BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011527
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/425 (45%), Positives = 268/425 (63%), Gaps = 9/425 (2%)
Query: 56 ARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE 115
A++ P + ++ ++ P +G RDFPPE MR R LF F ++ FGFEE D PVLE
Sbjct: 14 AQTQGPGSMQKNM--VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLE 71
Query: 116 SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQ 175
SE L+IRKAGEEI +Q++ F +G RVALRPE+TPSLARL++ KG+S+ LP KW+++ Q
Sbjct: 72 SEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQ 131
Query: 176 CWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRK 235
CW EHYQWNMDI+GV +V+AE EL+ + + +G+++ DVG +++SRK
Sbjct: 132 CWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRK 191
Query: 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295
VLQ V+ + F VC+I+DK+EK+P + ++ L G+ ++ + LS+KS+
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSI 251
Query: 296 TEL------EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL 349
E+ E EAV +L+ F E +GY DW+ FDASVVRGLAYYTGIVFE FDR+GK
Sbjct: 252 DEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKF 311
Query: 350 RAICGGGRYDQLLSTFGG-DDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDH 408
RA+CGGGRYD LL+T+G IP GFGFGD VI H V+++V D
Sbjct: 312 RALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDE 371
Query: 409 NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVK 468
+++ A V LR G+S D++L+ K + F A R+ A R +LV EW++G V VK
Sbjct: 372 SMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVK 431
Query: 469 ILSSG 473
+L G
Sbjct: 432 MLREG 436
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 267/430 (62%), Gaps = 7/430 (1%)
Query: 60 SPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
+ P S + ++ P +G RDFPPE MRLR +LF F +R FGFEE D PVLESE L
Sbjct: 16 TQGPGSMQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEEL 75
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
+IRKAGEEI +Q++ F +G RVALRPE+TPSLAR ++ KG+S+ LP KW+++ QCW
Sbjct: 76 YIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRY 135
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239
EHYQWNMDIIGV +V++E EL+ + T + +G+++ DVG +I+SRK+LQ
Sbjct: 136 EAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQT 195
Query: 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL- 298
V+ + F VC+I+DK+EKLP + + L + G+ ++ + LS+K++ E+
Sbjct: 196 VVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIA 255
Query: 299 -----EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAIC 353
E EAV +L+ + E +G+ DW+ FDASVVRGLAYYTGIVFE FDRDG RA+C
Sbjct: 256 QRIGEEHEAVRELRDFITQIEAYGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNFRALC 315
Query: 354 GGGRYDQLLSTFGGDD-IPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQG 412
GGGRYD LL+T+G +P GFGFGD VI +H V+++V D ++
Sbjct: 316 GGGRYDNLLTTYGSPTAVPCVGFGFGDCVIVELLNEKKLLPELHHVVDDLVIPFDETMRP 375
Query: 413 AASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSS 472
A + LR G+S D+V + K + F A RI A R +LV EW +G V VK+L
Sbjct: 376 HALSILRRLRDAGRSADIVFDKKKVVQAFNYADRIGALRAVLVAPDEWARGEVRVKMLRE 435
Query: 473 GEQYEIKLDE 482
G E +E
Sbjct: 436 GAGREEGANE 445
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/424 (32%), Positives = 217/424 (51%), Gaps = 19/424 (4%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
++ + +G RDF PED + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 3 RLQIEKIRGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 62
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXE 189
Q Y F D+G R V L PE TPS R V + K + PL+W++ + W E
Sbjct: 63 QQTYSFVDKGGREVTLIPEATPSTVRXVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYRE 121
Query: 190 HYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV-GFRISSRKVLQEVL--RCHSI 246
HYQ+N DI G + A+AE+I+ + R+G+ D+ RI+SRK+ +E++ S
Sbjct: 122 HYQFNADIFGSDSPEADAEVIALASSILDRLGL--QDIYEIRINSRKIXEEIIGGXTSSD 179
Query: 247 PEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS-------IKSLTELE 299
P +F IID+ K+ + + L+SAG+ E + + + S +T
Sbjct: 180 PFSVFS----IIDRYHKISREEFVDQLRSAGIGEDGVSXIADLCSGTRGIDEXARITGKS 235
Query: 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYD 359
E +A + L +G + +++D S+VRGL+YYTGIVFE +DR G+ RAI GGGRYD
Sbjct: 236 SEEIARXAAVEDLLASYGVKN-VRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYD 294
Query: 360 QLLSTFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQGAASMVAT 419
L S G+ +PA GFG GDAVI + +C + + +
Sbjct: 295 NLASLXSGESVPAVGFGXGDAVISLLLKRENVQIPREKK-SVYICRVGKINSSIXNEYSR 353
Query: 420 TLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIK 479
LR +G +V + + + L K A+ I A ++ G + ++G+V ++ +G Q +
Sbjct: 354 KLRERGXNVTVEIXERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNXYTGSQENVG 413
Query: 480 LDEL 483
LD +
Sbjct: 414 LDSV 417
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 190/425 (44%), Gaps = 32/425 (7%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++ ++
Sbjct: 5 PRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEM 64
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKGK--SVSLPLKWFAVGQCWXXXXXXXXXXXEH 190
Y F+D+G+R + LRPE T ++ R I+ + + P+K + G + +
Sbjct: 65 YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
Query: 191 YQWNMDIIGVPAVTAEAELISSIITFFKRIGITA-----SDVGFRISSRKVLQEVLRCHS 245
Q+ ++ IG + +AE+++ ++ ++ G+ + VG ++SRK E L H
Sbjct: 125 NQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVG-DMASRKEYNEALVKHF 183
Query: 246 IPE-HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304
P H F C ++ P+ ++ D K + AI+ R+ L E+ A
Sbjct: 184 EPVIHEFCSDC--QSRLHTDPMRIL--DCK-VDRDKEAIKTAPRITDF-----LNEESKA 233
Query: 305 DLKLLFSLAEKFG--YSDWIQFDASVVRGLAYYTGIVFECF----DRDGKLRAICGGGRY 358
+ + + + G Y++ D ++VRGL YYT FE + DG + +CGGGRY
Sbjct: 234 YYEQVKAYLDDLGIPYTE----DPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRY 289
Query: 359 DQLLSTFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQGAASMVA 418
+ LL G GF + ++ + + A +
Sbjct: 290 NGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLL 349
Query: 419 TTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEI 478
LR G D + +K K+A R+ A+ I++G E + + VK +++GE I
Sbjct: 350 NHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETI 409
Query: 479 KLDEL 483
+LD L
Sbjct: 410 ELDAL 414
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 194/453 (42%), Gaps = 48/453 (10%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
QK + PKGTRD+ P M +R +F + G E +D PV E + + K GE+
Sbjct: 63 QKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDS 122
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXX 185
+ +Y +D+G ++LR +LT AR L + K ++ K + + + +
Sbjct: 123 K-LIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRG 177
Query: 186 XXXEHYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCH 244
E YQ + DI G + +AE + + + I D +++ R++L +
Sbjct: 178 RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI--GDFLVKVNDRRILDGMFAIC 235
Query: 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDL-------------------KSAGMSEAAIEE 285
+ + F +C +DK++K+ + +KN++ + G+S +E+
Sbjct: 236 GVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVS--LVEQ 293
Query: 286 LLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDR 345
LL+ + S + E + DLKLLF FG D I FD S+ RGL YYTG+++E
Sbjct: 294 LLQDPKL-SQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLL 352
Query: 346 DGKLRA---------ICGGGRYDQLLSTFG--GDDIPACGFGFGDA---VIXXXXXXXXX 391
+A + GGRYD L+ F G +P G G I
Sbjct: 353 QTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALE 412
Query: 392 XXXXNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKP-LKWVFKRAARINAQ 450
+ + +V + L + + L G +L+ + P L +
Sbjct: 413 EKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIP 472
Query: 451 RLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483
+ ++G E + G++ ++ ++S E+ +++ ++L
Sbjct: 473 LVAIIGEQELKDGVIKLRSVTSREEVDVRREDL 505
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 192/449 (42%), Gaps = 48/449 (10%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQL 132
+ PKGTRD+ P M +R +F + G E +D PV E + + K GE+ + +
Sbjct: 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSK-LI 72
Query: 133 YCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXXXXXE 189
Y +D+G ++LR +LT AR L + K ++ K + + + + E
Sbjct: 73 YDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRGRYRE 128
Query: 190 HYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
YQ + DI G + +AE + + + I D +++ R++L + + +
Sbjct: 129 FYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI--GDFLVKVNDRRILDGMFAICGVSD 186
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDL-------------------KSAGMSEAAIEELLRV 289
F +C +DK++K+ + +KN++ + G+S +E+LL+
Sbjct: 187 SKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVS--LVEQLLQD 244
Query: 290 LSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL 349
+ S + E + DLKLLF FG D I FD S+ RGL YYTG+++E
Sbjct: 245 PKL-SQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPA 303
Query: 350 RA---------ICGGGRYDQLLSTFG--GDDIPACGFGFGDA---VIXXXXXXXXXXXXX 395
+A + GGRYD L+ F G +P G G I
Sbjct: 304 QAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIR 363
Query: 396 NHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKP-LKWVFKRAARINAQRLIL 454
+ + +V + L + + L G +L+ + P L + + +
Sbjct: 364 TTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAI 423
Query: 455 VGTTEWQKGMVGVKILSSGEQYEIKLDEL 483
+G E + G++ ++ ++S E+ +++ ++L
Sbjct: 424 IGEQELKDGVIKLRSVTSREEVDVRREDL 452
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/432 (24%), Positives = 178/432 (41%), Gaps = 27/432 (6%)
Query: 63 PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122
P++ ++Q I +G D+ P + + + + V +G+ E+ P++E LF R
Sbjct: 7 PMAKNIQAI-----RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKR 61
Query: 123 KAGEE---IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
GE + ++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 62 AIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRH 121
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239
+ +Q ++ G+ +AELI +++ +GI+ V ++S L+
Sbjct: 122 ERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLE- 179
Query: 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLD----VIKNDLKSAGMSEAAIEELLRVLSIKSL 295
+ + V + EKL D + N L+ ++ LL +L
Sbjct: 180 -----ARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLN--DAPAL 232
Query: 296 TE-LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAIC 353
+ L+ E+ L L E G + + +VRGL YY VFE G +C
Sbjct: 233 GDYLDEESREHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVC 290
Query: 354 GGGRYDQLLSTFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQGA 413
GGRYD L+ GG PA GF G + + V+ + A + Q A
Sbjct: 291 AGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSA 350
Query: 414 ASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILS 471
A +A LR + V L+ K F RA + A+ +++G +E G VK L
Sbjct: 351 AMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLR 410
Query: 472 SGEQYEIKLDEL 483
SGEQ + D +
Sbjct: 411 SGEQTAVAQDSV 422
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/451 (23%), Positives = 188/451 (41%), Gaps = 40/451 (8%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
KI+ + P G +F P + RL +L + V +GF ++ P +E + ++ G +
Sbjct: 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEV-LQAKGNQGD 67
Query: 130 DQLYCFE---------------DRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
+ +Y E D G+ AL+ + T LA + + ++ P +
Sbjct: 68 NIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQXD 127
Query: 175 QCWXXXXXXXXXXXEHYQWNMDIIGVPAVTA--EAELISSIITFFKRIGITASDVGFRIS 232
+ + Q ++D++G ++ +A+ + I F+ + I D RI+
Sbjct: 128 VVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIFEAVNI--GDFVIRIN 185
Query: 233 SRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMS------------- 279
+RKVL + +I E IID +EK+ +K +L+ G++
Sbjct: 186 NRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKI 245
Query: 280 EAAIEELLRVLSIKSLTELEGE----AVADLKLLFSLAEKFGYSD-WIQFDASVVRGLAY 334
+ +++++L L S T E E V++L+ + + G D D ++ RGL Y
Sbjct: 246 DGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNY 305
Query: 335 YTGIVFEC-FDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFG-DAVIXXXXXXXXXX 392
YTG V+E L +IC GGRY++L+ TF G+ P G G +I
Sbjct: 306 YTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKXPGVGISIGLTRLISRLLKAGILN 365
Query: 393 XXXNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRL 452
+ +V L V+ LR G +V E + L F+ A + +
Sbjct: 366 TLPPTPAQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFC 425
Query: 453 ILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483
+++G E +K L SGEQ E+ L +L
Sbjct: 426 VIIGADEAAAQKSSLKDLQSGEQVEVALADL 456
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 178/421 (42%), Gaps = 29/421 (6%)
Query: 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLY 133
+GT+D +++R+ + ++V G E+ P+ E +F + G +R +++
Sbjct: 7 RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF 66
Query: 134 CFEDRGNRRVALRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWXXXXXXXXXXXEHYQ 192
F+DRG R + LRPE T ++ R ++ G V P++ + G + + +Q
Sbjct: 67 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 126
Query: 193 WNMDIIGVPAVTAEAELISSIITFFKRIGI--------TASDVGFRISSRKVLQEVLRCH 244
N + +G +AE + + K +G+ + D R L+EVL H
Sbjct: 127 VNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPH 186
Query: 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG-EAV 303
+ + D E+L +N ++ + LL+ L ++ + + G EA
Sbjct: 187 --------REALSEDSKERLE----ENPMRILDSKSERDQALLKELGVRPMLDFLGEEAR 234
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLL 362
A LK + E+ S + + ++VRGL YY FE + G A+ GGGRYD L
Sbjct: 235 AHLKEVERHLERL--SVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLS 292
Query: 363 STFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQGAASMVATTLR 422
GG +P GF FG + + + L A +A LR
Sbjct: 293 ELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALR 352
Query: 423 GKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDE 482
+ ++ + KP K + + A + A +G E + G V +K L++GEQ + +E
Sbjct: 353 PRLRAEYALAPRKPAKGL-EEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREE 411
Query: 483 L 483
+
Sbjct: 412 V 412
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 173/423 (40%), Gaps = 22/423 (5%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 62
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 63 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 122
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
+ +Q ++ G+ +AELI +++ +GI+ V ++S L+ +
Sbjct: 123 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLE------ARAN 175
Query: 249 HLFGKVCIIIDKIEKLPLD----VIKNDLKSAGMSEAAIEELLRVLSIKSLTE-LEGEAV 303
+ V + EKL D + N L+ ++ LL +L + L+ E+
Sbjct: 176 YRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLN--DAPALGDYLDEESR 233
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLL 362
L L E G + + +VRGL YY VFE G +C GGRYD L+
Sbjct: 234 EHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLV 291
Query: 363 STFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQGAASMVATTLR 422
GG PA GF G + + V+ + A + Q AA +A LR
Sbjct: 292 EQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLR 351
Query: 423 GKGQSVDLVLE--SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKL 480
+ V L+ K F RA + A+ +++G +E G VK L SGEQ +
Sbjct: 352 DELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQ 411
Query: 481 DEL 483
D +
Sbjct: 412 DSV 414
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 173/423 (40%), Gaps = 22/423 (5%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 4 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 63
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 64 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 123
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
+ +Q ++ G+ +AELI +++ +GI+ V ++S L+ +
Sbjct: 124 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS-EHVTLELNSIGSLE------ARAN 176
Query: 249 HLFGKVCIIIDKIEKLPLD----VIKNDLKSAGMSEAAIEELLRVLSIKSLTE-LEGEAV 303
+ V + EKL D + N L+ ++ LL +L + L+ E+
Sbjct: 177 YRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLN--DAPALGDYLDEESR 234
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLL 362
L L E G + + +VRGL YY VFE G +C GGRYD L+
Sbjct: 235 EHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLV 292
Query: 363 STFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDHNLQGAASMVATTLR 422
GG PA GF G + + V+ + A + Q AA +A LR
Sbjct: 293 EQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLR 352
Query: 423 GKGQSVDLVLE--SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKL 480
+ V L+ K F RA + A+ +++G +E G VK L SGEQ +
Sbjct: 353 DELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQ 412
Query: 481 DEL 483
D +
Sbjct: 413 DSV 415
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 148/316 (46%), Gaps = 24/316 (7%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLES-EALFIRKAGEEIRDQLYC 134
P G RD PE + + + E L+G++ ++ P LE E + + A + QL+
Sbjct: 13 PFGXRDTLPEWYKTKKNICDQXTEEINLWGYDXIETPTLEYYETVGVVSA--ILDQQLFK 70
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWN 194
D+ + LRP+ T +ARLV K + PL+ + E Q
Sbjct: 71 LLDQQGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLG 130
Query: 195 MDIIGVPAVTAEAELISSIITFFKRIGITASDV--GFRISSRKVLQEVL----RCHSIPE 248
+++IG +A+ E+I+ I KR G++ V G +L +V+ R +
Sbjct: 131 VELIGDGTASADGEVIALXIAALKRAGLSEFKVAIGHVGYVNALLXDVVGNEQRADRLRR 190
Query: 249 HLFGKVCI-IIDKIEKLPLDVIKN----DLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303
L+ K + + ++ L L I +L S AAIEE ++ TE A+
Sbjct: 191 FLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAIEEARGLIQ----TEKGKTAL 246
Query: 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECF-DRDGKLRAICGGGRYDQLL 362
A+ L+ + E +G S++++FD ++V +YYTG+VFE + +R G +C GGRYD+LL
Sbjct: 247 AEXTKLYEVLESYGASEYVKFDLTLVLHXSYYTGVVFEGYGNRLGV--PLCSGGRYDELL 304
Query: 363 STFGGDDIPACGFGFG 378
S F PA GFG
Sbjct: 305 SKF---HRPAQATGFG 317
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 147/335 (43%), Gaps = 25/335 (7%)
Query: 56 ARSLSPSPVSDDLQKID-VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVL 114
A++ P +++ +K++ + KG D P+D L + + + R +G++ + P++
Sbjct: 14 AQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIV 73
Query: 115 ESEALFIRKAGEE---IRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSVSLPLKW 170
E LF R GE + ++Y F D N + LRPE T ++ R I+ P +
Sbjct: 74 EHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRL 133
Query: 171 FAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230
+ +G + + +Q ++ +G A+AE++ ++ +G+T +
Sbjct: 134 WYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTG--IKLE 191
Query: 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIK----NDLKSAGMSEAAIEEL 286
I+S + +E H + + +KL D + N L+ A++E+
Sbjct: 192 INSLGLAEER------AAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEI 245
Query: 287 LRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQF--DASVVRGLAYYTGIVFE-CF 343
+R + L + G+ + F ++ ++ + F + +VRGL YY VFE
Sbjct: 246 VR--NAPKLIDFLGDVS---RAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVT 300
Query: 344 DRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFG 378
D+ G + GGRYD L+ GG ACG+ G
Sbjct: 301 DKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMG 335
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 137/345 (39%), Gaps = 59/345 (17%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR-KAGEEIRDQLYC 134
P G +D P+ + R + G+E V + E +R ++ E RD +
Sbjct: 26 PPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRL 85
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQW- 193
F D G VALRPE+TPS+AR+ + + P++W C+ W
Sbjct: 86 F-DGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRW-----CYCERVYRRTDDPASLSWA 139
Query: 194 -----NMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR-----ISSRKVLQEVLRC 243
+G+ + EA + + + + ++ G R +S +++ +L
Sbjct: 140 SGKAAESTQVGIERIGEEAS-VDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDA 198
Query: 244 HSIPEHLFGK--VCIIIDKIEKL----------PLDVIKNDL-----------KSAGMSE 280
I L C+ + +D++ N L +S S+
Sbjct: 199 LGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASD 258
Query: 281 AAIEELLRVLSIKSLTELEGEAVADLK----LLFSLAEKFG----YSDWIQFDASVVRGL 332
+E LLR ++ A AD++ L LAE SD + FD ++ R L
Sbjct: 259 RELEALLR-------DAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHREL 311
Query: 333 AYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGF 377
YYTG+VFE F G I GGRYD+LL+ FG PA GF F
Sbjct: 312 DYYTGLVFEMF-APGVGAPIAQGGRYDELLAQFGA-GAPAVGFAF 354
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 139/315 (44%), Gaps = 15/315 (4%)
Query: 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALF--IRKAG 125
++KI+ P+ + + ++ + +++ L ++EV P E L+ + G
Sbjct: 17 MEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNG 76
Query: 126 EEI-RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXX 184
+ +++++ F + + LR + T L RL Q S S +F G+ +
Sbjct: 77 KTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYF--GKIFRKEKRHK 134
Query: 185 XXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCH 244
E+YQ +++ G A +E E++S + +++G+ + F I S K Q + +
Sbjct: 135 GRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKT--VFEIGSAKFFQRLCQLA 192
Query: 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDLKS---AGMSEAAI-EELLRVLSIKSLTELEG 300
L ++ + D + L + KN+ + E I EL R+ ++ + T+ +
Sbjct: 193 DGSTELLTELLLKKD-LSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTK-DD 250
Query: 301 EAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQ 360
++ L +EK I D +V + YYT ++F+ + + I GGRYDQ
Sbjct: 251 VLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAAN-QPILSGGRYDQ 309
Query: 361 LLSTFGGDDIPACGF 375
LLS F ++ A GF
Sbjct: 310 LLSNF-QEEAFAIGF 323
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 77 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 131
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHY-QWNMDIIGVPA 202
LRP LTP+L + + +++ P+K F +G C+ EH ++ M +
Sbjct: 132 CLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCY----RKESDGKEHLEEFTMLVFWQMG 187
Query: 203 VTAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 188 SGCTRENLESIITDFLNHLGIDFKIVG 214
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERXGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N G
Sbjct: 133 CLRPXLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTXLNFCQXGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 243 CHSIPE----HLFGKVCIIIDKIEKLPLDVIKNDL---KSAGMSEAAIEELLRVLSIKSL 295
C SIP +F K +LP D+I N KSAG+ E++L LSI SL
Sbjct: 318 CSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDILSELSIYSL 377
Query: 296 TE 297
E
Sbjct: 378 DE 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,563,806
Number of Sequences: 62578
Number of extensions: 538060
Number of successful extensions: 1148
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 28
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)