-+ .|-.|+|..+ |.||+-.... ++++++.+. ..++++++.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 456667776665433 3455666432 7888886554 667777776 68899999988764
No 415
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=36.41 E-value=1e+02 Score=25.16 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=43.0
Q ss_pred ccccccchhHHHHHh-hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEe
Q 011518 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (484)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (484)
-++..+.-+||++.. ..||.-.++..+.+ .-.|-..+.++.++|++.++....=|.|+|-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl 106 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRIL 106 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEE
Confidence 456777888887666 56898888777632 3578889999999999998854444444443
No 416
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=34.88 E-value=2.1e+02 Score=25.96 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=17.5
Q ss_pred ccccceEEeeeccCCc-hHHHHHHHHhhh
Q 011518 3 MELGKLFIGGISWDTN-EDRLRDYFQAFG 30 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~t-eeeL~e~Fs~~G 30 (484)
++..+|-|.++|...- -.+|.+.|++.+
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~ 61 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADAD 61 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhC
Confidence 4567788888886642 235555555555
No 417
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.13 E-value=1.3e+02 Score=23.68 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=16.5
Q ss_pred ccceeEEEEeChhhHHHhh
Q 011518 46 ARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 46 skG~aFVeF~~~e~A~~Al 64 (484)
.+||-||++...++...++
T Consensus 49 fPGYVfVe~~~~~~~~~~I 67 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELI 67 (92)
T ss_dssp STTEEEEEESSHHHHHHHH
T ss_pred cCCEEEEEEecchhHHHHH
Confidence 7899999999888887777
No 418
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=32.10 E-value=1.1e+02 Score=22.03 Aligned_cols=56 Identities=11% Similarity=-0.010 Sum_probs=40.6
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHH
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~ 167 (484)
..++.|.++.-.--...|++.+.+ --|..+.+-.. .+.+.|+|++.+++.++|+..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 456888888877777889999988 77877776432 235778888666777777554
No 419
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=31.95 E-value=77 Score=24.35 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=37.9
Q ss_pred eeEEEEeChhhHHHhhhhccccccc---eeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHH
Q 011518 49 FGFIVFADPAVAERVVMQKHMIDGR---TVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125 (484)
Q Consensus 49 ~aFVeF~~~e~A~~Al~~~~~i~Gr---~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~ 125 (484)
|.++.|....++.+-|.....++.. .+.|+...+ ..-..+|| |.++++|++++++
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~--------------------r~YE~m~I--l~P~l~ee~~~~~ 64 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP--------------------GRYEVNIV--LNPNLDQSQLQNE 64 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST--------------------TEEEEEEE--ECTTCCHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC--------------------CceEEEEE--ECCCCCHHHHHHH
Confidence 7889998776666666444444443 333332221 22345776 6788999999998
Q ss_pred hhhcCc
Q 011518 126 FDQFGI 131 (484)
Q Consensus 126 F~~~G~ 131 (484)
.++|-.
T Consensus 65 vek~~~ 70 (77)
T 3zzp_A 65 KEIIQR 70 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888743
No 420
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=31.10 E-value=60 Score=26.74 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHh-hhhhhhheeeccccc----ccccceeEEEEeChhhHHHhh
Q 011518 16 DTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 16 ~~teeeL~e~Fs~-~G~V~~v~I~~d~~t----g~skG~aFVeF~~~e~A~~Al 64 (484)
..+..||++.+.+ |..-.++.++..-.| ++++|||.| |.+.+.|++.-
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~E 90 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYIE 90 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 5688999998877 443344444433222 577888877 77777777654
No 421
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=29.70 E-value=1.9e+02 Score=23.74 Aligned_cols=61 Identities=8% Similarity=0.043 Sum_probs=37.9
Q ss_pred cceEEecccccccchhHHHHHhhh-------cCceeeEEEEeeCCC-CCccce---eeeeeccHHHHHHHHH
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNT-QRPRGF---GFITYDSEEAVDKVLL 165 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~-------~G~I~~v~i~~d~~t-g~~rG~---aFV~F~s~e~A~~Al~ 165 (484)
-+.|.+-.|...+++++++++.+. ...|+.+.+-++... .+.++| ..++|++.++.++-+.
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 21 LYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp EEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 344555578888888776655543 445677777665431 333444 3458899888876554
No 422
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.20 E-value=58 Score=26.41 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCchHHHHHHHHh-hhhhhhheeeccccc----ccccceeEEEEeChhhHHHh
Q 011518 16 DTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERV 63 (484)
Q Consensus 16 ~~teeeL~e~Fs~-~G~V~~v~I~~d~~t----g~skG~aFVeF~~~e~A~~A 63 (484)
..+..||++.+.+ |..-.++.++..-.| ++++|||.| |.+.+.|++.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5688999998877 544344444443223 467777766 5666666544
No 423
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=28.39 E-value=1.6e+02 Score=24.04 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=36.4
Q ss_pred ceEEecccccccchhHHHHHhhh-------cCceeeEEEEeeCCCCCccce---eeeeeccHHHHHHHHH
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNTQRPRGF---GFITYDSEEAVDKVLL 165 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~-------~G~I~~v~i~~d~~tg~~rG~---aFV~F~s~e~A~~Al~ 165 (484)
+.|.+-.|...+++++++++.+. ...|+.+.+-++.. .+.++| -.++|++.++.++-..
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 44555578888888876666554 33456666666543 333444 3457888888776553
No 424
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=27.92 E-value=1.9e+02 Score=24.98 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=36.8
Q ss_pred eccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC--hhhHHHhhhh--c--cccccceeeecccCC
Q 011518 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD--PAVAERVVMQ--K--HMIDGRTVEAKKAVP 82 (484)
Q Consensus 13 LP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~--~e~A~~Al~~--~--~~i~Gr~I~V~~a~~ 82 (484)
+..++.+.+|+++|..+++...+.++.++. -+|-.=+.+.+ .++|-..++. + ....+..+.|.....
T Consensus 8 ~sl~f~~~~i~~vl~~la~~~g~nivi~~~---V~G~vTl~l~~v~~~~~l~~vl~~~gl~~~~~g~vl~V~~~~~ 80 (175)
T 2y3m_A 8 FSIRLKQAPLVPTLQQLALAHNTNLIIDDE---LQGTVSLQLENVDLDQLFRSVAKIKQLDLWQENGIYYFTKGDT 80 (175)
T ss_dssp EEEEEEECCHHHHHHHSCCCTTCEEEEC--------CCEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEEC---
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEeCCC---CceEEEEEEcCCCHHHHHHHHHHHCCceEEEECCEEEEEchHH
Confidence 445677888999999999999988887752 12222344443 3344433322 1 233456676665543
No 425
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.58 E-value=55 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=31.0
Q ss_pred cCCchHHHHHHHHh-hhhhhhheeeccccc----ccccceeEEEEeChhhHHHhh
Q 011518 15 WDTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 15 ~~~teeeL~e~Fs~-~G~V~~v~I~~d~~t----g~skG~aFVeF~~~e~A~~Al 64 (484)
...+..||++.+.+ |..-.++.++..-.| ++++|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45788999998887 444334444433222 577788876 67777776554
No 426
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=27.49 E-value=1.7e+02 Score=23.08 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=34.8
Q ss_pred EEecccccccchhHHHHHhh-------hcCceeeEEEEeeCCCCCccce---eeeeeccHHHHHHHH
Q 011518 108 IFVGGLASTVTESDFKKYFD-------QFGIITDVVVMYDHNTQRPRGF---GFITYDSEEAVDKVL 164 (484)
Q Consensus 108 LfVgnLp~~~teedL~~~F~-------~~G~I~~v~i~~d~~tg~~rG~---aFV~F~s~e~A~~Al 164 (484)
|.+-.|...+++++++++.+ +...|+.+.+-++.. .+.++| -.++|++.++.++-.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~ 73 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQ 73 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHh
Confidence 44446777777766555553 355677777776643 344444 345889988876644
No 427
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.38 E-value=58 Score=26.62 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=30.8
Q ss_pred cCCchHHHHHHHHh-hhhhhhheeecccc----cccccceeEEEEeChhhHHHhh
Q 011518 15 WDTNEDRLRDYFQA-FGEVLEAVIMKDRA----TGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 15 ~~~teeeL~e~Fs~-~G~V~~v~I~~d~~----tg~skG~aFVeF~~~e~A~~Al 64 (484)
...+..||++.+.+ |..-.++.++..-. .++++|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~E 81 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATIE 81 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45788999998887 44333344433322 2577788876 67777776553
No 428
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.88 E-value=15 Score=30.25 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=33.4
Q ss_pred cchhHHHHHhhhcCceeeEEEEeeCCCCCccceeee--eeccHHHHHHHHHHHhhhhc
Q 011518 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDKVLLKTFHELN 172 (484)
Q Consensus 117 ~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV--~F~s~e~A~~Al~~~~~~l~ 172 (484)
.++++|+++..+.. +..+.|.+....+++. |..| .|.+.++|++|++.+..+|.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 45667777777765 3445554432223321 3222 68999999999998876554
No 429
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=24.61 E-value=2.2e+02 Score=22.81 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=37.3
Q ss_pred ceEEecccccccchhHHHHHhhh-------cCceeeEEEEeeCCC-CCccce---eeeeeccHHHHHHHHH
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNT-QRPRGF---GFITYDSEEAVDKVLL 165 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~-------~G~I~~v~i~~d~~t-g~~rG~---aFV~F~s~e~A~~Al~ 165 (484)
+.|.+-.|...+++++++++.+. ...|+.+.+-++... .+.++| -.++|++.++.+.-..
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 44555578888888776655543 445677777665432 233444 4458999998877554
No 430
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=24.31 E-value=2e+02 Score=24.07 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=44.1
Q ss_pred ceEEecccccccchhHH---HHHhhhcCceeeEEEEeeCCCCCccceeeeee--ccHHHHHHHHHHHh---hh-------
Q 011518 106 KKIFVGGLASTVTESDF---KKYFDQFGIITDVVVMYDHNTQRPRGFGFITY--DSEEAVDKVLLKTF---HE------- 170 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL---~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F--~s~e~A~~Al~~~~---~~------- 170 (484)
-.|.|.++|..+..|-- +.+-..|..-+...|+ +...|.--|.| ++.++.++|++.|- ..
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 34667888887766432 2333456555556665 33445677788 67899999998764 23
Q ss_pred -hcCeEEEEeec
Q 011518 171 -LNGKMVEVKRA 181 (484)
Q Consensus 171 -l~Gr~I~V~~a 181 (484)
|.|..|+|...
T Consensus 118 tl~gn~l~i~it 129 (170)
T 4hhu_A 118 TLSGNRLVIVIT 129 (170)
T ss_dssp EECSSEEEEEEE
T ss_pred EEeCCEEEEEEe
Confidence 44556666553
No 431
>4av2_A PILQ, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=24.27 E-value=42 Score=37.01 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=43.1
Q ss_pred eeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC--hhhHHHhhhhc----cccccceeeecc
Q 011518 12 GISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD--PAVAERVVMQK----HMIDGRTVEAKK 79 (484)
Q Consensus 12 nLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~--~e~A~~Al~~~----~~i~Gr~I~V~~ 79 (484)
.|..++.+.+|+++|.-+.+...+.|+.++. -+|-.=+.+++ .++|-+.|+.. ....+..|.|..
T Consensus 323 ~ISLnF~d~~vr~VL~~LA~~tg~NiV~~~~---V~G~VTL~L~nVp~~qaLd~IL~~~GL~~~~~gnvi~V~p 393 (745)
T 4av2_A 323 KISLDFQDVEIRTILQILAKESGMNIVASDS---VNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAP 393 (745)
T ss_dssp EECCEEEEEEHHHHHHHHHHTTSCEEEECSS---CCCEEEEECCSEEHHHHHHHHHHHTCCEEEECSSEEEEEC
T ss_pred eEEEEecCCCHHHHHHHHHHHhCCeEEECCC---CCceEEEEEeCCcHHHHHHHHHHhcCceEEEcCCEEEEEc
Confidence 4556677889999999999999999888753 23334455655 46666666322 234566777754
No 432
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.49 E-value=2.3e+02 Score=29.35 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=35.2
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhh---hhhhheeecccccccccceeEE-EEeChhhHHHhh
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFG---EVLEAVIMKDRATGRARGFGFI-VFADPAVAERVV 64 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G---~V~~v~I~~d~~tg~skG~aFV-eF~~~e~A~~Al 64 (484)
+..+|.|..||..++.++|.+.....- .+..|.=++|..+. ..+.-|| +++....++..+
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd-~~gvrivI~lk~~~~~~~~l 298 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD-RVGLRIVIEIKRDAVAKVVI 298 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBT-TTBCCEEEEECTTSCHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCC-CCceEEEEEECCCCCHHHHH
Confidence 345799999999999999888776642 23334444553122 2345554 444444444333
No 433
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=22.17 E-value=1.1e+02 Score=26.75 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=31.6
Q ss_pred cCCchHHHHHHHHh-hhhhhhheeeccccc----ccccceeEEEEeChhhHHHhh
Q 011518 15 WDTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 15 ~~~teeeL~e~Fs~-~G~V~~v~I~~d~~t----g~skG~aFVeF~~~e~A~~Al 64 (484)
..++..||++.+.. |..-.++.++..-.| +++.|||.| |.+.|.|.+.-
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~E 84 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKYE 84 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhhC
Confidence 35788999999887 544344444443222 477788877 67777776554
No 434
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=21.37 E-value=97 Score=26.60 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHh-hhhhhhheeeccccc----ccccceeEEEEeChhhHHHhh
Q 011518 16 DTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 16 ~~teeeL~e~Fs~-~G~V~~v~I~~d~~t----g~skG~aFVeF~~~e~A~~Al 64 (484)
.++.+||++.+.. |..-.++.++..-.| +++.|||.| |.+.|.|.+.-
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~E 86 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKFE 86 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhcC
Confidence 5789999999976 554334444433222 467778777 67777766543
No 435
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=21.29 E-value=2.6e+02 Score=22.08 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=36.8
Q ss_pred ceEEecccccccchhHHHHHhhh-------cCceeeEEEEeeCCC---CCccce---eeeeeccHHHHHHHHH
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNT---QRPRGF---GFITYDSEEAVDKVLL 165 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~-------~G~I~~v~i~~d~~t---g~~rG~---aFV~F~s~e~A~~Al~ 165 (484)
+.|.+-.|...+++++++++.+. ...|+.+.+-.+... .+.++| -.++|++.++.++-..
T Consensus 10 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (108)
T 1tr0_A 10 KHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLD 82 (108)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHT
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHHhC
Confidence 34445578888888776555443 455777777665432 333444 3458899888776553
No 436
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.24 E-value=38 Score=32.52 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
....+.|.|||+.++..-|.++++....+..+.+|..+ |.|++.+
T Consensus 113 ~~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk----------------Eva~Rl~ 157 (279)
T 3uzu_A 113 EPSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN----------------EVVERMV 157 (279)
T ss_dssp SCCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH----------------HHHHHHT
T ss_pred CCceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH----------------HHHHHHh
No 437
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.13 E-value=63 Score=30.81 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=0.0
Q ss_pred eEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 8 LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+.|.|||+.++..-|.++++. ..+..+.+|..+ |.|++.+
T Consensus 113 ~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Qk----------------Eva~Rl~ 152 (271)
T 3fut_A 113 LLVANLPYHIATPLVTRLLKT-GRFARLVFLVQK----------------EVAERMT 152 (271)
T ss_dssp EEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEH----------------HHHHHHT
T ss_pred EEEecCcccccHHHHHHHhcC-CCCCEEEEEeee----------------eeeeecc
Done!