Query 011523
Match_columns 484
No_of_seqs 188 out of 499
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5ea2 c.47.1.2 (A:142-239) P 28.0 6.2 0.00045 31.1 0.1 35 405-440 24-62 (98)
2 d1kf6d_ f.21.2.2 (D:) Fumarate 23.0 1.7E+02 0.012 23.3 8.2 80 185-265 19-104 (119)
3 d1zl8a1 a.194.1.1 (A:4-53) Lin 15.2 28 0.0021 24.0 1.3 14 102-115 35-48 (50)
4 d1y74a1 a.194.1.1 (A:17-73) Li 13.8 37 0.0027 23.9 1.7 14 102-115 36-49 (57)
5 d1k8ua_ a.39.1.2 (A:) Calcycli 10.0 40 0.0029 25.3 0.9 18 403-420 3-20 (89)
6 d1ijdb_ f.3.1.1 (B:) Light-har 9.5 53 0.0038 21.5 1.2 16 308-323 25-40 (40)
7 d1ksoa_ a.39.1.2 (A:) Calcycli 8.8 49 0.0036 24.9 1.0 19 402-420 2-20 (93)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.8 2E+02 0.015 16.8 3.2 16 233-248 9-24 (26)
9 d1nkzb_ f.3.1.1 (B:) Light-har 7.5 59 0.0043 21.4 0.7 18 307-324 23-40 (41)
10 d3c1va1 a.39.1.2 (A:2-94) Calc 7.0 64 0.0046 24.1 0.9 18 403-420 3-20 (93)
No 1
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.00 E-value=6.2 Score=31.09 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred hhhh--hhhhhhhhhhhHhhhhhhhhhhc--cCCCCCccc
Q 011523 405 ERGI--AKINKTFHQISENVKRHEKERKR--SSKDDSYLI 440 (484)
Q Consensus 405 e~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 440 (484)
..|+ .-+|||||++.++...-=- +.+ ..++|..++
T Consensus 24 ~~Gv~d~~fNeTF~~~A~~l~~Dy~-Fvs~~~~~~~~kLs 62 (98)
T d2b5ea2 24 QSGKIDADFNATFYSMANKHFNDYD-FVSAENADDDFKLS 62 (98)
T ss_dssp EEESCCHHHHHHHHHHHHHTTTTCE-EEEEECTTSCCEEE
T ss_pred eCCccccchhHHHHHHHHHhhcceE-EEeccCCCCCccEE
Confidence 6777 5899999999998775433 333 234555554
No 2
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=22.97 E-value=1.7e+02 Score=23.29 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=56.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHhccccCCccccccc----chhh-HHHHHHHHHHHHHH-HHHHHHhhhhccCCCCCcc
Q 011523 185 KIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYG----YPYL-AVVLNFSQTWALYC-LVQFYSVTKDKLEPIKPLA 258 (484)
Q Consensus 185 K~gVLQyvivKPl~ailaiIle~~GvY~eg~~~~~~~----ylyl-~iI~niS~~lALY~-Lv~FY~a~ke~L~p~~Pl~ 258 (484)
--|=.=..++-|++-++.=++-..|..+.+..+.... +-|+ .++....+.+.||| +-.+|+.+|| |+=+.|.+
T Consensus 19 gAGGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglHD-lkih~p~g 97 (119)
T d1kf6d_ 19 GAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAG 97 (119)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTH
T ss_pred cCCchhHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccch
Confidence 3455567788888888888888899988776654432 3344 45556667777776 6777888776 77778999
Q ss_pred hhhHHHH
Q 011523 259 KFLTFKS 265 (484)
Q Consensus 259 KFl~IK~ 265 (484)
|.+|--+
T Consensus 98 ~~~fYg~ 104 (119)
T d1kf6d_ 98 KWVFYGL 104 (119)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 9988644
No 3
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.20 E-value=28 Score=23.97 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHH
Q 011523 102 AAFNCEVIRDCYEA 115 (484)
Q Consensus 102 ~aiy~d~iRd~YEA 115 (484)
-|-||+.+|++||-
T Consensus 35 qSdF~~avREVYe~ 48 (50)
T d1zl8a1 35 QSEFFGAVREVYET 48 (50)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45789999999995
No 4
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.82 E-value=37 Score=23.93 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHH
Q 011523 102 AAFNCEVIRDCYEA 115 (484)
Q Consensus 102 ~aiy~d~iRd~YEA 115 (484)
-|-||+.+|++||-
T Consensus 36 qSdF~~avREVYeh 49 (57)
T d1y74a1 36 QSRFCSAIREVYEQ 49 (57)
T ss_dssp HSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46799999999995
No 5
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=10.01 E-value=40 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=16.7
Q ss_pred chhhhhhhhhhhhhhhhH
Q 011523 403 PVERGIAKINKTFHQISE 420 (484)
Q Consensus 403 p~e~~~~~~~~~~~~~~~ 420 (484)
|+|+.+..+=++||+.|.
T Consensus 3 plE~ai~~ii~vF~kya~ 20 (89)
T d1k8ua_ 3 PLDQAIGLLVAIFHKYSG 20 (89)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcc
Confidence 899999999999999974
No 6
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=9.52 E-value=53 Score=21.51 Aligned_cols=16 Identities=38% Similarity=0.712 Sum_probs=13.2
Q ss_pred HHHHHHHhhcccCccC
Q 011523 308 GIAAVVHLYVFPARPY 323 (484)
Q Consensus 308 ~i~Ailh~~aFp~~pY 323 (484)
.++.++|..+|.++|+
T Consensus 25 ~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 25 VIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 5677889999999886
No 7
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=8.81 E-value=49 Score=24.92 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=17.4
Q ss_pred cchhhhhhhhhhhhhhhhH
Q 011523 402 EPVERGIAKINKTFHQISE 420 (484)
Q Consensus 402 ~p~e~~~~~~~~~~~~~~~ 420 (484)
+|+|+.+..+=++||+.+.
T Consensus 2 ~plE~~i~~i~~vF~kya~ 20 (93)
T d1ksoa_ 2 RPLEQAVAAIVCTFQEYAG 20 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHcC
Confidence 6999999999999999874
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.80 E-value=2e+02 Score=16.76 Aligned_cols=16 Identities=19% Similarity=0.467 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 011523 233 QTWALYCLVQFYSVTK 248 (484)
Q Consensus 233 ~~lALY~Lv~FY~a~k 248 (484)
..|++++|+++|..+.
T Consensus 9 ~fw~ffalli~ylqte 24 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTE 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4678888999997764
No 9
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.47 E-value=59 Score=21.37 Aligned_cols=18 Identities=39% Similarity=0.818 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcccCccCc
Q 011523 307 MGIAAVVHLYVFPARPYK 324 (484)
Q Consensus 307 M~i~Ailh~~aFp~~pY~ 324 (484)
-.++.++|..+|.++|+-
T Consensus 23 ~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 356778899999999874
No 10
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}
Probab=7.04 E-value=64 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=16.4
Q ss_pred chhhhhhhhhhhhhhhhH
Q 011523 403 PVERGIAKINKTFHQISE 420 (484)
Q Consensus 403 p~e~~~~~~~~~~~~~~~ 420 (484)
|+|+.+..+-+.||+.+.
T Consensus 3 plE~~i~~l~~~F~~ya~ 20 (93)
T d3c1va1 3 PLEKALDVMVSTFHKYSG 20 (93)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcc
Confidence 899999999999999864
Done!