BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011526
         (484 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 214 GLIDAAPWIRVPW---PFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPM 270
           G++D  P I   W   P  +  P F+      ++ A+ V + E  G     A       +
Sbjct: 200 GIVDTTPIINAHWFALPTLY-TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLL 258

Query: 271 PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFS 330
               L R +   G+  ++SG FG+   T+   EN G++A+TRV S  V+  +A F I  S
Sbjct: 259 RDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLS 317

Query: 331 VLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 366
            +GK  A    IP P++  +  L +  +GA G+  L
Sbjct: 318 CVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,028,402
Number of Sequences: 62578
Number of extensions: 575153
Number of successful extensions: 1348
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 3
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)