Query 011526
Match_columns 484
No_of_seqs 189 out of 1753
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 3.1E-90 6.8E-95 705.1 31.7 476 1-484 25-508 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 1.1E-76 2.4E-81 613.9 31.3 385 1-442 29-436 (451)
3 PRK11412 putative uracil/xanth 100.0 1.9E-73 4.2E-78 596.8 35.4 389 1-442 21-430 (433)
4 TIGR03173 pbuX xanthine permea 100.0 1.9E-64 4.2E-69 529.9 33.9 381 1-440 8-406 (406)
5 TIGR00801 ncs2 uracil-xanthine 100.0 3.1E-63 6.8E-68 521.4 34.5 375 1-438 18-415 (415)
6 PRK10720 uracil transporter; P 100.0 5.2E-63 1.1E-67 520.6 34.3 365 1-442 27-408 (428)
7 TIGR03616 RutG pyrimidine util 100.0 1.2E-61 2.5E-66 510.3 34.5 377 1-442 43-428 (429)
8 PF00860 Xan_ur_permease: Perm 100.0 1.3E-59 2.8E-64 490.7 20.4 358 1-393 14-386 (389)
9 COG2252 Xanthine/uracil/vitami 100.0 1.5E-28 3.3E-33 253.7 27.0 351 6-440 38-412 (436)
10 COG0659 SUL1 Sulfate permease 99.9 2.5E-21 5.3E-26 209.6 28.8 308 4-366 32-371 (554)
11 TIGR00843 benE benzoate transp 99.9 4.1E-20 8.8E-25 190.7 29.9 301 4-360 37-347 (395)
12 PRK11660 putative transporter; 99.8 4.4E-18 9.6E-23 186.2 27.6 309 4-353 40-388 (568)
13 TIGR00815 sulP high affinity s 99.8 7.7E-18 1.7E-22 184.1 27.6 306 4-353 25-368 (563)
14 PF03594 BenE: Benzoate membra 99.7 1.2E-14 2.6E-19 148.1 27.3 301 4-359 21-330 (378)
15 PF00916 Sulfate_transp: Sulfa 99.6 4.9E-15 1.1E-19 148.0 10.6 243 103-370 1-274 (280)
16 COG3135 BenE Uncharacterized p 99.6 2.1E-12 4.6E-17 129.2 27.4 292 3-349 35-334 (402)
17 KOG0236 Sulfate/bicarbonate/ox 99.4 1.7E-11 3.7E-16 136.1 24.7 326 4-367 91-452 (665)
18 TIGR00834 ae anion exchange pr 98.4 5.2E-05 1.1E-09 86.2 24.2 319 26-369 402-799 (900)
19 KOG1172 Na+-independent Cl/HCO 98.3 0.00013 2.9E-09 81.3 24.7 338 2-368 370-774 (876)
20 PF11840 DUF3360: Protein of u 97.6 0.012 2.5E-07 60.4 20.8 312 14-371 85-418 (492)
21 PF00955 HCO3_cotransp: HCO3- 96.5 0.0011 2.3E-08 71.7 1.5 185 168-368 276-479 (510)
22 COG0659 SUL1 Sulfate permease 83.3 12 0.00026 41.4 11.8 120 240-371 25-155 (554)
23 TIGR00815 sulP high affinity s 80.5 18 0.00038 40.1 12.0 116 240-367 18-150 (563)
24 PRK11660 putative transporter; 64.3 41 0.00088 37.3 9.9 115 240-366 33-155 (568)
25 KOG4085 Uncharacterized conser 55.4 26 0.00057 31.6 5.2 44 312-359 29-72 (175)
26 PF03594 BenE: Benzoate membra 52.3 37 0.00081 35.6 6.5 115 234-352 2-127 (378)
27 TIGR00843 benE benzoate transp 46.4 54 0.0012 34.8 6.8 114 237-351 21-142 (395)
28 TIGR00822 EII-Sor PTS system, 34.7 1E+02 0.0022 30.9 6.2 40 332-372 163-202 (265)
29 TIGR03173 pbuX xanthine permea 33.8 4.9E+02 0.011 27.3 11.8 32 93-124 298-329 (406)
30 PRK11412 putative uracil/xanth 33.6 2.4E+02 0.0052 30.3 9.3 32 93-124 320-351 (433)
31 PF13142 DUF3960: Domain of un 32.0 22 0.00048 28.7 0.9 27 433-459 23-49 (87)
32 COG4129 Predicted membrane pro 31.9 5E+02 0.011 26.9 11.0 79 28-128 14-92 (332)
33 TIGR00801 ncs2 uracil-xanthine 28.1 2E+02 0.0043 30.6 7.6 34 92-125 313-346 (415)
34 COG0004 AmtB Ammonia permease 27.3 48 0.001 35.2 2.7 40 424-463 364-403 (409)
35 PF00860 Xan_ur_permease: Perm 26.4 1E+02 0.0022 32.3 5.0 52 319-370 96-147 (389)
36 PRK10720 uracil transporter; P 22.2 2.6E+02 0.0055 29.9 7.1 46 319-364 93-141 (428)
37 TIGR00931 antiport_nhaC Na+/H+ 22.1 1E+03 0.022 25.7 13.7 30 237-266 310-339 (454)
38 PF04172 LrgB: LrgB-like famil 20.8 1.9E+02 0.0041 28.0 5.2 78 108-191 11-94 (215)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.1e-90 Score=705.12 Aligned_cols=476 Identities=59% Similarity=1.075 Sum_probs=450.2
Q ss_pred CccceehHHHHhhhhcCCChHHH-HHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCC---C
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEK-AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYS---G 76 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~-~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~---~ 76 (484)
|+++++++|.+++++++.+++|. +++||++++++||.|++|++||.|||++||+||+|++|+.++.....+.|.. +
T Consensus 25 ~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~ 104 (510)
T KOG1292|consen 25 CLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHE 104 (510)
T ss_pred HhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCccc
Confidence 68999999999999999999999 9999999999999999999999999999999999999999998866666643 2
Q ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCccchhhhHHHHHHHHHH
Q 011526 77 DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVF 156 (484)
Q Consensus 77 ~~~~~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~~~~l~~~i~ 156 (484)
++++.|++.+++++|++++++++++++|++|+.+++.|++.|+.+.+++.++|++++..+.+.++.+|.+++..+++.++
T Consensus 105 ~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~~~~weI~l~~~llli~ 184 (510)
T KOG1292|consen 105 TDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKLGKHWEISLPEILLLIL 184 (510)
T ss_pred chhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhhhhheeecHHHHHHHHH
Confidence 23346999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--hcccc--ccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCccccccccccC
Q 011526 157 ISQY--LPHVI--KRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGA 232 (484)
Q Consensus 157 l~~~--~~~~~--~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P~~~~~g~ 232 (484)
+++| .++.. ..+++.++++++++++.+.|++|.++..+|.+|.+++.++.++|+|.+..++++||+.+|+|++||.
T Consensus 185 fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~ 264 (510)
T KOG1292|consen 185 FSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGP 264 (510)
T ss_pred HHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCC
Confidence 9999 53322 2347789999999999999999999999999999888899999999988889999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehhcc
Q 011526 233 PSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTR 312 (484)
Q Consensus 233 p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~Tg 312 (484)
|.||++....|+...++.++||+|++.+++|.+..++++++.+|||+..||++++++|++|+..++|.++||+|+++.||
T Consensus 265 P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTK 344 (510)
T KOG1292|consen 265 PTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTK 344 (510)
T ss_pred CcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeee
Confidence 99999999999999999999999999999999998888899999999999999999999999998888889999999999
Q ss_pred CCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeehhhHHHHhcchhh
Q 011526 313 VGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQ 392 (484)
Q Consensus 313 v~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~~Gl~~p~ 392 (484)
++||++++++|.+|++++++.||+|++++||.|++||+++++|+++...|+++++.+|+++.||++|+|+|+++|+.+|+
T Consensus 345 VgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~ 424 (510)
T KOG1292|consen 345 VGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQ 424 (510)
T ss_pred eeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhheeeccccccchhhhhHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCcCccchhcccccccccccccCCCCCCCcccC
Q 011526 393 YFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYS 472 (484)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 472 (484)
||+++ .+|.||+.+|++++++.++++.+.+|+++|++||+++|+ ++|||||+++|+|.++.+.|.+.+++|+
T Consensus 425 yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~g---atr~~RG~~~w~~~~~~~~d~~~~e~Y~ 496 (510)
T KOG1292|consen 425 YFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPG---ATREQRGLRWWDKFETFNGDVRNEEFYS 496 (510)
T ss_pred HHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCC---CChHhcCCcchhccccccCCcccccccc
Confidence 99996 567999999999999999999999999999999999995 2799999999999999999999999999
Q ss_pred CCcccccCCCCC
Q 011526 473 LPFNLNKYFPSV 484 (484)
Q Consensus 473 ~p~~~~~~~~~~ 484 (484)
||+++||+||+.
T Consensus 497 lP~~~n~~f~~~ 508 (510)
T KOG1292|consen 497 LPFNLNRFFPRI 508 (510)
T ss_pred CcHHHHhhcccC
Confidence 999999999974
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-76 Score=613.94 Aligned_cols=385 Identities=28% Similarity=0.483 Sum_probs=360.3
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceEeccccchHHHHHHHHhhcccCCCCC
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSG 76 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~----~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~ 76 (484)
||+++|+||++++.+.++++||+++++|+++|+||++|++|.+ +|.|+|+++|+||+|+.|++.+.++++
T Consensus 29 mfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g------ 102 (451)
T COG2233 29 MFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTG------ 102 (451)
T ss_pred HHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccC------
Confidence 7999999999999999999999999999999999999999997 566999999999999999988876653
Q ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhcCcccHHHHHHHHHHHhhhhhcCCcc--------------
Q 011526 77 DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-------------- 141 (484)
Q Consensus 77 ~~~~~~~~~~~~~~ga~~vaGlv~illg~~~~~~-~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~-------------- 141 (484)
++++.++|+++.+|+++++++.. ++ |++|+|||+|+|+++++||++|++++++++.
T Consensus 103 -------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~~~~ 173 (451)
T COG2233 103 -------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDFGSL 173 (451)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcccCch
Confidence 25899999999999999999974 56 9999999999999999999999999887543
Q ss_pred chhhhHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCC
Q 011526 142 KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPW 221 (484)
Q Consensus 142 ~~~~v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pw 221 (484)
+++.+++.+++++++++++.|+ ++|+.++|+|+++||++++.+|. +|+++ +.++||
T Consensus 174 ~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G~----------------vdf~~-v~~a~w 229 (451)
T COG2233 174 ENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMGM----------------VDFSG-VAEAPW 229 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhCC----------------cCccc-cccCce
Confidence 1467888999999999888765 68999999999999999999973 58886 889999
Q ss_pred ccccccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCcccc
Q 011526 222 IRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVS 301 (484)
Q Consensus 222 f~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~s 301 (484)
|++|.+++||. +|||.+++++++++++.++|++||++|+++.++++..++++++|++++||++|+++|+||++|.|+|+
T Consensus 230 ~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~Ttfa 308 (451)
T COG2233 230 FALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFA 308 (451)
T ss_pred eeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchh
Confidence 99999999999 99999999999999999999999999999999977666799999999999999999999999999999
Q ss_pred ccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCc-ceeeh
Q 011526 302 VENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFR-VKFIL 380 (484)
Q Consensus 302 s~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~r-n~~iv 380 (484)
||+|++++||++||+++..+++++++++++||+++++++||.||+||+.+++||++..+|+|.+.++|+|++| |.+|+
T Consensus 309 -qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~Ia~sGir~l~~~~~~~~~~Nl~Iv 387 (451)
T COG2233 309 -QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGMIAASGIRILIRNKVDRSRRNLLIV 387 (451)
T ss_pred -hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHhcccccCccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998756 99999
Q ss_pred hhHHHHhcch---hhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCc
Q 011526 381 GFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 442 (484)
Q Consensus 381 g~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~ 442 (484)
++++.+|++. |+++++ +|++++.+++||+++|+++|++||+++|+.
T Consensus 388 Avsl~~Gig~~~~p~~~~~----------------~p~~~~~l~~sGia~g~i~AIvLNlll~~~ 436 (451)
T COG2233 388 AVSLGLGIGVGAVPEVFLQ----------------LPAWLRPLLSSGIALGTLTAIVLNLLLPGE 436 (451)
T ss_pred hHHHHhCcchhcCchhhhh----------------CcHHHHHHHhccHHHHHHHHHHHHHhcccc
Confidence 9999999984 888887 799999999999999999999999999975
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=1.9e-73 Score=596.80 Aligned_cols=389 Identities=17% Similarity=0.311 Sum_probs=344.2
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCch
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVE 80 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~ 80 (484)
|+++++++|+++++++|+|++|+.+++|+++++|||+|++|+.+|||||++||+||+|+++++++.......+ .
T Consensus 21 m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g------~ 94 (433)
T PRK11412 21 IFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRG------T 94 (433)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccccC------c
Confidence 6889999999999999999999999999999999999999999999999999999999999999863211000 0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCcc---------------chhh
Q 011526 81 KFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA---------------KCVE 145 (484)
Q Consensus 81 ~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~---------------~~~~ 145 (484)
.+++.++..+|+++++|++++++|++++++|++|+|||+|+|+++++||+++++.+++++. .++.
T Consensus 95 ~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~~~~~~~~~~~~~ 174 (433)
T PRK11412 95 PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIADPNGKIQLPPFG 174 (433)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCcccccccchHHHH
Confidence 1123455566789999999999999999999999999999999999999999999877531 1234
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHH-HHhhcCCCCCCCccCccccccCcCCcCCCCCCccc
Q 011526 146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRV 224 (484)
Q Consensus 146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~-~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~ 224 (484)
+++.++++++.++++.| +++|++++|+|+++||+++. .+|. |++. +.+++|.
T Consensus 175 ~a~~~l~~il~~~~~~~-------g~~~~~svLiGiv~G~v~a~~~~g~-----------------d~~~-v~~a~w~-- 227 (433)
T PRK11412 175 LSVAVMCLVLAMIIFLP-------QRIARYSLLVGTIVGWILWAFCFPS-----------------SHSL-SGELHWQ-- 227 (433)
T ss_pred HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHhCC-----------------Ccch-hccCCce--
Confidence 66666766777766654 46899999999999999865 4431 4453 5678885
Q ss_pred cccccccCcc-cchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCcccccc
Q 011526 225 PWPFQWGAPS-FDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVE 303 (484)
Q Consensus 225 P~~~~~g~p~-f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~ 303 (484)
+++||.|. ||+++++++++++++.+.|++||++++++..+++..++++++|++++||++|+++|+||++|+|+|+ |
T Consensus 228 --~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~s-q 304 (433)
T PRK11412 228 --WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFV-S 304 (433)
T ss_pred --eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchh-h
Confidence 34589995 9999999999999999999999999999998866555789999999999999999999999999999 9
Q ss_pred chheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeehhhH
Q 011526 304 NAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFS 383 (484)
Q Consensus 304 n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~s 383 (484)
|+|++++||++||+++.++|+++++++|+||+++++++||.||+||+++++|+++..+|+|+++++|+| +||.+++|++
T Consensus 305 NvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~~~-~rn~~ivg~s 383 (433)
T PRK11412 305 SIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITFT-ARNIYRLALP 383 (433)
T ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccchhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred HHHhcch---h-hhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCc
Q 011526 384 IFIGLSV---P-QYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 442 (484)
Q Consensus 384 l~~Gl~~---p-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~ 442 (484)
+.+|++. | +++++ +|++++++++||+++|+++|++||+++|++
T Consensus 384 l~~Glg~~~~p~~~~~~----------------~P~~~~~~l~sgi~~g~l~AilLn~~~~~~ 430 (433)
T PRK11412 384 LFVGIFLMALPPVYLQD----------------LPLTLRPLLSNGLLVGILLAVLMENLIPWE 430 (433)
T ss_pred HHHHhhHHhCCHHHHHH----------------ChHHHHHHHcCcHHHHHHHHHHHHhhcCcc
Confidence 9999986 6 58887 799999999999999999999999999974
No 4
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.9e-64 Score=529.86 Aligned_cols=381 Identities=31% Similarity=0.525 Sum_probs=344.6
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH----HhCCCcceEeccccchHHHHHHHHhhcccCCCCC
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS----LFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSG 76 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~----~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~ 76 (484)
||++++++|+++++++|+|++|+..++|++++++|++|++|+ .+|+|+|+++|+|++++.+...+..+
T Consensus 8 ~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~-------- 79 (406)
T TIGR03173 8 MYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG-------- 79 (406)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh--------
Confidence 688999999999999999999999999999999999999998 47999999999999999987666432
Q ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCcc-----------chhh
Q 011526 77 DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-----------KCVE 145 (484)
Q Consensus 77 ~~~~~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~-----------~~~~ 145 (484)
++|++++|+++++|+++++++ +.++|++|+|||.|+|.++++||+++.+.++++.. +++.
T Consensus 80 -------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~~~~~~~ 150 (406)
T TIGR03173 80 -------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFGSPQNLG 150 (406)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchHHHH
Confidence 379999999999999999999 46899999999999999999999999988775432 2345
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcccc
Q 011526 146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 225 (484)
Q Consensus 146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P 225 (484)
+++.++++++++.++.| +++|++++|+++++||++++.+|. .|+++ +.++||+.+|
T Consensus 151 l~l~~l~~~il~~~~~~-------~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~~~~~~~P 206 (406)
T TIGR03173 151 LALLTLVIILLLNRFGK-------GFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAEAPWFALP 206 (406)
T ss_pred HHHHHHHHHHHHHHHhh-------hHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hccCCeeeCC
Confidence 77777776666655544 457899999999999999998874 24443 5668999999
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccch
Q 011526 226 WPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA 305 (484)
Q Consensus 226 ~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~ 305 (484)
.+++|+.|+||+..+..++.+++++++|++|+++++++..+++ .+++++||++.+||++|+++|++|++|.|+|+ ||+
T Consensus 207 ~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~-~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~-~~~ 284 (406)
T TIGR03173 207 TPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRP-ITEKDLAGGLRADGLGSALGGLFNTFPYTSFS-QNV 284 (406)
T ss_pred CCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhccchHHhccHHHHHHHHhCCCCCcchh-hhH
Confidence 9888999999999999999999999999999999999998754 45689999999999999999999999999999 999
Q ss_pred heehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeehhhHHH
Q 011526 306 GLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIF 385 (484)
Q Consensus 306 g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~ 385 (484)
|+++.||++||++..++++++++++++||++++++.||.||+||+++++|+++...|+|.+++.|+||+||.+|+|+++.
T Consensus 285 ~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~~ 364 (406)
T TIGR03173 285 GLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLIVAVSLG 364 (406)
T ss_pred HHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceehhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred Hhcch---hhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccC
Q 011526 386 IGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLH 440 (484)
Q Consensus 386 ~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~ 440 (484)
+|++. |+++++ +|+.++++++||+++|+++|++||+++|
T Consensus 365 ~g~~~~~~p~~~~~----------------~p~~~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 365 LGLGPTVVPEFFSQ----------------LPAWAQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred HHHHHHhhHHHHHH----------------ChHHHHHHHhCcHHHHHHHHHHHHhhcC
Confidence 99974 888887 7999999999999999999999999987
No 5
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=3.1e-63 Score=521.43 Aligned_cols=375 Identities=29% Similarity=0.473 Sum_probs=337.8
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCC---cceEeccccchHHHHHHHHhhcccCCCCCC
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTR---LPAVMGGSYTFVPSTISIILAGRFSNYSGD 77 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~r---lPiv~G~sf~~i~~~~~i~~~~g~~~~~~~ 77 (484)
||++++++|+++++++ +|++|+++++|+|++++|++|++|++.+++ +|.++|++|+|+++.+.+..+
T Consensus 18 ~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~--------- 87 (415)
T TIGR00801 18 MFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSG--------- 87 (415)
T ss_pred HHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhc---------
Confidence 6899999999999999 999999999999999999999999986544 699999999999988766432
Q ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHhh--h-hHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCcc-------------
Q 011526 78 PVEKFKRTMRAIQGSLIVASTLQIVLGFS--G-LWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA------------- 141 (484)
Q Consensus 78 ~~~~~~~~~~~~~ga~~vaGlv~illg~~--~-~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~------------- 141 (484)
++|++++|+++++|+++++++++ + .++|++|+|||.|+|.++++||+++++.++++.+
T Consensus 88 ------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~~~~ 161 (415)
T TIGR00801 88 ------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSATYGS 161 (415)
T ss_pred ------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccccCc
Confidence 26899999999999999999985 3 4578999999999999999999999999887642
Q ss_pred -chhhhHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCC
Q 011526 142 -KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAP 220 (484)
Q Consensus 142 -~~~~v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~p 220 (484)
.++.+++.++++++++.++.|+ ++|++++++|+++||++++.+|. +|+++ +.++|
T Consensus 162 ~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~----------------~~~~~-v~~~~ 217 (415)
T TIGR00801 162 LENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI----------------VDFSP-VIDAP 217 (415)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC----------------ccchh-hccCc
Confidence 1245777778777777766654 57899999999999999999874 35543 56789
Q ss_pred CccccccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccc
Q 011526 221 WIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSV 300 (484)
Q Consensus 221 wf~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ 300 (484)
|+++|.+++|| |+||++.+..++++++++++|++|+++++++.+++++++++++||++.+||++|+++|++|++|.|+|
T Consensus 218 ~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~ 296 (415)
T TIGR00801 218 WFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTF 296 (415)
T ss_pred ccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcch
Confidence 99999988888 79999999999999999999999999999999886554478999999999999999999999999999
Q ss_pred cccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeeh
Q 011526 301 SVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFIL 380 (484)
Q Consensus 301 ss~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~iv 380 (484)
+ ||+|+++.||++||++..++++++++++++||++++++.||.||+||+++++|+++..+|+|.+.+.|+|++||++++
T Consensus 297 s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~~~~~~~~r~~~i~ 375 (415)
T TIGR00801 297 A-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILIRNKLDNRRNRNII 375 (415)
T ss_pred h-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCccCcccceehH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred hhHHHHhcch---hhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhc
Q 011526 381 GFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNT 438 (484)
Q Consensus 381 g~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~ 438 (484)
++++.+|+++ |+++++ +| +++||+++|+++|++||++
T Consensus 376 ~~s~~~g~~~~~~p~~~~~----------------~p-----~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 376 AASVGLGLGVTGVPDIFGN----------------FP-----LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred HHHHHHHHHHhccHHHHhh----------------Cc-----hhcccHHHHHHHHHHHhcC
Confidence 9999999986 888766 56 7899999999999999974
No 6
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=5.2e-63 Score=520.65 Aligned_cols=365 Identities=22% Similarity=0.362 Sum_probs=322.8
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CCcceEeccccchHHHHHHHHhhcccCCCCCCCc
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFG-TRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPV 79 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G-~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~ 79 (484)
||++++++|+++ |+|+++ ++++||++|++|++.+ .|+|++||+||+|+++++.+..
T Consensus 27 m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~~------------ 83 (428)
T PRK10720 27 MFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP------------ 83 (428)
T ss_pred HHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHHH------------
Confidence 789999999986 788764 7899999999999865 5999999999999998877652
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhh--h-HHHHHHhcCcccHHHHHHHHHHHhhhhhcCCcc-----------chhh
Q 011526 80 EKFKRTMRAIQGSLIVASTLQIVLGFSG--L-WRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-----------KCVE 145 (484)
Q Consensus 80 ~~~~~~~~~~~ga~~vaGlv~illg~~~--~-~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~-----------~~~~ 145 (484)
++||+++|+++++|+++++++++. + ++|++|+|||.|+|.++++||+++.+.+.++.+ .++.
T Consensus 84 ----~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~g~~~~~~~~~~~~~~~ 159 (428)
T PRK10720 84 ----LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII 159 (428)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhccccCCCCcccchHHHH
Confidence 269999999999999999999972 2 678999999999999999999999999876542 2456
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcccc
Q 011526 146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 225 (484)
Q Consensus 146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P 225 (484)
+++.+++++++++++.|+ ++|++++|+|+++||++++.+|. .|++. +.+++|+++|
T Consensus 160 lalv~l~iil~~~~~~kg-------~~~~~~iLigIvvG~ila~~lG~----------------~d~~~-v~~a~~~~lP 215 (428)
T PRK10720 160 ISMVTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGM----------------VDTTP-IIEAHWFALP 215 (428)
T ss_pred HHHHHHHHHHHHHHHhcc-------HHHHhHHHHHHHHHHHHHHHhcC----------------CCHHH-hhcCccccCC
Confidence 777888777777666654 57899999999999999999874 34543 6678999999
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccch
Q 011526 226 WPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA 305 (484)
Q Consensus 226 ~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~ 305 (484)
. |+.|+||+..+..++..+++.++|++|++.++++..+++..+++++||++.+||++|+++|+||++|+|+|+ ||+
T Consensus 216 ~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~-en~ 291 (428)
T PRK10720 216 T---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENI 291 (428)
T ss_pred C---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccc-ccc
Confidence 4 567899999999999999999999999999999988765445689999999999999999999999999999 999
Q ss_pred heehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhh--hhcccCCCcceeehhhH
Q 011526 306 GLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL--QFCNLNSFRVKFILGFS 383 (484)
Q Consensus 306 g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l--~~v~~~~~rn~~ivg~s 383 (484)
|+++.||++||+++.++++++++++++||+++++++||.||+||+.+++|+++...|+|.+ +++|++++||.+++|++
T Consensus 292 g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~ 371 (428)
T PRK10720 292 GVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVI 371 (428)
T ss_pred ceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 78999888999999999
Q ss_pred HHHhcchhhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCc
Q 011526 384 IFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 442 (484)
Q Consensus 384 l~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~ 442 (484)
+.+|++...+ + ++.++.+|+..|+++|++||+++|..
T Consensus 372 l~~g~~~~~~--------------------~--~~~~~~~gi~~g~~~ai~Lnlll~~~ 408 (428)
T PRK10720 372 LIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGLSLIFKLI 408 (428)
T ss_pred HHHHHHHHHH--------------------H--HHHHhcCcHHHHHHHHHHHHHHhccc
Confidence 9999975321 1 45677899999999999999999975
No 7
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=1.2e-61 Score=510.26 Aligned_cols=377 Identities=21% Similarity=0.338 Sum_probs=324.1
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCc
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS-LFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPV 79 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~-~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~ 79 (484)
|+++++++|+++ |+|++ +++++||++|++|+ .+|+|+|++||+||+|+++++++.... ..+ .
T Consensus 43 m~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~-~~~----~- 105 (429)
T TIGR03616 43 MFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYN-GQG----T- 105 (429)
T ss_pred HHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhc-ccC----C-
Confidence 688999999996 68876 57999999999997 589999999999999999887664211 100 0
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHhcCcccHHHHHHHHHHHhhhhhcCCccc---hhhhHHHHHHH
Q 011526 80 EKFKRTMRAIQGSLIVASTLQIVLGFSGLW---RNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAK---CVEIGLPQLVI 153 (484)
Q Consensus 80 ~~~~~~~~~~~ga~~vaGlv~illg~~~~~---~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~---~~~v~~~~l~~ 153 (484)
++++++++|+++++|++++++++++.+ ++++|+|||+|+|+++++||+++++.++++.+. ....++.+++.
T Consensus 106 ---~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~~~~~~~al~tl~~ 182 (429)
T TIGR03616 106 ---NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASGFDSWMAVLTILC 182 (429)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 136899999999999999999998655 899999999999999999999999999886542 12256677777
Q ss_pred HHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCccccccccccCc
Q 011526 154 IVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAP 233 (484)
Q Consensus 154 ~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P~~~~~g~p 233 (484)
+++++++.|+ ++|++++|+|+++||++|+.++.. +.. .+++|++. +.++||+++| +|+.|
T Consensus 183 i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~--~g~-------~~~vd~s~-v~~a~~~~lP---~~~~p 242 (429)
T TIGR03616 183 IGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNV--FGL-------GKAVDFSP-ISQAAWFGLP---NFHTP 242 (429)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh--cCC-------CccccCcc-cccCccccCC---cCCCc
Confidence 7777766654 578999999999999999886421 110 02367775 6789999999 57788
Q ss_pred ccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehhccC
Q 011526 234 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRV 313 (484)
Q Consensus 234 ~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~Tgv 313 (484)
.||++.++++++.+++.++|++||+.++++..+++ .+++++|++++||++|+++|++|+.|.|+|+ ||+|+++.||+
T Consensus 243 ~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~--~~~~i~r~l~adGl~t~~agl~g~~p~tt~~-en~g~i~~T~v 319 (429)
T TIGR03616 243 VFNANAMLLIAPVALILVAENLGHFKAVAGMTGRN--LDPYMGRAFVGDGLATMLSGSVGGTGVTTYA-ENIGVMAVTKV 319 (429)
T ss_pred eEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCC--CCchhccchhhhhHHHHHHHhcCCCCCccee-eeeeeeeecCc
Confidence 99999999999999999999999999999998744 2447999999999999999999999999999 99999999999
Q ss_pred CccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhh--hhcccCCCcceeehhhHHHHhcchh
Q 011526 314 GSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVP 391 (484)
Q Consensus 314 ~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l--~~v~~~~~rn~~ivg~sl~~Gl~~p 391 (484)
+||+++..+++++++++++||+++++++||.||+||+++++|+++..+|+|.+ +++|+|++||.+|+|+++.+|++.-
T Consensus 320 ~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~l~~~~~d~~~~rn~~ivg~sl~~g~g~~ 399 (429)
T TIGR03616 320 YSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARIWVQNKVDLTQNGNLIMVAVTLVLGAGDF 399 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCccceeehhHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999988 6889987889999999999999752
Q ss_pred hhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCc
Q 011526 392 QYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 442 (484)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~ 442 (484)
+..++.+++||+++|+++|++||+++|++
T Consensus 400 ----------------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 400 ----------------------ALTIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred ----------------------HHHHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 12345778899999999999999999954
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=1.3e-59 Score=490.75 Aligned_cols=358 Identities=33% Similarity=0.583 Sum_probs=270.7
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH-hCCCcceEeccccchHHHHHHHHhhcccCCCCCCCc
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPV 79 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~-~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~ 79 (484)
|+++++++|.++++++|+ ++|+.++++++++++|++|++|++ +|+|+|+++|+|+.+++........ .
T Consensus 14 m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~----------~ 82 (389)
T PF00860_consen 14 MFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGM----------A 82 (389)
T ss_dssp HHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-------------
T ss_pred HHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccccc----------c
Confidence 567889999999999999 888889999999999999999999 8999999999999999833222111 1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCccch--------------hh
Q 011526 80 EKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKC--------------VE 145 (484)
Q Consensus 80 ~~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~~--------------~~ 145 (484)
+++.++|+.++|+++++|++++++++++.++|++|+|||.|+|.++++||+++.+.++++.+.. ..
T Consensus 83 ~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (389)
T PF00860_consen 83 ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLVGDGKNLG 162 (389)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---HHHHH
T ss_pred cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccccccccccccccc
Confidence 2356789999999999999999999999999999999999999999999999999988764321 23
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcccc
Q 011526 146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 225 (484)
Q Consensus 146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P 225 (484)
++..+++..+.++.+. ++++|++++++|+++||++++.+|.. |+++.+.++||+++|
T Consensus 163 ~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~~----------------~~~~~~~~~~~~~~p 219 (389)
T PF00860_consen 163 LAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGVV----------------DFSPSVSSAPWFSLP 219 (389)
T ss_dssp HHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT----------------TSSH-HHHS-SS---
T ss_pred cccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhccccc----------------ccCcccccccccccc
Confidence 4444555555555554 45689999999999999999999853 444326789999999
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccch
Q 011526 226 WPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA 305 (484)
Q Consensus 226 ~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~ 305 (484)
++++|++|.||++.+++++.+++++++|++||+.++++..++++++++++||++.+||++|+++|++|++|.|+|+ ||+
T Consensus 220 ~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~-en~ 298 (389)
T PF00860_consen 220 SPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYS-ENA 298 (389)
T ss_dssp -----------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-H-HHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCcccc-ccc
Confidence 9999999999999999999999999999999999999999977766899999999999999999999999999999 999
Q ss_pred heehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeehhhHHH
Q 011526 306 GLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIF 385 (484)
Q Consensus 306 g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~ 385 (484)
|.++.||++||++...+++++++++++||++++++.||.||+||++++++|+++.+|+|++++.|+||+||.+++++++.
T Consensus 299 g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~~r~~~iv~~~l~ 378 (389)
T PF00860_consen 299 GGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDSARNAFIVGLSLP 378 (389)
T ss_dssp HHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCccccHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred Hhcchhhh
Q 011526 386 IGLSVPQY 393 (484)
Q Consensus 386 ~Gl~~p~~ 393 (484)
+|++++.+
T Consensus 379 ~g~~i~~~ 386 (389)
T PF00860_consen 379 LGLSIAFG 386 (389)
T ss_dssp HHHH----
T ss_pred HHHHHhcc
Confidence 99988654
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.5e-28 Score=253.73 Aligned_cols=351 Identities=17% Similarity=0.201 Sum_probs=263.1
Q ss_pred ehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccc---cchHHHHHHHHhhcccCCCCCCCchhh
Q 011526 6 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGS---YTFVPSTISIILAGRFSNYSGDPVEKF 82 (484)
Q Consensus 6 i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~s---f~~i~~~~~i~~~~g~~~~~~~~~~~~ 82 (484)
.+.|-+++++ |+| ...+..+|++.++++|++++++ +|+|+.++|. .+|... ++...++.
T Consensus 38 ~VnP~IL~~a-g~~---~~av~~AT~l~a~~gs~~mgl~-An~P~alapgmglnAfFaf--tvv~~~gi----------- 99 (436)
T COG2252 38 FVNPQILGAA-GMP---VGAVFVATCLAAAIGSIAMGLY-ANLPIALAPGMGLNAFFAF--TVVLGMGL----------- 99 (436)
T ss_pred eecHHHHHhc-CCC---chhHHHHHHHHHHHHHHHHHHH-HcCchhhcchhhHHHHHHH--HHHHhcCC-----------
Confidence 4568887776 455 5678899999999999999999 8999999974 333332 22333432
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccc-------HHHHHHHHHHHhhhhhcCC---------ccc-hhh
Q 011526 83 KRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS-------VVPLISLVGFGLYEFGFPG---------VAK-CVE 145 (484)
Q Consensus 83 ~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V-------~G~~i~lIGl~l~~~~~~~---------~~~-~~~ 145 (484)
.||.++++++++|+++++++++|+|+|++|.+|... +|.++.+||+.....-..+ +.+ .+.
T Consensus 100 --~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vl 177 (436)
T COG2252 100 --SWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNAGIVVANPATLVALGDFTSPGVL 177 (436)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhCCeEEecCcceEEeecCCCchHH
Confidence 699999999999999999999999999999999854 6777777777655442222 111 345
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcccc
Q 011526 146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 225 (484)
Q Consensus 146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P 225 (484)
+++.++++++.+ ..|++ ..+++++++..+++++++|.... +.+.....|.. .|
T Consensus 178 l~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~~~~---------------~~~~~~~~p~~-~~ 230 (436)
T COG2252 178 LAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGIDVH---------------FGGLVGAPPSL-SP 230 (436)
T ss_pred HHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhccccc---------------ccccccCCCCc-cc
Confidence 677777777666 44554 78999999999999999985310 00001111111 11
Q ss_pred ccccccCc--ccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCC--CCCccCccceehhhhHHHHhhhcCCCCCcccc
Q 011526 226 WPFQWGAP--SFDAGEAFAMMMASFVALVESTGAFFAVARYASATP--MPPSVLSRGVGWQGVGILLSGLFGTVNGTSVS 301 (484)
Q Consensus 226 ~~~~~g~p--~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~--~~~~~~~r~~~adGl~~ilagl~G~~~~tt~s 301 (484)
...+.+.. ...+......+.+.+++++|++|++.+++++++..+ .+.++.+|.+.+|++++++++++|+.+.|+|.
T Consensus 231 ~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI 310 (436)
T COG2252 231 IFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALFGTSTVTAYI 310 (436)
T ss_pred hhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhcCCcchhhhh
Confidence 11111111 122455667789999999999999999999997433 34579999999999999999999999999999
Q ss_pred ccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeehh
Q 011526 302 VENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILG 381 (484)
Q Consensus 302 s~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg 381 (484)
|+...++..|.+.-..+..+.++++.+.+.| +...+|..+.++++++ . ...+++.++++||+|..+.+
T Consensus 311 -ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~AtapaLi~-v---G~lM~~~v~~id~~d~~ea~--- 378 (436)
T COG2252 311 -ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATAPALII-V---GALMLSSVKQIDWSDFTEAV--- 378 (436)
T ss_pred -hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhhHHHHH-H---HHHHHhhhccCCchhhhhhh---
Confidence 9999999988888888999999988877766 9999999999999998 3 44445777899999865543
Q ss_pred hHHHHhcchhhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccC
Q 011526 382 FSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLH 440 (484)
Q Consensus 382 ~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~ 440 (484)
|.++.... +| +.+-..+|++.|.+.+.+++....
T Consensus 379 ---------PaF~tiv~--------------mp--lTySIa~Gia~Gfi~y~i~k~~~g 412 (436)
T COG2252 379 ---------PAFLTIVM--------------MP--LTYSIADGIAFGFISYVILKVFTG 412 (436)
T ss_pred ---------HHHHHHHH--------------HH--HHHHHHhhHHHHHHHHHHHHHHhh
Confidence 77666532 44 677789999999999999988554
No 10
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.5e-21 Score=209.62 Aligned_cols=308 Identities=17% Similarity=0.228 Sum_probs=225.9
Q ss_pred ceehHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCchh
Q 011526 4 TTVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEK 81 (484)
Q Consensus 4 ~~i~vPlii~~a--~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~ 81 (484)
+.+++|.-++-+ .|.+++ .-+.++-++.++-++||.+-=.+.||.-++...+..+..+..
T Consensus 32 a~valP~ama~a~~aGv~p~-------~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~----------- 93 (554)
T COG0659 32 AAVALPLAMAFAIAAGVPPE-------AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLV----------- 93 (554)
T ss_pred HHHHhHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHH-----------
Confidence 456778766655 688884 788888999999999987766788988776665555554210
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCc------c--------------
Q 011526 82 FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV------A-------------- 141 (484)
Q Consensus 82 ~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~------~-------------- 141 (484)
.++++.++.+.+++|++++++|++|+ +++.|++|+.|+-.++.-||+.++..+++.+ .
T Consensus 94 -~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~~~ 171 (554)
T COG0659 94 -ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVL 171 (554)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhc
Confidence 24789999999999999999999998 9999999988877777888876665543221 0
Q ss_pred --chh---hhHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcC
Q 011526 142 --KCV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLI 216 (484)
Q Consensus 142 --~~~---~v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v 216 (484)
.++ .++..++.+++.+ +++ ..|.++.++++++++.++|.++... + .++ -+..+..
T Consensus 172 ~~~~~~~~~lg~~~l~il~~~----~~~------~~~~P~~liaiv~~t~i~~~~~~~~-----~-~~G----~i~~~lp 231 (554)
T COG0659 172 LTINLATLLLGLLTLAILLFL----PRL------TPRIPSPLIALVLGTLIVWIFPLDS-----L-RYG----EIPGSLP 231 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHc----cch------hhhCCcHHHHHHHHHHHHHHhcCCc-----h-hcc----cCcccCC
Confidence 011 2333333333322 322 1357889999999999999886421 0 000 0111111
Q ss_pred CCCCCccccccccccCcccch----hHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhc
Q 011526 217 DAAPWIRVPWPFQWGAPSFDA----GEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 292 (484)
Q Consensus 217 ~~~pwf~~P~~~~~g~p~f~~----~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~ 292 (484)
...||+ +.|.+++ ..+...+.++++.++|++.+.++.++..++ +.+.||++.++|++|+.+|+|
T Consensus 232 ~~~~~~--------~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~nrELiaqGiaNi~sglf 299 (554)
T COG0659 232 SGLPHF--------RLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSNRELIAQGIANIASGLF 299 (554)
T ss_pred cCCCcc--------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHhhHHHHHHHHh
Confidence 223333 4444444 455667889999999999999999998763 568899999999999999999
Q ss_pred CCCCCccccccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHH-HHHHHHhhhhhhh
Q 011526 293 GTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFL 366 (484)
Q Consensus 293 G~~~~tt~ss~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~-~fg~i~~~Gi~~l 366 (484)
|++|.+... .+.......|.+||.+.++++++++++-++ ++.++..||.+++++++++ .+.++....++.+
T Consensus 300 gg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~ 371 (554)
T COG0659 300 GGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILVGWGLLDWSLLKPL 371 (554)
T ss_pred CCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999 888888889999999999999988777665 7889999999999999987 5566655555543
No 11
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.88 E-value=4.1e-20 Score=190.75 Aligned_cols=301 Identities=15% Similarity=0.192 Sum_probs=205.9
Q ss_pred ceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCchhhh
Q 011526 4 TTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFK 83 (484)
Q Consensus 4 ~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~~~ 83 (484)
+++++-+=-+++.|+|++|.+..+++.++.+|++|++|++. .|+|++++.| ..-...+... ..+
T Consensus 37 ~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awS-tPGaAll~~~-~~~------------- 100 (395)
T TIGR00843 37 GPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWS-APGAALLVTG-FPG------------- 100 (395)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecC-chHHHHHHHh-cCC-------------
Confidence 33333344455689999999999999999999999999987 7999999988 3222222121 111
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCccchhhhHHHHHHHHHHHHHhhcc
Q 011526 84 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH 163 (484)
Q Consensus 84 ~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~~~~l~~~i~l~~~~~~ 163 (484)
.+++++.|+.+++|++.+++|++|+++|++|.+|+.+.+.++.-|.+......++...+...++... ++.....|
T Consensus 101 ~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~m----ll~~l~~~- 175 (395)
T TIGR00843 101 ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFSM----LLCWLASK- 175 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHH-
Confidence 2689999999999999999999999999999999999999887777665433333333333333222 22211222
Q ss_pred ccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCccccccccccCcccchhHHHHH
Q 011526 164 VIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAM 243 (484)
Q Consensus 164 ~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P~~~~~g~p~f~~~~i~~~ 243 (484)
++.+++++++++++|.++++..|.. |.++ +.. + +..| .|-.|+||+...+..
T Consensus 176 ------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p---~~~~P~fs~~a~~~l 227 (395)
T TIGR00843 176 ------AFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP---QFIAPDFSFAHSLNL 227 (395)
T ss_pred ------HhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---eeeCCCCCHHHHHHH
Confidence 3456799999999999999988742 1111 110 0 2223 456788887765543
Q ss_pred -HHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCC------CccccccchheehhccCCcc
Q 011526 244 -MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVN------GTSVSVENAGLLALTRVGSR 316 (484)
Q Consensus 244 -~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~------~tt~ss~n~g~i~~Tgv~SR 316 (484)
++.+++.+....-.-.++.|..+++. ..|+-+.++|++|++++.||+.+ +++.. . |--+--.-..|
T Consensus 228 ~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic-~--G~~ah~d~~rR 300 (395)
T TIGR00843 228 ALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFAGGISIGIAAITAAIC-M--GKDAHEDKDKR 300 (395)
T ss_pred HHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhccCCchhhhhHHhHHHh-c--CcccccCcCcc
Confidence 56777777666545556667666443 36899999999999999999997 33332 1 11011112233
Q ss_pred c-hHHHHHHHHHHHHHh-hHHHHHHhhCChhHHHHHHH-HHHHHHHh
Q 011526 317 R-VVQISAGFMIFFSVL-GKFGAVFASIPAPIVAALYC-LFFAYVGA 360 (484)
Q Consensus 317 ~-~~~~a~~~lill~~~-Pk~~al~~~IP~~V~gg~li-~~fg~i~~ 360 (484)
+ ..+.+|++.++++++ +.+..+++.+|.+.+..+-= .+++.+..
T Consensus 301 ~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~ 347 (395)
T TIGR00843 301 WIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAG 347 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 3 347888888899998 99999999999998865543 35565543
No 12
>PRK11660 putative transporter; Provisional
Probab=99.82 E-value=4.4e-18 Score=186.15 Aligned_cols=309 Identities=15% Similarity=0.196 Sum_probs=201.1
Q ss_pred ceehHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCchh
Q 011526 4 TTVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEK 81 (484)
Q Consensus 4 ~~i~vPlii~~a--~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~ 81 (484)
+.+.+|.-++-+ .|+++. ..+..+-+++++-+++|+.--++.||..........+..+
T Consensus 40 ~~~~iPq~mayA~lag~pp~-------~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~------------- 99 (568)
T PRK11660 40 GIIAIPLAMALAIASGVPPQ-------YGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQ------------- 99 (568)
T ss_pred HHHHHHHHHHHHHHcCCChH-------HHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHH-------------
Confidence 456778777776 577774 5688888899999999877777888876543322222222
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCc--------cc-----------
Q 011526 82 FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV--------AK----------- 142 (484)
Q Consensus 82 ~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~--------~~----------- 142 (484)
.+++.+..+.+++|++++++|++|+ +++.|++|..|+..++..+|+.+...+++.. +.
T Consensus 100 --~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~ 176 (568)
T PRK11660 100 --FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQ 176 (568)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHH
Confidence 2456677789999999999999997 8999999988877777777765544332111 00
Q ss_pred -----hh---hhHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCcccccc-Cc-
Q 011526 143 -----CV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRT-DR- 212 (484)
Q Consensus 143 -----~~---~v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~v-d~- 212 (484)
++ .+++.++++++++ +++ ..|.++.++.+++++++++.++..+ ++.+.-.......+ |-
T Consensus 177 ~l~~~~~~~~~~~~~~l~lll~~----~~~------~~~iP~~li~iiv~t~~~~~~~~~~-~~v~~vg~~~~~~~~~g~ 245 (568)
T PRK11660 177 ALPTINWGDALIGIVTLGVLILW----PRL------KIRLPGHLPALLAGTAVMGVLNLLG-GHVATIGSRFHYVLADGS 245 (568)
T ss_pred hhccCCHHHHHHHHHHHHHHHHH----Hhh------cccCchHHHHHHHHHHHHHHHhccC-CCceeecccccccccccc
Confidence 11 2334444444333 222 1245677999999999988886431 00000000000000 00
Q ss_pred CC-cC-CCCCCcccccc-ccc-cCc-ccchhH----HHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhh
Q 011526 213 AG-LI-DAAPWIRVPWP-FQW-GAP-SFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQG 283 (484)
Q Consensus 213 ~~-~v-~~~pwf~~P~~-~~~-g~p-~f~~~~----i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adG 283 (484)
.. .+ ...|-+.+|.. ..+ +.+ .+||+. +...+.++++.++|++.+..+.++..++ +.+.||++.++|
T Consensus 246 ~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~----~~d~n~EL~a~G 321 (568)
T PRK11660 246 QGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT----KHSANSELVGQG 321 (568)
T ss_pred cccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHh
Confidence 00 00 01122222310 000 000 245543 4456788899999999888888877553 457999999999
Q ss_pred hHHHHhhhcCCCCCccccccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHH
Q 011526 284 VGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL 353 (484)
Q Consensus 284 l~~ilagl~G~~~~tt~ss~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~ 353 (484)
++|+++|++|++|.+++. ....+...+|.++|.+.+++++++++.-++ ++.++..||.+++++++++
T Consensus 322 ~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll~--l~~ll~~iP~~vLa~ili~ 388 (568)
T PRK11660 322 LGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALLV--LAPLLSYLPLSAMAALLLM 388 (568)
T ss_pred HHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHH
Confidence 999999999999999997 666777889999999999998877555332 4459999999999999987
No 13
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.81 E-value=7.7e-18 Score=184.15 Aligned_cols=306 Identities=16% Similarity=0.153 Sum_probs=208.5
Q ss_pred ceehHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCchh
Q 011526 4 TTVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEK 81 (484)
Q Consensus 4 ~~i~vPlii~~a--~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~ 81 (484)
+.+.+|.-++-+ .|+++. .-+.++.+..++-+++|+.-=++.||....-..+..+..+++... .++
T Consensus 25 ~~~~iP~~~ayA~laglpp~-------~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~~~---~~~-- 92 (563)
T TIGR00815 25 GILLIPQAMAYAILAGLSPI-------YGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGLQY---LFD-- 92 (563)
T ss_pred HHHHHHHHHHHHHHcCCCch-------hhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcCCC---Ccc--
Confidence 456778777776 588874 567888889999999987777777876544333333344443211 111
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhc------CCc---------------
Q 011526 82 FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGF------PGV--------------- 140 (484)
Q Consensus 82 ~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~------~~~--------------- 140 (484)
.+..+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++..++ +..
T Consensus 93 -~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~ 170 (563)
T TIGR00815 93 -CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTLGVVISTWA 170 (563)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHH
Confidence 13466777889999999999999998 9999999988888888888876653322 210
Q ss_pred --cc----hhh---hHHHHHHHHHHHHHhhccccccCcc--ccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccc
Q 011526 141 --AK----CVE---IGLPQLVIIVFISQYLPHVIKRGKN--IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCR 209 (484)
Q Consensus 141 --~~----~~~---v~~~~l~~~i~l~~~~~~~~~~~~~--~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~ 209 (484)
.+ ++. ++..+++++.. .|++.++.++ +...+..|+.+++++++.+.++... + .
T Consensus 171 ~l~~~~~~~~~~~~i~~~~~~~l~~----~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~-~-----------~ 234 (563)
T TIGR00815 171 GLPNTHNWNWCTLVIGLVLLLFLLY----TKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKK-Q-----------G 234 (563)
T ss_pred HhhhccccchHHHHHHHHHHHHHHH----HHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCC-C-----------C
Confidence 00 222 22222222222 2332111111 1223678899999998877663210 0 0
Q ss_pred cCcCCcCCCCCCccccccccccCcccchhH----HHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhH
Q 011526 210 TDRAGLIDAAPWIRVPWPFQWGAPSFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVG 285 (484)
Q Consensus 210 vd~~~~v~~~pwf~~P~~~~~g~p~f~~~~----i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~ 285 (484)
+.. +.+.|- .+| .++.|.+||.. +...+.++++.++|++...++.++..++ +.+.||++.++|++
T Consensus 235 ~~~---~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~d~n~El~a~G~~ 303 (563)
T TIGR00815 235 VSI---LGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KIDANQELVAQGIA 303 (563)
T ss_pred eEE---EeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHhhHH
Confidence 111 111111 122 23345566543 4456889999999999999999887653 45889999999999
Q ss_pred HHHhhhcCCCCCccccccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHH
Q 011526 286 ILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL 353 (484)
Q Consensus 286 ~ilagl~G~~~~tt~ss~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~ 353 (484)
|+++|+||++|.+... .+..+...+|.++|.+.++++++++++.++ ++.++..+|.+++++++++
T Consensus 304 N~~~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~ 368 (563)
T TIGR00815 304 NIVGSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIIS 368 (563)
T ss_pred HHHHHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHH
Confidence 9999999999999888 778888889999999999999887776555 5679999999999999998
No 14
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.69 E-value=1.2e-14 Score=148.09 Aligned_cols=301 Identities=20% Similarity=0.262 Sum_probs=204.1
Q ss_pred ceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhh-cccCCCCCCCchhh
Q 011526 4 TTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA-GRFSNYSGDPVEKF 82 (484)
Q Consensus 4 ~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~-~g~~~~~~~~~~~~ 82 (484)
+++++-+-.+++.|++++|....+-+..+..|+.|+.-++. +|.|++.+=| .|....+... .+
T Consensus 21 g~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWS---tPGaAlL~~~~~~------------ 84 (378)
T PF03594_consen 21 GPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWS---TPGAALLATSLPG------------ 84 (378)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcc---hHHHHHHHHhccC------------
Confidence 33444444455689999999999999999999999999997 8999966532 2222222221 12
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCccchhhhHHHHHHHHHHHHHhhc
Q 011526 83 KRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLP 162 (484)
Q Consensus 83 ~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~~~~l~~~i~l~~~~~ 162 (484)
.+++++.|+.+++|++.+++|.+|+++|+.|.+|+.+...++.-+-+...-..++...++..+....++.-++. |
T Consensus 85 -~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ml~~~l~~----~ 159 (378)
T PF03594_consen 85 -YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGPMLAVFLLA----R 159 (378)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----H
Confidence 36899999999999999999999999999999999887777666555444344444444444443333333222 2
Q ss_pred cccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCccccccccccCcccchhHHHH
Q 011526 163 HVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFA 242 (484)
Q Consensus 163 ~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P~~~~~g~p~f~~~~i~~ 242 (484)
+ +.++++++..+++|.++++..|.. +..+ +. -++..| .|-.|+||+..++.
T Consensus 160 r-------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~~--~~~~~p---~~~~P~Fs~~a~v~ 210 (378)
T PF03594_consen 160 R-------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA-LQ--LSLAHP---VFTTPEFSWSALVS 210 (378)
T ss_pred H-------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc-cc--ccccee---EEECCcccHHHHHH
Confidence 2 346789999999999998877642 1111 11 122233 56679999988776
Q ss_pred H-HHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehh---ccC-Cccc
Q 011526 243 M-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLAL---TRV-GSRR 317 (484)
Q Consensus 243 ~-~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~---Tgv-~SR~ 317 (484)
+ ++.+++.+..--..-.++-|..+- ++..|+-+...|+++++.+.||+.+..-.. -.+.+-.- -.. ..||
T Consensus 211 lalPL~ivtmasQnlpG~aVL~a~GY----~~p~~~~~~~tGl~s~l~ApfGg~~~nlAa-itaAIc~g~eah~dp~rRy 285 (378)
T PF03594_consen 211 LALPLFIVTMASQNLPGIAVLRAAGY----QPPVNPLITVTGLASLLAAPFGGHAVNLAA-ITAAICAGPEAHPDPSRRY 285 (378)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHcCC----CCCchHHHHHHHHHHHHHhhhchhhhHHHH-HHHHHHcCCccCCCcccch
Confidence 5 678887777655555566666553 456788999999999999999998543222 22221111 122 3444
Q ss_pred h-HHHHHHHHHHHHHh-hHHHHHHhhCChhHHHHHHH-HHHHHHH
Q 011526 318 V-VQISAGFMIFFSVL-GKFGAVFASIPAPIVAALYC-LFFAYVG 359 (484)
Q Consensus 318 ~-~~~a~~~lill~~~-Pk~~al~~~IP~~V~gg~li-~~fg~i~ 359 (484)
. .+.+|++.++++++ +.+..++...|.+.+..+-= .+++.+.
T Consensus 286 ~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~ 330 (378)
T PF03594_consen 286 IAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG 330 (378)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4 47788888888887 78899999999988755433 2445443
No 15
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.59 E-value=4.9e-15 Score=148.01 Aligned_cols=243 Identities=19% Similarity=0.220 Sum_probs=160.0
Q ss_pred HHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCc---c--------------------c--hh---hhHHHHHHHH
Q 011526 103 LGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---A--------------------K--CV---EIGLPQLVII 154 (484)
Q Consensus 103 lg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~---~--------------------~--~~---~v~~~~l~~~ 154 (484)
+|++|+ +++.+++|..|+..++..+|+.++..+++.+ . + ++ .++..+++++
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 367787 9999999988888888888876655433211 0 0 11 1112222222
Q ss_pred HHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCc-CCcCCCCCCccccc-cccccC
Q 011526 155 VFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR-AGLIDAAPWIRVPW-PFQWGA 232 (484)
Q Consensus 155 i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~-~~~v~~~pwf~~P~-~~~~g~ 232 (484)
... ++.++. ++.+...+.+..++.++++.++++..+... . .++. .+.....|.+.+|. ..+|+.
T Consensus 80 ~~~-~~~~~~-~~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-----------~v~~~~~i~~~lp~~~~p~~~~~~~~ 145 (280)
T PF00916_consen 80 LII-RLLPKR-LPSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-----------GVAIVGEIPSGLPPPSLPSFDISWSL 145 (280)
T ss_pred hhh-hhhhhh-ccccccccccccceeeehhhhhhhhhhhcc-c-----------cccccccccccCccccCccccccccc
Confidence 221 122210 011223456678888999988887774311 0 1121 11112344445553 112211
Q ss_pred cccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehhcc
Q 011526 233 PSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTR 312 (484)
Q Consensus 233 p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~Tg 312 (484)
-...+...+.++++..+|++.+.++.++..++ +.|.||+++++|++|+++|++|++|.+... .+..+...+|
T Consensus 146 ---~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~~~~~G 217 (280)
T PF00916_consen 146 ---ILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAVNYRAG 217 (280)
T ss_pred ---ccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhccccccccc-ccchHHHhcC
Confidence 12345566889999999999998888876543 458999999999999999999999999998 8888888999
Q ss_pred CCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHH-HHHHHHhhhhhhhhhcc
Q 011526 313 VGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCN 370 (484)
Q Consensus 313 v~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~-~fg~i~~~Gi~~l~~v~ 370 (484)
.+||.+.++++++++++-++ ++.++..+|.+++++++++ .+.++....++.+.+.+
T Consensus 218 a~t~~s~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~ 274 (280)
T PF00916_consen 218 ARTRLSGLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVS 274 (280)
T ss_pred cceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCC
Confidence 99999999999887665444 4569999999999999997 55666665555555433
No 16
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=2.1e-12 Score=129.19 Aligned_cols=292 Identities=21% Similarity=0.269 Sum_probs=196.9
Q ss_pred cceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhh-cccCCCCCCCchh
Q 011526 3 GTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA-GRFSNYSGDPVEK 81 (484)
Q Consensus 3 ~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~-~g~~~~~~~~~~~ 81 (484)
+++.++-+--+++.|.+++|++..+.+-.+..|+.|+.-++. .|.|++.+=| .|....+..+ .+
T Consensus 35 ~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWS---TPG~all~asl~g----------- 99 (402)
T COG3135 35 ASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWS---TPGAALLVASLGG----------- 99 (402)
T ss_pred CccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeec---CccHHHHHhccCC-----------
Confidence 344454444556689999999999999999999999999987 8999976632 2322223322 22
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCccchhhhHHHHHHHHHHHHHhh
Q 011526 82 FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYL 161 (484)
Q Consensus 82 ~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~~~~l~~~i~l~~~~ 161 (484)
.++.++.|+.+++|.+.++.|.+|.++|+.+.+||.+--.++.-|=+...-.+++...++..+.+..++.-+++
T Consensus 100 --~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~lpmv~~~ll~---- 173 (402)
T COG3135 100 --LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLVLPMVLAYLLA---- 173 (402)
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH----
Confidence 36899999999999999999999999999999999876655554444443344454545544444333332222
Q ss_pred ccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCccccccccccCcccchhHHH
Q 011526 162 PHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAF 241 (484)
Q Consensus 162 ~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P~~~~~g~p~f~~~~i~ 241 (484)
|. +-..++++..+++|..++...|..+ . .| ..+-.+.| .|-.|+|++.+++
T Consensus 174 r~-------f~pr~aV~aalvvgv~va~~~G~~~---~----------~~------~~~~~~~p---~~v~P~Fs~~A~l 224 (402)
T COG3135 174 RV-------FAPRYAVIAALVVGVLVAALLGDLH---T----------AL------VALEISTP---TWVTPEFSFAAML 224 (402)
T ss_pred HH-------cCchHHHHHHHHHHHHHHHHhCccc---c----------cc------cccccCcc---eeeCCcccHHHHH
Confidence 22 2357999999999999999887431 1 11 12223444 6778999998877
Q ss_pred HH-HHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehhc---cC-Ccc
Q 011526 242 AM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALT---RV-GSR 316 (484)
Q Consensus 242 ~~-~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~T---gv-~SR 316 (484)
.. ++.+++.+..--..-.++=|..+- ++..+--+.+.|+.+++++.||+...+=-- -++.+..-- -. ..|
T Consensus 225 ~lalPL~lvtmasQN~pGiAvLka~gY----~pp~~pl~~~TGl~sll~ApfG~~t~nLaA-ItAAic~gpdaHpD~~rr 299 (402)
T COG3135 225 SLALPLFLVTMASQNLPGIAVLKAAGY----QPPPSPLIVATGLASLLSAPFGGHTVNLAA-ITAAICTGPDAHPDPARR 299 (402)
T ss_pred HHhHHHHHHHHHhccCccceeehhcCC----CCCCchHHHHhHHHHHHhcccccceecHHH-HHHHHhcCCCCCCChHHH
Confidence 65 578887776555554555555543 335566789999999999999987432211 111111111 11 223
Q ss_pred c-hHHHHHHHHHHHHHh-hHHHHHHhhCChhHHHH
Q 011526 317 R-VVQISAGFMIFFSVL-GKFGAVFASIPAPIVAA 349 (484)
Q Consensus 317 ~-~~~~a~~~lill~~~-Pk~~al~~~IP~~V~gg 349 (484)
| ....+|.+-+++++| +.+.+++...|.+.+..
T Consensus 300 y~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~ 334 (402)
T COG3135 300 YTAALVAGIFYLLAGLFGGALVGLMAALPASLIAA 334 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 3 347777888888877 78999999999987644
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.7e-11 Score=136.05 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=205.7
Q ss_pred ceehHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHH-H-hhcccCCCCCCCc
Q 011526 4 TTVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI-I-LAGRFSNYSGDPV 79 (484)
Q Consensus 4 ~~i~vPlii~~a--~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i-~-~~~g~~~~~~~~~ 79 (484)
+.+.+|--++.+ .|+++ ...+..+-++.++-.+||+--.+-.||.. .+.-++.- . ..... ..+.
T Consensus 91 g~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~v~~----~~~~ 158 (665)
T KOG0236|consen 91 GSLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQVVLS----EAPS 158 (665)
T ss_pred eeeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHHHhc----cCCC
Confidence 345667666665 56776 47788888999999999988888777632 22211110 0 11100 0000
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhh------hcCCcc------------
Q 011526 80 EKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEF------GFPGVA------------ 141 (484)
Q Consensus 80 ~~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~------~~~~~~------------ 141 (484)
.+....++.+...++++|++|+++|++|+ +.+.+++|..++-.++...++.+.-. |+++..
T Consensus 159 ~~~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~ 237 (665)
T KOG0236|consen 159 NDIATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIV 237 (665)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEee
Confidence 01124688899999999999999999998 99999999655444444444433322 222111
Q ss_pred -----c------hhhhHHHHHHHHHHHHH-hhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccc
Q 011526 142 -----K------CVEIGLPQLVIIVFISQ-YLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCR 209 (484)
Q Consensus 142 -----~------~~~v~~~~l~~~i~l~~-~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~ 209 (484)
+ .+.+++..+++. .+.+ +.++. ++.-.+...+.-++.+++++++++.+...+.+.. ..
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~l~~L-~~~k~~~~~~-~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~ 307 (665)
T KOG0236|consen 238 FDLLANLPKTLATLVLSLIFLVVL-LLTKELNPKF-KKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------II 307 (665)
T ss_pred HHhhhcccccchhhhhHHHHHHHH-HHHHHhhhhh-cccceeecccHHHHHHHHHHHHHHHhccccccCC--------ee
Confidence 0 122333332222 2222 22211 1111224556689999999999998865321100 11
Q ss_pred cCcCCcCCCCCCccccccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHh
Q 011526 210 TDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLS 289 (484)
Q Consensus 210 vd~~~~v~~~pwf~~P~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ila 289 (484)
++ +.....|..++|. +.+....+...+.++++.+.|+++--++.++..+. .-+-||+++|-|++|+++
T Consensus 308 ~~--~i~~g~~~~~lp~------~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y----~vd~nqELiAlG~~Ni~s 375 (665)
T KOG0236|consen 308 VG--EIPRGFPPPSLPP------LSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGY----KVDSNQELIALGISNILS 375 (665)
T ss_pred ec--cCCCCCCCCCCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----eeCCChHHHHHHHHHHhh
Confidence 11 1111222233331 12223456668899999999999888888877543 357899999999999999
Q ss_pred hhcCCCCCccccccchheehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHH-HHH-HHHhhhhhhhh
Q 011526 290 GLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFA-YVGAGGLSFLQ 367 (484)
Q Consensus 290 gl~G~~~~tt~ss~n~g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~-~fg-~i~~~Gi~~l~ 367 (484)
++|++.|.+... .+..+...+|++++.+..+.++..++.-++ ++.++..+|.++++++.+. +.+ ++-...++.+.
T Consensus 376 Sff~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~~--l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lw 452 (665)
T KOG0236|consen 376 SFFGCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALLF--LGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLW 452 (665)
T ss_pred hhhceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhhe
Confidence 999999999999 999999999999999987777655444333 5669999999999999887 444 44444444444
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.42 E-value=5.2e-05 Score=86.18 Aligned_cols=319 Identities=14% Similarity=0.151 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEeccccchHH---HHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHH
Q 011526 26 VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVP---STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIV 102 (484)
Q Consensus 26 li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~---~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ga~~vaGlv~il 102 (484)
=++=++++++++.++.+++|..--++.|.+..... .+..++..++. + =++...=.-+.++++.++
T Consensus 402 gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~------~------yl~~~~WigiW~~~~~~l 469 (900)
T TIGR00834 402 GVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGL------E------YLVGRVWIGLWLVLLVLL 469 (900)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCC------c------hHHHHHHHHHHHHHHHHH
Confidence 34678899999999999997665566676543332 22222222211 1 122222235677788888
Q ss_pred HHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCc---------------------------------------c--
Q 011526 103 LGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---------------------------------------A-- 141 (484)
Q Consensus 103 lg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~---------------------------------------~-- 141 (484)
++.+.. ..+.|+++.-.-=.+-++|++.-+..+++.+ +
T Consensus 470 la~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (900)
T TIGR00834 470 LVATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGT 548 (900)
T ss_pred HHHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccc
Confidence 888876 7888999887655555555543332222100 0
Q ss_pred ----ch---hhhHHHHHHH---HHHHHHhhccccc------cCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCc
Q 011526 142 ----KC---VEIGLPQLVI---IVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQ 205 (484)
Q Consensus 142 ----~~---~~v~~~~l~~---~i~l~~~~~~~~~------~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~ 205 (484)
++ ...++..+++ +..+..+++++.+ +.|+.+.-+++.+++++-+.+.+.++... .+.-+
T Consensus 549 ~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~--~~kl~--- 623 (900)
T TIGR00834 549 LGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTY--TQKLS--- 623 (900)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCc--ccccC---
Confidence 00 1122322222 3333444444421 23566677899999999888888765211 00000
Q ss_pred cccccCcCCc-CCCCCCccccccccccCcccc-hhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhh
Q 011526 206 ASCRTDRAGL-IDAAPWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQG 283 (484)
Q Consensus 206 ~~~~vd~~~~-v~~~pwf~~P~~~~~g~p~f~-~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adG 283 (484)
..-.|.+. -..-.|+--|.......|.+. +.++++.+.+++.-++|+-=+..-+++.. .+..+....+=.++.-|
T Consensus 624 --Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e-~kLkKgsgyH~Dllllg 700 (900)
T TIGR00834 624 --VPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKE-RKLKKGSGFHLDLLLVV 700 (900)
T ss_pred --CCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCcc-ccCCCCcccchHHHHHH
Confidence 00012210 011356532211000012221 34566677788888888754433333321 22334456777889999
Q ss_pred hHHHHhhhcCCCCCccccccchheeh----------------hccCCc-cchHHHHHHHHHHHHHhhHHHHHHhhCChhH
Q 011526 284 VGILLSGLFGTVNGTSVSVENAGLLA----------------LTRVGS-RRVVQISAGFMIFFSVLGKFGAVFASIPAPI 346 (484)
Q Consensus 284 l~~ilagl~G~~~~tt~ss~n~g~i~----------------~Tgv~S-R~~~~~a~~~lill~~~Pk~~al~~~IP~~V 346 (484)
+-+.++|++|-...++..-++.-.+. ..+|+. |....+.++ |+.++++ ...++..||.||
T Consensus 701 ~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~l-Liglsv~--~~PvL~~IP~aV 777 (900)
T TIGR00834 701 GMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAV-LVGLSIL--MEPILKRIPLAV 777 (900)
T ss_pred HHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHH-HHHHHHH--HHHHHhhccHHH
Confidence 99999999998766555222221110 123333 333344444 3323222 344899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc
Q 011526 347 VAALYCLFFAYVGAGGLSFLQFC 369 (484)
Q Consensus 347 ~gg~li~~fg~i~~~Gi~~l~~v 369 (484)
+.|+.+| .|.-...|.|...++
T Consensus 778 L~GvFlY-MGv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 778 LFGIFLY-MGVTSLSGIQLFDRL 799 (900)
T ss_pred HHHHHHH-HHHhhcccCHHHHHH
Confidence 9999999 466666777766544
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.35 E-value=0.00013 Score=81.32 Aligned_cols=338 Identities=12% Similarity=0.124 Sum_probs=185.5
Q ss_pred ccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchH---HHHHHHHhhcccCCCCCCC
Q 011526 2 LGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFV---PSTISIILAGRFSNYSGDP 78 (484)
Q Consensus 2 ~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i---~~~~~i~~~~g~~~~~~~~ 78 (484)
+.++...-+..++.++-.. +-..=++-+++.+.++.++.+++|..--+++|++.-.+ -.+..++..++. +
T Consensus 370 Yfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~------d 442 (876)
T KOG1172|consen 370 YFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL------D 442 (876)
T ss_pred HHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC------c
Confidence 3445555555555444322 33455678899999999999999877777788654322 222233333321 0
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcC--------------------
Q 011526 79 VEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP-------------------- 138 (484)
Q Consensus 79 ~~~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~-------------------- 138 (484)
-++--.=-.+...++.++++.+.. ..+.++|+...-=.+-++|.+..+..++.
T Consensus 443 ------yl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~ 515 (876)
T KOG1172|consen 443 ------YLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPG 515 (876)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcc
Confidence 122223335677778888888876 88888888765433434444322222211
Q ss_pred -----Ccc--------------chhhhHHHHHHHHHHHHHhhccccc------cCccccchhhHHHHHHHHHHHHHHHhh
Q 011526 139 -----GVA--------------KCVEIGLPQLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTV 193 (484)
Q Consensus 139 -----~~~--------------~~~~v~~~~l~~~i~l~~~~~~~~~------~~~~~~r~~aiLigiv~G~~~a~~~g~ 193 (484)
... ++..++++-.+..+.+..++|++.+ +.|.+++-+++.+++++-..+....+.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~ 595 (876)
T KOG1172|consen 516 ADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGS 595 (876)
T ss_pred cccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccc
Confidence 000 0112233333334455556666542 235566678999999999988887753
Q ss_pred cCCCCCCCccCccccccCcCCcCCC-CCCccccccccccCcccc-hhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCC
Q 011526 194 GGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMP 271 (484)
Q Consensus 194 ~~~~~~~~~~~~~~~~vd~~~~v~~-~pwf~~P~~~~~g~p~f~-~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~ 271 (484)
. .+++-+ .+.-+...-.. -.|+-.|.. ..|.++ ..++++.+.+++.-++|+-=+..-+++. +.+..+
T Consensus 596 ~--~~~kl~-----vp~~~~~t~~~~rgw~v~~~~---~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e~kLKK 664 (876)
T KOG1172|consen 596 V--ETPKLP-----VPSVFPPTWPFDRGWFVPPFG---KNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-ENKLKK 664 (876)
T ss_pred c--CCCccc-----cCcCCCCCCcccCCeeeCCCC---CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-cccCCC
Confidence 1 111100 00111110011 245544411 112111 3455566677777788875443333322 123344
Q ss_pred CccCccceehhhhHHHHhhhcCCCCCccccccchheehh----------------ccCCc-cchHHHHHHHHHHHHHhhH
Q 011526 272 PSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLAL----------------TRVGS-RRVVQISAGFMIFFSVLGK 334 (484)
Q Consensus 272 ~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~----------------Tgv~S-R~~~~~a~~~lill~~~Pk 334 (484)
....+=.++.-|+-+.++|++|=....+...++.-.+.. -+|.. |....+.+++.. +++ .
T Consensus 665 gsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg-ls~--~ 741 (876)
T KOG1172|consen 665 GSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG-LSV--L 741 (876)
T ss_pred CcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH-HHH--H
Confidence 556777899999999999999988777665455543321 12222 333344444433 332 2
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 011526 335 FGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF 368 (484)
Q Consensus 335 ~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~ 368 (484)
...++..||.||+.|+.+| .|.=...|.|..++
T Consensus 742 ~~pvL~~IP~~VL~GvFlY-Mgv~SL~Gnqf~eR 774 (876)
T KOG1172|consen 742 LLPVLKLIPMPVLYGVFLY-MGVSSLPGNQFFER 774 (876)
T ss_pred HHHHHhhccHHHHHHHHHH-HhhccCCccHHHHH
Confidence 4558999999999999998 35455556665554
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.60 E-value=0.012 Score=60.38 Aligned_cols=312 Identities=13% Similarity=0.124 Sum_probs=168.8
Q ss_pred hhcCCChHHHHHHHHHHHHHHHH--HHHHHHHh--CCCcceEeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHH
Q 011526 14 PQMGGGNEEKAKVIQTLLFVAGL--NTLLQSLF--GTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAI 89 (484)
Q Consensus 14 ~a~gl~~~~~~~li~~tl~~sGi--~Tllq~~~--G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 89 (484)
+.+|++++-...-+-.-++..++ .-+.-+++ .++++=-+||--..++. +++. | +-+.+
T Consensus 85 ~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P~anLAGthgPmIpLIp~---ivaa-G--------------gHPLa 146 (492)
T PF11840_consen 85 APLGLSPEFVIENVRYELLIAALLFVILFSGFLNPRANLAGTHGPMIPLIPL---IVAA-G--------------GHPLA 146 (492)
T ss_pred hccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCccccccCCCCCcchhhHH---HHHc-C--------------CCcHH
Confidence 34788876444333333444443 22222332 35666666665555552 2322 2 12334
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCC---cc---chhhhHHHHHHHHHHHHHhhcc
Q 011526 90 QGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG---VA---KCVEIGLPQLVIIVFISQYLPH 163 (484)
Q Consensus 90 ~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~---~~---~~~~v~~~~l~~~i~l~~~~~~ 163 (484)
+| +..|++-++++++|--.|+.++-..-|.|..+..+|+.=.-..++. +. +..+++++.+.+.+++..|+.+
T Consensus 147 lg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k 224 (492)
T PF11840_consen 147 LG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAK 224 (492)
T ss_pred HH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 44 4568888899999887899999999888877666665211111111 11 1235677777776676666655
Q ss_pred ccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcc------ccccccccCcccc-
Q 011526 164 VIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIR------VPWPFQWGAPSFD- 236 (484)
Q Consensus 164 ~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~------~P~~~~~g~p~f~- 236 (484)
+. | |..++-++-+++-++++.+|.. .||... ...|-++ =-.-.+.|+|.++
T Consensus 225 ~~---K---rWLaIPl~~~~a~~~a~~lGa~---------------f~f~t~-pglp~lnP~YWWge~tGw~LglP~~~h 282 (492)
T PF11840_consen 225 IE---K---RWLAIPLCSILAGVLAFALGAP---------------FEFTTE-PGLPNLNPMYWWGEETGWQLGLPTLEH 282 (492)
T ss_pred hc---c---chhhhhHHHHHHHHHHHHcCCC---------------ceeecC-CCCCCCCCcccccCCcccccCCCcHHH
Confidence 42 2 4567767777777778888752 222210 0111111 1112345667543
Q ss_pred hhHHHHHHHHHHH-HHHHhHhHHHHHHHHhcCCC--CCCccCccceehhhhHHHHhhhcCCCCCccccccchhe-ehhcc
Q 011526 237 AGEAFAMMMASFV-ALVESTGAFFAVARYASATP--MPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGL-LALTR 312 (484)
Q Consensus 237 ~~~i~~~~~~~lv-~~~es~g~~~av~~~~~~~~--~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~-i~~Tg 312 (484)
.-+.+++.+.+.. =.-|.+|+- ..++.+-.+. +..-+++..+....+=+++++.+|+...+++- ..--+ .++.|
T Consensus 283 fiav~PFAiLAVaMWSpDflghr-vFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW-gTymIPaaIaK 360 (492)
T PF11840_consen 283 FIAVLPFAILAVAMWSPDFLGHR-VFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW-GTYMIPAAIAK 360 (492)
T ss_pred HHHhccHHHHHHHHhCchHHHHH-HHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccc-hhhhhhHHHhc
Confidence 2223333222221 244666653 3444432111 12237888999999999999999998665543 22111 12233
Q ss_pred CCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHH-HHHHHHhhhhhhhhhccc
Q 011526 313 VGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCNL 371 (484)
Q Consensus 313 v~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~-~fg~i~~~Gi~~l~~v~~ 371 (484)
.-=+--.+..++++++.++..- -.=++.- .||+--++++ .|--+.-.|+++.++-+-
T Consensus 361 RPIpggAiLtg~~Ci~~av~Gy-PMdlavw-~Pvl~vALlvGVflPLleAGmqm~r~~k~ 418 (492)
T PF11840_consen 361 RPIPGGAILTGLLCIVAAVWGY-PMDLAVW-PPVLRVALLVGVFLPLLEAGMQMTRKGKT 418 (492)
T ss_pred CCCCchHHHHHHHHHHHHHhcC-cchhhhc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3333335677777777776641 1112233 4677666666 777788899998875443
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.48 E-value=0.0011 Score=71.70 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=1.2
Q ss_pred CccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCC-CCCccccccccccCcccc-hhHHHHHHH
Q 011526 168 GKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMM 245 (484)
Q Consensus 168 ~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~-~pwf~~P~~~~~g~p~f~-~~~i~~~~~ 245 (484)
.|+.++-+++.|++++-..+....+.. .+. -+ ..-++.+.-.+ -+|+--|. ...|.+. ..++++.+.
T Consensus 276 vR~~isDf~v~iaI~~~~~~~~~~~~~--~~k-L~-----vp~~f~pt~~~~r~W~v~p~---~~~p~w~~~aA~~pall 344 (510)
T PF00955_consen 276 VREIISDFGVPIAILIMTLVDYLFGVD--TPK-LN-----VPSSFKPTSPGKRGWFVNPF---GSLPWWAIFAAIIPALL 344 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHhccc--ccc-cC-----CCCCCCCCCCCCCCeecCcc---cCCCHHHHHHHHHHHHH
Confidence 466777789999999888877665521 000 00 00122221111 34654442 1122222 244555566
Q ss_pred HHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheeh----------------
Q 011526 246 ASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA---------------- 309 (484)
Q Consensus 246 ~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~---------------- 309 (484)
+++.-++|.-=+..-+++. +.+..+....+=.++.-|+-+.++|++|-....+...++.-.+.
T Consensus 345 l~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~ 423 (510)
T PF00955_consen 345 LTILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPK 423 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCe
Confidence 7777777754332222222 12334455677788999999999999997766554323322111
Q ss_pred hccCCccch-HHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 011526 310 LTRVGSRRV-VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF 368 (484)
Q Consensus 310 ~Tgv~SR~~-~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~ 368 (484)
..+|+.-|+ .....+ |+ ++...+..++..||.||+.|+.++ .|.-...|.|..++
T Consensus 424 i~~V~EqRvT~l~~~~-Li--gls~~l~pvL~~IP~~VL~GvFly-mG~~sL~gnq~~~R 479 (510)
T PF00955_consen 424 IVGVREQRVTGLLVHL-LI--GLSLFLLPVLKLIPMPVLYGVFLY-MGVTSLSGNQFFER 479 (510)
T ss_dssp ---------------------------------------------------------TTT
T ss_pred eCeEEEecccHHHHHH-HH--HHHHHHHHHHHHhhHHHHHHHHHh-heeeeecCccHHHH
Confidence 123333333 333333 33 233335668999999999999998 33444444444443
No 22
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=83.32 E-value=12 Score=41.44 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheeh--hccCC---
Q 011526 240 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA--LTRVG--- 314 (484)
Q Consensus 240 i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~--~Tgv~--- 314 (484)
++.-+.++++.+=|+++- ++.++-++ ..|+.+.=++.++.++||+.+...+. ...+... .+-++
T Consensus 25 l~AGltva~valP~ama~----a~~aGv~p------~~GLyas~i~~~v~alfGgs~~~i~G-Pt~a~~~v~a~~i~~~~ 93 (554)
T COG0659 25 LLAGLTVAAVALPLAMAF----AIAAGVPP------EAGLYASIVAGIIYALFGGSRGLISG-PTGAFAVVLAAVIASLV 93 (554)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHcCCCH------HHHHHHHHHHHHHHHHHcCCccceec-cchhhHHHHHHHHHHHH
Confidence 345566777777777764 44555332 57889999999999999999877444 3322211 11122
Q ss_pred ------ccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhccc
Q 011526 315 ------SRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 371 (484)
Q Consensus 315 ------SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~ 371 (484)
.-.....+|++.+++|++ |++.++..||.||+-|.+-=.--.+....+..+...+.
T Consensus 94 ~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 94 ETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 122357788899999987 89999999999999888776544555555555554444
No 23
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=80.45 E-value=18 Score=40.10 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchhee-------hhcc
Q 011526 240 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLL-------ALTR 312 (484)
Q Consensus 240 i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i-------~~Tg 312 (484)
++.-+.++++.+-|+++- +..++-++ .-|+.+--+..++.++||+.+..... ...... +.-+
T Consensus 18 i~aGltv~~~~iP~~~ay----A~laglpp------~~GLysa~~~~iv~alfGss~~~i~G-p~a~~sl~~~~~v~~~~ 86 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMAY----AILAGLSP------IYGLYTSFVPPFIYALFGTSRDIAIG-PVAVMSLLLGSVIARVG 86 (563)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHcCCCc------hhhhHHHHHHHHHhheecCCCcccCC-HHHHHHHHHHHHHHHhc
Confidence 345567777777787764 45555432 35689999999999999999887775 322211 1112
Q ss_pred CCcc----------chHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhh
Q 011526 313 VGSR----------RVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQ 367 (484)
Q Consensus 313 v~SR----------~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~ 367 (484)
.... .....+|+++++++++ |++.+...+|.||+.|.+.-.--.+...-++.+.
T Consensus 87 ~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~ 150 (563)
T TIGR00815 87 LQYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLL 150 (563)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 4567889999999987 7999999999999988877655555544444443
No 24
>PRK11660 putative transporter; Provisional
Probab=64.26 E-value=41 Score=37.34 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehhc-------c
Q 011526 240 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALT-------R 312 (484)
Q Consensus 240 i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~T-------g 312 (484)
++.-+.++++..-|+++- +..++.++ .-|+.+--+++++.++||+.+..... .......+. +
T Consensus 33 ~iAGltv~~~~iPq~may----A~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~G-p~a~~~~~~~~~~~~~~ 101 (568)
T PRK11660 33 LIAGITVGIIAIPLAMAL----AIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSG-PTAAFVVILYPVSQQFG 101 (568)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccC-hhHHHHHHHHHHHHHhh
Confidence 455567778888888764 45566433 22799999999999999999887765 332211111 1
Q ss_pred CC-ccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhh
Q 011526 313 VG-SRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 366 (484)
Q Consensus 313 v~-SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l 366 (484)
.. .-.....+|++.++++++ |++.+...||.||+.|.+.-.--.+....++.+
T Consensus 102 ~~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~ 155 (568)
T PRK11660 102 LAGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDF 155 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112356888899999987 699999999999998877654334444444444
No 25
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.39 E-value=26 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=34.2
Q ss_pred cCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHH
Q 011526 312 RVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVG 359 (484)
Q Consensus 312 gv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~ 359 (484)
+--+|.+.+.++++.+++|++. .++.=|....++++-++-|.+.
T Consensus 29 r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfiv 72 (175)
T KOG4085|consen 29 RWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIV 72 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHH
Confidence 4457888899999988888765 7777888888888877666554
No 26
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=52.32 E-value=37 Score=35.63 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=69.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccce----ehhhhHHHHhhhcCCCCCccccccchheeh
Q 011526 234 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV----GWQGVGILLSGLFGTVNGTSVSVENAGLLA 309 (484)
Q Consensus 234 ~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~----~adGl~~ilagl~G~~~~tt~ss~n~g~i~ 309 (484)
+++++.+..-++..++...-+..-+...++..+.. +++....+ ++.|+.++.=++.==.|..+.- +--|..-
T Consensus 2 d~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s---~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AW-StPGaAl 77 (378)
T PF03594_consen 2 DFSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGAS---PAQIASWLFALYLGMGLTSILLSLRYRMPIVTAW-STPGAAL 77 (378)
T ss_pred CCcHHHHHHHHHHHHhhccchHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-chHHHHH
Confidence 34556666666667777777776666666665532 23444433 4455556655555445554443 2222111
Q ss_pred hccCCccc-------hHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHH
Q 011526 310 LTRVGSRR-------VVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYC 352 (484)
Q Consensus 310 ~Tgv~SR~-------~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li 352 (484)
+....... ++++++++++++|+.+.|..++..||.++..+++-
T Consensus 78 L~~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA 127 (378)
T PF03594_consen 78 LATSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA 127 (378)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 11111111 26788899999999999999999999998877654
No 27
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=46.41 E-value=54 Score=34.76 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCC-CCccCccceehhhhHHHHhhhcCCCCCccccccchh--eeh--hc
Q 011526 237 AGEAFAMMMASFVALVESTGAFFAVARYASATPM-PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAG--LLA--LT 311 (484)
Q Consensus 237 ~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~-~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g--~i~--~T 311 (484)
.+.+..-++..++....+..-+..-.+..+-++. ...-+.--.++.|+++++=++.==.|....- +--| ++. ..
T Consensus 21 ~s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~aw-StPGaAll~~~~~ 99 (395)
T TIGR00843 21 PPTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAW-SAPGAALLVTGFP 99 (395)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-CchHHHHHHHhcC
Confidence 3455566667777777777766666666553321 1233444556667777766666566666555 2222 221 11
Q ss_pred cCCccc---hHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHH
Q 011526 312 RVGSRR---VVQISAGFMIFFSVLGKFGAVFASIPAPIVAALY 351 (484)
Q Consensus 312 gv~SR~---~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~l 351 (484)
+..=.. ++++++++++++++.+.|..+...||.++.++++
T Consensus 100 ~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 100 GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 222112 3678888889999999999999999999999888
No 28
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.68 E-value=1e+02 Score=30.94 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=34.3
Q ss_pred hhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 011526 332 LGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 372 (484)
Q Consensus 332 ~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~ 372 (484)
.+.+.+++..||.-++.|.-+. -+++=+.|+..+-+.-++
T Consensus 163 ~~~v~~il~~iP~~v~~Gl~va-ggmLPAvGfAmLl~~m~~ 202 (265)
T TIGR00822 163 QSAVQAMLKAIPEVVTHGLQIA-GGIIVVVGYAMVLRMMFK 202 (265)
T ss_pred HHHHHHHHHHCHHHHHHHHHHH-HhhHHHHHHHHHHHHHhh
Confidence 4678899999999999998886 788889999999877775
No 29
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=33.76 E-value=4.9e+02 Score=27.32 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCcccHHHH
Q 011526 93 LIVASTLQIVLGFSGLWRNVTRFLSPLSVVPL 124 (484)
Q Consensus 93 ~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~ 124 (484)
..++|++.+++++++....+...+|..|.|.+
T Consensus 298 ~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 298 VAAAGVILVLLGLFPKLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 37788888899888767999999998888764
No 30
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=33.56 E-value=2.4e+02 Score=30.31 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCcccHHHH
Q 011526 93 LIVASTLQIVLGFSGLWRNVTRFLSPLSVVPL 124 (484)
Q Consensus 93 ~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~ 124 (484)
...+|++.+++|+++-+..+...+|..|.|.+
T Consensus 320 ~~~aa~ilillgl~PK~~alia~IP~pVlGg~ 351 (433)
T PRK11412 320 FIYGSVMCLLVALIPALTRLFCSIPLPVSSAV 351 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56788899999998878899999998887655
No 31
>PF13142 DUF3960: Domain of unknown function (DUF3960)
Probab=32.02 E-value=22 Score=28.66 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=21.4
Q ss_pred HHhhhccCCcCccchhccccccccccc
Q 011526 433 FFLDNTLHKKDGQVRKDRGRHWWDKFW 459 (484)
Q Consensus 433 iiLn~~~~~~~~~~~~~~~~~~~~~~~ 459 (484)
=+.++++|.+++.+.|||.+..|++-+
T Consensus 23 ~l~~llvp~~pkg~~KerTIl~w~~Ke 49 (87)
T PF13142_consen 23 DLFSLLVPCEPKGEDKERTILMWKEKE 49 (87)
T ss_pred HHHHHhcCCCCCCCCceeEEeeechhh
Confidence 356788898877788999999997733
No 32
>COG4129 Predicted membrane protein [Function unknown]
Probab=31.95 E-value=5e+02 Score=26.90 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 011526 28 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG 107 (484)
Q Consensus 28 ~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ga~~vaGlv~illg~~~ 107 (484)
-.|-++.+++.++-.++|+..|. |+.+..++++.. +...+...+++-++|.++-+++-.+++.+.+
T Consensus 14 lKt~ia~~La~~ia~~l~~~~~~-----~A~i~AV~~l~~---------t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g 79 (332)
T COG4129 14 LKTGLAAGLALLIAHLLGLPQPA-----FAGISAVLCLSP---------TIKRSLKRALQRLLGNALGAILAVLFFLLFG 79 (332)
T ss_pred HHHHHHHHHHHHHHHHhCCCchH-----HHHHHHhhcccC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35667778888885588777664 555554433321 2223445567777776666555555544432
Q ss_pred hHHHHHHhcCcccHHHHHHHH
Q 011526 108 LWRNVTRFLSPLSVVPLISLV 128 (484)
Q Consensus 108 ~~~~l~~~fpp~V~G~~i~lI 128 (484)
..|...|.+++++
T Consensus 80 --------~~~~~~~v~~~i~ 92 (332)
T COG4129 80 --------QNPIAFGVVLLII 92 (332)
T ss_pred --------ccHHHHHHHHHHH
Confidence 3455666654443
No 33
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=28.12 E-value=2e+02 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHH
Q 011526 92 SLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLI 125 (484)
Q Consensus 92 a~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i 125 (484)
...++|++.+++++++-+..+...+|..|.|...
T Consensus 313 ~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~ 346 (415)
T TIGR00801 313 VIVGAAVILIALGFFPKIAALITSIPSPVLGGAS 346 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678888899999886678999999988876553
No 34
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=27.27 E-value=48 Score=35.19 Aligned_cols=40 Identities=10% Similarity=-0.142 Sum_probs=28.0
Q ss_pred cchhHHHHHHHhhhccCCcCccchhcccccccccccccCC
Q 011526 424 EPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKG 463 (484)
Q Consensus 424 gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (484)
...++.++..++|.+.+-+.++++|++|++.-|+.|+.-+
T Consensus 364 ~~v~t~ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~ 403 (409)
T COG0004 364 AFVVTFIILKVLKLIIGLRVSEEEELEGLDISEHGESAYS 403 (409)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHhhCCChHHhcccccc
Confidence 4456677778899998877677778889877555444333
No 35
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=26.43 E-value=1e+02 Score=32.34 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011526 319 VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCN 370 (484)
Q Consensus 319 ~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~ 370 (484)
..+++++.+++++......+...+|..|.|++.+..--.+...++++....+
T Consensus 96 ~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~ 147 (389)
T PF00860_consen 96 VLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIW 147 (389)
T ss_dssp HHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccc
Confidence 4677888899999988889999999999999988866667778888776554
No 36
>PRK10720 uracil transporter; Provisional
Probab=22.17 E-value=2.6e+02 Score=29.94 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhH-H--HHHHhhCChhHHHHHHHHHHHHHHhhhhh
Q 011526 319 VQISAGFMIFFSVLGK-F--GAVFASIPAPIVAALYCLFFAYVGAGGLS 364 (484)
Q Consensus 319 ~~~a~~~lill~~~Pk-~--~al~~~IP~~V~gg~li~~fg~i~~~Gi~ 364 (484)
..++|++.++++++.| + ..+...+|..|.|.+...+--...-.+++
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~ 141 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAG 141 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHh
Confidence 5677888888888753 2 35778999999888877633333334443
No 37
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=22.14 E-value=1e+03 Score=25.71 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHhHhHHHHHHHHhc
Q 011526 237 AGEAFAMMMASFVALVESTGAFFAVARYAS 266 (484)
Q Consensus 237 ~~~i~~~~~~~lv~~~es~g~~~av~~~~~ 266 (484)
+...+.++...+..++|..|..+++.+...
T Consensus 310 ~~i~lii~~~~lggil~~~G~l~~l~~~l~ 339 (454)
T TIGR00931 310 WSLSLVMIALTFGGVLQRIGVLDVILQSAN 339 (454)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 345566778889999999999999877654
No 38
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=20.80 E-value=1.9e+02 Score=28.05 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=39.0
Q ss_pred hHHHHHH-hcCcccHHHHHHHHHHHhhhhhcCCcc--c---hhhhHHHHHHHHHHHHHhhccccccCccccchhhHHHHH
Q 011526 108 LWRNVTR-FLSPLSVVPLISLVGFGLYEFGFPGVA--K---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSV 181 (484)
Q Consensus 108 ~~~~l~~-~fpp~V~G~~i~lIGl~l~~~~~~~~~--~---~~~v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigi 181 (484)
+.+|.++ ++.|+.+...+...-+.+...-..+.. . ++.++-.++.+.+=+.+..+.+.+ +..+++.++
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l~~------~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLTGIPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLLKK------NWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 4466654 567887776665555555443222211 1 344555555555544333332211 234566777
Q ss_pred HHHHHHHHHH
Q 011526 182 VIVWIYAHLL 191 (484)
Q Consensus 182 v~G~~~a~~~ 191 (484)
.+|.+++...
T Consensus 85 ~~g~~~~~~~ 94 (215)
T PF04172_consen 85 LVGSLVSIFS 94 (215)
T ss_pred HHHHHHHHHH
Confidence 6666654433
Done!