Query 011526
Match_columns 484
No_of_seqs 189 out of 1753
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 09:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011526.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011526hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 27.3 78 0.0057 28.1 8.2 19 235-253 22-40 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 3.6 3.5E+02 0.025 22.5 3.8 43 9-51 31-77 (417)
3 d3cx5c1 f.32.1.1 (C:262-385) M 2.8 8.1E+02 0.059 18.0 4.8 41 335-376 17-57 (124)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 2.2 6.1E+02 0.044 14.0 2.4 14 176-189 13-26 (32)
5 d1ymga1 f.19.1.1 (A:6-239) Aqu 1.9 4.4E+02 0.032 21.7 2.1 15 426-440 204-219 (234)
6 d2j7ja2 g.37.1.1 (A:29-57) Tra 1.8 1.9E+02 0.014 16.2 -0.4 15 465-479 9-23 (29)
7 d2axta1 f.26.1.1 (A:10-344) Ph 1.5 6.1E+02 0.044 22.5 2.2 36 419-454 195-230 (335)
8 d1cixa_ g.3.6.2 (A:) Tachystat 1.4 4.3E+02 0.031 15.7 0.6 9 467-475 12-20 (44)
9 d1v54l_ f.23.6.1 (L:) Mitochon 1.3 2.9E+02 0.021 17.3 -0.4 11 471-481 8-18 (46)
10 d2g0ia1 d.64.2.1 (A:1-111) Hyp 1.3 8.5E+02 0.062 17.4 2.3 15 29-43 29-43 (111)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.30 E-value=78 Score=28.15 Aligned_cols=19 Identities=0% Similarity=-0.096 Sum_probs=9.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 011526 235 FDAGEAFAMMMASFVALVE 253 (484)
Q Consensus 235 f~~~~i~~~~~~~lv~~~e 253 (484)
..|..+...+..++....+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~ 40 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLV 40 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555444445555444
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=3.5e+02 Score=22.47 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 011526 9 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 51 (484)
Q Consensus 9 Plii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~----~G~rlPiv 51 (484)
|.-+.+.+|+++.|...+.+...+...++..+-+. +|.|..+.
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 44466778999999998888888888888888775 67666554
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.81 E-value=8.1e+02 Score=18.05 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=23.3
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcc
Q 011526 335 FGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRV 376 (484)
Q Consensus 335 ~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn 376 (484)
+-+++.+||.- .||++.+..+.+...-+-.+.+.+..+.|.
T Consensus 17 ~YaiLRsiP~k-~~Gvl~~~~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDK-LLGVITMFAAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSH-HHHHHHHHHHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcc-hhhhHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 56789999988 455555544444444444454444443343
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.25 E-value=6.1e+02 Score=14.00 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHH
Q 011526 176 AVIFSVVIVWIYAH 189 (484)
Q Consensus 176 aiLigiv~G~~~a~ 189 (484)
+...|+.+|.+.+.
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 55666777766543
No 5
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.95 E-value=4.4e+02 Score=21.72 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=8.6
Q ss_pred hhHHHHHHHh-hhccC
Q 011526 426 FVAGCVAFFL-DNTLH 440 (484)
Q Consensus 426 ~~g~l~aiiL-n~~~~ 440 (484)
.+|++++.++ +.++.
T Consensus 204 ~~Ga~laa~ly~~~~~ 219 (234)
T d1ymga1 204 VIGAGLGSLLYDFLLF 219 (234)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3566666666 54443
No 6
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=1.81 E-value=1.9e+02 Score=16.20 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=10.2
Q ss_pred CCCCcccCCCccccc
Q 011526 465 TRSEEFYSLPFNLNK 479 (484)
Q Consensus 465 ~~~~~~y~~p~~~~~ 479 (484)
+--++.|++|.++.|
T Consensus 9 egcdk~fs~ps~lkr 23 (29)
T d2j7ja2 9 EGCDKRFSLPSRLKR 23 (29)
T ss_dssp TTCCCEESSHHHHHH
T ss_pred cCccccccCHHHHhh
Confidence 344567888887754
No 7
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.52 E-value=6.1e+02 Score=22.46 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=22.6
Q ss_pred ccccccchhHHHHHHHhhhccCCcCccchhcccccc
Q 011526 419 VPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHW 454 (484)
Q Consensus 419 ~~l~~gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~ 454 (484)
-++++.+..+.==+.+++.+.+++.|.+-.++|-+-
T Consensus 195 ~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~~~f 230 (335)
T d2axta1 195 GVFGGALFCAMHGSLVTSSLIRETTETESANYGYKF 230 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHhcccCCcCCCcCCcccCCCC
Confidence 344555666666677888888876555445555444
No 8
>d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=1.44 E-value=4.3e+02 Score=15.68 Aligned_cols=9 Identities=33% Similarity=0.456 Sum_probs=6.4
Q ss_pred CCcccCCCc
Q 011526 467 SEEFYSLPF 475 (484)
Q Consensus 467 ~~~~y~~p~ 475 (484)
.-++|+||+
T Consensus 12 vvrsyglpt 20 (44)
T d1cixa_ 12 VVRSYGLPT 20 (44)
T ss_dssp CSCCTTSCS
T ss_pred EEEccCCCC
Confidence 346799986
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.30 E-value=2.9e+02 Score=17.33 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=7.6
Q ss_pred cCCCcccccCC
Q 011526 471 YSLPFNLNKYF 481 (484)
Q Consensus 471 y~~p~~~~~~~ 481 (484)
-+|||++.+..
T Consensus 8 ~NLPFsv~Nk~ 18 (46)
T d1v54l_ 8 KNIPFSVENKW 18 (46)
T ss_dssp TSSSSCCSSHH
T ss_pred CCCCccchhHH
Confidence 46888887643
No 10
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=1.27 E-value=8.5e+02 Score=17.41 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 011526 29 TLLFVAGLNTLLQSL 43 (484)
Q Consensus 29 ~tl~~sGi~Tllq~~ 43 (484)
..+.+++++++.|+.
T Consensus 29 ~DIVCAaVS~l~~~~ 43 (111)
T d2g0ia1 29 FDIVCAAVSTLSMNL 43 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcEEEehHHHHHHHH
Confidence 456888999999975
Done!