Query 011526
Match_columns 484
No_of_seqs 189 out of 1753
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 8.1E-65 2.8E-69 533.0 24.7 369 1-446 28-413 (429)
2 3qe7_A Uracil permease; uracil 27.7 4.9E+02 0.017 26.3 14.9 75 27-124 263-337 (429)
3 3hd6_A Ammonium transporter RH 23.1 41 0.0014 35.2 2.8 42 422-463 408-449 (490)
4 2b2h_A AMT-1, ammonium transpo 15.6 47 0.0016 33.8 1.2 39 423-461 351-389 (399)
5 1pw4_A Glycerol-3-phosphate tr 13.0 6.8E+02 0.023 23.8 9.1 17 315-331 90-106 (451)
6 4gc0_A D-xylose-proton symport 6.1 1.2E+03 0.04 22.5 7.7 22 429-450 453-474 (491)
7 2l8t_A Transposon TN557 toxic 5.7 3.6E+02 0.012 19.4 2.4 18 12-29 12-29 (71)
8 4ev6_A Magnesium transport pro 5.1 5.9E+02 0.02 24.4 4.5 24 79-102 308-331 (339)
9 2gfp_A EMRD, multidrug resista 4.8 1.7E+03 0.059 20.2 7.9 39 13-51 27-69 (375)
10 4f4l_A ION transport protein; 4.5 1.3E+02 0.0043 24.5 -0.8 7 433-439 84-90 (112)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=8.1e-65 Score=532.98 Aligned_cols=369 Identities=22% Similarity=0.365 Sum_probs=326.7
Q ss_pred CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCCcceEeccccchHHHHHHHHhhcccCCCCCCCc
Q 011526 1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPV 79 (484)
Q Consensus 1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~-G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~ 79 (484)
|+++++++|+++ |+|++ +++++||++|++|+++ |+|+|+++|+||+|++++..+.+ +
T Consensus 28 m~~~~v~~Plil----Gl~~~-------~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~---------- 85 (429)
T 3qe7_A 28 MFGATVLVPVLF----HINPA-------TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-L---------- 85 (429)
T ss_dssp HHHHHHHHHHTT----TSCHH-------HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-G----------
T ss_pred HHHHHHHhHHHh----CCCHH-------HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-c----------
Confidence 678999999997 88873 8999999999999986 89999999999999999877753 2
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhh--hhH-HHHHHhcCcccHHHHHHHHHHHhhhhhcCCcc-----------chhh
Q 011526 80 EKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-----------KCVE 145 (484)
Q Consensus 80 ~~~~~~~~~~~ga~~vaGlv~illg~~--~~~-~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~-----------~~~~ 145 (484)
+|++++|+++++|+++++++++ +++ +|++|+|||+|+|+++++||+++++.++++.+ .++.
T Consensus 86 -----g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
T 3qe7_A 86 -----GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII 160 (429)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHH
Confidence 6899999999999999999987 554 79999999999999999999999988765422 2567
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcccc
Q 011526 146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 225 (484)
Q Consensus 146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P 225 (484)
+++.+++++++++++.| +++|++++|+|+++||++++.+|. +|+++ +.++||+++|
T Consensus 161 la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~----------------~d~~~-v~~a~~~~lP 216 (429)
T 3qe7_A 161 ISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGI----------------VDTTP-IINAHWFALP 216 (429)
T ss_dssp HHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHH----------------TTSSH-HHHSCSSCCC
T ss_pred HHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcC----------------CCccc-cccccccccc
Confidence 88888888888876654 467899999999999999999985 35543 5678999999
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccch
Q 011526 226 WPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA 305 (484)
Q Consensus 226 ~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~ 305 (484)
. |+.|+||++.+..++++++++++|++|++.++++..+++..+++++||++.+||++|+++|+||++|.|+|+ ||+
T Consensus 217 ~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~-en~ 292 (429)
T 3qe7_A 217 T---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENI 292 (429)
T ss_dssp C---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECH-HHH
T ss_pred C---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHH-HhH
Confidence 5 577899999999999999999999999999999998765546789999999999999999999999999999 999
Q ss_pred heehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhh--hhcccCCCcceeehhhH
Q 011526 306 GLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL--QFCNLNSFRVKFILGFS 383 (484)
Q Consensus 306 g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l--~~v~~~~~rn~~ivg~s 383 (484)
|+++.||++||++...+|+++++++++||+++++++||.||+||+++++||++..+|+|.+ +++|++++||.+|++++
T Consensus 293 g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~ 372 (429)
T 3qe7_A 293 GVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVI 372 (429)
T ss_dssp HHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999988999999999
Q ss_pred HHHhcchhhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCcCccc
Q 011526 384 IFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQV 446 (484)
Q Consensus 384 l~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~~~~~ 446 (484)
+.+|++... +| ++.+..||+++|+++|++||+++|++++++
T Consensus 373 l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~l~~~~~~~ 413 (429)
T 3qe7_A 373 LIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLIFKLISVLR 413 (429)
T ss_dssp HHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHHhcCccccC
Confidence 999997421 12 346778999999999999999999874333
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=27.70 E-value=4.9e+02 Score=26.29 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhh
Q 011526 27 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 106 (484)
Q Consensus 27 i~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ga~~vaGlv~illg~~ 106 (484)
.+..+.+-|++|++=+++| ..|. +++.-=....... +.. ..+ ....+|++.++++++
T Consensus 263 ~~r~l~adGla~i~~glfG-g~p~---Tt~~en~g~i~~t---g~~-----------sr~-----~~~~ag~~lillgl~ 319 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFG-STPN---TTYGENIGVMAIT---RVY-----------STW-----VIGGAAIFAILLSCV 319 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCE---EECHHHHHHHHHH---TBC-----------CHH-----HHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHHhcC-CCCc---chHHHhHHHHHhc---CCc-----------chH-----HHHHHHHHHHHHHHH
Confidence 4688999999999999997 4675 2222111111111 110 122 357888888999988
Q ss_pred hhHHHHHHhcCcccHHHH
Q 011526 107 GLWRNVTRFLSPLSVVPL 124 (484)
Q Consensus 107 ~~~~~l~~~fpp~V~G~~ 124 (484)
+.+..+...+|..|.|..
T Consensus 320 pk~~al~~~IP~~vlgg~ 337 (429)
T 3qe7_A 320 GKLAAAIQMIPLPVMGGV 337 (429)
T ss_dssp HHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHH
Confidence 767889999998887664
No 3
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=23.15 E-value=41 Score=35.15 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=29.9
Q ss_pred cccchhHHHHHHHhhhccCCcCccchhcccccccccccccCC
Q 011526 422 SSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKG 463 (484)
Q Consensus 422 ~~gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (484)
.-++..+.++..++|........+++|.+|++-|+-+++..+
T Consensus 408 ~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~ 449 (490)
T 3hd6_A 408 AMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNST 449 (490)
T ss_dssp HHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC-
T ss_pred HHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCccccc
Confidence 345667788888899887766666778888888877554443
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=15.57 E-value=47 Score=33.80 Aligned_cols=39 Identities=10% Similarity=-0.125 Sum_probs=27.0
Q ss_pred ccchhHHHHHHHhhhccCCcCccchhccccccccccccc
Q 011526 423 SEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSF 461 (484)
Q Consensus 423 ~gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (484)
-....+.++..++|.+.+-+-++++|++|++.-|+.+..
T Consensus 351 ~~~v~~~i~~~il~~~~glRv~~e~E~~GlD~~~hg~~a 389 (399)
T 2b2h_A 351 YAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVA 389 (399)
T ss_dssp HHHHHHHHHHHHHHHHTCSBCCHHHHHHCHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHhCCCHHHhCccc
Confidence 355667777788888777666677788898775554433
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=12.97 E-value=6.8e+02 Score=23.81 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=7.8
Q ss_pred ccchHHHHHHHHHHHHH
Q 011526 315 SRRVVQISAGFMIFFSV 331 (484)
Q Consensus 315 SR~~~~~a~~~lill~~ 331 (484)
+|+.....+.++..++.
T Consensus 90 g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 90 NPRVFLPAGLILAAAVM 106 (451)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH
Confidence 44445444444444443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=6.14 E-value=1.2e+03 Score=22.51 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHHhhhccCCcCccchhcc
Q 011526 429 GCVAFFLDNTLHKKDGQVRKDR 450 (484)
Q Consensus 429 ~l~aiiLn~~~~~~~~~~~~~~ 450 (484)
.+.+++.-..+|++|+++.||=
T Consensus 453 ~~~~i~~~~~~PETkg~tLeei 474 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTLEEL 474 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCHHHH
T ss_pred HHHHHHHHheecCCCCCCHHHH
Confidence 3444455567899988887763
No 7
>2l8t_A Transposon TN557 toxic shock syndrome toxin-1; scaffold, bacteriophage, SAPI, structural protein; NMR {Staphylococcus aureus}
Probab=5.75 E-value=3.6e+02 Score=19.40 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=10.9
Q ss_pred hhhhcCCChHHHHHHHHH
Q 011526 12 LVPQMGGGNEEKAKVIQT 29 (484)
Q Consensus 12 i~~a~gl~~~~~~~li~~ 29 (484)
++.++|++.+++-.++.+
T Consensus 12 vanafglneedtnllina 29 (71)
T 2l8t_A 12 VANAFGLNEEDTNLLINA 29 (71)
T ss_dssp HHHTTCCCSHHHHHHHHH
T ss_pred HHHhhcCCcchhhhhHhh
Confidence 455666666666655554
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.12 E-value=5.9e+02 Score=24.44 Aligned_cols=24 Identities=4% Similarity=0.098 Sum_probs=14.8
Q ss_pred chhhhchHHHHHHHHHHHHHHHHH
Q 011526 79 VEKFKRTMRAIQGSLIVASTLQIV 102 (484)
Q Consensus 79 ~~~~~~~~~~~~ga~~vaGlv~il 102 (484)
+..|+.++..+.+.+++.+++.+.
T Consensus 308 el~~~~gy~~~l~~m~~~~~~~~~ 331 (339)
T 4ev6_A 308 LANNPQGFWLVMALMVVIIMIFVY 331 (339)
T ss_dssp TSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHH
Confidence 344666777777776666555443
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=4.85 E-value=1.7e+03 Score=20.19 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.2
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 011526 13 VPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 51 (484)
Q Consensus 13 ~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~----~G~rlPiv 51 (484)
.+.+|.++++...+.+...+...++.++-+. +|.|..+.
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 69 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL 69 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 4568999998888888888888888877765 56555554
No 10
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=4.52 E-value=1.3e+02 Score=24.53 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.6
Q ss_pred HHhhhcc
Q 011526 433 FFLDNTL 439 (484)
Q Consensus 433 iiLn~~~ 439 (484)
++||+++
T Consensus 84 i~lNLfi 90 (112)
T 4f4l_A 84 TVLNLFI 90 (112)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4555554
Done!