Query 011525
Match_columns 484
No_of_seqs 304 out of 2051
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i50_A Ubiquitin carboxyl-term 99.8 3.2E-22 1.1E-26 177.7 -0.8 108 185-294 3-121 (126)
2 2g45_A Ubiquitin carboxyl-term 99.8 1.9E-21 6.5E-26 173.3 1.6 84 196-279 2-106 (129)
3 3c5k_A HD6, histone deacetylas 99.8 1.6E-19 5.6E-24 156.5 2.4 63 218-280 24-86 (109)
4 2uzg_A Ubiquitin carboxyl-term 99.7 2.3E-18 7.9E-23 146.4 2.0 62 217-278 24-88 (97)
5 3ihp_A Ubiquitin carboxyl-term 99.7 2.3E-18 7.9E-23 195.0 -1.8 110 165-278 156-286 (854)
6 2ida_A Hypothetical protein; z 99.7 4.7E-18 1.6E-22 145.2 0.1 65 216-280 16-87 (102)
7 3mhs_A Ubiquitin carboxyl-term 99.2 2.6E-12 8.8E-17 135.6 0.9 60 218-279 48-109 (476)
8 4ap4_A E3 ubiquitin ligase RNF 98.8 1.2E-09 4.1E-14 95.0 1.1 78 165-242 5-103 (133)
9 1iym_A EL5; ring-H2 finger, ub 98.7 9.3E-09 3.2E-13 76.7 3.7 48 164-212 2-52 (55)
10 2egp_A Tripartite motif-contai 98.7 8.4E-09 2.9E-13 82.4 3.1 50 160-213 5-63 (79)
11 2ecj_A Tripartite motif-contai 98.7 1.2E-08 4.1E-13 76.7 3.7 45 161-209 9-58 (58)
12 2ect_A Ring finger protein 126 98.6 1.5E-08 5E-13 81.1 4.0 52 161-213 9-62 (78)
13 2yur_A Retinoblastoma-binding 98.6 1.4E-08 4.7E-13 80.9 3.8 49 161-213 9-62 (74)
14 2ecm_A Ring finger and CHY zin 98.6 1.1E-08 3.6E-13 76.2 2.9 47 166-212 4-52 (55)
15 2djb_A Polycomb group ring fin 98.6 1.3E-08 4.6E-13 80.4 3.1 50 160-213 8-60 (72)
16 2d8t_A Dactylidin, ring finger 98.6 1.4E-08 4.7E-13 80.1 3.1 47 163-213 11-59 (71)
17 1x4j_A Ring finger protein 38; 98.6 1E-08 3.5E-13 81.6 1.8 49 164-213 20-70 (75)
18 3ztg_A E3 ubiquitin-protein li 98.6 1.4E-08 4.6E-13 83.8 2.6 49 161-213 7-60 (92)
19 2ep4_A Ring finger protein 24; 98.6 1.8E-08 6.2E-13 79.7 3.1 51 162-213 10-62 (74)
20 4ayc_A E3 ubiquitin-protein li 98.6 1E-08 3.5E-13 91.4 1.8 44 166-213 52-97 (138)
21 2ea6_A Ring finger protein 4; 98.6 1E-08 3.6E-13 79.5 1.6 54 160-213 8-66 (69)
22 2ysl_A Tripartite motif-contai 98.6 2E-08 7E-13 79.0 3.1 48 162-213 15-67 (73)
23 2ysj_A Tripartite motif-contai 98.6 2.8E-08 9.5E-13 76.3 3.6 44 162-209 15-63 (63)
24 1t1h_A Gspef-atpub14, armadill 98.6 1.5E-08 5.3E-13 80.9 2.2 47 163-213 4-53 (78)
25 1g25_A CDK-activating kinase a 98.6 1.3E-08 4.5E-13 78.7 1.6 48 166-213 2-53 (65)
26 2csy_A Zinc finger protein 183 98.6 2.2E-08 7.7E-13 80.8 2.9 48 162-213 10-59 (81)
27 2ecw_A Tripartite motif-contai 98.6 3.4E-08 1.2E-12 79.4 3.9 50 160-213 12-69 (85)
28 2kiz_A E3 ubiquitin-protein li 98.6 2.6E-08 8.7E-13 77.8 3.0 50 163-213 10-61 (69)
29 1bor_A Transcription factor PM 98.5 4.7E-08 1.6E-12 73.9 4.2 45 165-214 4-48 (56)
30 2ct2_A Tripartite motif protei 98.5 3.1E-08 1.1E-12 80.5 3.3 53 161-213 9-66 (88)
31 2ecv_A Tripartite motif-contai 98.5 5.1E-08 1.8E-12 78.3 4.0 49 161-213 13-69 (85)
32 2ecy_A TNF receptor-associated 98.5 2.8E-08 9.7E-13 77.1 2.3 48 162-213 10-60 (66)
33 2ecl_A Ring-box protein 2; RNF 98.5 3.1E-08 1.1E-12 80.5 2.6 49 165-213 13-74 (81)
34 2l0b_A E3 ubiquitin-protein li 98.5 1.9E-08 6.6E-13 83.4 1.1 49 164-213 37-87 (91)
35 1v87_A Deltex protein 2; ring- 98.5 2.3E-08 7.9E-13 85.6 1.5 47 167-213 25-92 (114)
36 1jm7_B BARD1, BRCA1-associated 98.5 5.3E-08 1.8E-12 84.2 3.5 46 164-213 19-65 (117)
37 1e4u_A Transcriptional repress 98.5 7E-08 2.4E-12 78.3 3.7 52 162-213 6-60 (78)
38 3l11_A E3 ubiquitin-protein li 98.5 3.3E-08 1.1E-12 85.0 1.9 47 163-213 11-60 (115)
39 3ng2_A RNF4, snurf, ring finge 98.5 2.1E-08 7.2E-13 78.4 0.5 50 164-213 7-61 (71)
40 2ecn_A Ring finger protein 141 98.5 4.2E-08 1.4E-12 76.8 2.3 48 161-213 9-58 (70)
41 3fl2_A E3 ubiquitin-protein li 98.5 3.4E-08 1.2E-12 86.1 1.6 45 165-213 50-97 (124)
42 3lrq_A E3 ubiquitin-protein li 98.5 2.1E-08 7.1E-13 84.6 0.2 46 164-213 19-68 (100)
43 1chc_A Equine herpes virus-1 r 98.4 5.5E-08 1.9E-12 75.6 1.9 45 166-213 4-50 (68)
44 2ckl_A Polycomb group ring fin 98.4 4.1E-08 1.4E-12 83.6 0.5 46 164-213 12-60 (108)
45 2xeu_A Ring finger protein 4; 98.4 6E-08 2E-12 74.0 0.9 48 166-213 2-54 (64)
46 2y43_A E3 ubiquitin-protein li 98.4 4.4E-08 1.5E-12 82.0 0.2 45 165-213 20-67 (99)
47 3dpl_R Ring-box protein 1; ubi 98.3 1.6E-07 5.3E-12 80.7 2.5 47 166-212 36-98 (106)
48 1jm7_A BRCA1, breast cancer ty 98.3 1.2E-07 4.2E-12 80.5 1.6 45 165-213 19-68 (112)
49 2kr4_A Ubiquitin conjugation f 98.3 1.9E-07 6.6E-12 76.7 2.6 47 163-213 10-58 (85)
50 1rmd_A RAG1; V(D)J recombinati 98.3 4.9E-08 1.7E-12 84.1 -1.2 46 164-213 20-68 (116)
51 2ckl_B Ubiquitin ligase protei 98.3 8.1E-08 2.8E-12 87.8 0.1 47 163-213 50-100 (165)
52 2kre_A Ubiquitin conjugation f 98.3 2E-07 6.9E-12 79.0 2.2 47 163-213 25-73 (100)
53 1z6u_A NP95-like ring finger p 98.3 1.3E-07 4.6E-12 85.7 1.1 45 165-213 76-123 (150)
54 4ic3_A E3 ubiquitin-protein li 98.3 2.1E-07 7.2E-12 74.3 1.7 43 165-213 22-65 (74)
55 1wgm_A Ubiquitin conjugation f 98.3 3.6E-07 1.2E-11 77.2 3.1 47 163-213 18-67 (98)
56 3hct_A TNF receptor-associated 98.3 2.1E-07 7.1E-12 80.6 1.5 47 163-213 14-63 (118)
57 2c2l_A CHIP, carboxy terminus 98.2 3.9E-07 1.3E-11 88.6 3.0 47 163-213 204-253 (281)
58 3knv_A TNF receptor-associated 98.2 1.6E-07 5.6E-12 84.3 -0.5 46 163-212 27-75 (141)
59 2d8s_A Cellular modulator of i 98.1 2.1E-06 7.3E-11 69.9 5.3 48 164-213 12-68 (80)
60 4a0k_B E3 ubiquitin-protein li 98.1 3.4E-07 1.2E-11 80.1 0.4 48 166-213 47-110 (117)
61 2yu4_A E3 SUMO-protein ligase 98.1 5.4E-07 1.8E-11 75.2 1.4 45 163-211 3-58 (94)
62 2ecg_A Baculoviral IAP repeat- 97.9 2.4E-06 8.1E-11 68.1 1.9 43 165-213 23-66 (75)
63 2f42_A STIP1 homology and U-bo 97.9 2.2E-06 7.7E-11 80.1 2.0 48 162-213 101-151 (179)
64 2y1n_A E3 ubiquitin-protein li 97.9 2.4E-06 8.3E-11 88.6 2.4 43 167-213 332-377 (389)
65 3hcs_A TNF receptor-associated 97.9 2.2E-06 7.5E-11 78.5 1.4 47 163-213 14-63 (170)
66 4ap4_A E3 ubiquitin ligase RNF 97.8 2.4E-06 8.3E-11 73.9 0.0 49 165-213 70-123 (133)
67 2yho_A E3 ubiquitin-protein li 97.8 6E-06 2.1E-10 66.8 2.3 43 165-213 16-59 (79)
68 3t6p_A Baculoviral IAP repeat- 97.8 6.9E-06 2.3E-10 84.2 3.3 43 165-213 293-336 (345)
69 3htk_C E3 SUMO-protein ligase 97.8 5.4E-06 1.9E-10 81.6 1.9 48 162-213 176-230 (267)
70 2vje_A E3 ubiquitin-protein li 97.7 5.1E-06 1.7E-10 64.5 -0.1 45 165-213 6-55 (64)
71 2ea5_A Cell growth regulator w 97.6 3.7E-05 1.2E-09 60.5 4.1 44 164-213 12-56 (68)
72 2vje_B MDM4 protein; proto-onc 97.6 1E-05 3.6E-10 62.5 0.1 44 166-213 6-54 (63)
73 2ct0_A Non-SMC element 1 homol 97.4 4.9E-05 1.7E-09 61.1 2.4 45 165-212 13-61 (74)
74 1wim_A KIAA0161 protein; ring 97.3 4E-05 1.4E-09 63.4 0.6 47 165-212 3-61 (94)
75 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00017 5.8E-09 73.6 1.8 46 166-212 307-370 (381)
76 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00019 6.6E-09 55.1 1.5 44 166-213 5-57 (60)
77 2dgw_A Probable RNA-binding pr 96.8 0.0046 1.6E-07 49.7 8.4 70 62-134 7-76 (91)
78 2bay_A PRE-mRNA splicing facto 96.8 0.00021 7.1E-09 55.1 0.2 41 168-212 4-47 (61)
79 2dnh_A Bruno-like 5, RNA bindi 96.4 0.026 9E-07 46.2 10.7 71 63-134 13-83 (105)
80 3bs9_A Nucleolysin TIA-1 isofo 96.4 0.015 5E-07 46.0 8.6 72 62-134 3-75 (87)
81 2cq3_A RNA-binding protein 9; 96.4 0.023 7.8E-07 46.6 9.9 72 61-134 11-82 (103)
82 2dng_A Eukaryotic translation 96.3 0.025 8.5E-07 46.4 9.6 73 59-134 9-82 (103)
83 3vk6_A E3 ubiquitin-protein li 96.2 0.001 3.5E-08 56.3 0.7 65 169-244 3-70 (101)
84 2dgv_A HnRNP M, heterogeneous 96.2 0.028 9.6E-07 44.8 9.3 70 63-134 6-75 (92)
85 2d9p_A Polyadenylate-binding p 96.2 0.037 1.3E-06 45.3 10.1 70 63-134 13-82 (103)
86 2dnz_A Probable RNA-binding pr 96.1 0.034 1.2E-06 44.6 9.5 71 63-134 3-74 (95)
87 2ywk_A Putative RNA-binding pr 96.1 0.026 9E-07 45.3 8.8 72 62-134 13-84 (95)
88 2dgo_A Cytotoxic granule-assoc 96.1 0.04 1.4E-06 46.0 10.0 73 61-134 11-84 (115)
89 2jrs_A RNA-binding protein 39; 96.0 0.036 1.2E-06 46.3 9.6 74 60-134 21-95 (108)
90 2cqc_A Arginine/serine-rich sp 96.0 0.03 1E-06 44.8 8.8 71 63-134 13-84 (95)
91 2do4_A Squamous cell carcinoma 96.0 0.03 1E-06 45.6 8.8 71 63-134 15-85 (100)
92 1x4e_A RNA binding motif, sing 95.9 0.019 6.4E-07 45.3 7.0 71 63-134 3-74 (85)
93 1oo0_B CG8781-PA, drosophila Y 95.9 0.025 8.5E-07 46.9 8.1 73 61-134 22-95 (110)
94 1p27_B RNA-binding protein 8A; 95.9 0.052 1.8E-06 44.5 9.9 72 62-134 20-92 (106)
95 2do0_A HnRNP M, heterogeneous 95.9 0.048 1.6E-06 45.3 9.7 71 63-134 13-83 (114)
96 2fy1_A RNA-binding motif prote 95.9 0.031 1.1E-06 47.3 8.7 71 63-134 5-75 (116)
97 2dhg_A TRNA selenocysteine ass 95.9 0.042 1.4E-06 44.9 9.1 72 63-134 7-79 (104)
98 1x5o_A RNA binding motif, sing 95.8 0.071 2.4E-06 44.4 10.6 71 63-134 23-93 (114)
99 2cqi_A Nucleolysin TIAR; RNA r 95.8 0.042 1.4E-06 44.9 9.0 70 63-134 13-82 (103)
100 2la6_A RNA-binding protein FUS 95.8 0.072 2.5E-06 43.2 10.2 74 60-134 8-90 (99)
101 2dnm_A SRP46 splicing factor; 95.8 0.04 1.4E-06 45.0 8.6 71 63-134 11-82 (103)
102 2e5h_A Zinc finger CCHC-type a 95.7 0.032 1.1E-06 44.7 7.7 71 63-134 14-85 (94)
103 1wi8_A EIF-4B, eukaryotic tran 95.7 0.034 1.1E-06 45.7 7.9 73 59-134 9-83 (104)
104 3md1_A Nuclear and cytoplasmic 95.7 0.048 1.6E-06 42.5 8.4 68 66-134 2-70 (83)
105 3ulh_A THO complex subunit 4; 95.7 0.052 1.8E-06 44.6 9.1 72 62-134 26-97 (107)
106 3mdf_A Peptidyl-prolyl CIS-tra 95.7 0.034 1.2E-06 43.5 7.6 70 64-134 6-76 (85)
107 2cq0_A Eukaryotic translation 95.7 0.057 1.9E-06 44.1 9.2 71 63-134 13-84 (103)
108 2cph_A RNA binding motif prote 95.7 0.052 1.8E-06 44.5 8.9 72 62-134 12-86 (107)
109 2cpz_A CUG triplet repeat RNA- 95.6 0.091 3.1E-06 43.8 10.5 71 63-134 23-94 (115)
110 3lqv_A PRE-mRNA branch site pr 95.6 0.046 1.6E-06 45.6 8.5 71 61-134 4-74 (115)
111 1whw_A Hypothetical protein ri 95.5 0.11 3.8E-06 41.9 10.3 71 63-134 6-77 (99)
112 1x5s_A Cold-inducible RNA-bind 95.5 0.06 2E-06 43.8 8.6 71 63-134 10-81 (102)
113 2err_A Ataxin-2-binding protei 95.4 0.045 1.5E-06 45.7 7.6 70 63-134 27-96 (109)
114 4fxv_A ELAV-like protein 1; RN 95.4 0.068 2.3E-06 44.0 8.6 70 64-134 18-88 (99)
115 2ytc_A PRE-mRNA-splicing facto 95.4 0.067 2.3E-06 41.9 8.3 66 63-134 10-76 (85)
116 3nmr_A Cugbp ELAV-like family 95.4 0.056 1.9E-06 47.4 8.6 69 64-133 2-73 (175)
117 2dnp_A RNA-binding protein 14; 95.3 0.088 3E-06 41.9 8.9 64 63-134 7-70 (90)
118 1x5u_A Splicing factor 3B subu 95.3 0.079 2.7E-06 43.3 8.8 71 63-134 13-84 (105)
119 2div_A TRNA selenocysteine ass 95.3 0.069 2.4E-06 43.2 8.3 72 63-135 7-80 (99)
120 2kt5_A RNA and export factor-b 95.3 0.18 6.1E-06 42.7 11.2 71 63-134 33-103 (124)
121 2x1f_A MRNA 3'-END-processing 95.3 0.048 1.6E-06 44.1 7.2 69 65-134 2-71 (96)
122 2dgs_A DAZ-associated protein 95.2 0.11 3.8E-06 42.0 9.4 70 63-134 8-78 (99)
123 2dgp_A Bruno-like 4, RNA bindi 95.2 0.075 2.6E-06 43.5 8.4 72 60-132 8-80 (106)
124 4a8x_A RNA-binding protein wit 95.2 0.047 1.6E-06 42.9 6.8 70 64-134 3-74 (88)
125 2dgt_A RNA-binding protein 30; 95.2 0.14 4.9E-06 40.8 9.8 64 63-134 8-71 (92)
126 2cqb_A Peptidyl-prolyl CIS-tra 95.1 0.097 3.3E-06 42.5 8.8 71 63-134 10-81 (102)
127 2kxn_B Transformer-2 protein h 95.1 0.087 3E-06 45.6 8.9 71 63-134 44-115 (129)
128 1x5t_A Splicing factor 3B subu 95.1 0.044 1.5E-06 44.0 6.5 70 64-134 4-75 (96)
129 2cpj_A Non-POU domain-containi 95.1 0.12 4.2E-06 41.8 9.2 66 63-134 13-78 (99)
130 3ex7_B RNA-binding protein 8A; 95.0 0.069 2.4E-06 45.2 7.9 73 61-134 18-91 (126)
131 2xs2_A Deleted in azoospermia- 95.0 0.047 1.6E-06 44.6 6.5 69 63-134 7-75 (102)
132 2cpf_A RNA binding motif prote 95.0 0.062 2.1E-06 43.4 7.1 70 64-134 4-77 (98)
133 1fxl_A Paraneoplastic encephal 94.9 0.089 3E-06 45.6 8.4 69 65-134 2-71 (167)
134 2khc_A Testis-specific RNP-typ 94.9 0.12 4.1E-06 43.2 8.9 71 63-134 38-109 (118)
135 2j76_E EIF-4B, EIF4B, eukaryot 94.8 0.039 1.3E-06 45.2 5.6 70 62-134 16-87 (100)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.8 0.085 2.9E-06 45.2 8.0 71 63-134 61-132 (140)
137 2fc9_A NCL protein; structure 94.8 0.21 7.3E-06 40.4 9.9 69 62-134 12-80 (101)
138 1rk8_A CG8781-PA, CG8781-PA pr 94.8 0.13 4.5E-06 46.0 9.3 72 62-134 69-141 (165)
139 2cpe_A RNA-binding protein EWS 94.7 0.083 2.9E-06 43.8 7.3 72 63-134 13-92 (113)
140 3md3_A Nuclear and cytoplasmic 94.7 0.094 3.2E-06 45.4 8.0 67 67-134 2-68 (166)
141 3ucg_A Polyadenylate-binding p 94.7 0.15 5E-06 40.2 8.4 68 65-134 6-74 (89)
142 2krb_A Eukaryotic translation 94.6 0.077 2.6E-06 41.5 6.7 68 65-134 1-74 (81)
143 1p1t_A Cleavage stimulation fa 94.6 0.077 2.6E-06 43.2 6.9 70 64-134 7-77 (104)
144 1x4a_A Splicing factor, argini 94.6 0.12 4.2E-06 42.6 8.1 69 63-134 20-88 (109)
145 4f25_A Polyadenylate-binding p 94.5 0.13 4.4E-06 43.3 8.2 68 65-134 5-72 (115)
146 3nmr_A Cugbp ELAV-like family 94.5 0.25 8.5E-06 43.2 10.5 70 64-134 94-163 (175)
147 2cqd_A RNA-binding region cont 94.5 0.14 4.8E-06 42.7 8.4 70 63-134 15-85 (116)
148 2dfs_A Myosin-5A; myosin-V, in 94.5 0.39 1.3E-05 55.9 14.8 66 378-443 984-1049(1080)
149 1h2v_Z 20 kDa nuclear CAP bind 94.5 0.18 6.1E-06 44.5 9.4 71 63-134 37-108 (156)
150 2dis_A Unnamed protein product 94.4 0.12 4E-06 42.6 7.5 71 64-134 7-81 (109)
151 2dh8_A DAZ-associated protein 94.4 0.16 5.4E-06 41.6 8.2 70 63-134 14-84 (105)
152 1x4h_A RNA-binding protein 28; 94.3 0.18 6.3E-06 41.4 8.6 71 63-134 13-90 (111)
153 2dgu_A Heterogeneous nuclear r 94.3 0.088 3E-06 43.1 6.5 63 64-134 10-72 (103)
154 2fc8_A NCL protein; structure 94.3 0.18 6.1E-06 40.9 8.3 68 63-134 13-81 (102)
155 2db1_A Heterogeneous nuclear r 94.3 0.15 5E-06 43.3 8.0 72 62-134 14-87 (118)
156 1x4g_A Nucleolysin TIAR; struc 94.1 0.12 4.3E-06 42.6 7.2 65 64-134 24-88 (109)
157 1u6f_A Tcubp1, RNA-binding pro 94.1 0.24 8.3E-06 42.5 9.3 71 63-134 40-111 (139)
158 2hzc_A Splicing factor U2AF 65 94.1 0.11 3.7E-06 40.8 6.5 66 63-134 4-79 (87)
159 2cpy_A RNA-binding protein 12; 94.1 0.1 3.5E-06 43.8 6.6 70 63-134 13-83 (114)
160 3md3_A Nuclear and cytoplasmic 94.1 0.24 8.1E-06 42.8 9.3 71 63-134 85-156 (166)
161 2kn4_A Immunoglobulin G-bindin 94.0 0.52 1.8E-05 41.2 11.5 71 63-134 68-139 (158)
162 2cpi_A CCR4-NOT transcription 94.0 0.2 6.9E-06 41.7 8.3 72 62-134 12-90 (111)
163 2la4_A Nuclear and cytoplasmic 94.0 0.16 5.4E-06 41.2 7.4 66 63-134 25-90 (101)
164 2jwn_A Embryonic polyadenylate 93.9 0.18 6E-06 42.5 7.8 69 64-134 35-104 (124)
165 1b7f_A Protein (SXL-lethal pro 93.8 0.27 9.3E-06 42.7 9.1 71 63-134 87-158 (168)
166 2g4b_A Splicing factor U2AF 65 93.8 0.23 7.7E-06 43.5 8.6 71 63-134 92-163 (172)
167 3s7r_A Heterogeneous nuclear r 93.8 0.28 9.7E-06 38.5 8.4 69 63-133 9-78 (87)
168 1fxl_A Paraneoplastic encephal 93.7 0.32 1.1E-05 42.0 9.4 70 64-134 87-157 (167)
169 2dgx_A KIAA0430 protein; RRM d 93.7 0.16 5.4E-06 41.1 6.9 71 61-134 5-79 (96)
170 2lmi_A GRSF-1, G-rich sequence 93.7 0.15 5.2E-06 42.2 6.9 72 62-134 8-81 (107)
171 1s79_A Lupus LA protein; RRM, 93.7 0.22 7.4E-06 41.4 7.8 69 64-134 10-78 (103)
172 2e44_A Insulin-like growth fac 93.6 0.37 1.3E-05 38.5 9.0 68 63-134 13-81 (96)
173 1wg1_A KIAA1579 protein, homol 93.6 0.11 3.6E-06 41.4 5.6 64 64-134 4-67 (88)
174 1why_A Hypothetical protein ri 93.6 0.18 6.3E-06 40.6 7.1 64 64-133 16-79 (97)
175 2cqg_A TDP-43, TAR DNA-binding 93.6 0.41 1.4E-05 38.8 9.3 65 61-126 11-76 (103)
176 2lxi_A RNA-binding protein 10; 93.6 0.062 2.1E-06 43.4 4.2 69 65-133 1-71 (91)
177 2qfj_A FBP-interacting repress 93.6 0.18 6.1E-06 45.9 7.8 70 64-134 27-97 (216)
178 1b7f_A Protein (SXL-lethal pro 93.5 0.14 4.8E-06 44.6 6.7 69 65-134 3-72 (168)
179 2dnq_A RNA-binding protein 4B; 93.5 0.31 1.1E-05 38.7 8.2 64 63-134 6-69 (90)
180 2cpd_A Apobec-1 stimulating pr 93.5 0.31 1.1E-05 39.4 8.3 65 63-134 13-78 (99)
181 2cq4_A RNA binding motif prote 93.5 0.17 5.8E-06 42.1 6.8 69 64-134 24-93 (114)
182 1wg5_A Heterogeneous nuclear r 93.3 0.43 1.5E-05 39.1 9.0 71 63-134 13-83 (104)
183 3s8s_A Histone-lysine N-methyl 93.3 0.39 1.3E-05 40.3 8.8 69 65-134 6-75 (110)
184 2hvz_A Splicing factor, argini 93.3 0.14 4.8E-06 41.5 5.9 64 66-134 1-64 (101)
185 2qfj_A FBP-interacting repress 93.1 0.38 1.3E-05 43.7 9.3 70 64-134 124-194 (216)
186 2mss_A Protein (musashi1); RNA 93.1 0.18 6.1E-06 38.5 5.9 65 68-134 2-67 (75)
187 1nu4_A U1A RNA binding domain; 93.0 0.1 3.6E-06 41.8 4.7 68 64-134 7-78 (97)
188 2dnn_A RNA-binding protein 12; 93.0 0.16 5.6E-06 42.8 6.1 68 64-134 15-82 (109)
189 1x4c_A Splicing factor, argini 93.0 0.29 9.9E-06 40.4 7.5 66 62-134 12-77 (108)
190 3na7_A HP0958; flagellar bioge 92.9 3.6 0.00012 39.7 16.4 36 397-432 123-158 (256)
191 1l3k_A Heterogeneous nuclear r 92.9 0.33 1.1E-05 43.4 8.4 71 62-134 10-81 (196)
192 2cqp_A RNA-binding protein 12; 92.8 0.42 1.4E-05 38.3 8.2 70 64-134 14-84 (98)
193 2yh0_A Splicing factor U2AF 65 92.8 0.45 1.5E-05 42.5 9.2 71 63-134 112-183 (198)
194 1wez_A HnRNP H', FTP-3, hetero 92.8 0.44 1.5E-05 39.3 8.4 69 63-134 13-81 (102)
195 3p5t_L Cleavage and polyadenyl 92.8 0.24 8.1E-06 39.5 6.5 68 67-134 3-72 (90)
196 2ki2_A SS-DNA binding protein 92.8 0.21 7.3E-06 39.4 6.2 67 66-134 2-69 (90)
197 3ns6_A Eukaryotic translation 92.8 0.14 4.7E-06 42.0 5.1 71 63-134 4-81 (100)
198 2f3j_A RNA and export factor b 92.7 0.27 9.2E-06 44.9 7.6 71 63-134 86-156 (177)
199 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.12 4E-06 42.7 4.6 33 166-202 2-38 (101)
200 2ek1_A RNA-binding protein 12; 92.7 0.27 9.1E-06 39.2 6.7 69 65-134 15-84 (95)
201 2lkz_A RNA-binding protein 5; 92.7 0.21 7.1E-06 41.1 6.1 69 64-132 8-78 (95)
202 2i2y_A Fusion protein consists 92.5 0.49 1.7E-05 41.3 8.7 67 63-134 71-137 (150)
203 3ghg_A Fibrinogen alpha chain; 92.5 1.8 6.1E-05 46.1 14.2 47 374-420 113-159 (562)
204 3n9u_C Cleavage and polyadenyl 92.4 0.39 1.3E-05 42.9 8.2 71 64-134 54-126 (156)
205 3oja_B Anopheles plasmodium-re 92.4 2.2 7.5E-05 45.4 15.3 9 427-435 561-569 (597)
206 2nlw_A Eukaryotic translation 92.2 0.39 1.3E-05 39.5 7.2 70 63-134 13-88 (105)
207 2lea_A Serine/arginine-rich sp 92.0 0.18 6E-06 43.9 5.1 71 63-134 45-116 (135)
208 2hgl_A HNRPF protein, heteroge 92.0 0.39 1.3E-05 42.2 7.4 72 62-134 41-114 (136)
209 3beg_B Splicing factor, argini 92.0 0.34 1.2E-05 40.7 6.8 66 64-136 15-80 (115)
210 2cpx_A Hypothetical protein FL 91.9 0.83 2.8E-05 37.7 9.1 69 63-134 23-94 (115)
211 2hgm_A HNRPF protein, heteroge 91.9 0.53 1.8E-05 40.9 8.1 69 63-134 40-110 (126)
212 3nw0_A Non-structural maintena 91.9 0.06 2E-06 52.1 2.2 44 166-212 179-226 (238)
213 3bas_A Myosin heavy chain, str 91.8 2.4 8.2E-05 34.7 11.5 68 369-440 19-86 (89)
214 2jvo_A Nucleolar protein 3; nu 91.8 0.41 1.4E-05 39.8 7.0 64 63-134 29-92 (108)
215 1uaw_A Mouse-musashi-1; RNP-ty 91.8 0.41 1.4E-05 36.4 6.5 66 67-134 2-68 (77)
216 1wf1_A RNA-binding protein RAL 91.7 0.62 2.1E-05 38.4 8.0 66 61-134 23-89 (110)
217 3hnw_A Uncharacterized protein 91.7 3 0.0001 37.0 12.8 66 371-440 68-133 (138)
218 2e5j_A Methenyltetrahydrofolat 91.7 0.92 3.1E-05 36.4 8.9 67 63-134 17-83 (97)
219 3ol1_A Vimentin; structural ge 91.6 2.3 7.9E-05 36.6 11.8 33 403-435 87-119 (119)
220 1fjc_A Nucleolin RBD2, protein 91.5 0.26 8.9E-06 39.4 5.4 67 63-134 14-80 (96)
221 2xnq_A Nuclear polyadenylated 91.3 0.81 2.8E-05 37.1 8.1 65 62-134 19-84 (97)
222 2adc_A Polypyrimidine tract-bi 91.2 0.49 1.7E-05 44.2 7.6 67 63-134 32-99 (229)
223 3q2s_C Cleavage and polyadenyl 91.1 0.66 2.2E-05 44.0 8.6 72 63-134 66-139 (229)
224 1qm9_A Polypyrimidine tract-bi 91.1 0.57 1.9E-05 42.2 7.8 66 64-133 119-184 (198)
225 3r27_A HnRNP L, heterogeneous 91.0 0.7 2.4E-05 38.7 7.6 63 64-132 20-82 (100)
226 3smz_A Protein raver-1, ribonu 91.0 0.66 2.2E-05 44.4 8.6 71 63-134 182-253 (284)
227 1x4b_A Heterogeneous nuclear r 90.8 0.51 1.7E-05 39.2 6.6 69 64-134 26-95 (116)
228 3egn_A RNA-binding protein 40; 90.6 0.9 3.1E-05 39.2 8.3 70 63-134 43-119 (143)
229 4f02_A Polyadenylate-binding p 90.4 0.73 2.5E-05 42.5 8.0 69 64-134 102-170 (213)
230 1l3k_A Heterogeneous nuclear r 90.2 1.3 4.5E-05 39.3 9.3 69 64-134 103-172 (196)
231 1qm9_A Polypyrimidine tract-bi 90.2 0.33 1.1E-05 43.8 5.3 66 64-134 2-68 (198)
232 1wel_A RNA-binding protein 12; 90.2 1.1 3.6E-05 37.9 8.2 72 61-134 21-93 (124)
233 3mq9_A Bone marrow stromal ant 89.9 5.2 0.00018 41.4 14.9 69 371-443 397-469 (471)
234 1whx_A Hypothetical protein ri 89.8 0.57 2E-05 39.0 6.1 65 64-134 9-73 (111)
235 4f02_A Polyadenylate-binding p 89.7 1.1 3.8E-05 41.2 8.6 71 63-134 13-84 (213)
236 2cqh_A IGF-II mRNA-binding pro 89.6 0.42 1.4E-05 38.0 4.9 66 63-134 6-72 (93)
237 3smz_A Protein raver-1, ribonu 89.6 1.1 3.9E-05 42.7 8.9 70 64-134 94-164 (284)
238 2ghp_A U4/U6 snRNA-associated 89.5 0.68 2.3E-05 44.5 7.3 70 63-134 208-280 (292)
239 2kvi_A Nuclear polyadenylated 89.5 1.2 4E-05 35.7 7.6 63 64-134 9-72 (96)
240 3ghg_A Fibrinogen alpha chain; 89.5 4.6 0.00016 43.0 13.8 27 323-349 50-76 (562)
241 2ocy_A RAB guanine nucleotide 89.4 9.2 0.00031 34.5 14.0 22 417-438 122-143 (154)
242 3sde_A Paraspeckle component 1 89.4 1.5 5.3E-05 41.7 9.6 68 64-132 95-162 (261)
243 1wex_A Hypothetical protein (r 89.4 1.8 6.3E-05 35.9 8.9 62 64-131 14-75 (104)
244 2cjk_A Nuclear polyadenylated 89.3 0.52 1.8E-05 40.9 5.7 68 64-132 2-73 (167)
245 2cq1_A PTB-like protein L; RRM 88.9 1.6 5.5E-05 36.1 8.1 60 64-129 14-73 (101)
246 2adc_A Polypyrimidine tract-bi 88.8 1.3 4.4E-05 41.3 8.4 66 64-133 150-215 (229)
247 1uw4_A UPF3X; nonsense mediate 88.7 1.5 5.2E-05 36.2 7.7 80 68-152 4-86 (91)
248 3na7_A HP0958; flagellar bioge 88.4 7.1 0.00024 37.6 13.6 65 371-435 104-168 (256)
249 2ghp_A U4/U6 snRNA-associated 88.1 0.64 2.2E-05 44.6 5.9 71 64-134 116-186 (292)
250 2cjk_A Nuclear polyadenylated 88.0 0.92 3.1E-05 39.3 6.4 68 65-134 87-155 (167)
251 2rs2_A Musashi-1, RNA-binding 87.9 0.71 2.4E-05 38.3 5.3 69 63-133 23-92 (109)
252 3sde_A Paraspeckle component 1 87.6 1.2 4.2E-05 42.4 7.6 66 63-134 20-85 (261)
253 1iqt_A AUF1, heterogeneous nuc 87.4 0.61 2.1E-05 35.3 4.3 65 68-134 2-67 (75)
254 2e5g_A U6 snRNA-specific termi 87.3 2.6 8.9E-05 33.4 8.3 65 64-134 7-71 (94)
255 2fxo_A Myosin heavy chain, car 87.3 14 0.00047 32.0 14.8 16 422-437 109-124 (129)
256 2dha_A FLJ20171 protein; RRM d 87.0 0.99 3.4E-05 38.8 5.9 71 63-134 21-94 (123)
257 2m2b_A RNA-binding protein 10; 86.9 1 3.4E-05 38.5 5.9 66 63-130 21-89 (131)
258 2w83_C C-JUN-amino-terminal ki 86.7 4.8 0.00016 32.1 9.0 66 321-414 8-73 (77)
259 1fj7_A Nucleolin RBD1, protein 86.7 0.58 2E-05 37.8 4.0 68 64-134 16-84 (101)
260 2g4b_A Splicing factor U2AF 65 86.6 1.5 5.2E-05 38.0 7.1 65 64-134 3-77 (172)
261 2voo_A Lupus LA protein; RNA-b 86.5 1.8 6E-05 39.9 7.7 67 65-133 109-175 (193)
262 2dfs_A Myosin-5A; myosin-V, in 86.0 15 0.00052 42.7 16.7 45 371-418 991-1035(1080)
263 3pgw_A U1-A; protein-RNA compl 85.9 1.6 5.5E-05 41.6 7.3 65 64-133 206-270 (282)
264 2dnl_A Cytoplasmic polyadenyla 85.8 0.92 3.1E-05 37.7 4.9 67 64-132 7-80 (114)
265 3pgw_S U1-70K; protein-RNA com 85.7 1.5 5E-05 45.8 7.4 69 65-134 102-171 (437)
266 2lcw_A RNA-binding protein FUS 85.7 0.16 5.5E-06 42.4 0.0 70 64-134 6-84 (116)
267 3oja_B Anopheles plasmodium-re 85.4 14 0.00048 39.1 15.2 15 424-438 565-579 (597)
268 3tnu_B Keratin, type II cytosk 85.2 6.3 0.00022 34.2 10.2 53 345-399 12-64 (129)
269 1fje_B Nucleolin RBD12, protei 85.1 1.5 5.2E-05 38.3 6.3 66 64-134 98-163 (175)
270 1x4d_A Matrin 3; structural ge 85.0 2 6.8E-05 35.7 6.6 63 63-131 13-76 (102)
271 3tnu_A Keratin, type I cytoske 85.0 5.5 0.00019 34.7 9.7 11 345-355 14-24 (131)
272 1wf0_A TDP-43, TAR DNA-binding 84.7 0.96 3.3E-05 35.5 4.3 54 64-122 4-57 (88)
273 2jvr_A Nucleolar protein 3; RN 84.6 1.5 5.1E-05 37.0 5.7 69 63-134 26-94 (111)
274 3pgw_A U1-A; protein-RNA compl 84.4 3.1 0.00011 39.5 8.6 68 64-134 8-79 (282)
275 1sjr_A Polypyrimidine tract-bi 84.1 3.8 0.00013 37.3 8.5 67 64-134 45-111 (164)
276 2a3j_A U1 small nuclear ribonu 83.5 3.7 0.00013 35.3 7.9 68 64-134 28-99 (127)
277 1gs9_A Apolipoprotein E, APOE4 83.3 3.6 0.00012 37.4 8.1 100 327-434 56-160 (165)
278 1sjq_A Polypyrimidine tract-bi 83.2 4 0.00014 34.2 7.8 60 64-129 15-74 (105)
279 2hgn_A Heterogeneous nuclear r 83.1 0.79 2.7E-05 40.4 3.5 69 63-134 44-112 (139)
280 2zqm_A Prefoldin beta subunit 83.1 14 0.00046 30.8 11.2 42 392-437 70-111 (117)
281 3d2w_A TAR DNA-binding protein 82.7 2.4 8.1E-05 33.8 5.9 59 64-131 10-68 (89)
282 2e5i_A Heterogeneous nuclear r 82.6 7.3 0.00025 33.5 9.4 62 68-134 28-89 (124)
283 2yh0_A Splicing factor U2AF 65 82.0 2.7 9.2E-05 37.3 6.7 64 65-134 4-77 (198)
284 2ad9_A Polypyrimidine tract-bi 82.0 2.9 0.0001 35.8 6.6 61 64-130 30-90 (119)
285 2jee_A YIIU; FTSZ, septum, coi 82.0 9.5 0.00032 30.8 9.0 13 393-405 56-68 (81)
286 1nfn_A Apolipoprotein E3; lipi 81.9 7.7 0.00026 36.0 9.9 28 325-352 54-81 (191)
287 2pe8_A Splicing factor 45; RRM 81.8 7.1 0.00024 32.2 8.8 70 64-134 7-83 (105)
288 2l08_A Regulator of nonsense t 81.2 0.83 2.8E-05 38.3 2.7 70 65-135 9-81 (97)
289 3oja_A Leucine-rich immune mol 80.7 55 0.0019 33.7 17.3 18 420-437 459-476 (487)
290 2cq2_A Hypothetical protein LO 80.1 2.9 9.9E-05 35.7 5.8 66 65-136 25-93 (114)
291 1x5p_A Negative elongation fac 79.8 9.3 0.00032 30.3 8.6 63 64-134 14-76 (97)
292 3vkg_A Dynein heavy chain, cyt 78.1 41 0.0014 43.6 17.4 21 68-88 1333-1353(3245)
293 2l9w_A U4/U6 snRNA-associated- 78.0 5.4 0.00018 34.4 6.7 67 63-134 19-89 (117)
294 3tyt_A Heterogeneous nuclear r 78.0 4.3 0.00015 37.4 6.8 71 64-135 122-193 (205)
295 1x4f_A Matrin 3; structural ge 77.8 3.5 0.00012 35.0 5.6 62 64-131 24-86 (112)
296 1i84_S Smooth muscle myosin he 76.5 8.7 0.0003 45.0 10.3 12 65-76 457-468 (1184)
297 2eqb_B RAB guanine nucleotide 76.3 33 0.0011 28.6 13.4 20 337-356 15-34 (97)
298 2ysm_A Myeloid/lymphoid or mix 75.8 4.2 0.00014 34.1 5.5 64 165-238 5-77 (111)
299 3v43_A Histone acetyltransfera 75.5 3.6 0.00012 34.8 5.0 64 165-237 3-84 (112)
300 2kwj_A Zinc finger protein DPF 75.4 3 0.0001 35.4 4.5 61 168-237 2-80 (114)
301 2b9c_A Striated-muscle alpha t 75.4 33 0.0011 30.5 11.6 96 338-437 42-142 (147)
302 3mq9_A Bone marrow stromal ant 75.4 67 0.0023 32.9 15.8 17 369-385 402-418 (471)
303 2e7s_A RAB guanine nucleotide 75.4 12 0.00042 33.0 8.5 22 418-439 111-132 (135)
304 2avr_X Adhesion A; antiparalle 75.0 40 0.0014 29.1 12.1 31 404-434 69-99 (119)
305 3cve_A Homer protein homolog 1 74.0 29 0.001 27.4 9.5 12 419-430 48-59 (72)
306 1wle_A Seryl-tRNA synthetase; 73.6 35 0.0012 36.3 13.2 21 420-440 133-153 (501)
307 3cvf_A Homer-3, homer protein 73.4 14 0.00048 29.7 7.7 17 337-353 2-18 (79)
308 1fje_B Nucleolin RBD12, protei 72.9 2.3 7.7E-05 37.2 3.3 69 63-134 11-80 (175)
309 4dci_A Uncharacterized protein 72.8 21 0.00073 32.0 9.6 37 422-461 82-118 (150)
310 1gd2_E Transcription factor PA 72.6 13 0.00043 29.2 7.1 10 340-349 18-27 (70)
311 2jee_A YIIU; FTSZ, septum, coi 72.6 36 0.0012 27.4 10.9 39 373-411 22-60 (81)
312 3hnw_A Uncharacterized protein 72.5 46 0.0016 29.2 11.7 14 373-386 77-90 (138)
313 2bz2_A Negative elongation fac 72.3 12 0.00041 31.5 7.6 64 63-134 37-100 (121)
314 3v4m_A Splicing factor U2AF 65 71.9 6.2 0.00021 32.6 5.6 69 65-134 5-86 (105)
315 1deq_A Fibrinogen (alpha chain 71.9 79 0.0027 32.4 14.6 45 371-415 113-157 (390)
316 3s4r_A Vimentin; alpha-helix, 71.7 30 0.001 28.4 9.6 13 386-398 24-36 (93)
317 3a7p_A Autophagy protein 16; c 71.4 34 0.0012 30.8 10.5 46 369-414 73-118 (152)
318 3tyt_A Heterogeneous nuclear r 70.9 8.1 0.00028 35.6 6.8 66 64-134 3-69 (205)
319 3iv1_A Tumor susceptibility ge 70.9 39 0.0013 27.1 11.3 35 379-413 19-53 (78)
320 1ik9_A DNA repair protein XRCC 70.8 32 0.0011 32.5 10.9 15 373-387 155-169 (213)
321 2v71_A Nuclear distribution pr 70.1 70 0.0024 29.7 16.7 8 426-433 132-139 (189)
322 1f5n_A Interferon-induced guan 69.4 45 0.0015 36.1 13.1 16 423-438 566-581 (592)
323 1wil_A KIAA1045 protein; ring 68.8 7.5 0.00026 31.8 5.1 38 162-201 10-47 (89)
324 3s9g_A Protein hexim1; cyclin 68.7 45 0.0015 27.8 9.9 49 369-417 35-83 (104)
325 1x79_B RAB GTPase binding effe 68.6 55 0.0019 27.9 11.9 73 372-447 14-90 (112)
326 2b9c_A Striated-muscle alpha t 68.5 64 0.0022 28.6 14.2 20 423-442 100-119 (147)
327 3mq7_A Bone marrow stromal ant 68.2 57 0.002 28.0 13.1 17 425-441 79-95 (121)
328 1uii_A Geminin; human, DNA rep 68.0 38 0.0013 27.4 9.1 29 372-400 47-75 (83)
329 1go4_E MAD1 (mitotic arrest de 68.0 29 0.00099 29.1 8.7 28 372-399 13-40 (100)
330 2v4h_A NF-kappa-B essential mo 67.9 56 0.0019 27.8 11.3 17 423-439 89-105 (110)
331 1fxk_A Prefoldin; archaeal pro 67.4 49 0.0017 26.9 12.3 41 392-436 65-105 (107)
332 1i84_S Smooth muscle myosin he 67.2 32 0.0011 40.3 12.1 9 172-180 522-530 (1184)
333 4etp_A Kinesin-like protein KA 67.1 7.9 0.00027 40.0 6.3 37 372-408 4-40 (403)
334 3zzy_A Polypyrimidine tract-bi 65.1 23 0.0008 30.7 8.1 65 66-134 29-93 (130)
335 1deq_A Fibrinogen (alpha chain 64.9 46 0.0016 34.1 11.2 73 336-408 55-129 (390)
336 3ue2_A Poly(U)-binding-splicin 64.7 16 0.00056 30.8 6.9 70 64-134 19-98 (118)
337 1jmt_A Splicing factor U2AF 35 64.2 11 0.00038 30.9 5.6 63 72-134 22-95 (104)
338 1owx_A Lupus LA protein, SS-B, 63.8 19 0.00064 31.0 7.1 59 64-128 17-77 (121)
339 2wvr_A Geminin; DNA replicatio 63.7 50 0.0017 31.0 10.3 35 371-405 115-149 (209)
340 1f5n_A Interferon-induced guan 63.3 79 0.0027 34.2 13.5 13 321-333 437-449 (592)
341 3u1l_A PRE-mRNA-splicing facto 63.3 13 0.00043 35.8 6.6 64 63-132 132-204 (240)
342 2a01_A Apolipoprotein A-I; fou 63.1 96 0.0033 29.4 12.8 34 320-353 93-126 (243)
343 3lss_A Seryl-tRNA synthetase; 63.1 30 0.001 36.6 9.9 21 420-440 121-141 (484)
344 1ic2_A Tropomyosin alpha chain 63.1 54 0.0019 25.9 10.9 9 404-412 46-54 (81)
345 2zxx_A Geminin; coiled-coil, c 62.9 58 0.002 26.1 9.3 27 372-398 35-61 (79)
346 3qne_A Seryl-tRNA synthetase, 62.5 37 0.0013 36.0 10.5 21 420-440 88-108 (485)
347 2dq0_A Seryl-tRNA synthetase; 62.3 47 0.0016 34.7 11.3 66 371-440 38-106 (455)
348 4fla_A Regulation of nuclear P 61.4 90 0.0031 27.8 12.5 70 368-438 76-145 (152)
349 3cvf_A Homer-3, homer protein 60.9 63 0.0021 25.9 9.6 10 420-429 55-64 (79)
350 3tnu_B Keratin, type II cytosk 60.6 80 0.0027 27.0 10.7 52 369-420 41-96 (129)
351 4h22_A Leucine-rich repeat fli 60.3 76 0.0026 26.7 10.1 11 424-434 72-82 (103)
352 2nrj_A HBL B protein; enteroto 60.2 86 0.0029 31.5 12.4 92 342-441 102-193 (346)
353 3s84_A Apolipoprotein A-IV; fo 60.1 1.3E+02 0.0044 29.2 15.7 19 323-341 30-48 (273)
354 2lri_C Autoimmune regulator; Z 59.8 7.7 0.00026 29.9 3.5 44 164-211 9-58 (66)
355 2j8a_A Histone-lysine N-methyl 59.6 25 0.00084 31.1 7.1 68 66-134 3-85 (136)
356 2efr_A General control protein 59.0 1E+02 0.0035 27.7 17.0 8 406-413 105-112 (155)
357 3r2p_A Apolipoprotein A-I; amp 58.8 1E+02 0.0036 27.8 12.4 7 268-274 15-21 (185)
358 3s6e_A RNA-binding protein 39; 57.4 23 0.0008 29.7 6.5 68 64-134 6-82 (114)
359 1ses_A Seryl-tRNA synthetase; 57.2 40 0.0014 34.9 9.5 67 370-440 34-101 (421)
360 3n7n_E Monopolin complex subun 57.1 6 0.00021 32.7 2.6 64 336-404 13-76 (95)
361 1j1e_C Troponin I, TNI; THIN f 57.0 44 0.0015 30.8 8.7 36 402-437 68-106 (180)
362 1m1j_A Fibrinogen alpha subuni 56.8 2E+02 0.0067 30.3 15.4 45 374-418 114-158 (491)
363 3nmd_A CGMP dependent protein 56.4 41 0.0014 26.5 7.1 16 419-434 49-64 (72)
364 3swy_A Cyclic nucleotide-gated 56.2 48 0.0017 23.9 6.9 9 424-432 37-45 (46)
365 3swf_A CGMP-gated cation chann 56.1 52 0.0018 26.1 7.7 39 397-435 12-50 (74)
366 4gne_A Histone-lysine N-methyl 55.2 24 0.00082 29.8 6.1 65 163-243 11-82 (107)
367 2w83_C C-JUN-amino-terminal ki 55.1 78 0.0027 25.2 9.7 62 373-434 11-75 (77)
368 1wt6_A Myotonin-protein kinase 54.9 82 0.0028 25.3 10.0 12 424-435 59-70 (81)
369 3ol1_A Vimentin; structural ge 54.8 98 0.0034 26.2 11.1 11 345-355 17-27 (119)
370 3o0z_A RHO-associated protein 54.5 1.3E+02 0.0043 27.4 16.7 8 435-442 140-147 (168)
371 3o36_A Transcription intermedi 54.3 12 0.00041 34.0 4.5 43 167-213 4-52 (184)
372 2dit_A HIV TAT specific factor 53.5 51 0.0018 26.7 8.0 68 63-134 13-91 (112)
373 1ytz_T Troponin T; muscle, THI 53.0 1E+02 0.0035 25.9 9.8 16 421-436 74-89 (107)
374 1m1j_B Fibrinogen beta chain; 52.8 91 0.0031 32.8 11.4 20 421-440 179-198 (464)
375 1m1j_B Fibrinogen beta chain; 52.5 2.3E+02 0.0078 29.8 17.6 25 420-444 171-195 (464)
376 3vkg_A Dynein heavy chain, cyt 51.8 3.8E+02 0.013 35.0 18.5 7 237-243 1653-1659(3245)
377 3bas_A Myosin heavy chain, str 51.1 95 0.0033 25.0 10.6 19 372-390 36-54 (89)
378 3iox_A AGI/II, PA; alpha helix 51.0 2E+02 0.0067 30.5 13.4 108 316-424 3-112 (497)
379 1gd2_E Transcription factor PA 50.7 51 0.0017 25.7 6.9 29 371-399 29-57 (70)
380 2q6q_A Spindle POLE BODY compo 50.7 87 0.003 24.4 9.1 59 373-435 5-63 (74)
381 4h22_A Leucine-rich repeat fli 50.5 1.1E+02 0.0037 25.7 9.2 19 425-443 66-84 (103)
382 3trt_A Vimentin; cytoskeleton, 50.0 86 0.0029 24.2 10.4 33 322-354 9-41 (77)
383 3u06_A Protein claret segregat 49.5 21 0.00074 36.9 6.0 25 375-399 7-31 (412)
384 3mtu_A Tropomyosin alpha-1 cha 49.2 91 0.0031 24.4 8.3 51 384-438 15-65 (75)
385 2l7b_A Apolipoprotein E, APO-E 49.2 40 0.0014 33.5 7.7 24 326-349 63-86 (307)
386 2lf0_A Uncharacterized protein 49.0 33 0.0011 29.6 5.9 43 370-412 9-56 (123)
387 2k48_A Nucleoprotein; viral pr 48.7 1E+02 0.0035 26.0 8.7 17 422-438 87-103 (107)
388 3iv1_A Tumor susceptibility ge 48.7 1E+02 0.0035 24.6 10.0 20 390-409 44-63 (78)
389 3nmd_A CGMP dependent protein 48.6 65 0.0022 25.4 7.2 21 419-439 42-62 (72)
390 1m1j_C Fibrinogen gamma chain; 48.6 1.8E+02 0.0063 29.9 12.8 19 422-440 117-135 (409)
391 3u5n_A E3 ubiquitin-protein li 48.5 10 0.00035 35.2 3.1 43 166-212 6-54 (207)
392 3n7c_A ABR034WP; nuclear pore 48.4 18 0.00063 31.4 4.5 103 19-128 8-116 (130)
393 1rrp_B Nuclear pore complex pr 48.3 59 0.002 28.1 7.8 108 14-128 13-129 (134)
394 3tnu_A Keratin, type I cytoske 48.1 1.3E+02 0.0045 25.7 12.0 11 317-327 12-22 (131)
395 2a20_A Regulating synaptic mem 47.8 7.2 0.00025 29.8 1.5 36 165-201 7-43 (62)
396 3mq7_A Bone marrow stromal ant 46.7 1.4E+02 0.0048 25.6 12.5 17 424-440 92-108 (121)
397 1c1g_A Tropomyosin; contractIl 46.5 1.6E+02 0.0055 26.3 18.5 15 321-335 5-19 (284)
398 1x62_A C-terminal LIM domain p 46.4 24 0.00082 27.1 4.5 39 163-211 11-49 (79)
399 3efg_A Protein SLYX homolog; x 46.3 64 0.0022 25.6 7.0 17 424-440 42-58 (78)
400 3i00_A HIP-I, huntingtin-inter 46.2 1.4E+02 0.0048 25.6 10.5 61 335-404 20-80 (120)
401 1x8y_A Lamin A/C; structural p 46.1 1.1E+02 0.0036 24.6 8.4 58 338-407 7-65 (86)
402 1wt6_A Myotonin-protein kinase 45.7 1.1E+02 0.0039 24.5 8.2 7 393-399 53-59 (81)
403 1j1d_B Troponin T, TNT; THIN f 45.6 43 0.0015 28.3 6.2 16 421-436 74-89 (106)
404 3jsv_C NF-kappa-B essential mo 45.2 1.3E+02 0.0044 24.8 9.9 60 376-439 21-83 (94)
405 1wg2_A Zinc finger (AN1-like) 45.0 16 0.00054 28.2 3.1 26 217-243 14-41 (64)
406 2ocy_A RAB guanine nucleotide 44.8 1.7E+02 0.0059 26.2 13.8 20 424-443 115-134 (154)
407 3tht_A Alkylated DNA repair pr 44.5 63 0.0022 32.5 8.4 82 65-152 18-103 (345)
408 1x4w_A Hypothetical protein FL 43.4 13 0.00044 29.0 2.4 26 217-243 14-44 (67)
409 3s84_A Apolipoprotein A-IV; fo 43.3 2.4E+02 0.0081 27.3 18.7 24 321-344 50-73 (273)
410 3r2p_A Apolipoprotein A-I; amp 43.1 1.3E+02 0.0043 27.2 9.6 18 392-409 104-121 (185)
411 3ihp_A Ubiquitin carboxyl-term 43.1 5.6 0.00019 45.0 0.4 33 227-263 59-91 (854)
412 2fxo_A Myosin heavy chain, car 42.8 1.6E+02 0.0054 25.2 16.7 50 392-441 69-121 (129)
413 3lay_A Zinc resistance-associa 42.6 1.4E+02 0.0048 27.2 9.6 27 420-448 116-142 (175)
414 1fxk_A Prefoldin; archaeal pro 42.5 1.3E+02 0.0045 24.2 13.2 17 423-439 85-101 (107)
415 1l8d_A DNA double-strand break 42.4 1.4E+02 0.0048 24.4 11.1 16 423-438 91-106 (112)
416 2eqb_B RAB guanine nucleotide 42.4 1.5E+02 0.005 24.6 9.6 15 422-436 81-95 (97)
417 2cs3_A Protein C14ORF4, MY039 42.1 14 0.00049 29.9 2.5 35 164-200 12-48 (93)
418 1lwu_C Fibrinogen gamma chain; 42.0 59 0.002 32.6 7.6 17 424-440 40-56 (323)
419 3qh9_A Liprin-beta-2; coiled-c 41.5 1.4E+02 0.0047 24.0 9.9 17 417-433 61-77 (81)
420 1gk4_A Vimentin; intermediate 41.4 1.3E+02 0.0045 23.8 9.8 58 338-407 5-63 (84)
421 3trt_A Vimentin; cytoskeleton, 41.0 1.2E+02 0.0041 23.3 11.3 21 335-355 7-27 (77)
422 1wfh_A Zinc finger (AN1-like) 40.9 20 0.00068 27.7 3.1 26 217-243 14-41 (64)
423 3lqh_A Histone-lysine N-methyl 40.8 13 0.00045 34.3 2.4 31 169-199 4-37 (183)
424 1wlq_A Geminin; coiled-coil; 2 40.3 1.4E+02 0.005 24.0 9.8 28 372-399 39-66 (83)
425 1gk4_A Vimentin; intermediate 40.2 1.3E+02 0.0044 23.9 8.0 17 402-418 29-45 (84)
426 3m91_A Proteasome-associated A 40.1 89 0.003 22.9 6.3 39 394-436 11-49 (51)
427 3q8t_A Beclin-1; autophagy, AT 40.0 1.5E+02 0.0052 24.2 11.9 13 425-437 68-80 (96)
428 4fm3_A Uncharacterized hypothe 39.7 1.3E+02 0.0046 24.9 8.2 62 373-434 31-95 (98)
429 1xke_A RAN-binding protein 2; 39.5 57 0.002 28.1 6.2 101 22-129 8-116 (130)
430 4e61_A Protein BIM1; EB1-like 39.5 1.7E+02 0.0059 24.6 11.3 42 372-413 12-53 (106)
431 2yt5_A Metal-response element- 39.0 18 0.00063 27.1 2.6 35 165-199 4-39 (66)
432 3zcc_A HAMP, osmolarity sensor 39.0 1.3E+02 0.0044 23.0 8.7 20 420-439 94-113 (114)
433 1m1j_A Fibrinogen alpha subuni 38.2 2.9E+02 0.0099 29.0 12.1 107 336-446 53-161 (491)
434 2z5i_A TM, general control pro 38.2 83 0.0029 23.0 6.0 31 369-399 10-40 (52)
435 3etw_A Adhesin A; antiparallel 37.9 1.9E+02 0.0066 24.8 12.6 25 407-431 72-96 (119)
436 3qne_A Seryl-tRNA synthetase, 37.8 1.5E+02 0.0052 31.3 10.3 22 420-441 81-102 (485)
437 1wfp_A Zinc finger (AN1-like) 37.2 24 0.00083 28.0 3.1 25 218-243 25-51 (74)
438 3cve_A Homer protein homolog 1 37.2 1.5E+02 0.0051 23.3 10.9 12 424-435 56-67 (72)
439 3i00_A HIP-I, huntingtin-inter 37.2 2E+02 0.0067 24.6 10.3 36 401-436 42-80 (120)
440 2p2u_A HOST-nuclease inhibitor 37.1 1.7E+02 0.0057 26.4 9.3 52 405-460 40-93 (171)
441 1mm2_A MI2-beta; PHD, zinc fin 37.1 37 0.0013 25.3 4.1 31 166-200 8-38 (61)
442 2wt7_A Proto-oncogene protein 37.0 1.3E+02 0.0045 22.5 9.3 62 377-442 1-62 (63)
443 4emc_A Monopolin complex subun 36.9 1.7E+02 0.0058 27.1 9.1 34 375-408 24-57 (190)
444 1we9_A PHD finger family prote 36.6 22 0.00076 26.5 2.8 32 165-199 4-38 (64)
445 2dj7_A Actin-binding LIM prote 36.3 35 0.0012 26.5 4.0 45 158-211 6-50 (80)
446 1vmg_A Hypothetical protein SS 36.0 1.5E+02 0.005 24.2 7.9 17 426-442 60-76 (95)
447 2e6r_A Jumonji/ARID domain-con 35.8 23 0.00077 28.9 2.9 37 162-199 11-47 (92)
448 2dq3_A Seryl-tRNA synthetase; 35.7 43 0.0015 34.6 5.7 21 420-440 85-105 (425)
449 2aze_B Transcription factor E2 35.5 93 0.0032 26.0 6.7 68 395-469 2-76 (106)
450 1t6f_A Geminin; coiled-coil, c 35.3 50 0.0017 22.5 3.9 19 419-437 16-34 (37)
451 1tu3_F RAB GTPase binding effe 35.2 51 0.0017 26.2 4.6 13 371-383 19-31 (79)
452 3qh9_A Liprin-beta-2; coiled-c 34.9 1.1E+02 0.0038 24.6 6.6 38 396-433 23-63 (81)
453 1lwu_C Fibrinogen gamma chain; 34.9 94 0.0032 31.1 7.8 15 371-385 5-19 (323)
454 3ljm_A Coil Ser L9C; de novo d 34.5 70 0.0024 20.5 4.3 18 370-387 7-24 (31)
455 2dq0_A Seryl-tRNA synthetase; 34.5 1.8E+02 0.0063 30.2 10.3 56 385-440 38-99 (455)
456 2w6a_A ARF GTPase-activating p 34.5 1.4E+02 0.0047 22.7 6.6 26 373-398 36-61 (63)
457 2oxj_A Hybrid alpha/beta pepti 34.4 57 0.0019 22.0 4.0 16 373-388 3-18 (34)
458 3v43_A Histone acetyltransfera 34.2 29 0.00098 29.1 3.3 31 169-199 63-93 (112)
459 2ro1_A Transcription intermedi 34.2 22 0.00075 32.7 2.8 40 168-211 3-48 (189)
460 3swk_A Vimentin; cytoskeleton, 33.8 1.8E+02 0.0062 23.2 9.7 10 427-436 66-75 (86)
461 2p22_A Suppressor protein STP2 33.6 1.6E+02 0.0055 26.9 8.5 71 370-442 11-81 (174)
462 1iml_A CRIP, cysteine rich int 33.4 11 0.00037 28.8 0.5 36 168-212 1-36 (76)
463 1x8y_A Lamin A/C; structural p 33.4 64 0.0022 25.9 5.2 18 400-417 29-46 (86)
464 2ffw_A Midline-1; B-BOX, ring 33.3 15 0.00053 28.9 1.4 39 218-260 30-75 (78)
465 1f62_A Transcription factor WS 33.3 28 0.00096 24.7 2.7 30 169-199 2-31 (51)
466 1k5d_B RAN-specific GTPase-act 33.0 1.1E+02 0.0037 28.6 7.4 100 22-128 46-156 (201)
467 4hat_B RAN-specific GTPase-act 33.0 1.3E+02 0.0044 26.3 7.5 102 21-128 22-131 (140)
468 2lem_A Apolipoprotein A-I; lip 32.8 3E+02 0.01 25.4 15.8 108 320-431 59-182 (216)
469 1j1d_C Troponin I, TNI; THIN f 32.7 2.5E+02 0.0086 24.5 11.4 35 403-437 69-106 (133)
470 3kg0_A Snoab; polyketide, anth 32.4 1.2E+02 0.0041 25.7 7.2 58 66-125 25-88 (128)
471 2csz_A Synaptotagmin-like prot 32.2 19 0.00065 28.7 1.7 18 221-238 53-72 (76)
472 2spc_A Spectrin; cytoskeleton; 32.1 1.9E+02 0.0065 22.9 8.8 33 368-400 40-72 (107)
473 1yuz_A Nigerythrin; rubrythrin 31.8 13 0.00044 34.8 0.8 9 230-238 186-194 (202)
474 2xb1_A Pygopus homolog 2, B-ce 31.7 12 0.00041 31.3 0.5 33 167-199 3-36 (105)
475 2l43_A N-teminal domain from h 30.9 23 0.00078 28.7 2.1 37 163-199 21-58 (88)
476 2oie_A RS21-C6; helix, hydrola 30.9 17 0.00059 30.1 1.4 18 425-442 73-90 (111)
477 3f6n_A Virion-associated prote 30.8 1.6E+02 0.0054 25.5 7.3 38 425-468 49-86 (129)
478 2co8_A NEDD9 interacting prote 30.6 59 0.002 25.1 4.5 42 161-211 9-50 (82)
479 3a2a_A Voltage-gated hydrogen 30.1 1.3E+02 0.0044 22.5 5.8 38 388-436 14-51 (58)
480 1fp0_A KAP-1 corepressor; PHD 30.0 55 0.0019 26.7 4.2 44 164-211 22-71 (88)
481 1x64_A Alpha-actinin-2 associa 29.9 54 0.0018 25.6 4.2 39 163-211 21-59 (89)
482 1zxa_A CGMP-dependent protein 29.9 71 0.0024 24.8 4.6 16 419-434 34-49 (67)
483 1wig_A KIAA1808 protein; LIM d 29.9 50 0.0017 25.0 3.8 54 168-236 6-59 (73)
484 1wle_A Seryl-tRNA synthetase; 29.8 2.9E+02 0.0098 29.2 10.9 72 371-442 70-148 (501)
485 2yql_A PHD finger protein 21A; 29.8 31 0.0011 25.2 2.5 48 160-211 2-55 (56)
486 1m1j_C Fibrinogen gamma chain; 29.7 4.2E+02 0.015 27.2 11.9 99 320-419 32-132 (409)
487 3mov_A Lamin-B1; LMNB1, B-type 29.5 59 0.002 26.8 4.4 49 395-443 15-63 (95)
488 3mtu_A Tropomyosin alpha-1 cha 29.4 97 0.0033 24.3 5.5 33 322-354 9-43 (75)
489 1nfn_A Apolipoprotein E3; lipi 29.4 76 0.0026 29.1 5.7 112 320-434 78-189 (191)
490 3ghg_C Fibrinogen gamma chain; 29.2 4.4E+02 0.015 27.2 11.8 71 366-436 33-117 (411)
491 1wff_A Riken cDNA 2810002D23 p 29.2 32 0.0011 28.0 2.6 32 217-249 24-60 (85)
492 3m91_A Proteasome-associated A 29.1 1.7E+02 0.0058 21.4 7.2 42 377-418 8-49 (51)
493 2ke4_A CDC42-interacting prote 29.0 2.4E+02 0.0083 23.2 9.1 67 370-436 14-88 (98)
494 4etp_A Kinesin-like protein KA 28.9 1.3E+02 0.0044 30.8 7.9 54 378-431 3-56 (403)
495 4fi5_A Nucleoprotein; structur 28.9 2.5E+02 0.0084 23.9 8.1 61 373-436 24-88 (113)
496 1x79_B RAB GTPase binding effe 28.7 2.7E+02 0.0092 23.6 9.2 58 388-445 9-66 (112)
497 3mov_A Lamin-B1; LMNB1, B-type 28.5 1.6E+02 0.0054 24.1 6.9 69 370-442 11-79 (95)
498 3hhm_B NISH2 P85alpha; PI3KCA, 28.5 4.7E+02 0.016 26.4 12.9 99 330-432 168-266 (373)
499 3lay_A Zinc resistance-associa 28.4 2E+02 0.007 26.1 8.3 74 340-418 70-143 (175)
500 2zet_C Melanophilin; complex, 28.4 14 0.00049 33.1 0.4 40 190-236 67-114 (153)
No 1
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-22 Score=177.70 Aligned_cols=108 Identities=28% Similarity=0.520 Sum_probs=90.2
Q ss_pred eeecCCCccccccccccC-------CccccccccccccCCCCccCCCCCCCceeeccccccccccCC-CCCccccccCC-
Q 011525 185 LSTICDHSFQCSCTAKWT-------VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY-KEGHAVRHWKD- 255 (484)
Q Consensus 185 vt~~C~H~Fh~~Cl~~w~-------~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~-~~~HA~~H~~~- 255 (484)
+...|.|.++..++..|. ...|+.|+... ......+.+|....+||+||+||++||||+ .++||..||++
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~-~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~ 81 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDN-KVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTP 81 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCT-TSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCccccccc-cccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCc
Confidence 567899999988887663 35799998754 233345678999999999999999999998 68999999999
Q ss_pred --CCCceeeeCCCceeEeeccchhhhhhhhccccCceeecc
Q 011525 256 --TQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMN 294 (484)
Q Consensus 256 --t~H~~~l~l~t~~Vwcy~cd~~Vhrl~q~k~dgklve~~ 294 (484)
++|+++++++|++||||.||+||+ ..+++.++++|++.
T Consensus 82 ~~t~H~l~~~l~t~~vwCY~cd~~V~-~~~~~~l~~~v~~~ 121 (126)
T 2i50_A 82 RSEPHCLVLSLDNWSVWCYVCDNEVQ-YCSSNQLGQVVDYV 121 (126)
T ss_dssp CSSCCCEEEETTTCCEEETTTTEEEC-CCTTSHHHHHHHHH
T ss_pred CCCCCcEEEECCCCeEEeCCCCcEEE-cCcchhHHHHHHHH
Confidence 899999999999999999999998 56778888888764
No 2
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.81 E-value=1.9e-21 Score=173.26 Aligned_cols=84 Identities=30% Similarity=0.486 Sum_probs=68.3
Q ss_pred ccccccCCccccccccccc----------cCCCCccCCCCCCCceeeccccccccccCCC------CCccccccCCCCCc
Q 011525 196 SCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHW 259 (484)
Q Consensus 196 ~Cl~~w~~~~CPvCR~~~~----------~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~~------~~HA~~H~~~t~H~ 259 (484)
.|+.+|.+..||+|++... ++..+.|.+|+...+||+||+||++|||||. ++||..||++++|+
T Consensus 2 ~~~~~W~~e~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~ 81 (129)
T 2g45_A 2 QEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP 81 (129)
T ss_dssp ---------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred hHHHhhcCCCCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence 5889999889999998742 2345789999999999999999999999997 89999999999999
Q ss_pred eeeeCCC-----ceeEeeccchhhh
Q 011525 260 YSLDLRT-----QQIWDYVGDNYVH 279 (484)
Q Consensus 260 ~~l~l~t-----~~Vwcy~cd~~Vh 279 (484)
++++|.| ++||||.||+||+
T Consensus 82 l~v~l~t~~~~~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 82 LAVKLGTITPDGADVYSYDEDDMVL 106 (129)
T ss_dssp EEEETTCCBTTBCCEEETTTTEEEE
T ss_pred EEEECCCCCCCCCeEEECCCCCEeE
Confidence 9999999 7999999999995
No 3
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.75 E-value=1.6e-19 Score=156.46 Aligned_cols=63 Identities=38% Similarity=0.809 Sum_probs=60.8
Q ss_pred CCccCCCCCCCceeeccccccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhhhh
Q 011525 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (484)
Q Consensus 218 ~~~C~~C~~~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~Vhr 280 (484)
...|.+|+...++|+||+||++||||+.++||..||++++|+++++++|.+||||.||.||++
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCC
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEec
Confidence 467999999999999999999999999999999999999999999999999999999999975
No 4
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.70 E-value=2.3e-18 Score=146.37 Aligned_cols=62 Identities=35% Similarity=0.816 Sum_probs=59.1
Q ss_pred CCCccCCCC-CCCceeeccc--cccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhh
Q 011525 217 ERPTCSVCG-TVENLWVCLI--CGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278 (484)
Q Consensus 217 ~~~~C~~C~-~~~nlWiCL~--CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~V 278 (484)
....|.+|+ ..+|+|+||+ ||++||||+.++||..||++++|+++++++|.+||||.||.||
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 467899999 6779999999 9999999999999999999999999999999999999999997
No 5
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.3e-18 Score=195.03 Aligned_cols=110 Identities=29% Similarity=0.475 Sum_probs=81.5
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccCCccccccccccc----------cCCCCccCCCCCCCceeecc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCL 234 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~----------~~~~~~C~~C~~~~nlWiCL 234 (484)
.++|. .|++++...+.||+. +.+.++..|+.+|....||+|++... ++..+.|.+|+...++|+||
T Consensus 156 ~~~~~--~~~~~~~~~~~~i~~--~~~~~~~~~~~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL 231 (854)
T 3ihp_A 156 GGLPD--IVRDRVTSAVEALLS--ADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNL 231 (854)
T ss_dssp TTSCH--HHHHHHHHHHHHHTC------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEET
T ss_pred ccCCh--hhHHHHHHHHHHHHh--cCCHHHHHHHHhhcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEe
Confidence 34444 389999887777776 56889999999999888999998731 13457899999999999999
Q ss_pred ccccccccCCC------CCccccccCCCCCceeeeCCC-----ceeEeeccchhh
Q 011525 235 ICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 278 (484)
Q Consensus 235 ~CG~vGCgr~~------~~HA~~H~~~t~H~~~l~l~t-----~~Vwcy~cd~~V 278 (484)
+||++||||+. ++||..||.+++|++++++.| ++||||.||.||
T Consensus 232 ~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v 286 (854)
T 3ihp_A 232 TDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMV 286 (854)
T ss_dssp TTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEC
T ss_pred cCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCee
Confidence 99999999986 789999999999999999999 999999999999
No 6
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.67 E-value=4.7e-18 Score=145.23 Aligned_cols=65 Identities=28% Similarity=0.490 Sum_probs=57.5
Q ss_pred CCCCccCCCCCCC----ceeeccccccccccCC-CCCccccccCCCCCceeeeC--CCceeEeeccchhhhh
Q 011525 216 DERPTCSVCGTVE----NLWVCLICGFVGCGRY-KEGHAVRHWKDTQHWYSLDL--RTQQIWDYVGDNYVHR 280 (484)
Q Consensus 216 ~~~~~C~~C~~~~----nlWiCL~CG~vGCgr~-~~~HA~~H~~~t~H~~~l~l--~t~~Vwcy~cd~~Vhr 280 (484)
++.+.|..|+..+ |||+||+||+|||||+ .++||..||++|+|++++.+ ++.+||||+||+||+.
T Consensus 16 p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~ 87 (102)
T 2ida_A 16 PSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDL 87 (102)
T ss_dssp CSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEEC
T ss_pred CCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcEEEC
Confidence 4567899999887 8999999999999999 89999999999999966554 5789999999999954
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.18 E-value=2.6e-12 Score=135.62 Aligned_cols=60 Identities=23% Similarity=0.664 Sum_probs=56.3
Q ss_pred CCccCCCCCC--CceeeccccccccccCCCCCccccccCCCCCceeeeCCCceeEeeccchhhh
Q 011525 218 RPTCSVCGTV--ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279 (484)
Q Consensus 218 ~~~C~~C~~~--~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~l~t~~Vwcy~cd~~Vh 279 (484)
.+.|..|... .++|+||+||++|||+ ++||..|+.+++|++++++++++||||.||.||.
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~ 109 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIG 109 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEEC
T ss_pred CCCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcc
Confidence 3569999988 7999999999999997 8999999999999999999999999999999994
No 8
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.76 E-value=1.2e-09 Score=95.04 Aligned_cols=78 Identities=28% Similarity=0.557 Sum_probs=57.0
Q ss_pred CCCCcCccccCCcCCC---CCCceeecCCCccccccccccC--Ccccccccccccc---------CCCCccCCCCCCCc-
Q 011525 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQQ---------DERPTCSVCGTVEN- 229 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~---~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~~~---------~~~~~C~~C~~~~n- 229 (484)
.+..+||||++.+.++ ...+++++|||+||..|+..|. ...||+||..... ++...|..|...-.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 3567999999999875 2344788999999999999993 6789999986532 24466777765422
Q ss_pred ------eeecccccccccc
Q 011525 230 ------LWVCLICGFVGCG 242 (484)
Q Consensus 230 ------lWiCL~CG~vGCg 242 (484)
..+.+.|||+.|.
T Consensus 85 ~~~~~~~~~~~~CgH~fc~ 103 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCS 103 (133)
T ss_dssp HHHTTCCEEEETTSBEEEH
T ss_pred ccccCcceEeCCCCChhhH
Confidence 2366677777664
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.69 E-value=9.3e-09 Score=76.66 Aligned_cols=48 Identities=25% Similarity=0.711 Sum_probs=39.0
Q ss_pred CCCCCcCccccCCcCCCCCCceeec-CCCccccccccccC--Cccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--VLSCQVCRFC 212 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~-C~H~Fh~~Cl~~w~--~~~CPvCR~~ 212 (484)
+.+...|+||++.+... ..+..++ |+|.||..|+..|. ...||+||..
T Consensus 2 ~~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 2 MDDGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CCCCCcCccCCccccCC-CceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 35678999999999875 3345565 99999999999995 6789999974
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.66 E-value=8.4e-09 Score=82.38 Aligned_cols=50 Identities=38% Similarity=0.634 Sum_probs=42.0
Q ss_pred CCCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---------Ccccccccccc
Q 011525 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---------VLSCQVCRFCH 213 (484)
Q Consensus 160 ~~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---------~~~CPvCR~~~ 213 (484)
....+.+..+||||++.+.++ ++++|||+||..|+..|. ...||+||...
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred hHhhcccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 344567889999999999988 668999999999999884 34799999865
No 11
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.2e-08 Score=76.68 Aligned_cols=45 Identities=29% Similarity=0.776 Sum_probs=38.4
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCcccccccccc-----CCcccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW-----TVLSCQVC 209 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w-----~~~~CPvC 209 (484)
...+.+...||||++.+..+ +.++|+|.||..|+..| ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567788999999999988 66899999999999999 24689988
No 12
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.65 E-value=1.5e-08 Score=81.10 Aligned_cols=52 Identities=29% Similarity=0.581 Sum_probs=42.4
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.....+...|+||++.|..+. .+..++|+|.||..|+..|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred cccCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 345567889999999998763 44567999999999999994 57899999865
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.65 E-value=1.4e-08 Score=80.94 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=41.8
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeec-CCCccccccccccC--C--cccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--V--LSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~-C~H~Fh~~Cl~~w~--~--~~CPvCR~~~ 213 (484)
...+.+...||||++.|.++ ++++ |+|+||..|+..|. . ..||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 44567788999999999998 7788 99999999999985 2 5899999853
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.64 E-value=1.1e-08 Score=76.23 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=39.9
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC--Cccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~ 212 (484)
....|+||++.+......++.++|+|.||..|+..|. ...||+||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCc
Confidence 5678999999997654556788999999999999994 5789999974
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.3e-08 Score=80.37 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=42.3
Q ss_pred CCCCCCCCCcCccccCCcCCCCCCceee-cCCCccccccccccC--Ccccccccccc
Q 011525 160 PPAGFTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 160 ~~~~l~e~ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
....+.+...||||++.+.++ +++ +|+|.||..|+..|. ...||+||...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDA----TTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSC----EECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCc----CEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 344567888999999999987 555 999999999999995 67899999865
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=80.11 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=40.5
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
...+...|+||++.+..+ +.++|+|.||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 345778999999999887 778999999999999985 57899999864
No 17
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1e-08 Score=81.62 Aligned_cols=49 Identities=24% Similarity=0.666 Sum_probs=41.2
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+...|+||++.+..+ ..+..++|+|.||..|+..|. ...||+||...
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 45678999999999876 355678999999999999994 67899999854
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=83.83 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=41.8
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeec-CCCccccccccccC----Ccccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT----VLSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~-C~H~Fh~~Cl~~w~----~~~CPvCR~~~ 213 (484)
...+.+..+||||++.|.+| ++++ |||+||..|+..|. ...||+||...
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34567889999999999998 7888 99999999999873 36899999853
No 19
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.8e-08 Score=79.74 Aligned_cols=51 Identities=25% Similarity=0.644 Sum_probs=41.7
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+.+...|+||++.+..+ ..+..++|+|.||..|+..|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPR-DELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSS-SCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred ccCCCCCCCcCCCcccCCC-CcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 3456778999999999876 334566999999999999994 56899999865
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.59 E-value=1e-08 Score=91.36 Aligned_cols=44 Identities=30% Similarity=0.662 Sum_probs=38.6
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+..+||||++.+.+| ++++|||+||..|+..|. ...||+||...
T Consensus 52 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred ccCCCcccCcccCCc----eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 456899999999988 788999999999999985 57899999753
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1e-08 Score=79.47 Aligned_cols=54 Identities=26% Similarity=0.463 Sum_probs=43.2
Q ss_pred CCCCCCCCCcCccccCCcCCCC---CCceeecCCCccccccccccC--Ccccccccccc
Q 011525 160 PPAGFTELPTCPICLERLDPDT---SGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 160 ~~~~l~e~ptCpICLe~l~~~~---~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
....+.+...|+||++.+..+. ..++.++|+|.||..|+..|. ...||+||...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 3445678899999999997652 234678999999999999994 67899999753
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2e-08 Score=78.99 Aligned_cols=48 Identities=27% Similarity=0.678 Sum_probs=41.0
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC-----Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-----~~~CPvCR~~~ 213 (484)
..+.+...||||++.+..+ +.++|+|.||..|+..|. ...||+||...
T Consensus 15 ~~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HhCccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 3567788999999999987 677999999999999985 34899999854
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.8e-08 Score=76.32 Aligned_cols=44 Identities=30% Similarity=0.750 Sum_probs=37.9
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC-----Ccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVC 209 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-----~~~CPvC 209 (484)
..+.+...||||++.+.++ ++++|+|.||..|+..|. ...||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567888999999999988 778999999999999984 3479988
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.57 E-value=1.5e-08 Score=80.94 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=40.9
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+.+...||||++.|.+| ++++|||+||..|+..|. ...||+||...
T Consensus 4 ~~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp CCSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 456788999999999998 778999999999999984 56899999854
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1.3e-08 Score=78.72 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=39.9
Q ss_pred CCCcCccccC-CcCCCCCCceeecCCCcccccccccc---CCcccccccccc
Q 011525 166 ELPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe-~l~~~~~givt~~C~H~Fh~~Cl~~w---~~~~CPvCR~~~ 213 (484)
+..+||||++ .+..+..-.+.++|||+||..|+.+| ....||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 4678999999 88887555567899999999999998 246799999865
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.2e-08 Score=80.77 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=41.1
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
....+...||||++.+..+ ++++|+|.||..|+..|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred ccCCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 3456678999999999887 678999999999999994 57899999854
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.56 E-value=3.4e-08 Score=79.36 Aligned_cols=50 Identities=38% Similarity=0.593 Sum_probs=42.1
Q ss_pred CCCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--------Ccccccccccc
Q 011525 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCH 213 (484)
Q Consensus 160 ~~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--------~~~CPvCR~~~ 213 (484)
....+.+...||||++.+..+ +.++|+|.||..|+..|. ...||+||...
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred HHHhCccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 344567889999999999988 678999999999999872 45799999854
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=2.6e-08 Score=77.79 Aligned_cols=50 Identities=26% Similarity=0.589 Sum_probs=40.8
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
...+...|+||++.+... ..++.++|+|.||..|+..|. ...||+||...
T Consensus 10 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp STTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred cCCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 345677999999998754 345778999999999999994 67899999854
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=4.7e-08 Score=73.90 Aligned_cols=45 Identities=16% Similarity=0.360 Sum_probs=38.8
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccCCccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ 214 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~ 214 (484)
.+..+|+||++.+..+ ++++|+|+||..|+..| ...||+||....
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~-~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS-GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS-SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC-CCCCCcCCcEee
Confidence 4678899999999988 78899999999999886 458999998653
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=3.1e-08 Score=80.54 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=43.2
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC-----Ccccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~-----~~~CPvCR~~~ 213 (484)
...+.+...||||++.+.......+.++|+|.||..|+..|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 445678899999999999843324778999999999999994 26899999865
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.1e-08 Score=78.35 Aligned_cols=49 Identities=43% Similarity=0.692 Sum_probs=41.6
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--------Ccccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--------~~~CPvCR~~~ 213 (484)
...+.+...||||++.+..+ +.++|+|.||..|+..|. ...||+||...
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred HHHccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 34567889999999999988 677999999999999882 46899999865
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.8e-08 Score=77.06 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=40.7
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
..+.+...||||++.+..+ +.++|||.||..|+..|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CSCCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred hcCCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 3456788999999999988 567999999999999984 46899999854
No 33
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.1e-08 Score=80.53 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=36.7
Q ss_pred CCCCcCccccCCcCCC----------CC-CceeecCCCccccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPD----------TS-GILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~----------~~-givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+..+|+||++.|+++ .. .++.++|+|.||..|+.+|. ..+||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 3567788888888652 12 23444699999999999995 67899999754
No 34
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.51 E-value=1.9e-08 Score=83.38 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=40.7
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+...|+||++.+... ..+..++|+|.||..|+..|. ...||+||...
T Consensus 37 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 45678999999999864 345678999999999999994 67899999854
No 35
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.50 E-value=2.3e-08 Score=85.65 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=37.7
Q ss_pred CCcCccccCCcCCCC--------------CCceeecCCCccccccccccC-------Ccccccccccc
Q 011525 167 LPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT-------VLSCQVCRFCH 213 (484)
Q Consensus 167 ~ptCpICLe~l~~~~--------------~givt~~C~H~Fh~~Cl~~w~-------~~~CPvCR~~~ 213 (484)
...||||++.|..+. ..+..++|+|.||..||..|. ...||+||...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 458999999997653 122367999999999999995 45899999865
No 36
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=5.3e-08 Score=84.24 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=40.8
Q ss_pred CCCCCcCccccCCcCCCCCCceee-cCCCccccccccccCCcccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
+.+..+||||++.+..| +++ +|||+||..|+..|....||+||...
T Consensus 19 l~~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp HHHTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred chhCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 45788999999999998 666 99999999999999778899999864
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.48 E-value=7e-08 Score=78.34 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=38.9
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccc-cC--Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT--VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~-w~--~~~CPvCR~~~ 213 (484)
..+.+..+||||++.++.+...+..++|||+||..|+.. |. ...||+||...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456788999999998853322223345999999999996 42 57899999865
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.48 E-value=3.3e-08 Score=85.01 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=40.5
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+.+..+||||++.+..| ++++|||+||..|+..|. ...||+||...
T Consensus 11 ~~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 345678999999999988 788999999999999985 45899999854
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.48 E-value=2.1e-08 Score=78.40 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=40.8
Q ss_pred CCCCCcCccccCCcCCCC---CCceeecCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDT---SGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~---~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
..+...||||++.+..+. ..++.++|+|.||..|+..|. ...||+||...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 356789999999997652 234678999999999999994 67999999865
No 40
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4.2e-08 Score=76.75 Aligned_cols=48 Identities=31% Similarity=0.701 Sum_probs=40.7
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
...+.+...|+||++.+.. +.++|+|.||..|+..|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred hhcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 3456678899999999875 678999999999999995 57899999854
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.46 E-value=3.4e-08 Score=86.11 Aligned_cols=45 Identities=29% Similarity=0.594 Sum_probs=39.2
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+..+||||++.+..| ++++|||+||..|+..|. ...||+||...
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 4567999999999988 788999999999999883 44899999865
No 42
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.46 E-value=2.1e-08 Score=84.60 Aligned_cols=46 Identities=28% Similarity=0.594 Sum_probs=40.1
Q ss_pred CCCCCcCccccCCcCCCCCCcee-ecCCCccccccccccC--C-cccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKWT--V-LSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt-~~C~H~Fh~~Cl~~w~--~-~~CPvCR~~~ 213 (484)
+.+..+||||++.+..| ++ ++|||.||..|+..|. . ..||+||...
T Consensus 19 l~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 45788999999999988 66 8999999999999984 3 6899999865
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.43 E-value=5.5e-08 Score=75.55 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=38.2
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+...||||++.+..+ .+.++|+|.||..|+..|. ...||+||...
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 456899999999865 3678999999999999994 67899999754
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.40 E-value=4.1e-08 Score=83.59 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=39.6
Q ss_pred CCCCCcCccccCCcCCCCCCceee-cCCCccccccccccC--Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+.+..+||||++.+.++ +++ +|||+||..|+..|. ...||+||...
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA----TTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp HGGGTBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCcCCCccCChHHhCc----CEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 45788999999999988 666 999999999999984 57899999754
No 45
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.38 E-value=6e-08 Score=74.01 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=39.2
Q ss_pred CCCcCccccCCcCCCC---CCceeecCCCccccccccccC--Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDT---SGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~---~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+...||||++.+..+. ..++.++|+|.||..|+..|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 4678999999997641 334678999999999999995 67899999854
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.38 E-value=4.4e-08 Score=81.99 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=38.6
Q ss_pred CCCCcCccccCCcCCCCCCceee-cCCCccccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+...||||++.+.++ +++ +|||+||..|+..|. ...||+||...
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA----MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccCChhhCCc----CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 4678999999999987 555 899999999999984 56899999854
No 47
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.33 E-value=1.6e-07 Score=80.70 Aligned_cols=47 Identities=19% Similarity=0.523 Sum_probs=38.7
Q ss_pred CCCcCccccCCcCCCCC--------------CceeecCCCccccccccccC--Cccccccccc
Q 011525 166 ELPTCPICLERLDPDTS--------------GILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~--------------givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~ 212 (484)
+..+|+||++.|+.+.. .++.++|+|.||..|+..|. ..+||+||..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 56789999999886521 25668999999999999994 6789999985
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=1.2e-07 Score=80.50 Aligned_cols=45 Identities=36% Similarity=0.690 Sum_probs=37.9
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccCC-----cccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~-----~~CPvCR~~~ 213 (484)
.+...||||++.+..+ ++++|||.||..|+..|.. ..||+||...
T Consensus 19 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 19 QKILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred cCCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 3567999999999988 6689999999999999842 3799999754
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.31 E-value=1.9e-07 Score=76.66 Aligned_cols=47 Identities=6% Similarity=-0.108 Sum_probs=41.1
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+-+...||||++.|.+| ++++|||+|++.||..|- ...||+|+...
T Consensus 10 ~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCchheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 455788999999999999 888999999999999884 67899998754
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.31 E-value=4.9e-08 Score=84.06 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=40.0
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
+.+...||||++.+.+| ++++|||+||..|+..|. ...||+||...
T Consensus 20 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 20 FVKSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HHHHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred ccCCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 45678999999999988 678999999999999984 56899999865
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.30 E-value=8.1e-08 Score=87.76 Aligned_cols=47 Identities=30% Similarity=0.593 Sum_probs=39.4
Q ss_pred CCCCCCcCccccCCcCCCCCCceee-cCCCccccccccccC---Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+.+...||||++.+.++ +++ +|||.||..|+..|. ...||+||...
T Consensus 50 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNT----MTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp CCHHHHBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred hCCCCCCCcccChHhhCc----CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 455677999999999987 555 999999999999983 56799999753
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.29 E-value=2e-07 Score=79.05 Aligned_cols=47 Identities=6% Similarity=-0.111 Sum_probs=41.0
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+-+...||||++.|.+| ++++|||+||+.||..|- ...||+|+...
T Consensus 25 ~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred cCcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 445678999999999999 888999999999999874 67899999754
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.28 E-value=1.3e-07 Score=85.69 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=39.1
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+..+||||++.+.+| ++++|+|+||..|+..|. ...||+||...
T Consensus 76 ~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ccCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 4567999999999988 778999999999999984 34899999865
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.27 E-value=2.1e-07 Score=74.27 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=38.2
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCc-cccccccccCCcccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
.+...|+||++.+.++ +.++|||. ||..|+..| ..||+||...
T Consensus 22 ~~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 65 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV--DKCPMCYTVI 65 (74)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC--SBCTTTCCBC
T ss_pred ccCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC--ccCCCcCcCc
Confidence 4567999999999887 78899999 999999999 7899999754
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.26 E-value=3.6e-07 Score=77.21 Aligned_cols=47 Identities=11% Similarity=-0.124 Sum_probs=40.9
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCC-CccccccccccC--Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICD-HSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~-H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+-+...||||++.|.+| ++++|| |+|++.||..|- ...||+||...
T Consensus 18 ~~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp SCCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cCcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 445678999999999999 889999 999999999874 67899999754
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.25 E-value=2.1e-07 Score=80.60 Aligned_cols=47 Identities=30% Similarity=0.465 Sum_probs=40.7
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+.+...||||++.+..| ++++|||+||..|+..|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 456778999999999988 778999999999999984 34899999865
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.23 E-value=3.9e-07 Score=88.63 Aligned_cols=47 Identities=11% Similarity=-0.051 Sum_probs=40.0
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
...+...||||++.|.+| ++++|||+||..||..|- ...||+||...
T Consensus 204 ~~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 445678999999999999 889999999999999873 34599999754
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.19 E-value=1.6e-07 Score=84.30 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=40.0
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Cccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 212 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~ 212 (484)
.+.+..+||||++.|.+| ++++|||+||..|+..|. ...||+||..
T Consensus 27 ~l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred cCCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 356778999999999998 778999999999999984 3589999984
No 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.1e-06 Score=69.94 Aligned_cols=48 Identities=25% Similarity=0.620 Sum_probs=38.4
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCC-----CccccccccccC----Ccccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWT----VLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~-----H~Fh~~Cl~~w~----~~~CPvCR~~~ 213 (484)
..+...|+||++.+++.. .+.++|. |.||..||.+|. ...||+||+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CTTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 346779999999887542 3567996 999999999994 35899999865
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.14 E-value=3.4e-07 Score=80.06 Aligned_cols=48 Identities=19% Similarity=0.506 Sum_probs=0.9
Q ss_pred CCCcCccccCCcCCCCC--------------CceeecCCCccccccccccC--Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTS--------------GILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~--------------givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
+..+|+||++.|..+.. .++.++|+|.||..|+..|. ..+||+||...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 45689999999976321 23446999999999999995 67899999753
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=5.4e-07 Score=75.23 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=37.9
Q ss_pred CCCCCCcCccccCCcCCCCCCceeec-CCCccccccccccC--------Cccccc--ccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--------VLSCQV--CRF 211 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~-C~H~Fh~~Cl~~w~--------~~~CPv--CR~ 211 (484)
+..+...||||++.|.+| ++++ |||+|+..||..|- ...||+ |+.
T Consensus 3 ~~~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SCSSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred CCCcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 456778999999999999 7785 99999999999873 148999 874
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.4e-06 Score=68.12 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=36.5
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCc-cccccccccCCcccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
.+...|+||++.+.++ +.++|+|. ||..|+..+ ..||+||...
T Consensus 23 ~~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 66 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV--DKCPMCYTVI 66 (75)
T ss_dssp HHHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHHC--SBCTTTCCBC
T ss_pred CCCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhCC--CCCccCCcee
Confidence 3566899999999887 77899999 999999755 6899999854
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.95 E-value=2.2e-06 Score=80.11 Aligned_cols=48 Identities=10% Similarity=-0.070 Sum_probs=40.5
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
..+-+...||||++.|.+| ++++|||+|+..||..|- +.+||+|+...
T Consensus 101 ~~ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 101 REIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cCCcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 3455778999999999999 888999999999999873 34699999754
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.95 E-value=2.4e-06 Score=88.61 Aligned_cols=43 Identities=28% Similarity=0.578 Sum_probs=37.9
Q ss_pred CCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
...|+||++.+..+ +.++|||.||..|+..|. ...||+||...
T Consensus 332 ~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 46999999999877 789999999999999993 57899999854
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.92 E-value=2.2e-06 Score=78.47 Aligned_cols=47 Identities=30% Similarity=0.465 Sum_probs=40.8
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC---Ccccccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~ 213 (484)
.+.+...||||++.|.+| ++++|||+||..|+..|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 466788999999999998 778999999999999984 34899999754
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.83 E-value=2.4e-06 Score=73.91 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=39.6
Q ss_pred CCCCcCccccCCcCCC---CCCceeecCCCccccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~---~~givt~~C~H~Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+...|+||++.+..+ ...++.++|+|.||..|+..|. ..+||+||...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 4567899999998764 1223678999999999999994 67999999854
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.83 E-value=6e-06 Score=66.84 Aligned_cols=43 Identities=33% Similarity=0.522 Sum_probs=37.0
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCc-cccccccccCCcccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
.+...|+||++.+.++ +.++|||. ||..|+..|. .||+||...
T Consensus 16 ~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i 59 (79)
T 2yho_A 16 KEAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQLQ--SCPVCRSRV 59 (79)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTCS--BCTTTCCBC
T ss_pred CCCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhcC--cCCCCCchh
Confidence 3566899999998876 78899999 9999999874 899999854
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.82 E-value=6.9e-06 Score=84.15 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=38.5
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCc-cccccccccCCcccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
.+...|+||++.+..+ +.++|||. ||..|+..| ..||+||...
T Consensus 293 ~~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~--~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL--RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC--SBCTTTCCBC
T ss_pred cCCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC--CcCCCCCCCc
Confidence 4678999999999887 78899999 999999999 6899999754
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.80 E-value=5.4e-06 Score=81.64 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=39.7
Q ss_pred CCCCCCCcCccccCCcCCCCCCcee-ecCCCcccccccccc-C---Cccccc--ccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKW-T---VLSCQV--CRFCH 213 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt-~~C~H~Fh~~Cl~~w-~---~~~CPv--CR~~~ 213 (484)
.+.....+||||++.|.+| ++ +.|||+||+.||..| . ...||+ |+...
T Consensus 176 ~~~~~el~CPIcl~~f~DP----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAP----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSE----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred cCCceeeECcCccCcccCC----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 3567888999999999999 65 599999999999975 3 257999 98743
No 70
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.69 E-value=5.1e-06 Score=64.48 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=36.3
Q ss_pred CCCCcCccccCCcCCCCCCceee--cCCCc-cccccccccC--Ccccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILST--ICDHS-FQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~--~C~H~-Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
.+...|+||++...+. +.+ +|||. ||..|+..|. ...||+||...
T Consensus 6 ~~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCE----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCE----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 3567899999988766 444 99999 7999999874 56899999743
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=3.7e-05 Score=60.46 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCc-cccccccccCCcccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~-Fh~~Cl~~w~~~~CPvCR~~~ 213 (484)
..+...|+||++...++ +.++|+|. ||..|+.. ...||+||...
T Consensus 12 ~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~--~~~CP~CR~~i 56 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY--FQQCPMCRQFV 56 (68)
T ss_dssp CCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH--CSSCTTTCCCC
T ss_pred CCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc--CCCCCCCCcch
Confidence 34578999999998876 88999999 99999874 35899999754
No 72
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.57 E-value=1e-05 Score=62.51 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=35.5
Q ss_pred CCCcCccccCCcCCCCCCceee--cCCCc-cccccccccC--Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILST--ICDHS-FQCSCTAKWT--VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~--~C~H~-Fh~~Cl~~w~--~~~CPvCR~~~ 213 (484)
....|+||++...++ +.+ +|||. ||..|...|. ...||+||...
T Consensus 6 ~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG----NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSCE----EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred cCCCCcccCCcCCCe----EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 356899999988765 444 99998 9999999874 56899999753
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=4.9e-05 Score=61.10 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=36.7
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC----Cccccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~----~~~CPvCR~~ 212 (484)
.....|+||.+.+... +.-..|+|.||..|+.+|. ...||+||..
T Consensus 13 ~~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 3568999999999743 4445899999999999994 2679999975
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.32 E-value=4e-05 Score=63.41 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=34.0
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccc-cC---------Cccccc--cccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---------VLSCQV--CRFC 212 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~-w~---------~~~CPv--CR~~ 212 (484)
.+..+|+||++.+..+.. +...+|+|.||..|+.. |. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQM-TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGE-EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccc-eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356789999999886621 11237999999999985 42 247888 8765
No 75
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.03 E-value=0.00017 Score=73.55 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=34.8
Q ss_pred CCCcCccccCCcCCCCCCc-----eeecCCCccccccccccC----C---------ccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGI-----LSTICDHSFQCSCTAKWT----V---------LSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~gi-----vt~~C~H~Fh~~Cl~~w~----~---------~~CPvCR~~ 212 (484)
....|+||++.+.+. ..+ ....|+|.||..|+.+|- . ..||.||..
T Consensus 307 ~~~ECaICys~~l~~-g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDG-GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTT-CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCC-CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 456899999988762 111 135899999999999994 1 469999974
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.00 E-value=0.00019 Score=55.12 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=34.1
Q ss_pred CCCcCccccCCcCCCCCCceeecCC--C---ccccccccccC----Ccccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICD--H---SFQCSCTAKWT----VLSCQVCRFCH 213 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~--H---~Fh~~Cl~~w~----~~~CPvCR~~~ 213 (484)
+...|.||++..+++ +..||. + .||..|+.+|. ...||+|++..
T Consensus 5 ~~~~CrIC~~~~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCCCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 567899999875544 457765 4 79999999994 57899999754
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0046 Score=49.67 Aligned_cols=70 Identities=7% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
......|.|-++|..+|-.||..|++.+ .|..++|+++..-.++-...+.|.+...|..-.. +||..|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 3467899999999999999999999999 7999999996333347789999999999999999 99988765
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.80 E-value=0.00021 Score=55.08 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=35.8
Q ss_pred CcCccccCCcCCCCCCceee-cCCCccccccccccC--Cccccccccc
Q 011525 168 PTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFC 212 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~~w~--~~~CPvCR~~ 212 (484)
..||||++.|.+| +.+ +|||+|.+.|+.+|- +..||+++..
T Consensus 4 ~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~ 47 (61)
T 2bay_A 4 MLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDPITNEP 47 (61)
T ss_dssp CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCTTTCCB
T ss_pred EEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCC
Confidence 5799999999998 666 899999999999994 5579999864
No 79
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.44 E-value=0.026 Score=46.24 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=60.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+- .|..++|+++..-.++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 3578999999999999999999998774 3899999996432346789999999999999999999998765
No 80
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.39 E-value=0.015 Score=45.95 Aligned_cols=72 Identities=6% Similarity=0.124 Sum_probs=58.8
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+..|.|-++|..+|..||..+++.+- .|.+++|+++. .-.++-...+.|.+...|......+||..|..
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578899999999999999999998764 48999999853 22346688999999999999999999987764
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.023 Score=46.55 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+...++.|.|-.+|..+|-.||..+++.+ ..|..++|+++... ++-...+.|.+...|+.-...+||..|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33467899999999999999999999876 46889999986543 57789999999999999999999998865
No 82
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.28 E-value=0.025 Score=46.41 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 59 QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 59 ~~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+.+......|.|-.+|..+|-.||..|++.+ . |..++|+++.. -.++-...+.|.+...|.... .+||..|..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 3444567899999999999999999999999 5 99999999542 124667899999999999999 899987764
No 83
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.21 E-value=0.001 Score=56.27 Aligned_cols=65 Identities=28% Similarity=0.443 Sum_probs=45.1
Q ss_pred cCccccCCcCCCCCCceeecCCCccccccccccC---CccccccccccccCCCCccCCCCCCCceeeccccccccccCC
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 244 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~---~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~ 244 (484)
-|+.|.-.+..- ...+||.|.||.+|...|. +..||.|+......+ .+ ..+++|+|-+ ..||-|.
T Consensus 3 fC~~C~~Pi~iy---gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe-----~~-~~~~if~C~~--~~~Ckrt 70 (101)
T 3vk6_A 3 FCDKCGLPIKVY---GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE-----QC-TRGSLFMCSI--VQGCKRT 70 (101)
T ss_dssp BCTTTCSBCSEE---EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE-----EE-EGGGCCCCCC--CCCCCCC
T ss_pred ecCccCCCeEEE---eeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE-----Ee-ccCCEEECCC--CCCHHHH
Confidence 477776555532 2368999999999999873 679999998653221 12 2378898743 7889774
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.18 E-value=0.028 Score=44.84 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+ ..|..++|+++.+ .++-...+.|.+...|+.....+||..|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~g-~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKMENG-KSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEESSS-CEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEccCC-CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457899999999999999999999876 4688899998543 356779999999999999999999998865
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.15 E-value=0.037 Score=45.27 Aligned_cols=70 Identities=6% Similarity=0.088 Sum_probs=60.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+- .|..++|+++ .-.++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4578899999999999999999998764 4889999996 33457789999999999999999999998855
No 86
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.034 Score=44.60 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+- .|..++|+++.. ..++-...+.|.+...|......+||..|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 3578999999999999999999998774 589999998532 2246689999999999999999999988865
No 87
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.10 E-value=0.026 Score=45.31 Aligned_cols=72 Identities=8% Similarity=0.064 Sum_probs=61.1
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+..|.|-++|..+|-.||..++..+- .|..++|+++..-.++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34578999999999999999999998874 5888999985433346789999999999999999999988764
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.06 E-value=0.04 Score=45.99 Aligned_cols=73 Identities=7% Similarity=0.184 Sum_probs=61.0
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+...+..|.|-++|..+|-.||..+++.+ ..|..++|+++. .-.++-...+.|.+...|..-...+||..|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33567899999999999999999999876 348999999853 22346688999999999999999999988765
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.04 E-value=0.036 Score=46.35 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 60 NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 60 ~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+...++.|.|-++|..+|-.||..+++.+- .|..++|+++.. ..++-...+.|.+...|......+||..|..
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3345678999999999999999999998774 589999998532 1246679999999999999999999988865
No 90
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.03 E-value=0.03 Score=44.84 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|..||..+++.+- .|..++|+++... .++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578899999999999999999998764 5889999985432 346689999999999999999999988864
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.03 Score=45.61 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=++|..+|-.||..++..+- .|..++|+++..-.++-...+.|.+...|......+||..|+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3567899999999999999999998764 5899999986533346789999999999999999999988865
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.95 E-value=0.019 Score=45.31 Aligned_cols=71 Identities=10% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|..||..++..+ ..|..++|+++.. ..++-...+.|.+...|..-...+||..|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 357899999999999999999998876 4688999998532 2235578999999999999999999987753
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.92 E-value=0.025 Score=46.88 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=60.6
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+...++.|.|-++|..+|-.||..+++.+ ..|..++|+++.. -.++-...+.|.+...|......+||..|+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567899999999999999999999877 4588999988531 1246688999999999999999999988864
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.92 E-value=0.052 Score=44.51 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...++.|.|-++|..+|-.||..+++.+ ..|..++|+++.. ..++-...+.|.+...|..-...+||..|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 3457899999999999999999999877 4688999998532 2346688999999999999999999998864
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.89 E-value=0.048 Score=45.34 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=60.6
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+ ..|.+++|+++..-.++-...+.|.+...|..-...+||..|+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA-GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 357889999999999999999999876 36889999985433346789999999999999999999998864
No 96
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.89 E-value=0.031 Score=47.33 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=61.0
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|=++|..+|-.||..+++.+- .|..++|+++....++-...+.|.+.+.|+.-...+||..|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHG-PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSS-CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568899999999999999999998874 4889999996533356789999999999999999999998865
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.86 E-value=0.042 Score=44.89 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=61.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc-CCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR-FSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~-F~s 134 (484)
..+..|.|-++|..+|-.||..+++.....|.+++|+++..-.++-...+.|.+...|..-...+||.. |+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 356889999999999999999999884456899999996433357789999999999999999999988 765
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.85 E-value=0.071 Score=44.35 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=60.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|..||..++..+- .|..++|+++..-.++-...+.|.+...|......+||..+..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 3568899999999999999999988764 5889999996433356789999999999999999999999864
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.83 E-value=0.042 Score=44.90 Aligned_cols=70 Identities=7% Similarity=0.150 Sum_probs=60.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+- .|..++|+++... ++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcC-CEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 4578999999999999999999987764 5889999996443 56789999999999999999999988764
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.78 E-value=0.072 Score=43.22 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=61.0
Q ss_pred CCCCCCcEEEEeccCCCCChhHHHHhhcccccceeE--------EEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCC
Q 011525 60 NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--------LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGK 130 (484)
Q Consensus 60 ~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~--------~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~ 130 (484)
.+....+.|.|=++|..+|-.||..|++.+- .|.. ++|+++.. -.++-...+.|.+...|..-...+||.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445679999999999999999999998774 4666 89998522 234668999999999999999999999
Q ss_pred cCCC
Q 011525 131 RFSP 134 (484)
Q Consensus 131 ~F~s 134 (484)
.|..
T Consensus 87 ~~~g 90 (99)
T 2la6_A 87 EFSG 90 (99)
T ss_dssp BSSS
T ss_pred EeCC
Confidence 8864
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.04 Score=45.04 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|-.||..+++.+ ..|..++|+++.. -.++-...+.|.+.+.|+.-...+||..|+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457899999999999999999999877 3588999998532 1246678999999999999999999998865
No 102
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.032 Score=44.71 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=59.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|..||..++..+- .|.+++|+++.. -.++-...+.|.+...|......+||..|..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 4578899999999999999999998774 488999998532 1235578899999999999999999988764
No 103
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.71 E-value=0.034 Score=45.69 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=60.6
Q ss_pred CCCCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC--CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 59 QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 59 ~~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~--pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+.|...+..|.|-.+|..+|-.||..|++.+- |..++|+++... .++-...+.|.+...|..-. .+||..|..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34445678999999999999999999999884 999999985421 34567899999999999999 999988754
No 104
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.70 E-value=0.048 Score=42.49 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=57.4
Q ss_pred cEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..|.|-++|..+|..||..+++.+ ..|..++|+++.. ..++-...+.|.+...|..-...+||..|+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 70 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 70 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 568899999999999999999876 4688999998522 2346689999999999999999999998764
No 105
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.70 E-value=0.052 Score=44.57 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=60.8
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+..|.|-.+|..+|-.||..++..+ ..|.+++|+++..-.++-...+.|.+...|..-...+||..|..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3457899999999999999999998865 46789999986533446689999999999999999999998764
No 106
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.69 E-value=0.034 Score=43.55 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=58.9
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|..+|-.||..+++.+- .|..++|+++... .++-...+.|.+...|..-...+||..|+.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578999999999999999999998764 6889999885322 235578999999999999999999998864
No 107
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.68 E-value=0.057 Score=44.12 Aligned_cols=71 Identities=7% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 4578999999999999999999988763 588999998532 2346689999999999999999999988865
No 108
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.67 E-value=0.052 Score=44.53 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC--CCCcceEEEEEecChhcHHHHHhhh-cCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~--~~pn~ymvLikF~~~~~A~~f~~~~-ng~~F~s 134 (484)
...++.|.|-.+|..+|-.||..+++.+- .|..++|+++. .-.++-.+.+.|.+...|......+ ||..|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34678999999999999999999988764 68899999861 2234667899999999999999999 8998875
No 109
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.63 E-value=0.091 Score=43.82 Aligned_cols=71 Identities=8% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+- .|..++|+++. .-.++-...+.|.+...|+.....+||..|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568899999999999999999998763 48899999854 22346678999999999999999999988764
No 110
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.62 E-value=0.046 Score=45.60 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|...+..|.|-++|..+|-.||..+++.+ ..|..++|+++.. ++-...+.|.+..+|..-...+||..|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNTPE--TRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECSTT--TTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCC--CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34457899999999999999999998876 4688899998533 35578899999999999999999998864
No 111
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.52 E-value=0.11 Score=41.94 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=++|..+|-.||..+++.+ ..|..++|+++. .-.++-...+.|.+...|..-...+||..|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY-GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357899999999999999999999876 368889999854 12245689999999999999999999988864
No 112
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.06 Score=43.82 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+- .|..++|+++... .++-...+.|.+...|..-...+||..|..
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4678999999999999999999998774 5889999985321 235578999999999999999999998865
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.39 E-value=0.045 Score=45.69 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+- .|..++|+++.+. ++-...+.|.+...|+.-...+||..|+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTC-CCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcC-CEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3578899999999999999999998774 5888999986543 57789999999999999999999998765
No 114
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.38 E-value=0.068 Score=44.04 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=59.1
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|=.+|..+|-.||..+++.+ ..|.+++|+++..+ .++-...+.|.+..+|..-...+||..|..
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56889999999999999999998776 46899999985421 245578999999999999999999998865
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.067 Score=41.90 Aligned_cols=66 Identities=8% Similarity=0.121 Sum_probs=56.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhh-cCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~-ng~~F~s 134 (484)
..++.|.|-++|..+|..||..+++.+- .|..++|+++ +-...+.|.+...|..-...+ ||..|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFG-EIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTS-CEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCC-CEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 4568899999999999999999998774 3899999983 337899999999999999987 8887764
No 116
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.36 E-value=0.056 Score=47.42 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=60.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC---CcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~---pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
+++.|.|-++|..+|-.||..++..+- .|..++|+++... .++-...+.|.+...|+.....+||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 568899999999999999999998874 5999999996544 35778999999999999999999998764
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.088 Score=41.91 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=56.0
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|..||..+++.+-. |.+++|+++ ...+.|.+...|+.-...+||..|+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGR-VIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSC-EEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCC-EEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35788999999999999999999987743 899999873 68899999999999999999988864
No 118
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.30 E-value=0.079 Score=43.29 Aligned_cols=71 Identities=7% Similarity=0.026 Sum_probs=59.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|=.+|..+|..||..+++.+- .|..++|+++.. -.++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4578999999999999999999998874 688999998531 2245578899999999999999999988865
No 119
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.069 Score=43.19 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=59.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccccccee-EEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-ELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~-~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sl 135 (484)
..++.|.|-.+|..+|-.||..++..+-. |. +++|+++.. -.++-...+.|.+...|+.-...+||..|..-
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGE-TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTC-CCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCC-cceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 35789999999999999999999987754 55 899998532 12456799999999999999999999888653
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.28 E-value=0.18 Score=42.67 Aligned_cols=71 Identities=6% Similarity=-0.003 Sum_probs=60.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+- .|.+++|+++..-.++-...+.|.+...|..-...+||..|..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4578999999999999999999988763 5889999985422346689999999999999999999998865
No 121
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.26 E-value=0.048 Score=44.07 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=58.5
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++.|.|=++|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+...|......+||..|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 57899999999999999999998774 588999998532 2346788999999999999999999988865
No 122
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.24 E-value=0.11 Score=41.99 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=58.6
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|-.||..+++.+ ..|..++|+++.. -.++-...+.|.+...|..... +||..|+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 357899999999999999999999886 4689999998532 2246689999999999999988 89988865
No 123
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.20 E-value=0.075 Score=43.54 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcC
Q 011525 60 NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 60 ~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F 132 (484)
.+...++.|.|=.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+...|..-...+||..+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3445678999999999999999999988774 588899998532 12466899999999999999999999876
No 124
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.18 E-value=0.047 Score=42.95 Aligned_cols=70 Identities=6% Similarity=0.151 Sum_probs=58.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCC--cceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAME--DRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~p--n~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|..+|-.||..+++.+ ..|..++|+++.... ++-...+.|.+...|..-...+||..|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY-GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 46789999999999999999998776 478889998854221 45688999999999999999999998865
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.14 Score=40.81 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|-.||..+++.+- .|..++|+++ ...+.|.+...|..-...+||..|..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYG-PVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTS-CCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4578999999999999999999998864 5888998873 78899999999999999999998864
No 126
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.14 E-value=0.097 Score=42.53 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=59.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+ ..|..++|+++.. -.++-...+.|.+...|..-...+||..|..
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357889999999999999999999876 4678899988522 1246688999999999999999999988764
No 127
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.12 E-value=0.087 Score=45.59 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=59.6
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+- .|..++|+++... ..+-...+.|.+...|+.....+||..|+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568899999999999999999998764 5889999985321 346678999999999999999999988865
No 128
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.08 E-value=0.044 Score=44.01 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=58.1
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEE-EEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL-IFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~-riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.+|..+|-.||..+++.+- .|..+ +|+++. .-.++-...+.|.+...|+.-...+||..|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 468899999999999999999998874 46777 888852 22346689999999999999999999998764
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.06 E-value=0.12 Score=41.79 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|-.||..++..+- .|..++|+++ +-...+.|.+...|......+||..|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4578999999999999999999998774 5788898873 3378999999999999999999998865
No 130
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.04 E-value=0.069 Score=45.24 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=60.3
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+...+..|.|-++|..+|-.||..+++.+- .|..++|+++. ...++-...+.|.+...|..-...+||..|+.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 334578999999999999999999988764 68899999853 11235578899999999999999999998865
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.02 E-value=0.047 Score=44.56 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+ ..|..++|+++..-.++-...+.|.+...|+.-.. ||..++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g 75 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG 75 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC
Confidence 356889999999999999999998776 46889999996432357789999999999998888 5554443
No 132
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.97 E-value=0.062 Score=43.38 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=59.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC----CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~----pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.+|..+|-.||..+++.+- .|..++|+++... .++-...+.|.+...|..-...+||..|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999988763 5889999985421 346789999999999999999999988764
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.90 E-value=0.089 Score=45.62 Aligned_cols=69 Identities=22% Similarity=0.343 Sum_probs=58.4
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++.|.|-++|..+|-.||..+++.+- .|..++|+++. .-.++-...+.|.+...|......+||..|..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 57899999999999999999998764 58999999954 12245678999999999999999999988764
No 134
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=94.86 E-value=0.12 Score=43.20 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=59.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..++..+ ..|..++|+++.. -.++-...+.|.+...|......+||..|..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457899999999999999999998876 3588999998532 1346688999999999999999999987754
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=94.84 E-value=0.039 Score=45.21 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=57.2
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC--CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~--~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....+.|.|-++|..+|-.||..|++.+- |..++|+++. .-.++-...+.|.+...|..-. .+||..|+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 34678999999999999999999999885 9999999853 2234567899999999999999 899988865
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.82 E-value=0.085 Score=45.18 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=59.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|..||..+++.+ ..|..++|+++.. -.++-...+.|.+...|..-...+||..|..
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457899999999999999999999876 4588899988521 2346689999999999999999999987764
No 137
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.77 E-value=0.21 Score=40.42 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=56.6
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...++.|.|=.+|..+|-.||..+++.+- .|+|+++..-.++-...+.|.+...|+.....+||..|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g----~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKAT----FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCS----EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC----EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34678999999999999999999988753 4577775333356689999999999999999999988864
No 138
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.75 E-value=0.13 Score=45.96 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=59.8
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...++.|.|-++|..+|-.||..+++.+ ..|..++|+++.. -.++-..++.|.+...|..-...+||..|+.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3457889999999999999999999887 4689999998522 1236688999999999999999999988865
No 139
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.68 E-value=0.083 Score=43.84 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=58.9
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccccccee-------EEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-------ELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~-------~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+-.-.+ .++|+++. .-.++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 45789999999999999999999988754333 68998852 22346689999999999999999999998864
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.094 Score=45.43 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=57.9
Q ss_pred EEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 67 ~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.|.|-++|..+|..||..++..+- .|.+++|+++....++-...+.|.+...|......+||..+..
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEECCCCCcCCHHHHHHHHHhcC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 688999999999999999998774 6999999986544567789999999999999999999998754
No 141
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=94.67 E-value=0.15 Score=40.18 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=56.8
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+..|.|-++|..+|-.||..++..+ ..|.+++|+++. ...++-...+.|.+...|..-. .+||..|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 5789999999999999999999876 468899999853 2234667899999999999999 999988765
No 142
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.65 E-value=0.077 Score=41.48 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=56.0
Q ss_pred CcEEEEeccCCCC------ChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYL------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~------~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++.|.|-++|..+ |..||..+++.+- .|..++|.+..+ .++-...+.|.+..+|..-...+||..|..
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~i~~v~i~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTC-CEEEEECCCBTT-BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC-CeEEEEecCCCC-cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 4678999999998 6688888887764 488888887544 346688999999999999999999998864
No 143
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.63 E-value=0.077 Score=43.21 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=59.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|=++|..+|-.||..+++.+- .|..++|+++. ...++-...+.|.+...|..-...+||..|..
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999998764 58889999853 12346688999999999999999999998865
No 144
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.60 E-value=0.12 Score=42.60 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+ ..|..++|.++.. ++-...+.|.+...|+.....+|+..|+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNRRG--GPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCSSS--SSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCC--CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 357899999999999999999999886 3588889877432 46678899999999999999999987764
No 145
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.55 E-value=0.13 Score=43.27 Aligned_cols=68 Identities=10% Similarity=0.154 Sum_probs=58.8
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++.|.|=++|..+|-.||..+++.+ ..|..++|+++.+. ++-...+.|.+.++|..-...+||..+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4679999999999999999999876 46899999996543 46678999999999999999999987765
No 146
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.54 E-value=0.25 Score=43.17 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=59.8
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|..||..+++++-. |..++|+++..-.++-...+.|.+...|..-...+||..+..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 5678999999999999999999987744 899999996433347789999999999999999999987653
No 147
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.53 E-value=0.14 Score=42.74 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=57.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+.|.|-.+|..+|-.||..++..+- .|..++|+++.. -.++-...+.|.+...|......+|+ .|..
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 4578999999999999999999998763 489999998532 23466889999999999999999998 5654
No 148
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.52 E-value=0.39 Score=55.90 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhH
Q 011525 378 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 378 ~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq 443 (484)
.++..+++|.+.+++..+.+.+..+.+++++.++.++..+.+....+++..|++|+.||.--+..+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333333334444444444444444444455556666777777776434333
No 149
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.46 E-value=0.18 Score=44.45 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=60.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+- .|..++|+++..+ .++-...+.|.+...|..-...+||..|..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578999999999999999999998774 4889999985321 246689999999999999999999988854
No 150
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.40 E-value=0.12 Score=42.57 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=58.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC--CcceEEEEEecChhcHHHHHhhhc--CCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLN--GKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~--pn~ymvLikF~~~~~A~~f~~~~n--g~~F~s 134 (484)
.++.|.|-++|..+|-.||..+++.+-..|.+++|++.+.. .++-...+.|.+...|..-...+| +..|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 46889999999999999999999988777999999832322 457789999999999999999995 466654
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.37 E-value=0.16 Score=41.55 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=58.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+.|.|=.+|..+|-.||..++..+ ..|..++|+++.. -.++-...+.|.+...|...... |+..|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 457889999999999999999999876 4688999999532 23466789999999999999988 8887765
No 152
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.31 E-value=0.18 Score=41.40 Aligned_cols=71 Identities=6% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhc------CCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLN------GKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~n------g~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+...|......+| |..|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4578899999999999999999998764 589999998532 1346689999999999999999999 877754
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.29 E-value=0.088 Score=43.10 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=54.5
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.+|..+|..||..+++.+- .|..++|+++ ...+.|.+...|......+||..|+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFG-KLERVKKLKD-------YAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHS-CEEEEEECSS-------CEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEECC-------EEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 468899999999999999999988763 4778888862 67899999999999999999987764
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.29 E-value=0.18 Score=40.91 Aligned_cols=68 Identities=6% Similarity=0.054 Sum_probs=56.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..++..+ ..++++++.. -.++-...+.|.+...|+.....+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 457889999999999999999998855 4788888432 1245688999999999999999999988764
No 155
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.25 E-value=0.15 Score=43.25 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=59.5
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccc--cceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHI--DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~--~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
......|.|=.+|..+|-.||..|+..+- ..|..++|+++..--++-...+.|.+...|+.-.. .||..+..
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 34578899999999999999999998873 34899999985433346789999999999999888 88877754
No 156
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.15 E-value=0.12 Score=42.63 Aligned_cols=65 Identities=8% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|..+|..||..+++.+- .|..++|+++ +-...+.|.+...|......+||..|..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 468899999999999999999998764 6889999984 3478899999999999999999987764
No 157
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.13 E-value=0.24 Score=42.53 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+.|.|=++|..+|-.||..+++.+- .|..++|+++..+ .++-...+.|.+...|......+||..|..
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578899999999999999999988774 5889999985321 236688999999999999999999988765
No 158
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=94.13 E-value=0.11 Score=40.78 Aligned_cols=66 Identities=9% Similarity=0.224 Sum_probs=56.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccc---c-------ceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI---D-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~---~-------~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F 132 (484)
..+..|.|=++|..+|..||..++..+. . .|.++++.++ +-...+.|.+..+|.... .+||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 3568899999999999999999988772 3 7999998873 347899999999999999 9999887
Q ss_pred CC
Q 011525 133 SP 134 (484)
Q Consensus 133 ~s 134 (484)
+.
T Consensus 78 ~g 79 (87)
T 2hzc_A 78 QG 79 (87)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.10 E-value=0.1 Score=43.77 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccce-eEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHV-EELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i-~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|-.+|..+|-.||..|+..+ ..| ..++|+++..-.++-...+.|.+...|..-... |+..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 456889999999999999999999988 556 779999855223466789999999999999877 8877754
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.24 Score=42.79 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=59.6
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|..+|..||..+++.+ ..|..++|+++.. -.++-...+.|.+..+|..-...+||..|+.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 457789999999999999999998765 5688899998532 2346689999999999999999999998864
No 161
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.02 E-value=0.52 Score=41.22 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=59.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|=++|..+|-.||..+++.+- .|..++|+++. .-.++-...+.|.+...|..-...+||..|+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578999999999999999999987664 68899999852 12346678999999999999999999988865
No 162
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.98 E-value=0.2 Score=41.67 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCCcEEEEeccCCCCChhHHH---HhhcccccceeEEEEEecCCC----CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFV---RFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l---~F~~~~~~~i~~~riir~~~~----pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
......|.|-++|..++-.||. .+++.+ ..|.+++|+++... .++....+.|.+.+.|..-...+||..|..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3457889999999999999999 777665 46888999985432 245789999999999999999999998764
No 163
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.16 Score=41.21 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=++|..+|-.||..+++.+ ..|.+++|++ ++-...+.|.+...|......+||..|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 356899999999999999999998877 3478888885 24478999999999999999999988764
No 164
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=93.89 E-value=0.18 Score=42.55 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=57.8
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|-.||..|++.+ ..|..++|+++. .-.++-...+.|.+...|.... .+||..|..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC-GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT-SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 36789999999999999999999876 478899999852 1234678899999999999999 899988765
No 165
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=93.81 E-value=0.27 Score=42.70 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=59.9
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|..+|-.||..+++++- .|..++|+++. ...++-.+.+.|.+..+|..-...+||..|+.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCC-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 3568899999999999999999998764 68899999854 12246679999999999999999999998854
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.78 E-value=0.23 Score=43.49 Aligned_cols=71 Identities=18% Similarity=0.335 Sum_probs=60.0
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|..+|-.||..+++++ ..|..++|+++. .-.++-...+.|.+...|..-...+||..|+.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 346889999999999999999999876 468999999963 22346789999999999999999999988864
No 167
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=93.77 E-value=0.28 Score=38.46 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=55.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
..++.|.|=++|..+|..||..+++.+ ..|..++|+++.. -.++-...+.|.+...|..-... ++..|+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~ 78 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD 78 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC
Confidence 457899999999999999999998776 4788999998532 23466789999999999998855 665444
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.73 E-value=0.32 Score=41.98 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=59.2
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|..||..+++.+ ..|..++|+++... .++-.+.+.|.+..+|..-...+||..|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 46789999999999999999999876 46888999985421 236678999999999999999999998865
No 169
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.72 E-value=0.16 Score=41.15 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCCCcEEEEeccCCCCChhHHH----HhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l----~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|...++.|.|=++|..+|-.||. .+++.+ ..|.+++|+++... +-...+.|.+...|..-...+||..|..
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34467889999999999999998 555544 46899999985433 4569999999999999999999988764
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=93.69 E-value=0.15 Score=42.17 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccc--cceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHI--DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~--~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
......|.|-++|..+|-.||..|++.+- ..|..++|+++..-.++-...+.|.+...|..-.. .||..++.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 35678899999999999999999999873 34889999985432346689999999999999888 88877754
No 171
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.67 E-value=0.22 Score=41.42 Aligned_cols=69 Identities=12% Similarity=0.228 Sum_probs=57.4
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|-.||..|++++- .|.+++|+++..-.++-...+.|.+.++|..... .||..|+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 357899999999999999999998874 5899999985433356788999999999999888 78877764
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.63 E-value=0.37 Score=38.52 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=55.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEE-EEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELI-FIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~r-iir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|..+|-.||..+++.+ ..|..+| |+++.. ..+ ..+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~-~~~--afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSE-TAV--VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSS-SEE--EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCC-CCE--EEEEECCHHHHHHHHHHhCCCEECC
Confidence 356889999999999999999998766 3588886 666322 223 9999999999999999999998864
No 173
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.62 E-value=0.11 Score=41.41 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=56.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|-.||..++..+ .|..++|.+ ++-...+.|.+...|+.-...+||..|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVDR-----NKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEEG-----GGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEeC-----CCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35779999999999999999999999 799999853 45578999999999999999999988765
No 174
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.61 E-value=0.18 Score=40.60 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=55.1
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
.++.|.|-.+|..+|-.||..+++.+- .|..++|+++ +-...+.|.+...|..-...+||..|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFG-SIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTS-CEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 457899999999999999999998774 4788888873 336789999999999999999999886
No 175
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.59 E-value=0.41 Score=38.83 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhh
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSN 126 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~ 126 (484)
+...++.|.|-++|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+...|..-...
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 334578899999999999999999998774 588999998532 23467899999999999988773
No 176
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.58 E-value=0.062 Score=43.44 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=56.0
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhh-cCCcCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNL-NGKRFS 133 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~-ng~~F~ 133 (484)
|++|.|=++|..+|-.||..+++++-..|.++||+++.. ..++-...+.|.+.+.|..-.... |+..|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~ 71 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL 71 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC
Confidence 578999999999999999999998866799999998532 245678999999999999887654 444443
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.58 E-value=0.18 Score=45.91 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.+|..+|-.||..|+..+ ..|.+++|+++.. -.++-...+.|.+...|......+||..|..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPF-GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 46789999999999999999999877 4689999998531 1246689999999999999999999988865
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=93.51 E-value=0.14 Score=44.57 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=58.1
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++.|.|-++|..+|..||..++..+- .|.+++|+++.. ..++-.+.+.|.+...|......+||..|..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 57899999999999999999998764 589999998532 1245678999999999999999999988864
No 179
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.49 E-value=0.31 Score=38.65 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|..||..+++.+- .|..++|+| -...+.|.+...|+.-...+||..|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG-KVLECDIIK-------NYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS-CEEEEEEET-------TEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3578999999999999999999998774 588888885 168899999999999999999988765
No 180
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.48 E-value=0.31 Score=39.38 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccc-cceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~-~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+- ..|..+++.|. ...+.|.+...|......+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g-------~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-------YAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS-------EEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC-------eEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3578999999999999999999998883 57778887652 78899999999999999999998764
No 181
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.45 E-value=0.17 Score=42.07 Aligned_cols=69 Identities=10% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|-.||..|+..+ ..|..++|+++.. ..++-...+.|.+...|+... .+||..|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 35789999999999999999998776 4788999998542 134567899999999999999 999988765
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.31 E-value=0.43 Score=39.13 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=57.0
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|=++|...|-.||..|+..+-.-...++|+++..-.++-...+.|.+...|..-... |+..+..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 4578999999999999999999998875433348888853323466899999999999999888 8877765
No 183
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.28 E-value=0.39 Score=40.27 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=59.0
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+..|.|=.+|..+|-.||..+++.+ -.|..++|+++.. -.++-...+.|.+..+|+.-...+||..|..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 5789999999999999999988776 5688999999543 2346678999999999999999999998865
No 184
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.27 E-value=0.14 Score=41.52 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=55.4
Q ss_pred cEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+.|.|=++|..+|..||..+++.+- .|..++|+++ ++-...+.|.+...|..-...+||..|+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 64 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG-PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICG 64 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC-CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECC
Confidence 3678899999999999999988774 5889999985 35589999999999999999999988765
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.11 E-value=0.38 Score=43.67 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....|.|-++|..+|..||..+++.+ ..|..++|+++... .++-.+.+.|.+.+.|..-...+||..|..
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAF-GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 35789999999999999999999876 47999999995321 236678999999999999999999998865
No 186
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=93.09 E-value=0.18 Score=38.49 Aligned_cols=65 Identities=8% Similarity=0.174 Sum_probs=52.6
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|=++|..+|..||..+++.+ ..|..++|+++. ...++-...+.|.+...|+.... .||..|+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred EEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 6678999999999999999876 348888998853 22346688999999999988876 88887764
No 187
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=93.04 E-value=0.1 Score=41.85 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=55.9
Q ss_pred CCcEEEEeccCCCCChhHHH----HhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l----~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|..+|-.||. .+++.+ ..|..++|.++. .++-...+.|.+...|......+||..|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSRSL--KMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCHHH--HHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEcCC--CcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 57899999999999999999 666555 367888888642 235578899999999999999999988854
No 188
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.02 E-value=0.16 Score=42.84 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=56.4
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....|.|-++|...|-.||..|+.++ .|..++|+++..--++-...+.|.+...|+.-. ..|+..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 46789999999999999999999998 789999998543224668999999999998887 678876654
No 189
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.97 E-value=0.29 Score=40.41 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=57.4
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+..|.|=.+|..+|-.||-.++..+- .|..++|+++ -...+.|.+...|..-...+||..|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 34578899999999999999999998774 5899999984 278899999999999999999988754
No 190
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.90 E-value=3.6 Score=39.67 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011525 397 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ 432 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQ 432 (484)
+.++++....++..+++.........++.+.+++.+
T Consensus 123 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 123 KSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333334444333
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=92.90 E-value=0.33 Score=43.38 Aligned_cols=71 Identities=6% Similarity=0.062 Sum_probs=57.2
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...++.|.|-++|..+|-.||..|++.+- .|.+++|+++..+ .++-...+.|.+...|...... ++..|+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g 81 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG 81 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC
Confidence 34678999999999999999999998874 4899999995321 2466799999999999999876 6655543
No 192
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.85 E-value=0.42 Score=38.31 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=55.9
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+.|.|=.+|..+|-.||..|+..+- .|..++++++... .++-...+.|.+...|..-...+||..|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 468899999999999999999998773 3445556653321 246789999999999999999999987765
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=92.81 E-value=0.45 Score=42.52 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=60.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|..+|..||..+++.+ ..|..++|+++. .-.++-...+.|.+...|..-...+||..|+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB-SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356899999999999999999999876 468999999853 22347789999999999999999999988864
No 194
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.80 E-value=0.44 Score=39.25 Aligned_cols=69 Identities=6% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|-.+|..+|-.||..|+.++- +..++|+++..--++-...+.|.+.+.|+.-.. .|+..+..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN--PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC--CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC--ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 3568899999999999999999999886 349999986432346688999999999998885 58877754
No 195
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=92.78 E-value=0.24 Score=39.49 Aligned_cols=68 Identities=10% Similarity=0.205 Sum_probs=56.0
Q ss_pred EEEEeccCCCCChhHHHHhhcccc-cceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 67 CIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 67 ~l~il~vP~~~~~~d~l~F~~~~~-~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.|.|-++|..+|-.||..+++.+- ..|..++|+++.. -.++-...+.|.+..+|+.-...+||..|..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 577889999999999999998884 3799999999532 2346688999999999999999999998865
No 196
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=92.77 E-value=0.21 Score=39.44 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=55.4
Q ss_pred cEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+.|.|-++|..+|-.||..+++.+ ..|..++|+++.. ..++-...+.|.+.. |..-...+||..|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG 69 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC
Confidence 368899999999999999988776 3588899998532 234678899999999 999999999998865
No 197
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=92.76 E-value=0.14 Score=41.99 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCcEEEEeccCC------CCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPN------YLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~------~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+-+++|.|-++|. .++-.||..+++.+- .|..++|+++.. ..++-...+.|.+...|..-...+||..|..
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 4478999999999 999999999988764 788999998653 2346678999999999999999999998864
No 198
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=92.74 E-value=0.27 Score=44.87 Aligned_cols=71 Identities=6% Similarity=0.018 Sum_probs=59.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..|++.+ ..|..++|+++..-.++-.+.+.|.+...|......+||..|..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHT-SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 457899999999999999999998876 36788999985422345678999999999999999999998865
No 199
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.71 E-value=0.12 Score=42.70 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=26.5
Q ss_pred CCCcCccccCC-cCCCCCCcee--ecCCCccccccccc-cC
Q 011525 166 ELPTCPICLER-LDPDTSGILS--TICDHSFQCSCTAK-WT 202 (484)
Q Consensus 166 e~ptCpICLe~-l~~~~~givt--~~C~H~Fh~~Cl~~-w~ 202 (484)
+..+|++|++. +.++ +. +.|+|+||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~a----v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA----VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC----CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc----eEECCcCChHHhHHHCHHHhc
Confidence 56899999975 4555 44 89999999999996 64
No 200
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.70 E-value=0.27 Score=39.22 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=55.8
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+..|.|-.+|..+|..||..|+..+-. |..++++++... .++-...+.|.+...|......+||..|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCB-CTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-ccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 588999999999999999999987732 555666664321 246779999999999999999999988764
No 201
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.65 E-value=0.21 Score=41.08 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCcEEEEeccCCCCChhHHHHhhccccc-ceeEEEEEecCCC-CcceEEEEEecChhcHHHHHhhhcCCcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~-~i~~~riir~~~~-pn~ymvLikF~~~~~A~~f~~~~ng~~F 132 (484)
.=.+|.|=.+|..+|-.||..+++++-. .|.++||+++..+ .++-...+.|.+...|..-...+||...
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~ 78 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC
Confidence 4567999999999999999999999954 7899999995422 3466788999999999999999999753
No 202
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.49 E-value=0.49 Score=41.27 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=.+|..+|-.||..+++.+ ..|..++|+++ ++-...+.|.+...|..-...+||..|..
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYY-GPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHH-SCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh-CCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457899999999999999999998876 46899999984 25578999999999999999999988754
No 203
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.48 E-value=1.8 Score=46.10 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 374 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR 420 (484)
Q Consensus 374 ~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~ 420 (484)
.+|+.++..|+++.+..-..-+.|+.+++.++.+|++||-....+++
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777665544344477888889998899888876654444
No 204
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.45 E-value=0.39 Score=42.92 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=59.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhccccc-ceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~-~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+.+.|.|-++|..+|-.||..+++.+-. .|..++|+++.. -.++-...+.|.+..+|+.-...+||..|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5689999999999999999999988853 799999998532 1246678999999999999999999988765
No 205
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.35 E-value=2.2 Score=45.41 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=3.4
Q ss_pred HhHHHHHHh
Q 011525 427 LDLEEQIRD 435 (484)
Q Consensus 427 ~eL~EQvrD 435 (484)
.+|++++.+
T Consensus 561 ~~l~~e~~~ 569 (597)
T 3oja_B 561 AELRQETSL 569 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 206
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=92.16 E-value=0.39 Score=39.49 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=57.5
Q ss_pred CCCcEEEEeccCCCC------ChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYL------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~------~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+.++.|.|-++|..+ |-.||..+++.+ ..|..++|++..+ .++-...+.|.+...|..-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~v~~v~i~~~~g-~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG-SCEEEEECCCBTT-BSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC-CCEEEEEeeCCCC-CeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 446899999999988 678888888776 3488889887544 346688999999999999999999998864
No 207
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=91.99 E-value=0.18 Score=43.88 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=59.0
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|..||..+++.+- .|..++|+++. ...++-...+.|.+...|..-...+||..|+.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3567899999999999999999998764 68889998853 12345578899999999999999999998865
No 208
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=91.98 E-value=0.39 Score=42.20 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=59.6
Q ss_pred CCCCcEEEEeccCCCCChhHHHHhhcccccc--eeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDH--VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~--i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+..|.|=++|...|-.||..|+..+-.. |..++|+++..--++-...+.|.+.+.|+.-.. +||..++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 3467899999999999999999999988443 889999985432346689999999999998888 89887765
No 209
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.98 E-value=0.34 Score=40.67 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCCCc
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAE 136 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle 136 (484)
.+..|.|-.+|..+|-.||..|+..+- .|..++|+++ -...+.|.+...|..-...+||..|+.-.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999999999999998774 6889999884 37889999999999999999999887643
No 210
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.94 E-value=0.83 Score=37.67 Aligned_cols=69 Identities=9% Similarity=0.135 Sum_probs=55.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccc--ccce-eEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSH--IDHV-EELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~--~~~i-~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+ +..+ ..+++.. . .++-...+.|.+...|......+||..|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-g--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-G--RMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-S--SSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-C--ccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 357899999999999999999998877 3332 5566552 2 245688999999999999999999988854
No 211
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=91.92 E-value=0.53 Score=40.90 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=55.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccccccee--EEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE--ELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~--~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|=++|...|-.||..|+.++ .|. .++|+++..--++-...+.|.+...|+.-... ++..|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 457889999999999999999999999 566 89999854322466789999999999888775 5555543
No 212
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.92 E-value=0.06 Score=52.13 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=35.3
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccccC----Cccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~----~~~CPvCR~~ 212 (484)
..+.|.+|.+..... ..-..|++.||..|+.+|- ...||.|+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 488999999988753 4444599999999999983 4589999764
No 213
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=91.83 E-value=2.4 Score=34.70 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
...++.+++..+.+.+..++.+..-+..|......+..++.+++++...+.+ +..+|+.+|.||---|
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~----~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS----KNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666666666655555557777777665554 4468888888885444
No 214
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=91.79 E-value=0.41 Score=39.79 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=55.2
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+- .|..++|++ -...+.|.+...|......+||..|+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~k-------g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFG-PMKEVKILN-------GFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEET-------TEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4578999999999999999999988764 578888883 278899999999999999999998854
No 215
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.79 E-value=0.41 Score=36.43 Aligned_cols=66 Identities=14% Similarity=0.270 Sum_probs=53.1
Q ss_pred EEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 67 ~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.|.|=++|..+|..||..+++.+ ..|..++|+++.. ..++-...+.|.+...|..-....| ..++.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 47888999999999999999876 3478899998532 2346688999999999999999877 55544
No 216
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=91.72 E-value=0.62 Score=38.35 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCCCcEEEEeccCCC-CChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~-~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|...++.|.|=.+|.. +|-.||..++..+- .|..++| ++-...+.|.+...|+.....+||..|+.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYG-RVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGS-CCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3345689999999999 99999999998764 4777777 23378899999999999999999988864
No 217
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.70 E-value=3 Score=37.00 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
..+-+++.+.+.++.+.+.+......|.......+.+++.++.+. ....+++.+|++|+..|---+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~----~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI----KELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544444434444444444444444444332 223356788888888874333
No 218
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.67 E-value=0.92 Score=36.40 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+-. |. ++++.+ . ++-...+.|.+...|..-...+||..|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-v~-~~~~~~-~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGS-VP-LRLTWQ-G--PRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTC-CC-SEEEEE-T--TTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCC-EE-EEEEcC-C--CCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999987743 22 466653 2 34478899999999999999999998865
No 219
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.61 E-value=2.3 Score=36.65 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 403 IMRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 403 ~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
.+..+++.|.++..-+.+..+++|.+|+.||.+
T Consensus 87 dLE~~iesL~eEl~FLKk~heeEl~eLq~qi~~ 119 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKKLHEEEIQELQAQIQE 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355566666666666666677788888877653
No 220
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=91.54 E-value=0.26 Score=39.42 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=53.6
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|=++|..+|-.||..+++.+ -.+++++..+ .++-...+.|.+...|..-...+||..+..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCEEETT-EEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357899999999999999999999876 2333443333 356789999999999999999999987754
No 221
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=91.26 E-value=0.81 Score=37.08 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=54.9
Q ss_pred CCCCcEEEEeccCC-CCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 62 NSRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 62 ~~~~~~l~il~vP~-~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...++.|.|=++|. .+|-.||..+++.+ ..|..++|.+ -...+.|.+...|..-...+||..|..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~~-------g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIKN-------AFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEECS-------SEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34678999999998 99999999999887 3477788742 378899999999999999999988754
No 222
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=91.18 E-value=0.49 Score=44.22 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=57.8
Q ss_pred CCCcEEEEeccCC-CCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~-~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|. .+|..||..|+..+- .|..++|+++. +-...+.|.+...|......+||..|..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G-~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4578999999999 999999999988774 39999999943 2358999999999999999999998865
No 223
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=91.13 E-value=0.66 Score=44.03 Aligned_cols=72 Identities=10% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccc-cceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~-~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++.+.|.|-.+|..+|-.||..++..|- ..|..++|+++.. -.++-...+.|.+...|+.-...+||..|..
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G 139 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 139 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC
Confidence 3567899999999999999999998884 3899999999532 2346679999999999999999999998865
No 224
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.09 E-value=0.57 Score=42.21 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=58.4
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
.+..|.|-++|..+|-.||..+++.+--.|..++|++++ +-...+.|.+...|..-...+||..|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 478999999999999999999998884389999998843 448999999999999999999999886
No 225
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=91.01 E-value=0.7 Score=38.67 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F 132 (484)
.+.+|.|=.+|...|-.||...+++| ..|..++|++. +-...+.|.+..+|..-...+||.++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 47899999999999999999998887 56889999973 33899999999999999999998763
No 226
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=91.01 E-value=0.66 Score=44.37 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=60.5
Q ss_pred CCCcEEEEeccCCCC-ChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYL-SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~-~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|..+ |..||..+++++ ..|..++|+++..-.++-.+.+.|.+...|..-...+||..|+.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV-HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS-SCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC-CCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 357889999999997 889999999887 46888999985433457789999999999999999999998855
No 227
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.79 E-value=0.51 Score=39.21 Aligned_cols=69 Identities=7% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+.|.|-.+|..+|-.||..++..+- .|..++|+++.. -.++-...+.|.+...|...... |+..|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 468899999999999999999987763 578899998532 22456789999999999999888 8877754
No 228
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=90.63 E-value=0.9 Score=39.18 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccc--cc-----eeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI--DH-----VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~--~~-----i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..+++.+- .. +..+++.++. .++-...+.|.+...|..-...+||..|..
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG--RMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET--TTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC--CcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3568899999999999999999998873 22 3567777643 357789999999999999999999998864
No 229
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=90.37 E-value=0.73 Score=42.49 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....|.|-.+|..+|-.||..++..+ ..|..++|+++.+ .++....+.|.+.+.|..-...+||..++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 35679999999999999999998876 4688999999654 357889999999999999999999988764
No 230
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.22 E-value=1.3 Score=39.33 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=55.9
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....|.|-++|..+|-.||..++..+ ..|..++|+++.. -.++-...+.|.+...|..-... ||..|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC
Confidence 45789999999999999999999876 4689999998532 12466799999999999988766 7776654
No 231
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.20 E-value=0.33 Score=43.83 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCcEEEEeccCC-CCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~-~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|. .+|-.||..+++.+-. |.+++|+++. +-...+.|.+...|......+||..|..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~-i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGD-VQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCC-CSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCC-EEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 368899999999 9999999999988744 8999999843 2358999999999999999999988865
No 232
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.19 E-value=1.1 Score=37.88 Aligned_cols=72 Identities=8% Similarity=0.157 Sum_probs=54.0
Q ss_pred CCCCCcEEEEeccCCCCChhHHHHhhcccccceeE-EEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE-LIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 61 ~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~-~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|......|.|-++|..+|-.||..|+..+-. |.. +.|..+..-.++-...+.|.+...|+.-.. .||..|..
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 3445689999999999999999999987733 333 233332222246789999999999999888 89988865
No 233
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.87 E-value=5.2 Score=41.37 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhH
Q 011525 371 SKMQDIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l----~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq 443 (484)
+....||++|+++++....+ ..-|.+.+..|+.+.+++-+-++ .+++.+.+|.+|+.||.|+-..++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK----KVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777666654333 23455566666666665544332 23344456667777777766655544
No 234
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.77 E-value=0.57 Score=39.04 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|=.+|..+|-.||..+++.+ ..|..++|++ ++-...+.|.+...|..-...+||..|..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF-GSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 35789999999999999999998876 3577788775 23468999999999999999999998864
No 235
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=89.67 E-value=1.1 Score=41.22 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=58.1
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
...+.|.|=++|..+|-.||..|++.+ ..|.+++|+++.. ..++-...+.|.+..+|..-...+|+..+..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPA-GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhh-CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 346789999999999999999999876 4689999999532 1245678999999999999999999987654
No 236
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.60 E-value=0.42 Score=38.01 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcC-CcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG-KRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng-~~F~s 134 (484)
..++.|.|-.+|..+|-.||..+++.+-.-|..+.+.. +-...+.|.+...|+.-...+|| ..|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE------TTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC------CCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 34678999999999999999999988865455555532 33788999999999999999999 77754
No 237
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=89.59 E-value=1.1 Score=42.67 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=59.2
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|..+|..||..+++.+- .|..++|+++.. -.++-...+.|.+...|......+||..|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFG-SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcC-CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 467899999999999999999998864 489999998532 2346679999999999999999999988764
No 238
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=89.54 E-value=0.68 Score=44.45 Aligned_cols=70 Identities=7% Similarity=0.091 Sum_probs=58.9
Q ss_pred CCCcEEEEeccCCC-CChhHHHHhhcccccceeEEEEEecCC--CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~-~~~~d~l~F~~~~~~~i~~~riir~~~--~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..+..|.|-++|.. +|-.||..+++.+ ..|..++|+++.. ..++-.+.+.|.+...|..-. .+||..|..
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g 280 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN 280 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC
Confidence 34689999999999 9999999999876 4688899998532 234778999999999999999 999998764
No 239
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=89.50 E-value=1.2 Score=35.74 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=54.0
Q ss_pred CCcEEEEeccCC-CCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~-~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.+|. .+|-.||..++..+ ..|..++|.+ -...+.|.+...|..-...+||..|..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIKN-------AFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEET-------TEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 478899999998 99999999999887 3477788753 278899999999999999999998864
No 240
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.49 E-value=4.6 Score=43.01 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 323 KVEAIVDEYNRLLATQLETQRQYYESL 349 (484)
Q Consensus 323 K~e~~~~EY~~LLtsQLEsQR~yyE~~ 349 (484)
+|..+.++.+.=|++.++.=|..||+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776
No 241
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.42 E-value=9.2 Score=34.55 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHHHHHHhHHH
Q 011525 417 TSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 417 ~~~~~~~~~i~eL~EQvrDLmf 438 (484)
..++.++..+..|++||.+|--
T Consensus 122 ~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 122 EQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788899999988844
No 242
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=89.40 E-value=1.5 Score=41.65 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F 132 (484)
.+..|.|-++|..+|-.||..+++.+- .|..++|+++..-.++-...+.|.+..+|..-...+|+..|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 467899999999999999999987764 78999999975434577899999999999999999955444
No 243
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.38 E-value=1.8 Score=35.86 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=52.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
.+..|.|=.+|..+|-.||..++++|- .|..++|+++ +-...+.|.+...|..-...+|+..
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG-~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCC
Confidence 478999999999999999999988874 6777898873 3378899999999999998887754
No 244
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=89.31 E-value=0.52 Score=40.91 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhh---hcCCcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSN---LNGKRF 132 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~---~ng~~F 132 (484)
.++.|.|-++|..+|-.||..+++.+- .|.+++|+++.. -.++-...+.|.+...|+..... ++|+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTC-CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc
Confidence 367899999999999999999998774 599999998531 12455788999999999998886 455444
No 245
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.88 E-value=1.6 Score=36.09 Aligned_cols=60 Identities=10% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng 129 (484)
.++.|.|=.+|..+|-.||..++.+| ..|..++|+++ +-...+.|.+...|..-...+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 47899999999999999999998887 35778888873 34789999999999998887754
No 246
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=88.78 E-value=1.3 Score=41.28 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=58.2
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
.+..|.|-++|..+|-.||..+++.+--.|..++|++++ +-...+.|.+...|..-...+||..|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----CcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 368899999999999999999999884389999998743 347899999999999999999999886
No 247
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=88.67 E-value=1.5 Score=36.17 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=59.7
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCC--CCcceE-EEEEecChhcHHHHHhhhcCCcCCCCcccceeeEE
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLF 144 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~--~pn~ym-vLikF~~~~~A~~f~~~~ng~~F~sle~e~C~~v~ 144 (484)
|.|=-+|..||-++|+.-+++.- .+.-.+++..+. -|+.|+ +-|.|.+.+++.+|.+.|+|..|-.-... .+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~----~~ 78 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ----EY 78 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC----EE
T ss_pred EEEeCCCCCCCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC----Ee
Confidence 55667899999999999999874 466778887441 245555 67999999999999999999999643221 34
Q ss_pred EeEEEEee
Q 011525 145 MLSVEYTE 152 (484)
Q Consensus 145 v~~v~~~~ 152 (484)
...||+..
T Consensus 79 ~a~VE~AP 86 (91)
T 1uw4_A 79 PAIVEFAP 86 (91)
T ss_dssp ECEEEECS
T ss_pred eeEEEEcC
Confidence 45566543
No 248
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.40 E-value=7.1 Score=37.57 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
.+...++.++..+.++...++..-..+......++..+..+..+....+...++++..|..+...
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~ 168 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKED 168 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333444444444444444444444445555555555555543
No 249
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.06 E-value=0.64 Score=44.64 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|..||..+++.+-..|..++|+++....++-...+.|.+...|......+||..++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57889999999999999999999887558999999985433356679999999999999999999998865
No 250
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=87.96 E-value=0.92 Score=39.28 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=55.3
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC-CCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~-~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+..|.|-++|..+|..||..+++.+ ..|..++|+++. .-.++-.+.+.|.+..+|..-.. .||..|+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQW-GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTT-SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhC-ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 5689999999999999999999876 468899999853 12346788999999999988876 67777754
No 251
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=87.88 E-value=0.71 Score=38.26 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=52.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
..++.|.|-++|..+|-.||..+++.+ ..|..++|+++.. ..++-...+.|.+...|+...... +..|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~ 92 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD 92 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence 457889999999999999999999876 4588999998532 234667889999999999988764 34443
No 252
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=87.65 E-value=1.2 Score=42.40 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-++|..+|-.||..|+..+ ..|..++|.++ +-...+.|.+...|......+||..+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERY-GEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGG-CCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 356789999999999999999999776 34888999873 3478999999999999999999988754
No 253
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=87.44 E-value=0.61 Score=35.30 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=50.8
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|-++|..+|-.||..+++.+- .|..++|+++.. ..++-...+.|.+...|+.-... ++..++.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 67 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHS-CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 67789999999999999998763 478888887432 23466789999999999998876 6665543
No 254
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.33 E-value=2.6 Score=33.44 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....|.|=.+|..+|-.||..+++.+-. |.++ +.+.. ..+ ...+.|.+...|+.-.. +||..|+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~v--~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGP-VASV--VMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSC-EEEE--EECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCC-eEEE--EEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 4578999999999999999999987733 4455 44222 234 88999999999999999 99988765
No 255
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.29 E-value=14 Score=32.02 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHhHH
Q 011525 422 RDATILDLEEQIRDLT 437 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLm 437 (484)
.+.++.+|++||.|+-
T Consensus 109 le~e~~~Lk~~led~e 124 (129)
T 2fxo_A 109 LEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4467888888888874
No 256
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.01 E-value=0.99 Score=38.84 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=56.6
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccc---cceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI---DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~---~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|=++|...|-.||..|+.++- ..|..++|+++..--++-...+.|.+...|+.=... |+..+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 4568899999999999999999998874 357899999853222356789999999999988776 7776653
No 257
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=86.92 E-value=1 Score=38.47 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeE--EEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGK 130 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~--~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~ 130 (484)
..++.|.|-.+|..+|-.||..++..+- .|.. ++|+++.. -.++-...+.|.+. .|..-...+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G-~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA-VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC-CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC-CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4578899999999999999999998773 4433 89998541 22466788999999 999999999998
No 258
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=86.72 E-value=4.8 Score=32.13 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKN 400 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n 400 (484)
.+.++.+..||+.||.+.- ++.---..|=.+++.|.-|+..++....+++..
T Consensus 8 gkevEnLi~EN~eLl~TKN----------------------------aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 8 GREVENLILENTQLLETKN----------------------------ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567888888888876542 111111234445555555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 011525 401 QEIMRKKFKEIEER 414 (484)
Q Consensus 401 q~~~~~~~~~~e~~ 414 (484)
...+..+++++|++
T Consensus 60 ~~r~~~ri~elEeE 73 (77)
T 2w83_C 60 KLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 259
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.66 E-value=0.58 Score=37.76 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=51.4
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|=.+|..+|-.||..++..+-.-.. +++++.. -.++-...+.|.+...|..... +||..|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 5788999999999999999999887733222 3343211 1234578899999999999998 99988864
No 260
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=86.61 E-value=1.5 Score=38.01 Aligned_cols=65 Identities=9% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCcEEEEeccCCCCChhHHHHhhccc---cc-------ceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSH---ID-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~---~~-------~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
.+..|.|-++|..+|-.||..|+..+ .. .|..+++.++ +-...+.|.+.+.|.... .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46789999999999999999999877 22 7788887763 347889999999999999 89998775
Q ss_pred C
Q 011525 134 P 134 (484)
Q Consensus 134 s 134 (484)
.
T Consensus 77 g 77 (172)
T 2g4b_A 77 G 77 (172)
T ss_dssp T
T ss_pred C
Confidence 4
No 261
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=86.49 E-value=1.8 Score=39.86 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=54.8
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
+..|.|-++|...|..||-.|++.+- .|..+||+++....++-.+.+.|.+...|.......+. .|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~ 175 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYK 175 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eEC
Confidence 57899999999999999999998874 48999999854333567899999999999998876553 443
No 262
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.97 E-value=15 Score=42.67 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
.++.+++.+++++.+|++.+++-+..+. +.++.++..|+++...+
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444333333 34555555565554433
No 263
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=85.89 E-value=1.6 Score=41.58 Aligned_cols=65 Identities=9% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
.+++|.|-.+|..+|-.||..+++.+ ..|..++|+++. +-..++.|.+...|..-...+||..|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 46889999999999999999998876 578889999743 348999999999999999999998886
No 264
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.80 E-value=0.92 Score=37.74 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCC----CcceEEEEEecChhcHHHHHhhh---cCCcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNL---NGKRF 132 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~----pn~ymvLikF~~~~~A~~f~~~~---ng~~F 132 (484)
.++.|.|=++|..+|-.||..+++.+-. |. ++++++... .++-...+.|.+...|+.-.... ||+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGP-LV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCC-CC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCC-EE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 4678999999999999999999988743 44 777764432 34678999999999998887776 77655
No 265
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=85.68 E-value=1.5 Score=45.82 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=57.9
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+.|.|-+||..+|-.+|..|++.| ..|..++|+.+.. -.++-.+.+.|.+...|..-...+||..|+.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 5789999999999999999998876 4688899998531 1235689999999999999999999998865
No 266
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=85.69 E-value=0.16 Score=42.44 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=56.0
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeE--------EEEEecCC-CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--------LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~--------~riir~~~-~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|=++|..+|-.||..+++.+- .|.. ++|+++.. -.++-...+.|.+...|..-...+||..|..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 467899999999999999999988774 3444 78887421 1245678999999999999999999988864
No 267
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.41 E-value=14 Score=39.09 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHhHHH
Q 011525 424 ATILDLEEQIRDLTV 438 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf 438 (484)
++++++..+++.|+-
T Consensus 565 ~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 565 QETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 268
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.23 E-value=6.3 Score=34.15 Aligned_cols=53 Identities=8% Similarity=0.175 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 345 YYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 345 yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
+|..+++++....... .+++. .....+.++...+..|+-|...++..+..|..
T Consensus 12 ~y~~K~eel~~~~~~~-~~~l~-~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRH-GDDLR-NTKHEISEMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6777766665432211 01111 12233444444445555554444444444433
No 269
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=85.08 E-value=1.5 Score=38.34 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-++|..+|-.||..++.++ -.+++++..+ .++-...+.|.+...|..-...+||..|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEECSSS-SCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEecCCC-CCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56899999999999999999998875 3455554333 456789999999999999999999988765
No 270
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.05 E-value=2 Score=35.74 Aligned_cols=63 Identities=3% Similarity=0.050 Sum_probs=53.3
Q ss_pred CCCcEEEEeccCC-CCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 63 SRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 63 ~~~~~l~il~vP~-~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
..+..|.|=.+|. .+|-.||..++.+|- .|..++|+++. -...+.|.+...|..-...+|+..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG-~V~~v~i~~~k-----g~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILNKI-----NEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGS-CEEEEEECSSS-----SCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcC-CEEEEEEEcCC-----CEEEEEECCHHHHHHHHHHHcCCC
Confidence 3578999999999 999999999988874 58899999842 258899999999999999888754
No 271
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.98 E-value=5.5 Score=34.68 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 011525 345 YYESLLAEAKS 355 (484)
Q Consensus 345 yyE~~l~~~~~ 355 (484)
+|..+++++..
T Consensus 14 ~y~~K~eel~~ 24 (131)
T 3tnu_A 14 WFFTKTEELNR 24 (131)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 56666666553
No 272
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.70 E-value=0.96 Score=35.52 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=45.6
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHH
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADE 122 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~ 122 (484)
.++.|.|=.+|..+|-.||..+++.+- .|..++|+++ ++-...+.|.+...|+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG-DVMDVFIPKP----FRAFAFVTFADDQIAQS 57 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS-CCCEEECCSS----CCSCCEEECSCHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEEecC----CCCEEEEEECCHHHHHH
Confidence 468899999999999999999998774 4888999873 35578899999999964
No 273
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=84.56 E-value=1.5 Score=37.00 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=57.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|-++|..+|-.||-.++..+-..|..++|+..+ ++-...+.|.+.+.|+.=...+||..|+.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~---~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD---FDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS---SSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC---CCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568899999999999999999998875478888886422 34468899999999999999999988865
No 274
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=84.41 E-value=3.1 Score=39.54 Aligned_cols=68 Identities=12% Similarity=0.237 Sum_probs=55.8
Q ss_pred CCcEEEEeccCCCCChhHHH----HhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l----~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-++|..+|-.||- .++..+ ..|.+++|+++ + .++-...+.|.+...|..-...+||..|..
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~-G~i~~v~~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQF-GQILDILVSRS-L-KMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcCC-C-CcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 47899999999999999965 444433 57888999984 3 357789999999999999999999987755
No 275
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=84.10 E-value=3.8 Score=37.32 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=55.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+...|.|-.+|..+|-.||-..++.| -.|..++|+. +. ++...++.|.+...|..=....||..|..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~-k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFT-KN--NQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEE-SS--SCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEe-CC--CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 33456788999999999999988877 5688888876 22 57889999999999999999999998843
No 276
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=83.47 E-value=3.7 Score=35.33 Aligned_cols=68 Identities=13% Similarity=0.281 Sum_probs=53.0
Q ss_pred CCcEEEEeccCCCCChhHHH----HhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l----~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+..|.|-.+|..++..||- .+++.| ..|..++|.++. .++-...+.|.+..+|..-...+||..|..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDLSD--DNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECCCC--SSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEeccCC--CcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 46789999999999998864 344444 456778877643 246678899999999999999999998865
No 277
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=83.26 E-value=3.6 Score=37.43 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHH
Q 011525 327 IVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA-V----ADVNSKLIKNQ 401 (484)
Q Consensus 327 ~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~-l----~~ln~~L~~nq 401 (484)
++.||+.+|+.-+++=..|.++.-.. ... +.+.+...+....+.|+.+|.+..++.+. + .++-..+..+.
T Consensus 56 l~qel~~~l~~~ld~l~~~~~~l~~~----L~P-~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~ 130 (165)
T 1gs9_A 56 VTQELRALMDETMKELKAYKSELEEQ----LTP-VAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQST 130 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS----CCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655553332221 111 11222223445555555555544433221 1 22333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011525 402 EIMRKKFKEIEEREITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 402 ~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvr 434 (484)
+.++.++.-.-++.+ +......++|+.+|.
T Consensus 131 EelR~kl~P~~eeL~---~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 131 EELRVRLASHLRKLR---KRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHhhHHHHHHHhh
Confidence 455555443333322 222344556666654
No 278
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.23 E-value=4 Score=34.23 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng 129 (484)
.++.|.|=.+|..+|-.||..++++|- .|..++|+++ +-...+.|.+..+|..-...+++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHC-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 468999999999999999999988874 5899999984 33788999999999999888765
No 279
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=83.13 E-value=0.79 Score=40.37 Aligned_cols=69 Identities=6% Similarity=0.050 Sum_probs=55.3
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.....|.|=.+|..+|-.||..|+.++- |..++|+++..--++-...+.|.+.+.|+.-. ..|+..|..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g 112 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH 112 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC--CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence 4567899999999999999999999886 55899998543223557889999999999888 678877754
No 280
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=83.12 E-value=14 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
++...|.++.+.+...++.++++.. ....++.+|+.+++.++
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~----~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEK----KLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4445566666666666655555432 33345666666666554
No 281
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=82.73 E-value=2.4 Score=33.77 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=48.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
..+.|.|=.+|..+|-.||-.+++.+ ..|.+++|+++ ++-...+.|.+..+|+ ..+|..
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~----srGfaFV~F~~~~~A~----~~~~~~ 68 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP----FRAFAFVTFADDKVAQ----SLCGED 68 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS----CCSEEEEEESCHHHHH----HHTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC----CCCEEEEEECCHHHHH----HHcCCC
Confidence 46899999999999999999999877 45888999983 4568899999999998 356653
No 282
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.55 E-value=7.3 Score=33.49 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=51.6
Q ss_pred EEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
|.|-.+|..+|..+|-..++.| ..|..++|++. +.|..++.|.+...|..=....||..|..
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 4578899999999999988877 45888888763 24679999999999999999999998754
No 283
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=82.02 E-value=2.7 Score=37.32 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=52.8
Q ss_pred CcEEEEeccCCCCChhHHHHhhccc---cc-------ceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSH---ID-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~---~~-------~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
+..|.|-++|..+|-.||..|+..+ .. .|..+++.+. +-...+.|.+.+.|+... .+||..|..
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-----~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-----TTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-----CCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5789999999999999999999877 12 5777777652 346889999999999999 899987754
No 284
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.00 E-value=2.9 Score=35.84 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=51.7
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 130 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~ 130 (484)
.++.|.|=.+|..+|-.||..++++| ..|..++|+++ +-...+.|.+.+.|..-...+|+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 47899999999999999999998887 35888899984 347899999999999988887753
No 285
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.96 E-value=9.5 Score=30.84 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 011525 393 VNSKLIKNQEIMR 405 (484)
Q Consensus 393 ln~~L~~nq~~~~ 405 (484)
-|..|...+..|+
T Consensus 56 en~qLk~E~~~wq 68 (81)
T 2jee_A 56 ENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 286
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=81.88 E-value=7.7 Score=35.98 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 325 EAIVDEYNRLLATQLETQRQYYESLLAE 352 (484)
Q Consensus 325 e~~~~EY~~LLtsQLEsQR~yyE~~l~~ 352 (484)
..+..+++.+++.-++.-+.|.++.-.+
T Consensus 54 s~l~~el~~l~~e~~~~l~~~~~~l~~q 81 (191)
T 1nfn_A 54 SQVTQELRALMDETMKELKAYKSELEEQ 81 (191)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888888888888886654443
No 287
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=81.83 E-value=7.1 Score=32.25 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCcEEEEeccCCC-----CChhHHHHhhcccccceeEEEEEecCC--CCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNY-----LSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~-----~~~~d~l~F~~~~~~~i~~~riir~~~--~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+++|+|..+..- -+-.||...++.+ -.|.+++|+++.. ..++-.+.++|.+..+|..-....||+.|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~-G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY-GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG-SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc-CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3678888877631 1456777766544 4699999998532 1357889999999999999999999999975
No 288
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=81.21 E-value=0.83 Score=38.32 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=54.1
Q ss_pred CcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecC--CCCcceE-EEEEecChhcHHHHHhhhcCCcCCCC
Q 011525 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPA 135 (484)
Q Consensus 65 ~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~--~~pn~ym-vLikF~~~~~A~~f~~~~ng~~F~sl 135 (484)
+.-|.|=-+|..||-++|+.-+++..+ +.-.+++..+ .-|+.|+ +-|.|.+.++..+|.+.|+|..|-.-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~-~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA-HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS-EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc-cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 455778889999999999999998754 4556665533 1244444 67999999999999999999999553
No 289
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.72 E-value=55 Score=33.70 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=9.4
Q ss_pred HHHHHHHHhHHHHHHhHH
Q 011525 420 RLRDATILDLEEQIRDLT 437 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLm 437 (484)
.+.+.+|.+-.+.+.|+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 459 GEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhcccHHHHHH
Confidence 334445555555555554
No 290
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.15 E-value=2.9 Score=35.69 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=54.6
Q ss_pred CcEEEE--eccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcC-CCCc
Q 011525 65 STCIFV--VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF-SPAE 136 (484)
Q Consensus 65 ~~~l~i--l~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F-~sle 136 (484)
+..|.| -++|..+|-.||-.+++.|- .|..++|+. + +-...+.|.+..+|+.=....||+.+ +.+.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~~-~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-N----KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECCT-T----CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 567888 77999999999999988886 577777764 2 34678999999999999999999987 6654
No 291
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.79 E-value=9.3 Score=30.25 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.++.|.|-.. .+|-.||..++..+- .|..++|.+ ++-...+.|.+...|..-...+||..|..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G-~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTS-CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCC-CEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4678888883 899999999988774 578888864 23378999999999999999999988854
No 292
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.13 E-value=41 Score=43.63 Aligned_cols=21 Identities=0% Similarity=0.110 Sum_probs=13.5
Q ss_pred EEEeccCCCCChhHHHHhhcc
Q 011525 68 IFVVAVPNYLSSDEFVRFCGS 88 (484)
Q Consensus 68 l~il~vP~~~~~~d~l~F~~~ 88 (484)
+..+..-+..++.++.+.+..
T Consensus 1333 ~~~infS~~Tta~~l~~~~e~ 1353 (3245)
T 3vkg_A 1333 VVSLNFSSATTPELLLKTFDH 1353 (3245)
T ss_dssp EEEECCCTTCCHHHHHHHHHH
T ss_pred eEEEEeeCCCCHHHHHHHHhh
Confidence 445556667777777776643
No 293
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=78.00 E-value=5.4 Score=34.35 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=54.8
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccc----ccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSH----IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~----~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
....+|+|+.||-.++.+-+..|+.++ ...|..|-++- ..--+++.|.|...|..---..||..|..
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-----DH~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-----DFNGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-----TTTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-----CCCceEEEEccchhhHHHHhhcCCeeecC
Confidence 456899999999999999999999887 23565554333 33489999999999999999999998873
No 294
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=77.96 E-value=4.3 Score=37.44 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=59.3
Q ss_pred CCcEEEEeccCCCCChhHHHHhhcccccc-eeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCCC
Q 011525 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDH-VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (484)
Q Consensus 64 ~~~~l~il~vP~~~~~~d~l~F~~~~~~~-i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sl 135 (484)
.+..|.|-.+|..+|-.||-.+++++-.- +..++|+++.+ ..+-+..+.|.+.+.|..=...+||..++.-
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~-~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS-ERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS-SSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC-CCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 36789999999999999999998887543 38899988543 2347999999999999999999999988664
No 295
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.81 E-value=3.5 Score=34.98 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=51.8
Q ss_pred CCcEEEEeccCCC-CChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 64 ~~~~l~il~vP~~-~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
.++.|.|=.+|.. +|-.||..++.+|- .|..++|++. +-...+.|.+..+|..-...+|+..
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG-~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKA 86 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTS-CCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcC-CEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCC
Confidence 4789999999998 99999999888773 5888899873 3378999999999999988886643
No 296
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.48 E-value=8.7 Score=44.97 Aligned_cols=12 Identities=0% Similarity=0.360 Sum_probs=6.3
Q ss_pred CcEEEEeccCCC
Q 011525 65 STCIFVVAVPNY 76 (484)
Q Consensus 65 ~~~l~il~vP~~ 76 (484)
...|+||=+|-.
T Consensus 457 ~~~IgvLDi~GF 468 (1184)
T 1i84_S 457 ASFLGILDIAGF 468 (1184)
T ss_dssp CEEEEEEECCCC
T ss_pred cceEEEeecCCc
Confidence 445555555543
No 297
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.28 E-value=33 Score=28.61 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011525 337 TQLETQRQYYESLLAEAKSK 356 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~~~~~ 356 (484)
+||++|...++..+.++..+
T Consensus 15 ~~le~~~~~~~~e~~~L~~~ 34 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLRED 34 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 56778888888877777644
No 298
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.85 E-value=4.2 Score=34.09 Aligned_cols=64 Identities=20% Similarity=0.509 Sum_probs=37.6
Q ss_pred CCCCcCccccCCcCCCCCCceeecCCCccccccccccC------CccccccccccccCCCCccCCCCCCCc---eeeccc
Q 011525 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRFCHQQDERPTCSVCGTVEN---LWVCLI 235 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~------~~~CPvCR~~~~~~~~~~C~~C~~~~n---lWiCL~ 235 (484)
.+...|.||.+.-+.. .-+.=..|...||..|+.... ...||.|+ .|.+|+...+ +..|-.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~---------~C~~C~~~~~~~~ll~Cd~ 74 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK---------VCQNCKQSGEDSKMLVCDT 74 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC---------CCTTTCCCSCCTTEEECSS
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC---------cccccCccCCCCCeeECCC
Confidence 3567899998764421 112224778999999998542 34566664 3555555443 555544
Q ss_pred ccc
Q 011525 236 CGF 238 (484)
Q Consensus 236 CG~ 238 (484)
|+.
T Consensus 75 C~~ 77 (111)
T 2ysm_A 75 CDK 77 (111)
T ss_dssp SCC
T ss_pred CCc
Confidence 443
No 299
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.45 E-value=3.6 Score=34.80 Aligned_cols=64 Identities=27% Similarity=0.559 Sum_probs=38.4
Q ss_pred CCCCcCccccCCcC-----CCCCCceeecCCCcccccccccc---------CCccccccccccccCCCCccCCCCCC---
Q 011525 165 TELPTCPICLERLD-----PDTSGILSTICDHSFQCSCTAKW---------TVLSCQVCRFCHQQDERPTCSVCGTV--- 227 (484)
Q Consensus 165 ~e~ptCpICLe~l~-----~~~~givt~~C~H~Fh~~Cl~~w---------~~~~CPvCR~~~~~~~~~~C~~C~~~--- 227 (484)
+..+.|.+|+..=. .+..-+.=..|+..||..|+..+ ....||.|+. |.+|+..
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~---------C~vC~~~~~~ 73 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT---------CSSCRDQGKN 73 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC---------BTTTCCCCCT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc---------cccccCcCCC
Confidence 46788999986421 11111223478999999999532 2567888863 5566643
Q ss_pred -Cceeeccccc
Q 011525 228 -ENLWVCLICG 237 (484)
Q Consensus 228 -~nlWiCL~CG 237 (484)
+.+..|-.|.
T Consensus 74 ~~~ll~Cd~C~ 84 (112)
T 3v43_A 74 ADNMLFCDSCD 84 (112)
T ss_dssp TCCCEECTTTC
T ss_pred ccceEEcCCCC
Confidence 2455565444
No 300
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.43 E-value=3 Score=35.44 Aligned_cols=61 Identities=25% Similarity=0.550 Sum_probs=37.5
Q ss_pred CcCccccCCcC------CCCCCceeecCCCcccccccccc---------CCccccccccccccCCCCccCCCCCC---Cc
Q 011525 168 PTCPICLERLD------PDTSGILSTICDHSFQCSCTAKW---------TVLSCQVCRFCHQQDERPTCSVCGTV---EN 229 (484)
Q Consensus 168 ptCpICLe~l~------~~~~givt~~C~H~Fh~~Cl~~w---------~~~~CPvCR~~~~~~~~~~C~~C~~~---~n 229 (484)
+.|.+|+..-. ++..-|.=..|+.+||..|+..+ ....||.|+ .|.+|+.. ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------~C~~C~~~~~~~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK---------SCILCGTSENDDQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC---------CCTTTTCCTTTTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC---------ccCcccccCCCCc
Confidence 57899986431 11111223478899999999743 145788885 36677764 34
Q ss_pred eeeccccc
Q 011525 230 LWVCLICG 237 (484)
Q Consensus 230 lWiCL~CG 237 (484)
+..|-.|.
T Consensus 73 ll~Cd~C~ 80 (114)
T 2kwj_A 73 LLFCDDCD 80 (114)
T ss_dssp EEECSSSC
T ss_pred eEEcCCCC
Confidence 66665443
No 301
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=75.40 E-value=33 Score=30.50 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--ccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 338 QLETQRQYYESLLAEAKSKRES--LIPETVEK---AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~~~~~~--~~~~~~~~---~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e 412 (484)
.||++-.-.+++|..+..+... .+++...+ .+..|+.-++..|++.++.......-...|.......-+.++.++
T Consensus 42 ~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 42 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3666666677777666543221 11111111 233445555555555544444443434444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHH
Q 011525 413 EREITSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 413 ~~~~~~~~~~~~~i~eL~EQvrDLm 437 (484)
..... ..++-...+++|++|.
T Consensus 122 ~~eek----as~rE~~yee~I~~L~ 142 (147)
T 2b9c_A 122 DKVEE----LLSKNYHLENEVARLK 142 (147)
T ss_dssp HTTTT----HHHHHHHHHHHHTTSC
T ss_pred HhHHH----HHHHHHHHHHHHHHHH
Confidence 32211 1123345566666654
No 302
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.40 E-value=67 Score=32.87 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEE 385 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~ 385 (484)
+++++.++|..+.++++
T Consensus 402 ~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 33444444444444433
No 303
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.37 E-value=12 Score=33.02 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHh
Q 011525 418 SLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 418 ~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
.++.++.-+..|++|+.+|-.-
T Consensus 111 ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 111 QLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp TTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666788888888887543
No 304
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=75.05 E-value=40 Score=29.07 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011525 404 MRKKFKEIEEREITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 404 ~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvr 434 (484)
.+..+++|-.+.+..++..+.+|++.++-|-
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~ 99 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666655443
No 305
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.00 E-value=29 Score=27.36 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=4.8
Q ss_pred HHHHHHHHHhHH
Q 011525 419 LRLRDATILDLE 430 (484)
Q Consensus 419 ~~~~~~~i~eL~ 430 (484)
+...|-+|-||.
T Consensus 48 ~e~Ld~KI~eL~ 59 (72)
T 3cve_A 48 LEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH
Confidence 333344444443
No 306
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=73.57 E-value=35 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
+..+++..++++++.+++.-|
T Consensus 133 ~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 133 TLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344455667777777666543
No 307
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.44 E-value=14 Score=29.68 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 337 TQLETQRQYYESLLAEA 353 (484)
Q Consensus 337 sQLEsQR~yyE~~l~~~ 353 (484)
++|++|+..-..+|..+
T Consensus 2 ~~l~~e~e~~~~klq~~ 18 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDL 18 (79)
T ss_dssp --------CTTHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34555554444444443
No 308
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=72.92 E-value=2.3 Score=37.18 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhccccccee-EEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-ELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~-~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|=++|..+|-.||..++..+-.... .++-.++ + .++-...+.|.+...|+.-. .+||..|..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~-~-~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-G-TNRKFGYVDFESAEDLEKAL-ELTGLKVFG 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE-E-TTTTEEEEEESSHHHHHHHH-HGGGEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC-C-ccccEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 46789999999999999999988877632222 1222222 2 24557889999999999999 599987764
No 309
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=72.77 E-value=21 Score=32.00 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHhHHHhhhhHHHhhccCCCCCccCcEEe
Q 011525 422 RDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 461 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~leaq~ki~~~~~~~ei~~G~v~ 461 (484)
.++++.++.|+.+-|.|.++.=++|. -++||..|+|-
T Consensus 82 ~~~ek~~r~e~k~~l~~ql~qv~~L~---lGsEv~qg~vE 118 (150)
T 4dci_A 82 VAGKRSELEEQKRNLLQQQAQVRELE---MDQIVEQGQLE 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC---TTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CcCEEeeceee
Confidence 34566778888888888886666664 46789999884
No 310
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.56 E-value=13 Score=29.22 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 011525 340 ETQRQYYESL 349 (484)
Q Consensus 340 EsQR~yyE~~ 349 (484)
.+||.|-|-+
T Consensus 18 ~AQRafReRK 27 (70)
T 1gd2_E 18 AAQRAFRKRK 27 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3666665543
No 311
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.55 E-value=36 Score=27.43 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 411 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~ 411 (484)
++-|+-+++.|+++...+.+-++.++.+.+.+.....++
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 312
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.51 E-value=46 Score=29.24 Aligned_cols=14 Identities=0% Similarity=0.173 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEA 386 (484)
Q Consensus 373 ~~~l~~~l~kl~~e 386 (484)
...|+.+++.+.+|
T Consensus 77 ~~~L~~~l~~~~kE 90 (138)
T 3hnw_A 77 ADSLSLDIENKDKE 90 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 313
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=72.32 E-value=12 Score=31.49 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=51.7
Q ss_pred CCCcEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..++.|.|-.. .+|-.||..+++.+- .|..++|.+ ++-...+.|.+...|..-...+||..|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G-~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC-CCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC-CEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45788989883 699999999988774 467778864 23478899999999999999999998854
No 314
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=71.92 E-value=6.2 Score=32.55 Aligned_cols=69 Identities=12% Similarity=0.271 Sum_probs=50.1
Q ss_pred CcEEEEecc--CCCCCh--------hHHHHhhcccccceeEEEEEecCCC---CcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 65 STCIFVVAV--PNYLSS--------DEFVRFCGSHIDHVEELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 65 ~~~l~il~v--P~~~~~--------~d~l~F~~~~~~~i~~~riir~~~~---pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
+++|+|..+ |..+.- .||...++. .-.|.+++|.++... +.+-.+.++|.+..+|..-....||+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 678888877 444432 234333332 457999999985421 346789999999999999999999999
Q ss_pred CCC
Q 011525 132 FSP 134 (484)
Q Consensus 132 F~s 134 (484)
|+.
T Consensus 84 f~G 86 (105)
T 3v4m_A 84 FAN 86 (105)
T ss_dssp ETT
T ss_pred eCC
Confidence 975
No 315
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.86 E-value=79 Score=32.38 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 415 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~ 415 (484)
+-..+|+.++.-|++....--.--+.|+.+++.++.+|++||...
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554433211233568888888888888888654
No 316
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.66 E-value=30 Score=28.40 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 011525 386 AKKAVADVNSKLI 398 (484)
Q Consensus 386 e~~~l~~ln~~L~ 398 (484)
.-++|++-|+.|.
T Consensus 24 KVR~LEqqN~~Le 36 (93)
T 3s4r_A 24 KVRFLEQQNKILL 36 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 317
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.36 E-value=34 Score=30.76 Aligned_cols=46 Identities=7% Similarity=0.043 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 414 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~ 414 (484)
+...+..++.++..++++.+.-...++.|++....++-.+..+|++
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555444445555555555555554444443
No 318
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=70.93 E-value=8.1 Score=35.57 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCcEEEEeccC-CCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVP-NYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP-~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+++|.|=.+| ..+|..||..+++.+ ..|..++|+++. +-...+.|.+...|+.=...+||..|..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~-G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY-GNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT-SCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999999 799999999988765 578899999842 3368999999999999999999998865
No 319
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=70.93 E-value=39 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 379 ELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 379 ~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
++.....|.+.++.....|.+=+.++...+.+++.
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~ 53 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQ 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443
No 320
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=70.82 E-value=32 Score=32.50 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAK 387 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~ 387 (484)
..++..+++++-.++
T Consensus 155 ~~~l~~qlE~~v~~K 169 (213)
T 1ik9_A 155 WNDVQGRFEKAVSAK 169 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 321
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=70.10 E-value=70 Score=29.69 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.2
Q ss_pred HHhHHHHH
Q 011525 426 ILDLEEQI 433 (484)
Q Consensus 426 i~eL~EQv 433 (484)
+.|++--+
T Consensus 132 leD~e~kl 139 (189)
T 2v71_A 132 LEDFEQRL 139 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 322
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=69.38 E-value=45 Score=36.14 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=9.7
Q ss_pred HHHHHhHHHHHHhHHH
Q 011525 423 DATILDLEEQIRDLTV 438 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf 438 (484)
.+++..|+.||.||--
T Consensus 566 ~~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666667666643
No 323
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=68.78 E-value=7.5 Score=31.78 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCcccccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 201 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w 201 (484)
.....+..|+||----... -+.-..|+.+||-.|+.+-
T Consensus 10 e~~~~D~~C~VC~~~t~~~--l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAES--LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSC--CSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccc--eeccccccccccHhhcccc
Confidence 3455788999997433322 1122357899999999865
No 324
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=68.72 E-value=45 Score=27.83 Aligned_cols=49 Identities=6% Similarity=0.172 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREIT 417 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~ 417 (484)
+-...-+|+.+++++++|.+.++.+++........+..+++.|..+...
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 3445556777777777777766666655555555555555444444333
No 325
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=68.62 E-value=55 Score=27.92 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHHhh
Q 011525 372 KMQDIQNELDICEEAKKAVAD-VN---SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLT 447 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~-ln---~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ki~ 447 (484)
...+|+..|.++..+++++.+ ++ +.=.+.+..+..++...|..+..+.+...+-..+.++|+.-|++ .++.+.
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~---~Re~V~ 90 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ---SREQVS 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 334555555555555554432 11 11122233344444444444444444444556777888888887 445553
No 326
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=68.49 E-value=64 Score=28.63 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHhHHHhhhh
Q 011525 423 DATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~lea 442 (484)
..+|.+|+++|+.+.-.|-+
T Consensus 100 E~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 100 EGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45789999999988666543
No 327
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.24 E-value=57 Score=28.00 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=7.3
Q ss_pred HHHhHHHHHHhHHHhhh
Q 011525 425 TILDLEEQIRDLTVYIE 441 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~le 441 (484)
+|.+|.++|+|...-+|
T Consensus 79 EI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 328
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=67.98 E-value=38 Score=27.40 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKN 400 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~n 400 (484)
...+|...++.+++|...++++|+.|+.-
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555443
No 329
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.96 E-value=29 Score=29.07 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
.+..|..+++.|+.|...|++-.+.|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444433
No 330
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=67.88 E-value=56 Score=27.76 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=12.5
Q ss_pred HHHHHhHHHHHHhHHHh
Q 011525 423 DATILDLEEQIRDLTVY 439 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~ 439 (484)
..++.+|++||+-|.-.
T Consensus 89 ~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 35688888888877654
No 331
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.43 E-value=49 Score=26.88 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
++...|.++.+.+...++.++++. ...+.++.+|+.+++.+
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~----~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQE----ERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 444556666666666665555543 23334556666666543
No 332
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=67.23 E-value=32 Score=40.26 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=4.8
Q ss_pred cccCCcCCC
Q 011525 172 ICLERLDPD 180 (484)
Q Consensus 172 ICLe~l~~~ 180 (484)
.|++.++.|
T Consensus 522 ~~~~lie~~ 530 (1184)
T 1i84_S 522 PCIELIERP 530 (1184)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHhCC
Confidence 455555544
No 333
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.09 E-value=7.9 Score=40.01 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~ 408 (484)
++..++.+++.++++..++++..+.+....+.+..++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444444444444443
No 334
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=65.06 E-value=23 Score=30.66 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=52.8
Q ss_pred cEEEEeccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
..|.|-.+|..+|-.+|-..++.+ -.|..++|++. +..+-..+.|.+...|..=....||..|..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 335588999999999988887766 45777888873 246679999999999999999999998754
No 335
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.93 E-value=46 Score=34.12 Aligned_cols=73 Identities=11% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESL--IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~ 408 (484)
..-|+.|-+-|+..|++++...+.- ....+-.-+..-.+.+...+......-+.+.++++.|++.+..++++|
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777666433210 001111111111222233333333333444567777777777777765
No 336
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=64.72 E-value=16 Score=30.84 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=49.5
Q ss_pred CCcEEEEeccCCC--CC---hhHHHHhhcccccceeEEEEEecCCC-----CcceEEEEEecChhcHHHHHhhhcCCcCC
Q 011525 64 RSTCIFVVAVPNY--LS---SDEFVRFCGSHIDHVEELIFIRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (484)
Q Consensus 64 ~~~~l~il~vP~~--~~---~~d~l~F~~~~~~~i~~~riir~~~~-----pn~ymvLikF~~~~~A~~f~~~~ng~~F~ 133 (484)
.+++|+|..+-.- +. -.|+...++. .-.|.+++|+++... +.+--+.++|.+...|..-...+||+.|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678888887321 11 1334444443 468999999985321 23467899999999999999999999997
Q ss_pred C
Q 011525 134 P 134 (484)
Q Consensus 134 s 134 (484)
.
T Consensus 98 G 98 (118)
T 3ue2_A 98 G 98 (118)
T ss_dssp T
T ss_pred C
Confidence 6
No 337
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=64.20 E-value=11 Score=30.87 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=46.5
Q ss_pred ccCCCCChhHHHHhhc-----------ccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 72 AVPNYLSSDEFVRFCG-----------SHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 72 ~vP~~~~~~d~l~F~~-----------~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
++|..+|..+|-..+. .....|..++|.++.....+-.+.++|.+..+|..-....||+.|+.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4566666665543320 22457999999985433457789999999999999999999999875
No 338
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.76 E-value=19 Score=31.02 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=51.1
Q ss_pred CCcEEEEeccCCC-CChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecC-hhcHHHHHhhhc
Q 011525 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVD-QLTADEFYSNLN 128 (484)
Q Consensus 64 ~~~~l~il~vP~~-~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~-~~~A~~f~~~~n 128 (484)
.+.+|.|-++|.. .|-.||-.++..+ ..|..+.|++++. ...++|.+ ...|..+...+|
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhh
Confidence 5789999999999 9999999999875 4799999999543 48999999 789999999885
No 339
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.75 E-value=50 Score=30.99 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR 405 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~ 405 (484)
....+|...++.+++|...+++.|+.|+.-.++.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777765554443
No 340
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=63.33 E-value=79 Score=34.22 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNR 333 (484)
Q Consensus 321 ~~K~e~~~~EY~~ 333 (484)
...++.+..+|..
T Consensus 437 ~~~~~~~~~~Y~~ 449 (592)
T 1f5n_A 437 VQKLQDLKKKYYE 449 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666654
No 341
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=63.27 E-value=13 Score=35.76 Aligned_cols=64 Identities=8% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCCcEEEEeccCCCC---------ChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcC
Q 011525 63 SRSTCIFVVAVPNYL---------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (484)
Q Consensus 63 ~~~~~l~il~vP~~~---------~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F 132 (484)
..++.|.|-++|..+ |-.+|...++.| ..|..++|+++ +-.+.+.|.+..+|..-....||+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 457899999999988 567777777766 57889999973 44789999999999999999999998
No 342
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=63.12 E-value=96 Score=29.38 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEA 353 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~ 353 (484)
.+.|++-+..||...+...+|.=|.-.+-...++
T Consensus 93 ~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 93 VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4577888888888888888877665444333333
No 343
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=63.09 E-value=30 Score=36.65 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
+..+++..++++++.+++..|
T Consensus 121 ~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 121 AGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334445556666666655533
No 344
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.07 E-value=54 Score=25.88 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 011525 404 MRKKFKEIE 412 (484)
Q Consensus 404 ~~~~~~~~e 412 (484)
+.+++..+|
T Consensus 46 L~kKiq~lE 54 (81)
T 1ic2_A 46 LQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 345
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=62.89 E-value=58 Score=26.12 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLI 398 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~ 398 (484)
...+|..+++.+.++...+++.|+.|.
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666565553
No 346
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=62.46 E-value=37 Score=35.95 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
+..+++..++++++.+++.-|
T Consensus 88 ~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 88 KEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334455666777777766644
No 347
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.34 E-value=47 Score=34.70 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKN---QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n---q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
.+..+++.+++.|+.+++.+...-..+.++ .+.+..+++++.+ .++..+++..++++++.+++.-|
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVK----RIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555556666655555442211112111 1223333332222 23344456667777777776644
No 348
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=61.38 E-value=90 Score=27.84 Aligned_cols=70 Identities=7% Similarity=0.049 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
.+.+....|.+-...|+.|.+.=+.|.+.|..-....+..+.+.+.+..+. +.+-.++..++.+|+..|-
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leey-K~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEY-KQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555554444555555544444444444444333322 3344556666666665443
No 349
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.90 E-value=63 Score=25.89 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=3.9
Q ss_pred HHHHHHHHhH
Q 011525 420 RLRDATILDL 429 (484)
Q Consensus 420 ~~~~~~i~eL 429 (484)
...|-+|-||
T Consensus 55 e~Ld~KI~eL 64 (79)
T 3cvf_A 55 QLLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhHHHHH
Confidence 3333334443
No 350
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.56 E-value=80 Score=27.01 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVA----DVNSKLIKNQEIMRKKFKEIEEREITSLR 420 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~----~ln~~L~~nq~~~~~~~~~~e~~~~~~~~ 420 (484)
+...++.|+.+++.++..+..|+ ++..........++.++..+|........
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33455666666666555444332 22223333344555556666665544443
No 351
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.33 E-value=76 Score=26.66 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=5.1
Q ss_pred HHHHhHHHHHH
Q 011525 424 ATILDLEEQIR 434 (484)
Q Consensus 424 ~~i~eL~EQvr 434 (484)
.++..|++||+
T Consensus 72 ~~~~~lk~~L~ 82 (103)
T 4h22_A 72 FQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444554443
No 352
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=60.16 E-value=86 Score=31.47 Aligned_cols=92 Identities=10% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 342 QRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 421 (484)
Q Consensus 342 QR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~ 421 (484)
...||..+......+....+.+.+. .+...+++.+.+.+++..++..++ ..|..+...+......+.. .+..
T Consensus 102 f~syy~~L~~~~d~~d~~~l~~~L~-~L~~~i~~~q~~~~~~~~~L~~F~---~~l~~d~~~f~~~~~~l~~----~L~~ 173 (346)
T 2nrj_A 102 FDNYYETMVEAINTGDGETLKEGIT-DLRGEIQQNQKYAQQLIEELTKLR---DSIGHDVRAFGSNKELLQS----ILKN 173 (346)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHhhHHhHHHHHHH----HHhc
Confidence 4567887755554332222222222 333455555556655555554433 2555555555555544443 3444
Q ss_pred HHHHHHhHHHHHHhHHHhhh
Q 011525 422 RDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~le 441 (484)
....|.+|+.+|.++---+.
T Consensus 174 ~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 174 QGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp TTCCHHHHHHHHHHHTGGGC
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 44567777777777665554
No 353
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=60.13 E-value=1.3e+02 Score=29.22 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 011525 323 KVEAIVDEYNRLLATQLET 341 (484)
Q Consensus 323 K~e~~~~EY~~LLtsQLEs 341 (484)
|+.-+..+...-|...+|.
T Consensus 30 ~L~P~~~~l~~~l~~~le~ 48 (273)
T 3s84_A 30 RLLPHANEVSQKIGDNLRE 48 (273)
T ss_dssp HHGGGHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 354
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=59.83 E-value=7.7 Score=29.87 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=27.1
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCcccccccccc------CCcccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRF 211 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w------~~~~CPvCR~ 211 (484)
......|.||.+. . .-+.=-.|...||..|+... ....||.|..
T Consensus 9 ~~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 9 LAPGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 3455679999742 1 11222367899999999643 1356777654
No 355
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=59.58 E-value=25 Score=31.11 Aligned_cols=68 Identities=10% Similarity=-0.044 Sum_probs=51.3
Q ss_pred cEEEEecc----CCCCChhHHHHhhcccccceeEEEEEecCCC-CcceEEEEEecC----hhc----HHHHHh--hhcCC
Q 011525 66 TCIFVVAV----PNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVD----QLT----ADEFYS--NLNGK 130 (484)
Q Consensus 66 ~~l~il~v----P~~~~~~d~l~F~~~~~~~i~~~riir~~~~-pn~ymvLikF~~----~~~----A~~f~~--~~ng~ 130 (484)
+-|.|-++ |..+|-.+|-.|+++|= .|.+++++.+..+ -.+...+++|.| ... |..... ..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 45778888 99999999999998765 8999999985533 348899999996 333 666666 55787
Q ss_pred cCCC
Q 011525 131 RFSP 134 (484)
Q Consensus 131 ~F~s 134 (484)
.++.
T Consensus 82 ~I~G 85 (136)
T 2j8a_A 82 FIMG 85 (136)
T ss_dssp EETT
T ss_pred eecC
Confidence 7765
No 356
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.98 E-value=1e+02 Score=27.68 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 011525 406 KKFKEIEE 413 (484)
Q Consensus 406 ~~~~~~e~ 413 (484)
..+..+|.
T Consensus 105 k~id~lEd 112 (155)
T 2efr_A 105 KSIDDLED 112 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 357
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=58.82 E-value=1e+02 Score=27.78 Aligned_cols=7 Identities=29% Similarity=0.121 Sum_probs=4.6
Q ss_pred eeEeecc
Q 011525 268 QIWDYVG 274 (484)
Q Consensus 268 ~Vwcy~c 274 (484)
.+|+|.-
T Consensus 15 ~~w~Y~~ 21 (185)
T 3r2p_A 15 LATVYVD 21 (185)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 4677764
No 358
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=57.36 E-value=23 Score=29.69 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCcEEEEeccCCCCC------hhHHHHhhc-c--cccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCC
Q 011525 64 RSTCIFVVAVPNYLS------SDEFVRFCG-S--HIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (484)
Q Consensus 64 ~~~~l~il~vP~~~~------~~d~l~F~~-~--~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~s 134 (484)
.+++|+|..+=.-.. ..||..-+. . ....|.+++|.++. .+-.+.++|.+..+|..-....||+.|+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 367888877644333 233333221 1 24578899998843 25679999999999999999999999976
No 359
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=57.25 E-value=40 Score=34.85 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 370 ASKMQDIQNELDICEEAKKAVAD-VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~-ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
-.+..+++.+++.|+.+++.+.. +.+.--++.+.+..+++++.+ .++..+++..++++++.+++.-|
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGE----EAKRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566666666666554421 111000112223333322222 23334455666677776666543
No 360
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=57.14 E-value=6 Score=32.73 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 404 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~ 404 (484)
.|-+|+.|.|||-.+.+-. .... .....+....-.||.++.+|..+.+.++..|+.|.+-|+.-
T Consensus 13 ~sVie~ErIY~e~v~~~~~-~tg~----~~~~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtq 76 (95)
T 3n7n_E 13 KAKLDSERIYNEYVQSQYE-FASL----DKPKKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQ 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcCC-Cccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999998873221 0000 00112223334556666666666666666666665544433
No 361
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=56.99 E-value=44 Score=30.80 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHhHH
Q 011525 402 EIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 402 ~~~~~~~~~~e~~~~---~~~~~~~~~i~eL~EQvrDLm 437 (484)
..+-.+|..+|++.- ...+..+-+|.||..+|.||+
T Consensus 68 kELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 68 RQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 344444555554432 223344568999999999996
No 362
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.76 E-value=2e+02 Score=30.28 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 374 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 374 ~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
.+|+.++.-+++....--.--+.|+.+++.++.+|++||.....+
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443322211223456777777777777777654433
No 363
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.42 E-value=41 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=9.8
Q ss_pred HHHHHHHHHhHHHHHH
Q 011525 419 LRLRDATILDLEEQIR 434 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvr 434 (484)
+.+++++|.+|+.++.
T Consensus 49 L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 49 LDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666777766664
No 364
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=56.20 E-value=48 Score=23.87 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=4.3
Q ss_pred HHHHhHHHH
Q 011525 424 ATILDLEEQ 432 (484)
Q Consensus 424 ~~i~eL~EQ 432 (484)
+.|..|+.+
T Consensus 37 qRit~lE~~ 45 (46)
T 3swy_A 37 QRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 445555544
No 365
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.06 E-value=52 Score=26.05 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 397 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 397 L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
|..+.+.++.++..|-.+.........+.|..|+.+++.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344444444444333333333333556677776665
No 366
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=55.21 E-value=24 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.354 Sum_probs=41.2
Q ss_pred CCCCCCcCccccCCcCCCCCCceee---cCCCcccccccccc----CCccccccccccccCCCCccCCCCCCCceeeccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILST---ICDHSFQCSCTAKW----TVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLI 235 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~---~C~H~Fh~~Cl~~w----~~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~ 235 (484)
...+...|.+|.+- . .++.= .|...||..|+.-- +...||.| .|..|+...+ ..|..
T Consensus 11 ~~~~~~~C~~C~~~---G--~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c----------~C~~C~k~~~-~~C~~ 74 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---G--ELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWH----------QCDECSSAAV-SFCEF 74 (107)
T ss_dssp CCSSCSSCTTTCCC---S--EEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGG----------BCTTTCSBCC-EECSS
T ss_pred cCCCCCCCCcCCCC---C--cEeEECCCCCCcccccccCcCCcCCCCCEECCCC----------CCCcCCCCCC-cCcCC
Confidence 34567789999831 1 11211 36688999998721 14567777 2566665554 67888
Q ss_pred cccccccC
Q 011525 236 CGFVGCGR 243 (484)
Q Consensus 236 CG~vGCgr 243 (484)
|....|..
T Consensus 75 Cp~sfC~~ 82 (107)
T 4gne_A 75 CPHSFCKD 82 (107)
T ss_dssp SSCEECTT
T ss_pred CCcchhhh
Confidence 88888844
No 367
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.05 E-value=78 Score=25.18 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSL---RLRDATILDLEEQIR 434 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~---~~~~~~i~eL~EQvr 434 (484)
...|-.+-.+|..-+++|.-+...|.+..+++......+..+..... ...+.+|.+|+++++
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555556677777766655544444433222 223456777777765
No 368
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.91 E-value=82 Score=25.34 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=7.2
Q ss_pred HHHHhHHHHHHh
Q 011525 424 ATILDLEEQIRD 435 (484)
Q Consensus 424 ~~i~eL~EQvrD 435 (484)
.+++.|++++++
T Consensus 59 ~e~~~l~~~~ee 70 (81)
T 1wt6_A 59 AHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345666666666
No 369
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.83 E-value=98 Score=26.25 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 011525 345 YYESLLAEAKS 355 (484)
Q Consensus 345 yyE~~l~~~~~ 355 (484)
.||..|.++++
T Consensus 17 ~ye~~I~~LR~ 27 (119)
T 3ol1_A 17 LYEEEMRELRR 27 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555543
No 370
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=54.54 E-value=1.3e+02 Score=27.44 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=3.6
Q ss_pred hHHHhhhh
Q 011525 435 DLTVYIEA 442 (484)
Q Consensus 435 DLmf~lea 442 (484)
||+|-|-+
T Consensus 140 d~~~eLKa 147 (168)
T 3o0z_A 140 DLNYKLKS 147 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455543
No 371
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=54.29 E-value=12 Score=34.00 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCcCccccCCcCCCCCCceeecCCCcccccccccc------CCcccccccccc
Q 011525 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRFCH 213 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w------~~~~CPvCR~~~ 213 (484)
...|.||.+-= .-+.--.|...||..|+... +...||.|+...
T Consensus 4 ~~~C~~C~~~g----~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG----ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS----SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCC----eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45699998431 11222357889999998632 245688887643
No 372
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.47 E-value=51 Score=26.71 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=48.9
Q ss_pred CCCcEEEEeccCCCCC-----------hhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCc
Q 011525 63 SRSTCIFVVAVPNYLS-----------SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (484)
Q Consensus 63 ~~~~~l~il~vP~~~~-----------~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~ 131 (484)
..+.+|.|..+..... -.||..+++.+ ..|.++.| . +.. .+-.+.+.|.+...|..-...+||+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i-~-~~~-~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLL-F-DRH-PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEE-E-TTC-TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEE-e-cCC-CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3578899988843322 24666677655 35777755 4 222 45678999999999999999999998
Q ss_pred CCC
Q 011525 132 FSP 134 (484)
Q Consensus 132 F~s 134 (484)
|+.
T Consensus 89 ~~g 91 (112)
T 2dit_A 89 FGG 91 (112)
T ss_dssp ETT
T ss_pred ECC
Confidence 864
No 373
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.95 E-value=1e+02 Score=25.94 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHhH
Q 011525 421 LRDATILDLEEQIRDL 436 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDL 436 (484)
..+-+|+||..+|.||
T Consensus 74 kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 74 RKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHh
Confidence 3456899999999998
No 374
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=52.83 E-value=91 Score=32.80 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=11.2
Q ss_pred HHHHHHHhHHHHHHhHHHhh
Q 011525 421 LRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDLmf~l 440 (484)
....+|..|+..+..++...
T Consensus 179 ~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 179 SLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33455666666666655543
No 375
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=52.52 E-value=2.3e+02 Score=29.78 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHhHHHhhhhHH
Q 011525 420 RLRDATILDLEEQIRDLTVYIEAQK 444 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~leaq~ 444 (484)
......++.|.++|..|..-+..+.
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666665554443
No 376
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.85 E-value=3.8e+02 Score=34.99 Aligned_cols=7 Identities=43% Similarity=0.933 Sum_probs=3.9
Q ss_pred ccccccC
Q 011525 237 GFVGCGR 243 (484)
Q Consensus 237 G~vGCgr 243 (484)
|..|+||
T Consensus 1653 GvgGSGk 1659 (3245)
T 3vkg_A 1653 GVSGGGK 1659 (3245)
T ss_dssp ESTTSSH
T ss_pred cCCCCcH
Confidence 5555555
No 377
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.06 E-value=95 Score=24.97 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAV 390 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l 390 (484)
...+|+.+..++..+++.|
T Consensus 36 ~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554443
No 378
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.04 E-value=2e+02 Score=30.51 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 316 SGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE--SLIPETVEKAVASKMQDIQNELDICEEAKKAVADV 393 (484)
Q Consensus 316 ~~~~~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~--~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~l 393 (484)
+++-+..|+..++.|-..+-..--+.+.. ||.++++.+.+.+ ++-.+++++.-...-.+-++++.+-.+++.+.+.-
T Consensus 3 ~~a~yq~~la~yq~elarvqkana~aka~-Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 3 NEADYQAKLTAYQTELARVQKANADAKAA-YEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 394 NSKLIKNQEIMRKKFKEIEEREITSLRLRDA 424 (484)
Q Consensus 394 n~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~ 424 (484)
-..-...+..+.....+..+.+++..+-+.+
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ek~k~e 112 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELEKHKNE 112 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
No 379
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.71 E-value=51 Score=25.74 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
..+.+|+.++..++.+...+...|..|..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444433333333333
No 380
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=50.66 E-value=87 Score=24.41 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 435 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrD 435 (484)
..+|..+++.-++|...|.-+...|+....++..--+.||.+... -+..+.+|+..+.|
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~----~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLN----LQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHhhccc
Confidence 345555555555555555555566666555554444444443321 12345555554443
No 381
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=50.52 E-value=1.1e+02 Score=25.73 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=10.6
Q ss_pred HHHhHHHHHHhHHHhhhhH
Q 011525 425 TILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~leaq 443 (484)
.+..|+.++..|--.|..+
T Consensus 66 ~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 66 AHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777766654444443
No 382
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.00 E-value=86 Score=24.16 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAK 354 (484)
Q Consensus 322 ~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~ 354 (484)
.=+..|..+|..+...-.+.=-.+|..+++++.
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~ 41 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLS 41 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 335566677777776655555567777766655
No 383
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.51 E-value=21 Score=36.88 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 375 DIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 375 ~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
.|+.+++.++++++++++-++.+..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~ 31 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAA 31 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333
No 384
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=49.23 E-value=91 Score=24.43 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 011525 384 EEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 438 (484)
Q Consensus 384 ~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf 438 (484)
+.++..+.+-.+.|.+..+....++..+|..... .+.+...|...|.+++.
T Consensus 15 k~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~----~e~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 15 KLDKENALDRAEQAEADKDFYFGKLRNIELICQE----NEGENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHh
Confidence 3333333344445566566666676666553322 22334556666666654
No 385
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=49.22 E-value=40 Score=33.48 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 326 AIVDEYNRLLATQLETQRQYYESL 349 (484)
Q Consensus 326 ~~~~EY~~LLtsQLEsQR~yyE~~ 349 (484)
.+..+++.|++.-++.=-.|.+..
T Consensus 63 ~l~kel~~l~~~~~~el~~y~~~l 86 (307)
T 2l7b_A 63 QVTQELRALMDETMKELKAYKSEL 86 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666766666665555555443
No 386
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=49.03 E-value=33 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDICEEAKKAVA-----DVNSKLIKNQEIMRKKFKEIE 412 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~-----~ln~~L~~nq~~~~~~~~~~e 412 (484)
...++.|.++||++.....++. ++-..+.+..+.+.++|..+.
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888877665542 333344455555555444443
No 387
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=48.73 E-value=1e+02 Score=25.98 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHhHHH
Q 011525 422 RDATILDLEEQIRDLTV 438 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf 438 (484)
.+.+|.+|+-|+.|...
T Consensus 87 lq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 87 LETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567777777777643
No 388
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.71 E-value=1e+02 Score=24.62 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011525 390 VADVNSKLIKNQEIMRKKFK 409 (484)
Q Consensus 390 l~~ln~~L~~nq~~~~~~~~ 409 (484)
++++-..|..++..+.+.+.
T Consensus 44 L~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 389
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.62 E-value=65 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=11.0
Q ss_pred HHHHHHHHHhHHHHHHhHHHh
Q 011525 419 LRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLmf~ 439 (484)
++..+.++.+.++.|+.|--.
T Consensus 42 I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666655433
No 390
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.60 E-value=1.8e+02 Score=29.94 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHHHhHHHhh
Q 011525 422 RDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 422 ~~~~i~eL~EQvrDLmf~l 440 (484)
.+.+|.+|+++|..|+-.+
T Consensus 117 ~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 117 NSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3456777888887777544
No 391
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=48.52 E-value=10 Score=35.25 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=25.5
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCcccccccccc------CCccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRFC 212 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w------~~~~CPvCR~~ 212 (484)
....|.+|...-+ -+.--.|...||..|+... +...||.|+..
T Consensus 6 ~~~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGD----LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEE----EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCc----eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3456999974311 1122357789999998532 13567777653
No 392
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=48.38 E-value=18 Score=31.40 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=56.2
Q ss_pred cccceeecCCCccc-ccCC-CCceeeeeeeEEEccCCCCCcC----CCCCCCCcEEEEeccCCCCChhHHHHhhcccccc
Q 011525 19 EAGFCTVSSTATRS-RANP-NPKFSERRGLVHLFRGTSQSYQ----QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDH 92 (484)
Q Consensus 19 ~~~~~~~~s~~~~~-~~~g-np~v~~~~g~~hl~r~~~~~~~----~~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~ 92 (484)
|.+..-|...+.+= |..+ ++..+-+.|.|+|.+....+.. -...+...+++=..|...|++... +..-..
T Consensus 8 E~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~----~~~~~~ 83 (130)
T 3n7c_A 8 ENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPI----DADNEN 83 (130)
T ss_dssp --CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEES----CTTCTT
T ss_pred cCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEc----CCCCcc
Confidence 33344445555553 5444 5799999999999986531110 001123456666667777765521 100011
Q ss_pred eeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhc
Q 011525 93 VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLN 128 (484)
Q Consensus 93 i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~n 128 (484)
...+... .|+.| -..+|+|.+.+.|++|+..+.
T Consensus 84 ~v~~~~~-~dgk~--~~~~lrfks~e~A~~f~~~ie 116 (130)
T 3n7c_A 84 LIKWPII-TDGKL--ETFIIKVKQKADGRRLVGAVA 116 (130)
T ss_dssp EEEEEEE-ETTEE--EEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEec-CCCce--EEEEEEECCHHHHHHHHHHHH
Confidence 1112222 34434 357899999999999998874
No 393
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=48.29 E-value=59 Score=28.11 Aligned_cols=108 Identities=8% Similarity=-0.001 Sum_probs=61.6
Q ss_pred cccccccc-ceeecCCCccc-cc-CCCCceeeeeeeEEEccCCCCCcC---CCCCCCCcEEEEeccCCCCChhHHHHhhc
Q 011525 14 PITIEEAG-FCTVSSTATRS-RA-NPNPKFSERRGLVHLFRGTSQSYQ---QNPNSRSTCIFVVAVPNYLSSDEFVRFCG 87 (484)
Q Consensus 14 ~~~~~~~~-~~~~~s~~~~~-~~-~gnp~v~~~~g~~hl~r~~~~~~~---~~~~~~~~~l~il~vP~~~~~~d~l~F~~ 87 (484)
.+..+||+ .-.|...+.+= |. ..+...+-+.|.|||.+....... -...+...+++=..|-..|++..
T Consensus 13 ev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~------ 86 (134)
T 1rrp_B 13 EVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTP------ 86 (134)
T ss_dssp CCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBC------
T ss_pred eecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEee------
Confidence 34443333 55555556663 43 345689999999999986532211 00112344555556666676652
Q ss_pred ccccceeEEEEEec---CCCCcceEEEEEecChhcHHHHHhhhc
Q 011525 88 SHIDHVEELIFIRN---DAMEDRYSVLIKLVDQLTADEFYSNLN 128 (484)
Q Consensus 88 ~~~~~i~~~riir~---~~~pn~ymvLikF~~~~~A~~f~~~~n 128 (484)
....-..+++.-. +..+..-..+|+|.+.+.|++|...|.
T Consensus 87 -~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~ 129 (134)
T 1rrp_B 87 -NAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFE 129 (134)
T ss_dssp -STTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred -cCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 1111123333322 222345678999999999999999885
No 394
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.13 E-value=1.3e+02 Score=25.73 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=0.0
Q ss_pred ccchhhhHHHH
Q 011525 317 GALFNSKVEAI 327 (484)
Q Consensus 317 ~~~~~~K~e~~ 327 (484)
++++..|++.+
T Consensus 12 E~~y~~K~eel 22 (131)
T 3tnu_A 12 EEWFFTKTEEL 22 (131)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 395
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=47.80 E-value=7.2 Score=29.75 Aligned_cols=36 Identities=25% Similarity=0.644 Sum_probs=22.8
Q ss_pred CCCCcCccccC-CcCCCCCCceeecCCCcccccccccc
Q 011525 165 TELPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAKW 201 (484)
Q Consensus 165 ~e~ptCpICLe-~l~~~~~givt~~C~H~Fh~~Cl~~w 201 (484)
.+.++|+||+. .|.+. .|-.-.-|.-.||..|--+|
T Consensus 7 ~d~~~C~iC~KTKFADG-~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG-CGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSCCCSS-CCEEBTTTCCEECTTSEEEE
T ss_pred CCcchhhhhccceeccC-CCccccccCCeeecccCCEe
Confidence 46789999986 55544 44454556666666665444
No 396
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.69 E-value=1.4e+02 Score=25.62 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=8.6
Q ss_pred HHHHhHHHHHHhHHHhh
Q 011525 424 ATILDLEEQIRDLTVYI 440 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~l 440 (484)
++++.|+-+..+|-..|
T Consensus 92 ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 92 AEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhhHh
Confidence 44555555555554443
No 397
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=46.54 E-value=1.6e+02 Score=26.30 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLL 335 (484)
Q Consensus 321 ~~K~e~~~~EY~~LL 335 (484)
.+|+.++..++..+.
T Consensus 5 ~~~~~~l~~~~~~~~ 19 (284)
T 1c1g_A 5 KKKMQMLKLDKENAL 19 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 456666666665543
No 398
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.38 E-value=24 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
+....+.|+.|-+.+... ....-+..||..|. .|..|+.
T Consensus 11 ~~~~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF------~C~~C~~ 49 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGV----FVKLRDRHRHPECY------VCTDCGT 49 (79)
T ss_dssp CCCCCCCCSSSCCCCCSS----CEECSSCEECTTTT------SCSSSCC
T ss_pred CCCCCCccccCCCCccCc----EEEECcceeCcCcC------eeCCCCC
Confidence 456789999999988753 33455788998885 5777765
No 399
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.35 E-value=64 Score=25.57 Aligned_cols=17 Identities=29% Similarity=0.085 Sum_probs=10.1
Q ss_pred HHHHhHHHHHHhHHHhh
Q 011525 424 ATILDLEEQIRDLTVYI 440 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~l 440 (484)
.+|..|+.|++-|.--|
T Consensus 42 ~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 42 LTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666665444
No 400
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.24 E-value=1.4e+02 Score=25.56 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 404 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~ 404 (484)
|...++..|..+|....+.... + ..+..++..|+.+|+.-...++....-|+.|+...+.+
T Consensus 20 Lkreie~lk~ele~l~~E~q~~--------v-~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRV--------V-LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777776665421 1 13445666667666665555555555566666655554
No 401
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=46.15 E-value=1.1e+02 Score=24.56 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011525 338 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIMRKK 407 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~-~ln~~L~~nq~~~~~~ 407 (484)
.|.+|+...|..|.+++...+ ..++.++..+..++.++..++ ++.+.+++.|+-+..|
T Consensus 7 ~L~~q~~~Le~~l~e~E~~~~------------~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK 65 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDSLA------------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIK 65 (86)
T ss_dssp -----CTTHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777776664332 233444444544444444432 3444455555444443
No 402
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.70 E-value=1.1e+02 Score=24.52 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 011525 393 VNSKLIK 399 (484)
Q Consensus 393 ln~~L~~ 399 (484)
-|+.|..
T Consensus 53 rn~eL~~ 59 (81)
T 1wt6_A 53 RNRDLEA 59 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 403
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=45.64 E-value=43 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.6
Q ss_pred HHHHHHHhHHHHHHhH
Q 011525 421 LRDATILDLEEQIRDL 436 (484)
Q Consensus 421 ~~~~~i~eL~EQvrDL 436 (484)
..+-+|.||..+|.||
T Consensus 74 kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 74 QQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHh
Confidence 3456899999999999
No 404
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.18 E-value=1.3e+02 Score=24.84 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHh
Q 011525 376 IQNELDICEEAKKAVA---DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 376 l~~~l~kl~~e~~~l~---~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~ 439 (484)
-+..+++++++....+ +-..-|....+.++..+.. +|. .......++++|++|++-|.-.
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a--ERa--dREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA--ERH--AREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHTTSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHhHHHHHHHHHHHHHHH
Confidence 3445555554433222 3333455555555554422 111 1122335678889888877654
No 405
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.02 E-value=16 Score=28.24 Aligned_cols=26 Identities=27% Similarity=0.722 Sum_probs=19.6
Q ss_pred CCCccCCCCCCCce--eeccccccccccC
Q 011525 217 ERPTCSVCGTVENL--WVCLICGFVGCGR 243 (484)
Q Consensus 217 ~~~~C~~C~~~~nl--WiCL~CG~vGCgr 243 (484)
...+|..|.....+ +.| -||...|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 34678888876544 689 799999974
No 406
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.80 E-value=1.7e+02 Score=26.16 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHhHHHhhhhH
Q 011525 424 ATILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~leaq 443 (484)
.++..|++|+.|-..-|+..
T Consensus 115 ~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666667776665555553
No 407
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=44.54 E-value=63 Score=32.52 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=59.1
Q ss_pred CcEEEE--eccCCCCChhHHHHhhcccccceeEEEEEecCCCCcceEEEEEecChhcHHHHHhhhcCCcCCCCccc--ce
Q 011525 65 STCIFV--VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAE--VC 140 (484)
Q Consensus 65 ~~~l~i--l~vP~~~~~~d~l~F~~~~~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~~~ng~~F~sle~e--~C 140 (484)
+..|.| ++++..+|-.||...++++ -.|..++|.+ ++-...+.|.+.+.|..-....||+.+-..... +=
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~-G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTT-SCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 566777 6678899999999999887 3566777765 234778899999999999999999977221111 22
Q ss_pred eeEEEeEEEEee
Q 011525 141 HMLFMLSVEYTE 152 (484)
Q Consensus 141 ~~v~v~~v~~~~ 152 (484)
++.|+..+.+..
T Consensus 92 y~~~~~~~~~~~ 103 (345)
T 3tht_A 92 YLNFVEKVQWKE 103 (345)
T ss_dssp EEEECSSEEEEE
T ss_pred EEEEeecccccc
Confidence 456666666544
No 408
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.39 E-value=13 Score=29.00 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=20.9
Q ss_pred CCCccCCCCCCCce-----eeccccccccccC
Q 011525 217 ERPTCSVCGTVENL-----WVCLICGFVGCGR 243 (484)
Q Consensus 217 ~~~~C~~C~~~~nl-----WiCL~CG~vGCgr 243 (484)
...+|..|.....| +.| -||.+.|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 35688889888766 589 899999974
No 409
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=43.32 E-value=2.4e+02 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 011525 321 NSKVEAIVDEYNRLLATQLETQRQ 344 (484)
Q Consensus 321 ~~K~e~~~~EY~~LLtsQLEsQR~ 344 (484)
..+++-+..|+-..+...+|.=|.
T Consensus 50 r~~L~Py~~el~~~~~~~~eelr~ 73 (273)
T 3s84_A 50 QQRLEPYADQLRTQVNTQAEQLRR 73 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455666666666666666655443
No 410
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=43.13 E-value=1.3e+02 Score=27.23 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 392 DVNSKLIKNQEIMRKKFK 409 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~ 409 (484)
++...+..|.+.++.++.
T Consensus 104 e~~~~~~~~~e~lr~~l~ 121 (185)
T 3r2p_A 104 DFQKKWQEEMELYRQKVE 121 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444445555555555543
No 411
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=43.08 E-value=5.6 Score=45.01 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=28.1
Q ss_pred CCceeeccccccccccCCCCCccccccCCCCCceeee
Q 011525 227 VENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLD 263 (484)
Q Consensus 227 ~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~~l~ 263 (484)
...|.|||.|-.-+| ..|+..|+..++|++.+.
T Consensus 59 ~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~ 91 (854)
T 3ihp_A 59 EGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLH 91 (854)
T ss_dssp TTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEE
T ss_pred CCCeEEccccccccc----HHHHHHHHhccCCceEEE
Confidence 347999999988888 479999999999998774
No 412
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=42.79 E-value=1.6e+02 Score=25.16 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHhHHHhhh
Q 011525 392 DVNSKLIKNQEIMRKKFKEIEEREITSL---RLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 392 ~ln~~L~~nq~~~~~~~~~~e~~~~~~~---~~~~~~i~eL~EQvrDLmf~le 441 (484)
++...|.+....+..++++++++..... .........|++++.||--.|+
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332211 1222344555666666655444
No 413
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.56 E-value=1.4e+02 Score=27.21 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=17.3
Q ss_pred HHHHHHHHhHHHHHHhHHHhhhhHHHhhc
Q 011525 420 RLRDATILDLEEQIRDLTVYIEAQKTLTN 448 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~leaq~ki~~ 448 (484)
+...++|.+|+.|+++..+- .+.++.+
T Consensus 116 ~aL~~Ei~~Lr~qL~~~R~k--~~~em~K 142 (175)
T 3lay_A 116 NAVAKEMESLGQKLDEQRVK--RDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 34446788888888887653 3445544
No 414
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.47 E-value=1.3e+02 Score=24.16 Aligned_cols=17 Identities=6% Similarity=0.210 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHHhHHHh
Q 011525 423 DATILDLEEQIRDLTVY 439 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf~ 439 (484)
+.++..+++++.++.-.
T Consensus 85 e~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 85 ERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554433
No 415
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.38 E-value=1.4e+02 Score=24.39 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHHhHHH
Q 011525 423 DATILDLEEQIRDLTV 438 (484)
Q Consensus 423 ~~~i~eL~EQvrDLmf 438 (484)
+.++..|+.+++|++-
T Consensus 91 ~~~~~~l~~~~~~~~~ 106 (112)
T 1l8d_A 91 ERELRRIDMEIKRLTP 106 (112)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666665543
No 416
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.36 E-value=1.5e+02 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=11.4
Q ss_pred HHHHHHhHHHHHHhH
Q 011525 422 RDATILDLEEQIRDL 436 (484)
Q Consensus 422 ~~~~i~eL~EQvrDL 436 (484)
.+.++..|++||.|-
T Consensus 81 ~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 81 IEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 345788899999884
No 417
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=42.10 E-value=14 Score=29.88 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=24.6
Q ss_pred CCCCCcCccccCCcCCCCCCceeecC--CCccccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTIC--DHSFQCSCTAK 200 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C--~H~Fh~~Cl~~ 200 (484)
......|.+|.|+|++. ..+.-|- .|.||-.|-..
T Consensus 12 ~~a~l~CtlC~erLEdt--HFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT--HFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCSCCCSSSCSCCSST--TSEECSSCSSCEECHHHHHH
T ss_pred CCCeeEeecchhhhccC--ceeeCCCccCCeeeccccHH
Confidence 35677999999999975 3333221 69999888653
No 418
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.01 E-value=59 Score=32.60 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHhHHHhh
Q 011525 424 ATILDLEEQIRDLTVYI 440 (484)
Q Consensus 424 ~~i~eL~EQvrDLmf~l 440 (484)
.+|.+|+++|.+|+-.+
T Consensus 40 ~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666544
No 419
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.54 E-value=1.4e+02 Score=24.04 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHH
Q 011525 417 TSLRLRDATILDLEEQI 433 (484)
Q Consensus 417 ~~~~~~~~~i~eL~EQv 433 (484)
.++..++.+|..|++|+
T Consensus 61 ~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 61 EQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 34556677788888776
No 420
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.42 E-value=1.3e+02 Score=23.82 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011525 338 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIMRKK 407 (484)
Q Consensus 338 QLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~-~ln~~L~~nq~~~~~~ 407 (484)
-|.+|+...|..|.+++...+. .+..++..+..++.++..++ ++.+.+++.|+-+..|
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~------------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK 63 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAV------------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 63 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777788877777654432 33344444444444444432 3444455555554444
No 421
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.97 E-value=1.2e+02 Score=23.28 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011525 335 LATQLETQRQYYESLLAEAKS 355 (484)
Q Consensus 335 LtsQLEsQR~yyE~~l~~~~~ 355 (484)
|++-|..=|.-||++..+-.+
T Consensus 7 L~~il~eiRaQYE~ia~knr~ 27 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQ 27 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 345556666677766665543
No 422
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.91 E-value=20 Score=27.69 Aligned_cols=26 Identities=35% Similarity=0.881 Sum_probs=19.2
Q ss_pred CCCccCCCCCCCce--eeccccccccccC
Q 011525 217 ERPTCSVCGTVENL--WVCLICGFVGCGR 243 (484)
Q Consensus 217 ~~~~C~~C~~~~nl--WiCL~CG~vGCgr 243 (484)
...+|..|.....+ +.| -||...|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 34678888776544 689 699999974
No 423
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=40.78 E-value=13 Score=34.30 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=21.6
Q ss_pred cCccccCCcCCCCCCceee---cCCCcccccccc
Q 011525 169 TCPICLERLDPDTSGILST---ICDHSFQCSCTA 199 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~---~C~H~Fh~~Cl~ 199 (484)
.||||...++++..+...+ .|..=||..|+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccc
Confidence 5999998888764222233 466778888875
No 424
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.33 E-value=1.4e+02 Score=24.00 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
...+|...++.+.+|...+++.|+.|..
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555555555543
No 425
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.18 E-value=1.3e+02 Score=23.89 Aligned_cols=17 Identities=0% Similarity=0.032 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011525 402 EIMRKKFKEIEEREITS 418 (484)
Q Consensus 402 ~~~~~~~~~~e~~~~~~ 418 (484)
..++..+..+|......
T Consensus 29 ~~~q~~i~~lE~eL~~~ 45 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNM 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544333
No 426
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.08 E-value=89 Score=22.91 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 394 NSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 394 n~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
.+.|+.....+..+...|.+ .++.-.++|..|++||.+|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~----~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLME----TLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
No 427
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.04 E-value=1.5e+02 Score=24.19 Aligned_cols=13 Identities=15% Similarity=0.606 Sum_probs=6.4
Q ss_pred HHHhHHHHHHhHH
Q 011525 425 TILDLEEQIRDLT 437 (484)
Q Consensus 425 ~i~eL~EQvrDLm 437 (484)
+..++++++..|.
T Consensus 68 ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 68 QQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555553
No 428
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=39.69 E-value=1.3e+02 Score=24.90 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE---REITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~---~~~~~~~~~~~~i~eL~EQvr 434 (484)
+...++||...+.-...-.-..-.....|-.|..++-+... +....+....+.|..|+.||.
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555554433222222222334445555555433222 222233334455666666653
No 429
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=39.53 E-value=57 Score=28.07 Aligned_cols=101 Identities=7% Similarity=-0.026 Sum_probs=57.4
Q ss_pred ceeecCCCccc-ccC-CCCceeeeeeeEEEccCCCCCcC---CCCCCCCcEEEEeccCCCCChhHHHHhhcccccceeEE
Q 011525 22 FCTVSSTATRS-RAN-PNPKFSERRGLVHLFRGTSQSYQ---QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96 (484)
Q Consensus 22 ~~~~~s~~~~~-~~~-gnp~v~~~~g~~hl~r~~~~~~~---~~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~~ 96 (484)
.-.|...+.+= |.. .+...|-+.|.|||.+....... -...+...+++=..|...|.+.. ....-..+
T Consensus 8 ~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~-------~~~s~~~~ 80 (130)
T 1xke_A 8 KVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKP-------LSGSDRAW 80 (130)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEE-------CTTCSSCE
T ss_pred EEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEee-------cCCCCeEE
Confidence 33444445553 332 35689999999999987533211 00011235566566777777642 11111122
Q ss_pred EEEec---CCCCcceEEEEEecChhcHHHHHhhhcC
Q 011525 97 IFIRN---DAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (484)
Q Consensus 97 riir~---~~~pn~ymvLikF~~~~~A~~f~~~~ng 129 (484)
.+.-. ++.+..-..+|+|.+.+.|++|+..|.-
T Consensus 81 ~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee 116 (130)
T 1xke_A 81 MWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 116 (130)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 22211 2223455789999999999999998853
No 430
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.49 E-value=1.7e+02 Score=24.62 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 372 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 372 k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
.+.+.+.++..|..+.+.++..-+.|.+..+....|+.++|-
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554445555555555555555553
No 431
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=39.02 E-value=18 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCCcCccccCCcCCCCCCce-eecCCCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGIL-STICDHSFQCSCTA 199 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~giv-t~~C~H~Fh~~Cl~ 199 (484)
.+...|.||....+.....++ =-.|+..||..|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC
Confidence 456789999976443212122 23678899999976
No 432
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=39.02 E-value=1.3e+02 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHhHHHh
Q 011525 420 RLRDATILDLEEQIRDLTVY 439 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~ 439 (484)
......+..|..-+.+++-|
T Consensus 94 ~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 94 ESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33445666777777776655
No 433
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.22 E-value=2.9e+02 Score=29.02 Aligned_cols=107 Identities=9% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 336 ATQLETQRQYYESLLAEAKSKRESL--IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 413 (484)
Q Consensus 336 tsQLEsQR~yyE~~l~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~ 413 (484)
..-|..|.+-|-..|++++.....- ....+-.-+..-.+.+...+......-+.+.++++.|+..+..++.+|..--.
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~ 132 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVN 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777887777776533210 00111111112222233333334444445567777888888888877643222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHHh
Q 011525 414 REITSLRLRDATILDLEEQIRDLTVYIEAQKTL 446 (484)
Q Consensus 414 ~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~ki 446 (484)
.++.++.-|+++...|+-|-.-|.+|-..
T Consensus 133 ----~IrvLq~~l~~q~skIQRLE~dI~~q~~~ 161 (491)
T 1m1j_A 133 ----RIKALQNSIQEQVVEMKRLEVDIDIKIRA 161 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445666666666666666666543
No 434
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=38.16 E-value=83 Score=23.01 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 369 VASKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 369 ~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
++...++|+..+++|+.++...++-++.+.+
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456677788888887776555554444444
No 435
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=37.86 E-value=1.9e+02 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 011525 407 KFKEIEEREITSLRLRDATILDLEE 431 (484)
Q Consensus 407 ~~~~~e~~~~~~~~~~~~~i~eL~E 431 (484)
.+..+-...+..++.++.+|...++
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qek 96 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKA 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 436
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.76 E-value=1.5e+02 Score=31.26 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHhHHHhhh
Q 011525 420 RLRDATILDLEEQIRDLTVYIE 441 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~le 441 (484)
+...++|.+|+++++++.--|.
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888888888876654
No 437
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.25 E-value=24 Score=27.97 Aligned_cols=25 Identities=28% Similarity=0.764 Sum_probs=18.6
Q ss_pred CCccCCCCCCCce--eeccccccccccC
Q 011525 218 RPTCSVCGTVENL--WVCLICGFVGCGR 243 (484)
Q Consensus 218 ~~~C~~C~~~~nl--WiCL~CG~vGCgr 243 (484)
..+|..|.....+ +.| -||...|+.
T Consensus 25 ~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred CccchhhcCcccccceEe-ccCCEeccc
Confidence 4567777766543 789 799999974
No 438
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.20 E-value=1.5e+02 Score=23.26 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=6.4
Q ss_pred HHHHhHHHHHHh
Q 011525 424 ATILDLEEQIRD 435 (484)
Q Consensus 424 ~~i~eL~EQvrD 435 (484)
.++.||...+.-
T Consensus 56 ~eL~elrq~Lak 67 (72)
T 3cve_A 56 FELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345566655543
No 439
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.18 E-value=2e+02 Score=24.63 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHhH
Q 011525 401 QEIMRKKFKEIEEREITSLRLRDA---TILDLEEQIRDL 436 (484)
Q Consensus 401 q~~~~~~~~~~e~~~~~~~~~~~~---~i~eL~EQvrDL 436 (484)
+..++.++.+||.++......+++ +.+.|+.++.++
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666665544433322 334444444443
No 440
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=37.14 E-value=1.7e+02 Score=26.37 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhH-HHh-hccCCCCCccCcEE
Q 011525 405 RKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ-KTL-TNMTDSDGIKGGTV 460 (484)
Q Consensus 405 ~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq-~ki-~~~~~~~ei~~G~v 460 (484)
...+..+.++.+...+....+|+.|+..|.. |.++. ..+ .+ .-+-++--|+|
T Consensus 40 n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~---y~e~~r~elf~k-~Kt~~l~~G~v 93 (171)
T 2p2u_A 40 NEAIDAAKARASQKSAPLLARRKELEDGVAT---FATLNKTEMFKD-RKSLDLGFGTI 93 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHCC----CCBCSSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHhcCC-CeEEEeCCEEE
Confidence 3344444455544555555666677766553 33333 333 21 11235666776
No 441
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=37.06 E-value=37 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.507 Sum_probs=19.8
Q ss_pred CCCcCccccCCcCCCCCCceeecCCCccccccccc
Q 011525 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (484)
Q Consensus 166 e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~ 200 (484)
....|.||.+.- . -+.--.|...||..|+..
T Consensus 8 ~~~~C~vC~~~g--~--ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKDGG--E--LLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCCCS--S--CBCCSSSCCCBCSSSSSS
T ss_pred CCCcCCCCCCCC--C--EEEcCCCCHHHcccccCC
Confidence 456799998521 1 112235788999999873
No 442
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.00 E-value=1.3e+02 Score=22.51 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 377 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 377 ~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
+.+...+++.+.+...=-..=.+....+..+++.|+.+...+.. +|..|++++..|...|.+
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~----ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQT----EIANLLKEKEKLEFILAA 62 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
No 443
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.92 E-value=1.7e+02 Score=27.13 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 375 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 408 (484)
Q Consensus 375 ~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~ 408 (484)
+|+.+...|..++......++.|++....++++.
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333333333333333444333443333
No 444
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.63 E-value=22 Score=26.52 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=21.1
Q ss_pred CCCCcCccccCCcCCCCCCceee---cCCCcccccccc
Q 011525 165 TELPTCPICLERLDPDTSGILST---ICDHSFQCSCTA 199 (484)
Q Consensus 165 ~e~ptCpICLe~l~~~~~givt~---~C~H~Fh~~Cl~ 199 (484)
.+...||+|....++.. ..+ .|..=||..|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~---~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADE---FWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSS---CEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCC---CEEEccCCCCCCCccccC
Confidence 35668999998775431 233 456668888875
No 445
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.25 E-value=35 Score=26.47 Aligned_cols=45 Identities=24% Similarity=0.495 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccc
Q 011525 158 STPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 158 ~~~~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
...+......+.|+.|-..+.+.. ....-+..||..|. .|..|+.
T Consensus 6 ~~~~~~~~~~~~C~~C~~~I~~~~---~v~a~~~~wH~~CF------~C~~C~~ 50 (80)
T 2dj7_A 6 SGKPIKIRGPSHCAGCKEEIKHGQ---SLLALDKQWHVSCF------KCQTCSV 50 (80)
T ss_dssp CCCCCCCSSCSCCTTTCCCCSSSC---CEEETTEEECTTTC------BCSSSCC
T ss_pred CCCCcCCCCCCCCcCcCCeeCCCe---EEEECCcccccccC------CcCcCCC
Confidence 345556677899999999886431 22334678888775 6777765
No 446
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=36.00 E-value=1.5e+02 Score=24.20 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=13.9
Q ss_pred HHhHHHHHHhHHHhhhh
Q 011525 426 ILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 426 i~eL~EQvrDLmf~lea 442 (484)
..++++.+-|++|++-.
T Consensus 60 ~~~i~eELgDvLf~lv~ 76 (95)
T 1vmg_A 60 LDSIQEELADVIAWTVS 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999999854
No 447
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.75 E-value=23 Score=28.89 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCCCCCCcCccccCCcCCCCCCceeecCCCcccccccc
Q 011525 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (484)
Q Consensus 162 ~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~ 199 (484)
....+...|.||...-+.. .-+.=-.|...||..|+.
T Consensus 11 ~~~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSS
T ss_pred hhccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCC
Confidence 3445677899998765432 111222567889988875
No 448
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.70 E-value=43 Score=34.61 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHhHHHhh
Q 011525 420 RLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 420 ~~~~~~i~eL~EQvrDLmf~l 440 (484)
+..+++..++++++.+++..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 85 DRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344456677777777777654
No 449
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.48 E-value=93 Score=26.04 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-------HhhhhHHHhhccCCCCCccCcEEeecCCCC
Q 011525 395 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT-------VYIEAQKTLTNMTDSDGIKGGTVLPVSYQQ 467 (484)
Q Consensus 395 ~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLm-------f~leaq~ki~~~~~~~ei~~G~v~~~~~~~ 467 (484)
+.+...+..++..+..|++++ +..|+.|..++++++.|. +..=+.+-|...+. .++-||+++-+++
T Consensus 2 ~~~~~~~~~Lk~El~~L~~~E----~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~---f~~qtviaIkAP~ 74 (106)
T 2aze_B 2 SHMGGRLEGLTQDLRQLQESE----QQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIAD---PAEQMVMVIKAPP 74 (106)
T ss_dssp ----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSC---TTTEEEEEEECCT
T ss_pred cchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcC---CCcCeEEEEECCC
Q ss_pred CC
Q 011525 468 SS 469 (484)
Q Consensus 468 ~~ 469 (484)
.+
T Consensus 75 gT 76 (106)
T 2aze_B 75 ET 76 (106)
T ss_dssp TC
T ss_pred CC
No 450
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.30 E-value=50 Score=22.55 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHHHHHhHH
Q 011525 419 LRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvrDLm 437 (484)
+..||++|..|++...+|+
T Consensus 16 ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4456667777777666664
No 451
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=35.23 E-value=51 Score=26.18 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDIC 383 (484)
Q Consensus 371 ~k~~~l~~~l~kl 383 (484)
.+++.||.+|+..
T Consensus 19 ~kv~~LQ~eLdts 31 (79)
T 1tu3_F 19 NKAQRLQTELDVS 31 (79)
T ss_dssp --CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
No 452
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.95 E-value=1.1e+02 Score=24.57 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHH
Q 011525 396 KLIKNQEIMRKKFKEIEEREIT---SLRLRDATILDLEEQI 433 (484)
Q Consensus 396 ~L~~nq~~~~~~~~~~e~~~~~---~~~~~~~~i~eL~EQv 433 (484)
+|......++-++.++|.+.-. .++...+++.-|++|+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444433211 1222224555566554
No 453
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.94 E-value=94 Score=31.13 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 011525 371 SKMQDIQNELDICEE 385 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~ 385 (484)
++.++|.+++.+++.
T Consensus 5 ~~~~~~~~~~~~~e~ 19 (323)
T 1lwu_C 5 KTVQKILEEVRILEQ 19 (323)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555554443
No 454
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.54 E-value=70 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 370 ASKMQDIQNELDICEEAK 387 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~ 387 (484)
++++..|+.+++.+++.+
T Consensus 7 ekkcaalesklqalekkl 24 (31)
T 3ljm_A 7 EKKCAALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555444443
No 455
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.48 E-value=1.8e+02 Score=30.16 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHhHHHhh
Q 011525 385 EAKKAVADVNSKLIKNQEIMRKKFKEIE------EREITSLRLRDATILDLEEQIRDLTVYI 440 (484)
Q Consensus 385 ~e~~~l~~ln~~L~~nq~~~~~~~~~~e------~~~~~~~~~~~~~i~eL~EQvrDLmf~l 440 (484)
++++.+..--+.|++.+....++|.++. +......+...++|.+|+++++++---|
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444321 1222333444567777777777776544
No 456
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.48 E-value=1.4e+02 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKKAVADVNSKLI 398 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~~l~~ln~~L~ 398 (484)
...|.++|..++++...++..|..|+
T Consensus 36 N~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 36 NSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 34445555555555555555555443
No 457
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.43 E-value=57 Score=21.97 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 011525 373 MQDIQNELDICEEAKK 388 (484)
Q Consensus 373 ~~~l~~~l~kl~~e~~ 388 (484)
+.+|+.+.+.|..++.
T Consensus 3 MnQLE~kVEeLl~~n~ 18 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNX 18 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444444444433
No 458
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.16 E-value=29 Score=29.07 Aligned_cols=31 Identities=23% Similarity=0.612 Sum_probs=18.0
Q ss_pred cCccccCCcCCCCCCceeecCCCcccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~ 199 (484)
.|.||.+.-+++..-+.--.|...||..|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 5777775432221222223577889998885
No 459
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=34.15 E-value=22 Score=32.67 Aligned_cols=40 Identities=23% Similarity=0.636 Sum_probs=25.0
Q ss_pred CcCccccCCcCCCCCCceeecCCCcccccccccc------CCcccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRF 211 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w------~~~~CPvCR~ 211 (484)
..|.+|.+--+ -+.--.|...||..|+..- +.+.||.|+.
T Consensus 3 ~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 3 TICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CCBTTTCCCSS----CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred CcCccCCCCCc----eeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 46889984321 1223467889999998521 2456777765
No 460
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.80 E-value=1.8e+02 Score=23.23 Aligned_cols=10 Identities=50% Similarity=0.873 Sum_probs=4.0
Q ss_pred HhHHHHHHhH
Q 011525 427 LDLEEQIRDL 436 (484)
Q Consensus 427 ~eL~EQvrDL 436 (484)
.||+-||..|
T Consensus 66 ~dLE~kvesL 75 (86)
T 3swk_A 66 LDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 461
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.61 E-value=1.6e+02 Score=26.85 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
..-+++||.-|.++.++... .+-+.+-.+|..++.-++.-++....-....+..+..|+.+..+|...++.
T Consensus 11 ~~~l~~Lq~~i~~l~~~~~~--~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~ 81 (174)
T 2p22_A 11 HEMLQNLQTVVNELYREDVD--YVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV 81 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.39 E-value=11 Score=28.79 Aligned_cols=36 Identities=19% Similarity=0.546 Sum_probs=23.7
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccccCCccccccccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 212 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~ 212 (484)
|.|+.|-+.+.... .+. .-+..||..|. .|..|...
T Consensus 1 p~C~~C~~~I~~~~--~v~-a~~~~~H~~CF------~C~~C~~~ 36 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVT-SLGKDWHRPCL------KCEKCGKT 36 (76)
T ss_dssp CBCTTTSSBCCGGG--EEE-ETTEEEETTTC------BCTTTCCB
T ss_pred CcCCCCCCEEECce--EEE-ECCccccCCCC------CccccCcc
Confidence 67999998876331 233 33778888875 56677653
No 463
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.35 E-value=64 Score=25.87 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011525 400 NQEIMRKKFKEIEEREIT 417 (484)
Q Consensus 400 nq~~~~~~~~~~e~~~~~ 417 (484)
..+.++..+..+|.....
T Consensus 29 ~l~~~q~~i~~lE~el~~ 46 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAE 46 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555544433
No 464
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=33.31 E-value=15 Score=28.87 Aligned_cols=39 Identities=18% Similarity=0.472 Sum_probs=27.8
Q ss_pred CCccCCCCC---CCceeeccccccccccCCCCCcccc-ccCCC---CCce
Q 011525 218 RPTCSVCGT---VENLWVCLICGFVGCGRYKEGHAVR-HWKDT---QHWY 260 (484)
Q Consensus 218 ~~~C~~C~~---~~nlWiCL~CG~vGCgr~~~~HA~~-H~~~t---~H~~ 260 (484)
...|+.|.. ......||.|....| ..|... |.... .|.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C----~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhh----hhhhHhhcCCCCCCCCCcc
Confidence 466888864 346889999999999 667775 75543 5654
No 465
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.29 E-value=28 Score=24.73 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=18.8
Q ss_pred cCccccCCcCCCCCCceeecCCCcccccccc
Q 011525 169 TCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (484)
Q Consensus 169 tCpICLe~l~~~~~givt~~C~H~Fh~~Cl~ 199 (484)
.|.||...-+.. .-+.=-.|...||..|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCC
Confidence 588888654322 112223677889999985
No 466
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=32.98 E-value=1.1e+02 Score=28.58 Aligned_cols=100 Identities=9% Similarity=0.024 Sum_probs=57.7
Q ss_pred ceeecCCCccc-cc---CCCCceeeeeeeEEEccCCCCCcC---CCCCCCCcEEEEeccCCCCChhHHHHhhccccccee
Q 011525 22 FCTVSSTATRS-RA---NPNPKFSERRGLVHLFRGTSQSYQ---QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE 94 (484)
Q Consensus 22 ~~~~~s~~~~~-~~---~gnp~v~~~~g~~hl~r~~~~~~~---~~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~ 94 (484)
.-.|.-.+.|= |. .++...+-|.|.|||.+....... -...+...+++=..|...|.+.. ....-.
T Consensus 46 e~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~-------~~~s~k 118 (201)
T 1k5d_B 46 EELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKP-------NAGSDR 118 (201)
T ss_dssp CCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCB-------CSSCSS
T ss_pred eEEEEEeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeee-------cCCCCc
Confidence 33444445553 31 467799999999999987532211 00011245666666777777652 111111
Q ss_pred EEEE-E-e--cCCCCcceEEEEEecChhcHHHHHhhhc
Q 011525 95 ELIF-I-R--NDAMEDRYSVLIKLVDQLTADEFYSNLN 128 (484)
Q Consensus 95 ~~ri-i-r--~~~~pn~ymvLikF~~~~~A~~f~~~~n 128 (484)
.+.+ . . .++.+..-..+|+|.+...|++|+..|.
T Consensus 119 s~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~e 156 (201)
T 1k5d_B 119 AWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFE 156 (201)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred eEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 2222 1 2 1223344578999999999999999884
No 467
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=32.98 E-value=1.3e+02 Score=26.31 Aligned_cols=102 Identities=8% Similarity=0.023 Sum_probs=59.9
Q ss_pred cceeecCCCccc-ccC-CCCceeeeeeeEEEccCCCCCcC---CCCCCCCcEEEEeccCCCCChhHHHHhhcccccceeE
Q 011525 21 GFCTVSSTATRS-RAN-PNPKFSERRGLVHLFRGTSQSYQ---QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE 95 (484)
Q Consensus 21 ~~~~~~s~~~~~-~~~-gnp~v~~~~g~~hl~r~~~~~~~---~~~~~~~~~l~il~vP~~~~~~d~l~F~~~~~~~i~~ 95 (484)
+.--|...+.+= |.. .+..-+-|.|.+||-+....... -...+...+++=..|...|++... .++ .-+-
T Consensus 22 E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~---~~s---~k~~ 95 (140)
T 4hat_B 22 EEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPN---VGS---DRSW 95 (140)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCC---TTC---SSEE
T ss_pred eeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeEEeEc---CCC---CceE
Confidence 344455555663 544 45789999999999876532211 011122456666667778876531 011 1121
Q ss_pred EEEE-ec--CCCCcceEEEEEecChhcHHHHHhhhc
Q 011525 96 LIFI-RN--DAMEDRYSVLIKLVDQLTADEFYSNLN 128 (484)
Q Consensus 96 ~rii-r~--~~~pn~ymvLikF~~~~~A~~f~~~~n 128 (484)
+.+. .+ ++.|.--..+|+|.+.+.|++|+..|.
T Consensus 96 v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~e 131 (140)
T 4hat_B 96 VYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFE 131 (140)
T ss_dssp EEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 2222 22 343434568999999999999999874
No 468
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=32.83 E-value=3e+02 Score=25.40 Aligned_cols=108 Identities=11% Similarity=0.165 Sum_probs=57.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 011525 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA---------- 389 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~---------- 389 (484)
...++.-+..+.-.-|+...+.-|.-...-+++++.+.+.... .+...+...+..++.++.-..++++.
T Consensus 59 l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~-el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr 137 (216)
T 2lem_A 59 LQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLD-EFQKKWKEDVELYRQKASPQGAELQESARQKLQELQ 137 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSC
T ss_pred HHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4566766777766667676666666666666666655443222 22223344555555555433333221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011525 390 ------VADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEE 431 (484)
Q Consensus 390 ------l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~E 431 (484)
.++|-..+..|.+.++..+.=.-++.+.. .++.+++|++
T Consensus 138 ~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~k---l~~~leeL~~ 182 (216)
T 2lem_A 138 GRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRES---LAQRLAELKS 182 (216)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH---HHHHHHHHhC
Confidence 24566667777777776654443333322 2344555555
No 469
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=32.74 E-value=2.5e+02 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHhHH
Q 011525 403 IMRKKFKEIEEREIT---SLRLRDATILDLEEQIRDLT 437 (484)
Q Consensus 403 ~~~~~~~~~e~~~~~---~~~~~~~~i~eL~EQvrDLm 437 (484)
.+-.+|..+|++.-. ..+..+-+|+||..+|.||+
T Consensus 69 eLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 344444445444322 23344568999999999996
No 470
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=32.42 E-value=1.2e+02 Score=25.71 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=44.8
Q ss_pred cEEEEeccCCCCChhHHHHhhccc------ccceeEEEEEecCCCCcceEEEEEecChhcHHHHHh
Q 011525 66 TCIFVVAVPNYLSSDEFVRFCGSH------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYS 125 (484)
Q Consensus 66 ~~l~il~vP~~~~~~d~l~F~~~~------~~~i~~~riir~~~~pn~ymvLikF~~~~~A~~f~~ 125 (484)
+++..+-|+.. ..+|+..+... ...-..+.+.|....|++|+++..+.|.++-+.+..
T Consensus 25 ~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~~p~~yv~~~~W~s~ea~~a~~~ 88 (128)
T 3kg0_A 25 TFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDAFRRALA 88 (128)
T ss_dssp EEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEEEEEECTTCSSEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEcCCCCCEEEEEEEECCHHHHHHHHc
Confidence 44666778887 88998866432 457788999997666899999999999988777654
No 471
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.17 E-value=19 Score=28.73 Aligned_cols=18 Identities=28% Similarity=0.892 Sum_probs=11.0
Q ss_pred cCCCCCC--Cceeecccccc
Q 011525 221 CSVCGTV--ENLWVCLICGF 238 (484)
Q Consensus 221 C~~C~~~--~nlWiCL~CG~ 238 (484)
|..|... +..|+|.+|-.
T Consensus 53 C~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 53 CRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp CTTSEEECSTTCEEEHHHHS
T ss_pred cccccccCCCCCEEEeeCch
Confidence 4444432 25799988854
No 472
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=32.08 E-value=1.9e+02 Score=22.90 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 368 AVASKMQDIQNELDICEEAKKAVADVNSKLIKN 400 (484)
Q Consensus 368 ~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n 400 (484)
++.++++.++..+.........+......|.++
T Consensus 40 ~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~ 72 (107)
T 2spc_A 40 ALIKKHEDFDKAINGHEQKIAALQTVADQLIAQ 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455677777777766666666665555566543
No 473
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.83 E-value=13 Score=34.76 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=5.4
Q ss_pred eeecccccc
Q 011525 230 LWVCLICGF 238 (484)
Q Consensus 230 lWiCL~CG~ 238 (484)
+|.|.+||.
T Consensus 186 p~~CP~C~~ 194 (202)
T 1yuz_A 186 FEKCPICFR 194 (202)
T ss_dssp CSBCTTTCC
T ss_pred CCCCCCCCC
Confidence 466666665
No 474
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=31.72 E-value=12 Score=31.33 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=20.0
Q ss_pred CCcCccccCCcCCCCCCceee-cCCCcccccccc
Q 011525 167 LPTCPICLERLDPDTSGILST-ICDHSFQCSCTA 199 (484)
Q Consensus 167 ~ptCpICLe~l~~~~~givt~-~C~H~Fh~~Cl~ 199 (484)
.-.|++|...+++...-|.-- .|..=||..|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 346999999876542211111 455668888874
No 475
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=30.93 E-value=23 Score=28.66 Aligned_cols=37 Identities=22% Similarity=0.540 Sum_probs=22.3
Q ss_pred CCCCCCcCccccCCcCCCCCCce-eecCCCcccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGIL-STICDHSFQCSCTA 199 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~giv-t~~C~H~Fh~~Cl~ 199 (484)
...+...|.||...-..+...++ --.|.-.||..|+.
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC
Confidence 34577899999875422111111 22567789988874
No 476
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=30.91 E-value=17 Score=30.14 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=14.5
Q ss_pred HHHhHHHHHHhHHHhhhh
Q 011525 425 TILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~lea 442 (484)
....|++.+-|++|||-.
T Consensus 73 ~~~~l~eElgDvL~~l~~ 90 (111)
T 2oie_A 73 ERAALQEELSDVLIYLVA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346789999999999843
No 477
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=30.77 E-value=1.6e+02 Score=25.47 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=12.6
Q ss_pred HHHhHHHHHHhHHHhhhhHHHhhccCCCCCccCcEEeecCCCCC
Q 011525 425 TILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQS 468 (484)
Q Consensus 425 ~i~eL~EQvrDLmf~leaq~ki~~~~~~~ei~~G~v~~~~~~~~ 468 (484)
-|.||.++|+|.-= -++|.++-.. -..+.|++.+..++
T Consensus 49 IIkDisdkId~CeC----nkei~e~L~~--~~k~~iip~~~e~~ 86 (129)
T 3f6n_A 49 IVNDLTKLINDCPC----NKEILEALGT--QPKEQLIEQPKEKG 86 (129)
T ss_dssp HHHHHHHHHHTCTT----HHHHHHHHTC----------------
T ss_pred HHHHHHHHHhcCcc----hHHHHHHHcc--CCcccccCCCCCCC
Confidence 47788777776543 3344432111 12566665554443
No 478
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.61 E-value=59 Score=25.13 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=27.4
Q ss_pred CCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccc
Q 011525 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 161 ~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
+......+.|+.|...+.... ....-+..||..|. .|-.|..
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~e---~v~a~~~~wH~~CF------~C~~C~~ 50 (82)
T 2co8_A 9 HQEAGAGDLCALCGEHLYVLE---RLCVNGHFFHRSCF------RCHTCEA 50 (82)
T ss_dssp CCCCCSSCBCSSSCCBCCTTT---BCCBTTBCCBTTTC------BCSSSCC
T ss_pred CcCCCCCCCCcccCCCcccce---EEEECCCeeCCCcC------EEcCCCC
Confidence 334556789999999885321 22245778898885 5666754
No 479
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.11 E-value=1.3e+02 Score=22.46 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 388 KAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 388 ~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
..|+++|..|.....++ |. ++.+++++|..|..-++|-
T Consensus 14 ~kLKq~n~~L~~kv~~L-------e~----~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHL-------EF----SCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHc
Confidence 34557776666544433 32 3455666777777666653
No 480
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.01 E-value=55 Score=26.66 Aligned_cols=44 Identities=20% Similarity=0.537 Sum_probs=27.4
Q ss_pred CCCCCcCccccCCcCCCCCCceeecCCCcccccccccc------CCcccccccc
Q 011525 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW------TVLSCQVCRF 211 (484)
Q Consensus 164 l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w------~~~~CPvCR~ 211 (484)
-.....|.+|...- . -+.--.|...||..|+..- +...||.|+.
T Consensus 22 d~n~~~C~vC~~~g--~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKPG--D--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSSS--C--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCCC--C--EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 34567899998642 1 1122357788999998531 2456777764
No 481
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.95 E-value=54 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=27.6
Q ss_pred CCCCCCcCccccCCcCCCCCCceeecCCCccccccccccCCcccccccc
Q 011525 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (484)
Q Consensus 163 ~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~ 211 (484)
.....+.|..|.+.+... ....-+..||..|. .|-.|..
T Consensus 21 ~~~~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF------~C~~C~~ 59 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGA----VVKARDKYRHPECF------VCADCNL 59 (89)
T ss_dssp CCCSCCBCTTTCCBCCSC----CEESSSCEECTTTC------CCSSSCC
T ss_pred CCCcCCCcccCCCEeccc----EEEECCceECccCC------EecCCCC
Confidence 445678999999988753 33456788998874 5666754
No 482
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.94 E-value=71 Score=24.79 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHH
Q 011525 419 LRLRDATILDLEEQIR 434 (484)
Q Consensus 419 ~~~~~~~i~eL~EQvr 434 (484)
+..++++|++|++++.
T Consensus 34 L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567778888887764
No 483
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.87 E-value=50 Score=24.98 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred CcCccccCCcCCCCCCceeecCCCccccccccccCCccccccccccccCCCCccCCCCCCCceeecccc
Q 011525 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLIC 236 (484)
Q Consensus 168 ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~~~~CPvCR~~~~~~~~~~C~~C~~~~nlWiCL~C 236 (484)
+.|+.|-..+... ....-+..||..|. .|..|.. ....-..+...++...|..|
T Consensus 6 ~~C~~C~~~I~~~----~v~a~~~~wH~~CF------~C~~C~~-----~L~~~~~f~~~~~~~yC~~C 59 (73)
T 1wig_A 6 SGCDSCEKYITGR----VLEAGEKHYHPSCA------LCVRCGQ-----MFAEGEEMYLQGSSIWHPAC 59 (73)
T ss_dssp CSCSSSCCCCSSC----CBCCSSCCBCTTTS------CCSSSCC-----CCCSSCCCEEETTEEECTTH
T ss_pred CCcccCCCEecCe----eEEeCCCCCCCCcC------EeCCCCC-----CCCCCCeeEeeCCEEEChHH
No 484
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.80 E-value=2.9e+02 Score=29.19 Aligned_cols=72 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 371 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK-------EIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 371 ~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~-------~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
.++.+|.++..++..+.+.++.....+.+....+++.-+ +-.+......+...++|.+|+++++++---|..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.76 E-value=31 Score=25.18 Aligned_cols=48 Identities=13% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCCCCCcCccccCCcCCCCCCceeecCCCccccccccccC------Ccccccccc
Q 011525 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRF 211 (484)
Q Consensus 160 ~~~~l~e~ptCpICLe~l~~~~~givt~~C~H~Fh~~Cl~~w~------~~~CPvCR~ 211 (484)
+...-.....|.||...-+-- .--.|...||..|+..-. ...||.|..
T Consensus 2 s~g~~~~~~~C~vC~~~g~ll----~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 2 SSGSSGHEDFCSVCRKSGQLL----MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCCCSSCCSCSSSCCSSCCE----ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCcCCCCCCCccCCCCCeEE----EcCCCCcceECccCCCCcCCCCCCceEChhhhC
No 486
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.72 E-value=4.2e+02 Score=27.20 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKL 397 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLt--sQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L 397 (484)
+...++.-..+...+|. +++-+.-..|-..|...-.+.++...+..+.+ .++.+++.+++.+++.-.......-+.|
T Consensus 32 ~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~-tq~skkml~~~~~~e~~~~~~~~~i~~l 110 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL-TQKSKKIIEEIIRYENTILAHENTIQQL 110 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011525 398 IKNQEIMRKKFKEIEEREITSL 419 (484)
Q Consensus 398 ~~nq~~~~~~~~~~e~~~~~~~ 419 (484)
+......+.+|.+|+.....+.
T Consensus 111 ~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 111 TDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
No 487
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.49 E-value=59 Score=26.77 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhH
Q 011525 395 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 443 (484)
Q Consensus 395 ~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq 443 (484)
..|++....+.+.+.++|.+....+...+..|.+|+.+++.+-.-++.|
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=29.42 E-value=97 Score=24.28 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 011525 322 SKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAK 354 (484)
Q Consensus 322 ~K~e~~~~EY~~LLt--sQLEsQR~yyE~~l~~~~ 354 (484)
.|+.++..|...++. .+||..|.||-++|.+++
T Consensus 9 kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE 43 (75)
T 3mtu_A 9 KKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIE 43 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 489
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=29.41 E-value=76 Score=29.14 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 399 (484)
Q Consensus 320 ~~~K~e~~~~EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~ 399 (484)
...|+.-+..+...-|..+++.-|.-...-|++++.+.+. ..+.+...+...+++++.+|.=..++.+. .+++.+.+
T Consensus 78 l~~qL~P~~~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P-~~eEL~~~l~~~~Eelr~~L~Py~eelr~--kl~~~~ee 154 (191)
T 1nfn_A 78 LEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQ-YRGEVQAMLGQSTEELRVRLASHLRKLRK--RLLRDADD 154 (191)
T ss_dssp HTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTTCCCHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011525 400 NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 434 (484)
Q Consensus 400 nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvr 434 (484)
-+..+.--.+++.++...-.....+.+..+-|++|
T Consensus 155 Lr~~l~P~~eelk~~l~~~veel~~~L~P~~e~~r 189 (191)
T 1nfn_A 155 LQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGR 189 (191)
T ss_dssp HHHHHHHHTC-------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
No 490
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=29.24 E-value=4.4e+02 Score=27.19 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011525 366 EKAVASKMQDIQNELDICEEAKKAVADVNSKLIKN--------------QEIMRKKFKEIEEREITSLRLRDATILDLEE 431 (484)
Q Consensus 366 ~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~n--------------q~~~~~~~~~~e~~~~~~~~~~~~~i~eL~E 431 (484)
++.+...+++|+..|+++..-.....++-..|... ..+..+++-+-..+...++...+.+|..|++
T Consensus 33 e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 33 QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQE 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHhH
Q 011525 432 QIRDL 436 (484)
Q Consensus 432 QvrDL 436 (484)
++...
T Consensus 113 ~~~~~ 117 (411)
T 3ghg_C 113 IYNSN 117 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
No 491
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.21 E-value=32 Score=27.98 Aligned_cols=32 Identities=38% Similarity=0.826 Sum_probs=0.0
Q ss_pred CCCccCCCCCCCce---eecccccccccc--CCCCCcc
Q 011525 217 ERPTCSVCGTVENL---WVCLICGFVGCG--RYKEGHA 249 (484)
Q Consensus 217 ~~~~C~~C~~~~nl---WiCL~CG~vGCg--r~~~~HA 249 (484)
...+|..|+....+ +.|- ||...|+ ||...|.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~ 60 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHG 60 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGT
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCC
No 492
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.11 E-value=1.7e+02 Score=21.40 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 377 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 377 ~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
+.++..+..+...+..-|..|.+-...-+.++..|.++..++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.98 E-value=2.4e+02 Score=23.17 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKK--------FKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~--------~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
..+.+.|+.+|+.++++......--++|.+-+..+.+. ++..-.+....+.....++.-++..+.++
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.92 E-value=1.3e+02 Score=30.81 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011525 378 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEE 431 (484)
Q Consensus 378 ~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~E 431 (484)
.+++.++.+.+.+++..+.|.+..+.++..+++++++..+....+..--++|+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.92 E-value=2.5e+02 Score=23.89 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 011525 373 MQDIQNELDICEEA----KKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 436 (484)
Q Consensus 373 ~~~l~~~l~kl~~e----~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDL 436 (484)
+++||.++...+.. +++|++-++....+=+...+..-.-....-..++ .+|.+|+-||.|.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq---~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQ---AKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 496
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.74 E-value=2.7e+02 Score=23.62 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhhHHH
Q 011525 388 KAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKT 445 (484)
Q Consensus 388 ~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~leaq~k 445 (484)
+.|..+-+.|.+.+++....-+++|+...........+|.+|.+++..--..|..=++
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.52 E-value=1.6e+02 Score=24.11 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhhhh
Q 011525 370 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 442 (484)
Q Consensus 370 ~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~~~~~~~~i~eL~EQvrDLmf~lea 442 (484)
..++..|+.+...|+.....++. .+....+.++..+..+|............+..|-+ .+-|+-.-|+.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~---~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~Le~ 79 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELED---LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE-QLLDVKLALDM 79 (95)
T ss_dssp -------CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
No 498
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.49 E-value=4.7e+02 Score=26.38 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 330 EYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 409 (484)
Q Consensus 330 EY~~LLtsQLEsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~ 409 (484)
|-..+..-|+..|..|-.+-+.....+....-.. .+..-...|+.+|+.+..-+..|.+--+.-.+....+.+++.
T Consensus 168 ~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~----~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (373)
T 3hhm_B 168 ETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQ----RIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMN 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 011525 410 EIEEREITSLRLRDATILDLEEQ 432 (484)
Q Consensus 410 ~~e~~~~~~~~~~~~~i~eL~EQ 432 (484)
.+.-..-.+.+.+|.=+..|.+.
T Consensus 244 ~lkp~l~ql~k~rd~~~~~L~~~ 266 (373)
T 3hhm_B 244 SIKPDLIQLRKTRDQYLMWLTQK 266 (373)
T ss_dssp HHHHHHHHHHHHHTC--------
T ss_pred ccChHHHHHHHHHHHHHHHHHHc
No 499
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.43 E-value=2e+02 Score=26.08 Aligned_cols=74 Identities=7% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011525 340 ETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 418 (484)
Q Consensus 340 EsQR~yyE~~l~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~kl~~e~~~l~~ln~~L~~nq~~~~~~~~~~e~~~~~~ 418 (484)
++|+.=+.++.++...+. .++.+++..+.++|+.-+..-.-+.++++++.+.+.+.+.++...--+...+.++.
T Consensus 70 ~EQq~ql~~I~~e~r~~~-----~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQT-----SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.37 E-value=14 Score=33.13 Aligned_cols=40 Identities=23% Similarity=0.689 Sum_probs=0.0
Q ss_pred CCccccccccccC-----CccccccccccccCCCCccCCCC---CCCceeecccc
Q 011525 190 DHSFQCSCTAKWT-----VLSCQVCRFCHQQDERPTCSVCG---TVENLWVCLIC 236 (484)
Q Consensus 190 ~H~Fh~~Cl~~w~-----~~~CPvCR~~~~~~~~~~C~~C~---~~~nlWiCL~C 236 (484)
+...|..|....+ ...|..|.+.. |..|+ ..+..|+|.+|
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-------C~~C~~~~~~~~~W~C~vC 114 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-------CKSCSHAHPEEQGWLCDPC 114 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-------CGGGEECCSSSSSCEEHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-------hcccccccCCCCcEeeHHH
Done!