Query 011525
Match_columns 484
No_of_seqs 304 out of 2051
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0804 Cytoplasmic Zn-finger 100.0 3E-127 6E-132 977.6 38.0 460 1-483 4-492 (493)
2 PF07576 BRAP2: BRCA1-associat 100.0 2.7E-30 5.9E-35 225.5 12.9 105 56-161 3-108 (110)
3 PF02148 zf-UBP: Zn-finger in 99.6 2.9E-17 6.2E-22 130.0 -0.1 60 221-280 1-61 (63)
4 KOG0944 Ubiquitin-specific pro 99.3 3.7E-13 8.1E-18 145.2 3.2 64 215-278 176-250 (763)
5 KOG0804 Cytoplasmic Zn-finger 99.3 3.9E-11 8.6E-16 124.8 15.2 40 379-418 369-408 (493)
6 COG5207 UBP14 Isopeptidase T [ 99.2 4.4E-12 9.6E-17 133.3 3.1 62 217-278 172-243 (749)
7 smart00290 ZnF_UBP Ubiquitin C 99.1 4E-11 8.6E-16 90.1 2.3 49 220-268 1-49 (50)
8 cd02669 Peptidase_C19M A subfa 98.9 6.7E-10 1.5E-14 118.7 3.2 62 218-279 16-77 (440)
9 KOG1873 Ubiquitin-specific pro 98.8 1.5E-09 3.4E-14 118.7 1.3 88 189-276 45-143 (877)
10 PF13639 zf-RING_2: Ring finge 98.6 5.9E-09 1.3E-13 76.4 -0.3 41 169-210 2-44 (44)
11 PF15227 zf-C3HC4_4: zinc fing 98.4 4.8E-08 1.1E-12 71.3 0.5 36 170-209 1-42 (42)
12 KOG4628 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 93.2 2.8 56 168-224 230-288 (348)
13 PLN03208 E3 ubiquitin-protein 98.2 6.3E-07 1.4E-11 85.6 2.5 47 163-213 14-78 (193)
14 PHA02929 N1R/p28-like protein; 98.2 5.8E-07 1.3E-11 88.8 2.0 49 165-213 172-226 (238)
15 PF12678 zf-rbx1: RING-H2 zinc 98.2 6.6E-07 1.4E-11 72.9 1.3 44 167-210 19-73 (73)
16 PF13923 zf-C3HC4_2: Zinc fing 98.0 1.4E-06 3.1E-11 62.2 -0.3 37 170-209 1-39 (39)
17 KOG0823 Predicted E3 ubiquitin 97.9 3.3E-06 7.1E-11 82.3 1.0 45 165-213 45-94 (230)
18 PF13920 zf-C3HC4_3: Zinc fing 97.9 4.5E-06 9.7E-11 62.8 0.8 44 166-213 1-47 (50)
19 TIGR00599 rad18 DNA repair pro 97.9 4.9E-06 1.1E-10 87.8 1.3 48 162-213 21-70 (397)
20 PF14634 zf-RING_5: zinc-RING 97.8 6.9E-06 1.5E-10 60.3 1.6 42 169-211 1-44 (44)
21 PHA02926 zinc finger-like prot 97.8 5.1E-06 1.1E-10 80.6 0.8 48 165-213 168-229 (242)
22 KOG0317 Predicted E3 ubiquitin 97.8 6.1E-06 1.3E-10 82.6 1.4 45 165-213 237-283 (293)
23 PF00097 zf-C3HC4: Zinc finger 97.8 5.4E-06 1.2E-10 59.4 0.2 37 170-209 1-41 (41)
24 cd00162 RING RING-finger (Real 97.8 8.6E-06 1.9E-10 57.9 1.1 40 169-211 1-43 (45)
25 COG5540 RING-finger-containing 97.8 7.2E-06 1.6E-10 82.5 0.9 45 168-213 324-371 (374)
26 KOG2177 Predicted E3 ubiquitin 97.7 1.2E-05 2.5E-10 78.1 0.3 45 163-211 9-55 (386)
27 KOG0320 Predicted E3 ubiquitin 97.6 1.4E-05 3.1E-10 75.0 0.7 45 165-211 129-175 (187)
28 smart00504 Ubox Modified RING 97.6 2.5E-05 5.4E-10 60.8 1.7 42 168-213 2-45 (63)
29 smart00184 RING Ring finger. E 97.6 2.4E-05 5.2E-10 53.6 1.4 36 170-209 1-39 (39)
30 PF14835 zf-RING_6: zf-RING of 97.5 3.2E-05 7E-10 61.3 1.4 47 164-213 4-50 (65)
31 TIGR00570 cdk7 CDK-activating 97.5 0.0015 3.2E-08 66.9 13.6 47 167-213 3-53 (309)
32 PF13445 zf-RING_UBOX: RING-ty 97.4 2.8E-05 6E-10 57.2 -0.5 32 170-202 1-32 (43)
33 PF12861 zf-Apc11: Anaphase-pr 97.2 0.00012 2.6E-09 61.4 1.3 43 169-213 34-81 (85)
34 KOG0825 PHD Zn-finger protein 97.2 7E-05 1.5E-09 83.1 -0.1 96 166-278 122-264 (1134)
35 KOG2164 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 77.5 1.7 44 167-214 186-236 (513)
36 COG5432 RAD18 RING-finger-cont 97.1 0.00012 2.6E-09 73.5 0.1 49 161-213 19-69 (391)
37 PF14259 RRM_6: RNA recognitio 97.1 0.0023 5.1E-08 50.1 7.3 66 68-134 1-66 (70)
38 COG5574 PEX10 RING-finger-cont 97.0 0.0003 6.5E-09 70.0 1.7 45 165-213 213-261 (271)
39 KOG0287 Postreplication repair 97.0 0.0001 2.2E-09 75.4 -1.8 48 162-213 18-67 (442)
40 KOG0802 E3 ubiquitin ligase [P 96.9 0.00019 4.1E-09 79.2 -0.6 46 166-211 290-338 (543)
41 COG5243 HRD1 HRD ubiquitin lig 96.7 0.00041 8.9E-09 71.8 0.3 47 166-212 286-343 (491)
42 PF00076 RRM_1: RNA recognitio 96.6 0.0095 2E-07 45.9 7.4 66 68-134 1-66 (70)
43 PF04564 U-box: U-box domain; 96.6 0.00054 1.2E-08 55.7 -0.1 43 166-212 3-48 (73)
44 PF00038 Filament: Intermediat 96.4 0.23 5E-06 50.6 17.8 87 320-408 167-253 (312)
45 cd00590 RRM RRM (RNA recogniti 96.3 0.023 5.1E-07 43.0 7.7 66 68-134 2-67 (74)
46 KOG0978 E3 ubiquitin ligase in 96.1 0.0009 1.9E-08 74.9 -1.5 48 163-214 639-689 (698)
47 KOG1734 Predicted RING-contain 96.0 0.0023 4.9E-08 64.0 0.9 48 165-212 222-279 (328)
48 smart00362 RRM_2 RNA recogniti 95.8 0.038 8.2E-07 41.6 6.8 65 68-134 2-66 (72)
49 KOG0828 Predicted E3 ubiquitin 95.8 0.0019 4E-08 69.1 -1.0 47 166-212 570-632 (636)
50 KOG0824 Predicted E3 ubiquitin 95.8 0.004 8.7E-08 63.1 1.3 45 165-213 5-52 (324)
51 COG1579 Zn-ribbon protein, pos 95.6 0.92 2E-05 45.3 17.1 81 368-448 93-188 (239)
52 COG5194 APC11 Component of SCF 95.5 0.006 1.3E-07 50.5 1.2 46 168-213 32-80 (88)
53 smart00744 RINGv The RING-vari 95.4 0.0065 1.4E-07 45.9 1.1 40 169-210 1-49 (49)
54 COG5219 Uncharacterized conser 95.2 0.0026 5.7E-08 72.3 -2.3 47 166-212 1468-1521(1525)
55 KOG0827 Predicted E3 ubiquitin 95.1 0.0052 1.1E-07 64.1 -0.3 42 168-210 5-52 (465)
56 PF04059 RRM_2: RNA recognitio 95.1 0.13 2.8E-06 44.4 8.2 80 66-145 2-84 (97)
57 PF00038 Filament: Intermediat 95.1 1.3 2.8E-05 45.1 17.1 110 335-444 167-282 (312)
58 KOG1039 Predicted E3 ubiquitin 94.9 0.0086 1.9E-07 62.5 0.7 48 165-213 159-220 (344)
59 smart00360 RRM RNA recognition 94.8 0.11 2.3E-06 38.9 6.2 63 71-134 2-65 (71)
60 KOG0311 Predicted E3 ubiquitin 94.7 0.0021 4.5E-08 66.4 -4.5 47 163-212 39-88 (381)
61 PF11793 FANCL_C: FANCL C-term 94.5 0.012 2.5E-07 47.7 0.4 45 168-212 3-64 (70)
62 PF12325 TMF_TATA_bd: TATA ele 94.3 2.7 5.8E-05 37.8 14.8 42 398-439 67-111 (120)
63 KOG0297 TNF receptor-associate 94.2 0.03 6.5E-07 59.6 2.8 47 164-213 18-66 (391)
64 PF06785 UPF0242: Uncharacteri 93.4 2.4 5.2E-05 44.1 14.4 79 368-446 138-223 (401)
65 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.2 6.1 0.00013 35.6 16.8 64 372-442 67-130 (132)
66 PF11789 zf-Nse: Zinc-finger o 93.2 0.028 6.1E-07 43.8 0.3 41 165-208 9-53 (57)
67 PLN03134 glycine-rich RNA-bind 93.0 0.7 1.5E-05 42.4 9.3 71 63-134 32-103 (144)
68 PF07227 DUF1423: Protein of u 92.9 5.8 0.00013 42.9 17.0 14 191-211 123-136 (446)
69 KOG4159 Predicted E3 ubiquitin 92.6 0.043 9.3E-07 58.4 0.7 46 164-213 81-128 (398)
70 KOG1645 RING-finger-containing 92.3 0.044 9.6E-07 57.8 0.4 44 167-210 4-52 (463)
71 KOG0971 Microtubule-associated 92.1 5.9 0.00013 46.1 16.5 38 368-405 452-492 (1243)
72 COG1579 Zn-ribbon protein, pos 92.0 6.1 0.00013 39.6 14.9 28 323-354 14-41 (239)
73 KOG1493 Anaphase-promoting com 91.8 0.025 5.5E-07 46.5 -1.6 43 169-213 33-80 (84)
74 KOG0161 Myosin class II heavy 91.8 6.2 0.00014 49.8 17.7 109 336-444 1430-1546(1930)
75 KOG0982 Centrosomal protein Nu 91.3 9.6 0.00021 41.0 16.1 74 327-400 248-326 (502)
76 PF05883 Baculo_RING: Baculovi 91.2 0.043 9.3E-07 49.9 -1.0 35 167-202 26-66 (134)
77 PF10168 Nup88: Nuclear pore c 91.1 10 0.00022 43.7 17.6 24 419-442 641-664 (717)
78 PRK09039 hypothetical protein; 90.9 8.9 0.00019 40.3 15.7 26 321-351 80-105 (343)
79 PF11559 ADIP: Afadin- and alp 90.9 8 0.00017 35.4 13.7 58 377-434 93-150 (151)
80 PF07888 CALCOCO1: Calcium bin 90.9 16 0.00034 40.8 17.9 16 321-336 142-157 (546)
81 KOG4739 Uncharacterized protei 90.9 1.2 2.5E-05 44.3 8.5 42 169-212 5-46 (233)
82 KOG2879 Predicted E3 ubiquitin 90.8 0.17 3.7E-06 51.0 2.7 46 164-212 236-285 (298)
83 PF06005 DUF904: Protein of un 90.8 4.1 8.9E-05 33.3 10.2 43 369-411 23-65 (72)
84 COG5152 Uncharacterized conser 90.7 0.058 1.3E-06 52.0 -0.6 40 168-211 197-238 (259)
85 PF10212 TTKRSYEDQ: Predicted 90.7 6.2 0.00014 43.4 14.5 93 343-444 415-507 (518)
86 PF10367 Vps39_2: Vacuolar sor 90.6 0.16 3.4E-06 43.2 2.0 33 165-199 76-108 (109)
87 PF12718 Tropomyosin_1: Tropom 90.6 9.6 0.00021 35.1 13.8 12 424-435 129-140 (143)
88 PF10211 Ax_dynein_light: Axon 90.3 9.7 0.00021 36.6 14.1 22 420-441 166-187 (189)
89 KOG0971 Microtubule-associated 90.2 4.8 0.0001 46.8 13.5 40 373-412 398-437 (1243)
90 TIGR03825 FliH_bacil flagellar 90.1 8.5 0.00018 38.5 14.2 18 344-361 40-57 (255)
91 PF09726 Macoilin: Transmembra 90.0 7.1 0.00015 44.8 15.0 36 404-439 543-581 (697)
92 TIGR02449 conserved hypothetic 90.0 3.5 7.5E-05 33.2 8.9 46 373-418 2-47 (65)
93 KOG4445 Uncharacterized conser 89.8 0.047 1E-06 55.6 -2.2 36 165-201 113-148 (368)
94 KOG4367 Predicted Zn-finger pr 89.7 26 0.00057 37.9 17.6 32 165-200 2-33 (699)
95 KOG1941 Acetylcholine receptor 89.6 0.077 1.7E-06 55.7 -0.9 46 167-212 365-414 (518)
96 KOG0977 Nuclear envelope prote 89.4 2.8 6E-05 46.5 10.7 66 377-442 302-367 (546)
97 KOG0250 DNA repair protein RAD 89.4 15 0.00033 43.7 17.0 49 368-416 391-439 (1074)
98 PRK00409 recombination and DNA 89.4 11 0.00025 43.8 16.3 26 330-356 517-542 (782)
99 PF14662 CCDC155: Coiled-coil 89.2 22 0.00049 34.4 15.6 23 415-437 170-192 (193)
100 TIGR03752 conj_TIGR03752 integ 89.2 3.6 7.8E-05 44.8 11.2 75 368-442 63-141 (472)
101 PF07888 CALCOCO1: Calcium bin 88.8 17 0.00036 40.6 16.1 45 372-416 186-230 (546)
102 PF07798 DUF1640: Protein of u 88.7 22 0.00048 33.6 15.4 53 334-387 44-96 (177)
103 PF08317 Spc7: Spc7 kinetochor 88.7 14 0.0003 38.4 14.9 30 419-448 239-268 (325)
104 PF12718 Tropomyosin_1: Tropom 88.4 20 0.00044 32.9 14.9 49 368-416 39-90 (143)
105 PHA02562 46 endonuclease subun 88.2 31 0.00068 37.9 18.2 20 335-354 307-326 (562)
106 PF09731 Mitofilin: Mitochondr 88.2 24 0.00053 39.3 17.5 22 423-444 384-405 (582)
107 PRK09343 prefoldin subunit bet 88.0 19 0.00041 32.1 13.9 43 392-438 71-113 (121)
108 KOG1655 Protein involved in va 88.0 12 0.00026 36.3 12.7 98 336-439 35-141 (218)
109 PF08317 Spc7: Spc7 kinetochor 87.9 19 0.0004 37.4 15.3 18 424-441 251-268 (325)
110 KOG4848 Extracellular matrix-a 87.8 27 0.00059 33.9 14.8 66 322-389 99-164 (225)
111 KOG2114 Vacuolar assembly/sort 87.8 0.23 5E-06 56.8 1.2 42 166-211 839-880 (933)
112 PF10473 CENP-F_leu_zip: Leuci 87.7 23 0.00049 32.7 15.5 47 370-416 58-104 (140)
113 PRK12704 phosphodiesterase; Pr 87.6 23 0.0005 39.3 16.6 11 454-464 205-215 (520)
114 KOG1103 Predicted coiled-coil 87.4 4 8.6E-05 42.8 9.7 38 397-438 250-287 (561)
115 KOG2660 Locus-specific chromos 87.1 0.087 1.9E-06 54.3 -2.4 47 164-213 12-60 (331)
116 KOG3759 Uncharacterized RUN do 87.1 9.5 0.00021 41.4 12.5 42 401-442 204-245 (621)
117 PF13851 GAS: Growth-arrest sp 87.0 22 0.00047 34.6 14.2 26 322-347 9-34 (201)
118 PF09726 Macoilin: Transmembra 86.9 22 0.00047 41.0 16.2 60 379-439 588-658 (697)
119 KOG1813 Predicted E3 ubiquitin 86.9 0.28 6E-06 50.0 1.1 39 169-211 243-283 (313)
120 TIGR01069 mutS2 MutS2 family p 86.8 16 0.00035 42.5 15.4 30 325-355 507-536 (771)
121 KOG1940 Zn-finger protein [Gen 86.8 0.3 6.4E-06 49.7 1.3 43 169-211 160-204 (276)
122 PF14570 zf-RING_4: RING/Ubox 86.8 0.31 6.7E-06 36.8 1.0 43 170-212 1-46 (48)
123 COG5185 HEC1 Protein involved 86.7 24 0.00052 38.6 15.3 13 267-279 231-243 (622)
124 KOG3002 Zn finger protein [Gen 86.5 0.49 1.1E-05 48.7 2.7 108 162-282 43-188 (299)
125 PF10473 CENP-F_leu_zip: Leuci 86.4 27 0.00059 32.2 15.5 69 368-436 63-138 (140)
126 PF15070 GOLGA2L5: Putative go 86.3 38 0.00082 38.5 17.5 26 421-446 119-144 (617)
127 PF11932 DUF3450: Protein of u 86.2 25 0.00054 35.0 14.7 19 428-446 146-164 (251)
128 PF05700 BCAS2: Breast carcino 86.1 24 0.00053 34.6 14.2 47 391-437 160-209 (221)
129 COG3937 Uncharacterized conser 86.0 9.4 0.0002 33.6 9.9 16 422-437 88-103 (108)
130 KOG1785 Tyrosine kinase negati 85.9 0.24 5.3E-06 52.3 0.1 41 169-213 371-415 (563)
131 KOG3039 Uncharacterized conser 85.9 0.34 7.4E-06 48.3 1.1 46 166-211 220-267 (303)
132 COG4026 Uncharacterized protei 85.8 13 0.00029 36.8 11.9 35 378-412 142-176 (290)
133 COG3074 Uncharacterized protei 85.8 6.7 0.00015 32.0 8.2 38 371-408 32-69 (79)
134 PF04111 APG6: Autophagy prote 85.7 11 0.00023 39.2 12.0 14 341-354 23-36 (314)
135 KOG0995 Centromere-associated 85.6 32 0.0007 38.4 15.9 20 337-356 283-302 (581)
136 KOG0996 Structural maintenance 85.5 20 0.00044 43.0 15.1 79 371-449 942-1024(1293)
137 KOG2930 SCF ubiquitin ligase, 85.5 0.19 4.1E-06 43.7 -0.8 25 187-211 79-105 (114)
138 TIGR01659 sex-lethal sex-letha 85.4 4 8.8E-05 42.9 8.9 72 62-134 104-176 (346)
139 PRK10361 DNA recombination pro 85.3 24 0.00051 38.9 14.8 17 397-413 145-161 (475)
140 PF09731 Mitofilin: Mitochondr 85.3 63 0.0014 36.0 18.7 23 424-446 378-400 (582)
141 COG1196 Smc Chromosome segrega 85.3 38 0.00081 41.3 18.1 21 335-355 345-365 (1163)
142 KOG0964 Structural maintenance 85.2 11 0.00023 44.5 12.5 111 337-448 758-899 (1200)
143 COG5222 Uncharacterized conser 85.2 0.29 6.3E-06 49.9 0.3 41 168-211 275-318 (427)
144 KOG0579 Ste20-like serine/thre 84.9 35 0.00075 39.2 15.8 27 328-354 810-836 (1187)
145 TIGR03319 YmdA_YtgF conserved 84.8 40 0.00087 37.4 16.6 12 453-464 198-209 (514)
146 TIGR01661 ELAV_HUD_SF ELAV/HuD 84.6 5 0.00011 41.1 9.1 70 64-134 268-338 (352)
147 PF02403 Seryl_tRNA_N: Seryl-t 84.6 19 0.00041 31.0 11.3 67 370-440 35-104 (108)
148 PHA02562 46 endonuclease subun 84.5 30 0.00065 38.0 15.7 17 339-355 304-320 (562)
149 KOG4265 Predicted E3 ubiquitin 84.3 0.8 1.7E-05 47.9 3.0 43 167-213 290-335 (349)
150 PRK09039 hypothetical protein; 84.3 26 0.00056 36.8 14.3 41 397-437 142-185 (343)
151 PRK10884 SH3 domain-containing 84.3 16 0.00035 35.7 11.9 34 373-406 120-153 (206)
152 KOG2932 E3 ubiquitin ligase in 84.2 0.3 6.5E-06 50.1 -0.1 51 186-244 106-156 (389)
153 TIGR03007 pepcterm_ChnLen poly 84.1 19 0.0004 39.2 13.7 33 324-356 144-176 (498)
154 KOG3970 Predicted E3 ubiquitin 84.1 0.45 9.8E-06 46.8 1.0 46 165-212 48-103 (299)
155 PF11180 DUF2968: Protein of u 83.4 39 0.00084 32.8 13.7 30 326-355 97-126 (192)
156 PF10046 BLOC1_2: Biogenesis o 83.2 29 0.00062 29.8 12.5 65 367-435 31-98 (99)
157 KOG1002 Nucleotide excision re 83.2 0.21 4.6E-06 54.3 -1.8 43 165-211 534-583 (791)
158 KOG1962 B-cell receptor-associ 83.1 15 0.00034 36.2 11.1 17 331-347 86-102 (216)
159 KOG0288 WD40 repeat protein Ti 83.1 18 0.00038 38.9 12.2 20 368-387 45-64 (459)
160 PF05791 Bacillus_HBL: Bacillu 83.0 22 0.00047 34.0 12.0 88 343-438 90-177 (184)
161 PF04576 Zein-binding: Zein-bi 83.0 30 0.00065 29.9 13.6 25 334-358 3-27 (94)
162 KOG4005 Transcription factor X 82.9 23 0.00049 35.5 12.1 39 371-409 90-135 (292)
163 PF11932 DUF3450: Protein of u 82.8 23 0.0005 35.2 12.7 11 424-434 109-119 (251)
164 PRK00106 hypothetical protein; 82.7 56 0.0012 36.6 16.6 12 453-464 219-230 (535)
165 COG5175 MOT2 Transcriptional r 82.7 0.43 9.3E-06 49.5 0.3 47 166-212 13-62 (480)
166 KOG1952 Transcription factor N 82.5 0.48 1E-05 54.3 0.6 45 166-213 190-246 (950)
167 PF10226 DUF2216: Uncharacteri 82.5 28 0.0006 33.7 12.3 40 397-444 106-145 (195)
168 PF15233 SYCE1: Synaptonemal c 82.4 39 0.00085 30.8 12.7 68 372-442 35-114 (134)
169 KOG1571 Predicted E3 ubiquitin 82.3 0.74 1.6E-05 48.2 1.8 41 165-211 303-344 (355)
170 TIGR01622 SF-CC1 splicing fact 82.3 4.5 9.7E-05 43.2 7.9 69 65-134 186-255 (457)
171 PF15619 Lebercilin: Ciliary p 82.2 13 0.00028 36.1 10.2 16 421-436 93-108 (194)
172 KOG1029 Endocytic adaptor prot 81.9 23 0.0005 40.9 13.1 23 327-349 325-347 (1118)
173 PRK15422 septal ring assembly 81.9 11 0.00025 31.3 8.2 39 371-409 32-70 (79)
174 PRK10698 phage shock protein P 81.9 56 0.0012 32.2 14.8 67 373-441 94-160 (222)
175 PF06160 EzrA: Septation ring 81.5 73 0.0016 35.7 17.2 84 321-408 59-145 (560)
176 PF04641 Rtf2: Rtf2 RING-finge 81.5 0.71 1.5E-05 46.4 1.3 47 165-211 111-158 (260)
177 TIGR01069 mutS2 MutS2 family p 81.5 42 0.00091 39.2 15.7 14 342-355 509-522 (771)
178 TIGR01649 hnRNP-L_PTB hnRNP-L/ 81.4 9.8 0.00021 41.5 10.2 85 64-152 393-478 (481)
179 TIGR01622 SF-CC1 splicing fact 81.1 7.3 0.00016 41.6 9.0 70 63-134 87-157 (457)
180 KOG4443 Putative transcription 81.1 0.66 1.4E-05 51.8 1.0 47 166-213 17-72 (694)
181 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.0 42 0.00091 30.2 15.1 59 379-437 60-118 (132)
182 KOG4643 Uncharacterized coiled 80.9 75 0.0016 38.0 17.0 73 332-406 372-450 (1195)
183 KOG2002 TPR-containing nuclear 80.8 43 0.00093 39.7 15.2 23 427-449 875-897 (1018)
184 smart00787 Spc7 Spc7 kinetocho 80.8 72 0.0016 33.2 15.7 14 425-438 247-260 (312)
185 PF11068 YlqD: YlqD protein; 80.6 25 0.00054 32.1 10.8 37 422-461 65-101 (131)
186 PF09738 DUF2051: Double stran 80.4 24 0.00051 36.6 11.9 63 374-440 108-170 (302)
187 TIGR02338 gimC_beta prefoldin, 80.4 39 0.00084 29.4 12.8 39 395-437 70-108 (110)
188 COG2433 Uncharacterized conser 80.2 19 0.0004 40.5 11.6 53 80-141 67-120 (652)
189 KOG1853 LIS1-interacting prote 80.0 73 0.0016 32.4 14.6 25 424-448 164-188 (333)
190 PRK06231 F0F1 ATP synthase sub 79.9 62 0.0013 31.5 15.2 23 335-357 73-95 (205)
191 PF10168 Nup88: Nuclear pore c 79.8 62 0.0013 37.5 16.2 21 422-442 637-657 (717)
192 PF06705 SF-assemblin: SF-asse 79.5 67 0.0014 31.9 14.6 14 424-437 175-188 (247)
193 PF15254 CCDC14: Coiled-coil d 79.5 49 0.0011 38.4 14.7 44 392-436 502-548 (861)
194 smart00787 Spc7 Spc7 kinetocho 79.4 63 0.0014 33.6 14.8 29 420-448 235-263 (312)
195 KOG1001 Helicase-like transcri 79.4 0.79 1.7E-05 52.2 0.9 41 168-213 455-499 (674)
196 PRK14474 F0F1 ATP synthase sub 79.2 73 0.0016 31.9 16.1 20 421-440 113-132 (250)
197 TIGR02169 SMC_prok_A chromosom 79.2 90 0.0019 37.2 18.0 10 107-116 75-84 (1164)
198 COG3883 Uncharacterized protei 78.9 46 0.00099 33.9 13.1 15 393-407 92-106 (265)
199 PF12128 DUF3584: Protein of u 78.9 98 0.0021 38.0 18.4 35 81-117 57-91 (1201)
200 TIGR01628 PABP-1234 polyadenyl 78.8 6.7 0.00014 43.4 8.0 70 64-134 284-353 (562)
201 KOG0995 Centromere-associated 78.6 24 0.00053 39.3 11.9 41 368-408 284-324 (581)
202 KOG0161 Myosin class II heavy 78.1 86 0.0019 40.2 17.6 26 423-448 1012-1037(1930)
203 KOG0250 DNA repair protein RAD 78.1 1.5E+02 0.0033 35.7 18.6 37 320-356 659-697 (1074)
204 PF07058 Myosin_HC-like: Myosi 77.9 18 0.0004 37.4 10.0 64 369-432 5-74 (351)
205 TIGR01661 ELAV_HUD_SF ELAV/HuD 77.9 8.2 0.00018 39.5 7.8 69 65-134 3-72 (352)
206 PF09304 Cortex-I_coil: Cortex 77.8 38 0.00083 29.9 10.6 31 383-413 35-65 (107)
207 PF06632 XRCC4: DNA double-str 77.8 25 0.00054 37.1 11.3 14 374-387 161-174 (342)
208 KOG4593 Mitotic checkpoint pro 77.5 74 0.0016 36.5 15.3 25 424-448 275-299 (716)
209 PF15070 GOLGA2L5: Putative go 77.4 59 0.0013 37.0 14.9 13 424-436 160-172 (617)
210 PRK02224 chromosome segregatio 77.4 1.1E+02 0.0023 35.9 17.7 12 426-437 288-299 (880)
211 COG4026 Uncharacterized protei 77.2 29 0.00062 34.6 10.7 45 369-413 161-205 (290)
212 TIGR02132 phaR_Bmeg polyhydrox 77.2 71 0.0015 30.7 15.0 94 328-422 34-137 (189)
213 TIGR02894 DNA_bind_RsfA transc 77.1 43 0.00093 31.6 11.4 53 391-447 103-155 (161)
214 PRK04778 septation ring format 76.9 75 0.0016 35.6 15.6 67 321-391 63-132 (569)
215 KOG0976 Rho/Rac1-interacting s 76.8 48 0.001 38.6 13.6 16 423-438 350-365 (1265)
216 PF04012 PspA_IM30: PspA/IM30 76.5 76 0.0017 30.7 14.7 43 371-413 91-133 (221)
217 KOG0976 Rho/Rac1-interacting s 76.3 1E+02 0.0022 36.1 16.0 24 425-448 460-483 (1265)
218 KOG4172 Predicted E3 ubiquitin 76.2 0.37 8E-06 37.4 -1.9 42 168-213 8-53 (62)
219 PRK12705 hypothetical protein; 76.2 1.3E+02 0.0028 33.6 16.7 13 453-465 192-204 (508)
220 CHL00118 atpG ATP synthase CF0 76.1 65 0.0014 29.7 15.9 21 420-440 129-149 (156)
221 COG3074 Uncharacterized protei 75.3 44 0.00095 27.4 10.8 54 380-437 20-73 (79)
222 KOG3161 Predicted E3 ubiquitin 75.2 0.43 9.4E-06 53.1 -2.5 48 163-211 7-54 (861)
223 COG2433 Uncharacterized conser 75.0 23 0.0005 39.8 10.5 15 453-467 540-554 (652)
224 PRK08476 F0F1 ATP synthase sub 75.0 66 0.0014 29.3 14.9 16 418-433 119-134 (141)
225 PF09738 DUF2051: Double stran 75.0 58 0.0013 33.8 12.9 22 425-446 148-169 (302)
226 PF12325 TMF_TATA_bd: TATA ele 74.9 63 0.0014 29.0 13.9 20 337-356 26-45 (120)
227 TIGR01628 PABP-1234 polyadenyl 74.7 11 0.00024 41.7 8.2 69 64-133 177-245 (562)
228 PF14447 Prok-RING_4: Prokaryo 74.7 1.6 3.5E-05 33.9 1.2 29 185-213 21-49 (55)
229 PF06825 HSBP1: Heat shock fac 74.7 13 0.00028 28.8 6.2 35 405-439 16-50 (54)
230 TIGR01010 BexC_CtrB_KpsE polys 74.6 66 0.0014 33.6 13.6 55 336-390 165-233 (362)
231 PF00261 Tropomyosin: Tropomyo 73.9 96 0.0021 30.6 18.0 17 425-441 198-214 (237)
232 PRK11519 tyrosine kinase; Prov 73.7 1.8E+02 0.0039 33.6 19.2 33 324-356 250-282 (719)
233 PF06005 DUF904: Protein of un 73.7 48 0.0011 27.1 10.7 49 371-419 18-66 (72)
234 TIGR01648 hnRNP-R-Q heterogene 72.6 13 0.00028 41.9 8.1 71 62-133 55-125 (578)
235 PF10211 Ax_dynein_light: Axon 72.4 94 0.002 29.9 15.8 11 424-434 177-187 (189)
236 TIGR01659 sex-lethal sex-letha 72.4 15 0.00033 38.6 8.2 70 64-134 192-262 (346)
237 PF08614 ATG16: Autophagy prot 72.3 54 0.0012 31.4 11.4 46 369-414 121-166 (194)
238 TIGR03185 DNA_S_dndD DNA sulfu 71.9 45 0.00097 37.9 12.4 17 424-440 300-316 (650)
239 KOG1850 Myosin-like coiled-coi 71.9 1.4E+02 0.0029 31.5 16.0 108 335-448 216-337 (391)
240 KOG0163 Myosin class VI heavy 71.8 75 0.0016 37.0 13.5 98 325-433 892-989 (1259)
241 PF13863 DUF4200: Domain of un 71.8 69 0.0015 28.0 15.8 24 333-356 10-33 (126)
242 PF13893 RRM_5: RNA recognitio 71.7 9.7 0.00021 28.4 4.9 46 84-134 3-48 (56)
243 PF15066 CAGE1: Cancer-associa 71.7 1E+02 0.0022 33.9 14.0 23 426-448 435-457 (527)
244 PRK00409 recombination and DNA 71.6 42 0.0009 39.2 12.2 15 341-355 513-527 (782)
245 PRK04863 mukB cell division pr 71.6 1.3E+02 0.0028 37.9 16.9 33 322-354 233-267 (1486)
246 COG3883 Uncharacterized protei 71.5 48 0.001 33.8 11.1 44 371-414 52-95 (265)
247 PRK03918 chromosome segregatio 71.3 2.1E+02 0.0045 33.4 18.4 7 108-114 71-77 (880)
248 TIGR00606 rad50 rad50. This fa 71.2 1.8E+02 0.0039 36.0 18.1 14 321-334 828-841 (1311)
249 KOG0288 WD40 repeat protein Ti 71.0 1.1E+02 0.0023 33.2 13.9 41 334-387 31-71 (459)
250 TIGR00606 rad50 rad50. This fa 70.8 1.3E+02 0.0028 37.3 16.7 12 425-436 903-914 (1311)
251 PLN03120 nucleic acid binding 70.8 17 0.00037 36.8 7.8 66 65-134 4-69 (260)
252 PF12906 RINGv: RING-variant d 70.7 2.2 4.7E-05 31.9 1.0 38 170-209 1-47 (47)
253 PF00769 ERM: Ezrin/radixin/mo 70.6 1.1E+02 0.0024 30.7 13.5 68 371-438 40-117 (246)
254 KOG2398 Predicted proline-seri 70.5 1.8E+02 0.0039 33.2 16.4 34 322-355 57-90 (611)
255 KOG2026 Spindle pole body prot 70.4 4.7 0.0001 42.8 3.8 53 218-270 29-81 (442)
256 PF10267 Tmemb_cc2: Predicted 70.4 43 0.00093 36.0 11.1 62 377-441 257-318 (395)
257 PRK13428 F0F1 ATP synthase sub 70.3 1.7E+02 0.0037 31.9 16.1 19 422-440 110-128 (445)
258 PF04102 SlyX: SlyX; InterPro 70.2 27 0.00058 28.1 7.4 16 425-440 33-48 (69)
259 TIGR03321 alt_F1F0_F0_B altern 70.2 1.2E+02 0.0026 30.1 16.1 20 335-354 30-49 (246)
260 PRK13455 F0F1 ATP synthase sub 70.1 1E+02 0.0022 29.2 15.1 22 419-440 133-154 (184)
261 PRK02224 chromosome segregatio 70.1 2E+02 0.0042 33.7 17.5 7 108-114 68-74 (880)
262 KOG0996 Structural maintenance 70.1 2E+02 0.0044 35.1 17.0 17 425-441 441-457 (1293)
263 PRK06569 F0F1 ATP synthase sub 70.0 98 0.0021 29.1 15.8 19 427-447 124-142 (155)
264 PHA02825 LAP/PHD finger-like p 70.0 2.7 5.8E-05 39.5 1.7 45 164-213 5-58 (162)
265 PRK14890 putative Zn-ribbon RN 69.5 1.9 4.1E-05 34.0 0.5 32 205-240 27-58 (59)
266 KOG0994 Extracellular matrix g 69.4 1.6E+02 0.0034 36.1 15.7 28 416-443 1723-1750(1758)
267 KOG2391 Vacuolar sorting prote 69.4 81 0.0018 33.3 12.3 40 371-410 239-278 (365)
268 TIGR03185 DNA_S_dndD DNA sulfu 69.3 2.1E+02 0.0045 32.6 18.1 16 371-386 428-443 (650)
269 TIGR02231 conserved hypothetic 69.2 75 0.0016 35.0 13.1 14 423-436 151-164 (525)
270 KOG1814 Predicted E3 ubiquitin 69.1 1.9 4.1E-05 46.0 0.6 46 165-211 182-237 (445)
271 PF08581 Tup_N: Tup N-terminal 69.1 67 0.0014 26.8 11.0 33 401-433 41-73 (79)
272 COG4942 Membrane-bound metallo 69.0 59 0.0013 35.3 11.7 63 372-434 60-122 (420)
273 KOG0977 Nuclear envelope prote 68.9 98 0.0021 34.7 13.7 31 372-402 156-186 (546)
274 TIGR01642 U2AF_lg U2 snRNP aux 68.7 18 0.00039 39.1 8.1 69 65-134 295-364 (509)
275 PF01920 Prefoldin_2: Prefoldi 68.6 64 0.0014 27.1 9.9 40 392-435 62-101 (106)
276 PRK06568 F0F1 ATP synthase sub 68.2 1.1E+02 0.0023 28.8 15.5 25 418-442 109-133 (154)
277 KOG0963 Transcription factor/C 68.1 1.6E+02 0.0035 33.4 15.1 48 391-442 302-349 (629)
278 COG1196 Smc Chromosome segrega 68.0 2.7E+02 0.0059 34.0 18.5 10 117-126 554-563 (1163)
279 KOG0298 DEAD box-containing he 67.8 0.75 1.6E-05 54.9 -2.9 47 163-212 1149-1197(1394)
280 PF07106 TBPIP: Tat binding pr 67.8 47 0.001 30.9 9.7 24 323-347 73-96 (169)
281 KOG1853 LIS1-interacting prote 67.4 1.5E+02 0.0032 30.2 14.9 25 402-426 108-132 (333)
282 PRK04406 hypothetical protein; 67.3 52 0.0011 27.1 8.6 18 374-391 7-24 (75)
283 TIGR03545 conserved hypothetic 67.3 58 0.0013 36.6 11.7 79 335-413 169-258 (555)
284 TIGR01005 eps_transp_fam exopo 67.2 2.4E+02 0.0052 32.5 17.6 13 322-334 237-249 (754)
285 KOG2891 Surface glycoprotein [ 67.2 1.6E+02 0.0034 30.4 13.6 11 424-434 407-417 (445)
286 PF15466 DUF4635: Domain of un 67.1 10 0.00023 33.9 4.7 20 423-442 104-123 (135)
287 KOG4185 Predicted E3 ubiquitin 67.1 2.8 6E-05 42.5 1.3 46 167-213 3-54 (296)
288 KOG0982 Centrosomal protein Nu 66.9 1.1E+02 0.0025 33.2 13.1 19 321-339 247-266 (502)
289 PF14723 SSFA2_C: Sperm-specif 66.8 47 0.001 31.8 9.2 20 422-441 157-176 (179)
290 TIGR01649 hnRNP-L_PTB hnRNP-L/ 66.7 18 0.0004 39.4 7.6 64 66-133 97-160 (481)
291 KOG0994 Extracellular matrix g 66.6 1.7E+02 0.0037 35.8 15.3 28 20-47 590-617 (1758)
292 PLN03188 kinesin-12 family pro 66.5 1.3E+02 0.0028 37.0 14.7 33 335-367 1070-1104(1320)
293 COG2888 Predicted Zn-ribbon RN 66.5 2.4 5.2E-05 33.5 0.6 32 205-240 29-60 (61)
294 PF03961 DUF342: Protein of un 66.1 49 0.0011 35.8 10.7 10 77-86 25-34 (451)
295 PRK14475 F0F1 ATP synthase sub 66.1 1.1E+02 0.0025 28.4 15.1 21 335-355 35-55 (167)
296 KOG4362 Transcriptional regula 66.0 1.7 3.7E-05 49.2 -0.5 44 165-212 19-67 (684)
297 PRK13729 conjugal transfer pil 65.7 30 0.00064 38.0 8.8 12 422-433 109-120 (475)
298 PF07889 DUF1664: Protein of u 65.6 1E+02 0.0022 28.0 10.9 36 376-411 66-101 (126)
299 KOG2196 Nuclear porin [Nuclear 65.6 1.6E+02 0.0034 29.8 13.4 31 321-355 73-103 (254)
300 KOG4692 Predicted E3 ubiquitin 65.4 2.4 5.2E-05 44.4 0.5 45 165-213 420-466 (489)
301 PF09403 FadA: Adhesion protei 65.2 1.1E+02 0.0024 27.8 15.0 35 404-438 87-121 (126)
302 PRK04778 septation ring format 65.2 1.3E+02 0.0028 33.8 14.1 12 375-386 387-398 (569)
303 PF09789 DUF2353: Uncharacteri 65.1 67 0.0015 33.6 10.9 40 373-412 11-50 (319)
304 PLN02939 transferase, transfer 65.1 99 0.0021 37.1 13.4 47 371-418 324-370 (977)
305 KOG4673 Transcription factor T 64.9 2.5E+02 0.0054 32.5 15.7 9 434-442 640-648 (961)
306 PRK07352 F0F1 ATP synthase sub 64.8 1.2E+02 0.0027 28.3 16.1 22 335-356 44-65 (174)
307 PF07106 TBPIP: Tat binding pr 64.8 32 0.0007 32.1 7.9 73 372-444 87-165 (169)
308 PHA03096 p28-like protein; Pro 64.6 2.1 4.5E-05 43.9 -0.1 34 168-202 179-217 (284)
309 KOG4673 Transcription factor T 64.6 1.2E+02 0.0026 34.9 13.2 15 427-441 583-597 (961)
310 PRK09173 F0F1 ATP synthase sub 64.4 1.2E+02 0.0026 27.9 15.1 21 335-355 27-47 (159)
311 PF09730 BicD: Microtubule-ass 64.1 1.3E+02 0.0029 34.9 13.9 69 369-437 638-716 (717)
312 KOG0999 Microtubule-associated 64.0 1.4E+02 0.0031 33.6 13.4 19 321-340 49-67 (772)
313 KOG0612 Rho-associated, coiled 63.9 2E+02 0.0044 35.2 15.5 34 90-125 188-221 (1317)
314 KOG4438 Centromere-associated 63.9 2E+02 0.0043 31.3 14.2 21 388-408 219-239 (446)
315 KOG4807 F-actin binding protei 63.7 1.1E+02 0.0024 33.0 12.1 110 335-445 303-456 (593)
316 KOG3800 Predicted E3 ubiquitin 63.7 3.1 6.7E-05 42.5 0.9 43 169-211 2-48 (300)
317 PF04849 HAP1_N: HAP1 N-termin 63.4 1.9E+02 0.0042 30.1 14.7 25 424-448 276-301 (306)
318 PF00769 ERM: Ezrin/radixin/mo 63.3 1.6E+02 0.0035 29.4 13.1 7 377-383 60-66 (246)
319 PF03310 Cauli_DNA-bind: Cauli 62.7 43 0.00092 30.2 7.7 33 433-467 50-82 (121)
320 KOG0612 Rho-associated, coiled 62.4 1.5E+02 0.0032 36.4 14.0 23 64-87 228-252 (1317)
321 PF03962 Mnd1: Mnd1 family; I 62.4 68 0.0015 30.8 9.8 13 281-293 35-47 (188)
322 PRK11020 hypothetical protein; 62.4 74 0.0016 28.4 9.0 20 371-390 5-24 (118)
323 PF05701 WEMBL: Weak chloropla 62.3 2.6E+02 0.0056 31.1 16.5 17 338-354 208-224 (522)
324 TIGR02168 SMC_prok_B chromosom 62.3 3.3E+02 0.0072 32.4 18.7 6 287-292 644-649 (1179)
325 PHA02862 5L protein; Provision 62.1 3.1 6.7E-05 38.5 0.5 41 168-213 3-52 (156)
326 PRK13460 F0F1 ATP synthase sub 62.1 1.4E+02 0.003 28.0 16.0 21 420-440 123-143 (173)
327 PF15272 BBP1_C: Spindle pole 61.9 1.6E+02 0.0035 28.7 13.8 13 422-434 137-149 (196)
328 COG5293 Predicted ATPase [Gene 61.9 2.6E+02 0.0055 31.0 15.4 16 339-354 333-348 (591)
329 PF15233 SYCE1: Synaptonemal c 61.9 1.3E+02 0.0028 27.5 12.6 12 427-438 92-103 (134)
330 PRK05431 seryl-tRNA synthetase 61.8 44 0.00096 36.1 9.4 66 371-440 35-103 (425)
331 PF09744 Jnk-SapK_ap_N: JNK_SA 61.5 1.5E+02 0.0031 28.0 14.4 13 374-386 92-104 (158)
332 PF06156 DUF972: Protein of un 61.4 48 0.001 29.1 7.8 44 369-412 13-56 (107)
333 PRK12705 hypothetical protein; 61.3 2.7E+02 0.0059 31.1 15.7 10 337-346 23-32 (508)
334 PRK02119 hypothetical protein; 61.3 63 0.0014 26.4 8.0 16 375-390 6-21 (73)
335 KOG4674 Uncharacterized conser 61.0 1.8E+02 0.004 37.1 15.1 32 407-438 806-837 (1822)
336 PRK04863 mukB cell division pr 60.8 3.6E+02 0.0078 34.2 17.7 9 267-275 215-223 (1486)
337 PF10212 TTKRSYEDQ: Predicted 60.7 2.8E+02 0.006 31.0 16.0 27 329-355 415-441 (518)
338 PF10234 Cluap1: Clusterin-ass 60.6 1.3E+02 0.0028 30.8 11.8 26 365-390 163-188 (267)
339 PRK13454 F0F1 ATP synthase sub 60.6 1.6E+02 0.0034 28.0 15.9 20 421-440 139-158 (181)
340 KOG0993 Rab5 GTPase effector R 60.6 1.5E+02 0.0033 32.1 12.6 48 373-420 136-183 (542)
341 PRK04325 hypothetical protein; 60.4 71 0.0015 26.1 8.2 16 375-390 6-21 (74)
342 PF05715 zf-piccolo: Piccolo Z 60.4 6.1 0.00013 31.2 1.8 9 229-237 48-56 (61)
343 CHL00019 atpF ATP synthase CF0 60.2 1.6E+02 0.0034 27.9 16.1 22 335-356 49-70 (184)
344 PRK05759 F0F1 ATP synthase sub 60.0 1.4E+02 0.003 27.2 15.2 19 422-440 113-131 (156)
345 KOG0826 Predicted E3 ubiquitin 59.9 3.1 6.7E-05 43.2 0.1 44 166-212 299-344 (357)
346 PF05377 FlaC_arch: Flagella a 59.7 35 0.00077 26.6 5.9 18 424-441 28-45 (55)
347 PF09730 BicD: Microtubule-ass 59.7 1.5E+02 0.0032 34.5 13.3 53 386-439 98-150 (717)
348 PF04912 Dynamitin: Dynamitin 59.7 1.6E+02 0.0034 31.4 12.9 41 396-436 347-387 (388)
349 KOG1867 Ubiquitin-specific pro 59.6 4 8.8E-05 44.9 1.0 60 219-280 44-105 (492)
350 PF09602 PhaP_Bmeg: Polyhydrox 59.6 1E+02 0.0022 29.3 10.1 19 396-414 82-100 (165)
351 PF00638 Ran_BP1: RanBP1 domai 59.5 21 0.00046 31.2 5.4 100 22-128 10-117 (122)
352 PRK00846 hypothetical protein; 59.4 1E+02 0.0022 25.6 9.0 19 372-390 7-25 (77)
353 PRK00295 hypothetical protein; 59.3 74 0.0016 25.6 8.0 14 377-390 4-17 (68)
354 TIGR00414 serS seryl-tRNA synt 59.3 53 0.0012 35.4 9.4 22 419-440 85-106 (418)
355 PLN02320 seryl-tRNA synthetase 59.2 89 0.0019 34.7 11.1 67 370-440 99-167 (502)
356 PRK02793 phi X174 lysis protei 59.1 75 0.0016 25.9 8.1 14 425-438 37-50 (72)
357 PF07851 TMPIT: TMPIT-like pro 58.9 90 0.002 32.8 10.6 6 456-461 94-99 (330)
358 PF06785 UPF0242: Uncharacteri 58.8 1.7E+02 0.0038 30.9 12.4 30 389-418 138-167 (401)
359 PF09304 Cortex-I_coil: Cortex 58.8 1.3E+02 0.0028 26.6 12.2 17 426-442 60-76 (107)
360 KOG0239 Kinesin (KAR3 subfamil 58.7 2.3E+02 0.0051 32.7 14.7 77 370-446 240-322 (670)
361 PF10046 BLOC1_2: Biogenesis o 58.4 1.2E+02 0.0026 26.0 10.9 54 386-440 36-89 (99)
362 KOG0993 Rab5 GTPase effector R 58.4 2.2E+02 0.0049 30.9 13.3 24 373-396 109-132 (542)
363 smart00502 BBC B-Box C-termina 58.3 1.2E+02 0.0025 25.8 14.0 13 424-436 79-91 (127)
364 PLN02678 seryl-tRNA synthetase 58.2 57 0.0012 35.7 9.4 22 419-440 87-108 (448)
365 KOG0933 Structural maintenance 58.2 4.1E+02 0.0089 32.2 16.9 14 321-334 683-696 (1174)
366 KOG2077 JNK/SAPK-associated pr 57.7 75 0.0016 35.8 10.0 130 320-461 299-446 (832)
367 PF09728 Taxilin: Myosin-like 57.5 2.4E+02 0.0052 29.3 18.4 28 320-347 20-47 (309)
368 PHA00626 hypothetical protein 57.5 6.5 0.00014 30.8 1.5 32 205-240 2-33 (59)
369 cd07666 BAR_SNX7 The Bin/Amphi 57.5 2.2E+02 0.0047 28.7 16.5 85 324-414 115-199 (243)
370 PF11802 CENP-K: Centromere-as 57.3 2.3E+02 0.005 29.0 12.9 49 391-441 130-178 (268)
371 PF05130 FlgN: FlgN protein; 57.2 1.3E+02 0.0028 26.0 10.8 24 335-358 6-29 (143)
372 KOG3859 Septins (P-loop GTPase 57.2 1.5E+02 0.0032 31.0 11.4 42 397-438 357-398 (406)
373 PRK10361 DNA recombination pro 56.8 2.9E+02 0.0064 30.6 14.5 19 424-442 140-158 (475)
374 PF07139 DUF1387: Protein of u 56.6 86 0.0019 32.6 9.8 16 419-434 238-253 (302)
375 KOG3915 Transcription regulato 56.5 1.5E+02 0.0032 32.7 11.8 25 87-111 228-256 (641)
376 PF12777 MT: Microtubule-bindi 56.4 2.5E+02 0.0054 29.4 13.6 14 335-348 199-212 (344)
377 cd07600 BAR_Gvp36 The Bin/Amph 56.1 2.3E+02 0.0049 28.5 12.7 23 426-448 207-229 (242)
378 COG4372 Uncharacterized protei 56.0 3E+02 0.0064 29.8 14.7 36 370-405 143-178 (499)
379 KOG1705 Uncharacterized conser 56.0 6.4 0.00014 33.7 1.3 39 203-241 27-66 (110)
380 PRK09174 F0F1 ATP synthase sub 55.9 2E+02 0.0044 27.9 16.1 21 335-355 78-98 (204)
381 PF08172 CASP_C: CASP C termin 55.8 72 0.0016 32.1 9.0 60 373-436 1-119 (248)
382 PRK10929 putative mechanosensi 55.8 2.2E+02 0.0047 34.9 14.4 12 426-437 335-346 (1109)
383 PF06810 Phage_GP20: Phage min 55.8 1.1E+02 0.0024 28.5 9.7 12 397-408 56-67 (155)
384 PF04899 MbeD_MobD: MbeD/MobD 55.7 1.1E+02 0.0024 25.0 8.4 18 395-412 17-34 (70)
385 KOG0825 PHD Zn-finger protein 55.7 3.8 8.3E-05 46.9 -0.0 50 165-214 94-154 (1134)
386 PF09755 DUF2046: Uncharacteri 55.5 2.7E+02 0.0058 29.2 19.2 32 319-351 24-55 (310)
387 KOG4360 Uncharacterized coiled 55.3 2E+02 0.0044 32.0 12.7 103 347-449 188-301 (596)
388 KOG0933 Structural maintenance 55.1 4.5E+02 0.0097 31.9 16.1 21 112-132 529-549 (1174)
389 PF14644 DUF4456: Domain of un 55.1 2.1E+02 0.0045 27.8 16.1 32 324-355 27-58 (208)
390 PF05911 DUF869: Plant protein 55.0 1.8E+02 0.004 34.1 13.2 89 338-435 600-691 (769)
391 PF15450 DUF4631: Domain of un 54.9 1.9E+02 0.004 32.3 12.5 99 335-433 370-490 (531)
392 PRK08476 F0F1 ATP synthase sub 54.9 1.7E+02 0.0036 26.6 14.0 19 422-440 116-134 (141)
393 COG4717 Uncharacterized conser 54.8 2.8E+02 0.0061 32.9 14.3 105 338-442 568-722 (984)
394 PF03467 Smg4_UPF3: Smg-4/UPF3 54.7 16 0.00035 34.7 4.0 84 66-153 8-97 (176)
395 PF00435 Spectrin: Spectrin re 54.7 1.1E+02 0.0024 24.4 10.6 61 370-430 40-104 (105)
396 cd00890 Prefoldin Prefoldin is 54.6 1.4E+02 0.0031 25.8 13.2 17 338-354 3-19 (129)
397 PLN03121 nucleic acid binding 54.6 49 0.0011 33.3 7.5 67 64-134 4-70 (243)
398 COG5185 HEC1 Protein involved 54.6 1.7E+02 0.0038 32.3 12.0 13 90-102 91-103 (622)
399 TIGR02894 DNA_bind_RsfA transc 54.4 76 0.0017 30.0 8.3 48 375-422 101-148 (161)
400 PF06548 Kinesin-related: Kine 54.3 3.3E+02 0.0072 29.9 15.2 52 332-383 297-356 (488)
401 KOG4307 RNA binding protein RB 54.2 25 0.00055 40.1 5.9 69 65-134 867-936 (944)
402 PF00261 Tropomyosin: Tropomyo 54.0 2.3E+02 0.005 28.0 16.4 26 321-346 91-116 (237)
403 PRK08475 F0F1 ATP synthase sub 53.9 1.9E+02 0.0042 27.0 15.5 22 335-356 47-68 (167)
404 KOG0980 Actin-binding protein 53.9 4.5E+02 0.0098 31.3 17.7 26 326-351 390-417 (980)
405 PRK13453 F0F1 ATP synthase sub 53.8 1.9E+02 0.0042 27.1 16.0 21 420-440 125-145 (173)
406 PF03961 DUF342: Protein of un 53.7 98 0.0021 33.6 10.4 18 424-441 389-406 (451)
407 KOG4005 Transcription factor X 53.5 1.2E+02 0.0025 30.7 9.7 37 377-413 89-125 (292)
408 TIGR01642 U2AF_lg U2 snRNP aux 53.4 31 0.00066 37.4 6.5 66 63-134 173-249 (509)
409 PRK14472 F0F1 ATP synthase sub 53.3 2E+02 0.0042 27.0 15.2 21 335-355 43-63 (175)
410 PRK14559 putative protein seri 53.3 12 0.00025 42.8 3.3 49 169-228 3-51 (645)
411 PF14197 Cep57_CLD_2: Centroso 53.2 1.2E+02 0.0026 24.5 10.1 36 371-406 5-40 (69)
412 TIGR02680 conserved hypothetic 53.1 4.3E+02 0.0093 33.1 16.7 20 326-345 251-270 (1353)
413 PF02841 GBP_C: Guanylate-bind 52.9 2.7E+02 0.0058 28.4 14.3 13 424-436 284-296 (297)
414 KOG1100 Predicted E3 ubiquitin 52.7 8.2 0.00018 37.8 1.8 37 170-212 161-198 (207)
415 PRK00286 xseA exodeoxyribonucl 52.7 3.3E+02 0.0071 29.3 16.3 58 76-133 5-69 (438)
416 PF14335 DUF4391: Domain of un 52.4 57 0.0012 31.9 7.6 33 368-400 179-211 (221)
417 KOG2307 Low density lipoprotei 52.4 3.3E+02 0.0071 30.9 13.8 26 424-449 127-152 (705)
418 TIGR01648 hnRNP-R-Q heterogene 52.4 39 0.00085 38.1 7.2 64 64-134 232-296 (578)
419 KOG2129 Uncharacterized conser 52.4 3.5E+02 0.0075 29.6 15.7 13 340-352 153-165 (552)
420 PF14282 FlxA: FlxA-like prote 52.3 31 0.00068 30.1 5.2 21 420-440 54-74 (106)
421 TIGR03752 conj_TIGR03752 integ 52.1 1.2E+02 0.0026 33.4 10.5 43 392-438 102-144 (472)
422 COG0419 SbcC ATPase involved i 52.0 4.5E+02 0.0098 31.2 16.2 7 108-114 72-78 (908)
423 KOG3268 Predicted E3 ubiquitin 52.0 5.2 0.00011 38.3 0.2 46 166-211 164-225 (234)
424 PRK14473 F0F1 ATP synthase sub 51.8 2E+02 0.0043 26.6 16.0 23 419-441 114-136 (164)
425 PF05266 DUF724: Protein of un 51.7 2.3E+02 0.005 27.4 12.8 15 266-280 8-22 (190)
426 KOG1029 Endocytic adaptor prot 51.5 2.6E+02 0.0057 32.8 13.2 16 337-352 327-342 (1118)
427 PF05837 CENP-H: Centromere pr 51.5 1.5E+02 0.0032 25.8 9.3 35 370-404 9-43 (106)
428 PRK00736 hypothetical protein; 51.5 1.2E+02 0.0025 24.5 7.9 14 425-438 34-47 (68)
429 smart00160 RanBD Ran-binding d 51.2 16 0.00035 32.9 3.3 109 13-128 10-128 (130)
430 PRK07353 F0F1 ATP synthase sub 51.1 1.8E+02 0.0039 25.9 16.0 20 421-440 113-132 (140)
431 KOG0972 Huntingtin interacting 51.1 2.4E+02 0.0051 29.4 11.7 16 337-352 230-245 (384)
432 KOG0742 AAA+-type ATPase [Post 51.0 3.8E+02 0.0083 29.6 16.2 14 343-356 116-129 (630)
433 KOG0239 Kinesin (KAR3 subfamil 51.0 4.5E+02 0.0097 30.4 15.9 18 337-354 189-206 (670)
434 KOG1265 Phospholipase C [Lipid 51.0 5.1E+02 0.011 31.1 17.9 15 109-123 648-662 (1189)
435 PF09744 Jnk-SapK_ap_N: JNK_SA 50.9 2.2E+02 0.0047 26.8 13.7 9 433-441 144-152 (158)
436 PHA03161 hypothetical protein; 50.7 1.8E+02 0.0039 27.3 9.9 6 426-431 98-103 (150)
437 COG5236 Uncharacterized conser 50.3 5.5 0.00012 41.7 0.1 44 165-212 59-106 (493)
438 PF15369 KIAA1328: Uncharacter 50.1 99 0.0022 32.4 9.1 46 373-421 10-55 (328)
439 KOG3091 Nuclear pore complex, 50.0 1.4E+02 0.0031 32.9 10.6 14 370-383 382-395 (508)
440 cd07593 BAR_MUG137_fungi The B 49.9 2.7E+02 0.0058 27.5 13.9 20 430-449 177-196 (215)
441 PF08614 ATG16: Autophagy prot 49.9 1.7E+02 0.0036 28.0 10.2 18 421-438 162-179 (194)
442 PRK00888 ftsB cell division pr 49.8 64 0.0014 28.2 6.7 7 455-461 78-84 (105)
443 PRK13461 F0F1 ATP synthase sub 49.6 2.1E+02 0.0046 26.2 16.1 21 420-440 112-132 (159)
444 PF14446 Prok-RING_1: Prokaryo 49.4 12 0.00025 29.1 1.7 34 166-199 4-37 (54)
445 TIGR02231 conserved hypothetic 49.0 1.5E+02 0.0033 32.7 11.1 16 425-440 146-161 (525)
446 PF15254 CCDC14: Coiled-coil d 48.6 5.1E+02 0.011 30.5 15.0 16 337-352 397-412 (861)
447 PF07544 Med9: RNA polymerase 48.4 52 0.0011 27.4 5.7 42 370-415 27-68 (83)
448 PF10146 zf-C4H2: Zinc finger- 48.3 2.9E+02 0.0063 27.5 15.6 18 372-389 33-50 (230)
449 KOG1962 B-cell receptor-associ 48.2 1.7E+02 0.0037 29.0 10.1 10 425-434 201-210 (216)
450 PF05852 DUF848: Gammaherpesvi 48.2 2.2E+02 0.0047 26.6 10.1 19 423-441 95-113 (146)
451 PF12761 End3: Actin cytoskele 48.0 1.4E+02 0.003 29.2 9.2 22 423-444 166-187 (195)
452 KOG0979 Structural maintenance 47.5 4.3E+02 0.0093 31.9 14.5 71 59-130 50-139 (1072)
453 KOG4674 Uncharacterized conser 47.5 3.2E+02 0.007 35.1 14.2 48 371-418 668-715 (1822)
454 KOG1003 Actin filament-coating 47.5 2.3E+02 0.0051 27.7 10.6 81 347-436 94-177 (205)
455 COG5374 Uncharacterized conser 47.4 2.6E+02 0.0056 27.1 10.7 38 372-409 137-174 (192)
456 PF12329 TMF_DNA_bd: TATA elem 47.4 1.6E+02 0.0034 24.1 10.4 12 373-384 14-25 (74)
457 KOG4275 Predicted E3 ubiquitin 47.2 6.5 0.00014 40.4 0.1 41 166-212 299-340 (350)
458 PF02601 Exonuc_VII_L: Exonucl 47.2 3.3E+02 0.0072 27.8 15.8 21 66-86 15-35 (319)
459 PTZ00464 SNF-7-like protein; P 47.1 2.9E+02 0.0063 27.2 15.4 14 425-438 125-138 (211)
460 PF07889 DUF1664: Protein of u 47.0 2.1E+02 0.0045 26.0 9.7 17 339-355 59-75 (126)
461 KOG2807 RNA polymerase II tran 46.9 2E+02 0.0043 30.4 10.6 120 65-211 165-298 (378)
462 KOG0122 Translation initiation 46.9 1E+02 0.0023 31.2 8.3 79 64-152 188-267 (270)
463 KOG0243 Kinesin-like protein [ 46.9 2.8E+02 0.0061 33.6 13.0 85 363-447 440-527 (1041)
464 KOG1295 Nonsense-mediated deca 46.8 13 0.00028 39.4 2.2 65 68-132 10-77 (376)
465 COG0724 RNA-binding proteins ( 46.7 78 0.0017 29.4 7.4 69 65-134 115-184 (306)
466 KOG4643 Uncharacterized coiled 46.7 6.2E+02 0.013 30.8 16.0 14 339-352 389-402 (1195)
467 KOG0117 Heterogeneous nuclear 46.6 86 0.0019 34.3 8.2 76 62-138 80-156 (506)
468 TIGR02977 phageshock_pspA phag 46.5 2.9E+02 0.0063 26.9 12.5 93 344-436 30-125 (219)
469 KOG0992 Uncharacterized conser 46.4 3E+02 0.0066 30.7 12.3 15 374-388 77-91 (613)
470 cd00729 rubredoxin_SM Rubredox 46.3 9.4 0.0002 26.6 0.8 13 230-242 2-14 (34)
471 PF01442 Apolipoprotein: Apoli 46.0 2.3E+02 0.005 25.7 13.8 115 320-437 17-131 (202)
472 PF04849 HAP1_N: HAP1 N-termin 45.9 3.7E+02 0.0081 28.1 13.9 59 374-436 244-302 (306)
473 PF04642 DUF601: Protein of un 45.8 1.6E+02 0.0035 29.9 9.4 40 397-436 257-297 (311)
474 PF13094 CENP-Q: CENP-Q, a CEN 45.6 2.2E+02 0.0048 26.2 10.1 12 423-434 121-132 (160)
475 KOG1265 Phospholipase C [Lipid 45.6 6.2E+02 0.013 30.5 16.0 20 391-410 1123-1142(1189)
476 PF05529 Bap31: B-cell recepto 45.5 1.5E+02 0.0033 28.0 9.2 16 333-348 92-107 (192)
477 PF10498 IFT57: Intra-flagella 45.4 4E+02 0.0088 28.3 14.1 96 343-445 219-315 (359)
478 PF14942 Muted: Organelle biog 45.2 2.6E+02 0.0055 26.0 13.6 36 401-436 106-141 (145)
479 cd00632 Prefoldin_beta Prefold 45.2 2E+02 0.0043 24.7 12.5 17 396-412 67-83 (105)
480 KOG1937 Uncharacterized conser 45.2 3.6E+02 0.0077 29.8 12.5 33 371-403 345-377 (521)
481 PRK13729 conjugal transfer pil 44.8 1E+02 0.0022 33.9 8.7 58 361-418 66-123 (475)
482 PRK04023 DNA polymerase II lar 44.8 20 0.00044 42.6 3.5 54 183-238 618-671 (1121)
483 KOG2034 Vacuolar sorting prote 44.7 7.6 0.00016 45.2 0.2 33 164-198 814-846 (911)
484 KOG4460 Nuclear pore complex, 44.7 5.2E+02 0.011 29.3 14.9 109 336-445 568-683 (741)
485 PF04880 NUDE_C: NUDE protein, 44.7 36 0.00078 32.3 4.6 54 373-448 2-55 (166)
486 PF10422 LRS4: Monopolin compl 44.7 15 0.00031 37.0 2.1 91 337-434 10-114 (249)
487 PF15294 Leu_zip: Leucine zipp 44.6 1.6E+02 0.0035 30.2 9.6 73 369-441 130-207 (278)
488 PF12773 DZR: Double zinc ribb 44.6 25 0.00054 25.9 2.9 46 170-237 1-50 (50)
489 KOG0962 DNA repair protein RAD 44.5 4.7E+02 0.01 32.5 14.6 109 333-442 998-1113(1294)
490 PLN03188 kinesin-12 family pro 44.5 6.7E+02 0.014 31.3 15.7 106 327-436 1112-1237(1320)
491 PF07352 Phage_Mu_Gam: Bacteri 44.5 1.4E+02 0.0031 27.3 8.6 56 380-435 2-57 (149)
492 PRK01156 chromosome segregatio 44.5 5.9E+02 0.013 30.0 17.3 137 302-441 453-597 (895)
493 PLN03229 acetyl-coenzyme A car 44.4 2E+02 0.0043 33.6 11.1 96 348-447 462-581 (762)
494 PF10243 MIP-T3: Microtubule-b 44.3 7.5 0.00016 43.2 0.0 112 333-444 395-515 (539)
495 KOG4360 Uncharacterized coiled 44.2 5.1E+02 0.011 29.1 14.6 102 330-431 194-300 (596)
496 PRK11281 hypothetical protein; 44.0 5.2E+02 0.011 31.8 15.1 98 332-434 218-330 (1113)
497 cd00176 SPEC Spectrin repeats, 43.9 2.5E+02 0.0054 25.4 11.2 78 367-444 36-117 (213)
498 PF03962 Mnd1: Mnd1 family; I 43.9 1.7E+02 0.0036 28.2 9.2 71 370-445 61-131 (188)
499 PF07111 HCR: Alpha helical co 43.9 5E+02 0.011 30.2 14.0 91 335-436 561-651 (739)
500 COG5082 AIR1 Arginine methyltr 43.8 32 0.00069 33.3 4.2 93 166-279 59-165 (190)
No 1
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=100.00 E-value=2.6e-127 Score=977.63 Aligned_cols=460 Identities=47% Similarity=0.841 Sum_probs=405.0
Q ss_pred CceEEEee---cCCCCcccc-ccccceeecCCC---cccccCCCCceeeeeeeEEEccCCCCCcCCCCCCCCcEEEEecc
Q 011525 1 MFVLRVHS---VDDNHPITI-EEAGFCTVSSTA---TRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAV 73 (484)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~-~~~~~~~~~s~~---~~~~~~gnp~v~~~~g~~hl~r~~~~~~~~~~~~~~~~l~il~v 73 (484)
||+.++++ +++..+++. .+.-++...|.. ++.|+||||.|++|+|||||||.++.++++.+.. ++|||||||
T Consensus 4 v~~e~~~~~~~~~ssr~i~~r~~d~g~~~~s~~~~~~~~~~sgnp~ve~t~GiiHLyk~n~~~s~~~~~~-~~mLcilaV 82 (493)
T KOG0804|consen 4 VIIESLVSEPLVDSSREISGRSEDSGFTSASERLPSQIKYSSGNPSVEETHGIIHLYKKNSHSSLKNASS-STMLCILAV 82 (493)
T ss_pred chhhhcccCcccccccccCCcccccccchhhhccCCcccccCCCCceeeeceeEEEEecCcccccccCCC-CcEEEEEec
Confidence 45677887 899998888 444477877776 3359999999999999999999999888776643 999999999
Q ss_pred CCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCCCcccceeeEEEeEEEEeec
Q 011525 74 PNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTEL 153 (484)
Q Consensus 74 P~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle~e~C~~v~v~~v~~~~~ 153 (484)
|+|||++|||+|+++++.+|++||||| |++||||||||||+++.+|+.||..|||++||++||++||++||.+|+|+.+
T Consensus 83 P~~mt~~Dll~F~~~~~~~I~~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s 161 (493)
T KOG0804|consen 83 PAYMTSHDLLRFCASFIKQISDIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTES 161 (493)
T ss_pred cccccHHHHHHHHHHHhhhhheeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEec
Confidence 999999999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccccccc--CCCCccCCCCCCCcee
Q 011525 154 AEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQ--DERPTCSVCGTVENLW 231 (484)
Q Consensus 154 ~~~~~~~~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~~--~~~~~C~~C~~~~nlW 231 (484)
.+++..++.+++|+|||||||||||++++||+++.|+|+||++|+.+|.+++||||||++.+ .+...|.+|+.++|||
T Consensus 162 ~d~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~Lw 241 (493)
T KOG0804|consen 162 EDGASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLW 241 (493)
T ss_pred ccCCCCCCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEE
Confidence 99999999999999999999999999999999999999999999999999999999999862 1568899999999999
Q ss_pred eccccccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhhhhhhhccccCceeeccCCCCCcCCCCCCcccCC
Q 011525 232 VCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSE 311 (484)
Q Consensus 232 iCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~Vhrl~q~k~dgklve~~~~~~~~~~~~~~~e~~~ 311 (484)
+||+||++|||||..|||++||++|+|+|+|+|+|+|||||+||+|||||+++++|||+|+....+.+..
T Consensus 242 icliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~~~---------- 311 (493)
T KOG0804|consen 242 ICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDDSR---------- 311 (493)
T ss_pred EEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEecccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999987653321
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHH-hhhcccHHHHHHHHHH
Q 011525 312 DSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAE-------------------AKS-KRESLIPETVEKAVAS 371 (484)
Q Consensus 312 ~~~~~~~~~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~-------------------~~~-~~~~~~~~~~~~~~~~ 371 (484)
..+.+.+.++|+.||+||||+||.|||+.+.+ +.+ +.+....++.++.++.
T Consensus 312 ---------~~~~~~~~~~~s~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~ 382 (493)
T KOG0804|consen 312 ---------KDDCDSLELEYSPLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVER 382 (493)
T ss_pred ---------ccCcceEEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 12334444555555555555555555554444 433 3333344556667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHHhhccCC
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTD 451 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~~~~~ 451 (484)
++++++.+++++.+|+++++++|+.|++||..|+.+++++++++++++..+|++|+||+|||||||||||+|+||+ ++
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk--~d 460 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK--SD 460 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 34
Q ss_pred CCCccCcEEeecCCCCCCCCCccCCCCcCCCC
Q 011525 452 SDGIKGGTVLPVSYQQSSPTNTRRHKKSSRRK 483 (484)
Q Consensus 452 ~~ei~~G~v~~~~~~~~~~~~~~~~kk~~~~~ 483 (484)
.+||++|||++++...+++++.+++||+|||+
T Consensus 461 t~eIqegtI~~~~~s~~~~~~~~~kkk~nrrk 492 (493)
T KOG0804|consen 461 TDEIQEGTILITQISPSSSSSVKSKKKSNRRK 492 (493)
T ss_pred hhhhcCceeeccCCCCCccccccchhhhcccC
Confidence 56999999998877666666667777777776
No 2
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=99.97 E-value=2.7e-30 Score=225.53 Aligned_cols=105 Identities=43% Similarity=0.748 Sum_probs=94.2
Q ss_pred CcCCCCCCCCcEEEEeccCCCCChhHHHHhh-cccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 56 SYQQNPNSRSTCIFVVAVPNYLSSDEFVRFC-GSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 56 ~~~~~~~~~~~~l~il~vP~~~~~~d~l~F~-~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++..++.+++++||||+||+||++.|+|.|+ +++.+.|+|+|||| |++||||||||||+++.+|++||..|||++||+
T Consensus 3 ~~~~~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir-d~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 3 SESDLPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR-DGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CccCCCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEee-CCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3456677889999999999999999988766 55699999999999 678999999999999999999999999999999
Q ss_pred CcccceeeEEEeEEEEeecccccCCCC
Q 011525 135 AEAEVCHMLFMLSVEYTELAEIASTPP 161 (484)
Q Consensus 135 le~e~C~~v~v~~v~~~~~~~~~~~~~ 161 (484)
||+|+||+|||++|+|+...+.+..++
T Consensus 82 lEpE~ChvvfV~~Ve~~~~~~~~~~~~ 108 (110)
T PF07576_consen 82 LEPETCHVVFVKSVEFTSSAEGASSPP 108 (110)
T ss_pred CCCceeEEEEEEEEEEEcccccccCCC
Confidence 999999999999999999877665544
No 3
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.63 E-value=2.9e-17 Score=129.97 Aligned_cols=60 Identities=55% Similarity=1.242 Sum_probs=52.9
Q ss_pred cCCCCCC-CceeeccccccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhhhh
Q 011525 221 CSVCGTV-ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (484)
Q Consensus 221 C~~C~~~-~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~Vhr 280 (484)
|.+|+.. .++|+||.||++|||++.++||..|+++++|++++++.+..||||.|++||+.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~ 61 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD 61 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence 6778877 79999999999999999999999999999999999999999999999999863
No 4
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-13 Score=145.20 Aligned_cols=64 Identities=41% Similarity=0.854 Sum_probs=59.5
Q ss_pred cCCCCccCCCCCCCceeeccccccccccCCC------CCccccccCCCCCceeeeCCC-----ceeEeeccchhh
Q 011525 215 QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 278 (484)
Q Consensus 215 ~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~~------~~HA~~H~~~t~H~~~l~l~t-----~~Vwcy~cd~~V 278 (484)
++.+++|..|++++|||+||+||.|||||.+ +|||..||.+|+||+++.|+| ..||||.||..|
T Consensus 176 ~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v 250 (763)
T KOG0944|consen 176 PPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEV 250 (763)
T ss_pred CCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccc
Confidence 4678999999999999999999999999973 899999999999999999865 899999999988
No 5
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.30 E-value=3.9e-11 Score=124.83 Aligned_cols=40 Identities=25% Similarity=0.159 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 379 ELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 379 ~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
+...++.+++.++..-..|+..++.|.++++.++|..+.+
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433444455555655555554444433
No 6
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.4e-12 Score=133.34 Aligned_cols=62 Identities=44% Similarity=0.954 Sum_probs=56.5
Q ss_pred CCCccCCCCCCCceeeccccccccccCCC-----CCccccccCCCCCceeeeCC-----CceeEeeccchhh
Q 011525 217 ERPTCSVCGTVENLWVCLICGFVGCGRYK-----EGHAVRHWKDTQHWYSLDLR-----TQQIWDYVGDNYV 278 (484)
Q Consensus 217 ~~~~C~~C~~~~nlWiCL~CG~vGCgr~~-----~~HA~~H~~~t~H~~~l~l~-----t~~Vwcy~cd~~V 278 (484)
...+|..|++..|||+||.||++||||-+ +|||..||.+|+||+++.|. +..+|||.||..+
T Consensus 172 ~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~ 243 (749)
T COG5207 172 GGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEI 243 (749)
T ss_pred CCceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCccc
Confidence 46799999999999999999999999964 79999999999999998874 5899999999875
No 7
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.09 E-value=4e-11 Score=90.13 Aligned_cols=49 Identities=59% Similarity=1.236 Sum_probs=45.9
Q ss_pred ccCCCCCCCceeeccccccccccCCCCCccccccCCCCCceeeeCCCce
Q 011525 220 TCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQ 268 (484)
Q Consensus 220 ~C~~C~~~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~ 268 (484)
+|..|+...++|+||.||++||+++..+|+..|+.+++|++++++.++.
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 4889998889999999999999999999999999999999999998765
No 8
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.89 E-value=6.7e-10 Score=118.72 Aligned_cols=62 Identities=29% Similarity=0.422 Sum_probs=58.2
Q ss_pred CCccCCCCCCCceeeccccccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhhh
Q 011525 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279 (484)
Q Consensus 218 ~~~C~~C~~~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~Vh 279 (484)
.-.|.+|....|+|+||+||.++||++.++||..|+.+++|++++++.|+.||||.|+.||-
T Consensus 16 e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~ 77 (440)
T cd02669 16 EKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEII 77 (440)
T ss_pred cccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEe
Confidence 34699999999999999999888888899999999999999999999999999999999983
No 9
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-09 Score=118.73 Aligned_cols=88 Identities=25% Similarity=0.571 Sum_probs=61.9
Q ss_pred CCCcccccccccc-------CCccccccccccccCCCCccCCCCCCCceeeccccccccccC-CCCCccccccCCC---C
Q 011525 189 CDHSFQCSCTAKW-------TVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGR-YKEGHAVRHWKDT---Q 257 (484)
Q Consensus 189 C~H~Fh~~Cl~~w-------~~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vGCgr-~~~~HA~~H~~~t---~ 257 (484)
|.|.-+.--+.+. .+..|..|.........---..=.....+|+||.||+.|||| ....||+.||... .
T Consensus 45 C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~ 124 (877)
T KOG1873|consen 45 CQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEP 124 (877)
T ss_pred cchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCeeeCCCcccchhhhhhcccCCCC
Confidence 8886654433332 145788886543211110000111234699999999999999 6789999999875 6
Q ss_pred CceeeeCCCceeEeeccch
Q 011525 258 HWYSLDLRTQQIWDYVGDN 276 (484)
Q Consensus 258 H~~~l~l~t~~Vwcy~cd~ 276 (484)
||+.+++.++.+|||.||.
T Consensus 125 Hclvin~~n~~~WCy~Cd~ 143 (877)
T KOG1873|consen 125 HCLVINLINWLIWCYSCDA 143 (877)
T ss_pred eeEEEEeeeeeeEEEeccc
Confidence 9999999999999999998
No 10
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.62 E-value=5.9e-09 Score=76.37 Aligned_cols=41 Identities=41% Similarity=1.008 Sum_probs=34.9
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC--Cccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCR 210 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR 210 (484)
.||||++.+... ..++.++|+|.||..|+..|. ..+||+||
T Consensus 2 ~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG-EKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT-SCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCC-CeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 699999999764 556788899999999999995 67999997
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.43 E-value=4.8e-08 Score=71.33 Aligned_cols=36 Identities=42% Similarity=0.914 Sum_probs=27.6
Q ss_pred CccccCCcCCCCCCceeecCCCcccccccccc-C-----Ccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKW-T-----VLSCQVC 209 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w-~-----~~~CPvC 209 (484)
||||++.|.+| ++++|||+||..|+..| . ...||.|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 99999999999999964 3 1468887
No 12
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.1e-07 Score=93.20 Aligned_cols=56 Identities=27% Similarity=0.577 Sum_probs=44.1
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccccC--C-ccccccccccccCCCCccCCC
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--V-LSCQVCRFCHQQDERPTCSVC 224 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~-~~CPvCR~~~~~~~~~~C~~C 224 (484)
.+|.||||.+... ..+..+||+|.||+.|++.|. . ..||+|+.-...+....+..+
T Consensus 230 ~~CaIClEdY~~G-dklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e 288 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-DKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE 288 (348)
T ss_pred ceEEEeecccccC-CeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccC
Confidence 4999999999986 556679999999999999995 3 569999975544444455555
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.21 E-value=6.3e-07 Score=85.61 Aligned_cols=47 Identities=32% Similarity=0.670 Sum_probs=39.2
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC------------------Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------------------VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~------------------~~~CPvCR~~~ 213 (484)
...+...||||++.+.++ +.++|+|.||..|+..|. ...||+||...
T Consensus 14 ~~~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred cCCCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 345678999999999888 678999999999999983 24799999754
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.20 E-value=5.8e-07 Score=88.82 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=38.1
Q ss_pred CCCCcCccccCCcCCCCCC----ceeecCCCccccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSG----ILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~g----ivt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.....||||++.+.++... .+.++|+|.||..|+..|. ..+||+||...
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 3467999999987654211 2456899999999999995 67999999754
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.16 E-value=6.6e-07 Score=72.94 Aligned_cols=44 Identities=32% Similarity=0.763 Sum_probs=33.8
Q ss_pred CCcCccccCCcCCCC---------CCceeecCCCccccccccccC--Cccccccc
Q 011525 167 LPTCPICLERLDPDT---------SGILSTICDHSFQCSCTAKWT--VLSCQVCR 210 (484)
Q Consensus 167 ~ptCpICLe~l~~~~---------~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR 210 (484)
...|+||++.|.++. ..+...+|+|.||..||.+|. ..+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 445999999995542 234556899999999999995 57999997
No 16
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.96 E-value=1.4e-06 Score=62.17 Aligned_cols=37 Identities=43% Similarity=0.975 Sum_probs=30.4
Q ss_pred CccccCCcCCCCCCceeecCCCccccccccccC--Ccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVC 209 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvC 209 (484)
||||++.+.++ ++.++|||.||..|+.+|. ...||+|
T Consensus 1 C~iC~~~~~~~---~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP---VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE---EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc---CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999886 4678999999999999883 6789987
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.3e-06 Score=82.26 Aligned_cols=45 Identities=29% Similarity=0.678 Sum_probs=39.1
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC-----Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-----~~~CPvCR~~~ 213 (484)
.....|-||||.-.+| +.+.|||.||..||.+|. ...||||+...
T Consensus 45 ~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 4567999999999999 888999999999999995 35789999754
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.86 E-value=4.5e-06 Score=62.76 Aligned_cols=44 Identities=30% Similarity=0.601 Sum_probs=35.7
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCc-ccccccccc--CCcccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKW--TVLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w--~~~~CPvCR~~~ 213 (484)
|...|+||++..... +.++|||. ||..|...| ....||+||...
T Consensus 1 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 1 EDEECPICFENPRDV----VLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp -HSB-TTTSSSBSSE----EEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred CcCCCccCCccCCce----EEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 356899999987764 88899999 999999988 478999999753
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=4.9e-06 Score=87.79 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=40.6
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+.....|+||++.|..| +.++|+|.||..|+..|. ...||+|+...
T Consensus 21 ~~Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred cccccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 3456788999999999988 678999999999999764 45799999754
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.85 E-value=6.9e-06 Score=60.31 Aligned_cols=42 Identities=31% Similarity=0.672 Sum_probs=35.0
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~ 211 (484)
.|++|++.+.+ ......++|||.||..|+..+. ...||+||.
T Consensus 1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999933 3446788999999999999887 789999974
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=97.83 E-value=5.1e-06 Score=80.65 Aligned_cols=48 Identities=29% Similarity=0.656 Sum_probs=36.3
Q ss_pred CCCCcCccccCCcCCC------CCCceeecCCCccccccccccCC--------cccccccccc
Q 011525 165 TELPTCPICLERLDPD------TSGILSTICDHSFQCSCTAKWTV--------LSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~------~~givt~~C~H~Fh~~Cl~~w~~--------~~CPvCR~~~ 213 (484)
...-+|+||+|..-.. .-| +..+|+|.||..|+..|.. .+||+||...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFG-IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFG-LLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCcccccccccccccccc-ccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3568999999986432 113 4568999999999999963 2499999754
No 22
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.1e-06 Score=82.64 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=39.5
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
...+.|.+|||-...| ..+||||-||..|+..|. ...||+||...
T Consensus 237 ~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 3458999999999888 688999999999999995 56799999865
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.79 E-value=5.4e-06 Score=59.44 Aligned_cols=37 Identities=41% Similarity=1.038 Sum_probs=31.5
Q ss_pred CccccCCcCCCCCCceeecCCCccccccccccC----Ccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVC 209 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~----~~~CPvC 209 (484)
||||++.+..+. ..++|+|.||..|+.+|. ...||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999882 489999999999999873 4678887
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.77 E-value=8.6e-06 Score=57.91 Aligned_cols=40 Identities=40% Similarity=0.947 Sum_probs=32.2
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 211 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~ 211 (484)
+|+||++.+..+ +...+|+|.||..|+..|. ...||+|+.
T Consensus 1 ~C~iC~~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhCc---eEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence 599999999544 2455699999999999884 457999986
No 25
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=7.2e-06 Score=82.50 Aligned_cols=45 Identities=31% Similarity=0.775 Sum_probs=38.0
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
-.|.||++-+-.. ..++.+||+|.||..|+.+|- ...||+||...
T Consensus 324 veCaICms~fiK~-d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKN-DRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhccc-ceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 5899999988543 447899999999999999995 46899999865
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.2e-05 Score=78.11 Aligned_cols=45 Identities=40% Similarity=0.716 Sum_probs=39.3
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~ 211 (484)
.+.+..+||||++.|..| ..++|+|+||..|+..+. ...||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 456889999999999998 788999999999999654 378999993
No 27
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.4e-05 Score=75.00 Aligned_cols=45 Identities=31% Similarity=0.672 Sum_probs=36.9
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccccc--CCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 211 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR~ 211 (484)
.....|||||+.+..-+ ++.+.|||.||..|+... ....||+|++
T Consensus 129 ~~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~k 175 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRK 175 (187)
T ss_pred ccccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCccc
Confidence 45679999999998652 367899999999999854 3678999995
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.62 E-value=2.5e-05 Score=60.78 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=36.6
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..||||++.|.+| +.++|||+|+..|+.+|- ...||+|+...
T Consensus 2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 4799999999998 788999999999999873 66899998643
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.61 E-value=2.4e-05 Score=53.61 Aligned_cols=36 Identities=44% Similarity=1.063 Sum_probs=29.9
Q ss_pred CccccCCcCCCCCCceeecCCCccccccccccC---Ccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVC 209 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvC 209 (484)
|+||++....+ +.++|+|.||..|+..|. ...||+|
T Consensus 1 C~iC~~~~~~~----~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP----VVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc----EEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 89999985554 788999999999999883 4668887
No 30
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.54 E-value=3.2e-05 Score=61.32 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=26.9
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
+.++..|++|.+.|..|+ .+..|.|.||..|+..-..+.||+|....
T Consensus 4 le~lLrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHHTTS-SSS-S--SS-B------SSS--B-TTTGGGGTTTB-SSS--B-
T ss_pred HHHhcCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcCCCCCCcCChH
Confidence 356889999999999992 36799999999999876667899998753
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.0015 Score=66.93 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=32.6
Q ss_pred CCcCccccCC-cCCCCCCceeecCCCccccccccc-cC--Ccccccccccc
Q 011525 167 LPTCPICLER-LDPDTSGILSTICDHSFQCSCTAK-WT--VLSCQVCRFCH 213 (484)
Q Consensus 167 ~ptCpICLe~-l~~~~~givt~~C~H~Fh~~Cl~~-w~--~~~CPvCR~~~ 213 (484)
...||+|... +..|..-.+..+|||+||.+|+.. |. ...||+|+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~l 53 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPL 53 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCcc
Confidence 4689999973 333322222338999999999996 64 45799997643
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.41 E-value=2.8e-05 Score=57.22 Aligned_cols=32 Identities=31% Similarity=0.717 Sum_probs=19.7
Q ss_pred CccccCCcCCCCCCceeecCCCccccccccccC
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~ 202 (484)
||||.| +..+..-.+.++|||+|+..|+.++.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~ 32 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLS 32 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHH
Confidence 999999 87744444788999999999999863
No 33
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.23 E-value=0.00012 Score=61.37 Aligned_cols=43 Identities=30% Similarity=0.652 Sum_probs=29.7
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC-----Ccccccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 213 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-----~~~CPvCR~~~ 213 (484)
+||.|...-++ -.++.-.|+|.||..||.+|. ...||.||..-
T Consensus 34 ~Cp~Ck~Pgd~--Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 34 CCPDCKFPGDD--CPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCccCCCCC--CceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 44555443332 234556799999999999994 35899999753
No 34
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.23 E-value=7e-05 Score=83.13 Aligned_cols=96 Identities=24% Similarity=0.449 Sum_probs=66.3
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccccc----------------------------
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQQ---------------------------- 215 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~~~---------------------------- 215 (484)
..-.||+||..+.+... +-..+|+|-||..|+..|. ...||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~ 200 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKG 200 (1134)
T ss_pred hhhhhhHHHHHHHHHhh-ccccccccccHHHHhhhhhhhcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhc
Confidence 34589999977665411 1256899999999999996 5689999975420
Q ss_pred ------------CCCCccCCCCCCC---ceeeccccccccccCCCCCccccccCCCCCceeeeCC--CceeEeeccchhh
Q 011525 216 ------------DERPTCSVCGTVE---NLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLR--TQQIWDYVGDNYV 278 (484)
Q Consensus 216 ------------~~~~~C~~C~~~~---nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~--t~~Vwcy~cd~~V 278 (484)
.+...|..|+.++ -|.+|-.|.... -|.|+|+.. .-.+--+.|++++
T Consensus 201 ~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~----------------YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 201 GDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVY----------------YHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccccccccCcccccccceeeccCChHHhheeecccccce----------------eeccccCcccccccccceecCcch
Confidence 1236899999987 377888777742 277777753 2334455677666
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00016 Score=77.55 Aligned_cols=44 Identities=36% Similarity=0.762 Sum_probs=35.9
Q ss_pred CCcCccccCCcCCCCCCceeecCCCccccccccc-cC------Cccccccccccc
Q 011525 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT------VLSCQVCRFCHQ 214 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~-w~------~~~CPvCR~~~~ 214 (484)
...|||||+.-..+ +.+.|||.||+.||-+ |. ...||+||....
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 78999999988777 5556999999999984 63 468999997653
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.11 E-value=0.00012 Score=73.46 Aligned_cols=49 Identities=29% Similarity=0.541 Sum_probs=41.4
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+|--...|-||-++|..| +.++|||+||.-||..+. +..||+||...
T Consensus 19 L~~LDs~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhcchhHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 33455677999999999999 788999999999999763 78999999754
No 37
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.08 E-value=0.0023 Score=50.15 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=54.9
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|=++|..+|..||..|+..+ ..|..++++++..-..+-.+++.|.+.+.|..+...++|..|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 5788999999999999999998 46999999996433457789999999999999999999877653
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0003 Score=69.97 Aligned_cols=45 Identities=33% Similarity=0.574 Sum_probs=38.3
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccc-cC---Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~-w~---~~~CPvCR~~~ 213 (484)
...-.|++|++....+ ..++|||.||..||-. |. ..-||+||.-.
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 3466899999999988 7899999999999997 95 34599999754
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.98 E-value=0.0001 Score=75.38 Aligned_cols=48 Identities=27% Similarity=0.611 Sum_probs=41.5
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+-.+..|-||.|.|..| +.++|+|+||.-||..+. ...||.|+..+
T Consensus 18 k~lD~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred hhhHHHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 3456788999999999999 778899999999999764 67899999865
No 40
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00019 Score=79.16 Aligned_cols=46 Identities=33% Similarity=0.658 Sum_probs=37.9
Q ss_pred CCCcCccccCCcCCCCC-CceeecCCCccccccccccC--Ccccccccc
Q 011525 166 ELPTCPICLERLDPDTS-GILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~-givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~ 211 (484)
....|+||+|.|..+.. ....++|+|.||..|+..|- ..+||.||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 37799999999987311 12578999999999999994 789999998
No 41
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00041 Score=71.79 Aligned_cols=47 Identities=23% Similarity=0.573 Sum_probs=36.9
Q ss_pred CCCcCccccCCcCCCCC---------CceeecCCCccccccccccC--Cccccccccc
Q 011525 166 ELPTCPICLERLDPDTS---------GILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~---------givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~ 212 (484)
.+.+|.||.|.|-.+.. ..-.+||||-||..|+..|- ..+||+||.+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCc
Confidence 56799999998533311 11358999999999999994 7899999986
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.64 E-value=0.0095 Score=45.92 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=56.4
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|-++|..+|..||..+++. ...|..+.+.++.....+-.+.+.|.+..+|+.....+||..|+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 578899999999999999988 556688999986434456788999999999999999999987764
No 43
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.58 E-value=0.00054 Score=55.68 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC---Cccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~ 212 (484)
+...|||+.+.|.+| +.+++||+|.+.|+.+|. +..||+|+..
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~ 48 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQP 48 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCc
Confidence 356899999999999 888999999999999993 6789999753
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.39 E-value=0.23 Score=50.59 Aligned_cols=87 Identities=14% Similarity=0.337 Sum_probs=53.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
....+..|..+|...+..-.+.=-.+|..++.++.......- .++. .+...+..+...+..+..+...++..|..|..
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~-~~~~-~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS-EELE-SAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc-cccc-hhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 356677888999999988888888899999988875443211 1111 23344455555555666665555555655555
Q ss_pred HHHHHHHHH
Q 011525 400 NQEIMRKKF 408 (484)
Q Consensus 400 nq~~~~~~~ 408 (484)
....+...+
T Consensus 245 ~l~~le~~~ 253 (312)
T PF00038_consen 245 QLRELEQRL 253 (312)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555444433
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.30 E-value=0.023 Score=43.00 Aligned_cols=66 Identities=18% Similarity=0.378 Sum_probs=56.7
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|-++|..++..|+.+|++.+ ..|..+.+.++.....+-.+.+.|.+...|......+++..|+.
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 6788999999999999999887 77889999985432336689999999999999999999988765
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0009 Score=74.88 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=40.9
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCcccccccccc---CCccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFCHQ 214 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~~~~ 214 (484)
.+.+..+||+|-.+..+. +.+.|+|.||-.|+... ....||.|-..++
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HHHhceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 356889999999998876 77899999999999953 4789999988774
No 47
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0023 Score=63.97 Aligned_cols=48 Identities=21% Similarity=0.581 Sum_probs=39.1
Q ss_pred CCCCcCccccCCcCCCC--C----CceeecCCCccccccccccC----Cccccccccc
Q 011525 165 TELPTCPICLERLDPDT--S----GILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~--~----givt~~C~H~Fh~~Cl~~w~----~~~CPvCR~~ 212 (484)
-++.-|.||-..++.++ . .+-++.|+|+||-.|+.-|- ...||.|+.-
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHH
Confidence 46788999999998764 2 34478999999999999993 5789999864
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=95.82 E-value=0.038 Score=41.57 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=54.1
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|-++|..++..|+.+|+..+- .|..+++.++.+ .++-.+++.|.+...|+.....++|..|+.
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g-~v~~~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFG-PIESVKIPKDTG-KSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcC-CEEEEEEecCCC-CCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 67889999999999999997654 577899988653 235578999999999999999999987754
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0019 Score=69.11 Aligned_cols=47 Identities=32% Similarity=0.752 Sum_probs=36.0
Q ss_pred CCCcCccccCCcCCCCC-------------CceeecCCCccccccccccCC---ccccccccc
Q 011525 166 ELPTCPICLERLDPDTS-------------GILSTICDHSFQCSCTAKWTV---LSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~-------------givt~~C~H~Fh~~Cl~~w~~---~~CPvCR~~ 212 (484)
.--.|+||....+--.+ .++.+||.|.||..|+.+|-+ ..||+||..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~p 632 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCP 632 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCC
Confidence 45589999987654322 245679999999999999953 489999964
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.004 Score=63.14 Aligned_cols=45 Identities=29% Similarity=0.526 Sum_probs=38.1
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccc--ccCC-cccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA--KWTV-LSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~--~w~~-~~CPvCR~~~ 213 (484)
.-.+.|+||+....-| +.+.|+|.||..||. .|.+ ..|++||...
T Consensus 5 ~~~~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pi 52 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPI 52 (324)
T ss_pred ccCCcceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCCceecCCC
Confidence 3467899999999988 789999999999998 4765 4599999864
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.57 E-value=0.92 Score=45.29 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATIL--------------DLEEQI 433 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~--------------eL~EQv 433 (484)
++...++.++.++..|+.+...+...-+.|.++++.++.++..++..........+.++. .|.+.+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555555555544444555555555555554444433333333333333 333322
Q ss_pred -HhHHHhhhhHHHhhc
Q 011525 434 -RDLTVYIEAQKTLTN 448 (484)
Q Consensus 434 -rDLmf~leaq~ki~~ 448 (484)
.+|.++.+.+.+=++
T Consensus 173 ~~ell~~yeri~~~~k 188 (239)
T COG1579 173 DPELLSEYERIRKNKK 188 (239)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 567777777666553
No 52
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.50 E-value=0.006 Score=50.48 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=32.7
Q ss_pred CcCccccCCcCCCCCC-ceeecCCCccccccccccC--Ccccccccccc
Q 011525 168 PTCPICLERLDPDTSG-ILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 168 ptCpICLe~l~~~~~g-ivt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+||-|.-.+++...- ++--.|+|.||..|+.+|. ...||++|...
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 4677777665443222 2334899999999999996 45799998754
No 53
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.43 E-value=0.0065 Score=45.87 Aligned_cols=40 Identities=23% Similarity=0.715 Sum_probs=29.4
Q ss_pred cCccccCCcCCCCCCceeecCC-----CccccccccccC----Cccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWT----VLSCQVCR 210 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~-----H~Fh~~Cl~~w~----~~~CPvCR 210 (484)
.|-||++ .+. ....+..||. +.+|..|+.+|. ..+||+|.
T Consensus 1 ~CrIC~~-~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889998 222 2445667885 779999999994 45799984
No 54
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.19 E-value=0.0026 Score=72.29 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=34.2
Q ss_pred CCCcCccccCCcCCCCCCc---eeecCCCccccccccccC----Cccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGI---LSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~gi---vt~~C~H~Fh~~Cl~~w~----~~~CPvCR~~ 212 (484)
..-.|+||...++...... .-..|.|.||..|+.+|- .+.||+||..
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRse 1521 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccc
Confidence 3457999988777321111 234689999999999993 6789999963
No 55
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.0052 Score=64.14 Aligned_cols=42 Identities=26% Similarity=0.809 Sum_probs=30.3
Q ss_pred CcCccccCCcCCCCCCceee-cCCCccccccccccC----C-ccccccc
Q 011525 168 PTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT----V-LSCQVCR 210 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~----~-~~CPvCR 210 (484)
..|.||.+.++.. ..+-.+ .|||.||..|+..|- + ..||.|+
T Consensus 5 A~C~Ic~d~~p~~-~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPND-HELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccc-cccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 3699996666544 223333 499999999999994 2 4788887
No 56
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.09 E-value=0.13 Score=44.44 Aligned_cols=80 Identities=16% Similarity=0.408 Sum_probs=59.4
Q ss_pred cEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC--CCCcceEEEEEecChhcHHHHHhhhcCCcCCCCcc-cceee
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEA-EVCHM 142 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~--~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle~-e~C~~ 142 (484)
|+|=|=.||..+|..+|+..+.+....-=.+-.++-| ..-|.--+-|-|.+...|..|+..|+|++.+.... -+|.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6788889999999999999996653322222222222 22366678899999999999999999999986644 48887
Q ss_pred EEE
Q 011525 143 LFM 145 (484)
Q Consensus 143 v~v 145 (484)
.|.
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 653
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.08 E-value=1.3 Score=45.11 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~------~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~ 408 (484)
|+..|..-|..|+..+.....+.+......++. .....+..+..++..+......+..--..|......+...+
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 677777777778877776665444322222210 11222333334444444444333333334444455566667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHH
Q 011525 409 KEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 409 ~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ 444 (484)
.+++.+........+..|.+|+.+|.++-.-+..|.
T Consensus 247 ~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 247 RELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 777766666666667778888877777766665543
No 58
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.0086 Score=62.50 Aligned_cols=48 Identities=35% Similarity=0.800 Sum_probs=38.4
Q ss_pred CCCCcCccccCCcCCCC-----CCceeecCCCccccccccccC---------Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDT-----SGILSTICDHSFQCSCTAKWT---------VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~-----~givt~~C~H~Fh~~Cl~~w~---------~~~CPvCR~~~ 213 (484)
...-.|.||+|...+.. -|| .++|.|.||..|+.+|. ..+||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgi-lpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGI-LPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhccc-CCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45779999999887764 232 35799999999999996 47899999753
No 59
>smart00360 RRM RNA recognition motif.
Probab=94.76 E-value=0.11 Score=38.86 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=50.9
Q ss_pred eccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 71 VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 71 l~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
-++|..++..|+.+|+.++ ..|..++|.++.. ..++-.+++.|.+...|......+++..|+.
T Consensus 2 ~~l~~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 2 GNLPPDVTEEELRELFSKF-GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCcccCHHHHHHHHHhh-CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 3689999999999999765 3678888888532 2346689999999999999999999887754
No 60
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.0021 Score=66.38 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=38.1
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCcccccccccc---CCccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFC 212 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~~ 212 (484)
.+.-...|||||+.+... +.+.-|.|.||.+|+.+- .+..||.||..
T Consensus 39 ~~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~ 88 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKK 88 (381)
T ss_pred HhhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence 456678999999999877 346689999999999642 37899999974
No 61
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.53 E-value=0.012 Score=47.70 Aligned_cols=45 Identities=20% Similarity=0.530 Sum_probs=19.6
Q ss_pred CcCccccCCcC-CC-CCCce--eecCCCccccccccccC-------------Cccccccccc
Q 011525 168 PTCPICLERLD-PD-TSGIL--STICDHSFQCSCTAKWT-------------VLSCQVCRFC 212 (484)
Q Consensus 168 ptCpICLe~l~-~~-~~giv--t~~C~H~Fh~~Cl~~w~-------------~~~CPvCR~~ 212 (484)
..|+||...+. .+ ...++ ...|+..||..||..|- ...||.|+..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 57999998765 22 11112 23788999999999992 1358888763
No 62
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.26 E-value=2.7 Score=37.75 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhHHHh
Q 011525 398 IKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 398 ~~nq~~~~~~~~~~e~~~~~~~~---~~~~~i~eL~EQvrDLmf~ 439 (484)
.+....++..+++++.+...++. +|.++++||+.-|.||--.
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33444566666777777665554 5778888888888888443
No 63
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.24 E-value=0.03 Score=59.59 Aligned_cols=47 Identities=32% Similarity=0.618 Sum_probs=40.0
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+.+...||+|...+.+|. .++.|||.||..|+..|. +..||+|+..-
T Consensus 18 ~~~~l~C~~C~~vl~~p~---~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPV---QTTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCCC---CCCCCCCcccccccchhhccCcCCccccccc
Confidence 678899999999999992 236999999999999996 56999998643
No 64
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.39 E-value=2.4 Score=44.08 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER-------EITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~-------~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
.+.++.+.+|-+++.+..|..+-++.+..|-....+-.+....|-++ ...-++.+++.|..|+-.|+|||-=+
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777766655443333333322222222222233222 23456778889999999999999866
Q ss_pred hhHHHh
Q 011525 441 EAQKTL 446 (484)
Q Consensus 441 eaq~ki 446 (484)
.+==.+
T Consensus 218 rnLLQl 223 (401)
T PF06785_consen 218 RNLLQL 223 (401)
T ss_pred HHHHHh
Confidence 553333
No 65
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.24 E-value=6.1 Score=35.63 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
.++.++.++..++.+. ......|......|..+-..++.+. ......+.||.+|++=|--.|++
T Consensus 67 e~~~~~~~~~~l~~~~---~~a~~~l~~~e~sw~~qk~~le~e~----~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 67 ELQELQQEINELKAEA---ESAKAELEESEASWEEQKEQLEKEL----SELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444333 2344467777778887766666553 34446789999999988877764
No 66
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=93.24 E-value=0.028 Score=43.82 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=27.2
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC----Cccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQV 208 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~----~~~CPv 208 (484)
.-...|||.+..|.+| +....|+|+|....+..|- ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4457999999999999 3567999999999998774 456887
No 67
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=93.04 E-value=0.7 Score=42.37 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=59.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|-.||..++.++ -.|.+++|+++..+ .++-...+.|.+.++|+.-...+|+..++.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHF-GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 357789999999999999999999886 47999999985432 246678899999999999999999986654
No 68
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=92.89 E-value=5.8 Score=42.90 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.6
Q ss_pred CccccccccccCCcccccccc
Q 011525 191 HSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 191 H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
..||..| +|++|..
T Consensus 123 ~gFC~~C-------~C~iC~k 136 (446)
T PF07227_consen 123 PGFCRRC-------MCCICSK 136 (446)
T ss_pred CCccccC-------CccccCC
Confidence 5799988 7999966
No 69
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.043 Score=58.45 Aligned_cols=46 Identities=28% Similarity=0.521 Sum_probs=38.4
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..-...|.||...|..| ++++|||+||..||.+-. ...||.||...
T Consensus 81 ~~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDEL 128 (398)
T ss_pred ccchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCccccccc
Confidence 35677999999999999 777999999999988643 57899999754
No 70
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.044 Score=57.78 Aligned_cols=44 Identities=36% Similarity=0.879 Sum_probs=34.8
Q ss_pred CCcCccccCCcCCCC-CCceeecCCCccccccccccC----Cccccccc
Q 011525 167 LPTCPICLERLDPDT-SGILSTICDHSFQCSCTAKWT----VLSCQVCR 210 (484)
Q Consensus 167 ~ptCpICLe~l~~~~-~givt~~C~H~Fh~~Cl~~w~----~~~CPvCR 210 (484)
-.+|||||+-+.-+. .-++.+.|+|.|=.+|+.+|. ...||.|.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~ 52 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCS 52 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccC
Confidence 358999999776553 346688999999999999995 35688885
No 71
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.10 E-value=5.9 Score=46.14 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEA---KKAVADVNSKLIKNQEIMR 405 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e---~~~l~~ln~~L~~nq~~~~ 405 (484)
++..+.-+|++++..|+++ +.++++||+.|.+++.++.
T Consensus 452 qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele 492 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE 492 (1243)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555778888777765 4556788888877766543
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.02 E-value=6.1 Score=39.55 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 323 KVEAIVDEYNRLLATQLETQRQYYESLLAEAK 354 (484)
Q Consensus 323 K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~ 354 (484)
++|.....+....+ +++.++....++..
T Consensus 14 ~lD~e~~rl~~~~~----~~~~~l~k~~~e~e 41 (239)
T COG1579 14 KLDLEKDRLEPRIK----EIRKALKKAKAELE 41 (239)
T ss_pred HHHHHHHHHHHhhh----hhHHHHHHHHHHHH
Confidence 55555555555555 66666665555544
No 73
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.025 Score=46.48 Aligned_cols=43 Identities=30% Similarity=0.645 Sum_probs=29.6
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC-----Ccccccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 213 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-----~~~CPvCR~~~ 213 (484)
+||-|--.-|+- .++.-.|.|.||..|+.+|. ...||.||...
T Consensus 33 ~Cp~Ck~PgDdC--PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 33 CCPDCKLPGDDC--PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred cCCCCcCCCCCC--ccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 556555443332 12334799999999999995 45799999753
No 74
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.78 E-value=6.2 Score=49.82 Aligned_cols=109 Identities=23% Similarity=0.303 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESLIP--ETV---EKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKE 410 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~~~--~~~---~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~ 410 (484)
++.||.+..=|+..|.+.+.+.+.... ++. .+....++..+...++.+.+....++..|+.|...+..+...+.+
T Consensus 1430 ~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e 1509 (1930)
T KOG0161|consen 1430 VAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE 1509 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777776655443211 111 123445666677777777777777888888888888777777666
Q ss_pred HHHHHH---HHHHHHHHHHHhHHHHHHhHHHhhhhHH
Q 011525 411 IEEREI---TSLRLRDATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 411 ~e~~~~---~~~~~~~~~i~eL~EQvrDLmf~leaq~ 444 (484)
++.+.. ..++..+.++.||+.++-+++--+++.+
T Consensus 1510 ~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE 1546 (1930)
T KOG0161|consen 1510 GGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEE 1546 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 655443 2334456678888888888877666654
No 75
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.29 E-value=9.6 Score=41.02 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 327 IVDEYNRLLA--TQLETQRQYYESLLAEAKSKR---ESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKN 400 (484)
Q Consensus 327 ~~~EY~~LLt--sQLEsQR~yyE~~l~~~~~~~---~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n 400 (484)
...||..|.+ .-||+|++--|..-.+.-.+. -+++.-.+++.++-....+|.+++.++.|..+++.+...|..+
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl 326 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSL 326 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666 567777776665444433221 1233333445555555666666766666665555544444333
No 76
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.21 E-value=0.043 Score=49.90 Aligned_cols=35 Identities=26% Similarity=0.753 Sum_probs=30.4
Q ss_pred CCcCccccCCcCCCCCCceeecCC------CccccccccccC
Q 011525 167 LPTCPICLERLDPDTSGILSTICD------HSFQCSCTAKWT 202 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~~C~------H~Fh~~Cl~~w~ 202 (484)
...|.||+++++. ..|++.++|+ |-||.+|+.+|.
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 3479999999998 6899999996 569999999993
No 77
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.10 E-value=10 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 419 LRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
++...+++..|+..|..+-.-++.
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555544444443
No 78
>PRK09039 hypothetical protein; Validated
Probab=90.94 E-value=8.9 Score=40.27 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLA 351 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~ 351 (484)
+.++..+..+|. .++.+|.+-++.++
T Consensus 80 ~~~l~~l~~~l~-----~a~~~r~~Le~~~~ 105 (343)
T PRK09039 80 QDSVANLRASLS-----AAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 455666666666 44445555444433
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.89 E-value=8 Score=35.41 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011525 377 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 377 ~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvr 434 (484)
+.+...+.++.+.+...++.+.+....++..+..........++.++.+|..|++++.
T Consensus 93 ~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 93 EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444445555555555555555666666666677788889999999874
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.86 E-value=16 Score=40.82 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLA 336 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLt 336 (484)
..+++.+..|-..|+.
T Consensus 142 Q~qlE~~qkE~eeL~~ 157 (546)
T PF07888_consen 142 QNQLEECQKEKEELLK 157 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.85 E-value=1.2 Score=44.35 Aligned_cols=42 Identities=21% Similarity=0.497 Sum_probs=28.6
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccCCccccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 212 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~ 212 (484)
-|-.|.-+=+ . .+.-.+.|.|.||..|...-....||.|+..
T Consensus 5 hCn~C~~~~~-~-~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ 46 (233)
T KOG4739|consen 5 HCNKCFRFPS-Q-DPFFLTACRHVFCEPCLKASSPDVCPLCKKS 46 (233)
T ss_pred EeccccccCC-C-CceeeeechhhhhhhhcccCCccccccccce
Confidence 3666664444 2 4456778999999999865444478888764
No 82
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.17 Score=51.05 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=35.5
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccc---cC-Cccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WT-VLSCQVCRFC 212 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~---w~-~~~CPvCR~~ 212 (484)
-+...+||+|.+.=..| .+..+|+|.||.-|+.. |. ...||.|-..
T Consensus 236 ~t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred ccCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCC
Confidence 35677999999877666 34456999999999985 43 4689999754
No 83
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.75 E-value=4.1 Score=33.32 Aligned_cols=43 Identities=7% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 411 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~ 411 (484)
+..++.+|+.+-..+..+...|++-|..|+.++..|..++..+
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677778888888888888888888776544
No 84
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=90.73 E-value=0.058 Score=51.97 Aligned_cols=40 Identities=30% Similarity=0.639 Sum_probs=30.3
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccc-c-CCcccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAK-W-TVLSCQVCRF 211 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~-w-~~~~CPvCR~ 211 (484)
.-|.||-+.+..| +.+.|||.||..|... . ....|-+|-.
T Consensus 197 F~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk 238 (259)
T COG5152 197 FLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGK 238 (259)
T ss_pred eeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecch
Confidence 4899999999999 7889999999888653 2 2444555543
No 85
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.67 E-value=6.2 Score=43.45 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 343 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 422 (484)
Q Consensus 343 R~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~ 422 (484)
+.||+.++.++..+....-++++ .....++.|..+++..+++++. +...++....++..|++++....+-.
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~--~f~~Ec~aL~~rL~~aE~ek~~-------l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAV--HFYAECRALQKRLESAEKEKES-------LEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56888888887754332212221 2234556666666666555543 33334444555666666666666666
Q ss_pred HHHHHhHHHHHHhHHHhhhhHH
Q 011525 423 DATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~leaq~ 444 (484)
++|+..|.|+|--|--.|..|.
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766666554
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.63 E-value=0.16 Score=43.21 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=27.7
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~ 199 (484)
.+...|++|..++.. +.+...||||.||..|..
T Consensus 76 ~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 456689999999986 456788999999999975
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.60 E-value=9.6 Score=35.09 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=5.9
Q ss_pred HHHHhHHHHHHh
Q 011525 424 ATILDLEEQIRD 435 (484)
Q Consensus 424 ~~i~eL~EQvrD 435 (484)
.++.+|..+.++
T Consensus 129 ~k~eel~~k~~~ 140 (143)
T PF12718_consen 129 EKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 88
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.25 E-value=9.7 Score=36.63 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHhHHHhhh
Q 011525 420 RLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~le 441 (484)
+...++|.-|+.+.+-|..+|+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777666666554
No 89
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.24 E-value=4.8 Score=46.82 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e 412 (484)
.++++.++++..-|..+|+...+.|....+....+|..+.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444443333
No 90
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=90.13 E-value=8.5 Score=38.53 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhccc
Q 011525 344 QYYESLLAEAKSKRESLI 361 (484)
Q Consensus 344 ~yyE~~l~~~~~~~~~~~ 361 (484)
.-|+..|.+++.+.+.-+
T Consensus 40 ~~~~~~l~~Ar~eA~~Ii 57 (255)
T TIGR03825 40 QEFEQILEKAEAEAAQII 57 (255)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777766654433
No 91
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.04 E-value=7.1 Score=44.84 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHhHHHh
Q 011525 404 MRKKFKEIEEREITS---LRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 404 ~~~~~~~~e~~~~~~---~~~~~~~i~eL~EQvrDLmf~ 439 (484)
.+.+.++||.+.+.+ ++.+++++.+|++++++|-.|
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555443322 344555555555555444333
No 92
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=89.98 E-value=3.5 Score=33.19 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
++.|+.+++.|-..-..++..|..|...+..|...-..+-++...+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888876554444444333
No 93
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.78 E-value=0.047 Score=55.57 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=29.7
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 201 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w 201 (484)
.....|.|||--|.+. ..+..+.|.|-||+.|+.++
T Consensus 113 ~p~gqCvICLygfa~~-~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASS-PAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCCCceEEEEEeecCC-CceeeehhHHHHHHHHHHHH
Confidence 4456899999999875 55778899999999999864
No 94
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=89.70 E-value=26 Score=37.92 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=28.7
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~ 200 (484)
.|...||||...+.+| +.++|+|+.|..|-..
T Consensus 2 eeelkc~vc~~f~~ep----iil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP----IILPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhccCc----eEeecccHHHHHHHHh
Confidence 4778999999999999 8899999999999764
No 95
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.63 E-value=0.077 Score=55.75 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=38.4
Q ss_pred CCcCccccCCcCCCCCCceeecCCCcccccccc----ccCCccccccccc
Q 011525 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTA----KWTVLSCQVCRFC 212 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~----~w~~~~CPvCR~~ 212 (484)
...|-.|-|++..-....-.+||.|-||..|+. +-.+.+||-||..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 568999999987765666789999999999998 3457899999953
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.37 E-value=2.8 Score=46.52 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 377 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 377 ~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
...+..|......|+..|..|.+..+.++-++.+-.......+..|+.+|..|.|+..-||.-+++
T Consensus 302 R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 302 RSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455556666677777776666655544455566777888888888887777665443
No 97
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.37 E-value=15 Score=43.68 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 416 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~ 416 (484)
.+..++.+++++++.|++|..+++.++..|.+.+..+.+++...+++..
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~ 439 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE 439 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556777888899999999999999999999998888888877666543
No 98
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=89.35 E-value=11 Score=43.77 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011525 330 EYNRLLATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 330 EY~~LLtsQLEsQR~yyE~~l~~~~~~ 356 (484)
+.+.| ...|+.||.-+|.+..++++.
T Consensus 517 ~~~~l-i~~l~~~~~~~e~~~~~~~~~ 542 (782)
T PRK00409 517 KLNEL-IASLEELERELEQKAEEAEAL 542 (782)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34443 456778888888777776643
No 99
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.21 E-value=22 Score=34.42 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHH
Q 011525 415 EITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 415 ~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
...+..+.+.+|..|++|+++.+
T Consensus 170 y~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 170 YRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455567777777777654
No 100
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.15 E-value=3.6 Score=44.80 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI-EE---REITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~-e~---~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
-+..++++++.+++++.++-+.|++.|+.|++.+.....+|... +. +.....+....++..|+.+|.||+-.|+.
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677777888887777777788888877766666555322 21 11222223334566777777777777654
No 101
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.77 E-value=17 Score=40.62 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 416 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~ 416 (484)
++.+|+.+.+.+......+..-+..|......++.++.++|+...
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433444444444555555555556655555443
No 102
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.67 E-value=22 Score=33.63 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 334 LLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAK 387 (484)
Q Consensus 334 LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~ 387 (484)
+-.+++|.++.-|...+++++.+-...-.... ..+.....+|+.+++++..++
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~-~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEF-AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33577777777777777777654321111111 123344455555555555443
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.65 E-value=14 Score=38.44 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 419 LRLRDATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+...+++|+++.++..++..-|..-+++.+
T Consensus 239 l~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 239 LEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999999988888777754
No 104
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.38 E-value=20 Score=32.93 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADV---NSKLIKNQEIMRKKFKEIEEREI 416 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~l---n~~L~~nq~~~~~~~~~~e~~~~ 416 (484)
.+..+++.|+.+++++...+..++.. +.....+.+.+.++|..||++..
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 35566667777777666655443221 12222334456666666665543
No 105
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.22 E-value=31 Score=37.86 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAK 354 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~ 354 (484)
....|++|..-+++.+.+++
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555433
No 106
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.22 E-value=24 Score=39.29 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHhHHHhhhhHH
Q 011525 423 DATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~leaq~ 444 (484)
..+++.|++.+.+..-.+..-.
T Consensus 384 ~~~~~~le~~~~~~~~~~~~~~ 405 (582)
T PF09731_consen 384 NSRLKALEEALDARSEAEDENR 405 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444433
No 107
>PRK09343 prefoldin subunit beta; Provisional
Probab=88.03 E-value=19 Score=32.14 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
++...|.+..+.+..+++.+|.... ...+++.+++.+++.+.-
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~----~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEK----KLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3444555555555566655555432 233466677777776654
No 108
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.00 E-value=12 Score=36.35 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---H
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESLIPETVEKA---VASKMQDIQNELDICEEAK---KAVADVNSKLIKNQEIMR---K 406 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~kl~~e~---~~l~~ln~~L~~nq~~~~---~ 406 (484)
.|+|+.|-.-|-.+|.+.+.--.+ .++++. +.++-.-.+...+.|.... ....--+++|...|.... .
T Consensus 35 IskLDaeL~k~~~Qi~k~R~gpaq---~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~ 111 (218)
T KOG1655|consen 35 ISKLDAELCKYKDQIKKTRPGPAQ---NALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKD 111 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888899988887543222 222211 1122222333334333221 111223455655554432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHh
Q 011525 407 KFKEIEEREITSLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
-.+++....+ +-+=++|++|+.++.|+|-.
T Consensus 112 ~~k~mK~~yk---kvnId~IedlQDem~Dlmd~ 141 (218)
T KOG1655|consen 112 TNKEMKKQYK---KVNIDKIEDLQDEMEDLMDQ 141 (218)
T ss_pred HHHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Confidence 2333332221 22236799999999998863
No 109
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.92 E-value=19 Score=37.45 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=9.4
Q ss_pred HHHHhHHHHHHhHHHhhh
Q 011525 424 ATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~le 441 (484)
+++.+|+++|+++-..++
T Consensus 251 ~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 251 EQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555444
No 110
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=87.84 E-value=27 Score=33.87 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA 389 (484)
Q Consensus 322 ~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~ 389 (484)
...++-..||-.+|..-+||-|.-|-..+++... .+..|++.+++ ..+-+.++++++.+-+.+.++
T Consensus 99 rE~~~~~~e~~e~l~km~EslRi~~~~e~~k~~~-Re~~iak~m~K-~pq~~a~~~a~~~k~e~~a~a 164 (225)
T KOG4848|consen 99 REFNNAKKEYKELLKKMRESLRILYTKEPEKFTF-REAEIAKNMKK-YPQTLAKYEASLVKQEQEADA 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHH-hHHHHHHHHHHHHHhHHHhhH
Confidence 4567788899999999999999998887777663 23345554442 334455556666555444433
No 111
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.82 E-value=0.23 Score=56.76 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=35.3
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
....|..|--.|+-| .+-..|+|+||..|+. -+...||.|+.
T Consensus 839 q~skCs~C~~~LdlP---~VhF~CgHsyHqhC~e-~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP---FVHFLCGHSYHQHCLE-DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccc---eeeeecccHHHHHhhc-cCcccCCccch
Confidence 457999999999998 4778999999999997 22457999986
No 112
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.71 E-value=23 Score=32.71 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 416 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~ 416 (484)
..++..+..++..+..++..++.-+..|.+..+.++.+|.+||....
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455555555555555555556666666666666666665543
No 113
>PRK12704 phosphodiesterase; Provisional
Probab=87.62 E-value=23 Score=39.35 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=5.5
Q ss_pred CccCcEEeecC
Q 011525 454 GIKGGTVLPVS 464 (484)
Q Consensus 454 ei~~G~v~~~~ 464 (484)
-+.+-||.+++
T Consensus 205 ~~~e~~~~~v~ 215 (520)
T PRK12704 205 HVAETTVSVVN 215 (520)
T ss_pred hhhhhceeeee
Confidence 35555554443
No 114
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.42 E-value=4 Score=42.79 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 397 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
+....+.++.+++..+.+.+ ...+++.-|++-|+||-.
T Consensus 250 fdiEre~LRAel~ree~r~K----~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 250 FDIEREFLRAELEREEKRQK----MLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhh
Confidence 33344445555444443332 333577888888888754
No 115
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=87.09 E-value=0.087 Score=54.30 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+....+|++|--.|-++. ..+-|-|+||.+||.+.. ...||.|....
T Consensus 12 ~n~~itC~LC~GYliDAT---TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT---TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred cccceehhhccceeecch---hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 456779999998887762 355799999999999652 67899998643
No 116
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=87.05 E-value=9.5 Score=41.41 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 401 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 401 q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
+++++.++...-.+.-.=.+.|++-+..|+-||+||-.||.=
T Consensus 204 teelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInF 245 (621)
T KOG3759|consen 204 TEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINF 245 (621)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556676666655555555667878899999999999888854
No 117
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.97 E-value=22 Score=34.57 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRLLATQLETQRQYYE 347 (484)
Q Consensus 322 ~K~e~~~~EY~~LLtsQLEsQR~yyE 347 (484)
.....|-..|+......|+-.+..=+
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKe 34 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKE 34 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999977666544
No 118
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.89 E-value=22 Score=41.02 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHh
Q 011525 379 ELDICEEAKKAVADVNSKLIKNQEIM-------RKKF----KEIEEREITSLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 379 ~l~kl~~e~~~l~~ln~~L~~nq~~~-------~~~~----~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
..+.|...+.++++-|..|.+++..- ..-+ .++|- ....+..+|.+|.||+..|.+||.-
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei-~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEI-AQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555666666666666554321 1111 12221 2234567889999999999999873
No 119
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.87 E-value=0.28 Score=50.02 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=32.9
Q ss_pred cCccccCCcCCCCCCceeecCCCcccccccccc--CCcccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 211 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR~ 211 (484)
.|-||...|..| |.+.|+|.||..|-.+. ....|++|..
T Consensus 243 ~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 243 KCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred cccccccccccc----hhhcCCceeehhhhccccccCCcceeccc
Confidence 699999999999 88899999999997743 3578888854
No 120
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.83 E-value=16 Score=42.53 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 325 EAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 325 e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~ 355 (484)
.....+.+.|| ..|+.||..+|.+..++++
T Consensus 507 ~~~~~~~~~li-~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 507 GEFKEEINVLI-EKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33444444444 5677777778877777664
No 121
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.81 E-value=0.3 Score=49.68 Aligned_cols=43 Identities=26% Similarity=0.539 Sum_probs=36.3
Q ss_pred cCccccCCcCCCCCCceeecCCCcccccccccc--CCcccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 211 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR~ 211 (484)
.||+|.+-+......+..++|+|..|..|+..- .+..||+|..
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 499999988777666778999999999998853 3589999988
No 122
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=86.78 E-value=0.31 Score=36.82 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=19.5
Q ss_pred CccccCCcCCCCCCceeecCCCcccccccccc---CCccccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFC 212 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~~ 212 (484)
||+|.+.++.....+..=+|+...|..|...- .+..||-||..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 89999999765444444456777777775532 26789999964
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.74 E-value=24 Score=38.59 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=9.9
Q ss_pred ceeEeeccchhhh
Q 011525 267 QQIWDYVGDNYVH 279 (484)
Q Consensus 267 ~~Vwcy~cd~~Vh 279 (484)
.-++||.|+.|.-
T Consensus 231 k~lfdY~~~~Y~~ 243 (622)
T COG5185 231 KLLFDYFTESYKS 243 (622)
T ss_pred HHHHHHHHHHHHH
Confidence 3468999999953
No 124
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.49 E-value=0.49 Score=48.73 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=62.5
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCcccccccccc--CCccccccccccccC-----------CCCcc-------
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRFCHQQD-----------ERPTC------- 221 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR~~~~~~-----------~~~~C------- 221 (484)
....++..||||.+.+..| ...|+ ++|..|..-- ....||.||...+.- ....|
T Consensus 43 ~~~~~lleCPvC~~~l~~P-----i~QC~-nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC 116 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPP-----IFQCD-NGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGC 116 (299)
T ss_pred ccchhhccCchhhccCccc-----ceecC-CCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCC
Confidence 3456899999999999988 45674 4555555522 256899999764310 00111
Q ss_pred -------------CCCCCCCceeecc----ccccccccCCCCCccccccCCCCCceee-eCCCceeEeeccchhhhhhh
Q 011525 222 -------------SVCGTVENLWVCL----ICGFVGCGRYKEGHAVRHWKDTQHWYSL-DLRTQQIWDYVGDNYVHRLN 282 (484)
Q Consensus 222 -------------~~C~~~~nlWiCL----~CG~vGCgr~~~~HA~~H~~~t~H~~~l-~l~t~~Vwcy~cd~~Vhrl~ 282 (484)
..|.. .+|-|. .|.+.| + ..--..|+..+ |...+ .+.+.++++++.|.+.+.+.
T Consensus 117 ~~~~~Y~~~~~HE~~C~f--~~~~CP~p~~~C~~~G--~--~~~l~~H~~~~-hk~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
T KOG3002|consen 117 TKSFPYGEKSKHEKVCEF--RPCSCPVPGAECKYTG--S--YKDLYAHLNDT-HKSDIITLTGFDFVFVATDENLLGAA 188 (299)
T ss_pred ceeecccccccccccccc--CCcCCCCCcccCCccC--c--HHHHHHHHHhh-ChhhhhhccccceecccCCccccccc
Confidence 12222 344443 233332 1 12234566655 77744 45566888888888776543
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.39 E-value=27 Score=32.22 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQE-------IMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~-------~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
.+...++.|+.+|+.+..|+..+...-+.++.... .....++.+|.............+..|+.|++.|
T Consensus 63 ~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 63 ELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567777788888777777655433333332222 2334455555554444444445677777777665
No 126
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.28 E-value=38 Score=38.54 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHHHHhHHHhhhhHHHh
Q 011525 421 LRDATILDLEEQIRDLTVYIEAQKTL 446 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDLmf~leaq~ki 446 (484)
++++++.+|++.++++--....+.+|
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kL 144 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKL 144 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666655555444444
No 127
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.23 E-value=25 Score=34.97 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=10.8
Q ss_pred hHHHHHHhHHHhhhhHHHh
Q 011525 428 DLEEQIRDLTVYIEAQKTL 446 (484)
Q Consensus 428 eL~EQvrDLmf~leaq~ki 446 (484)
.+.|++|-||--+......
T Consensus 146 ~~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 146 SLAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 3446677776655544444
No 128
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=86.10 E-value=24 Score=34.63 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhHH
Q 011525 391 ADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLT 437 (484)
Q Consensus 391 ~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~---~~~~~i~eL~EQvrDLm 437 (484)
+++|..-...|.....++..||.+.+..+. +.+..+..|+.+|.++-
T Consensus 160 e~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 160 EEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555566655554443 23345556666665553
No 129
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=9.4 Score=33.60 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHhHH
Q 011525 422 RDATILDLEEQIRDLT 437 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLm 437 (484)
..++|..|++||+||-
T Consensus 88 l~~rvd~Lerqv~~Le 103 (108)
T COG3937 88 LTERVDALERQVADLE 103 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467889999999884
No 130
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=85.95 E-value=0.24 Score=52.25 Aligned_cols=41 Identities=32% Similarity=0.614 Sum_probs=32.6
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC----Ccccccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFCH 213 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~----~~~CPvCR~~~ 213 (484)
-|-||.|-=.+- -.-+|||..|..|+..|. ...||.||+.-
T Consensus 371 LCKICaendKdv----kIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 371 LCKICAENDKDV----KIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHhhccCCCc----ccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 689998755432 455999999999999996 45799999753
No 131
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.87 E-value=0.34 Score=48.28 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCcccccccccc--CCcccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRF 211 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR~ 211 (484)
.-.-||||.+.|...+.-.+.-+|||+|+..|+.+. .+..||+|-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~ 267 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDK 267 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCC
Confidence 455799999999988777778899999999999986 4889999965
No 132
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.79 E-value=13 Score=36.79 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 378 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 378 ~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e 412 (484)
.|++.+.+|+.+|..-++.|....+..+.+++.++
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443334444444444444444443
No 133
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.79 E-value=6.7 Score=31.95 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~ 408 (484)
.|.+.|.++...+...+.+|+.-|+.|...+..|+.++
T Consensus 32 Eknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 32 EKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555443
No 134
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.67 E-value=11 Score=39.18 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 011525 341 TQRQYYESLLAEAK 354 (484)
Q Consensus 341 sQR~yyE~~l~~~~ 354 (484)
..+..|..-+.++.
T Consensus 23 ~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 23 KERDTYQEFLKKLE 36 (314)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444554444444
No 135
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.59 E-value=32 Score=38.40 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011525 337 TQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~~~~~ 356 (484)
+|+++-.+.|+.+|+.+..+
T Consensus 283 ~~~~~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 56666666666666666543
No 136
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.51 E-value=20 Score=43.01 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhHHH-hhhhHHHh
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTV-YIEAQKTL 446 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~---~~~~~i~eL~EQvrDLmf-~leaq~ki 446 (484)
.+++.++.+++.++++.+.|.+.-..+.....+....+++.++-...+.+ ....+++++++++.+|+- -|+.+.|+
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~ 1021 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKL 1021 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34444444555555555444444444444444445555444443332222 223467777777788877 67777777
Q ss_pred hcc
Q 011525 447 TNM 449 (484)
Q Consensus 447 ~~~ 449 (484)
+++
T Consensus 1022 e~~ 1024 (1293)
T KOG0996|consen 1022 EAI 1024 (1293)
T ss_pred HHH
Confidence 664
No 137
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=0.19 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.780 Sum_probs=21.6
Q ss_pred ecCCCccccccccccC--Ccccccccc
Q 011525 187 TICDHSFQCSCTAKWT--VLSCQVCRF 211 (484)
Q Consensus 187 ~~C~H~Fh~~Cl~~w~--~~~CPvCR~ 211 (484)
-.|+|.||-.|+.+|. ...||+|..
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCc
Confidence 3799999999999995 568999965
No 138
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=85.42 E-value=4 Score=42.85 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...++.|.|-.+|..+|-.||..++..+-+ |..++|+++..+ -++=...+.|.+.++|+.-...+||..+..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~-V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGP-INTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 346789999999999999999999987754 999999985321 234468889999999999999999987754
No 139
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=85.31 E-value=24 Score=38.85 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 397 LIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~ 413 (484)
|.+..+.+++++.+++.
T Consensus 145 l~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 145 LREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555544443
No 140
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=85.27 E-value=63 Score=36.04 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=12.0
Q ss_pred HHHHhHHHHHHhHHHhhhhHHHh
Q 011525 424 ATILDLEEQIRDLTVYIEAQKTL 446 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~leaq~ki 446 (484)
.++.+|..+|..|-..+.+....
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~ 400 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEA 400 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554443
No 141
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=85.27 E-value=38 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~ 355 (484)
+...++.+...|+....+...
T Consensus 345 ~~~e~~~~~~~~~~~~~e~~~ 365 (1163)
T COG1196 345 LLEELEQLLAELEEAKEELEE 365 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666655555443
No 142
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.22 E-value=11 Score=44.48 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLL-AEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV--------ADVNSKLIKNQEIMRKK 407 (484)
Q Consensus 337 sQLEsQR~yyE~~l-~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l--------~~ln~~L~~nq~~~~~~ 407 (484)
.++++|+.|||..| .++..+......+++. .+..++.+|..++..+.+++..+ ..||+.|......+...
T Consensus 758 ~~~~~~~~~~e~el~sel~sqLt~ee~e~l~-kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~e 836 (1200)
T KOG0964|consen 758 HKLESQSNYFESELGSELFSQLTPEELERLS-KLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQE 836 (1200)
T ss_pred HHHHHHHHhHHHHHhHHHHhhcCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 57889999999655 4443332222222222 34455566666666555544332 24555555444444332
Q ss_pred HH-------------------HHHHHHH---HHHHHHHHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 408 FK-------------------EIEEREI---TSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 408 ~~-------------------~~e~~~~---~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+. .++.+.. ..++..+..|.++.-+++++|+-+|....++.
T Consensus 837 i~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek 899 (1200)
T KOG0964|consen 837 IGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEK 899 (1200)
T ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111 11223456677777888888888887776655
No 143
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.15 E-value=0.29 Score=49.90 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=33.8
Q ss_pred CcCccccCCcCCCCCCceeecCCCcccccccccc---CCcccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRF 211 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~ 211 (484)
+.||.|.-.+..++ -|.-|+|.||..||... .+..||.|..
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 68999999999882 35578999999999854 2778999975
No 144
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.89 E-value=35 Score=39.17 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 328 VDEYNRLLATQLETQRQYYESLLAEAK 354 (484)
Q Consensus 328 ~~EY~~LLtsQLEsQR~yyE~~l~~~~ 354 (484)
+.+.+.-+..|+|.|.+-||..+....
T Consensus 810 qqqL~~k~~~q~Eq~~rrFeqE~~~kk 836 (1187)
T KOG0579|consen 810 QQQLQAKGIKQVEQQARRFEQEQTNKK 836 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555566777777777776555444
No 145
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.80 E-value=40 Score=37.42 Aligned_cols=12 Identities=33% Similarity=0.290 Sum_probs=6.5
Q ss_pred CCccCcEEeecC
Q 011525 453 DGIKGGTVLPVS 464 (484)
Q Consensus 453 ~ei~~G~v~~~~ 464 (484)
+-+.+-||.+++
T Consensus 198 ~~~~e~~~~~v~ 209 (514)
T TIGR03319 198 DHVAETTVSVVN 209 (514)
T ss_pred hhhhhheeeeEE
Confidence 345666665444
No 146
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=84.64 E-value=5 Score=41.10 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-.+|..++-.||..++++| ..|..+||+++. .-.++-...+.|.+..+|..=...+||..|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~f-G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPF-GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34579999999999999999999877 468889999854 12346678999999999999999999998876
No 147
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.55 E-value=19 Score=30.96 Aligned_cols=67 Identities=22% Similarity=0.414 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIK---NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~---nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
-.+..+++.+++.+..+++.+...-..+.+ +.+.+..+++.+.+ .++..+++..++++++.+++..|
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~----~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKE----EIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566677777777666655322112221 23334433333332 23444556778888888887654
No 148
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.55 E-value=30 Score=37.99 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 339 LETQRQYYESLLAEAKS 355 (484)
Q Consensus 339 LEsQR~yyE~~l~~~~~ 355 (484)
|+.|+.+.+..+..+.+
T Consensus 304 l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 304 IKDKLKELQHSLEKLDT 320 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 149
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=0.8 Score=47.86 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=34.2
Q ss_pred CCcCccccCCcCCCCCCceeecCCCc-cccccccccC--Ccccccccccc
Q 011525 167 LPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
--.|-||+....+. +.+||.|. .|..|..... ...||+||...
T Consensus 290 gkeCVIClse~rdt----~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 290 GKECVICLSESRDT----VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred CCeeEEEecCCcce----EEecchhhehhHhHHHHHHHhhcCCCccccch
Confidence 45899999988876 88999998 4778877543 56799999754
No 150
>PRK09039 hypothetical protein; Validated
Probab=84.32 E-value=26 Score=36.83 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHhHH
Q 011525 397 LIKNQEIMRKKFKEIEEREITSL---RLRDATILDLEEQIRDLT 437 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~---~~~~~~i~eL~EQvrDLm 437 (484)
|....+.++.++..++.....+. ++.+.+|.+|+..|+..+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544433222 233445666665555554
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.25 E-value=16 Score=35.72 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRK 406 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~ 406 (484)
..+++++++........|++-|+.|.+..+..++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333
No 152
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=0.3 Score=50.07 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=37.3
Q ss_pred eecCCCccccccccccCCccccccccccccCCCCccCCCCCCCceeeccccccccccCC
Q 011525 186 STICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 244 (484)
Q Consensus 186 t~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~ 244 (484)
.++|.|.||..|-....+..||.|--..+.. ..| ....+++|- +..||-|.
T Consensus 106 mIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrI-----eq~-~~g~iFmC~--~~~GC~RT 156 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSDSDKICPLCDDRVQRI-----EQI-MMGGIFMCA--APHGCLRT 156 (389)
T ss_pred ccccchhhhhhhhhcCccccCcCcccHHHHH-----HHh-cccceEEee--cchhHHHH
Confidence 5799999999998777788999996533211 122 445788987 77889873
No 153
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.14 E-value=19 Score=39.22 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011525 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 324 ~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~ 356 (484)
++.+..++...-.++..+-+.|++..+.+++++
T Consensus 144 ~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~ 176 (498)
T TIGR03007 144 LTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKK 176 (498)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHH
Confidence 344444434344455666677777777766654
No 154
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=0.45 Score=46.82 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=37.6
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC----------Cccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----------VLSCQVCRFC 212 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~----------~~~CPvCR~~ 212 (484)
-..|.|..|--.|....+ +.+.|-|.||..|+..|. ...||.|...
T Consensus 48 DY~pNC~LC~t~La~gdt--~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDT--TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred CCCCCCceeCCccccCcc--eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 468999999998876543 678999999999999883 4689999754
No 155
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.37 E-value=39 Score=32.82 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 326 AIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 326 ~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~ 355 (484)
+..+--..+=..+||.|+.|.|..|...++
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~ 126 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEA 126 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778999999999988877653
No 156
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=83.19 E-value=29 Score=29.84 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 367 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEI---MRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 367 ~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~---~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
+....+..++.+....+....+.+.+....|...... ..+++..||+ .....|+-..+|+.+++.
T Consensus 31 ~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~----~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 31 KATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ----TVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 3444555555555555555444444444444332222 2223333332 223344555555555543
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=83.18 E-value=0.21 Score=54.35 Aligned_cols=43 Identities=21% Similarity=0.643 Sum_probs=34.6
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccccc-------CCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW-------TVLSCQVCRF 211 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w-------~~~~CPvCR~ 211 (484)
.+.-.|-+|-+.-.++ +...|.|.||+-|+..+ .+..||+|-.
T Consensus 534 k~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred cCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 4566899999988887 78899999999999643 1568888854
No 158
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.09 E-value=15 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 331 YNRLLATQLETQRQYYE 347 (484)
Q Consensus 331 Y~~LLtsQLEsQR~yyE 347 (484)
+++++...+-.||..|=
T Consensus 86 ~~~~~~~l~raqrn~Yi 102 (216)
T KOG1962|consen 86 RTHLLEALFRAQRNLYI 102 (216)
T ss_pred HHHHHHHHHHHHhhhHH
Confidence 45566666666666543
No 159
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.07 E-value=18 Score=38.95 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAK 387 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~ 387 (484)
++..++++.+.+|.+|++|.
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~ 64 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEEN 64 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554443
No 160
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=82.99 E-value=22 Score=34.01 Aligned_cols=88 Identities=20% Similarity=0.358 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 343 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 422 (484)
Q Consensus 343 R~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~ 422 (484)
-.||..+.+-+..+....+.+.++ .+...+++.+.+.+.+..++..++ ..|.++...+.....++.. .+...
T Consensus 90 ~syY~~L~~~id~~~~~~~~~~i~-~L~~~i~~~q~~~~~~i~~L~~f~---~~l~~D~~~l~~~~~~l~~----~l~~~ 161 (184)
T PF05791_consen 90 QSYYDTLVEAIDQKDKEDLKEIIE-DLQDQIQKNQDKVQALINELNDFK---DKLQKDSRNLKTDVDELQS----ILAGE 161 (184)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHH----HHhcc
Confidence 458887776664333333333333 344455555666665555554433 3677777777766655444 34444
Q ss_pred HHHHHhHHHHHHhHHH
Q 011525 423 DATILDLEEQIRDLTV 438 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf 438 (484)
...|.+|+.+|.++--
T Consensus 162 ~g~I~~L~~~I~~~~~ 177 (184)
T PF05791_consen 162 NGDIPQLQKQIENLNE 177 (184)
T ss_dssp T--HHHHHHHHHHHTG
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5677888888776643
No 161
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=82.97 E-value=30 Score=29.87 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 011525 334 LLATQLETQRQYYESLLAEAKSKRE 358 (484)
Q Consensus 334 LLtsQLEsQR~yyE~~l~~~~~~~~ 358 (484)
.|..+++.||.-...+..++.+++.
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~ 27 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERS 27 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999988888888886654
No 162
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=82.86 E-value=23 Score=35.51 Aligned_cols=39 Identities=13% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEA-------KKAVADVNSKLIKNQEIMRKKFK 409 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e-------~~~l~~ln~~L~~nq~~~~~~~~ 409 (484)
.++.+++.++..|.+| -+-|+.+|++|...+.++...++
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444555555555444 44455666666555555544433
No 163
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.81 E-value=23 Score=35.23 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=5.1
Q ss_pred HHHHhHHHHHH
Q 011525 424 ATILDLEEQIR 434 (484)
Q Consensus 424 ~~i~eL~EQvr 434 (484)
.-+.+|++.|.
T Consensus 109 ~m~~~L~~~v~ 119 (251)
T PF11932_consen 109 QMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHh
Confidence 34444544444
No 164
>PRK00106 hypothetical protein; Provisional
Probab=82.72 E-value=56 Score=36.57 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=6.4
Q ss_pred CCccCcEEeecC
Q 011525 453 DGIKGGTVLPVS 464 (484)
Q Consensus 453 ~ei~~G~v~~~~ 464 (484)
+-+.+-||.+++
T Consensus 219 ~~~~e~tvs~v~ 230 (535)
T PRK00106 219 EYVTEQTITTVH 230 (535)
T ss_pred hhhhhheeeeEE
Confidence 445666665444
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=82.69 E-value=0.43 Score=49.51 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCcccccccccc---CCccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~~ 212 (484)
|..-||.|.|.||........-+||...|.-|...- .+..||.||..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 455699999999987666666677877777775432 26799999964
No 166
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=82.53 E-value=0.48 Score=54.28 Aligned_cols=45 Identities=29% Similarity=0.653 Sum_probs=35.4
Q ss_pred CCCcCccccCCcCCCCCCceee---cCCCccccccccccC---------Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILST---ICDHSFQCSCTAKWT---------VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~---~C~H~Fh~~Cl~~w~---------~~~CPvCR~~~ 213 (484)
..-.|.||.+++.... .++ .|=|.||..||.+|. .+.||.|++.+
T Consensus 190 ~~yeCmIC~e~I~~t~---~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTA---PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccC---CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4568999999998652 233 456999999999993 47899999654
No 167
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.51 E-value=28 Score=33.70 Aligned_cols=40 Identities=18% Similarity=0.488 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHH
Q 011525 397 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ 444 (484)
+++....+.+|+++||.+..+++++ .-.|++|-+||+-+.
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rE--------N~eLKElcl~LDeer 145 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRE--------NLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHhccc
Confidence 3444444555666666655444431 234678889998876
No 168
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=82.40 E-value=39 Score=30.81 Aligned_cols=68 Identities=25% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HHHHHHHHHHhHHHHHHhHHHh
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRK---KFKEIEEREIT---------SLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~---~~~~~e~~~~~---------~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
-...|+.++|.|..|+-.|++ -|.+.|+.++- .-++.|.+... .....+.+.++|=+|-+||+-|
T Consensus 35 l~eaL~~ELDsL~~EkvhLee---ilnkKqe~l~iLqlhcqeke~eaqrq~~~~~eck~R~~fe~qLE~lm~qHKdLwef 111 (134)
T PF15233_consen 35 LWEALQRELDSLNGEKVHLEE---ILNKKQETLRILQLHCQEKESEAQRQQTLLQECKLRLDFEEQLEDLMGQHKDLWEF 111 (134)
T ss_pred HHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777777665544 33344444331 11111111110 1122345677777777777766
Q ss_pred hhh
Q 011525 440 IEA 442 (484)
Q Consensus 440 lea 442 (484)
--.
T Consensus 112 h~~ 114 (134)
T PF15233_consen 112 HMP 114 (134)
T ss_pred ccH
Confidence 553
No 169
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=0.74 Score=48.16 Aligned_cols=41 Identities=27% Similarity=0.581 Sum_probs=29.8
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccccc-CCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW-TVLSCQVCRF 211 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w-~~~~CPvCR~ 211 (484)
-..+.|-||++...+. +-++|||.-| |..-- ....||+||.
T Consensus 303 ~~p~lcVVcl~e~~~~----~fvpcGh~cc--ct~cs~~l~~CPvCR~ 344 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSA----VFVPCGHVCC--CTLCSKHLPQCPVCRQ 344 (355)
T ss_pred CCCCceEEecCCccce----eeecCCcEEE--chHHHhhCCCCchhHH
Confidence 3456899999877664 7899999865 55422 2456999996
No 170
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=82.26 E-value=4.5 Score=43.21 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=58.5
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+..|.|-++|..+|-.||..++..+- .|..++|+++... .++-+..+.|.+...|..-...+||..+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFG-DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG 255 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC
Confidence 57899999999999999999987764 5888999986543 457789999999999999999999976643
No 171
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.18 E-value=13 Score=36.08 Aligned_cols=16 Identities=19% Similarity=0.518 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHHHhH
Q 011525 421 LRDATILDLEEQIRDL 436 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDL 436 (484)
.+++++.-++.+++.|
T Consensus 93 ~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 93 DKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 172
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.93 E-value=23 Score=40.95 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011525 327 IVDEYNRLLATQLETQRQYYESL 349 (484)
Q Consensus 327 ~~~EY~~LLtsQLEsQR~yyE~~ 349 (484)
-+.|...-=..-+|.||+--|++
T Consensus 325 GqaELerRRq~leeqqqreree~ 347 (1118)
T KOG1029|consen 325 GQAELERRRQALEEQQQREREEV 347 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666776666644
No 173
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.91 E-value=11 Score=31.32 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 409 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~ 409 (484)
.+...|.++.+.+...+..|..-|..|...+..|+.++.
T Consensus 32 ekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 32 EKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455566677777777777765543
No 174
>PRK10698 phage shock protein PspA; Provisional
Probab=81.86 E-value=56 Score=32.22 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~le 441 (484)
-+..+.++..++.+.......-..|..+...++.++.++..+...+.- + .+...-+.+|+..|.-++
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a-R-~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALML-R-HQAASSSRDVRRQLDSGK 160 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhCCC
Confidence 334556666666666666666666777777777777666655443322 1 223333444444444333
No 175
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.51 E-value=73 Score=35.69 Aligned_cols=84 Identities=15% Similarity=0.291 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESL-IPE--TVEKAVASKMQDIQNELDICEEAKKAVADVNSKL 397 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~-~~~--~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L 397 (484)
..+.+....+|..+.+.++-. -|+.|.++++-...- +.+ ..-+.+...+..++.+++.+..+.+.+.+..+.-
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~----ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~n 134 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPE----IEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKN 134 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999888754 566666655432211 111 1111334444455555555544444443333333
Q ss_pred HHHHHHHHHHH
Q 011525 398 IKNQEIMRKKF 408 (484)
Q Consensus 398 ~~nq~~~~~~~ 408 (484)
+...+.++.++
T Consensus 135 r~~i~~l~~~y 145 (560)
T PF06160_consen 135 REEIEELKEKY 145 (560)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 176
>PF04641 Rtf2: Rtf2 RING-finger
Probab=81.48 E-value=0.71 Score=46.43 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC-Ccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-VLSCQVCRF 211 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-~~~CPvCR~ 211 (484)
.....|||....|.....-+...+|||+|...++.... ...||+|-.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~ 158 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGK 158 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCC
Confidence 44568999999996543334456999999988887654 455666644
No 177
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.47 E-value=42 Score=39.16 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 011525 342 QRQYYESLLAEAKS 355 (484)
Q Consensus 342 QR~yyE~~l~~~~~ 355 (484)
...-++..|+++.+
T Consensus 509 ~~~~~~~li~~L~~ 522 (771)
T TIGR01069 509 FKEEINVLIEKLSA 522 (771)
T ss_pred hHHHHHHHHHHHHH
Confidence 33446666666654
No 178
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=81.36 E-value=9.8 Score=41.48 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=66.2
Q ss_pred CCcEEEEeccCCCCChhHHHHhhccccc-ceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCCCcccceee
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHM 142 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~-~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle~e~C~~ 142 (484)
.+.+|.|-.+|..+|-.+|..++..+-. .|..++|...+.. .+-+.++.|.+.+.|..-....||..+.. ..+..
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~---~~~~~ 468 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNE---PNGSA 468 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCC---CCCCc
Confidence 4678999999999999999999988855 6888998864432 46799999999999999999999997753 22333
Q ss_pred EEEeEEEEee
Q 011525 143 LFMLSVEYTE 152 (484)
Q Consensus 143 v~v~~v~~~~ 152 (484)
-|...|.|..
T Consensus 469 ~~~lkv~fs~ 478 (481)
T TIGR01649 469 PYHLKVSFST 478 (481)
T ss_pred cceEEEEecc
Confidence 3444455543
No 179
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=81.09 E-value=7.3 Score=41.62 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|-.+|..++-.||..|+..+- .|..++|+++.. ..++-...+.|.+...|..... .||..|..
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g 157 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVG-KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG 157 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 4577899999999999999999998876 899999998432 1356789999999999999975 77776643
No 180
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=81.07 E-value=0.66 Score=51.83 Aligned_cols=47 Identities=26% Similarity=0.690 Sum_probs=30.4
Q ss_pred CCCcCccccCCcCCCCCCcee--ecCCCccccccccccC-------Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILS--TICDHSFQCSCTAKWT-------VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt--~~C~H~Fh~~Cl~~w~-------~~~CPvCR~~~ 213 (484)
....|++|---=... .|.++ -.|+-.+|..|+..|. ++.||-||.+.
T Consensus 17 ~~~mc~l~~s~G~~~-ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGR-AGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhhccccccc-cCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 345677775433332 33222 3678889999999883 46799998753
No 181
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.96 E-value=42 Score=30.20 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 011525 379 ELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 379 ~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
.|..++.+...++.....|....+..+..+...+..........+.+|.+++..+.||.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555555555555555555555666778888888888876
No 182
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.88 E-value=75 Score=37.97 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhcccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 332 NRLLATQLETQRQYYESLLAEAK-SKRESLIPETV-----EKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR 405 (484)
Q Consensus 332 ~~LLtsQLEsQR~yyE~~l~~~~-~~~~~~~~~~~-----~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~ 405 (484)
+.++...||.||.+=. +++.+ ...+..+++.+ .+.++.++..|++++.++...+.+++++.+.|+..++++.
T Consensus 372 ~ralkllLEnrrlt~t--leelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGT--LEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred HHHHHHHHHhHHHHHH--HHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777775411 11111 12222222222 1235666677777776666666666666666655555544
Q ss_pred H
Q 011525 406 K 406 (484)
Q Consensus 406 ~ 406 (484)
.
T Consensus 450 ~ 450 (1195)
T KOG4643|consen 450 E 450 (1195)
T ss_pred H
Confidence 3
No 183
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=80.84 E-value=43 Score=39.70 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=10.8
Q ss_pred HhHHHHHHhHHHhhhhHHHhhcc
Q 011525 427 LDLEEQIRDLTVYIEAQKTLTNM 449 (484)
Q Consensus 427 ~eL~EQvrDLmf~leaq~ki~~~ 449 (484)
++..|--++..-+++..+.-+.+
T Consensus 875 ~e~~e~tk~~~~~~~~~e~~k~s 897 (1018)
T KOG2002|consen 875 EEYRERTKEILKLPEIEEEKKKS 897 (1018)
T ss_pred HHHHHHHHHHHhccchHhhhhhc
Confidence 34444444555555554444443
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.80 E-value=72 Score=33.21 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.2
Q ss_pred HHHhHHHHHHhHHH
Q 011525 425 TILDLEEQIRDLTV 438 (484)
Q Consensus 425 ~i~eL~EQvrDLmf 438 (484)
++.+++++|+++-.
T Consensus 247 ~k~e~~~~I~~ae~ 260 (312)
T smart00787 247 KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 185
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=80.56 E-value=25 Score=32.07 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHhHHHHHHhHHHhhhhHHHhhccCCCCCccCcEEe
Q 011525 422 RDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 461 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~leaq~ki~~~~~~~ei~~G~v~ 461 (484)
.++++.++.|+.+-|.|.++.=+++. .++||..|+|-
T Consensus 65 ~~~e~~~r~e~k~~l~~ql~qv~~L~---lgsEv~qg~vE 101 (131)
T PF11068_consen 65 FEQEKQERLEQKNQLLQQLEQVQKLE---LGSEVVQGQVE 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS----TT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEeeeeeE
Confidence 34566777888888888876655554 46789999883
No 186
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.42 E-value=24 Score=36.64 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 374 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 374 ~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
..|..+++-|+..+..+++ .|..-+...+.++.++| +++........+..+|++||+..--.|
T Consensus 108 ~~l~yqvd~Lkd~lee~eE---~~~~~~re~~eK~~elE-r~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEE---TLAQLQREYREKIRELE-RQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655554433333 44444445566666664 445555555677788888886655444
No 187
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.41 E-value=39 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 011525 395 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 395 ~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
..|.++.+.+...++.+++.. .....++.+++.+++.+.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~----~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQE----ERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 344444455555554444432 223346667777776654
No 188
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=19 Score=40.54 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=25.9
Q ss_pred hHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCCCc-cccee
Q 011525 80 DEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAE-AEVCH 141 (484)
Q Consensus 80 ~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle-~e~C~ 141 (484)
.||+.|+...-+.+.=+.+-...+-| -- -..-|+++.-.+||+ ||..+ ...|-
T Consensus 67 ~~li~il~~lP~~tkLVQVTg~~g~~---~s-----L~~lArr~G~~~~~~-~~P~eeA~~~A 120 (652)
T COG2433 67 RDLIRILKRLPEGTKLVQVTGRPGEQ---ES-----LWELARRHGIRVNGK-LNPYEEAYACA 120 (652)
T ss_pred hHHHHHHHhCCCCceEEEEeCCCCCc---ch-----HHHHHHHhCCCCCCC-CChHHHHHHHH
Confidence 58888887655444433333321211 11 134455555555553 55554 34564
No 189
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.96 E-value=73 Score=32.36 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 424 ATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+.+..|++.-|||-.-|..+.|-.+
T Consensus 164 esvqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4688999999999999988887644
No 190
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=79.92 E-value=62 Score=31.49 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 011525 335 LATQLETQRQYYESLLAEAKSKR 357 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~ 357 (484)
+..-|+..+.+-++.+.++++..
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~ 95 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELK 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887776543
No 191
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.78 E-value=62 Score=37.50 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHhHHHhhhh
Q 011525 422 RDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~lea 442 (484)
..++++.+++++++|---|+.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQ 657 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888887555544
No 192
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.53 E-value=67 Score=31.89 Aligned_cols=14 Identities=7% Similarity=0.446 Sum_probs=6.0
Q ss_pred HHHHhHHHHHHhHH
Q 011525 424 ATILDLEEQIRDLT 437 (484)
Q Consensus 424 ~~i~eL~EQvrDLm 437 (484)
..+.+|...+.++.
T Consensus 175 ~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 175 SKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 193
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.46 E-value=49 Score=38.37 Aligned_cols=44 Identities=34% Similarity=0.423 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHhH
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~---~~~~~~~~~i~eL~EQvrDL 436 (484)
+++++| .|.+.++-+++..|.+.. -.++.+|++|+.|+|-.|+|
T Consensus 502 ev~eal-~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 502 EVEEAL-VNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred HHHHHH-HHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444 344556666666665543 34678899999999999888
No 194
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.40 E-value=63 Score=33.65 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 420 RLRDATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
......|+++.++...+.--|...+++.+
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777776666666543
No 195
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=79.36 E-value=0.79 Score=52.22 Aligned_cols=41 Identities=34% Similarity=0.673 Sum_probs=33.2
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccc-cC---Ccccccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---VLSCQVCRFCH 213 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~-w~---~~~CPvCR~~~ 213 (484)
..|++|++ .+.+ +.+.|+|.||..|+.. |. ...||.||...
T Consensus 455 ~~c~ic~~-~~~~----~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSF----FITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccc----eeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 89999999 5555 6789999999999984 43 45799999643
No 196
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=79.18 E-value=73 Score=31.94 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHhHHHhh
Q 011525 421 LRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDLmf~l 440 (484)
++++-+.+|+.|+.|+.+-+
T Consensus 113 Ek~~a~~~L~~~v~~la~~~ 132 (250)
T PRK14474 113 EKQEFFKALQQQTGQQMVKI 132 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445666677776666655
No 197
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.16 E-value=90 Score=37.23 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=4.9
Q ss_pred ceEEEEEecC
Q 011525 107 RYSVLIKLVD 116 (484)
Q Consensus 107 ~ymvLikF~~ 116 (484)
.+.|-+.|.+
T Consensus 75 ~~~v~~~f~~ 84 (1164)
T TIGR02169 75 EAYVTVTFKN 84 (1164)
T ss_pred eEEEEEEEEc
Confidence 3445556643
No 198
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.93 E-value=46 Score=33.92 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 011525 393 VNSKLIKNQEIMRKK 407 (484)
Q Consensus 393 ln~~L~~nq~~~~~~ 407 (484)
+++.+.++++.+.++
T Consensus 92 ~~~~I~~r~~~l~~r 106 (265)
T COG3883 92 LKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 199
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.85 E-value=98 Score=37.98 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=17.4
Q ss_pred HHHHhhcccccceeEEEEEecCCCCcceEEEEEecCh
Q 011525 81 EFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQ 117 (484)
Q Consensus 81 d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~ 117 (484)
-|..|.=|...+.-=+=+.|.+| ..|+||+..++.
T Consensus 57 sF~~yYLP~~nSyIIYEY~R~~G--~~~~vvl~~~s~ 91 (1201)
T PF12128_consen 57 SFDDYYLPYSNSYIIYEYQREDG--QLCCVVLSRKSD 91 (1201)
T ss_pred hHHHHcCCCCCceEEEeeeccCC--ceeEEEEeecCC
Confidence 35555555544444444455444 246666665533
No 200
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=78.85 E-value=6.7 Score=43.35 Aligned_cols=70 Identities=6% Similarity=0.160 Sum_probs=60.5
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|-.||..++..| ..|..++|+++..-.++-...+.|.+.+.|..-...+||+.|+.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~-G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSEC-GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhc-CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 35679999999999999999999876 46899999997544567789999999999999999999988875
No 201
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.60 E-value=24 Score=39.33 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~ 408 (484)
++..+.+.+..++.++..|..+.++.++.|+++.+.|++.|
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777777776777777777777777665
No 202
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.15 E-value=86 Score=40.23 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=19.6
Q ss_pred HHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 423 DATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
.+.+..|+.||.|+---|+.+++...
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~r~ 1037 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRIRM 1037 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888776644
No 203
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.12 E-value=1.5e+02 Score=35.72 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q 011525 320 FNSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLt--sQLEsQR~yyE~~l~~~~~~ 356 (484)
.+.-++.+..|-..|-. -.|+.||.-+|..|++++.+
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~ 697 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKK 697 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 46677788888888887754
No 204
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=77.92 E-value=18 Score=37.38 Aligned_cols=64 Identities=20% Similarity=0.433 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE------ITSLRLRDATILDLEEQ 432 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~------~~~~~~~~~~i~eL~EQ 432 (484)
+..+.++|..+|+-+++|.+-|..+|+.=....++|...|.+||+-. +...+..+.++.+|.|.
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneE 74 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEE 74 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777766666666666666666666666666532 23333444455555554
No 205
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=77.91 E-value=8.2 Score=39.53 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=57.9
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+.|.|=.+|..+|-.||..|+..+- .|.+++|+++... .++-...+.|.+...|+.-....||..+..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g 72 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIG-EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN 72 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccC-CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECC
Confidence 57899999999999999999998864 8999999995422 245567789999999999999999987754
No 206
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.78 E-value=38 Score=29.87 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 383 CEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 383 l~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
|.+++..|+..+..|+........++.+|+.
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444434333333
No 207
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=77.76 E-value=25 Score=37.11 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 011525 374 QDIQNELDICEEAK 387 (484)
Q Consensus 374 ~~l~~~l~kl~~e~ 387 (484)
.++..+++++-.++
T Consensus 161 ~~~~~qlE~~v~~K 174 (342)
T PF06632_consen 161 NKLLKQLEKFVNAK 174 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 208
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.50 E-value=74 Score=36.49 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 424 ATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+.+..|+|.+.+|--.+.-..++..
T Consensus 275 ~tv~~LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 209
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.42 E-value=59 Score=37.00 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHhH
Q 011525 424 ATILDLEEQIRDL 436 (484)
Q Consensus 424 ~~i~eL~EQvrDL 436 (484)
.++.+|++||.+|
T Consensus 160 sQN~eLK~QL~El 172 (617)
T PF15070_consen 160 SQNRELKEQLAEL 172 (617)
T ss_pred HhHHHHHHHHHHH
Confidence 3566777776655
No 210
>PRK02224 chromosome segregation protein; Provisional
Probab=77.40 E-value=1.1e+02 Score=35.89 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=4.6
Q ss_pred HHhHHHHHHhHH
Q 011525 426 ILDLEEQIRDLT 437 (484)
Q Consensus 426 i~eL~EQvrDLm 437 (484)
+.+|+.++.+|.
T Consensus 288 ~~~le~e~~~l~ 299 (880)
T PRK02224 288 LEELEEERDDLL 299 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 211
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.22 E-value=29 Score=34.56 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
+..+...++.+|+.++.|+..|.++-+.|-.....++++..+|+.
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 344555555666666666655555555555555555655555554
No 212
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=77.19 E-value=71 Score=30.71 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 328 VDEYNRLLATQLETQRQYYESLLAEAKSKRESLI----PETVE------KAVASKMQDIQNELDICEEAKKAVADVNSKL 397 (484)
Q Consensus 328 ~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~----~~~~~------~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L 397 (484)
..||+.++.+.|..+-. |...+.+..++.-..+ .+.+. -.++.|+..|+..++..-..+.+-.+-|..|
T Consensus 34 TEEFSa~IG~vLd~yL~-yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~ 112 (189)
T TIGR02132 34 REEFSALMGNVLDLNLF-YQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPAL 112 (189)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 46788888777766542 4444444433321110 11111 1234455555555444433343333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 398 IKNQEIMRKKFKEIEEREITSLRLR 422 (484)
Q Consensus 398 ~~nq~~~~~~~~~~e~~~~~~~~~~ 422 (484)
-.+...++.++..++++..+.+...
T Consensus 113 ~~~v~~~~q~~~~l~~K~D~~L~ll 137 (189)
T TIGR02132 113 KKDVTKLKQDIKSLDKKLDKILELL 137 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777666555544
No 213
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.09 E-value=43 Score=31.64 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHHhh
Q 011525 391 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLT 447 (484)
Q Consensus 391 ~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~ 447 (484)
+.-|+.|......|+.+++.|+.+...+. +++..++|--+-|+-.++--.++.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~----~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLR----QRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555656655555443332 244555666666666666555543
No 214
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.88 E-value=75 Score=35.61 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESL-IPET--VEKAVASKMQDIQNELDICEEAKKAVA 391 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~-~~~~--~~~~~~~k~~~l~~~l~kl~~e~~~l~ 391 (484)
..+.+....+|..+.+..|-. -|+.|.+++....+- +..| .-..+...+..++.+++.+..+.+.+.
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~----ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~ 132 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPD----IEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELL 132 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988866 777777776533221 1111 111333444445555554444444443
No 215
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.82 E-value=48 Score=38.63 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=8.3
Q ss_pred HHHHHhHHHHHHhHHH
Q 011525 423 DATILDLEEQIRDLTV 438 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf 438 (484)
++..+||+.+-.++.+
T Consensus 350 ddk~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALM 365 (1265)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455666655444433
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.48 E-value=76 Score=30.68 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
.+...++.++..++.....+...-..|......+..++.+++.
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544444444334444444444444444443
No 217
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.26 E-value=1e+02 Score=36.07 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 425 TILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
|-++|=.-||++|-.++.|.|+.+
T Consensus 460 Qcnemv~rir~l~~sle~qrKVeq 483 (1265)
T KOG0976|consen 460 QCNEMVDRIRALMDSLEKQRKVEQ 483 (1265)
T ss_pred HHHHHHHHHHHHhhChhhhcchHH
Confidence 445555678999999999988765
No 218
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.25 E-value=0.37 Score=37.37 Aligned_cols=42 Identities=24% Similarity=0.467 Sum_probs=30.6
Q ss_pred CcCccccCCcCCCCCCceeecCCCc-ccccccc-ccC--Ccccccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHS-FQCSCTA-KWT--VLSCQVCRFCH 213 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~-~w~--~~~CPvCR~~~ 213 (484)
..|.||.|.--++ +.-.|||- .|..|-. .|. ...||+||...
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 6799998865555 56689996 3556655 464 67899999753
No 219
>PRK12705 hypothetical protein; Provisional
Probab=76.16 E-value=1.3e+02 Score=33.57 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=6.7
Q ss_pred CCccCcEEeecCC
Q 011525 453 DGIKGGTVLPVSY 465 (484)
Q Consensus 453 ~ei~~G~v~~~~~ 465 (484)
+-+.+-||.+++-
T Consensus 192 ~~~~e~tvs~v~l 204 (508)
T PRK12705 192 ETASDLSVSVVPI 204 (508)
T ss_pred chhhhheeeeeec
Confidence 3456666654443
No 220
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=76.06 E-value=65 Score=29.70 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
.+++.-..+|+.|+.||-+-+
T Consensus 129 ~ek~~a~~~l~~~v~~lA~~i 149 (156)
T CHL00118 129 AQKEKALKSLEEQVDTLSDQI 149 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888888776544
No 221
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.30 E-value=44 Score=27.36 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 011525 380 LDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 380 l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
|.=|+-|..+|++-|..|...+...+...+.|+.+...+.. +-..-+|-+|.|.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~----e~~~WQerlrsLL 73 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE----EQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33344444445555556666555555555555544332222 2234466666664
No 222
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.19 E-value=0.43 Score=53.11 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=37.9
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
...++..|+||+.+|-...---+.+.|||+.|..|+...-..+|| |..
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCc
Confidence 456788999998777554333478999999999999987788999 654
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.03 E-value=23 Score=39.82 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=10.0
Q ss_pred CCccCcEEeecCCCC
Q 011525 453 DGIKGGTVLPVSYQQ 467 (484)
Q Consensus 453 ~ei~~G~v~~~~~~~ 467 (484)
-.|++|.|+.+-.++
T Consensus 540 ~gik~GDvi~v~~~s 554 (652)
T COG2433 540 YGIKEGDVILVEDPS 554 (652)
T ss_pred hccccCcEEEEEcCC
Confidence 358999997654333
No 224
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=75.02 E-value=66 Score=29.28 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhHHHHH
Q 011525 418 SLRLRDATILDLEEQI 433 (484)
Q Consensus 418 ~~~~~~~~i~eL~EQv 433 (484)
.....+.+|.+|.+||
T Consensus 119 ~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 119 LKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333444455555444
No 225
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.95 E-value=58 Score=33.81 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=12.7
Q ss_pred HHHhHHHHHHhHHHhhhhHHHh
Q 011525 425 TILDLEEQIRDLTVYIEAQKTL 446 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~leaq~ki 446 (484)
.+..|+.++.+|.-.|..++.+
T Consensus 148 ~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666555443
No 226
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.91 E-value=63 Score=29.01 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011525 337 TQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~~~~~ 356 (484)
.++|++..-+...++.+...
T Consensus 26 r~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555533
No 227
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=74.73 E-value=11 Score=41.68 Aligned_cols=69 Identities=12% Similarity=0.250 Sum_probs=58.8
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
..+.|.|-.+|..+|-.||..++..+ ..|..++|+++....++-...+.|.+..+|......+||+.+.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~f-G~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKF-GEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhc-CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 35679999999999999999998876 3588899998654445668899999999999999999999887
No 228
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=74.73 E-value=1.6 Score=33.88 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.7
Q ss_pred eeecCCCccccccccccCCcccccccccc
Q 011525 185 LSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 185 vt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
+.++|+|.-+..|..-+..+.||.|-...
T Consensus 21 ~~~pCgH~I~~~~f~~~rYngCPfC~~~~ 49 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERYNGCPFCGTPF 49 (55)
T ss_pred ccccccceeeccccChhhccCCCCCCCcc
Confidence 57899999999998777788999997654
No 229
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=74.67 E-value=13 Score=28.83 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHh
Q 011525 405 RKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 405 ~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
+.|++.+-...-..+.+....|.+|+..|.|||-.
T Consensus 16 q~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~q 50 (54)
T PF06825_consen 16 QDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 33333333333333444556788888889998863
No 230
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.57 E-value=66 Score=33.57 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---cHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESL---IPE-----------TVEKAVASKMQDIQNELDICEEAKKAV 390 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~---~~~-----------~~~~~~~~k~~~l~~~l~kl~~e~~~l 390 (484)
.......+.|.++.+.+++.+.+.. +.+ .-.......+.+|+.++..++.++..+
T Consensus 165 ~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 165 ERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888888877653321 110 001123344566666666666555544
No 231
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.93 E-value=96 Score=30.64 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=9.7
Q ss_pred HHHhHHHHHHhHHHhhh
Q 011525 425 TILDLEEQIRDLTVYIE 441 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~le 441 (484)
.+..|+.+|-+|---|.
T Consensus 198 ~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666665555544
No 232
>PRK11519 tyrosine kinase; Provisional
Probab=73.74 E-value=1.8e+02 Score=33.62 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011525 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 324 ~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~ 356 (484)
.+.+..+...--..+.+....|.++++.+++.+
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~ 282 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSR 282 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333444455666777777776654
No 233
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.67 E-value=48 Score=27.09 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSL 419 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~ 419 (484)
..+..|+.+++.|+++...+.+-|..|...-+.++..-....++...++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555555555555544444444333344433333
No 234
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=72.65 E-value=13 Score=41.88 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=60.1
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
....+.|.|=.+|..++-.||..++..+ -.|.++||+++..-.++=...+.|.+.++|+.-...+|+..+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~-G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKA-GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhh-CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 3467899999999999999999998776 4688899999643356778999999999999999999887663
No 235
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.45 E-value=94 Score=29.88 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.7
Q ss_pred HHHHhHHHHHH
Q 011525 424 ATILDLEEQIR 434 (484)
Q Consensus 424 ~~i~eL~EQvr 434 (484)
.++.-|+.|+.
T Consensus 177 ~~~~ql~~~l~ 187 (189)
T PF10211_consen 177 KQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHh
Confidence 34555555554
No 236
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=72.36 E-value=15 Score=38.61 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.+|..+|-.||-.+++.+ -.|..++|+++..+ ..+-...+.|.+.+.|++=...+|+..|..
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~f-G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKY-GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhc-CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 46779999999999999999988666 36788999985321 235689999999999999999999987744
No 237
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.26 E-value=54 Score=31.36 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 414 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~ 414 (484)
+......|+.++..+..+.+.....++.|.+....+.-.+..+|++
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666665555555544
No 238
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.95 E-value=45 Score=37.92 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=10.2
Q ss_pred HHHHhHHHHHHhHHHhh
Q 011525 424 ATILDLEEQIRDLTVYI 440 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~l 440 (484)
..+..+++|+.+..-+.
T Consensus 300 ~ll~~~~~q~~~e~~~~ 316 (650)
T TIGR03185 300 NLLDSTKAQLQKEEQSQ 316 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666776666444
No 239
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=71.89 E-value=1.4e+02 Score=31.47 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----------HHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA----KKAVADVNSKL----------IKN 400 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e----~~~l~~ln~~L----------~~n 400 (484)
..-||-.|-..|-++.+++..-..++ ..+--.-...+.++..++.++++| +.....-|+.+ .++
T Consensus 216 ~e~qlK~ql~lY~aKyeefq~tl~KS--NE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~ 293 (391)
T KOG1850|consen 216 VEGQLKEQLALYMAKYEEFQTTLAKS--NELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKE 293 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHH
Confidence 34455555556666655554321110 000011223344455556666655 12222333332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 401 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 401 q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
.+.++.+|+.||. +++..+.+-++|.+-++|+--.+.++.....
T Consensus 294 ~~~lq~kiq~Lek----LcRALq~ernel~~~~~~~e~~v~~k~~~~~ 337 (391)
T KOG1850|consen 294 YETLQKKIQRLEK----LCRALQTERNELNKKLEDLEAQVSAKNAMKD 337 (391)
T ss_pred HHHHHHHHHHHHH----HHHHHHhccccHHHHHHHHhcccchhhhhhh
Confidence 5556667766664 4555556678899999999888888665554
No 240
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=71.84 E-value=75 Score=36.99 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 325 EAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 404 (484)
Q Consensus 325 e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~ 404 (484)
+.+..||..++.+ ||..+.++..+..+.+.+.........+.+.+.+-...++..+...+.++.+.. +.
T Consensus 892 ~~~~~~~d~~~~~--------~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~---e~ 960 (1259)
T KOG0163|consen 892 REMNSEYDVAVKN--------YEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKA---EM 960 (1259)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011525 405 RKKFKEIEEREITSLRLRDATILDLEEQI 433 (484)
Q Consensus 405 ~~~~~~~e~~~~~~~~~~~~~i~eL~EQv 433 (484)
..+-+..|++.+++...-..-+.+++||+
T Consensus 961 e~kRK~eEeqr~~qee~e~~l~~e~q~ql 989 (1259)
T KOG0163|consen 961 ETKRKAEEEQRKAQEEEERRLALELQEQL 989 (1259)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
No 241
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.80 E-value=69 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011525 333 RLLATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 333 ~LLtsQLEsQR~yyE~~l~~~~~~ 356 (484)
+++.-.|+.+|..|+.+...+..+
T Consensus 10 ~~~~~~l~~kr~e~~~~~~~~~~~ 33 (126)
T PF13863_consen 10 FLVQLALDTKREEIERREEQLKQR 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888777776643
No 242
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=71.68 E-value=9.7 Score=28.36 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=36.3
Q ss_pred HhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 84 RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 84 ~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+.++ ..|..+++.++. +..+++.|.+..+|+.-...+||..|+.
T Consensus 3 ~~f~~f-G~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 3 KLFSKF-GEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp HHHTTT-S-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred HHhCCc-ccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 334444 368899998843 3589999999999999999999999865
No 243
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.68 E-value=1e+02 Score=33.89 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=12.5
Q ss_pred HHhHHHHHHhHHHhhhhHHHhhc
Q 011525 426 ILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 426 i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+.++++..+-+-.+||.-..|.+
T Consensus 435 ~~eiQqKnksvsqclEmdk~Lsk 457 (527)
T PF15066_consen 435 MTEIQQKNKSVSQCLEMDKTLSK 457 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh
Confidence 45555555555555555555544
No 244
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.63 E-value=42 Score=39.24 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 011525 341 TQRQYYESLLAEAKS 355 (484)
Q Consensus 341 sQR~yyE~~l~~~~~ 355 (484)
.+..-++..|+++.+
T Consensus 513 ~~~~~~~~li~~l~~ 527 (782)
T PRK00409 513 EDKEKLNELIASLEE 527 (782)
T ss_pred hhhhHHHHHHHHHHH
Confidence 344446666666554
No 245
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.59 E-value=1.3e+02 Score=37.91 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRLLATQLETQ--RQYYESLLAEAK 354 (484)
Q Consensus 322 ~K~e~~~~EY~~LLtsQLEsQ--R~yyE~~l~~~~ 354 (484)
..+.+...+|..-|..--.+| |.+|..+|....
T Consensus 233 ~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~ 267 (1486)
T PRK04863 233 QDMEAALRENRMTLEAIRVTQSDRDLFKHLITEST 267 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhh
Confidence 456667778888888777777 888888887754
No 246
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.49 E-value=48 Score=33.77 Aligned_cols=44 Identities=9% Similarity=0.239 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 414 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~ 414 (484)
.+++.|..+++++..+.+.++.-+..+..+.+.++.+|++++++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333334444444444444444443
No 247
>PRK03918 chromosome segregation protein; Provisional
Probab=71.33 E-value=2.1e+02 Score=33.39 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.0
Q ss_pred eEEEEEe
Q 011525 108 YSVLIKL 114 (484)
Q Consensus 108 ymvLikF 114 (484)
+.|-+.|
T Consensus 71 ~~v~~~f 77 (880)
T PRK03918 71 TEIELKF 77 (880)
T ss_pred EEEEEEE
Confidence 3344444
No 248
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.23 E-value=1.8e+02 Score=36.02 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRL 334 (484)
Q Consensus 321 ~~K~e~~~~EY~~L 334 (484)
.+.++....++..|
T Consensus 828 e~ei~~~~~el~~l 841 (1311)
T TIGR00606 828 NQEKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 249
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.99 E-value=1.1e+02 Score=33.21 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 334 LLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAK 387 (484)
Q Consensus 334 LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~ 387 (484)
.+.+|+.-||.-|+..-+.+.. .+..++.||.+...+.+|+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~-------------~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQE-------------KELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777665555442 2234555566665555543
No 250
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.78 E-value=1.3e+02 Score=37.30 Aligned_cols=12 Identities=42% Similarity=0.338 Sum_probs=4.9
Q ss_pred HHHhHHHHHHhH
Q 011525 425 TILDLEEQIRDL 436 (484)
Q Consensus 425 ~i~eL~EQvrDL 436 (484)
+|.++++++.+|
T Consensus 903 ~~~~~~~~~~~~ 914 (1311)
T TIGR00606 903 EIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHhhhh
Confidence 334444444443
No 251
>PLN03120 nucleic acid binding protein; Provisional
Probab=70.78 E-value=17 Score=36.84 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=54.7
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+.|.|-++|...|-.||..|++.+ ..|.+++|+++.. .+-...+.|.+...|+.-. .+||..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~-G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~g 69 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS-GDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVD 69 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCC
Confidence 4689999999999999999999655 6999999999542 3457788999999998888 489987754
No 252
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=70.67 E-value=2.2 Score=31.88 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=23.0
Q ss_pred CccccCCcCCCCCCceeecCCC-----ccccccccccC----Ccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDH-----SFQCSCTAKWT----VLSCQVC 209 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H-----~Fh~~Cl~~w~----~~~CPvC 209 (484)
|-||++.-+++. .+..||.- .-|..|+..|. ...|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 568887766542 46677853 35999999994 4567776
No 253
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.58 E-value=1.1e+02 Score=30.66 Aligned_cols=68 Identities=13% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHhHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLI-------KNQEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~-------~nq~~~~~~~~~~e~~~~---~~~~~~~~~i~eL~EQvrDLmf 438 (484)
.+.+.++..-..|+.+...+.+.++.|. +.+..+..++.+++.... .....++.+...|+.++...--
T Consensus 40 ek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 40 EKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444442 333344444444433322 2233455666777766655443
No 254
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.45 E-value=1.8e+02 Score=33.21 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 322 ~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~ 355 (484)
+++...+++....|..+++.=-.||++.++.-+.
T Consensus 57 ~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~ 90 (611)
T KOG2398|consen 57 EAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKK 90 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888888877766543
No 255
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=70.45 E-value=4.7 Score=42.82 Aligned_cols=53 Identities=32% Similarity=0.494 Sum_probs=44.2
Q ss_pred CCccCCCCCCCceeeccccccccccCCCCCccccccCCCCCceeeeCCCceeE
Q 011525 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIW 270 (484)
Q Consensus 218 ~~~C~~C~~~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vw 270 (484)
...|.+--..-+++.||.||...=||...+||+.|.-+.+|-..+.+.|-..+
T Consensus 29 ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkf 81 (442)
T KOG2026|consen 29 EKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKF 81 (442)
T ss_pred CCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeE
Confidence 34566666667889999999999999999999999999999999998883333
No 256
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.43 E-value=43 Score=36.04 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 011525 377 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 377 ~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~le 441 (484)
..+.++|++..+.+.+ .-+.....++..+..+|++..=+-.++-..|.|.=|....=|.-||
T Consensus 257 r~R~erLEeqlNd~~e---lHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 257 RYRYERLEEQLNDLTE---LHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444433332 2233344455555555655443333333344444455555566666
No 257
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=70.30 E-value=1.7e+02 Score=31.91 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHhHHHhh
Q 011525 422 RDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~l 440 (484)
+++-+++|+.|+-|+-+-+
T Consensus 110 k~~a~~elr~ei~~lAv~~ 128 (445)
T PRK13428 110 RAQLTRQLRLELGHESVRQ 128 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344566666666665543
No 258
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.17 E-value=27 Score=28.09 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=7.7
Q ss_pred HHHhHHHHHHhHHHhh
Q 011525 425 TILDLEEQIRDLTVYI 440 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~l 440 (484)
+|..|+.|++.|.--|
T Consensus 33 ~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 33 QIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554433
No 259
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=70.16 E-value=1.2e+02 Score=30.14 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAK 354 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~ 354 (484)
+..-|+..+.+-++.|.+++
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae 49 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADAD 49 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544
No 260
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=70.13 E-value=1e+02 Score=29.21 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHHHhHHHhh
Q 011525 419 LRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~l 440 (484)
..++++-+.+|+.|+-|+-+-+
T Consensus 133 ~~ek~~a~~~l~~~i~~lA~~~ 154 (184)
T PRK13455 133 ASAEAAAVKAVRDRAVSVAVAA 154 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566888999999987766
No 261
>PRK02224 chromosome segregation protein; Provisional
Probab=70.11 E-value=2e+02 Score=33.74 Aligned_cols=7 Identities=0% Similarity=-0.016 Sum_probs=2.8
Q ss_pred eEEEEEe
Q 011525 108 YSVLIKL 114 (484)
Q Consensus 108 ymvLikF 114 (484)
+.|-+.|
T Consensus 68 ~~v~~~f 74 (880)
T PRK02224 68 AEIELWF 74 (880)
T ss_pred EEEEEEE
Confidence 3343444
No 262
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.11 E-value=2e+02 Score=35.11 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=8.6
Q ss_pred HHHhHHHHHHhHHHhhh
Q 011525 425 TILDLEEQIRDLTVYIE 441 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~le 441 (484)
+|+++++.+.+|.--++
T Consensus 441 ~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 441 EIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 263
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=70.04 E-value=98 Score=29.08 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=12.1
Q ss_pred HhHHHHHHhHHHhhhhHHHhh
Q 011525 427 LDLEEQIRDLTVYIEAQKTLT 447 (484)
Q Consensus 427 ~eL~EQvrDLmf~leaq~ki~ 447 (484)
.+.+|++-||-+.|- .||.
T Consensus 124 ~~~~~~~i~~~~~i~--~k~~ 142 (155)
T PRK06569 124 TNKSEAIIKLAVNII--EKIA 142 (155)
T ss_pred HhHHHHHHHHHHHHH--HHHh
Confidence 455677777777775 5553
No 264
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=69.96 E-value=2.7 Score=39.48 Aligned_cols=45 Identities=22% Similarity=0.514 Sum_probs=32.4
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCc-----cccccccccC----Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHS-----FQCSCTAKWT----VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~-----Fh~~Cl~~w~----~~~CPvCR~~~ 213 (484)
....+.|-||.+.-++ ...||... -|.+|+..|. ...|+.|.+..
T Consensus 5 s~~~~~CRIC~~~~~~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3467899999877542 23577543 3999999994 56899998754
No 265
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=69.47 E-value=1.9 Score=33.98 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=25.9
Q ss_pred cccccccccccCCCCccCCCCCCCceeecccccccc
Q 011525 205 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 240 (484)
Q Consensus 205 ~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vG 240 (484)
.||.|-.. ...+|..|....+.+.|..||+.|
T Consensus 27 ~CPnCG~~----~I~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 27 LCPNCGEV----IIYRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred eCCCCCCe----eEeechhHHhcCCceECCCCCCcC
Confidence 68888542 246789998889999999999986
No 266
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.38 E-value=1.6e+02 Score=36.09 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHhhhhH
Q 011525 416 ITSLRLRDATILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 416 ~~~~~~~~~~i~eL~EQvrDLmf~leaq 443 (484)
...+..+.+++..|+..|+.+.-+|..+
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 4455667778888888888888777543
No 267
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.36 E-value=81 Score=33.28 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKE 410 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~ 410 (484)
...++|..-..+|++++..|+.--..|.+|.+.+..++++
T Consensus 239 Rt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 239 RTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444455555555555555555667777776666554
No 268
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.30 E-value=2.1e+02 Score=32.58 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEA 386 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e 386 (484)
.++.+++.++.+++.+
T Consensus 428 e~l~~l~~~l~~~~~~ 443 (650)
T TIGR03185 428 EELGEAQNELFRSEAE 443 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 269
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.15 E-value=75 Score=35.03 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=7.7
Q ss_pred HHHHHhHHHHHHhH
Q 011525 423 DATILDLEEQIRDL 436 (484)
Q Consensus 423 ~~~i~eL~EQvrDL 436 (484)
+.++++|++++.+|
T Consensus 151 ~~~~~~~~~~l~~l 164 (525)
T TIGR02231 151 ERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555555
No 270
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.11 E-value=1.9 Score=46.01 Aligned_cols=46 Identities=26% Similarity=0.462 Sum_probs=33.9
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccccc----------CCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW----------TVLSCQVCRF 211 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w----------~~~~CPvCR~ 211 (484)
.-+..|.||.+..-.. .-+.-+||+|.||..|+... ....||-+..
T Consensus 182 ~slf~C~ICf~e~~G~-~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQ-HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCc-ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4567899999866543 34668899999999999853 1356887765
No 271
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=69.08 E-value=67 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011525 401 QEIMRKKFKEIEEREITSLRLRDATILDLEEQI 433 (484)
Q Consensus 401 q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQv 433 (484)
...|+.++-+||....+.....+++|..|+-||
T Consensus 41 m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 41 MQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888887777777778888888776
No 272
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.98 E-value=59 Score=35.26 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvr 434 (484)
+.++|+..|.+++++.+.++.--........+++++|..++.++..+..++.++-.-|-++|+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~ 122 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLA 122 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333322222222333334444444444433333333233334444443
No 273
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.93 E-value=98 Score=34.71 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQE 402 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~ 402 (484)
++..+..+++.++.|++.|+.-|..|.....
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3344444445555555555544444444333
No 274
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=68.73 E-value=18 Score=39.10 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=57.7
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+.|.|-++|..+|..+|..++..|- .|..++|+++.. -.++-.+.+.|.+...|+.-...+||..|..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~ 364 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFG-DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD 364 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46899999999999999999988764 588899988532 2356789999999999999999999988754
No 275
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.57 E-value=64 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
++...|.+..+.+...++.++...+ ...+++.+++.+++.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~----~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLK----YLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4444455555555555544444322 222344555555443
No 276
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=68.25 E-value=1.1e+02 Score=28.76 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 418 SLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 418 ~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
...++..-+.+|+.|+-||-.-+-.
T Consensus 109 Ie~Ek~~Al~elr~eva~Lav~iAs 133 (154)
T PRK06568 109 IQNQKSTASKELQDEFCDEVIKLVS 133 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999999999876643
No 277
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=68.09 E-value=1.6e+02 Score=33.40 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 391 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 391 ~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
+.+-.++++..+.|...|..+|.+.+ .+...+++|++++..---|=+-
T Consensus 302 ~~~~~S~~~e~e~~~~qI~~le~~l~----~~~~~leel~~kL~~~sDYeeI 349 (629)
T KOG0963|consen 302 ERLEASLVEEREKHKAQISALEKELK----AKISELEELKEKLNSRSDYEEI 349 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccHHHH
Confidence 34455777777888888888877544 3445666777666544444333
No 278
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=68.04 E-value=2.7e+02 Score=34.04 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=3.9
Q ss_pred hhcHHHHHhh
Q 011525 117 QLTADEFYSN 126 (484)
Q Consensus 117 ~~~A~~f~~~ 126 (484)
...|-+|.+.
T Consensus 554 a~~~i~~lk~ 563 (1163)
T COG1196 554 AKKAIEFLKE 563 (1163)
T ss_pred HHHHHHHHhh
Confidence 3334444433
No 279
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=67.82 E-value=0.75 Score=54.93 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=38.0
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Cccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~ 212 (484)
++...+.|++|++.+..- . ....|+|.+|+.|...|. .+.||.|...
T Consensus 1149 ~~~~~~~c~ic~dil~~~-~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQ-G--GIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhc-C--CeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 346778999999999843 2 345699999999999996 6889999854
No 280
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.77 E-value=47 Score=30.93 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 323 KVEAIVDEYNRLLATQLETQRQYYE 347 (484)
Q Consensus 323 K~e~~~~EY~~LLtsQLEsQR~yyE 347 (484)
.+..+..+ ..-|..||.+.+...-
T Consensus 73 el~~ld~e-i~~L~~el~~l~~~~k 96 (169)
T PF07106_consen 73 ELAELDAE-IKELREELAELKKEVK 96 (169)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444433 3334444444443333
No 281
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.40 E-value=1.5e+02 Score=30.20 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 402 EIMRKKFKEIEEREITSLRLRDATI 426 (484)
Q Consensus 402 ~~~~~~~~~~e~~~~~~~~~~~~~i 426 (484)
+.+++.|.+||.....+...+.+.|
T Consensus 108 eql~kyiReLEQaNDdLErakRati 132 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATI 132 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhh
Confidence 3444555555555544444444433
No 282
>PRK04406 hypothetical protein; Provisional
Probab=67.31 E-value=52 Score=27.09 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 374 QDIQNELDICEEAKKAVA 391 (484)
Q Consensus 374 ~~l~~~l~kl~~e~~~l~ 391 (484)
..++++|..|+....+.+
T Consensus 7 ~~le~Ri~~LE~~lAfQE 24 (75)
T PRK04406 7 EQLEERINDLECQLAFQE 24 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667776666665543
No 283
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.27 E-value=58 Score=36.59 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHHH------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKRE-SLIPETVEKAV------ASKMQDIQNELDICEEAKKA----VADVNSKLIKNQEI 403 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~-~~~~~~~~~~~------~~k~~~l~~~l~kl~~e~~~----l~~ln~~L~~nq~~ 403 (484)
+..+++.++.+|..++.++-.+.+ .++.+.++.-. -..+++..+++++++++.++ ++.+.+.|....+.
T Consensus 169 ~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~ 248 (555)
T TIGR03545 169 IEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ 248 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456777888888887777743221 11111221100 12344555666666665444 44555556666666
Q ss_pred HHHHHHHHHH
Q 011525 404 MRKKFKEIEE 413 (484)
Q Consensus 404 ~~~~~~~~e~ 413 (484)
++.++.++++
T Consensus 249 ~~~~~~~lk~ 258 (555)
T TIGR03545 249 LKADLAELKK 258 (555)
T ss_pred HHHHHHHHHh
Confidence 6666555543
No 284
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=67.21 E-value=2.4e+02 Score=32.51 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRL 334 (484)
Q Consensus 322 ~K~e~~~~EY~~L 334 (484)
.++..+..++...
T Consensus 237 ~~L~~l~~ql~~a 249 (754)
T TIGR01005 237 QQLAELNTELSRA 249 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 285
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.18 E-value=1.6e+02 Score=30.41 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=6.6
Q ss_pred HHHHhHHHHHH
Q 011525 424 ATILDLEEQIR 434 (484)
Q Consensus 424 ~~i~eL~EQvr 434 (484)
.+|.+|+||+.
T Consensus 407 qkikeleek~~ 417 (445)
T KOG2891|consen 407 QKIKELEEKIK 417 (445)
T ss_pred HHHHHHHHHHH
Confidence 35666766653
No 286
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=67.14 E-value=10 Score=33.88 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHhHHHhhhh
Q 011525 423 DATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~lea 442 (484)
++++++|+..|+||-++|+|
T Consensus 104 E~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 104 EKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999987
No 287
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.13 E-value=2.8 Score=42.54 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=35.3
Q ss_pred CCcCccccCCcCCCCCCc---eeecCCCccccccccccC---Ccccccccccc
Q 011525 167 LPTCPICLERLDPDTSGI---LSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~gi---vt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.|.|-||-+.++.. .|. -.+.|||+||..|..+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~-~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSE-DGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCcccccc-CcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57899999988765 222 246799999999998753 45789999864
No 288
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.86 E-value=1.1e+02 Score=33.16 Aligned_cols=19 Identities=21% Similarity=0.052 Sum_probs=10.5
Q ss_pred hhhHHHHHHHH-HHHHHHHH
Q 011525 321 NSKVEAIVDEY-NRLLATQL 339 (484)
Q Consensus 321 ~~K~e~~~~EY-~~LLtsQL 339 (484)
..|.|..+++. .+.|.-|+
T Consensus 247 rlkqEnlqLvhR~h~LEEq~ 266 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQR 266 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777666 33444333
No 289
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=66.80 E-value=47 Score=31.75 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHhHHHhhh
Q 011525 422 RDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~le 441 (484)
..++++||+-|+.|-...|+
T Consensus 157 vRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 157 VRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777665554
No 290
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=66.65 E-value=18 Score=39.40 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=54.7
Q ss_pred cEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
..|.|..+|..+|..+|...++++ ..|..+.|+++. +++..++.|.+..+|..=...+||..+.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~-G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~ 160 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPY-GKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIY 160 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhcc-CCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 468899999999999999998877 468889998843 3467999999999999999999998764
No 291
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.59 E-value=1.7e+02 Score=35.81 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=12.9
Q ss_pred ccceeecCCCcccccCCCCceeeeeeeE
Q 011525 20 AGFCTVSSTATRSRANPNPKFSERRGLV 47 (484)
Q Consensus 20 ~~~~~~~s~~~~~~~~gnp~v~~~~g~~ 47 (484)
+||--+|+.+.+-|..++=-..+-+-|+
T Consensus 590 ~gf~r~~e~~~l~f~~~~ip~sm~Ydv~ 617 (1758)
T KOG0994|consen 590 KGFVRVPEGTTLEFTVPIIPPSMEYDVL 617 (1758)
T ss_pred cceeecCCCceeeeecCCCCcccccchh
Confidence 3444555555555554433333333333
No 292
>PLN03188 kinesin-12 family protein; Provisional
Probab=66.52 E-value=1.3e+02 Score=37.03 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hcccHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKR--ESLIPETVEK 367 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~--~~~~~~~~~~ 367 (484)
|...||+.|..-|.+-.++..+. ..++.+|++.
T Consensus 1070 lr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~ 1104 (1320)
T PLN03188 1070 LRTELDASRALAEKQKHELDTEKRCAEELKEAMQM 1104 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44557888888887766665432 2344455543
No 293
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=66.49 E-value=2.4 Score=33.45 Aligned_cols=32 Identities=34% Similarity=0.802 Sum_probs=26.5
Q ss_pred cccccccccccCCCCccCCCCCCCceeecccccccc
Q 011525 205 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 240 (484)
Q Consensus 205 ~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vG 240 (484)
.||-|-.. .-.+|..|....+.+.|..||+.|
T Consensus 29 ~CPnCGe~----~I~Rc~~CRk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 29 PCPNCGEV----EIYRCAKCRKLGNPYRCPKCGFEG 60 (61)
T ss_pred eCCCCCce----eeehhhhHHHcCCceECCCcCccC
Confidence 68888643 347899999999999999999986
No 294
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=66.13 E-value=49 Score=35.85 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=5.0
Q ss_pred CChhHHHHhh
Q 011525 77 LSSDEFVRFC 86 (484)
Q Consensus 77 ~~~~d~l~F~ 86 (484)
++..+++.++
T Consensus 25 ~~~~~i~~~L 34 (451)
T PF03961_consen 25 LTLEEILEAL 34 (451)
T ss_pred CCHHHHHHHH
Confidence 3555555554
No 295
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=66.12 E-value=1.1e+02 Score=28.40 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~ 355 (484)
++.-|+..+.+-.+-|.++++
T Consensus 35 i~~~le~R~~~I~~~l~~Ae~ 55 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEAQR 55 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777664
No 296
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=65.99 E-value=1.7 Score=49.19 Aligned_cols=44 Identities=32% Similarity=0.649 Sum_probs=36.8
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccc---cC--Cccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WT--VLSCQVCRFC 212 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~---w~--~~~CPvCR~~ 212 (484)
.-.+.||||++....+ +++.|.|.|+..|+.. |. ...||+|+..
T Consensus 19 ~k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hhhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 4568999999999988 7899999999999884 32 5689999853
No 297
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.70 E-value=30 Score=38.00 Aligned_cols=12 Identities=25% Similarity=0.191 Sum_probs=7.9
Q ss_pred HHHHHHhHHHHH
Q 011525 422 RDATILDLEEQI 433 (484)
Q Consensus 422 ~~~~i~eL~EQv 433 (484)
++.+++.|++|+
T Consensus 109 LEaE~~~Lk~Ql 120 (475)
T PRK13729 109 LGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHH
Confidence 345677777777
No 298
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.61 E-value=1e+02 Score=27.98 Aligned_cols=36 Identities=8% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 376 IQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 411 (484)
Q Consensus 376 l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~ 411 (484)
|.++|+.+.....+..++++...++....+..+.++
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i 101 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI 101 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444444444455555555555555544433
No 299
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=65.61 E-value=1.6e+02 Score=29.79 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~ 355 (484)
..-+++++.+| +.+|+.|-+||+.+..++.+
T Consensus 73 ~~~LeeliNkW----s~el~~Qe~vF~~q~~qvNa 103 (254)
T KOG2196|consen 73 YKTLEELINKW----SLELEEQERVFLQQATQVNA 103 (254)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Confidence 34467777766 57999999999999888763
No 300
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.36 E-value=2.4 Score=44.42 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=31.4
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.|+..||||.-. |+++ +-.||+|..|..|+.++. ...|=.|+...
T Consensus 420 sEd~lCpICyA~---pi~A-vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINA-VFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecc---cchh-hccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 578899999743 3222 456999999999998763 44566665433
No 301
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=65.25 E-value=1.1e+02 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 404 MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 404 ~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
.+..++++-.+.+..++..+++|++.++.|-++-.
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777777777777766543
No 302
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.24 E-value=1.3e+02 Score=33.79 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 011525 375 DIQNELDICEEA 386 (484)
Q Consensus 375 ~l~~~l~kl~~e 386 (484)
++..+++.++++
T Consensus 387 el~e~leeie~e 398 (569)
T PRK04778 387 EILKQLEEIEKE 398 (569)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 303
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.13 E-value=67 Score=33.63 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e 412 (484)
+.-|..+|+++..|+...+.|.+.|+.....++.++.++.
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777777777777777766666666554444
No 304
>PLN02939 transferase, transferring glycosyl groups
Probab=65.09 E-value=99 Score=37.08 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
.+.++|+.|+++|+.-+++. .+.+--..+.+.++.+++.+|++.++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 324 DQNQDLRDKVDKLEASLKEA-NVSKFSSYKVELLQQKLKLLEERLQAS 370 (977)
T ss_pred ccchHHHHHHHHHHHHHHHh-hHhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888877654432 111112234455666666666665433
No 305
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=64.91 E-value=2.5e+02 Score=32.53 Aligned_cols=9 Identities=56% Similarity=0.482 Sum_probs=3.8
Q ss_pred HhHHHhhhh
Q 011525 434 RDLTVYIEA 442 (484)
Q Consensus 434 rDLmf~lea 442 (484)
|-|.-.||+
T Consensus 640 rPLlRQIE~ 648 (961)
T KOG4673|consen 640 RPLLRQIEA 648 (961)
T ss_pred cHHHHHHHH
Confidence 444444443
No 306
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=64.83 E-value=1.2e+02 Score=28.31 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011525 335 LATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~ 356 (484)
+..-|+..+.+..+.|.++.+.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~ 65 (174)
T PRK07352 44 LGKILEERREAILQALKEAEER 65 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778777777777776643
No 307
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.81 E-value=32 Score=32.07 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHhHHHhhhhHH
Q 011525 372 KMQDIQNELDICEEAKKAVA--DVNSKLIKNQEIMRKKFKEIEEREITSLRL----RDATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~--~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~----~~~~i~eL~EQvrDLmf~leaq~ 444 (484)
++..|+.++..++.|++.+. --+..|......+..+++.++++...+... -.+++..+........-.+-.+.
T Consensus 87 el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443332 122334555555555555555555443331 12345555555444444333333
No 308
>PHA03096 p28-like protein; Provisional
Probab=64.61 E-value=2.1 Score=43.88 Aligned_cols=34 Identities=32% Similarity=0.697 Sum_probs=25.2
Q ss_pred CcCccccCCcCCC-----CCCceeecCCCccccccccccC
Q 011525 168 PTCPICLERLDPD-----TSGILSTICDHSFQCSCTAKWT 202 (484)
Q Consensus 168 ptCpICLe~l~~~-----~~givt~~C~H~Fh~~Cl~~w~ 202 (484)
-.|.||+|..-.- .-|+ ...|.|.||..|+..|.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgi-l~~c~h~fc~~ci~~wr 217 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGI-LSEIKHEFNIFCIKIWM 217 (284)
T ss_pred hhcccchhhhhhhccccccccc-cccCCcHHHHHHHHHHH
Confidence 6799999866432 1122 34799999999999995
No 309
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=64.60 E-value=1.2e+02 Score=34.92 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=7.8
Q ss_pred HhHHHHHHhHHHhhh
Q 011525 427 LDLEEQIRDLTVYIE 441 (484)
Q Consensus 427 ~eL~EQvrDLmf~le 441 (484)
..|=.||.||-.-|.
T Consensus 583 ~~lvqqv~dLR~~L~ 597 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTLS 597 (961)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456666655443
No 310
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=64.40 E-value=1.2e+02 Score=27.92 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~ 355 (484)
+..-|+..+.+-.+.|.++++
T Consensus 27 i~~~l~~R~~~I~~~l~~Ae~ 47 (159)
T PRK09173 27 IARSLDARADRIKNELAEARR 47 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888887777664
No 311
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.10 E-value=1.3e+02 Score=34.87 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHhHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQE-------IMRKKFKEIEEREITSLRLR---DATILDLEEQIRDLT 437 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~-------~~~~~~~~~e~~~~~~~~~~---~~~i~eL~EQvrDLm 437 (484)
+...+.+|..+|+.|+++.+-...+-.-...+=+ +++.++...|++.+.+.... =+|.-.|..-+.||-
T Consensus 638 v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRLEdlE 716 (717)
T PF09730_consen 638 VSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLE 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567788888888888887766555544444444 44444444444433222211 134455556666653
No 312
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.96 E-value=1.4e+02 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLE 340 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLE 340 (484)
..+.+++..+|.. +.+.|+
T Consensus 49 kqq~eEleaeyd~-~R~Eld 67 (772)
T KOG0999|consen 49 KQQLEELEAEYDL-ARTELD 67 (772)
T ss_pred HHHHHHHHHHHHH-HHHHHH
Confidence 3456667777753 344444
No 313
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.91 E-value=2e+02 Score=35.21 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=20.8
Q ss_pred ccceeEEEEEecCCCCcceEEEEEecChhcHHHHHh
Q 011525 90 IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYS 125 (484)
Q Consensus 90 ~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~ 125 (484)
++.|+.+..|..|--|. =|||.-.....-.+|..
T Consensus 188 ldslH~mgyVHRDiKPD--NvLld~~GHikLADFGs 221 (1317)
T KOG0612|consen 188 LDSLHSMGYVHRDIKPD--NVLLDKSGHIKLADFGS 221 (1317)
T ss_pred HHHHHhccceeccCCcc--eeEecccCcEeeccchh
Confidence 57888999988776675 34444444444444543
No 314
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.89 E-value=2e+02 Score=31.34 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 388 KAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 388 ~~l~~ln~~L~~nq~~~~~~~ 408 (484)
+++.-+--+|..|+..+++++
T Consensus 219 ~al~llv~tLee~~~~LktqI 239 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQI 239 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666665543
No 315
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=63.74 E-value=1.1e+02 Score=32.96 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccH-------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------
Q 011525 335 LATQLETQRQYYESLLAEAKSKRESLIP-------------ETVEKAVASKMQDIQ----NELDICEEAKKAV------- 390 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~~~~~-------------~~~~~~~~~k~~~l~----~~l~kl~~e~~~l------- 390 (484)
|..|||.-|.--|..-..+....+.-+- .+++..-.+++.+|| .+|++|.+|+.-|
T Consensus 303 L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAA 382 (593)
T KOG4807|consen 303 LRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAA 382 (593)
T ss_pred HHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHhHHHhhhhHHH
Q 011525 391 -------------ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ-------IRDLTVYIEAQKT 445 (484)
Q Consensus 391 -------------~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQ-------vrDLmf~leaq~k 445 (484)
++|.+.|.+-| .+...++.|.......+...+.+.+=|.|| +.-||..+|+...
T Consensus 383 TiSAIEAMKnAhrEEmeRELeKsq-SvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerq 456 (593)
T KOG4807|consen 383 TISAIEAMKNAHREEMERELEKSQ-SVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQ 456 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 316
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=3.1 Score=42.54 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=30.0
Q ss_pred cCccccC-CcCCCCCCceeecCCCcccccccccc---CCcccccccc
Q 011525 169 TCPICLE-RLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRF 211 (484)
Q Consensus 169 tCpICLe-~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~ 211 (484)
.||+|-. ++-.|.--++.-+|+|..|-+|+... ++..||.|-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~ 48 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMV 48 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccc
Confidence 5899973 45444333334499999999999853 4677888754
No 317
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=63.41 E-value=1.9e+02 Score=30.10 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHhHH-HhhhhHHHhhc
Q 011525 424 ATILDLEEQIRDLT-VYIEAQKTLTN 448 (484)
Q Consensus 424 ~~i~eL~EQvrDLm-f~leaq~ki~~ 448 (484)
.++.||++.-.++| ++-|||+.++.
T Consensus 276 aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 276 AELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666654 34466766655
No 318
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.27 E-value=1.6e+02 Score=29.43 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 011525 377 QNELDIC 383 (484)
Q Consensus 377 ~~~l~kl 383 (484)
+....+|
T Consensus 60 ee~~~rL 66 (246)
T PF00769_consen 60 EEEKQRL 66 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 319
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=62.71 E-value=43 Score=30.22 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=8.7
Q ss_pred HHhHHHhhhhHHHhhccCCCCCccCcEEeecCCCC
Q 011525 433 IRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQ 467 (484)
Q Consensus 433 vrDLmf~leaq~ki~~~~~~~ei~~G~v~~~~~~~ 467 (484)
|+|.|-.-+-.++|.++-..+ .++.|++.|...
T Consensus 50 isdkIdkCeC~Kelle~Lk~q--~d~~iip~~~~~ 82 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQ--PDKQIIPSPEED 82 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT----------------
T ss_pred HHHHHHhchhhHHHHHHHhcC--CCCCcCCCCCCC
Confidence 445555555555555542212 266677555443
No 320
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.44 E-value=1.5e+02 Score=36.36 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.2
Q ss_pred CCcEEEEecc--CCCCChhHHHHhhc
Q 011525 64 RSTCIFVVAV--PNYLSSDEFVRFCG 87 (484)
Q Consensus 64 ~~~~l~il~v--P~~~~~~d~l~F~~ 87 (484)
++++.|-.|| |-|+||. +|+-+|
T Consensus 228 dG~V~s~~aVGTPDYISPE-vLqs~~ 252 (1317)
T KOG0612|consen 228 DGTVRSSVAVGTPDYISPE-VLQSQG 252 (1317)
T ss_pred CCcEEeccccCCCCccCHH-HHHhhc
Confidence 5666666555 8888874 666554
No 321
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.43 E-value=68 Score=30.84 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=5.9
Q ss_pred hhhccccCceeec
Q 011525 281 LNQSKADGKLVEM 293 (484)
Q Consensus 281 l~q~k~dgklve~ 293 (484)
++|.-.|-.+|..
T Consensus 35 vlq~LvDDglV~~ 47 (188)
T PF03962_consen 35 VLQSLVDDGLVHV 47 (188)
T ss_pred HHHHHhccccchh
Confidence 3444444445543
No 322
>PRK11020 hypothetical protein; Provisional
Probab=62.38 E-value=74 Score=28.42 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAV 390 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l 390 (484)
..++.|.++||++.....++
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa 24 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAA 24 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677788888877666554
No 323
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.35 E-value=2.6e+02 Score=31.14 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 338 QLETQRQYYESLLAEAK 354 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~ 354 (484)
+.+..+..|+..|.+..
T Consensus 208 ~~~~~~~~~~~~leeae 224 (522)
T PF05701_consen 208 EREQDAEEWEKELEEAE 224 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555544443
No 324
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=62.26 E-value=3.3e+02 Score=32.37 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=3.2
Q ss_pred cCceee
Q 011525 287 DGKLVE 292 (484)
Q Consensus 287 dgklve 292 (484)
+|.+|.
T Consensus 644 ~g~~v~ 649 (1179)
T TIGR02168 644 GYRIVT 649 (1179)
T ss_pred CceEEe
Confidence 555554
No 325
>PHA02862 5L protein; Provisional
Probab=62.15 E-value=3.1 Score=38.52 Aligned_cols=41 Identities=22% Similarity=0.604 Sum_probs=30.1
Q ss_pred CcCccccCCcCCCCCCceeecCCCc-----cccccccccC----Ccccccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHS-----FQCSCTAKWT----VLSCQVCRFCH 213 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~-----Fh~~Cl~~w~----~~~CPvCR~~~ 213 (484)
+.|=||.+.-++. ..||..+ -|..|+..|- ...||.|++..
T Consensus 3 diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 5789999875544 3577532 5999999994 46899998754
No 326
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=62.13 E-value=1.4e+02 Score=27.98 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
.++++-+.+|+.|+-||-+-+
T Consensus 123 ~e~~~a~~el~~ei~~lA~~~ 143 (173)
T PRK13460 123 LAKGKALSQLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888887766
No 327
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=61.93 E-value=1.6e+02 Score=28.72 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHHH
Q 011525 422 RDATILDLEEQIR 434 (484)
Q Consensus 422 ~~~~i~eL~EQvr 434 (484)
.+.+|.||+.|+.
T Consensus 137 YesRI~dLE~~L~ 149 (196)
T PF15272_consen 137 YESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666655554
No 328
>COG5293 Predicted ATPase [General function prediction only]
Probab=61.92 E-value=2.6e+02 Score=30.96 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 339 LETQRQYYESLLAEAK 354 (484)
Q Consensus 339 LEsQR~yyE~~l~~~~ 354 (484)
.|+.+.|+.+.+.+++
T Consensus 333 ~e~R~~yl~~ei~~i~ 348 (591)
T COG5293 333 TEERHDYLQEEIAEIE 348 (591)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666666655
No 329
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=61.88 E-value=1.3e+02 Score=27.55 Aligned_cols=12 Identities=58% Similarity=0.794 Sum_probs=7.3
Q ss_pred HhHHHHHHhHHH
Q 011525 427 LDLEEQIRDLTV 438 (484)
Q Consensus 427 ~eL~EQvrDLmf 438 (484)
-+.++|+.|||-
T Consensus 92 ~~fe~qLE~lm~ 103 (134)
T PF15233_consen 92 LDFEEQLEDLMG 103 (134)
T ss_pred HHHHHHHHHHHH
Confidence 355566777664
No 330
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=61.82 E-value=44 Score=36.10 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIK---NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~---nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
++..+++.+++.|+.+++++...-..+.+ +.+.+..+.+++.+ .++..++++.++++++.+++..|
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE----EIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455566666666665544221111111 12233333333332 23344456677777777776644
No 331
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=61.45 E-value=1.5e+02 Score=27.98 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 011525 374 QDIQNELDICEEA 386 (484)
Q Consensus 374 ~~l~~~l~kl~~e 386 (484)
+.|+.+++.|+.+
T Consensus 92 k~L~~~v~~Le~e 104 (158)
T PF09744_consen 92 KDLQSQVEQLEEE 104 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 332
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.40 E-value=48 Score=29.14 Aligned_cols=44 Identities=18% Similarity=0.396 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e 412 (484)
+++++..+-.++..|+.....+-+.|..|+-.-+.++.++.+++
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555556666555555555554443
No 333
>PRK12705 hypothetical protein; Provisional
Probab=61.33 E-value=2.7e+02 Score=31.07 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 011525 337 TQLETQRQYY 346 (484)
Q Consensus 337 sQLEsQR~yy 346 (484)
..|-.++.|+
T Consensus 23 ~~~~~~~~~~ 32 (508)
T PRK12705 23 VLLKKRQRLA 32 (508)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 334
>PRK02119 hypothetical protein; Provisional
Probab=61.31 E-value=63 Score=26.40 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 375 DIQNELDICEEAKKAV 390 (484)
Q Consensus 375 ~l~~~l~kl~~e~~~l 390 (484)
.+++++..|+....+.
T Consensus 6 ~~e~Ri~~LE~rla~Q 21 (73)
T PRK02119 6 NLENRIAELEMKIAFQ 21 (73)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666665555443
No 335
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.96 E-value=1.8e+02 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 407 KFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
++++|+.....+.+..+.++.++.+=..|+-+
T Consensus 806 ~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~ 837 (1822)
T KOG4674|consen 806 RIKELERELQKLKKKLQEKSSDLRELTNSLEK 837 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444444444444333344444443333333
No 336
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.79 E-value=3.6e+02 Score=34.18 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=5.8
Q ss_pred ceeEeeccc
Q 011525 267 QQIWDYVGD 275 (484)
Q Consensus 267 ~~Vwcy~cd 275 (484)
..|.+|.++
T Consensus 215 ~fl~~yll~ 223 (1486)
T PRK04863 215 RSLRDYLLP 223 (1486)
T ss_pred HHHHHHcCC
Confidence 556677765
No 337
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.72 E-value=2.8e+02 Score=31.01 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 329 DEYNRLLATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 329 ~EY~~LLtsQLEsQR~yyE~~l~~~~~ 355 (484)
..|-.==..+|=+|..+.+.+......
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~ 441 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYA 441 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345555777777777666654
No 338
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.64 E-value=1.3e+02 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 365 VEKAVASKMQDIQNELDICEEAKKAV 390 (484)
Q Consensus 365 ~~~~~~~k~~~l~~~l~kl~~e~~~l 390 (484)
+++.+...++.++.++++.+.....+
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544444443
No 339
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=60.60 E-value=1.6e+02 Score=28.04 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHhHHHhh
Q 011525 421 LRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDLmf~l 440 (484)
.+++-..+|+.+..|+-.-|
T Consensus 139 ~k~~a~~~l~~~a~~lA~~i 158 (181)
T PRK13454 139 IRAGALESVEEVAKDTAEAL 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777665444
No 340
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.55 E-value=1.5e+02 Score=32.08 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR 420 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~ 420 (484)
...|+.++++..+..++++++---+.+....+++++.+.|++.+++.+
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSK 183 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 446777888888887788887777778788888877777776665554
No 341
>PRK04325 hypothetical protein; Provisional
Probab=60.41 E-value=71 Score=26.13 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 375 DIQNELDICEEAKKAV 390 (484)
Q Consensus 375 ~l~~~l~kl~~e~~~l 390 (484)
.++++|..|+....+.
T Consensus 6 ~~e~Ri~~LE~klAfQ 21 (74)
T PRK04325 6 EMEDRITELEIQLAFQ 21 (74)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 342
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=60.35 E-value=6.1 Score=31.20 Aligned_cols=9 Identities=44% Similarity=1.376 Sum_probs=5.7
Q ss_pred ceeeccccc
Q 011525 229 NLWVCLICG 237 (484)
Q Consensus 229 nlWiCL~CG 237 (484)
.-|+||-|-
T Consensus 48 ~eWLCLnCQ 56 (61)
T PF05715_consen 48 KEWLCLNCQ 56 (61)
T ss_pred ceeeeecch
Confidence 357777664
No 343
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=60.16 E-value=1.6e+02 Score=27.92 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011525 335 LATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~ 356 (484)
+..-|+..+.+-.+.+.++++.
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~ 70 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEER 70 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776643
No 344
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=59.96 E-value=1.4e+02 Score=27.18 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHhHHHhh
Q 011525 422 RDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~l 440 (484)
+..-..+|+.++-++-.-+
T Consensus 113 ~~~a~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 113 RKRAREELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344566677766665544
No 345
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=59.86 E-value=3.1 Score=43.25 Aligned_cols=44 Identities=20% Similarity=0.517 Sum_probs=33.0
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCcccccccccc--CCccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR~~ 212 (484)
..-.||||+..-..|. +...-|-+||..|+.+. ....|||--+.
T Consensus 299 ~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 3458999998887772 34445889999999875 36789997663
No 346
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.75 E-value=35 Score=26.60 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=10.7
Q ss_pred HHHHhHHHHHHhHHHhhh
Q 011525 424 ATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~le 441 (484)
+.+++|++.|+|||.--|
T Consensus 28 ~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 28 ESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666667777765433
No 347
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.72 E-value=1.5e+02 Score=34.52 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHh
Q 011525 386 AKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 386 e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
+..+|++.|=+|++.+..++.---++|. .+-.++-..+++.-|.-|+.|++--
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~-~Khei~rl~Ee~~~l~~qlee~~rL 150 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEG-LKHEIKRLEEEIELLNSQLEEAARL 150 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777776666554333332 2233444557778888888777653
No 348
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=59.69 E-value=1.6e+02 Score=31.40 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 396 KLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 396 ~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
.|....+.|..-+..+++..+.-.+..+..++.|++.|.+|
T Consensus 347 ~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 347 DLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445555555555554444444445555555555443
No 349
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.63 E-value=4 Score=44.93 Aligned_cols=60 Identities=25% Similarity=0.680 Sum_probs=46.9
Q ss_pred CccCCCCCCC-ceee-ccccccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhhhh
Q 011525 219 PTCSVCGTVE-NLWV-CLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (484)
Q Consensus 219 ~~C~~C~~~~-nlWi-CL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~Vhr 280 (484)
..|..|+.-. .+.+ |+.|+.++| +.+.|...|....+|-..+++.++..+||.|++||.-
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 44 INCGTCGVLQIRLAVPCLICDSLGC--LSNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYD 105 (492)
T ss_pred ceeEEechhhhhhcccceechhccc--ccccccccccccccccccceeehhhheeccCCcEeec
Confidence 4455555433 2333 899999999 4466788888899999999999999999999999963
No 350
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=59.56 E-value=1e+02 Score=29.28 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011525 396 KLIKNQEIMRKKFKEIEER 414 (484)
Q Consensus 396 ~L~~nq~~~~~~~~~~e~~ 414 (484)
.|.+++..|..+.+++..+
T Consensus 82 ~l~d~inE~t~k~~El~~~ 100 (165)
T PF09602_consen 82 SLNDSINEWTDKLNELSAK 100 (165)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 351
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=59.49 E-value=21 Score=31.25 Aligned_cols=100 Identities=10% Similarity=0.083 Sum_probs=53.1
Q ss_pred ceeecCCCccc-ccC-CCCceeeeeeeEEEccCCCCCcCC---CCCCCCcEEEEeccCCCCChhHHHHhhcccccceeEE
Q 011525 22 FCTVSSTATRS-RAN-PNPKFSERRGLVHLFRGTSQSYQQ---NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96 (484)
Q Consensus 22 ~~~~~s~~~~~-~~~-gnp~v~~~~g~~hl~r~~~~~~~~---~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~ 96 (484)
...|...+.+- |.. -++..+.+.|.+||.++.+....- ...+-..+++=..|...|.+.. ....-..+
T Consensus 10 ~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~-------~~~~~~~~ 82 (122)
T PF00638_consen 10 EILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKP-------MKGSEKSL 82 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEE-------STTTTTEE
T ss_pred EEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecc-------cccCCcEE
Confidence 33444444553 332 368999999999999876542210 0011233444445666666532 11111222
Q ss_pred EEEe---cCCCCcceEEEEEecChhcHHHHHhhhc
Q 011525 97 IFIR---NDAMEDRYSVLIKLVDQLTADEFYSNLN 128 (484)
Q Consensus 97 riir---~~~~pn~ymvLikF~~~~~A~~f~~~~n 128 (484)
.++. .+..+.....+|+|.+.+.|++|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~ 117 (122)
T PF00638_consen 83 VWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIE 117 (122)
T ss_dssp EEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHH
T ss_pred EEEeccccCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 2222 1222345688899999999999998873
No 352
>PRK00846 hypothetical protein; Provisional
Probab=59.41 E-value=1e+02 Score=25.63 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAV 390 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l 390 (484)
+-+.++++|..|+....+.
T Consensus 7 ~~~~le~Ri~~LE~rlAfQ 25 (77)
T PRK00846 7 RDQALEARLVELETRLSFQ 25 (77)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3345566666666655543
No 353
>PRK00295 hypothetical protein; Provisional
Probab=59.29 E-value=74 Score=25.62 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 011525 377 QNELDICEEAKKAV 390 (484)
Q Consensus 377 ~~~l~kl~~e~~~l 390 (484)
+++|..|+....+.
T Consensus 4 e~Ri~~LE~kla~q 17 (68)
T PRK00295 4 EERVTELESRQAFQ 17 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544443
No 354
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.27 E-value=53 Score=35.42 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHhHHHhh
Q 011525 419 LRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~l 440 (484)
++..+++..++++++.+++..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 85 LTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344456667777777776654
No 355
>PLN02320 seryl-tRNA synthetase
Probab=59.19 E-value=89 Score=34.75 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 370 ASKMQDIQNELDICEEAKKAVA-DVNSKLIK-NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~-~ln~~L~~-nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
-.+..+++.+++.++.|++++. ++.....+ +.+.+..+.+++ ++.++..+++..++++++.+++..|
T Consensus 99 d~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~l----k~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 99 YENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNL----KEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566677777777665542 22221100 112222222222 2233444456667777777777654
No 356
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.10 E-value=75 Score=25.87 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=7.6
Q ss_pred HHHhHHHHHHhHHH
Q 011525 425 TILDLEEQIRDLTV 438 (484)
Q Consensus 425 ~i~eL~EQvrDLmf 438 (484)
+|..|+.|++-|.-
T Consensus 37 ~I~~L~~~l~~L~~ 50 (72)
T PRK02793 37 EMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555556555543
No 357
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.87 E-value=90 Score=32.85 Aligned_cols=6 Identities=50% Similarity=0.656 Sum_probs=3.6
Q ss_pred cCcEEe
Q 011525 456 KGGTVL 461 (484)
Q Consensus 456 ~~G~v~ 461 (484)
++|..+
T Consensus 94 kNGlyL 99 (330)
T PF07851_consen 94 KNGLYL 99 (330)
T ss_pred CCCccc
Confidence 467664
No 358
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=58.84 E-value=1.7e+02 Score=30.86 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 389 AVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 389 ~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
.+++.|.+|+...+.+.....+.|++...+
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 334455555555555554444444443333
No 359
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.79 E-value=1.3e+02 Score=26.60 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=7.0
Q ss_pred HHhHHHHHHhHHHhhhh
Q 011525 426 ILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 426 i~eL~EQvrDLmf~lea 442 (484)
|.||+-+|-|+.-.|+.
T Consensus 60 ~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 60 IAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 360
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.68 E-value=2.3e+02 Score=32.67 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHhHHHhhhhH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKN-QEIM---RKKFKEIEEREITSLR--LRDATILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n-q~~~---~~~~~~~e~~~~~~~~--~~~~~i~eL~EQvrDLmf~leaq 443 (484)
.+++..|++++..++.+...++.....+.+. ++.| ..++.++++......+ ..+++...|--+|.||--.|...
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEE
Confidence 3455666777776666665555444444333 2222 2223333332222221 22245556666666666555444
Q ss_pred HHh
Q 011525 444 KTL 446 (484)
Q Consensus 444 ~ki 446 (484)
-.+
T Consensus 320 CRv 322 (670)
T KOG0239|consen 320 CRV 322 (670)
T ss_pred EEe
Confidence 333
No 361
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=58.38 E-value=1.2e+02 Score=26.01 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 386 AKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 386 e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
+-..+.++..+|..+.+.+..+.++++... ..+...+++|..|++-+.-|=-|.
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l-~~Id~Ie~~V~~LE~~v~~LD~ys 89 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEELQPYL-QQIDQIEEQVTELEQTVYELDEYS 89 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666665555554322 223344456666666555554444
No 362
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=2.2e+02 Score=30.90 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSK 396 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~ 396 (484)
...+++--+++++|.+.+++++..
T Consensus 109 rtq~qq~~e~~erEv~~l~~llsr 132 (542)
T KOG0993|consen 109 RTQLQQNEEKLEREVKALMELLSR 132 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555666777777666544
No 363
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=58.30 E-value=1.2e+02 Score=25.81 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=5.0
Q ss_pred HHHHhHHHHHHhH
Q 011525 424 ATILDLEEQIRDL 436 (484)
Q Consensus 424 ~~i~eL~EQvrDL 436 (484)
+++..|+.++..|
T Consensus 79 ~q~~~l~~~l~~l 91 (127)
T smart00502 79 QQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 364
>PLN02678 seryl-tRNA synthetase
Probab=58.24 E-value=57 Score=35.71 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHhHHHhh
Q 011525 419 LRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~l 440 (484)
++..+++..+|++++.++|.-|
T Consensus 87 i~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 87 ITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556677777777766644
No 365
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.22 E-value=4.1e+02 Score=32.18 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRL 334 (484)
Q Consensus 321 ~~K~e~~~~EY~~L 334 (484)
..+++.+..||..|
T Consensus 683 ~~~~~~~q~el~~l 696 (1174)
T KOG0933|consen 683 QKELRAIQKELEAL 696 (1174)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666666654
No 366
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=57.68 E-value=75 Score=35.76 Aligned_cols=130 Identities=21% Similarity=0.260 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-hcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLATQ--LETQRQYYESLLAEAKSKR-ESL-IPETVEKAVASKMQDIQNELDICEEAKKAVADVNS 395 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQ--LEsQR~yyE~~l~~~~~~~-~~~-~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~ 395 (484)
.-+.++++++|-++||..- |-==+ -++|+++.+=. ++. +...++ +....-.+|++++.++++|++.++...
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVK---NDLIakVDeL~~E~~vLrgEle-a~kqak~Klee~i~elEEElk~~k~ea- 373 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVK---NDLIAKVDELTCEKDVLRGELE-AVKQAKLKLEEKIRELEEELKKAKAEA- 373 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHH---HHHHHHHHhhccHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3577899999988887542 11111 13333332110 111 111222 222333466778888888877665422
Q ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhHHHhhhhHHHhhccCCCCCccCcEEe
Q 011525 396 KLIKNQEI-----------MRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 461 (484)
Q Consensus 396 ~L~~nq~~-----------~~~~~~~~e~~~~~~~~---~~~~~i~eL~EQvrDLmf~leaq~ki~~~~~~~ei~~G~v~ 461 (484)
..++|+. .++++...|= ++.+. +..+..-||+|-||=- |.+..-...+.-+|-+-|+|+
T Consensus 374 -~~ar~~~~~~e~ddiPmAqRkRFTRvEM--aRVLMeRNqYKErLMELqEavrWT----EMiRAsre~p~vqeKK~s~IW 446 (832)
T KOG2077|consen 374 -EDARQKAKDDEDDDIPMAQRKRFTRVEM--ARVLMERNQYKERLMELQEAVRWT----EMIRASRENPAVQEKKRSSIW 446 (832)
T ss_pred -HHHHHhhcccccccccHHHHhhhHHHHH--HHHHHHHhHHHHHHHHHHHHHhHH----HHHHHhhcCchhhhhccccHH
Confidence 2232222 2334433321 22222 3346788889888743 333332232334566777774
No 367
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.47 E-value=2.4e+02 Score=29.26 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLATQLETQRQYYE 347 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQLEsQR~yyE 347 (484)
+.+|++.+...|+.++..--.-||.+..
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~ 47 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKK 47 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999877777766554
No 368
>PHA00626 hypothetical protein
Probab=57.46 E-value=6.5 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=25.3
Q ss_pred cccccccccccCCCCccCCCCCCCceeecccccccc
Q 011525 205 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 240 (484)
Q Consensus 205 ~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vG 240 (484)
.||-|-.. +-.+|..|....+.+.|-.||+..
T Consensus 2 ~CP~CGS~----~Ivrcg~cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 2 SCPKCGSG----NIAKEKTMRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCc----eeeeeceecccCcceEcCCCCCee
Confidence 58999653 245788898888999999999864
No 369
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.46 E-value=2.2e+02 Score=28.71 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEI 403 (484)
Q Consensus 324 ~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~ 403 (484)
+-+...-|...+..++.....-|.+.|.+... +..+++ .+-.+...+|..++++.+-+...+.-...+....++
T Consensus 115 ~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~-----y~~slK-~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~ 188 (243)
T cd07666 115 MASCIDRCCKATDKRMKGLSEQLLPVIHEYVL-----YSETLM-GVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEK 188 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33344444455555555555556665555431 122222 222333455555555544433332222345555566
Q ss_pred HHHHHHHHHHH
Q 011525 404 MRKKFKEIEER 414 (484)
Q Consensus 404 ~~~~~~~~e~~ 414 (484)
|..++++..+.
T Consensus 189 ~e~kve~a~~~ 199 (243)
T cd07666 189 LEDKVECANNA 199 (243)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 370
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=57.29 E-value=2.3e+02 Score=28.99 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 011525 391 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 391 ~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~le 441 (484)
+++.+.|.+..+.+.+......+. ...++...++..+++.-..||.+|.
T Consensus 130 qql~~sL~~r~~elk~~~~~~se~--rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 130 QQLLESLNKRHEELKNQVETFSES--RVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667766666666554333322 2223334556677777777777663
No 371
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=57.22 E-value=1.3e+02 Score=26.04 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 011525 335 LATQLETQRQYYESLLAEAKSKRE 358 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~ 358 (484)
|..-|+.|...|.+++.-+.++.+
T Consensus 6 L~~~L~~~~~~~~~L~~ll~~e~~ 29 (143)
T PF05130_consen 6 LIELLEEQIELLQELLELLEEERE 29 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888777776554
No 372
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.20 E-value=1.5e+02 Score=31.00 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 397 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
|.+..+.+..+.+.+.+...+..+..++++..|+|.+.++|-
T Consensus 357 lke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 357 LKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444454444444444444556677888888777664
No 373
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.76 E-value=2.9e+02 Score=30.56 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=14.1
Q ss_pred HHHHhHHHHHHhHHHhhhh
Q 011525 424 ATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~lea 442 (484)
.-+.-|+|||.+.--.++.
T Consensus 140 ~ll~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 140 SLLSPLREQLDGFRRQVQD 158 (475)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 4568889999888766653
No 374
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=56.58 E-value=86 Score=32.55 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=9.3
Q ss_pred HHHHHHHHHhHHHHHH
Q 011525 419 LRLRDATILDLEEQIR 434 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvr 434 (484)
...-++|+.||+.+|.
T Consensus 238 ~~MsE~Ql~ELRadIK 253 (302)
T PF07139_consen 238 SQMSEEQLAELRADIK 253 (302)
T ss_pred hhcCHHHHHHHHHHHH
Confidence 3344567777776554
No 375
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=56.52 E-value=1.5e+02 Score=32.68 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=16.0
Q ss_pred cccccceeEEEEEecCCC----CcceEEE
Q 011525 87 GSHIDHVEELIFIRNDAM----EDRYSVL 111 (484)
Q Consensus 87 ~~~~~~i~~~riir~~~~----pn~ymvL 111 (484)
-|....|+.+||+|.-+. -||+-+|
T Consensus 228 ~PvVCnVEQVRiLRgLGAIQPGVNRCKLi 256 (641)
T KOG3915|consen 228 TPVVCNVEQVRILRGLGAIQPGVNRCKLI 256 (641)
T ss_pred eeeeechHHHHHHhccccccCCccceeee
Confidence 466788889999984321 2566544
No 376
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.35 E-value=2.5e+02 Score=29.36 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYES 348 (484)
Q Consensus 335 LtsQLEsQR~yyE~ 348 (484)
|-.+..++-.||+-
T Consensus 199 Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 199 LCKWVRAMVKYYEV 212 (344)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666677764
No 377
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=56.09 E-value=2.3e+02 Score=28.51 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.1
Q ss_pred HHhHHHHHHhHHHhhhhHHHhhc
Q 011525 426 ILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 426 i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
|.+=-+++++|--|++||-...+
T Consensus 207 il~~~e~i~~L~~fv~AQl~Yh~ 229 (242)
T cd07600 207 VLDNPEPLQLLKELVKAQLAYHK 229 (242)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Confidence 34446899999999999865544
No 378
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=56.04 E-value=3e+02 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR 405 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~ 405 (484)
.+..+.|+.++..|.+++..+..-..+|...++.++
T Consensus 143 t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655555555555555554
No 379
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=56.01 E-value=6.4 Score=33.71 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=27.5
Q ss_pred CccccccccccccCCC-CccCCCCCCCceeeccccccccc
Q 011525 203 VLSCQVCRFCHQQDER-PTCSVCGTVENLWVCLICGFVGC 241 (484)
Q Consensus 203 ~~~CPvCR~~~~~~~~-~~C~~C~~~~nlWiCL~CG~vGC 241 (484)
+..||+|-....+-.. ..|.+|......--|.+||.+|=
T Consensus 27 DgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV 66 (110)
T KOG1705|consen 27 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGV 66 (110)
T ss_pred CCcccccccccccceeeeeehhcCCccccCceEEecCCcc
Confidence 5678888765544333 35888888777778888888873
No 380
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.92 E-value=2e+02 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~ 355 (484)
+..-|+..+.+-.+-|.++++
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~ 98 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAAR 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655553
No 381
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.83 E-value=72 Score=32.14 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEI------------------------------------------------- 403 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~------------------------------------------------- 403 (484)
+++|+.++..++.+..+.++||+.|..++..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 404 ----------MRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 404 ----------~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
++.+..+||++...... +|..|+.+|..|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~----~~~~L~~Ev~~L 119 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQ----TISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
No 382
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.81 E-value=2.2e+02 Score=34.85 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=7.0
Q ss_pred HHhHHHHHHhHH
Q 011525 426 ILDLEEQIRDLT 437 (484)
Q Consensus 426 i~eL~EQvrDLm 437 (484)
++.|..++.|+-
T Consensus 335 ~~~l~~~IAdlR 346 (1109)
T PRK10929 335 PQQLDTEMAQLR 346 (1109)
T ss_pred cchhHHHHHHHH
Confidence 455566666664
No 383
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=55.77 E-value=1.1e+02 Score=28.54 Aligned_cols=12 Identities=33% Similarity=0.246 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 011525 397 LIKNQEIMRKKF 408 (484)
Q Consensus 397 L~~nq~~~~~~~ 408 (484)
|++..+.|+.++
T Consensus 56 Lk~~i~~lq~~~ 67 (155)
T PF06810_consen 56 LKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 384
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.66 E-value=1.1e+02 Score=24.95 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 395 SKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 395 ~~L~~nq~~~~~~~~~~e 412 (484)
+...+.+..|+.-+..+.
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq 34 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQ 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445554444433
No 385
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.65 E-value=3.8 Score=46.93 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCCCcCccccCCcCCCCCCceeec---CCCccccccccccC--------Cccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTAKWT--------VLSCQVCRFCHQ 214 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~---C~H~Fh~~Cl~~w~--------~~~CPvCR~~~~ 214 (484)
.+..+|++|.-.+.+++.|....+ |+|.||-.||..|. ...|+.|..+..
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 456689999988888766666555 99999999999994 457888877664
No 386
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.46 E-value=2.7e+02 Score=29.15 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=19.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 319 LFNSKVEAIVDEYNRLLATQLETQRQYYESLLA 351 (484)
Q Consensus 319 ~~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~ 351 (484)
-...++.++..+ +..|..+|+.=|.---.+..
T Consensus 24 ~l~~~~~sL~qe-n~~Lk~El~~ek~~~~~L~~ 55 (310)
T PF09755_consen 24 QLRKRIESLQQE-NRVLKRELETEKARCKHLQE 55 (310)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 346677787776 45666677665554444333
No 387
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.25 E-value=2e+02 Score=32.02 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 011525 347 ESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE----------I 416 (484)
Q Consensus 347 E~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~----------~ 416 (484)
|..+-...+..-......-.+-+.-++..++.+|.+..++.....+-|..|......++++++.+.-+. +
T Consensus 188 Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 188 ETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHhh-hhHHHhhcc
Q 011525 417 TSLRLRDATILDLEEQIRDLTVYI-EAQKTLTNM 449 (484)
Q Consensus 417 ~~~~~~~~~i~eL~EQvrDLmf~l-eaq~ki~~~ 449 (484)
..-+...++..||+++-..+|..+ ||++.|+..
T Consensus 268 da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 268 DAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 388
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.13 E-value=4.5e+02 Score=31.90 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.0
Q ss_pred EEecChhcHHHHHhhhcCCcC
Q 011525 112 IKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 112 ikF~~~~~A~~f~~~~ng~~F 132 (484)
|+.++..++...--.-.|+-|
T Consensus 529 i~vkd~~~~tAle~~aGgrLy 549 (1174)
T KOG0933|consen 529 IKVKDRSYATALETTAGGRLY 549 (1174)
T ss_pred heeCcchHHHHHHHHhcCcce
Confidence 333333333333333344433
No 389
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=55.11 E-value=2.1e+02 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 324 ~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~ 355 (484)
+|.....-...|.++.+.=..|++.-+.+++.
T Consensus 27 ~e~~~d~~~~~l~~~~~qa~~y~~~~~~elR~ 58 (208)
T PF14644_consen 27 FEQCADNLVQKLQSYQEQADEYHNSCLQELRN 58 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555544455566666666553
No 390
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.98 E-value=1.8e+02 Score=34.07 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 338 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREIT 417 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~ 417 (484)
.|++.+.-.|..|....++.+ ....++++++.+|..|+.++..+++.|..+...++.....++.++-+...
T Consensus 600 ~le~eK~~Le~~L~~~~d~lE---------~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 600 KLESEKEELEMELASCQDQLE---------SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred H---HHHHHHHHHhHHHHHHh
Q 011525 418 S---LRLRDATILDLEEQIRD 435 (484)
Q Consensus 418 ~---~~~~~~~i~eL~EQvrD 435 (484)
+ .+....+|.-|+++|.+
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 391
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=54.93 E-value=1.9e+02 Score=32.32 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKKAV--------ADVNSKLIKN 400 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~------~~~~k~~~l~~~l~kl~~e~~~l--------~~ln~~L~~n 400 (484)
|.+-|..|++-+..+|.++..+.+..+.+.+++ .+...+..++++++.+-.+.+.+ .++|-.+...
T Consensus 370 Ls~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE 449 (531)
T PF15450_consen 370 LSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTE 449 (531)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHH
Q 011525 401 QEIMRKKFKEIEEREITSLRLRD--------ATILDLEEQI 433 (484)
Q Consensus 401 q~~~~~~~~~~e~~~~~~~~~~~--------~~i~eL~EQv 433 (484)
-+.....|+.+.++.+.++...+ ..|++++-+|
T Consensus 450 ~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l 490 (531)
T PF15450_consen 450 GKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKL 490 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHH
No 392
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=54.89 E-value=1.7e+02 Score=26.64 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHhHHHhh
Q 011525 422 RDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~l 440 (484)
+..-..+|+.|+-+|--.|
T Consensus 116 ~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 116 KQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3344555666666555444
No 393
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=54.83 E-value=2.8e+02 Score=32.95 Aligned_cols=105 Identities=20% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH-
Q 011525 338 QLETQRQYYESLLAEAKSKRESLIPETVE--------------------------KAVASKMQDIQNELDICEEAKKAV- 390 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~~~~~~~~~~~~~--------------------------~~~~~k~~~l~~~l~kl~~e~~~l- 390 (484)
||++++++.|++++.++...+.--++--+ ++..++..+|..++..|.++....
T Consensus 568 ~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~ 647 (984)
T COG4717 568 QLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFE 647 (984)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 391 -----------------------ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 391 -----------------------~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
..++......-++|+..++....+-+++.....++++.-+.+|.||.-+..+
T Consensus 648 ~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~ 722 (984)
T COG4717 648 ERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTA 722 (984)
T ss_pred HHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 394
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=54.68 E-value=16 Score=34.71 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=51.3
Q ss_pred cEEEEeccCCCCChhHHHHhhcccc-cce--eEEEEEe--cCCCCcceE-EEEEecChhcHHHHHhhhcCCcCCCCcccc
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHI-DHV--EELIFIR--NDAMEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPAEAEV 139 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~-~~i--~~~riir--~~~~pn~ym-vLikF~~~~~A~~f~~~~ng~~F~sle~e~ 139 (484)
.=|.|=-+|..||-.+|+.-++++. +.+ ..+.-.. ...-++.|+ +-|.|.+.....+|...|+|..|-.-.
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k--- 84 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK--- 84 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT---
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC---
Confidence 4577788999999999999777743 332 2333222 122234555 778999999999999999999994321
Q ss_pred eeeEEEeEEEEeec
Q 011525 140 CHMLFMLSVEYTEL 153 (484)
Q Consensus 140 C~~v~v~~v~~~~~ 153 (484)
+ ..+...|++...
T Consensus 85 g-~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 G-NEYPAVVEFAPY 97 (176)
T ss_dssp S--EEEEEEEE-SS
T ss_pred C-CCcceeEEEcch
Confidence 2 235666777654
No 395
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=54.67 E-value=1.1e+02 Score=24.44 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKN----QEIMRKKFKEIEEREITSLRLRDATILDLE 430 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n----q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~ 430 (484)
..+++.++.++.........+.+....|... ...++.++..+..+...+.....+....|+
T Consensus 40 ~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 40 LKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3466666666666666666666555566433 344555566666655555444444444443
No 396
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.64 E-value=1.4e+02 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 338 QLETQRQYYESLLAEAK 354 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~ 354 (484)
||..|...|+..+..+.
T Consensus 3 ~l~~~~~~l~~~i~~l~ 19 (129)
T cd00890 3 ELAAQLQQLQQQLEALQ 19 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 397
>PLN03121 nucleic acid binding protein; Provisional
Probab=54.64 E-value=49 Score=33.30 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+.+|-|-.++...|..||-.|++. .-.|.+++|+++... .-...+.|.+..+| +-....||..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~et--~gfAfVtF~d~~aa-etAllLnGa~l~d 70 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSGEY--ACTAYVTFKDAYAL-ETAVLLSGATIVD 70 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCCCc--ceEEEEEECCHHHH-HHHHhcCCCeeCC
Confidence 4578999999999999999999865 678999999996543 24788999998888 4555788887744
No 398
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.62 E-value=1.7e+02 Score=32.28 Aligned_cols=13 Identities=8% Similarity=-0.095 Sum_probs=7.9
Q ss_pred ccceeEEEEEecC
Q 011525 90 IDHVEELIFIRND 102 (484)
Q Consensus 90 ~~~i~~~riir~~ 102 (484)
+-.+...|.+|+.
T Consensus 91 ~~s~~DpRplrdk 103 (622)
T COG5185 91 HLSNRDPRPLRDK 103 (622)
T ss_pred hcccCCCcccccc
Confidence 4455667777743
No 399
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.41 E-value=76 Score=30.01 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 375 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 422 (484)
Q Consensus 375 ~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~ 422 (484)
.++.+.++++++...++.-|+.|.+..+.+..+...+++..+.++.-+
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666665555433
No 400
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=54.30 E-value=3.3e+02 Score=29.93 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hcccHHHHHHHH------HHHHHHHHHHHHHH
Q 011525 332 NRLLATQLETQRQYYESLLAEAKSKR--ESLIPETVEKAV------ASKMQDIQNELDIC 383 (484)
Q Consensus 332 ~~LLtsQLEsQR~yyE~~l~~~~~~~--~~~~~~~~~~~~------~~k~~~l~~~l~kl 383 (484)
+.=|..-||+.|..-|..-.++..+. ..++.+|++.++ -....+||++...|
T Consensus 297 teeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~L 356 (488)
T PF06548_consen 297 TEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDL 356 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999998777766432 334555665433 23344555555444
No 401
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=54.19 E-value=25 Score=40.12 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=54.8
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++|.+-.+|...|..|++.|+..+.-.=-.|++-++| ++| .--..+.|.+++.|..=....++++..+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~p-TGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVP-TGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCc-ccceeEeecCHHHHHhhhhccccCcccc
Confidence 45999999999999999999999997777777777755 555 3345568999999988888888876533
No 402
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.01 E-value=2.3e+02 Score=27.96 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQYY 346 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~yy 346 (484)
+.|++.+-......-...-+..+.|=
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444444444444444443
No 403
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=53.91 E-value=1.9e+02 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011525 335 LATQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~ 356 (484)
++.-|+..+.+-.+.+.++.+.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~ 68 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEK 68 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777666643
No 404
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.86 E-value=4.5e+02 Score=31.33 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 011525 326 AIVDEYNRLLATQLETQRQY--YESLLA 351 (484)
Q Consensus 326 ~~~~EY~~LLtsQLEsQR~y--yE~~l~ 351 (484)
-+..|...|+.+|.+.|+.- +|+...
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~ 417 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAEN 417 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35556666666666655555 444433
No 405
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=53.82 E-value=1.9e+02 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
.+++.-+.+|+.++.||-.-+
T Consensus 125 ~ek~~a~~~l~~ei~~lA~~~ 145 (173)
T PRK13453 125 SQKERAIADINNQVSELSVLI 145 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888887776655
No 406
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=53.71 E-value=98 Score=33.56 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=8.1
Q ss_pred HHHHhHHHHHHhHHHhhh
Q 011525 424 ATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~le 441 (484)
+++++|++++..|.-.|+
T Consensus 389 ~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 389 EELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 407
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=53.55 E-value=1.2e+02 Score=30.66 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 377 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 377 ~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
..++.+++-+.+.|.+.|+.|+..-+.++.+-+.|-.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~ 125 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLA 125 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666677777788888887776777666555443
No 408
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=53.43 E-value=31 Score=37.37 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=50.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccc-----------ccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSH-----------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~-----------~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
.....|.|=++|..+|-.||..|+..+ ...|..+.+.+ ++-...+.|.+.+.|.... .+||..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 456789999999999999999998764 23445555444 2235899999999999887 589887
Q ss_pred CCC
Q 011525 132 FSP 134 (484)
Q Consensus 132 F~s 134 (484)
|+.
T Consensus 247 ~~g 249 (509)
T TIGR01642 247 YSN 249 (509)
T ss_pred eeC
Confidence 765
No 409
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=53.33 E-value=2e+02 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~ 355 (484)
+..-|+..+..-.+.+.++++
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~ 63 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHS 63 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655553
No 410
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=53.32 E-value=12 Score=42.77 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=35.9
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccCCccccccccccccCCCCccCCCCCCC
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVE 228 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~~~~~~~C~~C~~~~ 228 (484)
.||-|.....+ ++.||..|-.+.....||.|-+.. +++...|..||..-
T Consensus 3 ~Cp~Cg~~n~~----------~akFC~~CG~~l~~~~Cp~CG~~~-~~~~~fC~~CG~~~ 51 (645)
T PRK14559 3 ICPQCQFENPN----------NNRFCQKCGTSLTHKPCPQCGTEV-PVDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCcCCC----------CCccccccCCCCCCCcCCCCCCCC-CcccccccccCCcc
Confidence 58888765443 457888886665556899998854 56667899999875
No 411
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.19 E-value=1.2e+02 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRK 406 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~ 406 (484)
.....|+.+++.+.+....-...|+.|...-+....
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~ 40 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAER 40 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665555666666554444333
No 412
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.07 E-value=4.3e+02 Score=33.11 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 326 AIVDEYNRLLATQLETQRQY 345 (484)
Q Consensus 326 ~~~~EY~~LLtsQLEsQR~y 345 (484)
.|...|.......+..+..-
T Consensus 251 ~i~~~y~~y~~~~~~~~~~~ 270 (1353)
T TIGR02680 251 NFLQRYRRYARTMLRRRATR 270 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 413
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.92 E-value=2.7e+02 Score=28.41 Aligned_cols=13 Identities=31% Similarity=0.504 Sum_probs=7.4
Q ss_pred HHHHhHHHHHHhH
Q 011525 424 ATILDLEEQIRDL 436 (484)
Q Consensus 424 ~~i~eL~EQvrDL 436 (484)
.+...|+++|.+|
T Consensus 284 ~~~~~l~~ei~~L 296 (297)
T PF02841_consen 284 EEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4555566666554
No 414
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.69 E-value=8.2 Score=37.76 Aligned_cols=37 Identities=30% Similarity=0.604 Sum_probs=25.5
Q ss_pred CccccCCcCCCCCCceeecCCCc-cccccccccCCccccccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFC 212 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~~~~CPvCR~~ 212 (484)
|-.|-++-.. ++.+||+|. +|..|-.. -..||+|+..
T Consensus 161 Cr~C~~~~~~----VlllPCrHl~lC~~C~~~--~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREAT----VLLLPCRHLCLCGICDES--LRICPICRSP 198 (207)
T ss_pred ceecCcCCce----EEeecccceEeccccccc--CccCCCCcCh
Confidence 8888776443 589999976 45566443 3469999864
No 415
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=52.67 E-value=3.3e+02 Score=29.32 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=29.5
Q ss_pred CCChhHHHHhhcccccc-eeEEEEEe------cCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 76 YLSSDEFVRFCGSHIDH-VEELIFIR------NDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 76 ~~~~~d~l~F~~~~~~~-i~~~riir------~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
++|+++|...+...++. ..++.|.- ......-|.-|..=.++..|.=|...+..-.|.
T Consensus 5 ~~svsel~~~ik~~le~~~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~ 69 (438)
T PRK00286 5 ILSVSELNRYVKSLLERDLGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSARRLKFK 69 (438)
T ss_pred cCcHHHHHHHHHHHHHhhCCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhhcCCCC
Confidence 57888888777654332 33343321 111224566665544555555555555444443
No 416
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=52.42 E-value=57 Score=31.90 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKN 400 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n 400 (484)
+...++.+|+.++.+|+++.+..+++|+...=|
T Consensus 179 ~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln 211 (221)
T PF14335_consen 179 ERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELN 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 345677788888888888777777777665333
No 417
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.39 E-value=3.3e+02 Score=30.92 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHhHHHhhhhHHHhhcc
Q 011525 424 ATILDLEEQIRDLTVYIEAQKTLTNM 449 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~leaq~ki~~~ 449 (484)
..++|-++-|+|+..++++-+||.++
T Consensus 127 ~~~Re~k~~lldl~~v~~~ieKL~k~ 152 (705)
T KOG2307|consen 127 CSNREKKIELLDLIYVLVAIEKLSKM 152 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999997
No 418
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=52.39 E-value=39 Score=38.10 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=55.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhccc-ccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSH-IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~-~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+|.|=.||..+|..+|..+++.+ .-.|..++++++ ...+.|.+.++|..-....||..|..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-------fAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-------YAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-------eEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999887 368888888873 57899999999999999999998765
No 419
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.37 E-value=3.5e+02 Score=29.57 Aligned_cols=13 Identities=15% Similarity=0.509 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 011525 340 ETQRQYYESLLAE 352 (484)
Q Consensus 340 EsQR~yyE~~l~~ 352 (484)
|.-++||..++-+
T Consensus 153 eqeqef~vnKlm~ 165 (552)
T KOG2129|consen 153 EQEQEFFVNKLMN 165 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 3334466655443
No 420
>PF14282 FlxA: FlxA-like protein
Probab=52.28 E-value=31 Score=30.05 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
+.+..+|..|+-||.-|..-.
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777776554433
No 421
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.14 E-value=1.2e+02 Score=33.43 Aligned_cols=43 Identities=7% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
.++..|......+..+.++++++.. .....+.+|+.|+.++.-
T Consensus 102 ~i~~av~~~~~~~~~~~~ql~~~~~----~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 102 QIQQAVQSETQELTKEIEQLKSERQ----QLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccc
Confidence 3444554444444444444443322 233567788888877543
No 422
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=52.01 E-value=4.5e+02 Score=31.21 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=3.2
Q ss_pred eEEEEEe
Q 011525 108 YSVLIKL 114 (484)
Q Consensus 108 ymvLikF 114 (484)
..|-+.|
T Consensus 72 ~~V~l~F 78 (908)
T COG0419 72 ASVELEF 78 (908)
T ss_pred EEEEEEE
Confidence 3444444
No 423
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.96 E-value=5.2 Score=38.30 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=29.6
Q ss_pred CCCcCccccC-CcCCCCCCc--eeecCCCccccccccccC-------------Ccccccccc
Q 011525 166 ELPTCPICLE-RLDPDTSGI--LSTICDHSFQCSCTAKWT-------------VLSCQVCRF 211 (484)
Q Consensus 166 e~ptCpICLe-~l~~~~~gi--vt~~C~H~Fh~~Cl~~w~-------------~~~CPvCR~ 211 (484)
++..|.||.- .++..+... -.+.||..||.-|+..|. -..||.|..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~ 225 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSD 225 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCC
Confidence 5567777753 233221111 146899999999999993 146888854
No 424
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=51.79 E-value=2e+02 Score=26.56 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHHHhHHHhhh
Q 011525 419 LRLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~le 441 (484)
..+++.-+.+|+.|+.||-+-+-
T Consensus 114 ~~ek~~a~~~L~~~i~~la~~~a 136 (164)
T PRK14473 114 EQERQRMLSELKSQIADLVTLTA 136 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788888888877653
No 425
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.74 E-value=2.3e+02 Score=27.36 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=7.2
Q ss_pred CceeEeeccchhhhh
Q 011525 266 TQQIWDYVGDNYVHR 280 (484)
Q Consensus 266 t~~Vwcy~cd~~Vhr 280 (484)
+..+|.-..-..|-+
T Consensus 8 ~s~~W~~~E~mevfk 22 (190)
T PF05266_consen 8 KSPVWKTIESMEVFK 22 (190)
T ss_pred ccchhHHHHHHHHHH
Confidence 444555444444444
No 426
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.55 E-value=2.6e+02 Score=32.83 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLLAE 352 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~ 352 (484)
..||-.|+-.|+.-.+
T Consensus 327 aELerRRq~leeqqqr 342 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQR 342 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666554433
No 427
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=51.53 E-value=1.5e+02 Score=25.80 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 404 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~ 404 (484)
.+.+..++++|..++.+.-.+...|+.|......+
T Consensus 9 ~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 9 QQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555555555555444433
No 428
>PRK00736 hypothetical protein; Provisional
Probab=51.53 E-value=1.2e+02 Score=24.47 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=6.4
Q ss_pred HHHhHHHHHHhHHH
Q 011525 425 TILDLEEQIRDLTV 438 (484)
Q Consensus 425 ~i~eL~EQvrDLmf 438 (484)
+|..|+.|++-|.-
T Consensus 34 ~i~~L~~ql~~L~~ 47 (68)
T PRK00736 34 TVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445444443
No 429
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=51.20 E-value=16 Score=32.87 Aligned_cols=109 Identities=9% Similarity=0.046 Sum_probs=58.7
Q ss_pred Cccccccc-cceeecCCCccc-cc-CCCCceeeeeeeEEEccCCCCCcCCC----CCCCCcEEEEeccCCCCChhHHHHh
Q 011525 13 HPITIEEA-GFCTVSSTATRS-RA-NPNPKFSERRGLVHLFRGTSQSYQQN----PNSRSTCIFVVAVPNYLSSDEFVRF 85 (484)
Q Consensus 13 ~~~~~~~~-~~~~~~s~~~~~-~~-~gnp~v~~~~g~~hl~r~~~~~~~~~----~~~~~~~l~il~vP~~~~~~d~l~F 85 (484)
.++..+|| +...|...+.+= |. ..+...+-+.|.|||.+..+...... ..+...+++=..|-..|.+...
T Consensus 10 ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~--- 86 (130)
T smart00160 10 VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPL--- 86 (130)
T ss_pred ccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeec---
Confidence 34444443 466777777774 44 35789999999999998765411100 0011223333334444444311
Q ss_pred hcccccceeEEEEEec---CCCCcceEEEEEecChhcHHHHHhhhc
Q 011525 86 CGSHIDHVEELIFIRN---DAMEDRYSVLIKLVDQLTADEFYSNLN 128 (484)
Q Consensus 86 ~~~~~~~i~~~riir~---~~~pn~ymvLikF~~~~~A~~f~~~~n 128 (484)
......+.+... ++.+..-..+|+|.+...|++|+..+.
T Consensus 87 ----~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 87 ----AGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred ----CCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHH
Confidence 011111222221 121223467789999999999998763
No 430
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=51.14 E-value=1.8e+02 Score=25.91 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHhHHHhh
Q 011525 421 LRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDLmf~l 440 (484)
+++.-+.+|+.++-||-.-+
T Consensus 113 e~~~a~~~l~~~v~~la~~~ 132 (140)
T PRK07353 113 QKQAALAQLEQQVDALSRQI 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777775543
No 431
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=51.12 E-value=2.4e+02 Score=29.43 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLLAE 352 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~ 352 (484)
+|+++.+.--|+.+..
T Consensus 230 ~QM~s~~~nIe~~~~~ 245 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGN 245 (384)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5555555555554443
No 432
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=3.8e+02 Score=29.61 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 011525 343 RQYYESLLAEAKSK 356 (484)
Q Consensus 343 R~yyE~~l~~~~~~ 356 (484)
-+.||...+.++.+
T Consensus 116 ~~~~eA~qa~~~~e 129 (630)
T KOG0742|consen 116 TKEYEAAQAQLKSE 129 (630)
T ss_pred HHHHHHHHHhhhHH
Confidence 34566655555443
No 433
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.97 E-value=4.5e+02 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLLAEAK 354 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~~~ 354 (484)
.+|+.-+..++.....+.
T Consensus 189 ~~l~~v~~~~~~~~~~l~ 206 (670)
T KOG0239|consen 189 TELEHVTNSISELESVLK 206 (670)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555544444
No 434
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.97 E-value=5.1e+02 Score=31.10 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=10.2
Q ss_pred EEEEEecChhcHHHH
Q 011525 109 SVLIKLVDQLTADEF 123 (484)
Q Consensus 109 mvLikF~~~~~A~~f 123 (484)
||-|-|.....|-..
T Consensus 648 mVsLNfQT~dlaMQl 662 (1189)
T KOG1265|consen 648 MVSLNFQTPDLAMQL 662 (1189)
T ss_pred EEEeeccCccHHHHh
Confidence 688888776665544
No 435
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.93 E-value=2.2e+02 Score=26.81 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=3.6
Q ss_pred HHhHHHhhh
Q 011525 433 IRDLTVYIE 441 (484)
Q Consensus 433 vrDLmf~le 441 (484)
++-+|-+++
T Consensus 144 l~~~~e~ve 152 (158)
T PF09744_consen 144 LRKLKEHVE 152 (158)
T ss_pred HHHHHHHHH
Confidence 333444443
No 436
>PHA03161 hypothetical protein; Provisional
Probab=50.65 E-value=1.8e+02 Score=27.27 Aligned_cols=6 Identities=67% Similarity=1.082 Sum_probs=2.4
Q ss_pred HHhHHH
Q 011525 426 ILDLEE 431 (484)
Q Consensus 426 i~eL~E 431 (484)
+.||++
T Consensus 98 v~eLke 103 (150)
T PHA03161 98 ILELKE 103 (150)
T ss_pred HHHHHH
Confidence 334443
No 437
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.33 E-value=5.5 Score=41.75 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=36.0
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCcccccccccc----CCccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW----TVLSCQVCRFC 212 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w----~~~~CPvCR~~ 212 (484)
.+...|-||.+.+.-. -.+||+|.-|-.|--+. ....||.||..
T Consensus 59 Een~~C~ICA~~~TYs----~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYS----ARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEE----EeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 4677899999988866 67899999999897653 36799999975
No 438
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=50.10 E-value=99 Score=32.39 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 421 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~ 421 (484)
+..|-.+|.++.+|+.. +-+.|...++.+.++|.+|+++..-++++
T Consensus 10 i~~li~~la~~~~~~e~---~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ 55 (328)
T PF15369_consen 10 IANLIKELARVSEEKEV---TEERLKAEQESFEKKIRQLEEQNELIIKE 55 (328)
T ss_pred HHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444455555555432 22356666667777777777666555543
No 439
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.98 E-value=1.4e+02 Score=32.94 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDIC 383 (484)
Q Consensus 370 ~~k~~~l~~~l~kl 383 (484)
..|+.+|+.++=++
T Consensus 382 k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 382 KNRHVELSHRILRV 395 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554444
No 440
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=49.95 E-value=2.7e+02 Score=27.50 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.4
Q ss_pred HHHHHhHHHhhhhHHHhhcc
Q 011525 430 EEQIRDLTVYIEAQKTLTNM 449 (484)
Q Consensus 430 ~EQvrDLmf~leaq~ki~~~ 449 (484)
-+|+++|--|++||-...+.
T Consensus 177 ~e~~~~L~~lv~AQl~Yh~q 196 (215)
T cd07593 177 ADQYRDLTDLLDAELDYHQQ 196 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57999999999998776553
No 441
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=49.89 E-value=1.7e+02 Score=28.03 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHhHHH
Q 011525 421 LRDATILDLEEQIRDLTV 438 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDLmf 438 (484)
..++++..|++..++|.-
T Consensus 162 ~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 162 MLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777777643
No 442
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.82 E-value=64 Score=28.15 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=4.6
Q ss_pred ccCcEEe
Q 011525 455 IKGGTVL 461 (484)
Q Consensus 455 i~~G~v~ 461 (484)
++.|.|+
T Consensus 78 vk~gEiv 84 (105)
T PRK00888 78 VKPGETF 84 (105)
T ss_pred CCCCCEE
Confidence 5667675
No 443
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=49.62 E-value=2.1e+02 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
.++..-+.+|+.++-+|-.-+
T Consensus 112 ~e~~~a~~~l~~ei~~lA~~~ 132 (159)
T PRK13461 112 REKEKAEYEIKNQAVDLAVLL 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888877655
No 444
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=49.44 E-value=12 Score=29.14 Aligned_cols=34 Identities=18% Similarity=0.525 Sum_probs=26.3
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCcccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~ 199 (484)
+-..|++|-+.|.+....++=..|+-.+|+.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4568999999996544555667899999999943
No 445
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.95 E-value=1.5e+02 Score=32.70 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=7.3
Q ss_pred HHHhHHHHHHhHHHhh
Q 011525 425 TILDLEEQIRDLTVYI 440 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~l 440 (484)
++.+|+.+++++.--|
T Consensus 146 ~~~~~~~~~~~~~~~l 161 (525)
T TIGR02231 146 EDREAERRIRELEKQL 161 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 446
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.63 E-value=5.1e+02 Score=30.47 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLLAE 352 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~ 352 (484)
+||.-|-+-...+|.+
T Consensus 397 aqLrRrLrilnqqlre 412 (861)
T PF15254_consen 397 AQLRRRLRILNQQLRE 412 (861)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444443333333433
No 447
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=48.42 E-value=52 Score=27.42 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 415 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~ 415 (484)
......|+.+|++++.-.+.+.. +....+.|...++.++++.
T Consensus 27 ~~~~~~lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i 68 (83)
T PF07544_consen 27 DTATGSLKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQI 68 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHH
Confidence 34445566666666555444444 3444566777777777654
No 448
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.34 E-value=2.9e+02 Score=27.53 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKA 389 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~ 389 (484)
-++++..+++.|..|+.+
T Consensus 33 ~L~e~~kE~~~L~~Er~~ 50 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMA 50 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544443
No 449
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.24 E-value=1.7e+02 Score=28.97 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHhHHHHHH
Q 011525 425 TILDLEEQIR 434 (484)
Q Consensus 425 ~i~eL~EQvr 434 (484)
+.+.|++||.
T Consensus 201 e~~~Lq~~i~ 210 (216)
T KOG1962|consen 201 EYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHh
Confidence 4456666653
No 450
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=48.19 E-value=2.2e+02 Score=26.63 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHhHHHhhh
Q 011525 423 DATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~le 441 (484)
.+++.||+|.|.+-.-++.
T Consensus 95 ~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 95 TDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567777777777666665
No 451
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.97 E-value=1.4e+02 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHhHHHhhhhHH
Q 011525 423 DATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~leaq~ 444 (484)
.+.|..+++||.-|--||..++
T Consensus 166 ~~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777776543
No 452
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.53 E-value=4.3e+02 Score=31.95 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=45.0
Q ss_pred CCCCCCCcEEE-----EeccCCCCChhHHHHhh---ccc-----------ccceeEEEEEecCCCCcceEEEEEecChhc
Q 011525 59 QNPNSRSTCIF-----VVAVPNYLSSDEFVRFC---GSH-----------IDHVEELIFIRNDAMEDRYSVLIKLVDQLT 119 (484)
Q Consensus 59 ~~~~~~~~~l~-----il~vP~~~~~~d~l~F~---~~~-----------~~~i~~~riir~~~~pn~ymvLikF~~~~~ 119 (484)
|..+|.|++|| +=|=|.+|.-++=.++. |.- -+.+.=.|.|-.++. +.|++-=+-.++..
T Consensus 50 pNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~IEI~l~~~~e~~~ItR~I~~~k~-S~y~iN~~a~t~s~ 128 (1072)
T KOG0979|consen 50 PNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYIEIELKDKDETLTITRLISRDKE-SKYFINDSATTKSE 128 (1072)
T ss_pred CCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceEEEEEecCCCceEEEEEEeecCC-cceeeccchhhhHH
Confidence 55567777765 34557777766555432 211 123444555555554 68888777778888
Q ss_pred HHHHHhhhcCC
Q 011525 120 ADEFYSNLNGK 130 (484)
Q Consensus 120 A~~f~~~~ng~ 130 (484)
..++..+||-+
T Consensus 129 i~elv~~fNIQ 139 (1072)
T KOG0979|consen 129 IEELVAHFNIQ 139 (1072)
T ss_pred HHHHHHHHhcc
Confidence 88999999875
No 453
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=47.53 E-value=3.2e+02 Score=35.08 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
..+..++.++.+++.++.+.++--+.|.++.+.++..++.|+++.+.+
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l 715 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNL 715 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666777888888888777777766544
No 454
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=47.53 E-value=2.3e+02 Score=27.74 Aligned_cols=81 Identities=22% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 011525 347 ESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRD 423 (484)
Q Consensus 347 E~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~---~~~ 423 (484)
|+-|+++.++.+ +..+++.+|...+..+...++.+...++.+....+.+..+++.+..+++..-. -..
T Consensus 94 E~dLE~~eeraE---------~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE 164 (205)
T KOG1003|consen 94 EGELERAEERAE---------AAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE 164 (205)
T ss_pred HhHHHHHHHHHH---------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHHhHHHHHHhH
Q 011525 424 ATILDLEEQIRDL 436 (484)
Q Consensus 424 ~~i~eL~EQvrDL 436 (484)
..+.-|+.++-||
T Consensus 165 RsVakLeke~Ddl 177 (205)
T KOG1003|consen 165 RRVAKLEKERDDL 177 (205)
T ss_pred HHHHHHcccHHHH
No 455
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=47.45 E-value=2.6e+02 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 409 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~ 409 (484)
+..+++....+++++.+.....-++|++|++.+.+-.+
T Consensus 137 k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d 174 (192)
T COG5374 137 KIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLD 174 (192)
T ss_pred chhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33445555556666555555556678888777765443
No 456
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.40 E-value=1.6e+02 Score=24.11 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 011525 373 MQDIQNELDICE 384 (484)
Q Consensus 373 ~~~l~~~l~kl~ 384 (484)
+..|..+.++|.
T Consensus 14 Ia~L~eEGekLS 25 (74)
T PF12329_consen 14 IAQLMEEGEKLS 25 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 457
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=6.5 Score=40.36 Aligned_cols=41 Identities=22% Similarity=0.538 Sum_probs=27.8
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCcc-ccccccccCCccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSF-QCSCTAKWTVLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~F-h~~Cl~~w~~~~CPvCR~~ 212 (484)
..--|.||.+.-.+- +-+.|||.- |..|-... ..||+||..
T Consensus 299 ~~~LC~ICmDaP~DC----vfLeCGHmVtCt~CGkrm--~eCPICRqy 340 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDC----VFLECGHMVTCTKCGKRM--NECPICRQY 340 (350)
T ss_pred HHHHHHHHhcCCcce----EEeecCcEEeehhhcccc--ccCchHHHH
Confidence 366799998755544 789999964 33443322 389999963
No 458
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.17 E-value=3.3e+02 Score=27.79 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=11.6
Q ss_pred cEEEEeccCCCCChhHHHHhh
Q 011525 66 TCIFVVAVPNYLSSDEFVRFC 86 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~ 86 (484)
.-|+|++-|+.=...||++=+
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~ 35 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTL 35 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHH
Confidence 445555555555555555544
No 459
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.15 E-value=2.9e+02 Score=27.16 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=7.4
Q ss_pred HHHhHHHHHHhHHH
Q 011525 425 TILDLEEQIRDLTV 438 (484)
Q Consensus 425 ~i~eL~EQvrDLmf 438 (484)
.|.+|.++++|.|.
T Consensus 125 ~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 125 KVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 460
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.01 E-value=2.1e+02 Score=25.99 Aligned_cols=17 Identities=6% Similarity=0.196 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 339 LETQRQYYESLLAEAKS 355 (484)
Q Consensus 339 LEsQR~yyE~~l~~~~~ 355 (484)
|.+.|++.-.+|..+..
T Consensus 59 l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555554443
No 461
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=46.93 E-value=2e+02 Score=30.37 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=65.7
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-----------CCCcceEEEEEecChhcHHH-HHhhhcCCcC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-----------AMEDRYSVLIKLVDQLTADE-FYSNLNGKRF 132 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-----------~~pn~ymvLikF~~~~~A~~-f~~~~ng~~F 132 (484)
..+|-|.+--+.-.|.|+..-+......--.+++|-=. .+..+|.|++.- ..-++ |...-..-++
T Consensus 165 REVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~icK~l~kaT~G~Y~V~lDe---~HlkeLl~e~~~Pp~~ 241 (378)
T KOG2807|consen 165 REVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVFICKELCKATGGRYSVALDE---GHLKELLLEHTHPPPA 241 (378)
T ss_pred eEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHHHHHHHHHhhCCeEEEEeCH---HHHHHHHHhcCCCCCc
Confidence 36777888888888999988887765444455565311 234588888742 22222 3333355556
Q ss_pred CCCcccceeeEEEeEEEEeecccccCCCCCCCCCCCcCccccCCcCCCCCCceeecCCCcccccccccc--CCccccccc
Q 011525 133 SPAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW--TVLSCQVCR 210 (484)
Q Consensus 133 ~sle~e~C~~v~v~~v~~~~~~~~~~~~~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w--~~~~CPvCR 210 (484)
|+.. .|.+|-+ ++|.......|+=..|-..+. -.| -||-.|-.+. ....||+|.
T Consensus 242 ~~~~--~~sLvkm------------GFP~~~~e~~ps~C~CH~~~~--~~G--------y~CP~CkakvCsLP~eCpiC~ 297 (378)
T KOG2807|consen 242 NKSK--ECSLVKM------------GFPSRSPEDTPSFCACHSELS--GGG--------YFCPQCKAKVCSLPIECPICS 297 (378)
T ss_pred cccc--CCceEEe------------cCCCcccccCcchheeccccc--cCc--------eeCCcccCeeecCCccCCccc
Confidence 5543 4666533 455555555665444542222 122 2333443332 255788886
Q ss_pred c
Q 011525 211 F 211 (484)
Q Consensus 211 ~ 211 (484)
.
T Consensus 298 l 298 (378)
T KOG2807|consen 298 L 298 (378)
T ss_pred e
Confidence 4
No 462
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=46.93 E-value=1e+02 Score=31.15 Aligned_cols=79 Identities=13% Similarity=0.238 Sum_probs=63.1
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCCCcccceee
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHM 142 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle~e~C~~ 142 (484)
+...|=|-.+|-.|+-.||..-+.+|. .|..+-+.|+..+ -.+-...+.|.+...|..-....||.-|+.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg-~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L------- 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG-PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL------- 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC-ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE-------
Confidence 567899999999999999977766663 4555666664421 2477889999999999999999999999887
Q ss_pred EEEeEEEEee
Q 011525 143 LFMLSVEYTE 152 (484)
Q Consensus 143 v~v~~v~~~~ 152 (484)
|.+||+..
T Consensus 260 --ILrvEwsk 267 (270)
T KOG0122|consen 260 --ILRVEWSK 267 (270)
T ss_pred --EEEEEecC
Confidence 77888875
No 463
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.85 E-value=2.8e+02 Score=33.57 Aligned_cols=85 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHhHHHh
Q 011525 363 ETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRD---ATILDLEEQIRDLTVY 439 (484)
Q Consensus 363 ~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~---~~i~eL~EQvrDLmf~ 439 (484)
+...+....++++++.+++.++++...+.+..-....--..+.++...+++++........ +++.+++.+|+--.+-
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~i 519 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEI 519 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHhh
Q 011525 440 IEAQKTLT 447 (484)
Q Consensus 440 leaq~ki~ 447 (484)
++.+.+.+
T Consensus 520 i~~~~~se 527 (1041)
T KOG0243|consen 520 ISQQEKSE 527 (1041)
T ss_pred HHHHHHHH
No 464
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=46.77 E-value=13 Score=39.45 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=54.3
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecC--CCCcceE-EEEEecChhcHHHHHhhhcCCcC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYS-VLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~--~~pn~ym-vLikF~~~~~A~~f~~~~ng~~F 132 (484)
|.|--+|.+||-++|+.-|.|+.+++....+...+ .-++.|. +-|.|..+.+..+|...|+|..|
T Consensus 10 vv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 10 VVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 66778999999999999999999999888888533 1244554 66999999999999999999877
No 465
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.69 E-value=78 Score=29.45 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=56.9
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...|.|-.+|..+|-.||..++..+- .|..++|.++. ....+-...+.|.+...|......++|..|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g-~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~ 184 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG-PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG 184 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC-ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence 48999999999999999999887663 33777777742 23457789999999999999999999887765
No 466
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.67 E-value=6.2e+02 Score=30.79 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 011525 339 LETQRQYYESLLAE 352 (484)
Q Consensus 339 LEsQR~yyE~~l~~ 352 (484)
-|-|-.-||+.+.+
T Consensus 389 eelqsss~Ee~~SK 402 (1195)
T KOG4643|consen 389 EELQSSSYEELISK 402 (1195)
T ss_pred HHHhhhhHHHHHHH
Confidence 33444445544444
No 467
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=46.62 E-value=86 Score=34.25 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=63.3
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEec-CCCCcceEEEEEecChhcHHHHHhhhcCCcCCCCccc
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN-DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAE 138 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~-~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle~e 138 (484)
..+++-|.|=.+|-++.-.||.-+++. +-.|-++|+.++ +.-.||--+.+.|++...|.+=.+.+|+.-|.+-...
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHh-ccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 368999999999999999999988753 567889999996 3345788899999999999999999999888765443
No 468
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.51 E-value=2.9e+02 Score=26.94 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcccHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 344 QYYESLLAEAKSKRESLIPETV--EKAVASKMQDIQNELDICEEA-KKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR 420 (484)
Q Consensus 344 ~yyE~~l~~~~~~~~~~~~~~~--~~~~~~k~~~l~~~l~kl~~e-~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~ 420 (484)
..|...+.+.-.+....+..++ ++.+..++.+++..+.+.+.. ..+|+.=++.|.+.--.-+....+.-......+.
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~ 109 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELA 109 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHhH
Q 011525 421 LRDATILDLEEQIRDL 436 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDL 436 (484)
.....+..|+.++++|
T Consensus 110 ~~~~~v~~l~~~l~~L 125 (219)
T TIGR02977 110 AVEETLAKLQEDIAKL 125 (219)
T ss_pred HHHHHHHHHHHHHHHH
No 469
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.38 E-value=3e+02 Score=30.69 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 011525 374 QDIQNELDICEEAKK 388 (484)
Q Consensus 374 ~~l~~~l~kl~~e~~ 388 (484)
+.++.++..|.+|+.
T Consensus 77 ~~vt~~~~ql~kEK~ 91 (613)
T KOG0992|consen 77 STVTQGLQQLQKEKT 91 (613)
T ss_pred HHHHHHHHHHhHHHH
Confidence 333334444444443
No 470
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.27 E-value=9.4 Score=26.58 Aligned_cols=13 Identities=46% Similarity=1.541 Sum_probs=10.7
Q ss_pred eeecccccccccc
Q 011525 230 LWVCLICGFVGCG 242 (484)
Q Consensus 230 lWiCL~CG~vGCg 242 (484)
.|+|.+||++.=|
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 6999999998543
No 471
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=46.03 E-value=2.3e+02 Score=25.67 Aligned_cols=115 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
..+++..+..++..-|...++.-+.-....+..+.......+.+... .+......+...+.....+... .++..+..
T Consensus 17 l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~l~~~~~~~~~--~l~~~~~~ 93 (202)
T PF01442_consen 17 LEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKE-RIEERIEELKNSLDSSTSELDE--SLSERAEE 93 (202)
T ss_dssp HHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHH--HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 011525 400 NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 400 nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
-...+.....+++.............+...-+.+++-+
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 131 (202)
T PF01442_consen 94 LKERLEARAEELESRLEEEVDELEESLESRSEELKEKI 131 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 472
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.87 E-value=3.7e+02 Score=28.05 Aligned_cols=59 Identities=10% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 374 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 374 ~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
.++|.+++.+.-|...+...=.....+|..+...+.+++++...-.. -..|-+|+++.+
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~----mL~EaQEElk~l 302 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA----MLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 33444444444444333332223345566666666666665544333 234455665543
No 473
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=45.84 E-value=1.6e+02 Score=29.95 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhH
Q 011525 397 LIKNQEIMRKKFKEIEEREITSLR-LRDATILDLEEQIRDL 436 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~~-~~~~~i~eL~EQvrDL 436 (484)
++..+....++++.+|+.++..+. .+.++-.....|..|.
T Consensus 257 ~raeL~acEEkl~kmeE~Qa~~l~~aR~~errkvraqf~df 297 (311)
T PF04642_consen 257 ARAELNACEEKLKKMEEEQAEMLRAARTEERRKVRAQFHDF 297 (311)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455666677777776655544 3445666677787776
No 474
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.61 E-value=2.2e+02 Score=26.19 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=5.7
Q ss_pred HHHHHhHHHHHH
Q 011525 423 DATILDLEEQIR 434 (484)
Q Consensus 423 ~~~i~eL~EQvr 434 (484)
+.+|..|-.|++
T Consensus 121 d~el~~l~~ql~ 132 (160)
T PF13094_consen 121 DEELLPLLKQLN 132 (160)
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 475
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=45.56 E-value=6.2e+02 Score=30.48 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 391 ADVNSKLIKNQEIMRKKFKE 410 (484)
Q Consensus 391 ~~ln~~L~~nq~~~~~~~~~ 410 (484)
++||+.-.+.....++++++
T Consensus 1123 rE~n~s~i~~~V~e~krL~~ 1142 (1189)
T KOG1265|consen 1123 RELNSSNIKEFVEERKRLAE 1142 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666655544444444433
No 476
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.48 E-value=1.5e+02 Score=28.05 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 333 RLLATQLETQRQYYES 348 (484)
Q Consensus 333 ~LLtsQLEsQR~yyE~ 348 (484)
+.+.+..-+||..|=.
T Consensus 92 ~~~~~~fraQRN~YIs 107 (192)
T PF05529_consen 92 QVLAKKFRAQRNMYIS 107 (192)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 4455666788877753
No 477
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.43 E-value=4e+02 Score=28.32 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 343 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA-KKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 421 (484)
Q Consensus 343 R~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e-~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~ 421 (484)
|.++|..-.-.. .+.+.+. .+...+.+|+..+.+..+. ....+-||..|......++....++.+-..+. +.
T Consensus 219 R~hleqm~~~~~-----~I~~~~~-~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y-~~ 291 (359)
T PF10498_consen 219 RSHLEQMKQHKK-----SIESALP-ETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY-KQ 291 (359)
T ss_pred HHHHHHHHHHHH-----HHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHhHHHHHHhHHHhhhhHHH
Q 011525 422 RDATILDLEEQIRDLTVYIEAQKT 445 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~leaq~k 445 (484)
....|.++..++..++--|+..+.
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
No 478
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=45.24 E-value=2.6e+02 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 401 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 401 q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
...|..-++++..+....-.+.++...+|.+|-.||
T Consensus 106 ~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~ 141 (145)
T PF14942_consen 106 KQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEM 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554444444555555666655554
No 479
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.16 E-value=2e+02 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 396 KLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 396 ~L~~nq~~~~~~~~~~e 412 (484)
.|.++.+.+...++.++
T Consensus 67 ~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 67 ELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 480
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=3.6e+02 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEI 403 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~ 403 (484)
.+++++++.+..+.++.+.-.++++.|+...+.
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~ 377 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEK 377 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 566777777776666665555677777766554
No 481
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.83 E-value=1e+02 Score=33.94 Aligned_cols=58 Identities=5% Similarity=0.067 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 361 IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 361 ~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
.....-.+.+.+..+|+.+|++++.|.+.+....+.+.+..+.+...++.|+++.+..
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 482
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.76 E-value=20 Score=42.59 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred CceeecCCCccccccccccCCccccccccccccCCCCccCCCCCCCceeecccccc
Q 011525 183 GILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGF 238 (484)
Q Consensus 183 givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~ 238 (484)
|.+.+.=+..||.+|-..-....||.|-.. ......|..|+...+...|-.||.
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~--Te~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTH--TEPVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCC--CCcceeCccccCcCCCCcCCCCCC
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.75 E-value=7.6 Score=45.17 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCT 198 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl 198 (484)
+...-+|-+|.-.+- ....+..+|||.||.+|+
T Consensus 814 ~ep~d~C~~C~~~ll--~~pF~vf~CgH~FH~~Cl 846 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLL--IKPFYVFPCGHCFHRDCL 846 (911)
T ss_pred ecCccchHHhcchhh--cCcceeeeccchHHHHHH
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.73 E-value=5.2e+02 Score=29.34 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 415 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~ 415 (484)
+.-+.+|-.-|-.+....-..-...+....+++. +.++.++++++++++...+|++--+....||+.+.++++.|-.+-
T Consensus 568 ~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~Ql-Q~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 568 TQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQL-QDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q ss_pred -------HHHHHHHHHHHHhHHHHHHhHHHhhhhHHH
Q 011525 416 -------ITSLRLRDATILDLEEQIRDLTVYIEAQKT 445 (484)
Q Consensus 416 -------~~~~~~~~~~i~eL~EQvrDLmf~leaq~k 445 (484)
..+...-.+++.-+-.|++-|---||+-.+
T Consensus 647 ~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~ 683 (741)
T KOG4460|consen 647 HSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTM 683 (741)
T ss_pred cccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 485
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=44.69 E-value=36 Score=32.34 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+++++.++.+.-++...|+. +|+|+ +....+++.|++.+|||-.=|..|+|+..
T Consensus 2 LeD~EsklN~AIERnalLE~-----------------ELdEK-----E~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLES-----------------ELDEK-----ENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------HHHHH-----HHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHH-----------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 486
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=44.66 E-value=15 Score=36.97 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLLAEAKS--------------KRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQE 402 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~~~~--------------~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~ 402 (484)
|-+|+.|.|||-.|.+..- +....-..--...+..++-.||.++.+|..+++.++..|+.|.+-|+
T Consensus 10 svi~~ErIY~e~~l~~~~~~~~~~~q~s~~~~~~~~~~~~~~~~~~~~~E~l~LQrQi~qLt~~lQ~~~~eneklk~~~K 89 (249)
T PF10422_consen 10 SVIESERIYYEYQLNRAHLVRSIQSQKSFSSSLKTSSTDSDLQSSKLVDETLLLQRQITQLTSQLQSQKQENEKLKELQK 89 (249)
T ss_dssp HHHHHHHHHHHH----------HHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHhhccchhhhcccchhccccccccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011525 403 IMRKKFKEIEEREITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 403 ~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvr 434 (484)
.-+ .-....+...+..|..|+.-|.
T Consensus 90 ~~k-------alleSkl~~~kk~IdrlK~~l~ 114 (249)
T PF10422_consen 90 TQK-------ALLESKLSNKKKEIDRLKLKLE 114 (249)
T ss_dssp --------------------------------
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHhh
No 487
>PF15294 Leu_zip: Leucine zipper
Probab=44.62 E-value=1.6e+02 Score=30.24 Aligned_cols=73 Identities=15% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHhHHHhhh
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR-----LRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~-----~~~~~i~eL~EQvrDLmf~le 441 (484)
+...+..|+.+.++|+...+.++...-...+.-.++...++++......... .+.+++.||+.++..+---++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH
No 488
>PF12773 DZR: Double zinc ribbon
Probab=44.60 E-value=25 Score=25.89 Aligned_cols=46 Identities=28% Similarity=0.620 Sum_probs=0.0
Q ss_pred CccccCCcCCCCCCceeecCCCccccccccccCCccccccccccc--cCCCCccCCCCCCC--ceeeccccc
Q 011525 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ--QDERPTCSVCGTVE--NLWVCLICG 237 (484)
Q Consensus 170 CpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~--~~~~~~C~~C~~~~--nlWiCL~CG 237 (484)
||.|...+++. ...||.|..... ......|..|+... +..+|..||
T Consensus 1 Cp~Cg~~~~~~----------------------~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 1 CPHCGTPNPDD----------------------AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCcCCcCCcc----------------------ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCccc
No 489
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.55 E-value=4.7e+02 Score=32.54 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHhhhc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 333 RLLATQLETQRQYYE--SLLAEAKSKRES---LIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKK 407 (484)
Q Consensus 333 ~LLtsQLEsQR~yyE--~~l~~~~~~~~~---~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~ 407 (484)
+.+.+.|+.+..|+. .++.++.++... ++.++--....++...|+.+.+++..+++.+...++.+..-...++.+
T Consensus 998 ~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~e 1077 (1294)
T KOG0962|consen 998 YQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQE 1077 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred H--HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 408 F--KEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 408 ~--~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
+ .+.....+...+.. .++...+.-+.|||-|-.|
T Consensus 1078 L~~~~~kd~~~nyr~~~-ie~~tt~~~~~DL~ky~~a 1113 (1294)
T KOG0962|consen 1078 LREKDFKDAEKNYRKAL-IELKTTELSNKDLDKYYKA 1113 (1294)
T ss_pred hhhhhhccHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
No 490
>PLN03188 kinesin-12 family protein; Provisional
Probab=44.54 E-value=6.7e+02 Score=31.25 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 327 IVDEYNRLLA---TQLETQRQYYESLLAEAKSKRESL----IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 327 ~~~EY~~LLt---sQLEsQR~yyE~~l~~~~~~~~~~----~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
+...|..|-. ..|+-+|+--|+ |.++++.++++ .....-+++...+.-|..+-+ +|++.+++.|++|+.
T Consensus 1112 ~~e~ya~l~ek~~~ll~~hr~i~eg-i~dvkkaaakag~kg~~~~f~~alaae~s~l~~ere---ker~~~~~enk~l~~ 1187 (1320)
T PLN03188 1112 MLEQYADLEEKHIQLLARHRRIQEG-IDDVKKAAARAGVRGAESKFINALAAEISALKVERE---KERRYLRDENKSLQA 1187 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHH
Q ss_pred HHH----------HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhH
Q 011525 400 NQE----------IMRKKFKEIEEREITSLR---LRDATILDLEEQIRDL 436 (484)
Q Consensus 400 nq~----------~~~~~~~~~e~~~~~~~~---~~~~~i~eL~EQvrDL 436 (484)
.+. ++-.++++.|+-..-+.+ ..+++.+.|..||.-|
T Consensus 1188 qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1188 QLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=44.51 E-value=1.4e+02 Score=27.26 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 380 LDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 380 l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
.+.+..-.+.+.++++.+.........++.++.+..+...+..+.+|+.|+..|.+
T Consensus 2 ~~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 2 REEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK01156 chromosome segregation protein; Provisional
Probab=44.49 E-value=5.9e+02 Score=29.96 Aligned_cols=137 Identities=9% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCCccccchh---hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH--HHHHHHH
Q 011525 302 AHCGTCECSEDSGISGALFN---SKVEAIVDEYNRLL--ATQLETQRQYYESLLAEAKSKRESLIPETVEK--AVASKMQ 374 (484)
Q Consensus 302 ~~~~~~e~~~~~~~~~~~~~---~K~e~~~~EY~~LL--tsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~--~~~~k~~ 374 (484)
+.|+.|....+....+.+.+ .++..+..+...|- ...|+.-....+..+.++....-..+.+...+ .+..++.
T Consensus 453 ~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~ 532 (895)
T PRK01156 453 SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLE 532 (895)
T ss_pred CCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhh
Q 011525 375 DIQNELDICEEAKKAVADVNSKLIK-NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 375 ~l~~~l~kl~~e~~~l~~ln~~L~~-nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~le 441 (484)
.+..++..+++......++.+.+.. ....+..++.++..-....... +|.++++++.++-.-++
T Consensus 533 ~~~~~l~~le~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~l~e~~~~l~ 597 (895)
T PRK01156 533 DIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLI---DIETNRSRSNEIKKQLN 597 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHh---hHHHHHHHHHHHHHHHH
No 493
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=44.36 E-value=2e+02 Score=33.57 Aligned_cols=96 Identities=13% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHH
Q 011525 348 SLLAEAKSKRESLIPETVEK-AVASKMQDIQNELDI-----------CEEAKKAV-ADVNSKLIK--NQEIMRKKFKEIE 412 (484)
Q Consensus 348 ~~l~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~k-----------l~~e~~~l-~~ln~~L~~--nq~~~~~~~~~~e 412 (484)
++|++++++-...+++|..- .+..++..|+.++.| |.++...| +++|+.|.+ |.-.++.+++.|.
T Consensus 462 e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk 541 (762)
T PLN03229 462 EMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLN 541 (762)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Q ss_pred HHHH---------HHHHHHHHHHHhHHHHHHhHHHhhhhHHHhh
Q 011525 413 EREI---------TSLRLRDATILDLEEQIRDLTVYIEAQKTLT 447 (484)
Q Consensus 413 ~~~~---------~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~ 447 (484)
+..+ +..+.+ .+|++.+.++|--=+..+|++
T Consensus 542 ~~~~~~~~s~g~~~a~~Lk----~ei~kki~e~~~~~~~kek~e 581 (762)
T PLN03229 542 EFSRAKALSEKKSKAEKLK----AEINKKFKEVMDRPEIKEKME 581 (762)
T ss_pred HHHHhhhhcccchhhhhhh----HHHHHHHHHhcccHHHHHHHH
No 494
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=44.25 E-value=7.5 Score=43.18 Aligned_cols=112 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 011525 333 RLLATQLETQRQYYESLLAEAKSKRES--LIPETVEKAVASKMQDIQNELDICEEA-------KKAVADVNSKLIKNQEI 403 (484)
Q Consensus 333 ~LLtsQLEsQR~yyE~~l~~~~~~~~~--~~~~~~~~~~~~k~~~l~~~l~kl~~e-------~~~l~~ln~~L~~nq~~ 403 (484)
+|+...||.|+.|-...-......... .............+.+|+..|+.|-+- ..++.+=-..|++.++.
T Consensus 395 ~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~ 474 (539)
T PF10243_consen 395 GLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEM 474 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHH
Q 011525 404 MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 404 ~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ 444 (484)
|+...+.....+.......+.-++.|..||.+|--.|.-|.
T Consensus 475 W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~ 515 (539)
T PF10243_consen 475 WRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQ 515 (539)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
No 495
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.22 E-value=5.1e+02 Score=29.09 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 330 EYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEK-----AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 404 (484)
Q Consensus 330 EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~-----~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~ 404 (484)
+....+-+-+..|-+|--.++....++.+....+.... .+.+.+-.++.|+.-+.-|++.+.++-....+.++.+
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql 273 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQL 273 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011525 405 RKKFKEIEEREITSLRLRDATILDLEE 431 (484)
Q Consensus 405 ~~~~~~~e~~~~~~~~~~~~~i~eL~E 431 (484)
....++++++.++......+.-+||+.
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>PRK11281 hypothetical protein; Provisional
Probab=43.97 E-value=5.2e+02 Score=31.77 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH-HHHHHHHHHHHHHHH-H----------HHHHHHHHHHHHH
Q 011525 332 NRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVA-SKMQDIQNELDICEE-A----------KKAVADVNSKLIK 399 (484)
Q Consensus 332 ~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~kl~~-e----------~~~l~~ln~~L~~ 399 (484)
+.-+..-+..||.|...++++.+... +.++.++. ++.++.++.+++.+. + .+.+.+.|..|.+
T Consensus 218 ~~~l~~l~~~q~d~~~~~~~~~~~~~-----~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~ 292 (1113)
T PRK11281 218 NTQLQDLLQKQRDYLTARIQRLEHQL-----QLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQ 292 (1113)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHH
Q 011525 400 NQEIMRKKFKEIEEREITSLRLRD---ATILDLEEQIR 434 (484)
Q Consensus 400 nq~~~~~~~~~~e~~~~~~~~~~~---~~i~eL~EQvr 434 (484)
.......++..+..+..+..+..+ +....|+||+.
T Consensus 293 ~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 293 RLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=43.91 E-value=2.5e+02 Score=25.44 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 367 KAVASKMQDIQNELDICEEAKKAVADVNSKLIK----NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 367 ~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~----nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
+....+++.++..+.........+....+.|.. +...+..++..+..+...+....+.....|+..+.-.-+|-+.
T Consensus 36 ~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~ 115 (213)
T cd00176 36 EALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA 115 (213)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 011525 443 QK 444 (484)
Q Consensus 443 q~ 444 (484)
.+
T Consensus 116 ~~ 117 (213)
T cd00176 116 DD 117 (213)
T ss_pred HH
No 498
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.86 E-value=1.7e+02 Score=28.16 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKT 445 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~k 445 (484)
+...+.++.+++++.++...++.--..|.+..+..+..-.+-++|...+ +++++|++++..|.--|+.-..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l-----~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELL-----EELEELKKELKELKKELEKYSE 131 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
No 499
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.86 E-value=5e+02 Score=30.15 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 414 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~ 414 (484)
|...|..|+.-|+.-|.+-. ..++.....++.+++..|..+.+|-.+.-- .|+.-+......-+...+.
T Consensus 561 lR~EL~~QQ~~y~~alqekv--------sevEsrl~E~L~~~E~rLNeARREHtKaVV---sLRQ~qrqa~reKer~~E~ 629 (739)
T PF07111_consen 561 LRRELTQQQEVYERALQEKV--------SEVESRLREQLSEMEKRLNEARREHTKAVV---SLRQIQRQAAREKERNQEL 629 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhchhHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHhH
Q 011525 415 EITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 415 ~~~~~~~~~~~i~eL~EQvrDL 436 (484)
..-......+++..|..++++|
T Consensus 630 ~~lq~e~~~~e~~rl~~rlqel 651 (739)
T PF07111_consen 630 RRLQEEARKEEGQRLTQRLQEL 651 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 500
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=43.83 E-value=32 Score=33.34 Aligned_cols=93 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC---CccccccccccccCCCCccCCCCCCCcee--------ecc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVENLW--------VCL 234 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~~~~~~~~C~~C~~~~nlW--------iCL 234 (484)
+.+-|.+|-+.=. +.-.|-|+.|..| .|. ...||.+..+. .|..+|....-= .|-
T Consensus 59 ~~~~C~nCg~~GH------~~~DCP~~iC~~C--~~~~H~s~~C~~~~~C~------~Cg~~GH~~~dC~P~~~~~~~C~ 124 (190)
T COG5082 59 ENPVCFNCGQNGH------LRRDCPHSICYNC--SWDGHRSNHCPKPKKCY------NCGETGHLSRDCNPSKDQQKSCF 124 (190)
T ss_pred cccccchhcccCc------ccccCChhHhhhc--CCCCcccccCCcccccc------cccccCccccccCcccccCccee
Q ss_pred ccccccccCCCCCccccccCCCCCceeee---CCCceeEeeccchhhh
Q 011525 235 ICGFVGCGRYKEGHAVRHWKDTQHWYSLD---LRTQQIWDYVGDNYVH 279 (484)
Q Consensus 235 ~CG~vGCgr~~~~HA~~H~~~t~H~~~l~---l~t~~Vwcy~cd~~Vh 279 (484)
.|+. ..|...-.++..-.|.+. .....+.||.|.+.-|
T Consensus 125 ~C~s-------~~H~s~~Cp~~~k~y~~~~~~~~~~~~~cy~c~~~~H 165 (190)
T COG5082 125 DCNS-------TRHSSEDCPSIWKHYVLNNGDGHPIKKFCYSCGSAGH 165 (190)
T ss_pred ccCC-------CccccccCcccccccccccCCCcceeeeccccCCccc
Done!