Query 011527
Match_columns 484
No_of_seqs 223 out of 1368
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02530 histidine-tRNA ligase 100.0 5.7E-89 1.2E-93 721.9 50.5 443 39-483 38-486 (487)
2 COG0124 HisS Histidyl-tRNA syn 100.0 6.1E-88 1.3E-92 690.0 39.7 404 70-483 1-420 (429)
3 KOG1936 Histidyl-tRNA syntheta 100.0 1.8E-85 3.9E-90 644.6 33.6 459 1-484 1-508 (518)
4 PLN02972 Histidyl-tRNA synthet 100.0 7.8E-81 1.7E-85 669.1 46.1 409 69-484 323-753 (763)
5 PRK12420 histidyl-tRNA synthet 100.0 7.1E-79 1.5E-83 636.8 43.7 405 70-483 1-422 (423)
6 CHL00201 syh histidine-tRNA sy 100.0 1.1E-74 2.4E-79 605.0 41.1 394 72-483 3-410 (430)
7 TIGR00442 hisS histidyl-tRNA s 100.0 3.2E-71 6.9E-76 575.7 43.9 389 74-473 1-397 (397)
8 PRK12292 hisZ ATP phosphoribos 100.0 9.2E-71 2E-75 569.5 40.2 363 73-449 3-378 (391)
9 PRK00037 hisS histidyl-tRNA sy 100.0 4.2E-69 9.2E-74 562.5 37.9 382 70-483 1-403 (412)
10 PRK12421 ATP phosphoribosyltra 100.0 2.2E-66 4.7E-71 535.2 40.6 362 73-457 7-383 (392)
11 TIGR00443 hisZ_biosyn_reg ATP 100.0 4.7E-60 1E-64 476.3 33.0 300 80-387 1-313 (314)
12 PF13393 tRNA-synt_His: Histid 100.0 3.3E-59 7E-64 470.5 29.9 296 78-382 1-311 (311)
13 PRK12295 hisZ ATP phosphoribos 100.0 1.2E-56 2.5E-61 458.5 33.0 290 89-385 6-370 (373)
14 PRK12293 hisZ ATP phosphoribos 100.0 3.1E-55 6.8E-60 432.4 30.9 278 71-387 3-280 (281)
15 cd00773 HisRS-like_core Class 100.0 9.5E-55 2.1E-59 427.2 29.3 259 86-386 1-260 (261)
16 TIGR00418 thrS threonyl-tRNA s 100.0 2.7E-51 5.8E-56 444.0 30.8 344 76-483 189-555 (563)
17 COG3705 HisZ ATP phosphoribosy 100.0 1.3E-50 2.8E-55 407.2 26.4 368 72-459 2-382 (390)
18 PRK00413 thrS threonyl-tRNA sy 100.0 1.1E-49 2.3E-54 437.7 22.3 353 74-483 257-624 (638)
19 PRK12305 thrS threonyl-tRNA sy 100.0 4.5E-48 9.8E-53 419.6 30.0 345 74-483 193-561 (575)
20 PRK12444 threonyl-tRNA synthet 100.0 1.8E-47 3.9E-52 418.7 30.7 341 74-483 261-627 (639)
21 PRK14799 thrS threonyl-tRNA sy 100.0 1.6E-46 3.5E-51 398.4 28.6 357 74-483 155-523 (545)
22 PRK09194 prolyl-tRNA synthetas 100.0 7.7E-45 1.7E-49 391.9 28.9 404 73-483 33-556 (565)
23 PRK12294 hisZ ATP phosphoribos 100.0 9.9E-43 2.2E-47 340.1 26.8 255 85-367 5-268 (272)
24 PLN02908 threonyl-tRNA synthet 100.0 2.7E-42 5.9E-47 378.9 18.0 352 74-483 308-674 (686)
25 TIGR00409 proS_fam_II prolyl-t 100.0 3.2E-40 6.9E-45 353.6 27.4 404 73-483 33-561 (568)
26 PRK12325 prolyl-tRNA synthetas 100.0 7.1E-39 1.5E-43 335.5 26.2 360 74-483 34-433 (439)
27 TIGR00408 proS_fam_I prolyl-tR 100.0 1.2E-34 2.6E-39 305.5 23.3 324 69-483 20-373 (472)
28 KOG1035 eIF-2alpha kinase GCN2 100.0 6.9E-34 1.5E-38 310.6 29.7 374 80-473 925-1330(1351)
29 PRK04173 glycyl-tRNA synthetas 100.0 3.4E-34 7.4E-39 300.3 24.7 309 76-483 27-448 (456)
30 PRK08661 prolyl-tRNA synthetas 100.0 3.6E-33 7.9E-38 294.9 27.5 327 69-483 26-379 (477)
31 PLN02837 threonine-tRNA ligase 100.0 1.3E-33 2.8E-38 306.5 24.6 354 70-483 228-600 (614)
32 PRK03991 threonyl-tRNA synthet 100.0 1.1E-31 2.3E-36 289.3 32.7 341 69-483 207-584 (613)
33 COG0441 ThrS Threonyl-tRNA syn 100.0 3.3E-32 7.1E-37 287.9 17.8 351 74-483 207-572 (589)
34 cd00771 ThrRS_core Threonyl-tR 99.9 9.2E-26 2E-30 225.4 24.8 158 74-235 17-183 (298)
35 KOG1637 Threonyl-tRNA syntheta 99.9 8.9E-27 1.9E-31 232.2 15.6 340 73-472 178-533 (560)
36 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 2.1E-26 4.6E-31 222.5 15.9 148 86-236 1-159 (235)
37 COG0442 ProS Prolyl-tRNA synth 99.9 9.5E-26 2.1E-30 234.8 17.0 394 69-481 30-492 (500)
38 cd00779 ProRS_core_prok Prolyl 99.9 2.2E-26 4.8E-31 224.9 11.2 163 73-239 17-188 (255)
39 KOG2324 Prolyl-tRNA synthetase 99.9 6E-25 1.3E-29 212.9 15.0 350 73-481 38-420 (457)
40 TIGR00389 glyS_dimeric glycyl- 99.9 2.9E-23 6.2E-28 218.9 22.1 374 76-483 26-543 (551)
41 cd00772 ProRS_core Prolyl-tRNA 99.9 8.6E-24 1.9E-28 207.4 16.5 161 70-234 15-190 (264)
42 PRK14894 glycyl-tRNA synthetas 99.9 9.4E-21 2E-25 194.6 20.8 91 392-483 428-529 (539)
43 cd00774 GlyRS-like_core Glycyl 99.9 9.4E-22 2E-26 192.2 11.4 148 74-232 19-177 (254)
44 PLN02734 glycyl-tRNA synthetas 99.8 5.5E-20 1.2E-24 196.9 21.3 110 370-483 528-653 (684)
45 cd00778 ProRS_core_arch_euk Pr 99.8 7.5E-21 1.6E-25 186.6 12.3 154 70-223 15-182 (261)
46 COG0423 GRS1 Glycyl-tRNA synth 99.8 1E-19 2.2E-24 186.1 17.3 377 76-483 29-543 (558)
47 PF00587 tRNA-synt_2b: tRNA sy 99.8 4.5E-20 9.8E-25 170.1 12.8 145 89-236 1-155 (173)
48 TIGR02367 PylS pyrrolysyl-tRNA 99.8 7.2E-18 1.6E-22 171.5 14.6 133 88-229 240-375 (453)
49 cd00770 SerRS_core Seryl-tRNA 99.7 1.4E-16 3.1E-21 159.1 12.2 145 75-223 40-196 (297)
50 PRK04172 pheS phenylalanyl-tRN 99.6 5E-16 1.1E-20 165.2 11.2 150 67-223 214-404 (489)
51 PRK09537 pylS pyrolysyl-tRNA s 99.6 9.5E-15 2E-19 149.4 13.6 131 90-230 206-340 (417)
52 PTZ00326 phenylalanyl-tRNA syn 99.6 3.3E-14 7.1E-19 148.2 14.2 178 67-249 210-461 (494)
53 PF03129 HGTP_anticodon: Antic 99.5 1.8E-14 3.8E-19 119.1 8.8 84 400-483 1-87 (94)
54 cd00858 GlyRS_anticodon GlyRS 99.5 3.8E-14 8.1E-19 122.9 10.8 91 392-483 20-112 (121)
55 cd00768 class_II_aaRS-like_cor 99.5 1.4E-13 3E-18 130.0 14.3 129 90-222 2-134 (211)
56 TIGR00414 serS seryl-tRNA synt 99.5 1.4E-13 3.1E-18 143.3 15.6 145 75-223 161-317 (418)
57 cd00861 ProRS_anticodon_short 99.5 6.1E-14 1.3E-18 115.7 9.0 86 398-483 1-89 (94)
58 PRK05431 seryl-tRNA synthetase 99.5 3.6E-13 7.8E-18 140.6 14.5 147 75-229 158-318 (425)
59 cd00860 ThrRS_anticodon ThrRS 99.5 2.1E-13 4.5E-18 111.6 9.6 86 398-483 1-86 (91)
60 cd00862 ProRS_anticodon_zinc P 99.5 2.5E-13 5.4E-18 128.1 10.0 92 392-483 4-102 (202)
61 PRK14938 Ser-tRNA(Thr) hydrola 99.4 5E-13 1.1E-17 134.2 11.7 107 377-483 247-359 (387)
62 PRK09350 poxB regulator PoxA; 99.4 5.6E-12 1.2E-16 126.4 17.7 106 86-201 4-112 (306)
63 cd00738 HGTP_anticodon HGTP an 99.4 2.5E-12 5.5E-17 105.7 9.7 86 398-483 1-89 (94)
64 KOG2298 Glycyl-tRNA synthetase 99.4 8.1E-12 1.8E-16 126.0 14.9 111 373-483 460-584 (599)
65 PRK00960 seryl-tRNA synthetase 99.3 6E-12 1.3E-16 132.6 11.7 165 68-236 204-407 (517)
66 cd02426 Pol_gamma_b_Cterm C-te 99.3 9.9E-12 2.1E-16 108.5 10.1 93 391-483 20-118 (128)
67 PF12745 HGTP_anticodon2: Anti 99.2 7.8E-11 1.7E-15 115.5 9.0 90 395-484 2-99 (273)
68 KOG4163 Prolyl-tRNA synthetase 99.2 1.7E-10 3.8E-15 115.2 11.3 310 69-483 80-440 (551)
69 PLN02678 seryl-tRNA synthetase 99.2 2.3E-10 5E-15 119.3 12.8 147 79-230 166-326 (448)
70 cd00859 HisRS_anticodon HisRS 99.2 1.7E-10 3.8E-15 93.5 9.1 85 399-483 2-86 (91)
71 TIGR00415 serS_MJ seryl-tRNA s 99.1 1.1E-09 2.3E-14 114.2 14.9 161 71-235 207-406 (520)
72 PLN02320 seryl-tRNA synthetase 99.1 5.5E-10 1.2E-14 117.2 10.4 151 77-233 221-386 (502)
73 cd00776 AsxRS_core Asx tRNA sy 99.0 5.9E-08 1.3E-12 98.2 19.7 103 85-202 22-125 (322)
74 cd00669 Asp_Lys_Asn_RS_core As 98.9 8.4E-09 1.8E-13 101.6 11.5 99 88-201 2-103 (269)
75 TIGR00462 genX lysyl-tRNA synt 98.8 1.4E-07 3.1E-12 94.6 17.8 102 88-201 2-107 (304)
76 PLN02850 aspartate-tRNA ligase 98.8 3.1E-07 6.6E-12 98.4 20.9 100 87-200 225-326 (530)
77 TIGR00459 aspS_bact aspartyl-t 98.8 6.7E-07 1.5E-11 96.4 22.5 102 86-201 137-240 (583)
78 PRK06462 asparagine synthetase 98.8 1.9E-07 4.1E-12 94.9 17.4 107 86-201 29-139 (335)
79 PF00152 tRNA-synt_2: tRNA syn 98.8 1.9E-06 4.1E-11 87.9 23.6 105 86-203 21-130 (335)
80 PRK00484 lysS lysyl-tRNA synth 98.7 2.4E-06 5.1E-11 91.1 22.9 103 86-201 171-274 (491)
81 PRK12445 lysyl-tRNA synthetase 98.7 3.4E-06 7.4E-11 90.0 22.2 103 86-201 183-286 (505)
82 PTZ00417 lysine-tRNA ligase; P 98.6 9.4E-06 2E-10 87.7 23.9 100 87-201 253-355 (585)
83 TIGR00499 lysS_bact lysyl-tRNA 98.6 9.4E-06 2E-10 86.7 23.2 103 86-201 171-274 (496)
84 PLN02502 lysyl-tRNA synthetase 98.6 5.2E-06 1.1E-10 89.3 20.9 102 87-201 229-331 (553)
85 cd00777 AspRS_core Asp tRNA sy 98.6 5.2E-07 1.1E-11 89.4 11.8 100 88-201 2-103 (280)
86 COG0172 SerS Seryl-tRNA synthe 98.6 9.1E-07 2E-11 91.1 13.5 150 75-231 162-323 (429)
87 TIGR00468 pheS phenylalanyl-tR 98.5 9.9E-07 2.1E-11 88.1 13.0 143 69-223 55-204 (294)
88 cd00496 PheRS_alpha_core Pheny 98.5 2.1E-06 4.6E-11 82.1 14.4 123 90-221 3-132 (218)
89 PTZ00401 aspartyl-tRNA synthet 98.5 1.4E-05 3E-10 86.0 21.5 100 87-200 213-314 (550)
90 COG0017 AsnS Aspartyl/asparagi 98.5 1.1E-05 2.4E-10 83.2 19.3 100 86-201 133-234 (435)
91 PF01409 tRNA-synt_2d: tRNA sy 98.5 2E-06 4.4E-11 83.5 13.3 129 89-223 18-157 (247)
92 PRK02983 lysS lysyl-tRNA synth 98.4 2.7E-05 5.9E-10 90.2 21.3 102 87-201 770-872 (1094)
93 PRK00488 pheS phenylalanyl-tRN 98.3 1.5E-05 3.3E-10 80.1 14.5 139 70-220 92-236 (339)
94 COG0173 AspS Aspartyl-tRNA syn 98.2 2.3E-05 5E-10 82.0 13.3 144 87-248 141-287 (585)
95 cd00775 LysRS_core Lys_tRNA sy 98.1 3.1E-05 6.8E-10 78.7 13.5 102 87-201 8-110 (329)
96 PRK00476 aspS aspartyl-tRNA sy 98.1 2.1E-05 4.5E-10 85.5 12.2 102 86-201 140-243 (588)
97 PLN02903 aminoacyl-tRNA ligase 98.0 3.5E-05 7.5E-10 83.9 12.1 101 87-201 203-306 (652)
98 KOG2509 Seryl-tRNA synthetase 98.0 3.6E-05 7.8E-10 78.3 10.9 146 76-223 172-331 (455)
99 TIGR00458 aspS_arch aspartyl-t 98.0 6.4E-05 1.4E-09 79.0 12.8 102 86-201 132-234 (428)
100 PLN02853 Probable phenylalanyl 98.0 0.00014 2.9E-09 76.5 14.2 134 87-223 220-396 (492)
101 COG2269 Truncated, possibly in 98.0 0.00011 2.4E-09 71.0 12.2 147 86-248 15-161 (322)
102 PRK05159 aspC aspartyl-tRNA sy 98.0 8.1E-05 1.8E-09 78.6 12.6 102 86-201 135-237 (437)
103 PRK12820 bifunctional aspartyl 97.9 6.3E-05 1.4E-09 82.7 11.7 103 86-201 155-258 (706)
104 PRK03932 asnC asparaginyl-tRNA 97.9 7.6E-05 1.7E-09 79.0 11.8 102 86-201 132-242 (450)
105 COG0016 PheS Phenylalanyl-tRNA 97.9 0.00017 3.6E-09 72.3 13.0 143 70-221 95-244 (335)
106 PTZ00385 lysyl-tRNA synthetase 97.9 0.00014 3E-09 79.3 12.6 103 86-201 232-335 (659)
107 PRK09616 pheT phenylalanyl-tRN 97.6 0.00069 1.5E-08 73.7 13.8 129 89-222 360-491 (552)
108 TIGR00457 asnS asparaginyl-tRN 97.6 0.00042 9E-09 73.4 11.4 101 87-201 136-245 (453)
109 PTZ00425 asparagine-tRNA ligas 97.5 0.0012 2.7E-08 71.2 12.4 32 87-118 215-246 (586)
110 KOG2411 Aspartyl-tRNA syntheta 97.3 0.00078 1.7E-08 69.5 8.2 101 87-201 178-281 (628)
111 PLN02603 asparaginyl-tRNA synt 97.2 0.0022 4.8E-08 69.3 11.4 101 87-200 226-355 (565)
112 cd00769 PheRS_beta_core Phenyl 97.2 0.0026 5.6E-08 59.8 9.8 127 91-222 3-139 (198)
113 PLN02221 asparaginyl-tRNA synt 97.2 0.0045 9.7E-08 67.0 12.6 32 87-118 171-202 (572)
114 TIGR00470 sepS O-phosphoseryl- 96.9 0.0053 1.1E-07 63.9 9.6 82 140-223 180-262 (533)
115 PLN02532 asparagine-tRNA synth 96.9 0.0072 1.6E-07 65.8 11.1 31 87-117 235-265 (633)
116 COG1190 LysU Lysyl-tRNA synthe 96.6 0.0047 1E-07 64.7 7.3 97 87-196 180-277 (502)
117 PLN02788 phenylalanine-tRNA sy 96.2 0.078 1.7E-06 55.0 13.4 108 82-199 62-179 (402)
118 TIGR00471 pheT_arch phenylalan 96.1 0.063 1.4E-06 58.6 12.5 147 67-222 344-493 (551)
119 KOG2784 Phenylalanyl-tRNA synt 96.1 0.0028 6.1E-08 63.2 1.8 131 90-223 214-387 (483)
120 KOG1885 Lysyl-tRNA synthetase 96.0 0.0045 9.7E-08 63.7 3.1 116 87-219 225-341 (560)
121 PRK07080 hypothetical protein; 96.0 0.076 1.6E-06 52.9 11.4 159 75-238 32-223 (317)
122 PLN02265 probable phenylalanyl 95.4 0.083 1.8E-06 58.1 10.1 149 67-223 379-531 (597)
123 TIGR00472 pheT_bact phenylalan 94.1 0.35 7.6E-06 55.2 11.2 125 95-223 498-632 (798)
124 COG0442 ProS Prolyl-tRNA synth 93.0 0.15 3.3E-06 54.3 5.5 91 391-481 278-378 (500)
125 PRK00629 pheT phenylalanyl-tRN 92.6 0.85 1.8E-05 52.1 11.2 149 67-223 468-625 (791)
126 KOG0554 Asparaginyl-tRNA synth 92.4 0.28 6.1E-06 50.0 6.1 105 84-202 129-241 (446)
127 CHL00192 syfB phenylalanyl-tRN 92.3 0.7 1.5E-05 51.9 9.8 142 67-222 380-532 (704)
128 KOG0556 Aspartyl-tRNA syntheta 90.6 0.41 8.9E-06 48.9 5.1 95 88-197 229-325 (533)
129 TIGR00469 pheS_mito phenylalan 89.8 2.9 6.2E-05 44.1 10.8 106 90-200 44-166 (460)
130 PRK06253 O-phosphoseryl-tRNA s 88.8 1.5 3.2E-05 46.9 7.8 83 138-223 179-263 (529)
131 COG2024 Phenylalanyl-tRNA synt 83.2 0.59 1.3E-05 47.4 1.4 87 139-229 179-266 (536)
132 COG0072 PheT Phenylalanyl-tRNA 79.7 3.8 8.3E-05 45.7 6.4 90 89-181 352-443 (650)
133 PF01409 tRNA-synt_2d: tRNA sy 67.6 22 0.00049 34.6 7.7 81 303-386 139-227 (247)
134 KOG0555 Asparaginyl-tRNA synth 65.1 20 0.00043 37.0 6.8 98 87-199 243-341 (545)
135 TIGR00470 sepS O-phosphoseryl- 63.7 37 0.0008 36.2 8.7 83 302-386 244-331 (533)
136 TIGR00559 pdxJ pyridoxine 5'-p 55.1 48 0.001 31.9 7.3 57 398-456 84-152 (237)
137 PRK03972 ribosomal biogenesis 53.9 1.3E+02 0.0027 28.6 9.7 70 404-473 4-74 (208)
138 PF03740 PdxJ: Pyridoxal phosp 53.4 52 0.0011 31.8 7.2 56 398-455 85-152 (239)
139 cd00003 PNPsynthase Pyridoxine 52.3 58 0.0013 31.4 7.3 44 411-456 109-152 (234)
140 COG3705 HisZ ATP phosphoribosy 50.4 1.2 2.5E-05 46.2 -4.7 62 320-385 322-384 (390)
141 KOG2472 Phenylalanyl-tRNA synt 48.9 59 0.0013 34.7 7.3 53 143-196 443-496 (578)
142 COG0013 AlaS Alanyl-tRNA synth 48.5 1E+02 0.0022 35.5 9.6 113 90-231 8-129 (879)
143 cd00775 LysRS_core Lys_tRNA sy 48.1 19 0.0004 36.7 3.6 28 361-388 287-314 (329)
144 cd00669 Asp_Lys_Asn_RS_core As 47.0 13 0.00027 36.8 2.1 19 370-388 236-254 (269)
145 PRK05265 pyridoxine 5'-phospha 45.7 84 0.0018 30.4 7.3 44 411-456 112-155 (239)
146 cd00777 AspRS_core Asp tRNA sy 43.5 15 0.00032 36.5 2.0 19 370-388 247-265 (280)
147 PF02780 Transketolase_C: Tran 40.4 62 0.0013 27.4 5.2 33 399-432 10-42 (124)
148 TIGR00640 acid_CoA_mut_C methy 38.1 1.9E+02 0.0042 25.1 8.0 58 399-456 3-61 (132)
149 cd02067 B12-binding B12 bindin 36.2 2.2E+02 0.0047 23.7 7.9 40 415-454 17-56 (119)
150 COG2179 Predicted hydrolase of 35.5 90 0.0019 28.5 5.4 29 403-431 39-68 (175)
151 PF03853 YjeF_N: YjeF-related 35.4 2.1E+02 0.0046 25.8 8.2 57 399-455 26-88 (169)
152 cd02071 MM_CoA_mut_B12_BD meth 35.1 2.2E+02 0.0047 24.1 7.7 43 414-456 16-58 (122)
153 PF00731 AIRC: AIR carboxylase 33.3 3.2E+02 0.007 24.4 8.6 56 400-455 2-62 (150)
154 PF01520 Amidase_3: N-acetylmu 32.7 1.4E+02 0.0031 26.7 6.6 47 410-456 26-75 (175)
155 PRK02261 methylaspartate mutas 32.5 3.2E+02 0.0068 23.9 8.4 53 401-453 6-59 (137)
156 PF15640 Tox-MPTase4: Metallop 31.6 79 0.0017 27.3 4.2 36 303-340 21-63 (132)
157 COG0854 PdxJ Pyridoxal phospha 31.1 1.6E+02 0.0036 28.1 6.6 56 398-455 85-152 (243)
158 PLN02683 pyruvate dehydrogenas 31.0 1.8E+02 0.004 29.9 7.7 57 399-458 229-289 (356)
159 TIGR00458 aspS_arch aspartyl-t 31.0 28 0.00061 36.8 1.8 19 370-388 391-409 (428)
160 cd02071 MM_CoA_mut_B12_BD meth 30.9 2.8E+02 0.0061 23.4 7.7 71 378-456 38-110 (122)
161 cd07995 TPK Thiamine pyrophosp 29.4 2.3E+02 0.005 26.5 7.6 36 421-456 60-98 (208)
162 PF13380 CoA_binding_2: CoA bi 29.1 1.6E+02 0.0034 24.9 5.8 51 397-450 54-104 (116)
163 PRK05159 aspC aspartyl-tRNA sy 28.7 34 0.00073 36.3 1.9 47 339-388 351-418 (437)
164 PLN02221 asparaginyl-tRNA synt 28.4 35 0.00075 37.5 2.0 33 168-200 327-360 (572)
165 PRK00476 aspS aspartyl-tRNA sy 27.9 34 0.00074 37.8 1.8 33 357-389 514-546 (588)
166 PRK03932 asnC asparaginyl-tRNA 27.7 36 0.00079 36.2 2.0 20 370-389 413-432 (450)
167 cd04724 Tryptophan_synthase_al 27.4 3.2E+02 0.007 26.2 8.4 70 377-456 91-160 (242)
168 cd02696 MurNAc-LAA N-acetylmur 27.1 2.7E+02 0.0058 24.8 7.4 48 410-457 27-77 (172)
169 TIGR00615 recR recombination p 25.3 4.6E+02 0.01 24.6 8.5 67 355-429 96-167 (195)
170 PRK00076 recR recombination pr 25.1 4.7E+02 0.01 24.5 8.6 66 355-429 96-166 (196)
171 TIGR00106 uncharacterized prot 25.0 3.9E+02 0.0084 21.9 7.6 56 400-455 4-73 (97)
172 CHL00144 odpB pyruvate dehydro 24.9 2.3E+02 0.005 28.7 7.1 57 399-458 202-262 (327)
173 TIGR00457 asnS asparaginyl-tRN 24.7 44 0.00096 35.6 1.9 19 370-388 416-434 (453)
174 cd02067 B12-binding B12 bindin 24.5 3.8E+02 0.0081 22.2 7.4 69 378-454 38-108 (119)
175 PF02310 B12-binding: B12 bind 23.8 2.6E+02 0.0057 23.0 6.3 41 376-428 14-54 (121)
176 cd02065 B12-binding_like B12 b 23.5 4.2E+02 0.0091 21.8 7.8 9 450-458 80-88 (125)
177 PRK13844 recombination protein 23.5 3.3E+02 0.0071 25.7 7.2 66 355-429 100-170 (200)
178 COG2136 IMP4 Predicted exosome 22.9 6.3E+02 0.014 23.6 9.1 65 407-471 9-74 (191)
179 COG4981 Enoyl reductase domain 22.7 2.9E+02 0.0063 30.1 7.3 99 347-446 59-173 (717)
180 PF08357 SEFIR: SEFIR domain; 22.6 3.3E+02 0.0072 23.6 7.0 55 401-457 3-67 (150)
181 KOG2780 Ribosome biogenesis pr 22.6 5.1E+02 0.011 25.5 8.3 76 400-476 98-174 (302)
182 PF02797 Chal_sti_synt_C: Chal 22.1 5.7E+02 0.012 22.8 9.5 62 191-252 22-88 (151)
183 COG2185 Sbm Methylmalonyl-CoA 21.9 3.9E+02 0.0085 23.7 7.0 45 400-444 14-59 (143)
184 cd00248 Mth938-like Mth938-lik 21.8 82 0.0018 26.4 2.7 35 399-433 53-87 (109)
185 TIGR01162 purE phosphoribosyla 21.8 2.7E+02 0.0059 25.1 6.1 54 402-455 2-60 (156)
186 COG3958 Transketolase, C-termi 21.1 3.2E+02 0.0069 27.4 6.8 57 399-458 193-253 (312)
187 TIGR02883 spore_cwlD N-acetylm 21.0 3.8E+02 0.0083 24.5 7.3 47 411-457 29-92 (189)
188 TIGR00288 conserved hypothetic 20.9 4E+02 0.0088 24.1 7.0 54 398-458 105-158 (160)
189 PF02091 tRNA-synt_2e: Glycyl- 20.7 3.5E+02 0.0076 26.6 6.9 55 165-224 43-101 (284)
190 PLN02532 asparagine-tRNA synth 20.7 63 0.0014 35.9 2.1 34 168-201 390-424 (633)
191 PLN03194 putative disease resi 20.7 5.2E+02 0.011 24.1 7.8 61 396-457 24-90 (187)
192 PRK11892 pyruvate dehydrogenas 20.7 3.3E+02 0.0071 29.2 7.5 57 399-458 341-401 (464)
193 cd02070 corrinoid_protein_B12- 20.4 6.8E+02 0.015 23.1 9.8 56 399-454 83-139 (201)
194 PF04430 DUF498: Protein of un 20.4 75 0.0016 26.6 2.1 35 398-432 53-87 (110)
195 COG0022 AcoB Pyruvate/2-oxoglu 20.3 4E+02 0.0086 26.9 7.3 56 399-457 201-260 (324)
196 PTZ00326 phenylalanyl-tRNA syn 20.3 3.8E+02 0.0082 29.0 7.8 80 302-386 393-478 (494)
197 CHL00200 trpA tryptophan synth 20.0 5.9E+02 0.013 24.9 8.7 71 376-456 105-175 (263)
No 1
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=5.7e-89 Score=721.91 Aligned_cols=443 Identities=75% Similarity=1.216 Sum_probs=406.6
Q ss_pred hhhhhccccccCCCcccccccCCCCCCcccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHH
Q 011527 39 SLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (484)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~ 118 (484)
..||.+.+ .+++|+++.+.+|++.+.+++|+++++|+||+||+|+++..+++|++.++++|++|||++|.||+||+.+
T Consensus 38 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~e 115 (487)
T PLN02530 38 GRCAASAA--AGGGRSGGTTAPPSVQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEE 115 (487)
T ss_pred cchhhccc--cccccCCCCCCCCCCccccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHH
Confidence 34444433 3378888888878888799999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEE
Q 011527 119 LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDII 198 (484)
Q Consensus 119 l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eii 198 (484)
+|.++.|+...++||+|+|++|+.++||||+|+|+||+++++....++|+||||+|+|||+|+++.||+|||+|+|+|+|
T Consensus 116 l~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEii 195 (487)
T PLN02530 116 LYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDII 195 (487)
T ss_pred HhccccCcccccceEEEECCCCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEe
Confidence 99988888888999999999999999999999999999999876557899999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCC
Q 011527 199 GVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGM 278 (484)
Q Consensus 199 g~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~ 278 (484)
|.++..+|+|+|.++.++|+.||+++.++.|+|||+++++.+|+.++++++.+..++.+++++++.+.+++++.|...|+
T Consensus 196 G~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~ 275 (487)
T PLN02530 196 GVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGV 275 (487)
T ss_pred CCCCcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCC
Confidence 99999999999999999999999964469999999999999999999999888899999999999999999999999999
Q ss_pred CHHHHHHHHHHccCCChhhhh------HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCccee
Q 011527 279 SEAAIEELLRVLSIKSLTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAI 352 (484)
Q Consensus 279 ~~~~~~~l~~l~~~~~~~~l~------~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i 352 (484)
+.+..+.+++++..+.++.+. .+++++|++++++++.+|+..++.|||+++||++||||+|||+|+..|...+|
T Consensus 276 ~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I 355 (487)
T PLN02530 276 SEEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAI 355 (487)
T ss_pred CHHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCccee
Confidence 998888887777654433321 36899999999999999998889999999999999999999999855666899
Q ss_pred ecCccccHhHhhcCCCCCceecccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe
Q 011527 353 CGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVL 432 (484)
Q Consensus 353 ~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~ 432 (484)
|+|||||+|++.||+++.||||||+|+++|++++.+.+..|.+..+.+|+|++++++...+|++++++||++|++|++++
T Consensus 356 ~gGGRYD~Li~~fgg~~~pAvGFa~g~~~l~~~l~~~g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~ 435 (487)
T PLN02530 356 CGGGRYDRLLSTFGGEDTPACGFGFGDAVIVELLKEKGLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVL 435 (487)
T ss_pred eecccHHHHHHHhCCCCCCeeEEEEhHHHHHHHHHhcCCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEec
Confidence 99999999999999888999999999999999998877777777788999999998888999999999999999999998
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 433 ESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 433 ~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
.+.++++++++|++.|+++++++|++|+++++|+|||+.+++|.+|+++++
T Consensus 436 ~~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 436 EPKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 888899999999999999999999999999999999999999999999876
No 2
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-88 Score=689.99 Aligned_cols=404 Identities=37% Similarity=0.627 Sum_probs=358.6
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCCCCeEeeC
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALR 146 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~G~~l~LR 146 (484)
|+.++.|+||+||+|+++..|++|++.++++|++|||.+|.||+||+.++|.+++|+. +.++||+|.|++|+.++||
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLR 80 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALR 80 (429)
T ss_pred CCCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEec
Confidence 4668899999999999999999999999999999999999999999999999989987 6799999999999999999
Q ss_pred CCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCc
Q 011527 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD 226 (484)
Q Consensus 147 pD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~ 226 (484)
||+|+|+||+++.|....+.|+|+||+|+|||||+||.||+|||+|+|+|+||.+++.+|||+|.++.+++++||+. +
T Consensus 81 pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~--~ 158 (429)
T COG0124 81 PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIG--G 158 (429)
T ss_pred ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCC--c
Confidence 99999999999999887778999999999999999999999999999999999999999999999999999999998 6
Q ss_pred eEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC------------C
Q 011527 227 VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK------------S 294 (484)
Q Consensus 227 ~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~------------~ 294 (484)
++|+|||+++++++++.+|+ +.+..+..++|+.++. ++..|.+.+......+.+..+.... -
T Consensus 159 ~~l~iN~~g~l~~~~~~~gi--~~~~~l~~~ldk~~k~----~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i 232 (429)
T COG0124 159 FTLEINSRGILEGRLEYLGI--DQREALLRYLDKLDKI----GKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPEL 232 (429)
T ss_pred EEEEEcCcccHHHHHHhhcc--hhHHHHHHHHhhhhhH----HHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHh
Confidence 99999999999999999999 6778888888888754 3333333222222222222211111 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCcee
Q 011527 295 LTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPAC 373 (484)
Q Consensus 295 ~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pav 373 (484)
++.+..++++++.++.++|+.+|++ +.+||+++||+|||||+|||++... |...+||+|||||+|++.|||+++|||
T Consensus 233 ~~~~~~e~~~~~~~v~~~L~~~g~~--~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pav 310 (429)
T COG0124 233 LDYLDEESLEHLEELLALLDALGIS--YEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAV 310 (429)
T ss_pred hhhccHHHHHHHHHHHHHHHHcCCC--EEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCce
Confidence 2333368899999999999999965 9999999999999999999999753 345799999999999999999999999
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEE
Q 011527 374 GFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLI 453 (484)
Q Consensus 374 Gfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~i 453 (484)
|||+|+|||+.+|.+.+...+...+++|+|++++++...++++++++||++|++|++++..+++++|+++|++.|++++|
T Consensus 311 GFaiGveRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~~~v 390 (429)
T COG0124 311 GFAIGVERLILALEEEGKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGARFAV 390 (429)
T ss_pred eEehHHHHHHHHHHHcCCCCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHCCCCEEE
Confidence 99999999999999987533335678999999999878899999999999999999999988899999999999999999
Q ss_pred EEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 454 LVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 454 iig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|+|++|.++|+|+||||.+|+|.+++++++
T Consensus 391 iiGe~E~~~g~v~vKdl~t~eq~~v~~~~~ 420 (429)
T COG0124 391 ILGEDELANGVVTVKDLATGEQEEVPLDEL 420 (429)
T ss_pred EEcchHHhcCCEEEeeCCCCccceecHHHH
Confidence 999999999999999999999999999876
No 3
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-85 Score=644.60 Aligned_cols=459 Identities=32% Similarity=0.530 Sum_probs=401.2
Q ss_pred CCccccc---cccccchhhccc--CCCCC-CccccccccccCcchhhhhccccccCCCcccccccCCCCCCccccccccc
Q 011527 1 MPAIHSS---LSFYMKPLFLSN--SSLFP-RKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVN 74 (484)
Q Consensus 1 ~~~~~~~---~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (484)
|.|+|.. .+....|+++-. +|+.+ ++|+.+. +.+|| +++.+||+++. .++++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~llr~l~~~~a~~~~~~~~v------a~~~~----~~~~~~~~~~~---------~~~k~~lK 61 (518)
T KOG1936|consen 1 MMAIHLVTTRESISFQGILLRDLKSSCASPEQISEEV------ALILA----LKNGLGRSGSI---------FKKKFSLK 61 (518)
T ss_pred CcchHHHHHHHHHhhhHHHHhhhhhccCChhHhhHHH------HHHHH----HhcccCCCCCC---------cCcceeec
Confidence 6677654 444556555442 35544 6677666 56787 44545666544 46678899
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLA 154 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~ia 154 (484)
+|+|||||-|++|.+|++|.+++.++|++||+..|+||+||-.+++..++|++. +.+|.|.|++|+.++||||+|+|+|
T Consensus 62 tPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfA 140 (518)
T KOG1936|consen 62 TPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFA 140 (518)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHH
Confidence 999999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeeEEEecCeeeeCcC--CCCCccceEEeEEEEEc-CCChhhHHHHHHHHHHHHHHcCCCCCceEEEe
Q 011527 155 RLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRI 231 (484)
Q Consensus 155 R~~~~~~~~~~lPlk~yyig~vfR~e~~--~~gr~rEf~Q~g~eiig-~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i 231 (484)
||++.|+.. .+|+|+|++|||.+.| .+||+|||||||+||.| .+...+|+|++.++.++|+.||+. +|.|++
T Consensus 141 RylAmNki~---sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Ig--d~~iKv 215 (518)
T KOG1936|consen 141 RYLAMNKIT---SIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIG--DYGIKV 215 (518)
T ss_pred HHHHHcccc---cceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCcc--ceEEEe
Confidence 999998653 7999999999999887 68999999999999999 577889999999999999999998 899999
Q ss_pred CCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHH-HhcCCCHHHHHHHHHHccCCChhhh------------
Q 011527 232 SSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKSLTEL------------ 298 (484)
Q Consensus 232 ~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L-~~~g~~~~~~~~l~~l~~~~~~~~l------------ 298 (484)
||+.+++++++.||+|++.+..+|..+||++|.+|+++++++ .+.|++++.+++|.+++..++...+
T Consensus 216 NhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~ 295 (518)
T KOG1936|consen 216 NHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQ 295 (518)
T ss_pred cHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccc
Confidence 999999999999999999999999999999999999999988 5699999999999888776543222
Q ss_pred ---hHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC------------------CCcceeecCcc
Q 011527 299 ---EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD------------------GKLRAICGGGR 357 (484)
Q Consensus 299 ---~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~------------------g~~~~i~~GGR 357 (484)
..+++++|+.++++++.+|+..+|.||+|++||+|||||++||++... +.-.++|+|||
T Consensus 296 n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGR 375 (518)
T KOG1936|consen 296 NEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGR 375 (518)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCcc
Confidence 168899999999999999999999999999999999999999998631 11268999999
Q ss_pred ccHhHhhcCCC--CCceecccchHHHHHHHHHHcCCC---CCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe
Q 011527 358 YDQLLSTFGGD--DIPACGFGFGDAVILELLKEKGLL---PPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVL 432 (484)
Q Consensus 358 YD~L~~~f~~~--~~pavGfsigierl~~~l~e~~~~---p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~ 432 (484)
||+|+..|+.+ .+|+||+++|++||+.+|.+.... .-....++|+|...++....+++++.+.||.+||.+++.+
T Consensus 376 YDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~y 455 (518)
T KOG1936|consen 376 YDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLY 455 (518)
T ss_pred hhhHHHHhccccCcCCccceeehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhhh
Confidence 99999999865 599999999999999999865211 1113347899999999889999999999999999999887
Q ss_pred C-CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcCC
Q 011527 433 E-SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 433 ~-~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
. +.++-+|+.+|.+.|||++||+|++|+++|.|+||++.++++..++.+++|
T Consensus 456 k~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v 508 (518)
T KOG1936|consen 456 KANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFV 508 (518)
T ss_pred hcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHH
Confidence 6 457999999999999999999999999999999999999999999988764
No 4
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=7.8e-81 Score=669.10 Aligned_cols=409 Identities=27% Similarity=0.487 Sum_probs=366.3
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCC
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPE 148 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD 148 (484)
.++..++|+||+||+|+++.++++|++.++++|++|||++|+||+||+.++|..++|++ .++||+|+|++|+.++||||
T Consensus 323 ~~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged-~k~mY~f~D~gGr~LaLRPD 401 (763)
T PLN02972 323 VRRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED-SKLIYDLADQGGELCSLRYD 401 (763)
T ss_pred hhcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc-hhheEEEECCCCCEEEeCCC
Confidence 36667999999999999999999999999999999999999999999999998877876 46899999999999999999
Q ss_pred ChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcC-CChhhHHHHHHHHHHHHHHcCCCCCce
Q 011527 149 LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGITASDV 227 (484)
Q Consensus 149 ~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~-~~~~adaEvi~l~~~~l~~lgl~~~~~ 227 (484)
+|+|+||+++++.. .|+|+||+|+|||+++|+.||+|||+|||+||||. ++..+|+|+|.++.++|+.||+. +|
T Consensus 402 lTvPiAR~vA~n~~---~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~--df 476 (763)
T PLN02972 402 LTVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIG--TY 476 (763)
T ss_pred ChHHHHHHHHhCCC---CcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCC--ce
Confidence 99999999998754 38999999999999999999999999999999997 55578999999999999999997 79
Q ss_pred EEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHH-HhcCCCHHHHHHHHHHccCCC-----hhhh---
Q 011527 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS-----LTEL--- 298 (484)
Q Consensus 228 ~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L-~~~g~~~~~~~~l~~l~~~~~-----~~~l--- 298 (484)
.|+|||+++++++|+.++++++.+..++..++++++.+++++++.| ...|++.+..+.|.+++.... ++.+
T Consensus 477 ~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~ 556 (763)
T PLN02972 477 EVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQE 556 (763)
T ss_pred EEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 9999999999999999999998888999999999999998887766 568899888888777764321 1111
Q ss_pred ---------hHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCC
Q 011527 299 ---------EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDD 369 (484)
Q Consensus 299 ---------~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~ 369 (484)
..+++++|++++++|+.+|+.++|.|||+++||++||||+|||+|.+.+...+||+|||||+|++.|++++
T Consensus 557 ~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~FgG~~ 636 (763)
T PLN02972 557 GSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGMFSGKQ 636 (763)
T ss_pred hHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHHHhcCCCC
Confidence 14679999999999999999878999999999999999999999975322368999999999999998889
Q ss_pred CceecccchHHHHHHHHHHcCCCCC---CCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKEKGLLPP---LNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAAR 446 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e~~~~p~---~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~ 446 (484)
+|||||||++|||+.++.+.+..+. ...++||+|++.+++...++++++++||++||+|++.. ..++++++++|++
T Consensus 637 vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~-~~kl~kq~~~A~k 715 (763)
T PLN02972 637 VPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKV-STRKAKHLKRAKE 715 (763)
T ss_pred CCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHH
Confidence 9999999999999999987654321 23457999999988888899999999999999999754 6689999999999
Q ss_pred cCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcCC
Q 011527 447 INAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 447 ~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
.||++++|+|++|+++|+|+|||+.+++|.+|++++++
T Consensus 716 ~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv 753 (763)
T PLN02972 716 SGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFV 753 (763)
T ss_pred CCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHH
Confidence 99999999999999999999999999999999988764
No 5
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.1e-79 Score=636.75 Aligned_cols=405 Identities=31% Similarity=0.539 Sum_probs=365.4
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhc--cccccceEEEEeCCCCeEeeCC
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG--EEIRDQLYCFEDRGNRRVALRP 147 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g--~~~~~~~~~~~D~~G~~l~LRp 147 (484)
||.+++|+|++||+|+++.+++++++.++++|++|||++|.||+|||+++|..++| +...++||+|+|++|+.++|||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRp 80 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRY 80 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccc
Confidence 67789999999999999999999999999999999999999999999999976543 4567899999999999999999
Q ss_pred CChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCce
Q 011527 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (484)
Q Consensus 148 D~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~ 227 (484)
|+|+|+||+++++. ..++|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.||+ ++
T Consensus 81 D~T~~iaR~va~~~-~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~---~~ 156 (423)
T PRK12420 81 DLTIPFAKVVAMNP-NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNL---EV 156 (423)
T ss_pred cccHHHHHHHHhCc-CCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCC---CE
Confidence 99999999999874 346799999999999999999999999999999999999999999999999999999998 48
Q ss_pred EEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC---hhhh------
Q 011527 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS---LTEL------ 298 (484)
Q Consensus 228 ~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~---~~~l------ 298 (484)
.|+|||+++++++++.++++++.+..++.++|++++++++++.+.|...+++.+..+.|.+++..+. ++.+
T Consensus 157 ~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 236 (423)
T PRK12420 157 TIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFNN 236 (423)
T ss_pred EEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhccC
Confidence 9999999999999999999999888888888999999999999889888999888888877764332 2211
Q ss_pred --hHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCC-CcceeecCccccHhHhhcCC--CCCcee
Q 011527 299 --EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDG-KLRAICGGGRYDQLLSTFGG--DDIPAC 373 (484)
Q Consensus 299 --~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g-~~~~i~~GGRYD~L~~~f~~--~~~pav 373 (484)
..+++++|+++.++|+.+|+..++.||++++|+++||||+|||+|.+++ ...+||+|||||+|+++|++ .+.|||
T Consensus 237 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pAv 316 (423)
T PRK12420 237 PLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPTV 316 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCCce
Confidence 2578899999999999999987899999999999999999999998643 34689999999999999976 468999
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHH-CCCeEEEEeCCCCHHHHHHHHHHcCCCEE
Q 011527 374 GFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRG-KGQSVDLVLESKPLKWVFKRAARINAQRL 452 (484)
Q Consensus 374 Gfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~-~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~ 452 (484)
|||+++|||+.++...+.. ..+.||+|++.++. ..+.+++++||+ +|++|+++..+.++++++++|++.|++++
T Consensus 317 Gfa~~~~~l~~~l~~~~~~---~~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~~g~~~i 391 (423)
T PRK12420 317 GISFGLDVIYTALSQKETI---SSTADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELAGRKLKKALNYANKENIPYV 391 (423)
T ss_pred eEEEcHHHHHHHHHhcCCC---CCCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecCCcCHHHHHHHHHHcCCCEE
Confidence 9999999999998865532 24689999998653 469999999999 99999999888899999999999999999
Q ss_pred EEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 453 ILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 453 iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+++|++|.++++|+||++.++++.+|+++++
T Consensus 392 viig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 392 LIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred EEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 9999999999999999999999999999886
No 6
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-74 Score=604.95 Aligned_cols=394 Identities=23% Similarity=0.388 Sum_probs=323.7
Q ss_pred cccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCCCCeEeeCCC
Q 011527 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (484)
Q Consensus 72 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~G~~l~LRpD 148 (484)
..++|+||+||+|.++..++++++.++++|++|||++|.||+||+.++|.++.|+. +.++||+|+|++|+.++||||
T Consensus 3 ~~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd 82 (430)
T CHL00201 3 KIQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPE 82 (430)
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCC
Confidence 35789999999999999999999999999999999999999999999998877754 458999999999999999999
Q ss_pred ChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCce
Q 011527 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (484)
Q Consensus 149 ~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~ 227 (484)
+|+|+||+++++.. ...+|+|+||+|+|||+|+||.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.||++ ++
T Consensus 83 ~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~--~~ 160 (430)
T CHL00201 83 GTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVK--NL 160 (430)
T ss_pred CcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCC--ce
Confidence 99999999888755 3467999999999999999999999999999999999999999999999999999999997 79
Q ss_pred EEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHh----hccCCHHHHHH----HHHhcCCC-HHHHHHHHHHccCCChhhh
Q 011527 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDK----IEKLPLDVIKN----DLKSAGMS-EAAIEELLRVLSIKSLTEL 298 (484)
Q Consensus 228 ~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~----~~~~~~~~l~~----~L~~~g~~-~~~~~~l~~l~~~~~~~~l 298 (484)
+|+|||+++++.... ....+..++.+ ++....+.+.. .+...+.. .+.++..-.+ .+.+
T Consensus 161 ~i~l~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l-----~~~~ 228 (430)
T CHL00201 161 ILDINSIGKLEDRQS-------YQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKI-----SDFL 228 (430)
T ss_pred EEEECCCCchhhHHH-------HHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHH-----Hhhh
Confidence 999999888763100 00011111111 11000111110 01111101 0111111111 1122
Q ss_pred hHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCceecccc
Q 011527 299 EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPACGFGF 377 (484)
Q Consensus 299 ~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pavGfsi 377 (484)
..+++++|.++.++++.+|+. +.+|++++||++||||+|||++..+ +...+||+|||||+|++.||+++.||||||+
T Consensus 229 ~~~~~~~l~~~~~~l~~~g~~--~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~ 306 (430)
T CHL00201 229 SLESTEHFYDVCTYLNLLNIP--YKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAI 306 (430)
T ss_pred hHHHHHHHHHHHHHHHHcCCc--EEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEe
Confidence 357888999999999999985 9999999999999999999999743 4557899999999999999988899999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcC
Q 011527 378 GDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 378 gierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
|+|||+.++.+.... +..+.+|+|++++++...+|++++++||++|++|++++.+.++++++++|++.|+++++++|+
T Consensus 307 g~erl~~~l~~~~~~--~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 307 GLERLLLIAKDNIIL--PKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred cHHHHHHHHhccccC--CCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHcCCCEEEEEec
Confidence 999999988764322 234578999999888889999999999999999999988888999999999999999999999
Q ss_pred CccccCeEEEEECCCCceeeeccCcC
Q 011527 458 TEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 458 ~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+|+++++|+|||+.+++|.+++++++
T Consensus 385 ~E~~~~~vtvk~l~~~~q~~i~~~~~ 410 (430)
T CHL00201 385 NEIMDNCITIKWLDEQVQENAQYSNF 410 (430)
T ss_pred hHHhCCcEEEEECCCCCcEEEcHHHH
Confidence 99999999999999999999998875
No 7
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=3.2e-71 Score=575.75 Aligned_cols=389 Identities=35% Similarity=0.590 Sum_probs=342.3
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCCCCeEeeCCCCh
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPELT 150 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~G~~l~LRpD~T 150 (484)
++|+|++||+|.++.+++++++.++++|++|||++|.||+||+.++|..+.|+. ..++||+|.|++|+.++||||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 479999999999999999999999999999999999999999999998766554 45889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 011527 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (484)
Q Consensus 151 ~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~ 230 (484)
+|+||+++++....++|+|+||+|+|||+|+++.||+|||+|+|+|+||.++..+|+|+|.++.++|+.+|++ ++.|+
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~--~~~i~ 158 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK--DFTLE 158 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC--ceEEE
Confidence 9999999988665678999999999999999999999999999999999999999999999999999999996 79999
Q ss_pred eCCHHHHHHHHHhCCCCchhhhhHhHHHHh-hccCCHHHHHHHHHh-cCCCHHHHHHHHHHccCC-C-hhhhhHHHHHHH
Q 011527 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKS-AGMSEAAIEELLRVLSIK-S-LTELEGEAVADL 306 (484)
Q Consensus 231 i~~~~il~~~l~~~g~~~~~~~~v~~~l~~-~~~~~~~~l~~~L~~-~g~~~~~~~~l~~l~~~~-~-~~~l~~~~~~~L 306 (484)
|||+++++.+++ .+..++.++++ +++.+.+.+...+.. ++++.+..+.+..++... . .+.+..+++++|
T Consensus 159 i~~~~i~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (397)
T TIGR00442 159 INSLGILEGRLE-------YREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHF 231 (397)
T ss_pred ecCcccHHHHHH-------HHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHH
Confidence 999999999987 35566777777 566666655555543 556665555555554321 1 122336889999
Q ss_pred HHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCceecccchHHHHHHH
Q 011527 307 KLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILEL 385 (484)
Q Consensus 307 ~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~~~ 385 (484)
+++.++++.+|+. +.|||+++|+++||||++||+|.++ |...+||+|||||+|++.|++...||||||+++|||+++
T Consensus 232 ~~l~~~l~~~~~~--i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~~~~l~~~ 309 (397)
T TIGR00442 232 EELKELLDALGIP--YKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIGIERLLLL 309 (397)
T ss_pred HHHHHHHHHcCCC--EEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeecHHHHHHH
Confidence 9999999999985 9999999999999999999999853 334789999999999999998789999999999999999
Q ss_pred HHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeE
Q 011527 386 LKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMV 465 (484)
Q Consensus 386 l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v 465 (484)
+.+.+..+++..+++|+|++.+++...++++++++||++|++|++++...++++++++|++.|++++|++|++|.++++|
T Consensus 310 l~~~~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v 389 (397)
T TIGR00442 310 LEELGLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLGARFAVILGEDELANGTV 389 (397)
T ss_pred HHhcCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeE
Confidence 98887666656778999999988888899999999999999999988888899999999999999999999999999999
Q ss_pred EEEECCCC
Q 011527 466 GVKILSSG 473 (484)
Q Consensus 466 ~vk~~~~~ 473 (484)
+|||+.+|
T Consensus 390 ~vrnl~~~ 397 (397)
T TIGR00442 390 TLKDLETG 397 (397)
T ss_pred EEEeCCCC
Confidence 99999875
No 8
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=9.2e-71 Score=569.46 Aligned_cols=363 Identities=28% Similarity=0.416 Sum_probs=317.7
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChH
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTP 151 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~ 151 (484)
.++|+|++|++|+++..++++++.++++|++|||++|.||+||+.+++..+.|+...++||+|+|+ +|+.++||||+|+
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTA 82 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcH
Confidence 578999999999999999999999999999999999999999999999887777778899999999 9999999999999
Q ss_pred HHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEe
Q 011527 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRI 231 (484)
Q Consensus 152 ~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i 231 (484)
|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++++.+|++ ++.|+|
T Consensus 83 ~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~--~~~i~i 160 (391)
T PRK12292 83 QIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP--NFTLDL 160 (391)
T ss_pred HHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC--CeEEEe
Confidence 999999987655567999999999999999999999999999999999999999999999999999999997 799999
Q ss_pred CCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC----hhhh--------h
Q 011527 232 SSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS----LTEL--------E 299 (484)
Q Consensus 232 ~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~----~~~l--------~ 299 (484)
||+++++++++.++++++++..++.++++.++ ..+++.+. +++.+..+.+..++...+ ++.+ .
T Consensus 161 ~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~--~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~ 235 (391)
T PRK12292 161 GHVGLFRALLEAAGLSEELEEVLRRALANKDY---VALEELVL--DLSEELRDALLALPRLRGGREVLEEARKLLPSLPI 235 (391)
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCH---HHHHHHHh--cCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChHH
Confidence 99999999999999999998888888876654 34444333 566666666666654321 1111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchH
Q 011527 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGD 379 (484)
Q Consensus 300 ~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigi 379 (484)
.+++++|+++++.++.+|+...+.|||+++|+++||||+|||+|.+ +...+||+|||||+|++.|| ++.||||||+++
T Consensus 236 ~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~-~~~~~i~~GGRYD~L~~~fg-~~~pAvGfai~l 313 (391)
T PRK12292 236 KRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVD-GVGNPIASGGRYDDLLGRFG-RARPATGFSLDL 313 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEEC-CCCCcccCCcchhhHHHHcC-CCCCCceEEeeH
Confidence 4689999999999999998878999999999999999999999985 45567999999999999995 679999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCC
Q 011527 380 AVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINA 449 (484)
Q Consensus 380 erl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi 449 (484)
|||+.+ . . ++...+.+++|++.+++...++++++++||+.|++|++.+...++++++++|++.|+
T Consensus 314 drl~~~-~-~---~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 314 DRLLEL-Q-L---ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred HHHHhh-c-c---ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 999984 1 1 122234678888888777888999999999999999998888789999999999997
No 9
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-69 Score=562.54 Aligned_cols=382 Identities=36% Similarity=0.578 Sum_probs=321.2
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcccc---ccceEEEEeCCCCeEeeC
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRGNRRVALR 146 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~---~~~~~~~~D~~G~~l~LR 146 (484)
|+++++|+|++||+|.++..++++++.++++|++|||++|.||+||+.++|..+.|++. .++||+|.|++|+.++||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LR 80 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLR 80 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEec
Confidence 56789999999999999999999999999999999999999999999999987667664 689999999999999999
Q ss_pred CCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCc
Q 011527 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD 226 (484)
Q Consensus 147 pD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~ 226 (484)
||+|+|+||+++++.. +|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++|+.||++ +
T Consensus 81 pd~T~~~ar~~~~~~~---~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~--~ 155 (412)
T PRK00037 81 PEGTAPVVRAVIEHKL---QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK--G 155 (412)
T ss_pred CCCcHHHHHHHHhCCC---CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC--c
Confidence 9999999999998754 7999999999999999999999999999999999998889999999999999999997 5
Q ss_pred eEEE----------eCCHHHHHHHHHhCCCCchhh-------hhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 011527 227 VGFR----------ISSRKVLQEVLRCHSIPEHLF-------GKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (484)
Q Consensus 227 ~~i~----------i~~~~il~~~l~~~g~~~~~~-------~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l 289 (484)
+.+. +||+++++.+|+. ++++-.. ..++.+++++++.. ...+. .++.+.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~-- 221 (412)
T PRK00037 156 LKLLINSLGDFEIRANYRKALVGFLEK-GLDELDEDSKRRLETNPLRILDKKDKED----QELLK-------DAPKLL-- 221 (412)
T ss_pred eeeeeccCCCHHHhHHHHHHHHHHHHh-CchhhchHHHHHHhhCchhhhcccchhh----HHHHh-------cchHHH--
Confidence 6664 5556677777776 4443110 00111111111000 00000 001111
Q ss_pred ccCCChhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCC
Q 011527 290 LSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGD 368 (484)
Q Consensus 290 ~~~~~~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~ 368 (484)
+.+...++++|+++.++++.+|+. +.|||+++|+++||||++||+|.++ |...+||+|||||+|++.|++.
T Consensus 222 ------~~~~~~~~~~l~~l~~~l~~~~~~--i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~ 293 (412)
T PRK00037 222 ------DYLDEESKEHFEELKELLDALGIP--YVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGP 293 (412)
T ss_pred ------HHhhHHHHHHHHHHHHHHHHcCCC--EEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCC
Confidence 112246788889999999999874 9999999999999999999999853 4446899999999999999977
Q ss_pred CCceecccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcC
Q 011527 369 DIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARIN 448 (484)
Q Consensus 369 ~~pavGfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~g 448 (484)
+.|||||++++|||+.++.+.+. ++++|+|++++++...++.++++.||++|++|++++.+.++++++++|++.|
T Consensus 294 ~~pavGfs~~le~l~~~l~~~~~-----~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~~~~a~~~g 368 (412)
T PRK00037 294 PTPAVGFAIGVERLLLLLEELGE-----EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSG 368 (412)
T ss_pred CCceEEEEEcHHHHHHHHHhcCC-----CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHcC
Confidence 89999999999999999987653 5689999999877778899999999999999999877778999999999999
Q ss_pred CCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 449 AQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 449 i~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+++++++|++|.++|+|+||++.++++..|+++|+
T Consensus 369 i~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el 403 (412)
T PRK00037 369 ARFVLILGEDELANGTVTVKDLRTGEQQTVPLDEL 403 (412)
T ss_pred CCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHH
Confidence 99999999999999999999999999999998876
No 10
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.2e-66 Score=535.19 Aligned_cols=362 Identities=18% Similarity=0.264 Sum_probs=308.1
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChH
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTP 151 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~ 151 (484)
.++|+||+|++|+++..+++|++.++++|++|||++|.||+||+.++|..+.|++..++||+|.|+ +|+.++||||+|+
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCH
Confidence 478999999999999999999999999999999999999999999999887888777899999999 6999999999999
Q ss_pred HHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEe
Q 011527 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRI 231 (484)
Q Consensus 152 ~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i 231 (484)
|+||+++++.. .+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|++||++ ++.|+|
T Consensus 87 ~iaR~~a~~~~-~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~--~~~l~i 163 (392)
T PRK12421 87 QVARIDAHLLN-REGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP--ALHLDL 163 (392)
T ss_pred HHHHHHHhhcC-CCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC--CeEEEe
Confidence 99999887643 257999999999999999999999999999999999999999999999999999999997 799999
Q ss_pred CCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC-Chhh-------------
Q 011527 232 SSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLTE------------- 297 (484)
Q Consensus 232 ~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~-~~~~------------- 297 (484)
||+++++++++.++++++.+..++.++++. +...+.+.+..++++.+..+.|..++... ..+.
T Consensus 164 g~~~i~~~il~~l~l~~~~~~~l~~~l~kk---~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~~~~ 240 (392)
T PRK12421 164 GHVGIFRRLAELAGLSPEEEEELFDLLQRK---ALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLALQDA 240 (392)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhcccCCH
Confidence 999999999999999998888877666654 55666666777788877666666665432 1111
Q ss_pred hhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccc
Q 011527 298 LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGF 377 (484)
Q Consensus 298 l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsi 377 (484)
...+++++|+++++.++.++....+.+|++++||++||||+|||+|.+ +...+||+|||||+|+++||. +.||||||+
T Consensus 241 ~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~-~~~~~i~~GGRYD~L~~~fg~-~~pAvGfai 318 (392)
T PRK12421 241 AIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIP-GRGQALARGGRYDGIGEAFGR-ARPATGFSM 318 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEEC-CCCCcccCCCCccchhHhhCC-CCCCceEEe
Confidence 114678899999999998855556999999999999999999999985 566789999999999999974 689999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcC
Q 011527 378 GDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 378 gierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
++|||+.++...+ . .++++++.+++ ..+++++++||+.|++|++++.+.. .++ +.++...+++++
T Consensus 319 ~lerL~~~l~~~~------~-~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~~~~-----~~~-~~~~~~~~~~~~ 383 (392)
T PRK12421 319 DLKELLALQFLEE------E-AGAILAPWGDD--PDLLAAIAELRQQGERVVQLLPGDD-----GSS-EPGCDHRLVLQD 383 (392)
T ss_pred eHHHHHhhccccc------C-CceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCCCcc-----hhH-HhCCCeEEEEEC
Confidence 9999998774321 1 26778877654 3578899999999999998865532 234 558888888874
No 11
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=4.7e-60 Score=476.33 Aligned_cols=300 Identities=29% Similarity=0.508 Sum_probs=267.7
Q ss_pred ccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHH
Q 011527 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (484)
Q Consensus 80 ~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~ 159 (484)
+|++|.++.+++++++.++++|++|||++|.||+||+.+++..+.| ...++||+|+|++|+.++||||+|+|+||++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~ 79 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVST 79 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-cchhceEEEECCCCCEEeecCcCcHHHHHHHHH
Confidence 6999999999999999999999999999999999999999988666 678899999999999999999999999999998
Q ss_pred cCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHH
Q 011527 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (484)
Q Consensus 160 ~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~ 239 (484)
+....+.|.|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++++.+|++ ++.|+|||+++++.
T Consensus 80 ~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~--~~~i~l~~~~il~~ 157 (314)
T TIGR00443 80 RLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLK--DFKIELGHVGLVRA 157 (314)
T ss_pred hcccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCC--CeEEEeCcHHHHHH
Confidence 7655568999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC-C----hhhhh--------HHHHHHH
Q 011527 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-S----LTELE--------GEAVADL 306 (484)
Q Consensus 240 ~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~-~----~~~l~--------~~~~~~L 306 (484)
+++.++++++++..++.++++.+. ..+.+.+.+.+++++.++.+..++... + ++.+. .+++++|
T Consensus 158 il~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~l~~l 234 (314)
T TIGR00443 158 LLEEAGLPEEAREALREALARKDL---VALEELLAELGLDPEVRERLLALPRLRGDGEEVLEEARALAGSETAEAALDEL 234 (314)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCH---HHHHHHHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999998888877654 345555667788887777777766432 1 11111 4789999
Q ss_pred HHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHHHHHHH
Q 011527 307 KLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELL 386 (484)
Q Consensus 307 ~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l 386 (484)
+++.++++.+|+...|.||++++|+++||||+|||+|.. +...+||+|||||+|+++|| ++.||||||+++|||++++
T Consensus 235 ~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~-~~~~~i~~GGRYD~L~~~fg-~~~~AvGfa~~~d~l~~~l 312 (314)
T TIGR00443 235 EAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAP-GLGAPIAGGGRYDNLLGRFG-RPLPATGFALNLERLLEAL 312 (314)
T ss_pred HHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEEC-CCCCcccCCccHHHHHHHcC-CCCCCceEEecHHHHHHHh
Confidence 999999999999878999999999999999999999984 56679999999999999996 6799999999999999876
Q ss_pred H
Q 011527 387 K 387 (484)
Q Consensus 387 ~ 387 (484)
.
T Consensus 313 ~ 313 (314)
T TIGR00443 313 T 313 (314)
T ss_pred c
Confidence 3
No 12
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=3.3e-59 Score=470.50 Aligned_cols=296 Identities=39% Similarity=0.653 Sum_probs=252.0
Q ss_pred ccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHH
Q 011527 78 GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLV 157 (484)
Q Consensus 78 G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~ 157 (484)
||+||+|++++.++++++.++++|++|||++|.||+||+.+++....|.. .+++|+|+|++|+.++||||+|+|+||++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~-~~~~~~~~D~~G~~l~LR~D~T~~iaR~~ 79 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED-SDNMYRFLDRSGRVLALRPDLTVPIARYV 79 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT-GGCSEEEECTTSSEEEE-SSSHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc-hhhhEEEEecCCcEeccCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999998766665 45899999999999999999999999999
Q ss_pred HHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHH-HcCCCCCceEEEeCCHHH
Q 011527 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK-RIGITASDVGFRISSRKV 236 (484)
Q Consensus 158 ~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~-~lgl~~~~~~i~i~~~~i 236 (484)
+++.. .+.|.|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++++ .+|+. ++.|+|||+++
T Consensus 80 a~~~~-~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~--~~~i~i~h~~i 156 (311)
T PF13393_consen 80 ARNLN-LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLE--NFTIRINHTGI 156 (311)
T ss_dssp HHCCG-SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT--SEEEEEEEHHH
T ss_pred HHhcC-cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCC--CcEEEEcCchh
Confidence 99854 5679999999999999999999999999999999999999999999999999997 99986 89999999999
Q ss_pred HHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC-Chhhh------------hHHHH
Q 011527 237 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLTEL------------EGEAV 303 (484)
Q Consensus 237 l~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~-~~~~l------------~~~~~ 303 (484)
++.+++.+|++++++..++.++++. +..++++.+.+.+++.+..+.|..++... ..+.+ ..+++
T Consensus 157 ~~~il~~~gl~~~~~~~l~~~l~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~ 233 (311)
T PF13393_consen 157 LDAILEHLGLPEDLRRELLEALDKK---DLSELKELLSELGLSSESLEILDKLPELEGDPEALEELLESLPSSPALQEAL 233 (311)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHT---HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHSHHHHHHHHHHHTCSCHHHHHH
T ss_pred hHHHHhhcCCChhhhhhhhhheecc---ccccchhhhcccccchhhhhhhhccccccchHHHHHHHHHHHhhhhhhHHHH
Confidence 9999999999999988888877664 45667777888888877776665554221 11111 15789
Q ss_pred HHHHHHHHHHHhcC-CcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHHH
Q 011527 304 ADLKLLFSLAEKFG-YSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVI 382 (484)
Q Consensus 304 ~~L~~l~~~l~~~g-~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl 382 (484)
++|+++.++++.+| ....|.|||+++|+++||||+|||++.+ +...+||+|||||+|+++|| ++.|||||||++|||
T Consensus 234 ~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~-~~~~~ia~GGRYD~L~~~fg-~~~~AvGfai~ld~L 311 (311)
T PF13393_consen 234 EELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAP-GRGSPIAGGGRYDNLLEQFG-KPIPAVGFAIGLDRL 311 (311)
T ss_dssp HHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEET-TSSSESEEEEEETTHHHHTT-SS-EEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEc-CCCceEecccChhHHHHHhC-CCCceEEEEEEeccC
Confidence 99999999999998 5677999999999999999999999985 45569999999999999995 689999999999986
No 13
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.2e-56 Score=458.50 Aligned_cols=290 Identities=24% Similarity=0.372 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 011527 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (484)
Q Consensus 89 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPl 168 (484)
..+++++.++++|++|||.+|.||+||+++++..++|++..++||+|.|++|+.++||||+|+|+||.++++. .+.|.
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~--~~~p~ 83 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATA--GGEPA 83 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcC--CCCCe
Confidence 4568999999999999999999999999999988788888889999999999999999999999999988862 35799
Q ss_pred eEEEecCeeeeCcCCCCCccceEEeEEEEEcC-CChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCC
Q 011527 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIP 247 (484)
Q Consensus 169 k~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~-~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~ 247 (484)
|+||+|+|||++ .||+|||+|+|+|+||. ++..+|+|+|.++.++|+.+|+. ++.|+|||+++++++++.++++
T Consensus 84 R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~--~~~i~ig~~~il~~ll~~l~l~ 158 (373)
T PRK12295 84 RYAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG--DLEVRLGDVGLFAALVDALGLP 158 (373)
T ss_pred EEEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHHHHHcCCC
Confidence 999999999988 68999999999999997 45789999999999999999997 7999999999999999999999
Q ss_pred chhhhhHhHHHHhhccC--------------------------------------------------CHHHHHHHHHhc-
Q 011527 248 EHLFGKVCIIIDKIEKL--------------------------------------------------PLDVIKNDLKSA- 276 (484)
Q Consensus 248 ~~~~~~v~~~l~~~~~~--------------------------------------------------~~~~l~~~L~~~- 276 (484)
++++..++.++++.++. +..++.+.|...
T Consensus 159 ~~~~~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~r~~~ei~~~l~~~~ 238 (373)
T PRK12295 159 PGWKRRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALADEAAARALVEDLMSIAGISPVGGRSPAEIARRLLEKA 238 (373)
T ss_pred HHHHHHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhccchhhhhhhhhhhhhccccccccccHHHHHHHHHhhh
Confidence 98888888887765541 111222222111
Q ss_pred ------CCCHHHHHHHHHHccCCC-hh----h----------hhHHHHHHHHHHHHHHHhcCCc-ceEEEecCCccCCCc
Q 011527 277 ------GMSEAAIEELLRVLSIKS-LT----E----------LEGEAVADLKLLFSLAEKFGYS-DWIQFDASVVRGLAY 334 (484)
Q Consensus 277 ------g~~~~~~~~l~~l~~~~~-~~----~----------l~~~~~~~L~~l~~~l~~~g~~-~~i~~Dl~l~r~~~Y 334 (484)
+++.+..+.+.+++...+ .+ . ...+++++|.++++.++.+|+. +++.||++++|+++|
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~l~~l~~~~~~~~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~Y 318 (373)
T PRK12295 239 ALAAAARLPAEALAVLERFLAISGPPDAALAALRALAADAGLDLDAALDRFEARLAALAARGIDLERLRFSASFGRPLDY 318 (373)
T ss_pred cccccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCcc
Confidence 667776776666665431 11 1 1246889999999999999986 679999999999999
Q ss_pred eeceeEEEEecCCCcceeecCccccHhHhhcCC-CCCceecccchHHHHHHH
Q 011527 335 YTGIVFECFDRDGKLRAICGGGRYDQLLSTFGG-DDIPACGFGFGDAVILEL 385 (484)
Q Consensus 335 YtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~-~~~pavGfsigierl~~~ 385 (484)
|||+|||+|.++....+||+|||||+|++.||+ ++.||||||+++|||+++
T Consensus 319 YTGiVFe~~~~~~~~~~I~~GGRYD~Li~~fg~~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 319 YTGFVFEIRAAGNGDPPLAGGGRYDGLLTRLGAGEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred ccceEEEEEECCCCCCcccCCcCHHHHHHHhCCCCCCCeeEEEEcHHHHHhh
Confidence 999999999853215789999999999999985 789999999999998764
No 14
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=3.1e-55 Score=432.36 Aligned_cols=278 Identities=22% Similarity=0.369 Sum_probs=223.0
Q ss_pred ccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCCh
Q 011527 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (484)
Q Consensus 71 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T 150 (484)
.++++|+|++|++|+++..++++++.++++|++|||++|.||+||+.+++.. ...++||+|.|++|+.++||||+|
T Consensus 3 ~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~----~~~~~~y~~~D~~g~~l~LRpD~T 78 (281)
T PRK12293 3 LEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI----ADEKELIRFSDEKNHQISLRADST 78 (281)
T ss_pred CCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc----cchhceEEEECCCCCEEEECCcCC
Confidence 3478999999999999999999999999999999999999999999998733 346899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 011527 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (484)
Q Consensus 151 ~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~ 230 (484)
+|+||+++++....+.|+|+||+|+|||+++ |||+|+|+|+||.++. +|+|.++.++|+++|++ +.|+
T Consensus 79 ~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~---~Evi~la~~~l~~lgl~---~~i~ 146 (281)
T PRK12293 79 LDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDL---SEILNIAAEIFEELELE---PILQ 146 (281)
T ss_pred HHHHHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCH---HHHHHHHHHHHHHcCCC---CEEE
Confidence 9999999987654577999999999999873 8999999999999875 59999999999999985 4799
Q ss_pred eCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHHHHHHHH
Q 011527 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLF 310 (484)
Q Consensus 231 i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~~L~~l~ 310 (484)
|||+++++++++.++++++..... .++++.+.+.+.+.+.+.-.+ .+.++++.+.. ..++.++|+++.
T Consensus 147 ig~~~i~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~--------~~~~~~~l~~l~ 214 (281)
T PRK12293 147 ISNIKIPKLVAEILGLDIEVFKKG--QIEKLLAQNVPWLNKLVRIKT--LEDLDEVIELV--------PDEIKEELEKLK 214 (281)
T ss_pred ECCHHHHHHHHHHcCCCHHHHhHH--HHHHHHHHhHHHHHHHHhcCC--HHHHHHHHhhC--------CHHHHHHHHHHH
Confidence 999999999999999987654221 112221122233333332211 11222222211 134566677777
Q ss_pred HHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHHHHHHHH
Q 011527 311 SLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLK 387 (484)
Q Consensus 311 ~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l~ 387 (484)
+.++.++.. .+.|||+++||++||||+|||+|.+ | .+||+|||||+ .+.||||||+++|||+.+|.
T Consensus 215 ~~l~~l~~~-~~~~Dl~~vrgl~YYTGivFe~~~~-~--~~i~~GGRYD~-------~~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 215 ELAESIKYE-NLVIAPLYYAKMRYYDDLFFRFFDG-N--STLASGGNYEI-------DGISSSGFALYTDNLIEILL 280 (281)
T ss_pred HHHHHcCCC-cEEEccccccCCCCccceEEEEEEC-C--ceeccccCCCC-------CCCCcceEEeeHHHHHHHhh
Confidence 777777764 3999999999999999999999985 3 38999999992 46899999999999998864
No 15
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=9.5e-55 Score=427.21 Aligned_cols=259 Identities=41% Similarity=0.723 Sum_probs=230.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
+++++++|++.++++|++|||++|.||+||+.+++..+.++...+++|+|+|++|+.++||||+|+|+||+++++....+
T Consensus 1 ~~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~ 80 (261)
T cd00773 1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLP 80 (261)
T ss_pred ChHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCC
Confidence 36789999999999999999999999999999999775566678899999999999999999999999999998766456
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHS 245 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g 245 (484)
+|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++++.+|+. ++.|+|||+++++++++.++
T Consensus 81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~--~~~i~l~~~~i~~~l~~~~~ 158 (261)
T cd00773 81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK--DFQIKINHRGILDGIAGLLE 158 (261)
T ss_pred CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC--ceEEEECCHHHHHHHhhccC
Confidence 8999999999999999999999999999999999999999999999999999999986 79999999999999999888
Q ss_pred CCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHHHHHHHHHHHHhcCCcceEEEe
Q 011527 246 IPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFD 325 (484)
Q Consensus 246 ~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~D 325 (484)
+++++...+ +++++ ++++++|+++.++++.+|+...|.+|
T Consensus 159 ~~~~~~~~l---~~~l~-------------------------------------~~~l~~l~~l~~~l~~~~~~~~i~~d 198 (261)
T cd00773 159 DREEYIERL---IDKLD-------------------------------------KEALAHLEKLLDYLEALGVDIKYSID 198 (261)
T ss_pred CCHHHHHHH---HHHhh-------------------------------------HHHHHHHHHHHHHHHHcCCCceEEEc
Confidence 775432221 11111 15678899999999999987789999
Q ss_pred cCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCceecccchHHHHHHHH
Q 011527 326 ASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELL 386 (484)
Q Consensus 326 l~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l 386 (484)
++++|+++||||+|||+|.+. +...+||+|||||+|++.|++++.|||||||++|||+.++
T Consensus 199 ~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfa~~~d~l~~~~ 260 (261)
T cd00773 199 LSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPAVGFAIGLERLLLAL 260 (261)
T ss_pred CccccCCcccCceEEEEEECCCCccCeEeeccCHHHHHHHhCCCCCCeEEEEEcHHHHHHhh
Confidence 999999999999999999863 2367999999999999998777899999999999999875
No 16
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=2.7e-51 Score=444.00 Aligned_cols=344 Identities=21% Similarity=0.242 Sum_probs=290.2
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHHH
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~i 153 (484)
++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+ +|++ +.++||+|.|++|+.++|||+.|+++
T Consensus 189 ~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i 267 (563)
T TIGR00418 189 GPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDNREFMLKPMNCPGH 267 (563)
T ss_pred CCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCCceEEEecCCCHHH
Confidence 89999999999999999999999999999999999999999999988 4754 68999999999999999999999999
Q ss_pred HHHHHHcCC-CCCCCeeEEEecCeeeeCcCC----CCCccceEEeEEEEEcCCChhhHHH---HHHHHHHHHHHcCCCCC
Q 011527 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMT----RGRRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGITAS 225 (484)
Q Consensus 154 aR~~~~~~~-~~~lPlk~yyig~vfR~e~~~----~gr~rEf~Q~g~eiig~~~~~adaE---vi~l~~~~l~~lgl~~~ 225 (484)
+|+++++.. +.++|+|+||+|+|||+|..+ .+|.|||+|.|+|+||. ...+++| ++.++.++++.||++
T Consensus 268 ~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~~~~~~~lgl~-- 344 (563)
T TIGR00418 268 FLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLIQKVYSDFGFS-- 344 (563)
T ss_pred HHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHHHHHHHHcCCC--
Confidence 999998765 347899999999999999543 14999999999999998 4566666 999999999999997
Q ss_pred ceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHHH
Q 011527 226 DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVAD 305 (484)
Q Consensus 226 ~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~~ 305 (484)
.+.+.+|....- +.++. +.. ....
T Consensus 345 ~~~~~l~~~~~~----~~~~~--------------------~~~--------------------------------~~~~ 368 (563)
T TIGR00418 345 FDKYELSTRDPE----DFIGE--------------------DEL--------------------------------WEKA 368 (563)
T ss_pred eEEEEEeCCChh----hhcCC--------------------HHH--------------------------------HHHH
Confidence 577888752110 00100 000 0011
Q ss_pred HHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCc-------ceeecCccccHh-HhhcCCCCCcee---c
Q 011527 306 LKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL-------RAICGGGRYDQL-LSTFGGDDIPAC---G 374 (484)
Q Consensus 306 L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~-------~~i~~GGRYD~L-~~~f~~~~~pav---G 374 (484)
...+.+.|+.+|++ +.+|+. ||++||+.++|++.+..|.. ..+++|||||.+ ++..|++..|++ |
T Consensus 369 ~~~~~~~l~~~~i~--~~~~~~--~g~~y~~~~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~G 444 (563)
T TIGR00418 369 EAALEEALKELGVP--YEIDPG--RGAFYGPKIDFAFKDALGREWQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRA 444 (563)
T ss_pred HHHHHHHHHhCCCc--eEEcCC--CcceecceEEEEeecCCCCceeeceeeeccCCHhhcCCEEECCCCCEEeeEEEEee
Confidence 22344556667876 778887 99999999999975433432 247889999995 788888888985 9
Q ss_pred ccchHHHHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEE
Q 011527 375 FGFGDAVILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRL 452 (484)
Q Consensus 375 fsigierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~ 452 (484)
|++|+||++.+|.+. +.+|.+.+|.+|+|++++++...+|.++++.||++|++|++++.++++++++++|++.|+|++
T Consensus 445 fa~gieRli~~l~e~~~~~~p~~~~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~ 524 (563)
T TIGR00418 445 ILGSIERFIAILLEKYAGNFPLWLAPVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYM 524 (563)
T ss_pred ccCcHHHHHHHHHHhccCCCCCcCCCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEE
Confidence 999999999998664 456766788999999999888899999999999999999999888899999999999999999
Q ss_pred EEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 453 ILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 453 iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|++|++|+++|+|+||++.+|+|.+++++++
T Consensus 525 iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el 555 (563)
T TIGR00418 525 LVVGDKEMESLAVNVRTRKGQKLEKMSLDEF 555 (563)
T ss_pred EEEchhhhhCCeEEEEECCCCccceeeHHHH
Confidence 9999999999999999999999999998875
No 17
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=407.21 Aligned_cols=368 Identities=25% Similarity=0.370 Sum_probs=291.5
Q ss_pred cccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChH
Q 011527 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 72 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
..++|.|++|.+|.+++...+|++++.+.|++|||+.|+||+|||++.+....|+....++|++.|..|+.++||||+|+
T Consensus 2 ~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~ 81 (390)
T COG3705 2 TWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTI 81 (390)
T ss_pred CCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccH
Confidence 46899999999999999999999999999999999999999999999998877887889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEe
Q 011527 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRI 231 (484)
Q Consensus 152 ~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i 231 (484)
|+||.+++.... .|.|+||.|+|||..+...|+..||+|+|+|++|.++..+|+|||.++..+++.+|+. +++|.|
T Consensus 82 pVaR~~~~~~~~--~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~--~~~l~L 157 (390)
T COG3705 82 PVARIHATLLAG--TPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLA--DLKLEL 157 (390)
T ss_pred HHHHHHHHhcCC--CCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCc--CeEEEe
Confidence 999999998764 7999999999999885556788899999999999999999999999999999999987 899999
Q ss_pred CCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC-Chhhh-----------h
Q 011527 232 SSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLTEL-----------E 299 (484)
Q Consensus 232 ~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~-~~~~l-----------~ 299 (484)
||.+++++++..++++..++..+...+.+. +...++......+.+++....+..++... ..+.+ .
T Consensus 158 G~~gif~all~~~~l~~~~~~~L~~a~~~k---~~~~~~~~~~~~~~~~~~~~~l~~l~~l~gg~e~l~~~~~~l~~~~~ 234 (390)
T COG3705 158 GHAGIFRALLAAAGLPGGWRARLRRAFGDK---DLLGLELLVLAAPLSPELRGRLSELLALLGGREVLERARGLLDELMA 234 (390)
T ss_pred ccHHHHHHHHHHcCCChhHHHHHHHHHhcc---chhhHHHHhhccCCChhhhHHHHHHHHHhCCHHHHHHHHHhhhhhhh
Confidence 999999999999999999988887766554 33344443344455544333333332211 11111 1
Q ss_pred -HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccch
Q 011527 300 -GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFG 378 (484)
Q Consensus 300 -~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsig 378 (484)
..++++++.+.+++..++ .++.+|++.+++.+||||++|++|. ++...++++|||||++.+.|+. ..|++||++.
T Consensus 235 ~~~al~~~~~l~di~~~~~--e~i~lDLg~l~~~~YyTg~~F~ay~-~~~~~al~~GGRYd~l~~~f~~-~~patGf~~~ 310 (390)
T COG3705 235 QGIALNEGRALADIARRLI--EKIALDLGRLRHFDYYTGLVFLAYA-DGLGDALASGGRYDGLLGLFGR-AAPATGFALR 310 (390)
T ss_pred hhhhhhhhhhHHHHHhccc--hhheehhhcccccchhhceeeeeee-ccccchhhcccchhhhhhhcCc-cccchhhHhh
Confidence 345777777888877744 4499999999999999999999996 3566799999999999999996 4699999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 379 DAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 379 ierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
++.|.+ +..|....+.++.+....+.....+.+++.+++.+|-.+...+... .-+.+...++.+.+.+...
T Consensus 311 l~~l~~-----~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~~g----~~~~~~~~~~~~~~~~~~~ 381 (390)
T COG3705 311 LDALAQ-----GGLPLEERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLLTG----LGASEEIPGVGFSLWLDRG 381 (390)
T ss_pred HHHHHh-----cCCCcccchhhhccCccchhhHHHHHHHHHHhcccCCeEEEecccc----cchHhhhcccceeEeeccc
Confidence 999886 3333333344554444333345789999999997665443332211 1234556778888877654
Q ss_pred c
Q 011527 459 E 459 (484)
Q Consensus 459 e 459 (484)
.
T Consensus 382 ~ 382 (390)
T COG3705 382 V 382 (390)
T ss_pred c
Confidence 3
No 18
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-49 Score=437.68 Aligned_cols=353 Identities=22% Similarity=0.283 Sum_probs=282.1
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcc--ccccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~--~~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
+.|+|++||+|.++.++++|++.+++++.+|||++|.||+||+.++|.. +|+ .+.++||+|.|++|+.++|||+.|+
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~~~~~LRP~~~~ 335 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDGEEYALKPMNCP 335 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCCcEEEEecCCcH
Confidence 5679999999999999999999999999999999999999999999987 475 3688999999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCCeeEEEecCeeeeCcCCC--C--CccceEEeEEEEEcCCChh-hH-HHHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR--G--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~~-~~lPlk~yyig~vfR~e~~~~--g--r~rEf~Q~g~eiig~~~~~-ad-aEvi~l~~~~l~~lgl~~ 224 (484)
+++|+++++... .++|+|+||+|+|||+|+++. | |.|||+|+|+|+||.++.. +| +|++.++.++++.||++
T Consensus 336 ~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~- 414 (638)
T PRK00413 336 GHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE- 414 (638)
T ss_pred HHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc-
Confidence 999999987663 578999999999999999863 4 9999999999999987755 46 89999999999999997
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHH
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~ 304 (484)
++.+++||+ +. ..+|.++.+ ++. .+.+++.|...|++.+..+....+..++ ++....+++.
T Consensus 415 -~~~i~l~~r-~~----~~~g~~~~~--------~~~----~~~l~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 475 (638)
T PRK00413 415 -DYEVKLSTR-PE----KRIGSDEMW--------DKA----EAALKEALDELGLDYEIAPGEGAFYGPK-IDFQLKDALG 475 (638)
T ss_pred -eEEEEEecC-Cc----ccCCCHHHH--------HHH----HHHHHHHHHHcCCCceecCCccccccce-EEEEeecCCC
Confidence 799999997 22 244544321 111 2345555665555433221111111111 1110011111
Q ss_pred HHHHHHHHHHhcCCcceEEEecCCccCCC-ceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCcee---cccchHH
Q 011527 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLA-YYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPAC---GFGFGDA 380 (484)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~-YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pav---Gfsigie 380 (484)
++.+ + .++++|+++.++++ ||||.+++ ...|++ |++.++|
T Consensus 476 ~~~~---------l-~~~~~d~~~~~~~dl~Yt~~~~~--------------------------~~~p~~i~~~~~g~~e 519 (638)
T PRK00413 476 REWQ---------C-GTIQLDFNLPERFDLTYVGEDGE--------------------------KHRPVMIHRAILGSME 519 (638)
T ss_pred CeEE---------e-ccEeecccChhhcCCEEECCCCC--------------------------ccCcEEEEecceehHH
Confidence 1111 0 34788999988888 78875321 124656 6666899
Q ss_pred HHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 381 VILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 381 rl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
|++.+|.+. |.+|.|.+|.+|+|++++++...+|.++++.||++|++|++++.+.++++++++|++.|+|++|+||++
T Consensus 520 Rli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~~iiiG~~ 599 (638)
T PRK00413 520 RFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDK 599 (638)
T ss_pred HHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCCEEEEEcch
Confidence 999999774 778887889999999999888899999999999999999999998999999999999999999999999
Q ss_pred ccccCeEEEEECCCCceeeeccCcC
Q 011527 459 EWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 459 e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|+++|+|+||++.+++|.+++++++
T Consensus 600 E~~~~~v~vr~~~~~~q~~i~~~~l 624 (638)
T PRK00413 600 EVEAGTVSVRRRGGKDLGTMSLDEF 624 (638)
T ss_pred hhhcCeEEEEECCCCccceeeHHHH
Confidence 9999999999999999999998876
No 19
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-48 Score=419.65 Aligned_cols=345 Identities=20% Similarity=0.271 Sum_probs=283.3
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
..++|++||+|.++++++.|++.++++++++||++|.||+|++.++|.. +|++ +.++||+|.|++|+.++|||+.|+
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~~~~~LRP~~~~ 271 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDEEEYYLKPMNCP 271 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCCceEEEecCCCH
Confidence 4589999999999999999999999999999999999999999999988 5773 678999999999999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC----CCCccceEEeEEEEEcCCChhhH--HHHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT----RGRRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~----~gr~rEf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~ 224 (484)
+++|+++++.. +.++|+|+||+|+|||+|+++ .+|.|||+|+|+|+||.++..+| +|++.++.++++.||++
T Consensus 272 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~- 350 (575)
T PRK12305 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK- 350 (575)
T ss_pred HHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 99999998764 357899999999999999875 35999999999999998877776 89999999999999997
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHH
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~ 304 (484)
++.+.+|++.+ +. .+|..+.| + .+.+
T Consensus 351 -~~~i~l~~r~~-~~---~~g~~~~~----------------~---------------------------------~~~~ 376 (575)
T PRK12305 351 -DYYLELSTREP-EK---YVGDDEVW----------------E---------------------------------KATE 376 (575)
T ss_pred -eEEEEEeCCCh-hh---ccCCHHHH----------------H---------------------------------HHHH
Confidence 69999999755 11 12211100 0 0011
Q ss_pred HHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC--CCc---cee----ecCccccH-hHhhcCCCCCcee-
Q 011527 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD--GKL---RAI----CGGGRYDQ-LLSTFGGDDIPAC- 373 (484)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~--g~~---~~i----~~GGRYD~-L~~~f~~~~~pav- 373 (484)
. +.+.++..|++ ..+|.. +.+||. ..|++...+ |.. ..+ ..++|||- +.+..|++..|++
T Consensus 377 ~---l~~~l~~~g~~--~~~~~~---~~~~y~-~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~i 447 (575)
T PRK12305 377 A---LREALEELGLE--YVEDPG---GAAFYG-PKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMI 447 (575)
T ss_pred H---HHHHHHhcCCC--cEecCC---Cccccc-ccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEE
Confidence 1 12223344554 344544 677885 557764322 332 223 35689995 5666666667877
Q ss_pred --cccchHHHHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCC
Q 011527 374 --GFGFGDAVILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINA 449 (484)
Q Consensus 374 --Gfsigierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi 449 (484)
|+..++||++.+|.+. +.+|.+.+|.+|+|++++++...+|.++++.||++|++|++++++.++++++++|++.|+
T Consensus 448 h~~~~G~~eRl~~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~ 527 (575)
T PRK12305 448 HRALFGSIERFIGILTEHYAGAFPFWLAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKI 527 (575)
T ss_pred EccccccHHHHHHHHHHHhCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCC
Confidence 6666899999999874 678888889999999999888899999999999999999999988899999999999999
Q ss_pred CEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 450 QRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 450 ~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|++||||++|+++|+|+||++.+++|.+|+++++
T Consensus 528 p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l 561 (575)
T PRK12305 528 PYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEF 561 (575)
T ss_pred CEEEEEechhhhCCEEEEEEcCCCceeeeeHHHH
Confidence 9999999999999999999999999999998875
No 20
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-47 Score=418.72 Aligned_cols=341 Identities=22% Similarity=0.305 Sum_probs=288.1
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
+..+|+++|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.. +|++ +.++|| +.|++|+.++|||+.|+
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~~~~~LrP~~~~ 338 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDNKSFALKPMNCP 338 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCCcEEEEccCCCH
Confidence 4588999999999999999999999999999999999999999999988 5774 789999 88999999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCC--C--CccceEEeEEEEEcCCChhhHHH---HHHHHHHHHHHcCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR--G--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGIT 223 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~--g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~~l~~lgl~ 223 (484)
+++|++.++.. +.++|+|+||+|+|||+|+++. | |.|||+|.|+|+||.++. +++| ++.++.++++.||+
T Consensus 339 ~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~-~~~e~~~~~~~~~~i~~~lgl- 416 (639)
T PRK12444 339 GHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQ-IEDEIKSVMAQIDYVYKTFGF- 416 (639)
T ss_pred HHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHH-HHHHHHHHHHHHHHHHHHcCC-
Confidence 99999976555 3688999999999999998764 6 999999999999988644 5555 89999999999999
Q ss_pred CCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHH
Q 011527 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~ 303 (484)
++.+.++++. + +.+|-++.| +. +.
T Consensus 417 --~~~~~~~~r~--~---~~~G~~e~~----------------~~---------------------------------~~ 440 (639)
T PRK12444 417 --EYEVELSTRP--E---DSMGDDELW----------------EQ---------------------------------AE 440 (639)
T ss_pred --cEEEEEECCc--c---ccCCCHHHH----------------HH---------------------------------HH
Confidence 3888888752 0 112221111 00 00
Q ss_pred HHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccH---------hHhhcCCCCCcee
Q 011527 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQ---------LLSTFGGDDIPAC 373 (484)
Q Consensus 304 ~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~---------L~~~f~~~~~pav 373 (484)
..+.+.|+..|++ +.+|++ +|. || |.+|++...+ +.....|+|||||. +++..|++..|++
T Consensus 441 ---~~l~~~l~~~~~~--y~~~~~--~ga-~Y-~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~l~~~~~~g~~~~P~i 511 (639)
T PRK12444 441 ---ASLENVLQSLNYK--YRLNEG--DGA-FY-GPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVV 511 (639)
T ss_pred ---HHHHHHHHHcCCC--ceeccC--Ccc-cc-cceEEEEeecCCCChhcccceeeecccccccceEEECCCCCccccEE
Confidence 1123344556765 678887 888 88 9999998644 44568899999999 6666677789999
Q ss_pred c---ccchHHHHHHHHHHc--CCCCCCCCCccEEEEEcCc-chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHc
Q 011527 374 G---FGFGDAVILELLKEK--GLLPPLNHQVENIVCALDH-NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARI 447 (484)
Q Consensus 374 G---fsigierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~-~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~ 447 (484)
| +..++||++.+|.+. +.+|.+.+|.+|+|+++++ +...+|.++++.||++|++|++++.+.++++++++|++.
T Consensus 512 ~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid~~~~sl~kq~k~A~k~ 591 (639)
T PRK12444 512 IHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDERDEKLGYKIREAQMQ 591 (639)
T ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHc
Confidence 8 777999999998765 5678778899999999998 688999999999999999999998889999999999999
Q ss_pred CCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 448 NAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 448 gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|++++++||++|.++|+|+||++.+++|.+++++++
T Consensus 592 g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el 627 (639)
T PRK12444 592 KIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMF 627 (639)
T ss_pred CCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHH
Confidence 999999999999999999999999999999998875
No 21
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-46 Score=398.41 Aligned_cols=357 Identities=20% Similarity=0.250 Sum_probs=285.7
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
..++|+++|+|.++.+++.|++.+++++.++||++|.||.++..++|.. +|++ +.++||.+ |.+|+.++|||+.|+
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~-SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp 232 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKI-SGHYTLYRDKLIVF-NMEGDEYGVKPMNCP 232 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhh-ccccccchhhccee-eccCceEEeccCCCH
Confidence 4689999999999999999999999999999999999999999999987 8998 88999998 888999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCC----CCccceEEeEEEEEcCCChh-hHH-HHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPAVT-AEA-ELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~----gr~rEf~Q~g~eiig~~~~~-ada-Evi~l~~~~l~~lgl~~ 224 (484)
+++++++++.. ++++|+|+|++|+|||+|+++. +|.|||+|+|+||||.++.. +|+ |++.++.++++.+|++.
T Consensus 233 ~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~ 312 (545)
T PRK14799 233 AHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKD 312 (545)
T ss_pred HHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999998766 4589999999999999999886 79999999999999997654 676 89999999999999964
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHH
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~ 304 (484)
.++.+.++++. .+.+|.++.| ++. .+.+++.|.++|++....+....+..++ ++....+++.
T Consensus 313 ~~~~i~ls~Rp-----e~~~G~~~~w--------dka----~~~l~~~L~~~gl~~~~~~g~gafygpk-iD~~v~dalg 374 (545)
T PRK14799 313 DDIKPYLSTRP-----DESIGSDELW--------EKA----TNALISALQESGLKFGIKEKEGAFYGPK-IDFEIRDSLG 374 (545)
T ss_pred ccEEEEEEcCh-----hhhcCCHHHH--------HHH----HHHHHHHHHHcCCCeEEecceeccccCc-cceEehhhcC
Confidence 46999999985 2345544322 111 1345666777787765544444444332 2222234444
Q ss_pred HHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCc-ceeecCccccHhHhhcCCCCCceecccchHHHHH
Q 011527 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL-RAICGGGRYDQLLSTFGGDDIPACGFGFGDAVIL 383 (484)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~-~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~ 383 (484)
+..++. ++++|+.+.+.++- +.+.++|.. .|| +...|+..|+||++
T Consensus 375 r~~q~~----------Tiqldf~lp~rf~L------ey~~~~~~~~~pv-----------------~ihr~~~GgiERli 421 (545)
T PRK14799 375 RWWQLS----------TIQVDFNLPERFKL------EYIDKDGIKKRPV-----------------MVHRAIYGSIDRFV 421 (545)
T ss_pred chhhhh----------hhhhhcCcccccce------EEEcCCCCCcccE-----------------EEEccCCCCHHHHH
Confidence 444432 24566665543331 222223321 122 11226777899999
Q ss_pred HHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccc
Q 011527 384 ELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQ 461 (484)
Q Consensus 384 ~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~ 461 (484)
.+|.+. |.+|.|.+|.+|+|++++++...+|.++++.||++|++|++++.++++++++++|++.|+|+++|||++|++
T Consensus 422 ~iL~e~~~G~~P~wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~e 501 (545)
T PRK14799 422 AILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEAS 501 (545)
T ss_pred HHHHHHcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHhh
Confidence 999774 778888889999999999888899999999999999999999988899999999999999999999999999
Q ss_pred cCeEEEEECCCCceeeeccCcC
Q 011527 462 KGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 462 ~~~v~vk~~~~~~~~~v~~~el 483 (484)
+|+|+||++.++++.+|+++++
T Consensus 502 ~~~VtVR~r~~~eq~~v~l~el 523 (545)
T PRK14799 502 EGTVTVRARGNIEVRNVKFEKF 523 (545)
T ss_pred cCeEEEEECCCCceEEEcHHHH
Confidence 9999999999999999998876
No 22
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-45 Score=391.94 Aligned_cols=404 Identities=20% Similarity=0.251 Sum_probs=288.6
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCCh
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T 150 (484)
.+.++|+++|+|.+++++++|++.+++.++++||++|.||+|++.++|.. +|++ +.++||+|.|++|+.++|||+.+
T Consensus 33 ~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~l~LrPt~e 111 (565)
T PRK09194 33 RKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQE-SGRWEEYGPELLRLKDRHGRDFVLGPTHE 111 (565)
T ss_pred cccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhh-cCCccccchhceEEecCCCCEEEECCCCh
Confidence 46789999999999999999999999999999999999999999999976 5764 67899999999999999999887
Q ss_pred HHHHHHHHHcCC-CCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHH---HHHHHHHHHHHHcCCC
Q 011527 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGIT 223 (484)
Q Consensus 151 ~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~lgl~ 223 (484)
.+++.++..... +.++|+|+||+|++||+| +|+.| |.|||+|.|+++||.++..+|+ +++.++.++|++|||
T Consensus 112 ~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl- 190 (565)
T PRK09194 112 EVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGL- 190 (565)
T ss_pred HHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 777766665443 457999999999999999 99999 9999999999999998888887 567888999999999
Q ss_pred CCceEEEeCCHHHHHHHHHh-------CCCCchhhhhHhHHHHhhcc--------------------CCHHHHHHHHHhc
Q 011527 224 ASDVGFRISSRKVLQEVLRC-------HSIPEHLFGKVCIIIDKIEK--------------------LPLDVIKNDLKSA 276 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~~l~~-------~g~~~~~~~~v~~~l~~~~~--------------------~~~~~l~~~L~~~ 276 (484)
+|.+.+++++.+.+..++ .|.++-..+.-|......+. -+...+.+....+
T Consensus 191 --~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~l 268 (565)
T PRK09194 191 --DFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKTIEELAEFL 268 (565)
T ss_pred --ccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCcHHHHHHHh
Confidence 489999998888765432 11111001111111111000 0001111112223
Q ss_pred CCCHHHH-------------------------HHHHHHccCCChhhhhHHHHHHHHHHH----HHHHhcCCc--ceEEEe
Q 011527 277 GMSEAAI-------------------------EELLRVLSIKSLTELEGEAVADLKLLF----SLAEKFGYS--DWIQFD 325 (484)
Q Consensus 277 g~~~~~~-------------------------~~l~~l~~~~~~~~l~~~~~~~L~~l~----~~l~~~g~~--~~i~~D 325 (484)
|++.... .++.+.+....++ ....+++.++. ..+..+|.. ..+.+|
T Consensus 269 g~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~---~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD 345 (565)
T PRK09194 269 NVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLE---LATEEEIRAALGAVPGFLGPVGLPKDVPIIAD 345 (565)
T ss_pred CCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccc---cCCHHHHHHhhCCCCCccCcccCCCCceEEEe
Confidence 3322210 0111111000000 01112222222 122333332 357899
Q ss_pred cCCccCCCceece----------e----EEE--E-----ecCCCcceeec-----------------CccccHhHh-hc-
Q 011527 326 ASVVRGLAYYTGI----------V----FEC--F-----DRDGKLRAICG-----------------GGRYDQLLS-TF- 365 (484)
Q Consensus 326 l~l~r~~~YYtG~----------v----Fe~--~-----~~~g~~~~i~~-----------------GGRYD~L~~-~f- 365 (484)
.++....++++|- . |.. + +..|..++-|+ |-+|.+-++ .|
T Consensus 346 ~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~ 425 (565)
T PRK09194 346 RSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVL 425 (565)
T ss_pred ccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEE
Confidence 9888766666541 1 111 0 11344444442 567775443 23
Q ss_pred --CCCCCc-e-ecccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcC---cchHHHHHHHHHHHHHCCCeEEEEe
Q 011527 366 --GGDDIP-A-CGFGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALD---HNLQGAASMVATTLRGKGQSVDLVL 432 (484)
Q Consensus 366 --~~~~~p-a-vGfsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~---~~~~~~a~~la~~Lr~~Gi~v~~~~ 432 (484)
.++..+ . ..|+||++||+.++.+. | .||...+|.+|+|++++ ++..+++.++++.||++|++|++++
T Consensus 426 ~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Dd 505 (565)
T PRK09194 426 DENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDD 505 (565)
T ss_pred CCCCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEEC
Confidence 122233 2 35999999999999876 5 57888999999999997 4567899999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 433 ESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 433 ~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++.++++++++|+..|+|++|+||++|+++|+|+||++.+|++..|+++++
T Consensus 506 r~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l 556 (565)
T PRK09194 506 RKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDEL 556 (565)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHH
Confidence 888999999999999999999999999999999999999999999998875
No 23
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=9.9e-43 Score=340.14 Aligned_cols=255 Identities=18% Similarity=0.178 Sum_probs=196.2
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCC
Q 011527 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKS 163 (484)
Q Consensus 85 ~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~ 163 (484)
+....++.+++.++++|++|||++|.||+||+++++.. .++.....+++++ |.+|+.++||||+|+|+||+++++..
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~- 82 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPT- 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCC-
Confidence 45667899999999999999999999999999999743 3444444555544 56999999999999999999887532
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHh
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRC 243 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~ 243 (484)
.|.|+||+|+|||+++ +++|+|+|+||.. ..+++|++.++.++++.+|....++ |.|||.++++++++.
T Consensus 83 --~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~-~~a~~e~l~la~~~l~~~g~~~~~~-i~lGh~~~~~~l~~~ 151 (272)
T PRK12294 83 --AATKVAYAGLIIRNNE-------AAVQVGIENYAPS-LANVQQSFKLFIQFIQQQLRDNVHF-VVLGHYQLLDALLDK 151 (272)
T ss_pred --CCceEEEeccEeccCC-------CcceeceEEECCC-chhHHHHHHHHHHHHHHhCCCCCcE-EEeccHHHHHHHHhC
Confidence 3679999999999874 4899999999954 7899999999999999997652224 799999999999984
Q ss_pred CCCCchhhhhHhHHHHhhccCCHHHHHHHHHhc-C-------CCHHHHHHHHHHccCCChhhhhHHHHHHHHHHHHHHHh
Q 011527 244 HSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSA-G-------MSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEK 315 (484)
Q Consensus 244 ~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~-g-------~~~~~~~~l~~l~~~~~~~~l~~~~~~~L~~l~~~l~~ 315 (484)
++...+++.++ .+++...+++.+... + .....++++..+.. . ..+++++|..+.+.++.
T Consensus 152 ----~~~~~~l~~~l---~~Kn~~~l~~~l~~~~~l~~~l~~~~~~~l~~a~~l~~-----~-~~~~~~~L~~l~~~l~~ 218 (272)
T PRK12294 152 ----SLQTPDILSMI---EERNLSGLVTYLSTEHPIVQILKENTQQQLNVLEHYIP-----N-DHPALVELKIWERWLHT 218 (272)
T ss_pred ----HHHHHHHHHHH---HhcCHHHHHHHHhhhhhHHHHHHhchHHHHHHHHHhhh-----h-hHHHHHHHHHHHHHHHh
Confidence 23444554444 445566666655421 0 01111222222110 0 14678999999999988
Q ss_pred cCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCC
Q 011527 316 FGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGG 367 (484)
Q Consensus 316 ~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~ 367 (484)
.|.. .+.+|++++|+++||||+||++|.+ |...+||+|||||+|+++||.
T Consensus 219 ~~~~-~i~~Dl~~~r~~~YYTG~vF~~y~~-~~~~~i~~GGRYD~Ll~~Fg~ 268 (272)
T PRK12294 219 QGYK-DIHLDITAQPPRSYYTGLFIQCHFA-ENESRVLTGGYYKGSIEGFGL 268 (272)
T ss_pred cCCC-eEEEcccccCCCCCcCCeEEEEEEC-CCCCcccCCcCchhHHHhcCC
Confidence 8875 4999999999999999999999984 566799999999999999974
No 24
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=2.7e-42 Score=378.85 Aligned_cols=352 Identities=19% Similarity=0.208 Sum_probs=269.8
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
+.++|+++|+|.++++++.|.+.+++.+.++||++|.||.+++.++|.. +|++ +.++||.| |.+++.++|||+.|+
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~ 385 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVF-EIEKQEFGLKPMNCP 385 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEE-ecCCeeEEEcCCCcH
Confidence 4578999999999999999999999999999999999999999999986 8998 88999998 778999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcC----CCCCccceEEeEEEEEcC-CChhhHH-HHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM----TRGRRREHYQWNMDIIGV-PAVTAEA-ELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~----~~gr~rEf~Q~g~eiig~-~~~~ada-Evi~l~~~~l~~lgl~~ 224 (484)
+++++++++.. +.++|+|+|++|+|||+|.+ +.+|.|||+|+++++||. +...+|+ |++.++.++++.||+
T Consensus 386 ~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~-- 463 (686)
T PLN02908 386 GHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF-- 463 (686)
T ss_pred HHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCC--
Confidence 99999998765 45899999999999999977 456999999999999998 4556777 799999999999999
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHH
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~ 304 (484)
+|.+.++++. +.++...+..+.....++.++++ .|.+-..-+.=..+..++ ++....+++.
T Consensus 464 -~~~~~ls~r~--~~~~g~~~~w~~ae~~l~~~ld~---------------~~~~~~~~~g~~afygpk-id~~~~d~l~ 524 (686)
T PLN02908 464 -TYELKLSTRP--EKYLGDLETWDKAEAALTEALNA---------------FGKPWQLNEGDGAFYGPK-IDITVSDALK 524 (686)
T ss_pred -cEEEEEeCCc--cccCCCHHHHHHHHHHHHHHHHH---------------cCCCcEECCCceeecccc-eEEEEEeccC
Confidence 4999999975 33322211111111223333333 332210000000011111 1211123333
Q ss_pred HHHHHHHHHHhcCCcceEEEecCCcc--CCCceeceeEEEEecCCC--cceeecCccccHhHhhcCCCCCceecccchHH
Q 011527 305 DLKLLFSLAEKFGYSDWIQFDASVVR--GLAYYTGIVFECFDRDGK--LRAICGGGRYDQLLSTFGGDDIPACGFGFGDA 380 (484)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dl~l~r--~~~YYtG~vFe~~~~~g~--~~~i~~GGRYD~L~~~f~~~~~pavGfsigie 380 (484)
++.++ .++++|+.+.. +++||| .++. .+++ +......-++|
T Consensus 525 r~~~~----------~t~q~df~lp~~f~L~Y~~--------e~~~~~~~pv-----------------~ihrai~GsiE 569 (686)
T PLN02908 525 RKFQC----------ATVQLDFQLPIRFKLSYSA--------EDEAKIERPV-----------------MIHRAILGSVE 569 (686)
T ss_pred CEeec----------cceeecccCHhhcCCEEEC--------CCCCcCCCCE-----------------EEEeCceEhHH
Confidence 33332 24677777643 577887 1221 1111 01011122799
Q ss_pred HHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 381 VILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 381 rl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
|++.+|.++ |.+|.|.+|.+|+|++++++...+|.++++.||++|++|+++..+.++++++++|++.|+++++|||++
T Consensus 570 Rli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~viivG~~ 649 (686)
T PLN02908 570 RMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVVGEA 649 (686)
T ss_pred HHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECch
Confidence 999999876 788888889999999999988899999999999999999999888899999999999999999999999
Q ss_pred ccccCeEEEEECCCCceeeeccCcC
Q 011527 459 EWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 459 e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|+++|+|+||++.+++|.+++++++
T Consensus 650 E~~~~~V~vr~~~~~~q~~i~l~el 674 (686)
T PLN02908 650 EAATGTVNVRTRDNVVHGEKKIEEL 674 (686)
T ss_pred HHhCCEEEEEECCCCceeeeeHHHH
Confidence 9999999999999999999998876
No 25
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=3.2e-40 Score=353.63 Aligned_cols=404 Identities=19% Similarity=0.227 Sum_probs=277.5
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCC--
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE-- 148 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD-- 148 (484)
.+.|+|+++|+|.+++++++|++.+++.+.++||++|.||+|++.++|.. +|++ +.++||+|.|+.|+.++|||+
T Consensus 33 ~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~-sg~~~~~~~emf~~~dr~~~~l~LrPT~E 111 (568)
T TIGR00409 33 RRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE-SGRWDTYGPELLRLKDRKGREFVLGPTHE 111 (568)
T ss_pred cccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhh-cCCCCccchhcEEEecCCCCEEEEcCCCc
Confidence 46789999999999999999999999999999999999999999999987 5664 678999999999999999997
Q ss_pred --ChHHHHHHHHHcCCCCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHHHHH---HHHHHHHHHc
Q 011527 149 --LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELI---SSIITFFKRI 220 (484)
Q Consensus 149 --~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~adaEvi---~l~~~~l~~l 220 (484)
+|..+++.+.++ .++|+|+||++++||+| +|+.| |.|||+|.|+++||.+...+|+|+. .++.++|++|
T Consensus 112 e~~t~~~~~~i~sy---r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 112 EVITDLARNEIKSY---KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHhhc---cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 776655565543 36899999999999999 99999 9999999999999998888887755 6679999999
Q ss_pred CCCCCceEEEeCCHHHHHHHHHh-------CCCCchhhhhHhHHHHhhc---------------------cCCHHHHHHH
Q 011527 221 GITASDVGFRISSRKVLQEVLRC-------HSIPEHLFGKVCIIIDKIE---------------------KLPLDVIKND 272 (484)
Q Consensus 221 gl~~~~~~i~i~~~~il~~~l~~-------~g~~~~~~~~v~~~l~~~~---------------------~~~~~~l~~~ 272 (484)
||+ |.+..++++.+.+..++ .|.++-..+.-|......+ .-+...+.+.
T Consensus 189 gL~---~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~~tp~~~ti~~~ 265 (568)
T TIGR00409 189 GLD---FRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKVDTPNTKTIAEL 265 (568)
T ss_pred CCc---ceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceeecCCCCCcHHHH
Confidence 994 77777777666543221 1111100011010000000 0001111111
Q ss_pred HHhcCCCHHHHHH-HHH--------H---ccCC--Chhhhh-HHH-----------HHHHHHHH----HHHHhcCCc--c
Q 011527 273 LKSAGMSEAAIEE-LLR--------V---LSIK--SLTELE-GEA-----------VADLKLLF----SLAEKFGYS--D 320 (484)
Q Consensus 273 L~~~g~~~~~~~~-l~~--------l---~~~~--~~~~l~-~~~-----------~~~L~~l~----~~l~~~g~~--~ 320 (484)
...++++....-+ ++- + +-.+ .++... ..+ -+++..+. .++...|.. .
T Consensus 266 ~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~ 345 (568)
T TIGR00409 266 VECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGPGSLGPVNINGGI 345 (568)
T ss_pred HHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCCCccCccccccCc
Confidence 2222333211100 000 0 0000 000000 000 01111111 122222332 3
Q ss_pred eEEEecCCccCCCc----------eeceeEE----E--E-----ecCCCcceeec-----------------CccccHhH
Q 011527 321 WIQFDASVVRGLAY----------YTGIVFE----C--F-----DRDGKLRAICG-----------------GGRYDQLL 362 (484)
Q Consensus 321 ~i~~Dl~l~r~~~Y----------YtG~vFe----~--~-----~~~g~~~~i~~-----------------GGRYD~L~ 362 (484)
.+.+|.++....++ |.|+.|. . + +..|..++.|+ |-||.+-+
T Consensus 346 ~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~ 425 (568)
T TIGR00409 346 PVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHIFQLGTKYSEAL 425 (568)
T ss_pred eEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEeccchhhhHHhc
Confidence 46777776544333 4444321 1 1 22355555554 55787765
Q ss_pred h-hc---CCCCCc--eecccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcCc---chHHHHHHHHHHHHHCCCe
Q 011527 363 S-TF---GGDDIP--ACGFGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALDH---NLQGAASMVATTLRGKGQS 427 (484)
Q Consensus 363 ~-~f---~~~~~p--avGfsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~ 427 (484)
+ .| .++..| ...++||++|++.++.+. | .||.+.+|++|.|+++.. +..+.|.++.+.|.++|++
T Consensus 426 ~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~ 505 (568)
T TIGR00409 426 KATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSELLAQGVD 505 (568)
T ss_pred CCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHHHHHHHHHHHHhCCCE
Confidence 4 22 122233 335889999999998874 3 579899999999999863 3567899999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 428 VDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 428 v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|.+|+++++++++++.|+..|+|+.|+||.+++++|+|+|+++.++++..|+++++
T Consensus 506 v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l 561 (568)
T TIGR00409 506 VLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDEL 561 (568)
T ss_pred EEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHH
Confidence 99999888999999999999999999999999999999999999999999998875
No 26
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.1e-39 Score=335.52 Aligned_cols=360 Identities=17% Similarity=0.249 Sum_probs=249.0
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCC---C
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRP---E 148 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRp---D 148 (484)
+.++|+++|+|.+++++++|++.+++.+.++||++|.||+|++.++|.. +|++ +.++||++.|++++.++||| +
T Consensus 34 ~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~ 112 (439)
T PRK12325 34 QQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRE-SGRYDAYGKEMLRIKDRHDREMLYGPTNEE 112 (439)
T ss_pred ccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhheEEecCCCCEEEEcCCCcH
Confidence 4699999999999999999999999999999999999999999999976 5874 78999999999999999999 5
Q ss_pred ChHHHHHHHHHcCCCCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChh---hHHHHHHHHHHHHHHcCC
Q 011527 149 LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT---AEAELISSIITFFKRIGI 222 (484)
Q Consensus 149 ~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~---adaEvi~l~~~~l~~lgl 222 (484)
++.+++|....++ .+||+|+||+|+|||+| +++.| |.|||+|.++++|+.+... ...+++.++.++|+.||+
T Consensus 113 ~~~~~~~~~~~sy--rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl 190 (439)
T PRK12325 113 MITDIFRSYVKSY--KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGL 190 (439)
T ss_pred HHHHHHHHHhhhc--hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677777777664 46999999999999999 78778 9999999999999886443 345689999999999999
Q ss_pred CCCceEEEeCCHHHHHHHH-------HhCCCCchhhhhHhHHHHhh---ccCCH--HHHHHHHHhcCCCHHHHHHHHHHc
Q 011527 223 TASDVGFRISSRKVLQEVL-------RCHSIPEHLFGKVCIIIDKI---EKLPL--DVIKNDLKSAGMSEAAIEELLRVL 290 (484)
Q Consensus 223 ~~~~~~i~i~~~~il~~~l-------~~~g~~~~~~~~v~~~l~~~---~~~~~--~~l~~~L~~~g~~~~~~~~l~~l~ 290 (484)
+ .+.+..+.. .+.+.. ...|-++...+.-|. ++. ....+ ..++..|...+.. +
T Consensus 191 ~--~~~v~~~~~-~~gg~~s~ef~~~~~~Ge~~~~~c~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~----------~ 255 (439)
T PRK12325 191 K--AIPMRADTG-PIGGDLSHEFIILAETGESTVFYDKDFL--DLLVPGEDIDFDVADLQPIVDEWTSL----------Y 255 (439)
T ss_pred c--eEEEEEccC-CCCCCcceeeEeecCCCCceEEEcCCch--hhccCCCcccCCHHHHHHHHhhhccc----------c
Confidence 6 455554332 211111 111222111111010 000 00000 0111111100000 0
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHhc--CCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHh-hc--
Q 011527 291 SIKSLTELEGEAVADLKLLFSLAEKF--GYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLS-TF-- 365 (484)
Q Consensus 291 ~~~~~~~l~~~~~~~L~~l~~~l~~~--g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~-~f-- 365 (484)
. ...++ ..-.++ +....+..--++.-|..++-|.. |..-++ .|
T Consensus 256 ---~-------~~~~~----~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~------------------ys~~f~~~y~d 303 (439)
T PRK12325 256 ---A-------ATEEM----HDEAAFAAVPEERRLSARGIEVGHIFYFGTK------------------YSEPMNAKVQG 303 (439)
T ss_pred ---c-------chhhh----hccCCCCcCCCcceeecceEEEEeeecCccc------------------ccHhcCCEEEC
Confidence 0 00000 000000 00000100000001112222222 211100 00
Q ss_pred -CCCC--CceecccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEc---CcchHHHHHHHHHHHHHCCCeEEEEeC
Q 011527 366 -GGDD--IPACGFGFGDAVILELLKEK-----G-LLPPLNHQVENIVCAL---DHNLQGAASMVATTLRGKGQSVDLVLE 433 (484)
Q Consensus 366 -~~~~--~pavGfsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~---~~~~~~~a~~la~~Lr~~Gi~v~~~~~ 433 (484)
.++. +....|++|++|++.+|.+. | .+|.+.+|.+|+|+++ +++..+++.++++.||++|++|+++++
T Consensus 304 ~~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~ 383 (439)
T PRK12325 304 PDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDT 383 (439)
T ss_pred CCCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 0111 22345889999999999887 5 7888899999999999 455778999999999999999999988
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 434 SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 434 ~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+.++++++++|++.|+|++|+||++|+++|+|+||++.++++..|+++++
T Consensus 384 ~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el 433 (439)
T PRK12325 384 DERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAA 433 (439)
T ss_pred CCCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCceEEEEHHHH
Confidence 88999999999999999999999999999999999999999999998876
No 27
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=1.2e-34 Score=305.52 Aligned_cols=324 Identities=21% Similarity=0.280 Sum_probs=235.6
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC----CCe
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~----G~~ 142 (484)
.+++...++|+++|+|.+++++++|++.+++.++++||++|.||+|++.++|....++. +.++||.+.|.+ ++.
T Consensus 20 ~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~ 99 (472)
T TIGR00408 20 EIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEP 99 (472)
T ss_pred CCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCc
Confidence 35666789999999999999999999999999999999999999999999998743443 578999999876 489
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC---CCCccceEEeEEEEEcCCChhhHHH---HHHHHHH
Q 011527 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVPAVTAEAE---LISSIIT 215 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~---~gr~rEf~Q~g~eiig~~~~~adaE---vi~l~~~ 215 (484)
++|||+.|++++.++++... +.+||+|+|++++|||+|.++ .+|.|||+|.+++.+..+...++.| ++.++.+
T Consensus 100 l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~ 179 (472)
T TIGR00408 100 LALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKE 179 (472)
T ss_pred EEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999988877654 468999999999999999763 3599999999999665554455544 7899999
Q ss_pred HHH-HcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC
Q 011527 216 FFK-RIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (484)
Q Consensus 216 ~l~-~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~ 294 (484)
+++ .||++ +.+..... .+.+ .|.. ..++
T Consensus 180 i~~~~lglp---~~~~~~~~-------------~ek~------------------------~ga~--------~~~~--- 208 (472)
T TIGR00408 180 FIENSLAIP---YFVGRKPE-------------WEKF------------------------AGAE--------YTWA--- 208 (472)
T ss_pred HHHhccCCe---EEEEecCc-------------hhhc------------------------CCcc--------ceEE---
Confidence 997 89985 43321100 0000 0000 0000
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCC-ceeceeEEEEe--cCCCcceeecCccccHhHhhcCCCCCc
Q 011527 295 LTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLA-YYTGIVFECFD--RDGKLRAICGGGRYDQLLSTFGGDDIP 371 (484)
Q Consensus 295 ~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~-YYtG~vFe~~~--~~g~~~~i~~GGRYD~L~~~f~~~~~p 371 (484)
++....+ | ..+++- ....++ +|+ -.|.+.. ++|. +..+
T Consensus 209 ~e~~~~d---------------g--r~~q~~--t~~~Lg~~~s-k~f~i~y~~~~g~-------------------~~~~ 249 (472)
T TIGR00408 209 FETIMPD---------------G--RTLQIA--TSHNLGQNFA-KTFEIKFETPTGD-------------------KEYA 249 (472)
T ss_pred EeEEEcC---------------C--CEEEEe--eeeccccccc-HhcCCEEECCCCC-------------------EEee
Confidence 0000000 0 001100 000000 011 0111111 1111 1112
Q ss_pred eecccchH-HHHHHHHHHc-----C-CCCCCCCCccEEEEEc--C----cchHHHHHHHHHHHHHCCCeEEEEeCCCCHH
Q 011527 372 ACGFGFGD-AVILELLKEK-----G-LLPPLNHQVENIVCAL--D----HNLQGAASMVATTLRGKGQSVDLVLESKPLK 438 (484)
Q Consensus 372 avGfsigi-erl~~~l~e~-----~-~~p~~~~~~~v~Vi~~--~----~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~ 438 (484)
.. +++|+ +|++.+|.+. | .+|.+.+|.||+|+|+ + ++...+|.++++.||++|++|++++++.+++
T Consensus 250 h~-~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~g 328 (472)
T TIGR00408 250 YQ-TSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPG 328 (472)
T ss_pred EE-ccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Confidence 22 44454 9999998642 3 4688889999999997 3 3467899999999999999999998888999
Q ss_pred HHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 439 WVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 439 ~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+++++|++.|+|++|+||++|+++|+|+||++.++++..|+++++
T Consensus 329 kk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el 373 (472)
T TIGR00408 329 RKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQL 373 (472)
T ss_pred HHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHH
Confidence 999999999999999999999999999999999999999998875
No 28
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-34 Score=310.60 Aligned_cols=374 Identities=18% Similarity=0.251 Sum_probs=275.8
Q ss_pred ccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHH
Q 011527 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (484)
Q Consensus 80 ~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~ 159 (484)
+++.+-...+++.+...+.++|++||+.++.||-+-... .......+.+.++|++|..+.|++|++.||||++++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~-----~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~ 999 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRN-----ACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSR 999 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCcccccc-----ccchhccceeeeecCCCCEEEeeccccchHHHHhhh
Confidence 456677778999999999999999999999999554432 111235678999999999999999999999999998
Q ss_pred cCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHH
Q 011527 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (484)
Q Consensus 160 ~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~ 239 (484)
|.. +-+|+|.++.|||... .. +|+|++||++||||......|||+|.++.+++.. -+...++.|++||..++++
T Consensus 1000 N~~---~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~-~l~~~n~~i~lnH~~LL~A 1073 (1351)
T KOG1035|consen 1000 NSV---LSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE-ILHEGNCDIHLNHADLLEA 1073 (1351)
T ss_pred chH---HHHHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH-HhccCceeEEeChHHHHHH
Confidence 865 4789999999999776 44 9999999999999997669999999999999987 3444589999999999999
Q ss_pred HHHhCCCCchhhhhHhHHHHhhcc--CCHHHHHHHHHhcCCCH--HHHHHHHHH-----------------ccCC-Chhh
Q 011527 240 VLRCHSIPEHLFGKVCIIIDKIEK--LPLDVIKNDLKSAGMSE--AAIEELLRV-----------------LSIK-SLTE 297 (484)
Q Consensus 240 ~l~~~g~~~~~~~~v~~~l~~~~~--~~~~~l~~~L~~~g~~~--~~~~~l~~l-----------------~~~~-~~~~ 297 (484)
++.+||+|++++..|..++..... ....+. .+...+++. ....+|..+ ...+ ..+.
T Consensus 1074 i~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~~--~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1151 (1351)
T KOG1035|consen 1074 ILSHCGIPKDQRRKVAELLSDMGSSRPQRSEK--ELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRGKLRADS 1151 (1351)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhhccccHHHH--HHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhhhhhhhH
Confidence 999999999999998877654321 111111 111111111 011111111 0000 1223
Q ss_pred hhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEec-----CCCcceeecCccccHhHhhcCCCC---
Q 011527 298 LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDR-----DGKLRAICGGGRYDQLLSTFGGDD--- 369 (484)
Q Consensus 298 l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~-----~g~~~~i~~GGRYD~L~~~f~~~~--- 369 (484)
+.. ++++|+.+.+++..+|+...+.|+.++.+....-.|++|++.+. .|....+++|||||.++..|++..
T Consensus 1152 ~vr-~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~~~~~~~~~~~~ 1230 (1351)
T KOG1035|consen 1152 LVR-ALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSLLQEVRDEQKMN 1230 (1351)
T ss_pred HHH-HHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCcCCceeeecccchHHHHHHhhhhhhhc
Confidence 335 89999999999999999988999999666555556999999742 244567899999999999887521
Q ss_pred C-ceecccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHHHHHHHc
Q 011527 370 I-PACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES-KPLKWVFKRAARI 447 (484)
Q Consensus 370 ~-pavGfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~-~~~~~~~~~a~~~ 447 (484)
. +|+|++.- ..+...+...-..++.+..|||+||+.+......+++++++||+.||++++.... .+.+++.++|+..
T Consensus 1231 ~p~a~gv~~~-~~~~~~~~~~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~~s~~~~e~~e~~~~~ 1309 (1351)
T KOG1035|consen 1231 LPGAIGVSAL-STIRQHAPKDLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPDPSPSLEELTEYANEH 1309 (1351)
T ss_pred Ccccceehhh-HHHHHhhhccccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeCCCcchHHHHHHHhcC
Confidence 2 36665522 1111111111112344567999999999778889999999999999999998764 5688899999877
Q ss_pred CCCEEEEEcCCccccCeEEEEECCCC
Q 011527 448 NAQRLILVGTTEWQKGMVGVKILSSG 473 (484)
Q Consensus 448 gi~~~iiig~~e~~~~~v~vk~~~~~ 473 (484)
-|.+++++- ++..+||...-.
T Consensus 1310 ~i~~iliv~-----n~~~~vks~~~e 1330 (1351)
T KOG1035|consen 1310 EITCILIVT-----NQKEKVKSFELE 1330 (1351)
T ss_pred ceEEEEEEe-----cceeeechhHHh
Confidence 676666664 677778776543
No 29
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-34 Score=300.34 Aligned_cols=309 Identities=22% Similarity=0.250 Sum_probs=226.6
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHHH--cCCeeecCCccccHHHhhhhhccc--cccceEEEE--------eC-----
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE--------DR----- 138 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~~--~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~--------D~----- 138 (484)
..|++||+|.++.+++.|++.+++.+.. +||.+|.||.+.+.++|.. +||+ +.+.||... |.
T Consensus 27 ~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~-SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~ 105 (456)
T PRK04173 27 LAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEA-SGHVDNFSDPLVECKKCKKRYRADHLIEEL 105 (456)
T ss_pred hhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhh-cCCccccCCceeEeCCCCCEeechhhhHHH
Confidence 6799999999999999999999999988 8999999999999999987 7886 677888763 11
Q ss_pred --------------------------------------------------CCCeEeeCCCChHHHHHHHHHcCC-CC-CC
Q 011527 139 --------------------------------------------------GNRRVALRPELTPSLARLVIQKGK-SV-SL 166 (484)
Q Consensus 139 --------------------------------------------------~G~~l~LRpD~T~~iaR~~~~~~~-~~-~l 166 (484)
++..+.||||....+.=.+.+..+ +. +|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dL 185 (456)
T PRK04173 106 GIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKL 185 (456)
T ss_pred hhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccC
Confidence 112346777766555444433322 34 79
Q ss_pred CeeEEEecCeeeeCc-CCCC--CccceEEeEEEEEcCCChhh-H-HHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHH
Q 011527 167 PLKWFAVGQCWRYER-MTRG--RRREHYQWNMDIIGVPAVTA-E-AELISSIITFFKRIGITASDVGFRISSRKVLQEVL 241 (484)
Q Consensus 167 Plk~yyig~vfR~e~-~~~g--r~rEf~Q~g~eiig~~~~~a-d-aEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l 241 (484)
|++++++|+|||+|. +..| |.|||+|.++++|..++... + ..++.++.+++..+|++ .+.++++.+.
T Consensus 186 Plr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~--~~~~~~s~~~------ 257 (456)
T PRK04173 186 PFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGID--PENLRFREHL------ 257 (456)
T ss_pred CeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCC--ccceEEEecC------
Confidence 999999999999995 3345 89999999999999875422 2 23678888888888886 3444544321
Q ss_pred HhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHHHHHHHHHHHHhcCCcce
Q 011527 242 RCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDW 321 (484)
Q Consensus 242 ~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~~L~~l~~~l~~~g~~~~ 321 (484)
T Consensus 258 -------------------------------------------------------------------------------- 257 (456)
T PRK04173 258 -------------------------------------------------------------------------------- 257 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCccCCCceeceeEEEEe--cCCC----cceeecCccccHhHh--hcCCC-------------CCc-eecccchH
Q 011527 322 IQFDASVVRGLAYYTGIVFECFD--RDGK----LRAICGGGRYDQLLS--TFGGD-------------DIP-ACGFGFGD 379 (484)
Q Consensus 322 i~~Dl~l~r~~~YYtG~vFe~~~--~~g~----~~~i~~GGRYD~L~~--~f~~~-------------~~p-avGfsigi 379 (484)
.++++||++.+|++.. +.|. ...+++||+|| |.. .|++. ..| .++.|+|+
T Consensus 258 -------~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dyd-L~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGi 329 (456)
T PRK04173 258 -------PEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYD-LSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGL 329 (456)
T ss_pred -------cchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhh-cccchhhcCCCeEEEecCCCCceeeeEEEEecccH
Confidence 1111111111111100 0000 01245677777 432 22211 134 45999999
Q ss_pred HHHHHHH-HHc--C------------CCCCCCCCccEEEEEcCc--chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHH
Q 011527 380 AVILELL-KEK--G------------LLPPLNHQVENIVCALDH--NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFK 442 (484)
Q Consensus 380 erl~~~l-~e~--~------------~~p~~~~~~~v~Vi~~~~--~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~ 442 (484)
||++.++ .+. + .+|.+.+|.+|+|+++++ +...+|.++++.||++ ++|+++. ..+++++++
T Consensus 330 eRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~-~~slgkkir 407 (456)
T PRK04173 330 DRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDD-SGSIGKRYR 407 (456)
T ss_pred HHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeC-CCCHHHHHH
Confidence 9965554 433 2 578889999999999987 3778999999999999 9999984 568999999
Q ss_pred HHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 443 RAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 443 ~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+|++.|+|++|+||++|+++|+|+||++.+++|..++++++
T Consensus 408 ~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el 448 (456)
T PRK04173 408 RQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDEL 448 (456)
T ss_pred HHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHH
Confidence 99999999999999999999999999999999999998875
No 30
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-33 Score=294.88 Aligned_cols=327 Identities=20% Similarity=0.232 Sum_probs=232.8
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC----CCe
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~----G~~ 142 (484)
.+++...++|+++|+|.+++++++|++.+++.+.++||++|.||+|.+.++|...+|+. +.++||.+.|.+ ++.
T Consensus 26 ~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~ 105 (477)
T PRK08661 26 ELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEK 105 (477)
T ss_pred cCcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCce
Confidence 45667779999999999999999999999999999999999999999999997656664 578999999876 568
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCC--CCccceEEeEEEEEcCCChhhHHH---HHHHHHHH
Q 011527 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAVTAEAE---LISSIITF 216 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~--gr~rEf~Q~g~eiig~~~~~adaE---vi~l~~~~ 216 (484)
++|||+..+.+.-++++... +.+||+|+||+++|||+|.+.+ +|.|||+|.+.+++..+..+++.| ++.++.++
T Consensus 106 l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i 185 (477)
T PRK08661 106 LALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEF 185 (477)
T ss_pred EEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 99999995555444443322 3579999999999999996655 599999999999987765555544 77999999
Q ss_pred H-HHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCCh
Q 011527 217 F-KRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295 (484)
Q Consensus 217 l-~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~ 295 (484)
+ +.||++ +.+.... + ++.. .|..
T Consensus 186 ~~~~Lglp---~~~~~~~--------------~-----------------~ekf------~ga~---------------- 209 (477)
T PRK08661 186 FEDYLAIP---VIIGKKT--------------E-----------------WEKF------AGAD---------------- 209 (477)
T ss_pred HHHhcCCe---EEEEecC--------------h-----------------HHhh------CCCc----------------
Confidence 9 888985 3222110 0 0000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCce-ec
Q 011527 296 TELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPA-CG 374 (484)
Q Consensus 296 ~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pa-vG 374 (484)
.+..+|..+..|...=.|++|+.- ...+=.-+=+|.+ .=|....+. ..
T Consensus 210 ------------------------~~~~ie~~~~dgr~~q~gt~~~Lg----~~~s~~f~i~y~d---~~g~~~~v~~~s 258 (477)
T PRK08661 210 ------------------------YTYTIEAMMPDGKALQAGTSHYLG----QNFAKAFDIKFQD---KDGKLEYVHQTS 258 (477)
T ss_pred ------------------------ceeEEEEEeCCCCEEEEEEecccc----cchhHhcCCEEEC---CCCCEeeeEEec
Confidence 000011000001111112221110 0000000001100 001111121 22
Q ss_pred ccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEc------CcchHHHHHHHHHHHHHCCCeEEEEe-CCCCHHHHH
Q 011527 375 FGFGDAVILELLKEK-----G-LLPPLNHQVENIVCAL------DHNLQGAASMVATTLRGKGQSVDLVL-ESKPLKWVF 441 (484)
Q Consensus 375 fsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~------~~~~~~~a~~la~~Lr~~Gi~v~~~~-~~~~~~~~~ 441 (484)
++++ +|++.+|.+. | .+|++.+|.+|+|+++ +++...+|.++++.||++|++|++++ ++.++++++
T Consensus 259 ~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~ 337 (477)
T PRK08661 259 WGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKF 337 (477)
T ss_pred ccHH-HHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
Confidence 4444 9999998763 3 4688888999999999 55578899999999999999999998 678999999
Q ss_pred HHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 442 KRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 442 ~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|++.|+|++|+||++|+++|+|+|+++.++++..|++++|
T Consensus 338 ~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el 379 (477)
T PRK08661 338 NEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDEL 379 (477)
T ss_pred HHHHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHH
Confidence 999999999999999999999999999999999999998875
No 31
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=1.3e-33 Score=306.50 Aligned_cols=354 Identities=18% Similarity=0.234 Sum_probs=258.9
Q ss_pred ccccc--CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEee
Q 011527 70 KIDVN--PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVAL 145 (484)
Q Consensus 70 ~~~~~--~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~L 145 (484)
.++++ ..+|++.|+|.++++++.|++.+++...++||++|.||.|.+.++|.. +|++ +.++||.+.|.+++.++|
T Consensus 228 lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~y~l 306 (614)
T PLN02837 228 LFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKT-SGHLDFYKENMYDQMDIEDELYQL 306 (614)
T ss_pred CcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhh-cCCcccchhhcccccCCCCceEEE
Confidence 44444 367999999999999999999999999999999999999999999976 7876 688999999988999999
Q ss_pred CCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC--CC--CccceEEeEEEEEcCCChhhHH---HHHHHHHHHH
Q 011527 146 RPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFF 217 (484)
Q Consensus 146 RpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~--~g--r~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~l 217 (484)
||..++.++-++.+... +.+||+|++++|+|||+|..+ .| |.|||+|.++++|..++. ++. +++.++.+++
T Consensus 307 ~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q-~~~e~~~~l~~~~~~~ 385 (614)
T PLN02837 307 RPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKDEIRGVLDLTEEIL 385 (614)
T ss_pred CCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHH-HHHHHHHHHHHHHHHH
Confidence 99999998888877654 568999999999999999753 34 999999999999987653 333 4889999999
Q ss_pred HHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhh
Q 011527 218 KRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE 297 (484)
Q Consensus 218 ~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~ 297 (484)
+.||++ .+.+.++.+. -+..|.++.|.+.-+ .+++.|...|++....+.-.++..++ +|.
T Consensus 386 ~~lg~~--~~~~~~~t~~-----~~~~g~~~~w~~~~~------------~l~~~l~~~~~~~~~~~g~~afygpk-id~ 445 (614)
T PLN02837 386 KQFGFS--KYEINLSTRP-----EKSVGSDDIWEKATT------------ALRDALDDKGWEYKVDEGGGAFYGPK-IDL 445 (614)
T ss_pred HHcCCC--eEEEEecCCc-----hhccCCHHHHHHHHH------------HHHHHHHHcCCCceeCCCcccccCcc-eee
Confidence 999997 5777777653 134454443322211 12333444443221110001111111 110
Q ss_pred hhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCc-eeceeEEEEecCCCcceeecCccccHhHhhcCCCCCcee---
Q 011527 298 LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAY-YTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPAC--- 373 (484)
Q Consensus 298 l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~Y-YtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pav--- 373 (484)
...+++. + .+.. .++++|+.+...++- |. .++|. +..|.+
T Consensus 446 ~~~d~~g---r------~~q~-~tiqldf~~~~~f~l~y~-------~~d~~-------------------~~~pv~ih~ 489 (614)
T PLN02837 446 KIEDALG---R------KWQC-STIQVDFNLPERFDITYV-------DSNSE-------------------KKRPIMIHR 489 (614)
T ss_pred EeeccCC---c------eeee-cceeEeecchhhcCcEEE-------CCCCC-------------------ccCCEEEEc
Confidence 0000000 0 0000 234555544433221 11 12221 123322
Q ss_pred c-ccchHHHHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCC
Q 011527 374 G-FGFGDAVILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQ 450 (484)
Q Consensus 374 G-fsigierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~ 450 (484)
+ ++ ++||++.+|.+. |.+|.+.+|.+|+|++++++...+|.++++.||++|++|++ +.+.++++++++|++.|+|
T Consensus 490 ~~~G-~~eRlia~Lie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~~~slgkkir~A~~~gip 567 (614)
T PLN02837 490 AILG-SLERFFGVLIEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CHGERLPKLIRNAETQKIP 567 (614)
T ss_pred CCcc-CHHHHHHHHHHHcCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eCCCCHHHHHHHHHHcCCC
Confidence 1 22 689999999886 77888899999999999988889999999999999999999 4678999999999999999
Q ss_pred EEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 451 RLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 451 ~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|+||++|.++|+|+||++.++++..++++++
T Consensus 568 ~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el 600 (614)
T PLN02837 568 LMAVVGPKEVETRTLTVRSRHGGELGTMPVDDF 600 (614)
T ss_pred EEEEEcchhhhcCEEEEEECCCCceeEeeHHHH
Confidence 999999999999999999999999999998775
No 32
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-31 Score=289.29 Aligned_cols=341 Identities=19% Similarity=0.181 Sum_probs=248.1
Q ss_pred ccccccC--CCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEe
Q 011527 69 QKIDVNP--PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVA 144 (484)
Q Consensus 69 ~~~~~~~--p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~ 144 (484)
..+++.. ..|+.-|+|.++++++.|++.+++.+.++||++|.||.+...++|.. +|+. +.++||.+ +.+++.++
T Consensus 207 ~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~-sgh~~~f~e~my~v-~~~~e~l~ 284 (613)
T PRK03991 207 ELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAI-REHADKFGERQYRV-KSDKKDLM 284 (613)
T ss_pred CCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhh-cccccccchhceEe-cCCCceEE
Confidence 3445544 57999999999999999999999999999999999999988888765 5664 67899998 45578999
Q ss_pred eCCCChHHHHHHHHHcCC-CCCCCeeEEEecC-eeeeCcCC--CC--CccceEEeEEEEEcCCChhhHHH---HHHHHHH
Q 011527 145 LRPELTPSLARLVIQKGK-SVSLPLKWFAVGQ-CWRYERMT--RG--RRREHYQWNMDIIGVPAVTAEAE---LISSIIT 215 (484)
Q Consensus 145 LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~-vfR~e~~~--~g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~ 215 (484)
|||..+++++-++..... +.+||+|+|++|+ +||+|.++ .| |.|||+|.++++|+.+..++..| ++.++.+
T Consensus 285 Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 285 LRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILE 364 (613)
T ss_pred EecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 999999999988877654 5789999999999 99999754 34 99999999999999864444433 7899999
Q ss_pred HHHHcCCCCCceEEEeCCHH-HHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC
Q 011527 216 FFKRIGITASDVGFRISSRK-VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (484)
Q Consensus 216 ~l~~lgl~~~~~~i~i~~~~-il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~ 294 (484)
+++.||++ +.+.++... +++. . .+.+++.+...|.+-
T Consensus 365 i~~~lGl~---~~~~~~~t~df~~~-------~------------------~~~l~~~l~~~g~~~-------------- 402 (613)
T PRK03991 365 TGEDLGRD---YEVAIRFTEDFYEE-------N------------------KDWIVELVKREGKPV-------------- 402 (613)
T ss_pred HHHHcCCC---eEEEecCHHHHhhh-------H------------------HHHHHHHHHHcCCCE--------------
Confidence 99999994 777765431 1110 0 011222222222220
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeec-----CccccHhHh-----h
Q 011527 295 LTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICG-----GGRYDQLLS-----T 364 (484)
Q Consensus 295 ~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~-----GGRYD~L~~-----~ 364 (484)
.+..++ +...|-|..+++...++.++++.. |..|..-.+ .
T Consensus 403 --------------------------~~~~~~----g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~ 452 (613)
T PRK03991 403 --------------------------LLEILP----ERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDE 452 (613)
T ss_pred --------------------------EecccC----CccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECC
Confidence 000010 111111222222111111111111 111111000 0
Q ss_pred cCCCCCc-eeccc-ch-HHHHHHHHHHc--CC--------CCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEE
Q 011527 365 FGGDDIP-ACGFG-FG-DAVILELLKEK--GL--------LPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLV 431 (484)
Q Consensus 365 f~~~~~p-avGfs-ig-ierl~~~l~e~--~~--------~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~ 431 (484)
-|....| .+|.+ +| ++|++.++.++ +. +|.|.+|.+|+|++++++..++|.++++.||++|++|+++
T Consensus 453 ~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lD 532 (613)
T PRK03991 453 NGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVD 532 (613)
T ss_pred CCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0111245 33533 44 99999998874 33 8999999999999999888999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 432 LESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 432 ~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+++.++++++++|++.|+|++|+||++|+++|+|+||++.++++..|+++++
T Consensus 533 dr~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~el 584 (613)
T PRK03991 533 DRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEEL 584 (613)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHH
Confidence 8888999999999999999999999999999999999999999999998875
No 33
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=3.3e-32 Score=287.91 Aligned_cols=351 Identities=23% Similarity=0.287 Sum_probs=267.6
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
...+|+.-|+|.++.+++.+++.++.....+||++|.||.+...++|.. +|++ +.++||.+. ..++.++|||+.|+
T Consensus 207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~-SGH~~~y~e~mf~~~-~~~~~~~lKpmNCp 284 (589)
T COG0441 207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWEL-SGHWDNYKEDMFLTE-SDDREYALKPMNCP 284 (589)
T ss_pred ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchh-ccchhhccccceeec-cCChhheeeeccCH
Confidence 4789999999999999999999999999999999999999999999987 7886 789999874 44599999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCC--C--CccceEEeEEEEEcCCChh-hH-HHHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR--G--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~--g--r~rEf~Q~g~eiig~~~~~-ad-aEvi~l~~~~l~~lgl~~ 224 (484)
.++..+.+... ++.+|+|++.+|.|||+|.++. | |.|.|+|-|++||+..+.. .+ .+++.++..+++.+|++
T Consensus 285 gh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~- 363 (589)
T COG0441 285 GHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFT- 363 (589)
T ss_pred hHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence 99999887665 6789999999999999998764 4 9999999999999984433 33 35789999999999997
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHH
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~ 304 (484)
+|.+.++.+. +.+|.++.|-.. ...+...|+..+++....+.=..++.++ ++....+++.
T Consensus 364 -~y~~~ls~r~------k~ig~d~~W~~a------------~~~l~~al~~~~~~~~~~~G~~aFyGPK-id~~v~Dalg 423 (589)
T COG0441 364 -DYEVKLSTRP------KFIGSDEMWDKA------------EAALREALKEIGVEYVEEPGEGAFYGPK-IDFQVKDALG 423 (589)
T ss_pred -eEEEEEecCC------cccCChhhhHHH------------HHHHHHHHHhhCceeeecCCceEEECcc-cceEEEeccC
Confidence 7999998876 345554444211 1122333444443321110001122222 1111011211
Q ss_pred HHHHHHHHHHhcCCcceEEEecCCccCCC-ceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCce---ecccchHH
Q 011527 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLA-YYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPA---CGFGFGDA 380 (484)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~-YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pa---vGfsigie 380 (484)
.- -.-.+|++|+.+..-++ .|.+ .+|. ...|. ++..-.+|
T Consensus 424 r~----------~q~~TIQlDf~lpeRF~l~Yv~-------~d~~-------------------~~~PvmiHrai~GSiE 467 (589)
T COG0441 424 RE----------WQLGTIQLDFNLPERFDLEYVD-------EDGE-------------------KKRPVIIHRAILGSIE 467 (589)
T ss_pred cc----------eecceEEEecCChhhceEEEEc-------CCCC-------------------ccCCEEEEeccchhHH
Confidence 11 11146888888764332 2332 2222 12332 22323589
Q ss_pred HHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 381 VILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 381 rl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
|.+.+|.|. |.+|.|.+|.||.|+|++++..++|.++++.|++.|++|++++++++++++++.|...++|++++||++
T Consensus 468 Rfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyiiVvG~k 547 (589)
T COG0441 468 RFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYVIVVGDK 547 (589)
T ss_pred HHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEEEEEchh
Confidence 999998874 788999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEEECCCCceeeeccCcC
Q 011527 459 EWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 459 e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|.+++.|.||.+.+.++..++++++
T Consensus 548 E~e~~~v~vR~r~~~~~~~~~l~e~ 572 (589)
T COG0441 548 EVETGTVVVRRRGGKQQKSMTLEEL 572 (589)
T ss_pred hhccCceEEEEccCCccccccHHHH
Confidence 9999999999999988888888775
No 34
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.95 E-value=9.2e-26 Score=225.44 Aligned_cols=158 Identities=23% Similarity=0.380 Sum_probs=139.8
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
..++|+++|+|.++++++.|++.++++++++||++|.||+|++.++|.. +|+. +.++||++ +.+|+.++|||+.|+
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~l~LRP~~~~ 94 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPF-EEEDEEYGLKPMNCP 94 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEe-ccCCceEEEcccCCH
Confidence 3689999999999999999999999999999999999999999999987 5764 67899999 556789999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCC----CCccceEEeEEEEEcCCCh-hhHH-HHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPAV-TAEA-ELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~----gr~rEf~Q~g~eiig~~~~-~ada-Evi~l~~~~l~~lgl~~ 224 (484)
+++|+++++.. +.++|+|+||+|+|||+|.++. +|.|||+|.|+|+||.++. .+|. |++.++.++++.||+.
T Consensus 95 ~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~- 173 (298)
T cd00771 95 GHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFF- 173 (298)
T ss_pred HHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCC-
Confidence 99999998654 4689999999999999997642 6999999999999987643 3343 6999999999999997
Q ss_pred CceEEEeCCHH
Q 011527 225 SDVGFRISSRK 235 (484)
Q Consensus 225 ~~~~i~i~~~~ 235 (484)
.+.+.+++++
T Consensus 174 -~~~i~l~~~~ 183 (298)
T cd00771 174 -DYKVELSTRP 183 (298)
T ss_pred -cEEEEEEcCh
Confidence 6899999976
No 35
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.9e-27 Score=232.18 Aligned_cols=340 Identities=21% Similarity=0.226 Sum_probs=254.1
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCCh
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T 150 (484)
.++.+|-..|+|.++++.+.+.+.++..++++||+||.||.+-...+|.. +|++ +.++||+|. ...+.++|.|+.|
T Consensus 178 ~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~-SGHwqnY~enmF~~e-~eke~~~LKPMNC 255 (560)
T KOG1637|consen 178 HELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWET-SGHWQNYSENMFKFE-VEKEEFALKPMNC 255 (560)
T ss_pred ccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhh-ccchhhhhhhceeee-echhhhccCccCC
Confidence 56889999999999999999999999999999999999999999999987 8998 889999994 4667799999999
Q ss_pred HHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCC----CCccceEEeEEEEEcCCC-hhhHHH-HHHHHHHHHHHcCCC
Q 011527 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPA-VTAEAE-LISSIITFFKRIGIT 223 (484)
Q Consensus 151 ~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~----gr~rEf~Q~g~eiig~~~-~~adaE-vi~l~~~~l~~lgl~ 223 (484)
++++-+...+.+ ++.+|+|+.-+|.+.|+|-++. .|.|.|.|-+++||+.++ +..|.+ ++..+..++.-+|.
T Consensus 256 PgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fgf- 334 (560)
T KOG1637|consen 256 PGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFGF- 334 (560)
T ss_pred CccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhccc-
Confidence 999988888766 5789999999999999996553 499999999999999865 445544 77777777777776
Q ss_pred CCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHH
Q 011527 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~ 303 (484)
.+.+.++.+.- +.+|.-+-|- +. ...+++.|+..|.+......=.++++++ +|....+++
T Consensus 335 --~f~l~lSTRPe-----~~lG~l~~Wd--------~A----E~~L~~al~e~g~pw~lN~GDGAFYGPK-IDi~l~Dal 394 (560)
T KOG1637|consen 335 --TFKLNLSTRPE-----KFLGDLETWD--------EA----EFKLEEALNESGEPWVLNPGDGAFYGPK-IDITLDDAL 394 (560)
T ss_pred --cceeEeccChH-----HhccCHHHHH--------HH----HHHHHHHHHHhCCCceecCCCcccccce-eeeEhhhhc
Confidence 48888888642 1223222110 00 1123444555554422111001122222 222212332
Q ss_pred HHHHHHHHHHHhcCCcceEEEecCCccC--CCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCce-ecccc--h
Q 011527 304 ADLKLLFSLAEKFGYSDWIQFDASVVRG--LAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPA-CGFGF--G 378 (484)
Q Consensus 304 ~~L~~l~~~l~~~g~~~~i~~Dl~l~r~--~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pa-vGfsi--g 378 (484)
..-.+ -.+|++|+.+.-- +.|-+ .+|. | ..|+ |--+| .
T Consensus 395 ~r~hQ----------caTIQLDFqLP~rFdL~y~~--------~~g~---------~----------erPVmIHRAIlGS 437 (560)
T KOG1637|consen 395 GRKHQ----------CATIQLDFQLPIRFDLEYET--------EDGD---------L----------ERPVMIHRAILGS 437 (560)
T ss_pred Ccccc----------eeeeeecccChhhcCceeec--------cccc---------c----------cchhhHHHHHhhh
Confidence 22111 1358888887532 23322 1222 1 2332 23333 4
Q ss_pred HHHHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 379 DAVILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 379 ierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
++|++++|.|. |.+|-|..|.++.||+++++...+|-++.++|..+|+-++++.++.++.++++.|...++.++++||
T Consensus 438 vERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVG 517 (560)
T KOG1637|consen 438 VERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVG 517 (560)
T ss_pred HHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHHhhhceeecCCccchHHHHHhhhhhcceeEEEEEc
Confidence 89999999985 7899999999999999999989999999999999999999998888899999999999999999999
Q ss_pred CCccccCeEEEEECCC
Q 011527 457 TTEWQKGMVGVKILSS 472 (484)
Q Consensus 457 ~~e~~~~~v~vk~~~~ 472 (484)
++|.+.+.|.|+.+.+
T Consensus 518 dkE~~~~~vnVr~Rd~ 533 (560)
T KOG1637|consen 518 DKEVETGRVNVRTRDN 533 (560)
T ss_pred hhhhhcCceeeecccc
Confidence 9999999999999743
No 36
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.94 E-value=2.1e-26 Score=222.47 Aligned_cols=148 Identities=24% Similarity=0.405 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhh-ccccccceEEEEeCC----CCeEeeCCCChHHHHHHHHHc
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA-GEEIRDQLYCFEDRG----NRRVALRPELTPSLARLVIQK 160 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~-g~~~~~~~~~~~D~~----G~~l~LRpD~T~~iaR~~~~~ 160 (484)
++.++++|++.+++.|.++||++|.||+|++.++|..+. ++.+.++||.+.|++ |+.++||||.|++++|+++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 367899999999999999999999999999999997632 345788999999987 899999999999999999987
Q ss_pred CCC-CCCCeeEEEecCeeeeCcCC---CCCccceEEeEEEEEcCC--ChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCH
Q 011527 161 GKS-VSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVP--AVTAEAELISSIITFFKRIGITASDVGFRISSR 234 (484)
Q Consensus 161 ~~~-~~lPlk~yyig~vfR~e~~~---~gr~rEf~Q~g~eiig~~--~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~ 234 (484)
... .++|+|+||+|+|||+|.++ .+|.|||+|.|+|+||.+ ...++.|++.++.++++.||+ ++.+.+++.
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl---~~~i~~~~~ 157 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL---PVRVVVADD 157 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 653 67999999999999999776 579999999999999998 567889999999999999998 488888886
Q ss_pred HH
Q 011527 235 KV 236 (484)
Q Consensus 235 ~i 236 (484)
+.
T Consensus 158 ~~ 159 (235)
T cd00670 158 PF 159 (235)
T ss_pred hh
Confidence 53
No 37
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.5e-26 Score=234.82 Aligned_cols=394 Identities=21% Similarity=0.226 Sum_probs=251.0
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeC
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALR 146 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LR 146 (484)
.|++. +.+|++.|+|.+.+++++|++.+++.+.+.|.+|+..|+|.|.++|.. +|++ +.++||+++|++++.++||
T Consensus 30 g~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkE-s~r~~~f~~El~~v~drg~~~l~L~ 107 (500)
T COG0442 30 GMIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKE-SGRWEGFGPELFRVKDRGDRPLALR 107 (500)
T ss_pred Cceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHH-hChhhhcchhhEEEEccCCceeeeC
Confidence 34444 889999999999999999999999999999999999999999888776 7876 7899999999999999999
Q ss_pred CC---ChHHHHHHHHHcCCCCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHHH---HHHHHHHHH
Q 011527 147 PE---LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFF 217 (484)
Q Consensus 147 pD---~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~~l 217 (484)
|- .-.+++|.+.+++ ++||+++|||+++||+| ||.+| |.|||++.+++.|..+...++.+ .+.++.++|
T Consensus 108 PTsEe~it~~~~~~i~SY--kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if 185 (500)
T COG0442 108 PTSEEVITDMFRKWIRSY--KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIF 185 (500)
T ss_pred CCcHHHHHHHHHHHhhhh--hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 94 4456666666664 47999999999999999 66776 99999999999999988777765 679999999
Q ss_pred HHcCCCCCceEEEeCCHHHHHHHHHh----CC--CCchhhhh---HhHHHHhhc-c---CCHH--HHHH-HHHhcCCCHH
Q 011527 218 KRIGITASDVGFRISSRKVLQEVLRC----HS--IPEHLFGK---VCIIIDKIE-K---LPLD--VIKN-DLKSAGMSEA 281 (484)
Q Consensus 218 ~~lgl~~~~~~i~i~~~~il~~~l~~----~g--~~~~~~~~---v~~~l~~~~-~---~~~~--~l~~-~L~~~g~~~~ 281 (484)
.++|+. +..+..+.++..+-.++ +- ..+++... .-.-+++.. . ...+ +... .-..++++..
T Consensus 186 ~~i~l~---~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r 262 (500)
T COG0442 186 LRLPLI---FGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTR 262 (500)
T ss_pred HhCCce---EEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEee
Confidence 999984 55555555544332111 00 00000000 000000000 0 0000 0000 0000111110
Q ss_pred HHHHHHHHcc----------CCChhh--------hh------HHHHHHHHHHHHHHHhcCCcceEEEe-cC-CccCCCce
Q 011527 282 AIEELLRVLS----------IKSLTE--------LE------GEAVADLKLLFSLAEKFGYSDWIQFD-AS-VVRGLAYY 335 (484)
Q Consensus 282 ~~~~l~~l~~----------~~~~~~--------l~------~~~~~~L~~l~~~l~~~g~~~~i~~D-l~-l~r~~~YY 335 (484)
. +..++. +..+.. .. ...++.-+.+..-++.++ ..+..| .+ ...|.-|+
T Consensus 263 ~---~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~--~~~~~D~~~~~~~G~kl~ 337 (500)
T COG0442 263 I---IGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLG--IRVEGDDRSPDGPGFKLN 337 (500)
T ss_pred e---eeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcc--eEEeccccCCCCCCceee
Confidence 0 000000 000000 00 001111122222233333 336667 32 22232222
Q ss_pred eceeEEEEecCCCcceeecCccccHhHhh-c---CCCC--CceecccchHHHHHHHHHHc-----C-CCCCCCCCccEEE
Q 011527 336 TGIVFECFDRDGKLRAICGGGRYDQLLST-F---GGDD--IPACGFGFGDAVILELLKEK-----G-LLPPLNHQVENIV 403 (484)
Q Consensus 336 tG~vFe~~~~~g~~~~i~~GGRYD~L~~~-f---~~~~--~pavGfsigierl~~~l~e~-----~-~~p~~~~~~~v~V 403 (484)
. .--.|.+-.+--|-||..-+.. + .++. ...+.+++|++|++..+.++ | .+|...+|.++.|
T Consensus 338 ~------~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~i 411 (500)
T COG0442 338 I------WEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHI 411 (500)
T ss_pred e------eeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEE
Confidence 2 1001222233445566544221 1 1223 33556999999966665543 2 2565678999999
Q ss_pred EEcCc-c--hHHHHHHHHHHHHHCC-CeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeec
Q 011527 404 CALDH-N--LQGAASMVATTLRGKG-QSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIK 479 (484)
Q Consensus 404 i~~~~-~--~~~~a~~la~~Lr~~G-i~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~ 479 (484)
++.+. + ....+.++...|...| ..|.+++++++.+.++..|+..|+|+.+++|++ .+.|.+.+|.+.+|+...++
T Consensus 412 v~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~ 490 (500)
T COG0442 412 VPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVT 490 (500)
T ss_pred EEcCchhHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchhhcc
Confidence 99875 2 3445567788888899 899988888899999999999999999999977 67899999999999877775
Q ss_pred cC
Q 011527 480 LD 481 (484)
Q Consensus 480 ~~ 481 (484)
.+
T Consensus 491 ~~ 492 (500)
T COG0442 491 IE 492 (500)
T ss_pred HH
Confidence 43
No 38
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.93 E-value=2.2e-26 Score=224.89 Aligned_cols=163 Identities=20% Similarity=0.294 Sum_probs=141.8
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCCh
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T 150 (484)
.+.++|++||+|.+++++++|++.++++++++||++|.||+|++.++|.. +|+. +.++||++.|++|+.++|||+.+
T Consensus 17 ~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-sg~~~~~~~emy~~~d~~~~~l~LrPt~e 95 (255)
T cd00779 17 RQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKE-SGRWDAYGPELLRLKDRHGKEFLLGPTHE 95 (255)
T ss_pred ccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCccccCcccEEEecCCCCeEEEecCCc
Confidence 45799999999999999999999999999999999999999999999976 4773 67899999999999999999977
Q ss_pred HHHHHHHHHcCC-CCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHH---HHHHHHHHHHHHcCCC
Q 011527 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGIT 223 (484)
Q Consensus 151 ~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~lgl~ 223 (484)
.+++-++++... +.++|+|+||+|+|||+| +++.| |.|||+|+++++||.+...+|+ |++.++.++|+.|||+
T Consensus 96 ~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~ 175 (255)
T cd00779 96 EVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLP 175 (255)
T ss_pred HHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 666655554332 347899999999999999 89999 9999999999999998778887 6888999999999994
Q ss_pred CCceEEEeCCHHHHHH
Q 011527 224 ASDVGFRISSRKVLQE 239 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~ 239 (484)
+.+..++.+.+.+
T Consensus 176 ---~~~~~~~~~~~gg 188 (255)
T cd00779 176 ---FVKVEADSGAIGG 188 (255)
T ss_pred ---EEEEEecCCCCCC
Confidence 7777777666543
No 39
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6e-25 Score=212.94 Aligned_cols=350 Identities=20% Similarity=0.291 Sum_probs=229.6
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCCh
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T 150 (484)
....+|++-|+|-+.+..+++.+.+...|..-|.+.|..|.+.+.++|.. +|.| ...++|+|-|++|+.++|.|...
T Consensus 38 ~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWek-TgRw~~~gsEl~rl~Dr~gkq~cL~pThE 116 (457)
T KOG2324|consen 38 RPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEK-TGRWDAMGSELFRLHDRKGKQMCLTPTHE 116 (457)
T ss_pred ccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHh-cCcccccchhheEeeccCCCEeccCCchH
Confidence 45678999999999999999999999999999999999999999999986 7887 57899999999999999999777
Q ss_pred HHHHHHHHHcCC--CCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHH---HHHHHHHHHHHHcCC
Q 011527 151 PSLARLVIQKGK--SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGI 222 (484)
Q Consensus 151 ~~iaR~~~~~~~--~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~lgl 222 (484)
-.+.+.+++... +.++|+++||||+.||+| +|++| |-|||++.|++.|..+...|-+ -|...+.++|+.||+
T Consensus 117 E~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~ 196 (457)
T KOG2324|consen 117 EDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGL 196 (457)
T ss_pred HHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777777776543 678999999999999999 88887 8999999999999887655443 367999999999998
Q ss_pred CCCceEEEeCCHHHHHHHHHh-CCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHH
Q 011527 223 TASDVGFRISSRKVLQEVLRC-HSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGE 301 (484)
Q Consensus 223 ~~~~~~i~i~~~~il~~~l~~-~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~ 301 (484)
+ |.-.=.+.+.+.+-+++ +.+..+. +.+.+. .....|.+.. -+. +.+.... .+..
T Consensus 197 p---fVkv~AdsG~iGG~vShEfhl~~~v--------------gED~l~-~C~~C~~s~n-~e~-~~~sk~~----~Cp~ 252 (457)
T KOG2324|consen 197 P---FVKVWADSGDIGGEVSHEFHLIHPV--------------GEDTLM-SCPSCGYSKN-SED-LDLSKIA----SCPK 252 (457)
T ss_pred C---eEEEeecccccCceeeeeEeccCcc--------------Ccccee-ecCcCCccCc-hhh-hcCCccc----cCCc
Confidence 5 43222344554443322 1111100 000000 0011111100 000 0010000 0000
Q ss_pred HHH-HHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHh-hc---CCCC--Cceec
Q 011527 302 AVA-DLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLS-TF---GGDD--IPACG 374 (484)
Q Consensus 302 ~~~-~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~-~f---~~~~--~pavG 374 (484)
+-+ .|..+ -+ |.+ +..||-|.. |..-++ .| .+++ .....
T Consensus 253 C~~~~L~~~------~~----IEV------gHtF~LG~k------------------YS~~lna~f~~~~gKpe~l~MgC 298 (457)
T KOG2324|consen 253 CNEGRLTKT------KS----IEV------GHTFLLGTK------------------YSKPLNAKFVNVEGKPEFLHMGC 298 (457)
T ss_pred ccCCCcccc------cc----eEE------EEEEEeccc------------------cccccCceeeeecCCcceEEecc
Confidence 000 11110 01 222 333444433 222211 11 1222 23445
Q ss_pred ccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcC-cchHHHHHHHHHHHHHCCC----eEEEEeCC---CCHHHH
Q 011527 375 FGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALD-HNLQGAASMVATTLRGKGQ----SVDLVLES---KPLKWV 440 (484)
Q Consensus 375 fsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~-~~~~~~a~~la~~Lr~~Gi----~v~~~~~~---~~~~~~ 440 (484)
++||+.|++++..+- + .||...+|.+|.++... ......+.+++.+|-.... .-++.+++ -++++.
T Consensus 299 yGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~R 378 (457)
T KOG2324|consen 299 YGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKR 378 (457)
T ss_pred eeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHh
Confidence 899999999998764 2 37888999999544444 3445556677776654221 12333333 269999
Q ss_pred HHHHHHcCCCEEEEEc-CCccccCeEEEEECCCCceeeeccC
Q 011527 441 FKRAARINAQRLILVG-TTEWQKGMVGVKILSSGEQYEIKLD 481 (484)
Q Consensus 441 ~~~a~~~gi~~~iiig-~~e~~~~~v~vk~~~~~~~~~v~~~ 481 (484)
++.|++.|+|++|||| ..-+.+..++|+-...|+..+...+
T Consensus 379 i~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~ 420 (457)
T KOG2324|consen 379 IKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKD 420 (457)
T ss_pred hhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchh
Confidence 9999999999999999 4556778999999888887766554
No 40
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.91 E-value=2.9e-23 Score=218.94 Aligned_cols=374 Identities=20% Similarity=0.282 Sum_probs=222.9
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHH-HHcCCeeecCCccccHHHhhhhhccc--cccce---------EE---------
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRDQL---------YC--------- 134 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~---------~~--------- 134 (484)
..|++||.|.+..++++|++.|++.| ...|+.+|++|+|.+.++|.. +||. +.+-| |+
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~a-SGh~~~F~D~mv~~~~~~~~~RaD~l~e~~~ 104 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKA-SGHVDNFTDWMVDCKSCKERFRADHLIEEKL 104 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHh-cCCccccCCceeecCCCCCEecchHHHHHHh
Confidence 57999999999999999999999988 577999999999999999976 6763 11111 11
Q ss_pred --------------------EEeC------------------------CCCeEeeCCCChHHHH----HHHHHcCCCCCC
Q 011527 135 --------------------FEDR------------------------GNRRVALRPELTPSLA----RLVIQKGKSVSL 166 (484)
Q Consensus 135 --------------------~~D~------------------------~G~~l~LRpD~T~~ia----R~~~~~~~~~~l 166 (484)
+..+ ++....||||...++- |.+-.+ ...+
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~--~~kl 182 (551)
T TIGR00389 105 GKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFF--RRKL 182 (551)
T ss_pred hhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhc--CCCC
Confidence 0001 1346889999776654 333222 2468
Q ss_pred CeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhH---HHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHH
Q 011527 167 PLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAE---AELISSIITFFKRIGITASDVGFRISSRKVLQEV 240 (484)
Q Consensus 167 Plk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~ad---aEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~ 240 (484)
|+-..|||++||+| .|+.| |.|||+|+-+|.|..++.... .++......++.+ +.+ ..+ +...
T Consensus 183 PfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~------~~~-~~~----~~ea 251 (551)
T TIGR00389 183 PFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPR------QMQ-ESG----IGEA 251 (551)
T ss_pred CeeehhhhHhhhcccCcccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccc------hhh-hcc----HHHH
Confidence 99999999999999 78777 999999999999987642111 1122222111111 000 001 2222
Q ss_pred HHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhH---HHHH-HHHHHHHHHHhc
Q 011527 241 LRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG---EAVA-DLKLLFSLAEKF 316 (484)
Q Consensus 241 l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~---~~~~-~L~~l~~~l~~~ 316 (484)
++.==++.++..- . ......+|.++|++++.+. +-.. .-+++.. ++.+ ++..-+...+-.
T Consensus 252 v~~g~i~n~~~~y---~--------~~~~~~fl~~~Gi~~~~lr----frqh-~~~e~AHYa~~~~D~e~~~~~Gw~E~~ 315 (551)
T TIGR00389 252 VESGMIENETLGY---F--------IARVKQFLLEIGINPDKLR----FRQH-DKNEMAHYAKDCWDFEFLTPYGWIECV 315 (551)
T ss_pred HHhcccchHHHHH---H--------HHHHHHHHHHhCCCHHHee----eccc-CcHHHhhhccccEeEEEecCCCcEEEE
Confidence 2210011111000 0 1223445666777655332 0000 0000000 0000 000001122223
Q ss_pred CCcceEEEecCCccCCCceeceeEEEEecCCCc------------ceee--cCccccHhHhh------------------
Q 011527 317 GYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL------------RAIC--GGGRYDQLLST------------------ 364 (484)
Q Consensus 317 g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~------------~~i~--~GGRYD~L~~~------------------ 364 (484)
|+.++-.+||+-. .=+||.-..++.+...+ ..++ -++.+-.+++.
T Consensus 316 G~a~R~~yDL~~H---~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (551)
T TIGR00389 316 GIADRGDYDLTQH---SKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEV 392 (551)
T ss_pred EeccccccChHHH---HHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccce
Confidence 3333333444321 11233322222110000 0000 00000001000
Q ss_pred ----------------cCCCCCc-eecccchHHHHHHHHHHcC--------------CCCCCCCCccEEEEEcCcc--hH
Q 011527 365 ----------------FGGDDIP-ACGFGFGDAVILELLKEKG--------------LLPPLNHQVENIVCALDHN--LQ 411 (484)
Q Consensus 365 ----------------f~~~~~p-avGfsigierl~~~l~e~~--------------~~p~~~~~~~v~Vi~~~~~--~~ 411 (484)
.+.+-+| .+--|+|+||++.++.+++ .+|.+.+|.+|+|++++++ ..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~P~VIepS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~ 472 (551)
T TIGR00389 393 ELDKDLVEIEMVTEVVHGEKYIPHVIEPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELK 472 (551)
T ss_pred ecchhhhhheeeeeccCCcEecceEEEcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHH
Confidence 0112256 3467788999998876632 2466678999999999854 78
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 412 GAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 412 ~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
..|.++++.||++|++|+++..+ ++++++++|++.|+|++|+||++|+++|+|+||++.+++|..+++++|
T Consensus 473 ~~A~eIa~~LR~~GI~VeiD~s~-sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL 543 (551)
T TIGR00389 473 EIAKEIFQALRKTGIRIKYDDSG-TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKEL 543 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHH
Confidence 89999999999999999998766 499999999999999999999999999999999999999999988775
No 41
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.91 E-value=8.6e-24 Score=207.38 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=139.6
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCCC----Ce
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGN----RR 142 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~G----~~ 142 (484)
+++..+++|+++|+|.+++++++|++.+++.++++||++|.||+|++.++|. ++|+. ..+++|.+.|.+| +.
T Consensus 15 ~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~~ 93 (264)
T cd00772 15 LADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEED 93 (264)
T ss_pred CccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCce
Confidence 4455679999999999999999999999999999999999999999999995 46775 3478999999877 89
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHHH---HHHHHHH
Q 011527 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIIT 215 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~ 215 (484)
++|||+.|++++++++.... +.++|+|+||+++|||+| ++++| |.|||+|.++++|+.+...+++| ++.++.+
T Consensus 94 l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~ 173 (264)
T cd00772 94 FALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAE 173 (264)
T ss_pred EEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 468999999999999999 78788 99999999999998877777776 4577799
Q ss_pred HHHHcC-CCCCceEEEeCCH
Q 011527 216 FFKRIG-ITASDVGFRISSR 234 (484)
Q Consensus 216 ~l~~lg-l~~~~~~i~i~~~ 234 (484)
+++.|| ++ +.+....+
T Consensus 174 i~~~l~~lp---~~~~~~~~ 190 (264)
T cd00772 174 IARDLAAID---FIEGEADE 190 (264)
T ss_pred HHHhcCCcc---EEEEEcCC
Confidence 999999 64 66655443
No 42
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.87 E-value=9.4e-21 Score=194.58 Aligned_cols=91 Identities=23% Similarity=0.242 Sum_probs=83.4
Q ss_pred CCCCCCCccEEEEEcCcc---hHHHHHHHHHHHHHCCC-eEEEEeCCCCHHHHHHHHHHcCCCEEEEE-------cCCcc
Q 011527 392 LPPLNHQVENIVCALDHN---LQGAASMVATTLRGKGQ-SVDLVLESKPLKWVFKRAARINAQRLILV-------GTTEW 460 (484)
Q Consensus 392 ~p~~~~~~~v~Vi~~~~~---~~~~a~~la~~Lr~~Gi-~v~~~~~~~~~~~~~~~a~~~gi~~~iii-------g~~e~ 460 (484)
+|.|.+|++|.|+|+.++ ..++|.++++.|+++|+ +|++|. +.+++++++.|+..|+||+|+| |++|.
T Consensus 428 lp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dd-sesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~ 506 (539)
T PRK14894 428 LKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDD-TGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPA 506 (539)
T ss_pred CCcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcC-CCCHhHHHHhhhccCCCEEEEEeccccccccchh
Confidence 348899999999999963 45899999999999998 999987 6699999999999999999999 88898
Q ss_pred ccCeEEEEECCCCceeeeccCcC
Q 011527 461 QKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 461 ~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++++|+||++.+++|..|+++++
T Consensus 507 e~gTVTVR~RDs~eQ~rV~idel 529 (539)
T PRK14894 507 LAGTVTVRDRDTMAQERVPISEL 529 (539)
T ss_pred hcCeEEEEEeCCCeEEEEEHHHH
Confidence 89999999999999999999876
No 43
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.86 E-value=9.4e-22 Score=192.18 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=124.1
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcC--CeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCCh-
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG--FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT- 150 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~G--y~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T- 150 (484)
..++|++||+|.+++++++|++.+++.|.++| |++|+||++++.++|..+.|++ |.+++.++||||+|
T Consensus 19 ~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~---------d~~~~~~~Lrp~~~~ 89 (254)
T cd00774 19 GGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV---------ESGGNLGYLRPETAQ 89 (254)
T ss_pred cChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc---------CCCCcccccCCcccc
Confidence 45899999999999999999999999999996 9999999999997776544442 45677899999999
Q ss_pred ---HHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCC---CCccceEEeEEEEEcCCChhhH--HHHHHHHHHHHHHcCC
Q 011527 151 ---PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGI 222 (484)
Q Consensus 151 ---~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~---gr~rEf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl 222 (484)
++++|.+..+.. ++|+|+||+|+|||+|.+++ +|.|||+|+|+|+||.++...+ ..++.++.++++++|+
T Consensus 90 ~~~~~~~~~~~~~~~--~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~ 167 (254)
T cd00774 90 GIFVNFKNLLEFNRR--KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQ 167 (254)
T ss_pred hHHHHHHHHHHHhCC--CCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCC
Confidence 788898876653 78999999999999997665 7999999999999997653222 3488999999999998
Q ss_pred CCCceEEEeC
Q 011527 223 TASDVGFRIS 232 (484)
Q Consensus 223 ~~~~~~i~i~ 232 (484)
....+.+...
T Consensus 168 ~~~~~r~~~~ 177 (254)
T cd00774 168 SPENLRLTDH 177 (254)
T ss_pred CccceEEEec
Confidence 7555555543
No 44
>PLN02734 glycyl-tRNA synthetase
Probab=99.85 E-value=5.5e-20 Score=196.90 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=96.3
Q ss_pred Cc-eecccchHHHHHHHHHHcC-------------CCCCCCCCccEEEEEcCcc--hHHHHHHHHHHHHHCCCeEEEEeC
Q 011527 370 IP-ACGFGFGDAVILELLKEKG-------------LLPPLNHQVENIVCALDHN--LQGAASMVATTLRGKGQSVDLVLE 433 (484)
Q Consensus 370 ~p-avGfsigierl~~~l~e~~-------------~~p~~~~~~~v~Vi~~~~~--~~~~a~~la~~Lr~~Gi~v~~~~~ 433 (484)
+| .+=-|+|++||+.++.++. .+|++.+|++|.|+++..+ ....|.++++.||++|++|++++.
T Consensus 528 iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~ 607 (684)
T PLN02734 528 TPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDIT 607 (684)
T ss_pred cCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 45 4466778889999987631 2688899999999988753 578999999999999999999988
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 434 SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 434 ~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+.++++++++|++.|+|++|+||. +|+|+||++.+++|..|+++++
T Consensus 608 ~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeL 653 (684)
T PLN02734 608 GTSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEV 653 (684)
T ss_pred CCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCCceEEeeHHHH
Confidence 889999999999999999999996 7999999999999999998875
No 45
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.84 E-value=7.5e-21 Score=186.55 Aligned_cols=154 Identities=21% Similarity=0.252 Sum_probs=128.0
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCC----eE
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----RV 143 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~----~l 143 (484)
+++.+.++|+++|+|.+++++++|++.+++.+.++||++|.||.|++.++|..++|+. +.++||++.|.+++ .+
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 4556678899999999999999999999999999999999999999999986556765 57899999987654 79
Q ss_pred eeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC---CCCccceEEeEEEEEcCCChhhHH---HHHHHHHHH
Q 011527 144 ALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVPAVTAEA---ELISSIITF 216 (484)
Q Consensus 144 ~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~---~gr~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~ 216 (484)
+|||+.+++++-.+++... +.++|+|+|++|+|||+|.++ .+|.|||+|.+++++-.+...++. +++.++.++
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i 174 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEF 174 (261)
T ss_pred EEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999977776666655433 457999999999999999655 359999999999875544444443 378999999
Q ss_pred HHHc-CCC
Q 011527 217 FKRI-GIT 223 (484)
Q Consensus 217 l~~l-gl~ 223 (484)
++.| ||+
T Consensus 175 ~~~llgl~ 182 (261)
T cd00778 175 YEDLLAIP 182 (261)
T ss_pred HHHhCCCe
Confidence 9999 985
No 46
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1e-19 Score=186.12 Aligned_cols=377 Identities=19% Similarity=0.228 Sum_probs=221.1
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHHH--cCCeeecCCccccHHHhhhhhccc--ccc---------c-----------
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE--IRD---------Q----------- 131 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~~--~Gy~eI~tP~le~~~l~~~~~g~~--~~~---------~----------- 131 (484)
..|++||.|.+..++++|++.|++.|-. -|..+|+||++.|.++|.. +||. +.+ +
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kA-SGHvd~FsDplv~c~~c~~~yRADHLiEe~ 107 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKA-SGHVDKFSDPLVECKKCGERYRADHLIEEY 107 (558)
T ss_pred cccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhh-cCcccccccceeeccccchhhhhhHHHHHH
Confidence 4699999999999999999999999954 5899999999999999975 5652 000 0
Q ss_pred ----------------------------------------eEEE-Ee-CCCCeEeeCCCChHHH----HHHHHHcCCCCC
Q 011527 132 ----------------------------------------LYCF-ED-RGNRRVALRPELTPSL----ARLVIQKGKSVS 165 (484)
Q Consensus 132 ----------------------------------------~~~~-~D-~~G~~l~LRpD~T~~i----aR~~~~~~~~~~ 165 (484)
||+- +- .+|+...|||+.-..+ -|.+-.. ...
T Consensus 108 l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~--r~k 185 (558)
T COG0423 108 LGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFA--RNK 185 (558)
T ss_pred hhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHh--ccC
Confidence 2221 11 2467899999866544 3433222 236
Q ss_pred CCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChh---hHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHH
Q 011527 166 LPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT---AEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (484)
Q Consensus 166 lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~---adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~ 239 (484)
+|+-..|||+.||+| .|+.| |.|||+|+-+|.|-.+... .-.|+-.. .|.+-+...+..... .+
T Consensus 186 lPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~------~l~l~~~~~q~~~~~----~E 255 (558)
T COG0423 186 LPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDE------KLPLLPREAQEEGTE----EE 255 (558)
T ss_pred CCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCcccCcchhhhhhh------hcccccHHHhhhhhh----hh
Confidence 899999999999999 67776 9999999999999875431 00111110 011100000000000 00
Q ss_pred HHHhCCCCchhhh-hHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHHHHH-----HHHHHH
Q 011527 240 VLRCHSIPEHLFG-KVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLK-----LLFSLA 313 (484)
Q Consensus 240 ~l~~~g~~~~~~~-~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~~L~-----~l~~~l 313 (484)
.++. | +.. +..... ......+|..+|++.+.+..-..+ .+++..-+.+-.. ......
T Consensus 256 Av~~-g----~~~n~~~~y~-------~~~~~~fl~~lGI~~e~lRfrqh~-----~~E~AHYa~~twD~E~~~~~~gWi 318 (558)
T COG0423 256 AVEE-G----IVENETLAYF-------IARTKFFLEDLGIDPEKLRFRQHL-----PEELAHYSKDTWDAEYKFPFGGWI 318 (558)
T ss_pred hhhc-c----eeechhHHHH-------HHHHHHHHHHcCCCHHHhhhhhcC-----hHHHhhhhhcceeEEEecCCCceE
Confidence 0000 0 000 000000 011233455566665433211000 0000000000000 000011
Q ss_pred HhcCCcceEEEecCCccCCCceeceeEEEEecCCCccee-------ecCccc--------------cHhHhhcC------
Q 011527 314 EKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAI-------CGGGRY--------------DQLLSTFG------ 366 (484)
Q Consensus 314 ~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i-------~~GGRY--------------D~L~~~f~------ 366 (484)
+-.|+.++-.+||+-.-..+=-...||+-|.......-. .-|-++ +.+....+
T Consensus 319 E~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~ 398 (558)
T COG0423 319 ELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSK 398 (558)
T ss_pred EEEEeecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCcccccc
Confidence 223444333444432111110112344443211000000 012222 00000001
Q ss_pred -------------CCCCc-eecccchHHHHHHHHHHcC-------------CCCCCCCCccEEEEEcCcc--hHHHHHHH
Q 011527 367 -------------GDDIP-ACGFGFGDAVILELLKEKG-------------LLPPLNHQVENIVCALDHN--LQGAASMV 417 (484)
Q Consensus 367 -------------~~~~p-avGfsigierl~~~l~e~~-------------~~p~~~~~~~v~Vi~~~~~--~~~~a~~l 417 (484)
.+-+| .|--|+|++|++-++.+.. .+|+..+|++++|+|+.+. ..+.|.++
T Consensus 399 ~~~~i~~~~~~~~e~~iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i 478 (558)
T COG0423 399 DLVIIEEVEKVTGEKYIPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEI 478 (558)
T ss_pred chhheeeeeeccCceecCceeccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHH
Confidence 11256 4568889999998875431 1577789999999999864 78899999
Q ss_pred HHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 418 ATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 418 a~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
.+.|++.|+.|++++.+ ++++.++.++..|.||.|.|..+.+++++||||++.|-+|.-|+++||
T Consensus 479 ~~~L~~~~~~v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el 543 (558)
T COG0423 479 FEKLRELGFNVDYDDSG-SIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEEL 543 (558)
T ss_pred HHHHHhcCceEEecCCC-cHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHH
Confidence 99999999999988555 999999999999999999999999999999999999999999999886
No 47
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.83 E-value=4.5e-20 Score=170.14 Aligned_cols=145 Identities=30% Similarity=0.461 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHH-HcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCC--C
Q 011527 89 LRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGK--S 163 (484)
Q Consensus 89 ~~~~i~~~i~~~f~-~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~--~ 163 (484)
++++|++.+++.+. ++||++|.||+|.+.++|.. +|+. +.++||.+.|++++.++|||+.+++++.++..... +
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 47899999999999 99999999999999999987 7774 67889999999999999999999999999988654 3
Q ss_pred CCCCeeEEEecCeeeeC-cCC--CCCccceEEeEEEEEcCCC--hhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHH
Q 011527 164 VSLPLKWFAVGQCWRYE-RMT--RGRRREHYQWNMDIIGVPA--VTAEAELISSIITFFKRIGITASDVGFRISSRKV 236 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e-~~~--~gr~rEf~Q~g~eiig~~~--~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i 236 (484)
.++|+|+|++|+|||+| ++. ..|.|||+|.++++||.++ .....+++.++.++++.||+. ++.+..++++-
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~--~~~~~~~~~~~ 155 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLE--PYRIVLSSSGE 155 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSG--CEEEEEEETCT
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCc--eEEEEEcCCCc
Confidence 56999999999999999 555 4599999999999999983 234467999999999999994 58888887543
No 48
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.76 E-value=7.2e-18 Score=171.54 Aligned_cols=133 Identities=21% Similarity=0.346 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCccccHHHhh---hhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFI---RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 88 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~---~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
.-++.+++.++++|..+||+||.||+|+..+.+. ...+..+.+++|.+. +.++||||+|++++|+++.+....
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N~~~l 315 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKLDRAL 315 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHhhhhc
Confidence 4678999999999999999999999997555442 222233567888872 369999999999999998765445
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEE
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGF 229 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i 229 (484)
++|+|+||+|+|||+|.++.+|.|||+|+|++++|.+...+|+| .++.++|+.||+. |.+
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDle--alL~e~Lr~LGId---fei 375 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLE--AIIKDFLDHLEID---FEI 375 (453)
T ss_pred cCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHH--HHHHHHHHHCCCc---eEE
Confidence 78999999999999999999999999999999999988777665 6899999999983 665
No 49
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.69 E-value=1.4e-16 Score=159.07 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=125.3
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
...|++-|+|.++++++.|++.+++.+.+.||++|.||.|.+.++|.. +|++ +.++||++.| +.++|+|..+.+
T Consensus 40 ~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~~~f~v~~---~~~~L~pt~e~~ 115 (297)
T cd00770 40 SGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG-TGQLPKFDEQLYKVEG---EDLYLIATAEVP 115 (297)
T ss_pred CCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh-cCcCccChhcccEecC---CCEEEeecCCHH
Confidence 456799999999999999999999999999999999999999999976 6774 6789999955 789999999999
Q ss_pred HHHHHHHcCC-CCCCCeeEEEecCeeeeCcC-C----CC--CccceEEeEEEEEcCCChh--hHHHHHHHHHHHHHHcCC
Q 011527 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM-T----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGI 222 (484)
Q Consensus 153 iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~-~----~g--r~rEf~Q~g~eiig~~~~~--adaEvi~l~~~~l~~lgl 222 (484)
++.++++... +.++|+|+|++|+|||+|.. . .| |.|||+|.++.+|+.++.. .-.+++.++.++++.||+
T Consensus 116 ~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl 195 (297)
T cd00770 116 LAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGL 195 (297)
T ss_pred HHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999987543 56899999999999999954 2 34 8999999999999987432 123589999999999999
Q ss_pred C
Q 011527 223 T 223 (484)
Q Consensus 223 ~ 223 (484)
+
T Consensus 196 ~ 196 (297)
T cd00770 196 P 196 (297)
T ss_pred c
Confidence 6
No 50
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.65 E-value=5e-16 Score=165.23 Aligned_cols=150 Identities=23% Similarity=0.414 Sum_probs=122.9
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccH-------------------HHhhhhhcc-
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-------------------ALFIRKAGE- 126 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~-------------------~l~~~~~g~- 126 (484)
.++..++..|. +|++|.....+.++.+.++++|..+||++|.+|.+|.. ++|..+.+.
T Consensus 214 ~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~ 291 (489)
T PRK04172 214 EFRPYNVKAPP--PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGI 291 (489)
T ss_pred CCccceeCCCC--CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCccc
Confidence 45566665554 99999999999999999999999999999999999954 333222111
Q ss_pred -cc--------------------ccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCC
Q 011527 127 -EI--------------------RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG 185 (484)
Q Consensus 127 -~~--------------------~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~g 185 (484)
+. ..-+|.|.|+.++.++|||++|++++|+++.+. +.|+|+|++|+|||+|+++.+
T Consensus 292 ~~~~~~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~---~~p~rlFeiGrVFR~e~~d~~ 368 (489)
T PRK04172 292 GDLPEELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP---EPPQKYFSIGRVFRPDTIDAT 368 (489)
T ss_pred ccCcHHHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcC---CCCeEEEEecceEcCCCCCcc
Confidence 00 011577777788999999999999999999854 359999999999999988888
Q ss_pred CccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCC
Q 011527 186 RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (484)
Q Consensus 186 r~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~ 223 (484)
|.+||+|+++.++|.+. ..+|++.++.++++.+|+.
T Consensus 369 ~l~Ef~ql~~~i~G~~~--~f~elkg~l~~ll~~lGi~ 404 (489)
T PRK04172 369 HLPEFYQLEGIVMGEDV--SFRDLLGILKEFYKRLGFE 404 (489)
T ss_pred cCCchheEEEEEEeCCC--CHHHHHHHHHHHHHHhCCc
Confidence 99999999999999753 3678999999999999985
No 51
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.59 E-value=9.5e-15 Score=149.43 Aligned_cols=131 Identities=25% Similarity=0.378 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcc----ccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE----EIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~----~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
..++++.+++.|..+||+||.||.|...+.+.. .+. .+.+.+|.+ | +.++|||++|++++++++.+....+
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~i-d---eel~LRpsLtPsLlr~la~n~k~~~ 280 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRV-D---KNFCLRPMLAPGLYNYLRKLDRILP 280 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheee-C---CceEehhhhHHHHHHHHHhhhhccc
Confidence 688999999999999999999999988776644 332 234567775 2 4799999999999999886654457
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~ 230 (484)
.|+|+|++|+|||+|.++.++.+||+|++++++|.+...+ |+..++.++|+.||++ |++.
T Consensus 281 ~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~--dL~~lleeLL~~LGI~---f~i~ 340 (417)
T PRK09537 281 DPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRE--NLENIIDDFLKHLGID---YEII 340 (417)
T ss_pred CCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHH--HHHHHHHHHHHHCCCC---cEEe
Confidence 7999999999999998888899999999999998765444 4679999999999984 6665
No 52
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.56 E-value=3.3e-14 Score=148.15 Aligned_cols=178 Identities=22% Similarity=0.338 Sum_probs=133.9
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCC-ccccHH-----Hhhhhhcccc--ccceEEEEeC
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFP-VLESEA-----LFIRKAGEEI--RDQLYCFEDR 138 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP-~le~~~-----l~~~~~g~~~--~~~~~~~~D~ 138 (484)
.++..++..|. +...+....-...+.+.++++|...||.++.+| .+|..- ++.. ..|-. ..+.|-+.+.
T Consensus 210 ~fk~yn~~~~~--~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~P-qdHPARd~~DTFyl~~~ 286 (494)
T PTZ00326 210 EFKEYNFNALG--KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQP-QQHPARDAQDTFFLSKP 286 (494)
T ss_pred CcccceecCCC--CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCC-CCCCCCCcCceEEEcCc
Confidence 44455555543 455555666677888999999999999999876 666531 2221 11110 1334545321
Q ss_pred -------------------------------------CCCeEeeCCCChHHHHHHHHHcCCC----CC-CCeeEEEecCe
Q 011527 139 -------------------------------------GNRRVALRPELTPSLARLVIQKGKS----VS-LPLKWFAVGQC 176 (484)
Q Consensus 139 -------------------------------------~G~~l~LRpD~T~~iaR~~~~~~~~----~~-lPlk~yyig~v 176 (484)
..+.++||+++|++.+|+++++... .. .|.|+|++|+|
T Consensus 287 ~~~~~~~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrV 366 (494)
T PTZ00326 287 ETSKVNDLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRV 366 (494)
T ss_pred cccccccCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCE
Confidence 1147999999999999999986321 22 39999999999
Q ss_pred eeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceE-----------------------EEeCC
Q 011527 177 WRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVG-----------------------FRISS 233 (484)
Q Consensus 177 fR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~-----------------------i~i~~ 233 (484)
||+|.+..+|.+||+|++..++|.+. ++++++.++.++|+++|+..-.|. |+|++
T Consensus 367 fR~d~~DatH~~eFhQ~Eg~vi~~~~--s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg 444 (494)
T PTZ00326 367 FRNETLDATHLAEFHQVEGFVIDRNL--TLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGN 444 (494)
T ss_pred ecCCCCCCCcCceeEEEEEEEEeCCC--CHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeC
Confidence 99999999999999999999999875 678999999999999998532355 89999
Q ss_pred HHHHH-HHHHhCCCCch
Q 011527 234 RKVLQ-EVLRCHSIPEH 249 (484)
Q Consensus 234 ~~il~-~~l~~~g~~~~ 249 (484)
.++++ .+|+.+|++++
T Consensus 445 ~Gm~rpevL~~~Gi~~~ 461 (494)
T PTZ00326 445 SGIFRPEMLRPMGFPED 461 (494)
T ss_pred cCccCHHHHHhcCCCCc
Confidence 99999 99999999764
No 53
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.55 E-value=1.8e-14 Score=119.07 Aligned_cols=84 Identities=29% Similarity=0.391 Sum_probs=80.5
Q ss_pred cEEEEEcCc---chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCcee
Q 011527 400 ENIVCALDH---NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQY 476 (484)
Q Consensus 400 ~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~ 476 (484)
||+|++++. +...+|.++++.||++|++|++++.+.++++++++|++.|+||++++|++|.++|+|+||++.++++.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~ 80 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQE 80 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEE
Confidence 689999998 78899999999999999999999988899999999999999999999999999999999999999999
Q ss_pred eeccCcC
Q 011527 477 EIKLDEL 483 (484)
Q Consensus 477 ~v~~~el 483 (484)
+|+++++
T Consensus 81 ~v~~~el 87 (94)
T PF03129_consen 81 TVSLEEL 87 (94)
T ss_dssp EEECCHH
T ss_pred EEEHHHH
Confidence 9999986
No 54
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.54 E-value=3.8e-14 Score=122.89 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=86.2
Q ss_pred CCCCCCCccEEEEEcC--cchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEE
Q 011527 392 LPPLNHQVENIVCALD--HNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKI 469 (484)
Q Consensus 392 ~p~~~~~~~v~Vi~~~--~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~ 469 (484)
||.|.+|.+|+|++.+ ++...+++++++.||++|++|++++. .++++++++|++.|+++++++|++|.++++|+||+
T Consensus 20 ~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~ 98 (121)
T cd00858 20 LPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRE 98 (121)
T ss_pred cCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEE
Confidence 7999999999999999 77788999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCceeeeccCcC
Q 011527 470 LSSGEQYEIKLDEL 483 (484)
Q Consensus 470 ~~~~~~~~v~~~el 483 (484)
+.++++.+++++++
T Consensus 99 l~~~~~~~v~l~~l 112 (121)
T cd00858 99 RDSMRQVRVKIEEL 112 (121)
T ss_pred CCCCceEEEEHHHH
Confidence 99999999988765
No 55
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.53 E-value=1.4e-13 Score=130.02 Aligned_cols=129 Identities=29% Similarity=0.467 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCee
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk 169 (484)
++++++.+++.+..+||+||.||.|++.+.+.. .|.. .+.+..+.+.+++..+|||++|+++++.++.+. ...|.|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~--~~~~~~ 77 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE-PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI--RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc-HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc--ccCCEE
Confidence 678899999999999999999999999877653 3332 234555666788999999999999999998876 468999
Q ss_pred EEEecCeeeeCcCCC--CCccceEEeEEEEEcCCChh--hHHHHHHHHHHHHHHcCC
Q 011527 170 WFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGI 222 (484)
Q Consensus 170 ~yyig~vfR~e~~~~--gr~rEf~Q~g~eiig~~~~~--adaEvi~l~~~~l~~lgl 222 (484)
+|++|+|||.+.... .|.+||+|.+++++|.+... ...+++.++.++++.+|+
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCC
Confidence 999999999986544 57899999999999976532 457899999999999997
No 56
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.53 E-value=1.4e-13 Score=143.33 Aligned_cols=145 Identities=19% Similarity=0.282 Sum_probs=122.9
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
...|++-|+|.++++++.|.+.+.+.+.++||++|.||.|-+.++|.. +|++ +.++||.+.| +.++|+|....+
T Consensus 161 ~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~-~G~~~~f~~~~y~i~~---~~~~L~pTsE~~ 236 (418)
T TIGR00414 161 TGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDG-TGQLPKFEEDIFKLED---TDLYLIPTAEVP 236 (418)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCccccccccceEecC---CCEEEEeCCcHH
Confidence 346688899999999999999999999999999999999999999876 6765 5689999853 568999999999
Q ss_pred HHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCChh-hH-HHHHHHHHHHHHHcCC
Q 011527 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGI 222 (484)
Q Consensus 153 iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~~-ad-aEvi~l~~~~l~~lgl 222 (484)
++-+++.... +.+||+|+|++++|||+|... +| |.|||++.++.+|+.++.. .+ .+++.++.++++.|||
T Consensus 237 ~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lgl 316 (418)
T TIGR00414 237 LTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELEL 316 (418)
T ss_pred HHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998887654 468999999999999999532 24 9999999999999876432 22 2488999999999999
Q ss_pred C
Q 011527 223 T 223 (484)
Q Consensus 223 ~ 223 (484)
+
T Consensus 317 p 317 (418)
T TIGR00414 317 P 317 (418)
T ss_pred c
Confidence 6
No 57
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.51 E-value=6.1e-14 Score=115.69 Aligned_cols=86 Identities=26% Similarity=0.315 Sum_probs=80.3
Q ss_pred CccEEEEEcCc---chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCc
Q 011527 398 QVENIVCALDH---NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGE 474 (484)
Q Consensus 398 ~~~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~ 474 (484)
|.+|.|+|+.. +...++.++++.||++|++|++++...++++++++|++.|+++++++|++|+++++|+||++.+++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCc
Confidence 57899999987 567899999999999999999998888999999999999999999999999999999999999999
Q ss_pred eeeeccCcC
Q 011527 475 QYEIKLDEL 483 (484)
Q Consensus 475 ~~~v~~~el 483 (484)
+..++++++
T Consensus 81 ~~~~~~~~~ 89 (94)
T cd00861 81 KEEISIDEL 89 (94)
T ss_pred ceEEeHHHH
Confidence 999988775
No 58
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.48 E-value=3.6e-13 Score=140.62 Aligned_cols=147 Identities=22% Similarity=0.296 Sum_probs=125.3
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHH-HcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~-~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
...|++-|.|.++++.+.|.+.+.+... ++||++|.||.|.+.++|.. +|+. +.++||++. +..++|+|....
T Consensus 158 ~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~-~G~~~~f~~~ly~i~---~~~~~L~pTsE~ 233 (425)
T PRK05431 158 SGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYG-TGQLPKFEEDLYKIE---DDDLYLIPTAEV 233 (425)
T ss_pred CCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhh-cCccccchhhceEec---CCCEEEEeCCcH
Confidence 4567899999999999999999988887 99999999999999999876 5775 578899984 468999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCChhhHH---HHHHHHHHHHHHc
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRI 220 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~l 220 (484)
+++.+++.... +.+||+|+|++++|||+|... .| |.|||++.+.++|+.++ .++. +++.++.++++.|
T Consensus 234 ~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e-~s~~~~~~~l~~~~~i~~~L 312 (425)
T PRK05431 234 PLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPE-DSYAELEELTANAEEILQKL 312 (425)
T ss_pred HHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHH-HHHHHHHHHHHHHHHHHHHc
Confidence 99998887654 568999999999999999532 44 89999999999999873 3333 4889999999999
Q ss_pred CCCCCceEE
Q 011527 221 GITASDVGF 229 (484)
Q Consensus 221 gl~~~~~~i 229 (484)
|++ |.+
T Consensus 313 glp---yr~ 318 (425)
T PRK05431 313 ELP---YRV 318 (425)
T ss_pred CCc---EEE
Confidence 995 555
No 59
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.47 E-value=2.1e-13 Score=111.60 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=80.6
Q ss_pred CccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceee
Q 011527 398 QVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYE 477 (484)
Q Consensus 398 ~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~ 477 (484)
|.+|+|++.+++...+|+++++.||+.|++|++++...++++++++|++.|+++++++|++|..+++++++++.++++..
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 56889999988888999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred eccCcC
Q 011527 478 IKLDEL 483 (484)
Q Consensus 478 v~~~el 483 (484)
++++++
T Consensus 81 ~~~~~~ 86 (91)
T cd00860 81 MSLDEF 86 (91)
T ss_pred EcHHHH
Confidence 987765
No 60
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.46 E-value=2.5e-13 Score=128.11 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=86.3
Q ss_pred CCCCCCCccEEEEEcCcc------hHHHHHHHHHHHHHCCCeEEEEeCCC-CHHHHHHHHHHcCCCEEEEEcCCccccCe
Q 011527 392 LPPLNHQVENIVCALDHN------LQGAASMVATTLRGKGQSVDLVLESK-PLKWVFKRAARINAQRLILVGTTEWQKGM 464 (484)
Q Consensus 392 ~p~~~~~~~v~Vi~~~~~------~~~~a~~la~~Lr~~Gi~v~~~~~~~-~~~~~~~~a~~~gi~~~iiig~~e~~~~~ 464 (484)
+|++.+|.+|+|+++++. ..+++.++++.||++|++|++++++. ++++++++|++.|+|++|+||++|+++|+
T Consensus 4 lP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g~ 83 (202)
T cd00862 4 LPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEKNT 83 (202)
T ss_pred CChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhhCCE
Confidence 688899999999999754 67899999999999999999999887 99999999999999999999999999999
Q ss_pred EEEEECCCCceeeeccCcC
Q 011527 465 VGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 465 v~vk~~~~~~~~~v~~~el 483 (484)
|+|+++.++++..++++++
T Consensus 84 V~v~~Rd~~ek~~v~~~el 102 (202)
T cd00862 84 VVIVRRDTGEKKTVPLAEL 102 (202)
T ss_pred EEEEEecCCcceEEEHHHH
Confidence 9999999999999998875
No 61
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.44 E-value=5e-13 Score=134.20 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=95.9
Q ss_pred chHHHHHHHHH------HcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCC
Q 011527 377 FGDAVILELLK------EKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQ 450 (484)
Q Consensus 377 igierl~~~l~------e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~ 450 (484)
+.++|++..+. +.+.+|+|.+|.+|+|++++++...+++++++.||++|++|++++.+.++++++++|++.|++
T Consensus 247 ~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~GaP 326 (387)
T PRK14938 247 VDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIP 326 (387)
T ss_pred EEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 35667665532 246789999999999999998888899999999999999999998888999999999999999
Q ss_pred EEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 451 RLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 451 ~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|+||++|+++|+|+||++.+++|..++++++
T Consensus 327 fvIIIGedEle~gtVtIKdrdTgEQ~~IsLdEL 359 (387)
T PRK14938 327 FVIIIGEREVKTSTLTVKIRANNEQKSMTVEEL 359 (387)
T ss_pred EEEEECchhhhCCeEEEEECCCCceEEEeHHHH
Confidence 999999999999999999999999999988775
No 62
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.42 E-value=5.6e-12 Score=126.39 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe-CCCCeEeeC--CCChHHHHHHHHHcCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGK 162 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D-~~G~~l~LR--pD~T~~iaR~~~~~~~ 162 (484)
-.+++..|.+.+++.|.++||.||.||+|+......... .....+ |.+.| ..|+.+.|| |+++ +.|.++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~-~~f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~-- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHL-VPFETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccC-Cceeee-eccccccCCcceEEecCHHHH--HHHHhhcc--
Confidence 467899999999999999999999999998765321100 001111 44445 568999999 9988 67766643
Q ss_pred CCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 163 ~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
.-|+||+|+|||+|..+.+|..||+|+++|..+.+
T Consensus 78 ----~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d 112 (306)
T PRK09350 78 ----SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYD 112 (306)
T ss_pred ----ccceEEecceeecCCCCCCCCcHHHhhhhhhhCCC
Confidence 23999999999999888889999999999988764
No 63
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.38 E-value=2.5e-12 Score=105.70 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=79.9
Q ss_pred CccEEEEEcCc---chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCc
Q 011527 398 QVENIVCALDH---NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGE 474 (484)
Q Consensus 398 ~~~v~Vi~~~~---~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~ 474 (484)
|.+++|++.++ .....++++++.||+.|++|++++...++++++++|++.|+++++++|++|+.++++++|++.+++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~ 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCc
Confidence 46789999887 778899999999999999999988778999999999999999999999999999999999999999
Q ss_pred eeeeccCcC
Q 011527 475 QYEIKLDEL 483 (484)
Q Consensus 475 ~~~v~~~el 483 (484)
+..++++++
T Consensus 81 ~~~~~~~~~ 89 (94)
T cd00738 81 SETLHVDEL 89 (94)
T ss_pred eeEEEHHHH
Confidence 999988765
No 64
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=8.1e-12 Score=125.99 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=95.3
Q ss_pred ecccchHHHHHHHHHHcC------------CCCCCCCCccEEEEEcCc--chHHHHHHHHHHHHHCCCeEEEEeCCCCHH
Q 011527 373 CGFGFGDAVILELLKEKG------------LLPPLNHQVENIVCALDH--NLQGAASMVATTLRGKGQSVDLVLESKPLK 438 (484)
Q Consensus 373 vGfsigierl~~~l~e~~------------~~p~~~~~~~v~Vi~~~~--~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~ 438 (484)
+--|+|+-||+..|.|+. .+|+..+|+++.|.+++. +..+.+..+.+.|+++||.+.+++.+.+++
T Consensus 460 IEPSfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~~SIG 539 (599)
T KOG2298|consen 460 IEPSFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSSSSIG 539 (599)
T ss_pred ccccchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecCCCCcHh
Confidence 345667779988887642 247778999999999985 467889999999999999999999899999
Q ss_pred HHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 439 WVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 439 ~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+.+..+++.|+||-|.|..+.+++++|++|++++-.|.-++++++
T Consensus 540 rrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~ 584 (599)
T KOG2298|consen 540 RRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKL 584 (599)
T ss_pred hhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHH
Confidence 999999999999999999999999999999999888877766654
No 65
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.33 E-value=6e-12 Score=132.60 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=129.1
Q ss_pred cccccccCCCccccCChHhHHHHHHHHHHHHHH-HHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeC------
Q 011527 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEV-SRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR------ 138 (484)
Q Consensus 68 ~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~-f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~------ 138 (484)
..+++.-..+|++-|.|.++++++.+++.+++. .+++||+++.+|.|-+.++|.. +|+. +.++||.+...
T Consensus 204 ~glldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F~e~my~V~~~~~d~e~ 282 (517)
T PRK00960 204 LGWVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGLPEGMYYVCPPKRDPEY 282 (517)
T ss_pred CCCccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCChhhceEeecccccccc
Confidence 335555568999999999999999999999875 7888999999999999999987 5765 67889987421
Q ss_pred -----------------------CCCeEeeCCCChHHHHHHHHHcCC-CCCCCeeEEE-ecCeeeeCcC-CCC--Cccce
Q 011527 139 -----------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREH 190 (484)
Q Consensus 139 -----------------------~G~~l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yy-ig~vfR~e~~-~~g--r~rEf 190 (484)
....++|||..|+++.-+++.... +.+||+|++. .|+|||+|.. ..| |.+||
T Consensus 283 ~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF 362 (517)
T PRK00960 283 FEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEF 362 (517)
T ss_pred ccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCccccee
Confidence 134679999999999988876544 4678999998 7799999941 233 99999
Q ss_pred EEeEEEEEcCCCh-hhHH-HHHHHHHHHHHHcCCCCCceEEEeCCHHH
Q 011527 191 YQWNMDIIGVPAV-TAEA-ELISSIITFFKRIGITASDVGFRISSRKV 236 (484)
Q Consensus 191 ~Q~g~eiig~~~~-~ada-Evi~l~~~~l~~lgl~~~~~~i~i~~~~i 236 (484)
+|..+.+||.++. ..+. +++..+..+++.|||+ +...+.+-.+
T Consensus 363 ~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp---~~r~v~~DPF 407 (517)
T PRK00960 363 HRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLE---YWREVGDDPF 407 (517)
T ss_pred EEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC---ceEEeccccc
Confidence 9999999998653 2222 3678888999999995 3344444333
No 66
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.31 E-value=9.9e-12 Score=108.51 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=84.5
Q ss_pred CCCCCCCCccEEEEEcC---cchHHHHHHHHHHHHHCCCeEEEEeCCC---CHHHHHHHHHHcCCCEEEEEcCCccccCe
Q 011527 391 LLPPLNHQVENIVCALD---HNLQGAASMVATTLRGKGQSVDLVLESK---PLKWVFKRAARINAQRLILVGTTEWQKGM 464 (484)
Q Consensus 391 ~~p~~~~~~~v~Vi~~~---~~~~~~a~~la~~Lr~~Gi~v~~~~~~~---~~~~~~~~a~~~gi~~~iiig~~e~~~~~ 464 (484)
.||+..+|++|.|+++. ++..+.+.++++.|+++|++|.++.+.. ++++++++++.+|+|+.|+||++.+++|+
T Consensus 20 ~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG~~~l~~g~ 99 (128)
T cd02426 20 KLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLENGL 99 (128)
T ss_pred ECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEECCCcccCCE
Confidence 37889999999999994 2467889999999999999998887665 89999999999999999999999999999
Q ss_pred EEEEECCCCceeeeccCcC
Q 011527 465 VGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 465 v~vk~~~~~~~~~v~~~el 483 (484)
|+++++.|+++..|+++++
T Consensus 100 vei~~Rdt~~k~~v~~~~l 118 (128)
T cd02426 100 LQLRSRDTTLKETIHISDL 118 (128)
T ss_pred EEEEECCCCceEEEeHHHH
Confidence 9999999999999998875
No 67
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=99.17 E-value=7.8e-11 Score=115.50 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=79.4
Q ss_pred CCCCccEEEEEcCcchH-HHHHHHHHHHHHCCCeEEEEeCC-CCHHHHHHHHHHcCCCEEEEEcCCc------cccCeEE
Q 011527 395 LNHQVENIVCALDHNLQ-GAASMVATTLRGKGQSVDLVLES-KPLKWVFKRAARINAQRLILVGTTE------WQKGMVG 466 (484)
Q Consensus 395 ~~~~~~v~Vi~~~~~~~-~~a~~la~~Lr~~Gi~v~~~~~~-~~~~~~~~~a~~~gi~~~iiig~~e------~~~~~v~ 466 (484)
.+.+|||+|++++...+ ..+++|++.||++||+||+.++. .++++...+|+..||+|+|||.+++ -..+.|+
T Consensus 2 ~~~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lK 81 (273)
T PF12745_consen 2 KPSRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLK 81 (273)
T ss_pred CCCcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceE
Confidence 35689999999998865 89999999999999999997665 4999999999999999999999865 2335699
Q ss_pred EEECCCCceeeeccCcCC
Q 011527 467 VKILSSGEQYEIKLDELE 484 (484)
Q Consensus 467 vk~~~~~~~~~v~~~elv 484 (484)
||++.++++.+|+.+|||
T Consensus 82 VK~l~~~~e~dv~~~eLv 99 (273)
T PF12745_consen 82 VKSLEKKKETDVDRDELV 99 (273)
T ss_pred EeccCCCcccccCHHHHH
Confidence 999999999999998875
No 68
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.7e-10 Score=115.24 Aligned_cols=310 Identities=22% Similarity=0.309 Sum_probs=201.2
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcc--ccccceEEEEeCCC-----C
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGN-----R 141 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~--~~~~~~~~~~D~~G-----~ 141 (484)
.|+++.-.+|++-+-|-.+.+|+.|...|...+++.|-+....|+|-+...+.....| .+..++--+ .+.| +
T Consensus 80 emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwV-Tr~G~seLee 158 (551)
T KOG4163|consen 80 EMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWV-TRAGNSELEE 158 (551)
T ss_pred hhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEE-EecCCccccc
Confidence 6889999999999999999999999999999999999999999999998877553333 133444333 3444 5
Q ss_pred eEeeCCCCh----HHHHHHHHHcCCCCCCCeeEEEecCeeeeC--cCC-CCCccceE-EeEEEEEcCCChhhHHHHH---
Q 011527 142 RVALRPELT----PSLARLVIQKGKSVSLPLKWFAVGQCWRYE--RMT-RGRRREHY-QWNMDIIGVPAVTAEAELI--- 210 (484)
Q Consensus 142 ~l~LRpD~T----~~iaR~~~~~~~~~~lPlk~yyig~vfR~e--~~~-~gr~rEf~-Q~g~eiig~~~~~adaEvi--- 210 (484)
.+++||... +.++.++-+ +++||+|+-|.-+|-|.| .|+ +-|.|||. |-|--.+-.. .+||.|++
T Consensus 159 piaiRPTSETvmyp~yakWi~S---hRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~-~eA~eEvlqiL 234 (551)
T KOG4163|consen 159 PIAIRPTSETVMYPYYAKWIQS---HRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATP-EEAEEEVLQIL 234 (551)
T ss_pred ceeeccCccceecHHHHHHHHh---hccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCH-hHHHHHHHHHH
Confidence 699999543 455554433 347899999999999998 244 35999994 8887777533 45666755
Q ss_pred HHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 011527 211 SSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVL 290 (484)
Q Consensus 211 ~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~ 290 (484)
.++..+...| +.+|.-. ..++ +
T Consensus 235 dlYa~vy~el-----------------------lAiPVvk-----------GrKs------e------------------ 256 (551)
T KOG4163|consen 235 DLYARVYEEL-----------------------LAIPVVK-----------GRKS------E------------------ 256 (551)
T ss_pred HHHHHHHHhh-----------------------hcccccc-----------Cccc------h------------------
Confidence 3333333332 1111100 0000 0
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhc----C
Q 011527 291 SIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTF----G 366 (484)
Q Consensus 291 ~~~~~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f----~ 366 (484)
.+++. |-+| | +..|+|.+. ..+.|- |+--.+|=.+| +
T Consensus 257 ----------------------~EkFa-------------Ggd~-T-ttvEa~i~~-~GrgiQ-gaTSH~LGQNFSkmF~ 297 (551)
T KOG4163|consen 257 ----------------------KEKFA-------------GGDY-T-TTVEAFIPC-SGRGIQ-GATSHHLGQNFSKMFE 297 (551)
T ss_pred ----------------------hhhcc-------------CCcc-e-EEEeeeecc-cccccc-ccchhhhhHHHHHhhc
Confidence 00000 1111 1 123344321 111121 11111111111 1
Q ss_pred ----CC----C----CceecccchHHHHHHHHH-----HcC-CCCCCCCCccEEEEEcCc----------chHHHHHHHH
Q 011527 367 ----GD----D----IPACGFGFGDAVILELLK-----EKG-LLPPLNHQVENIVCALDH----------NLQGAASMVA 418 (484)
Q Consensus 367 ----~~----~----~pavGfsigierl~~~l~-----e~~-~~p~~~~~~~v~Vi~~~~----------~~~~~a~~la 418 (484)
.+ . ...-|.+ .|.+..+. ..| .+|+..+++||+|+|.+- .+..++..+.
T Consensus 298 i~~ed~~~g~~~fv~QnSWg~s---TRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~ 374 (551)
T KOG4163|consen 298 IVFEDPGEGEKEFVWQNSWGLS---TRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVE 374 (551)
T ss_pred eeecCCCccchhheeecccccc---cceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHH
Confidence 00 0 0111221 11111111 123 258888999999999862 2467889999
Q ss_pred HHHHHCCCeEEEEeCC-CCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 419 TTLRGKGQSVDLVLES-KPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 419 ~~Lr~~Gi~v~~~~~~-~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
..|...||||+.|+++ .+.+++|++...+|+|..+-+|.++++++.|.+-.+.+++...|++++|
T Consensus 375 ~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l 440 (551)
T KOG4163|consen 375 SRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDL 440 (551)
T ss_pred HHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHH
Confidence 9999999999999885 5899999999999999999999999999999998899999999998775
No 69
>PLN02678 seryl-tRNA synthetase
Probab=99.16 E-value=2.3e-10 Score=119.30 Aligned_cols=147 Identities=15% Similarity=0.219 Sum_probs=110.1
Q ss_pred cccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHHHHHH
Q 011527 79 TRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARL 156 (484)
Q Consensus 79 ~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~iaR~ 156 (484)
++-+.+.++++.+.|.+.+.+...++||++|.||.|-..++|.. +|++ +.++||.+.+.+...+.+++ ..++++-+
T Consensus 166 ~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~-sG~~~~f~e~my~i~~~~~~~yLi~T-aE~~l~~~ 243 (448)
T PLN02678 166 GYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAK-CAQLAQFDEELYKVTGEGDDKYLIAT-SEQPLCAY 243 (448)
T ss_pred eEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhh-cCCcccchhcCceecCCCCceeeecc-cccccChH
Confidence 34344489999999999999999999999999999999999876 6775 67899999544334455553 22333333
Q ss_pred HHHcCC-CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCCh---hhH-HHHHHHHHHHHHHcCCCC
Q 011527 157 VIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV---TAE-AELISSIITFFKRIGITA 224 (484)
Q Consensus 157 ~~~~~~-~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~---~ad-aEvi~l~~~~l~~lgl~~ 224 (484)
++.... +.+||+|++.+++|||+|... .| |.++|+|...-.|..++. ..+ .|++..+.++++.|||.
T Consensus 244 h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lp- 322 (448)
T PLN02678 244 HRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIP- 322 (448)
T ss_pred HhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCC-
Confidence 333222 457899999999999999743 23 889999999988876542 222 35899999999999995
Q ss_pred CceEEE
Q 011527 225 SDVGFR 230 (484)
Q Consensus 225 ~~~~i~ 230 (484)
|.+.
T Consensus 323 --yrvv 326 (448)
T PLN02678 323 --YQVV 326 (448)
T ss_pred --eEEE
Confidence 7663
No 70
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.16 E-value=1.7e-10 Score=93.50 Aligned_cols=85 Identities=34% Similarity=0.431 Sum_probs=77.4
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeee
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEI 478 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v 478 (484)
.+|+|++.++....+|++++..||+.|++|+++....++++++++|.+.|+++++++|+++..+++++++++.++++..+
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 81 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETV 81 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEE
Confidence 37899998887788999999999999999999877778999999999999999999999888889999999999999888
Q ss_pred ccCcC
Q 011527 479 KLDEL 483 (484)
Q Consensus 479 ~~~el 483 (484)
+++++
T Consensus 82 ~~~~~ 86 (91)
T cd00859 82 ALDEL 86 (91)
T ss_pred eHHHH
Confidence 87664
No 71
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.11 E-value=1.1e-09 Score=114.24 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=126.6
Q ss_pred ccccCCCccccCChHhHHHHHHHHHHHH-HHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeC---------
Q 011527 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQ-EVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------- 138 (484)
Q Consensus 71 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~-~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~--------- 138 (484)
++.-..+|++-|.|.++++++.|.+.+. ..++++||+++.+|.|-+.+.+.. .|+. +..+||.+...
T Consensus 207 idk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k-~ghl~gF~~e~y~Vt~~~~d~d~~~~ 285 (520)
T TIGR00415 207 VKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNK-MRYLEGLPEGMYYCCAPKRDPELFEE 285 (520)
T ss_pred eeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcc-cCCCCCCchhheEEecCCCCcchhhc
Confidence 3445779999999999999999999995 577889999999999999998876 3553 56788876311
Q ss_pred --------------------CCCeEeeCCCChHHHHHHHHHcCC-CCCCCeeEEE-ecCeeeeCcC-CCC--CccceEEe
Q 011527 139 --------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQW 193 (484)
Q Consensus 139 --------------------~G~~l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yy-ig~vfR~e~~-~~g--r~rEf~Q~ 193 (484)
....++|+|-.+.++.-+++.... ..++|+|+++ .++|||+|.. .+| |.+||.+.
T Consensus 286 f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kv 365 (520)
T TIGR00415 286 FKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRV 365 (520)
T ss_pred cccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEE
Confidence 223789999999999988886653 4578999999 6689999952 344 89999998
Q ss_pred EEEEEcCCChh-hH-HHHHHHHHHHHHHcCCCCCceEEEeCCHH
Q 011527 194 NMDIIGVPAVT-AE-AELISSIITFFKRIGITASDVGFRISSRK 235 (484)
Q Consensus 194 g~eiig~~~~~-ad-aEvi~l~~~~l~~lgl~~~~~~i~i~~~~ 235 (484)
-...+|.+... .. .+.+..+.++++.|+|+ |.+..++-.
T Consensus 366 E~v~~~tpEea~e~~e~mle~~~~~l~~L~Lp---yrv~~adDP 406 (520)
T TIGR00415 366 ECVWIAEPEETEEIRDKTLELAEDAADELDLE---WWTEVGDDP 406 (520)
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC---eEEeecCCc
Confidence 88888876432 22 24789999999999995 777765533
No 72
>PLN02320 seryl-tRNA synthetase
Probab=99.07 E-value=5.5e-10 Score=117.21 Aligned_cols=151 Identities=19% Similarity=0.268 Sum_probs=112.4
Q ss_pred Ccccc-CChHhHH-HHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcccc--cc-ceEEEEeCCCCeEeeCCCChH
Q 011527 77 KGTRD-FPPEDMR-LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI--RD-QLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 77 ~G~~d-~lP~~~~-~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~--~~-~~~~~~D~~G~~l~LRpD~T~ 151 (484)
.|.+. |+|.+.. +...|.+.+.+...++||++|.||.|...++|.. +|+.. .+ .+|++ +++.++|-|-.-.
T Consensus 221 sG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~-sG~~p~~e~~~~y~i---e~ed~~Li~TaE~ 296 (502)
T PLN02320 221 SGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK-CGFQPRGDNTQVYSI---DGSDQCLIGTAEI 296 (502)
T ss_pred CCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHh-cCCCcccccCceeEE---CCCceEEeecccc
Confidence 48888 5888666 4479999999999999999999999999999976 67642 23 66766 3567888554333
Q ss_pred HHHHHHHHcC-CCCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCCh-hhH-HHHHHHHHHHHHHcC
Q 011527 152 SLARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV-TAE-AELISSIITFFKRIG 221 (484)
Q Consensus 152 ~iaR~~~~~~-~~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~-~ad-aEvi~l~~~~l~~lg 221 (484)
|++-.+.... .+.+||+|++.+|+|||+|... +| |.++|.|....+|+.++. ..+ .+++..+.++++.||
T Consensus 297 Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~Lg 376 (502)
T PLN02320 297 PVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLG 376 (502)
T ss_pred cccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4333333322 2467899999999999999652 24 899999999999998643 233 348999999999999
Q ss_pred CCCCceEEEeCC
Q 011527 222 ITASDVGFRISS 233 (484)
Q Consensus 222 l~~~~~~i~i~~ 233 (484)
|. ...+.+..
T Consensus 377 Lp--yrvv~l~t 386 (502)
T PLN02320 377 LH--FKTLDMAT 386 (502)
T ss_pred CC--eEEEEecC
Confidence 96 34455544
No 73
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.95 E-value=5.9e-08 Score=98.18 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 85 ~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
.-.+++..|.+.+++.|.++||.+|.||+|+.... + -..+.|++ +--|+.+.|+.-.....=+.++.
T Consensus 22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~------e-~~~~~f~~-~~~~~~~yL~~Spql~lk~l~~~----- 88 (322)
T cd00776 22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT------E-GGAELFKV-SYFGKPAYLAQSPQLYKEMLIAA----- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC------C-ccCCcccc-ccCCCcceecCCHHHHHHHHHHh-----
Confidence 34589999999999999999999999999997431 1 12234543 33467777776544444444432
Q ss_pred CCCeeEEEecCeeeeCcCCC-CCccceEEeEEEEEcCCC
Q 011527 165 SLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVPA 202 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~-gr~rEf~Q~g~eiig~~~ 202 (484)
--|+|+||+|||.|.... -+..||+|+++|..+.++
T Consensus 89 --~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~ 125 (322)
T cd00776 89 --LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIED 125 (322)
T ss_pred --hhhhEEeccccccCCCCcCCCcceeeccceeeeccCC
Confidence 238899999999997554 367999999999998743
No 74
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.91 E-value=8.4e-09 Score=101.59 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe-CCCCeEeeC--CCChHHHHHHHHHcCCCC
Q 011527 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGKSV 164 (484)
Q Consensus 88 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D-~~G~~l~LR--pD~T~~iaR~~~~~~~~~ 164 (484)
+++..+.+.+++.|.++||.||.||+|+... .|. ..+.|.+.. ..|+.+.|+ |+++ ..+.++...
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~~--~~~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~~--- 69 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GGA--GARPFLVKYNALGLDYYLRISPQLF--KKRLMVGGL--- 69 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Ccc--ccceEEeeecCCCCcEEeecCHHHH--HHHHHhcCC---
Confidence 5788999999999999999999999998642 222 235676632 258999999 7776 444444321
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
-|+|++|+|||+|..+.+|.+||+|+++|....+
T Consensus 70 ---~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~~ 103 (269)
T cd00669 70 ---DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFAD 103 (269)
T ss_pred ---CcEEEEecceeCCCCCCCcccceeEEEEEEecCC
Confidence 2999999999999888899999999999988653
No 75
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.84 E-value=1.4e-07 Score=94.63 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE--e--CCCCeEeeCCCChHHHHHHHHHcCCC
Q 011527 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--D--RGNRRVALRPELTPSLARLVIQKGKS 163 (484)
Q Consensus 88 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~--D--~~G~~l~LRpD~T~~iaR~~~~~~~~ 163 (484)
++|.+|.+.+++.|.++||.+|.||+|+.... ++ ...+.|++. + ..++...|+----...=|.++..
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~-----~e-~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g--- 72 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV-----TD-PHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG--- 72 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC-----CC-cCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc---
Confidence 57899999999999999999999999997521 11 123445432 1 12345555544333333344432
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|++|+|||+|....-+.-||+|+++|..+.+
T Consensus 73 ---~~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~d 107 (304)
T TIGR00462 73 ---SGPIFQICKVFRNGERGRRHNPEFTMLEWYRPGFD 107 (304)
T ss_pred ---CCCEEEEcCceeCCCCCCCcccHHHhHHHHHHcCC
Confidence 24899999999999876557899999999877653
No 76
>PLN02850 aspartate-tRNA ligase
Probab=98.84 E-value=3.1e-07 Score=98.45 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.+++..|.+.+++.|...||.||.||+|..... . | ..+.|++ +-.|+.+.|+--.....=+.++..
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e--g---ga~~F~v-~yf~~~~~L~qSpql~kq~li~~g------ 290 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS--E--G---GSAVFRL-DYKGQPACLAQSPQLHKQMAICGD------ 290 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC--c--c---ccceeee-ccCCcceecCCCHHHHHHHHHHhc------
Confidence 478899999999999999999999999954321 1 1 2345665 446788888765433333333322
Q ss_pred CeeEEEecCeeeeCcCCCC-CccceEEeEEE-EEcC
Q 011527 167 PLKWFAVGQCWRYERMTRG-RRREHYQWNMD-IIGV 200 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~g-r~rEf~Q~g~e-iig~ 200 (484)
--|+|+||+|||.|..... +.-||+|+++| -|+.
T Consensus 291 ~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~ 326 (530)
T PLN02850 291 FRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKE 326 (530)
T ss_pred CCceEEEecccccCCCCCCccchhhccchhhhhhhc
Confidence 2389999999999975333 45899999999 4653
No 77
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.81 E-value=6.7e-07 Score=96.41 Aligned_cols=102 Identities=21% Similarity=0.343 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe--CCCCeEeeCCCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D--~~G~~l~LRpD~T~~iaR~~~~~~~~ 163 (484)
-.++|..|...+|+.|...||.||+||+|..... .|. .+ |.+-. ..|..++|+----...=+.++..
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~----eGa--r~--f~vp~~~~~~~~y~L~qSpQlykq~l~v~G--- 205 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP----EGA--RD--YLVPSRVHKGEFYALPQSPQLFKQLLMVSG--- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC----CCC--cc--eeeeeecCCCceeecCCCHHHHHHHHHhcc---
Confidence 3478999999999999999999999999986321 121 11 22211 25666777743222222222221
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|++|+|||+|.....|.-||+|+++|.-..+
T Consensus 206 ---~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d 240 (583)
T TIGR00459 206 ---VDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMT 240 (583)
T ss_pred ---cCcEEEEcceeeCCCCCCCCCcccCcceeeecCCC
Confidence 24999999999999888888999999999988765
No 78
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.81 E-value=1.9e-07 Score=94.95 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHH-hhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l-~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|..|.+.+++.|.+.||.||.||+|..... ... .|.+-.-..+.+ |-.|+.+.|+...-.. -|+++..
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g---- 101 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMG-LGSDLPVKQISI-DFYGVEYYLADSMILH-KQLALRM---- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCC-ccccCCcccccc-ccCCCceeeccCHHHH-HHHHHhh----
Confidence 4589999999999999999999999999986411 000 111100112222 3347788888765444 5555533
Q ss_pred CCCeeEEEecCeeeeCcCCC---CCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~---gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|.... -+.-||+|+.+|..+.+
T Consensus 102 --~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d 139 (335)
T PRK06462 102 --LGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD 139 (335)
T ss_pred --cCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCC
Confidence 248999999999998766 57899999999988753
No 79
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.78 E-value=1.9e-06 Score=87.90 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE----eCCCCeEeeCCCChHHHHHHHHHcC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE----DRGNRRVALRPELTPSLARLVIQKG 161 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~----D~~G~~l~LRpD~T~~iaR~~~~~~ 161 (484)
-.+++..|.+.+++.|.+.||.||.||+|..... +. ..+.|.+. +--|+.+-|+.-.-...=++++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g- 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS------SS-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc------Cc-cccccccccchhhhcccceecCcChHHHHhhhcccc-
Confidence 3578999999999999999999999999987531 11 34567764 134677778876555555555432
Q ss_pred CCCCCCeeEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCCh
Q 011527 162 KSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAV 203 (484)
Q Consensus 162 ~~~~lPlk~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~ 203 (484)
--|+|+||+|||.|.. ..-+.-||+|+++|.-+.+..
T Consensus 93 -----~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~ 130 (335)
T PF00152_consen 93 -----LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYD 130 (335)
T ss_dssp -----HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHH
T ss_pred -----chhhhheecceeccCcccccchhhhhhhhhccccCcHH
Confidence 2489999999999977 344567999999999887643
No 80
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=98.71 E-value=2.4e-06 Score=91.14 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEE-EeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~-~D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|..|...+++.|...||.||+||+|.+.. .|. ..+.|.. .+--+..+.|+----...=|.++..
T Consensus 171 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga--~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g---- 239 (491)
T PRK00484 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDIDLYLRIAPELYLKRLIVGG---- 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc--cceeeeeccccCCCceEeccCHHHHHHHHHhcc----
Confidence 347899999999999999999999999997531 221 2234432 2333555557644333333433332
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|....-|.-||+|+++|.-..+
T Consensus 240 --~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d 274 (491)
T PRK00484 240 --FERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYAD 274 (491)
T ss_pred --CCcEEEEecceecCCCCCCcCCceEEEEEEEecCC
Confidence 24899999999999877678899999999987653
No 81
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=98.66 E-value=3.4e-06 Score=90.05 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEE-EeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~-~D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|..|...+++.|...||.||.||+|.... .|. ....|.. .+.-+..+.||----...=|.++..
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~-----gGa--~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG---- 251 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVGG---- 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecC-----CCC--cccceecccccCCcceeeecCHHHHHHHHHhcc----
Confidence 357899999999999999999999999997631 222 1112211 1223455667655444444555433
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|....-|.-||+|+++|.-..+
T Consensus 252 --~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 286 (505)
T PRK12445 252 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 286 (505)
T ss_pred --CCcEEEEehhccCCCCCCCcCcccceeeeeeecCC
Confidence 24899999999999876668899999999998764
No 82
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=98.61 E-value=9.4e-06 Score=87.71 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe---CCCCeEeeCCCChHHHHHHHHHcCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED---RGNRRVALRPELTPSLARLVIQKGKS 163 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D---~~G~~l~LRpD~T~~iaR~~~~~~~~ 163 (484)
.++|..|.+.+|+.|...||.||+||+|.... .|. ....|.. .-+..+.||----...=|+++..
T Consensus 253 fr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA----~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG--- 320 (585)
T PTZ00417 253 FITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGA----NARPFITHHNDLDLDLYLRIATELPLKMLIVGG--- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccc----cceeEEecccCCCcceEEeecHHHHHHHHHHhC---
Confidence 47899999999999999999999999998742 122 2222221 22456677754445555555543
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|....-+.-||+|+.+|.-..+
T Consensus 321 ---~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~d 355 (585)
T PTZ00417 321 ---IDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYAD 355 (585)
T ss_pred ---CCCEEEEcccccCCCCCCCccceeeeeeeeeecCC
Confidence 24899999999999876667889999999987654
No 83
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=98.59 E-value=9.4e-06 Score=86.66 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|..|...+++.|...||.||.||+|.+.. .|. ..+.|... +.-+..+.||----...=|+++..
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga--~a~pF~t~~~~~~~~~yLriSpELylKrlivgG---- 239 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA--NARPFITHHNALDMDLYLRIAPELYLKRLIVGG---- 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc--cceeEEeecccCCCceEEecCHHHHHHHHHhCC----
Confidence 347899999999999999999999999997532 121 22334331 123556667655334444555432
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|....-|.-||+|+.+|.-..+
T Consensus 240 --~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 240 --FEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYAD 274 (496)
T ss_pred --CCceEEEecceecCCCCCcccchhheeehhhhcCC
Confidence 24899999999999876667899999999977653
No 84
>PLN02502 lysyl-tRNA synthetase
Probab=98.58 E-value=5.2e-06 Score=89.28 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
.++|..|...+++.|...||.||.||+|.... .|. ....|... +.-+..+.||----...=|.++..
T Consensus 229 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g----- 296 (553)
T PLN02502 229 FRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGA--AARPFVTHHNDLNMDLYLRIATELHLKRLVVGG----- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCc--cccceeeecccCCcceeeecCHHHHHHHHHHhc-----
Confidence 47899999999999999999999999997532 121 12233321 223566677655444444555442
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|....-|.-||+|+++|.-..+
T Consensus 297 -~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d 331 (553)
T PLN02502 297 -FERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYAD 331 (553)
T ss_pred -cCCEEEEcCeeeCCCCCCccccceeehhhhhhcCC
Confidence 24899999999999776667899999999987654
No 85
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.56 E-value=5.2e-07 Score=89.41 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE--eCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--DRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 88 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~--D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
++|..+.+.+++.|.+.||.||.||+|..... .|. .. |... +..+..+.|+--.-...=+.++..
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~----~g~---~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g----- 68 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP----EGA---RD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSG----- 68 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC----CCC---CC-ceeccccCCCceeecccCHHHHHHHHHhcC-----
Confidence 57889999999999999999999999975432 111 11 2221 113444445543222222223221
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+||+|+|||+|+++.+|..||+|+++|..+.+
T Consensus 69 -~~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~ 103 (280)
T cd00777 69 -FDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVD 103 (280)
T ss_pred -cCcEEEeccceeCCCCCCCccceeEEeEeeeccCC
Confidence 24899999999999999999999999999998764
No 86
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=9.1e-07 Score=91.14 Aligned_cols=150 Identities=21% Similarity=0.295 Sum_probs=120.7
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
...+++-+.+..+++-+.+.+.+.+...++||+++.+|.+-+.+.... .|.. +.+++|++.|. .+.|=|-...|
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~g-tgqlpkf~e~~y~v~~~---~~~LipTaEvp 237 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFG-TGQLPKFEEDLYKVEDP---DLYLIPTAEVP 237 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhc-cCCCCCCcccceEecCC---CEEEEecchhh
Confidence 457788888999999999999999999999999999999999988754 5554 57889999544 89999999999
Q ss_pred HHHHHHHcCCC-CCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCChh-hH-HHHHHHHHHHHHHcCC
Q 011527 153 LARLVIQKGKS-VSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGI 222 (484)
Q Consensus 153 iaR~~~~~~~~-~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~~-ad-aEvi~l~~~~l~~lgl 222 (484)
++-+++..... .++|+|++-..+|||.|.-. +| |..||...-.-.|+.++.. .+ .|++..+.++++.|+|
T Consensus 238 l~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeL 317 (429)
T COG0172 238 LTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELEL 317 (429)
T ss_pred hHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 99999876553 56899999999999998432 34 6778887776667665432 33 3589999999999999
Q ss_pred CCCceEEEe
Q 011527 223 TASDVGFRI 231 (484)
Q Consensus 223 ~~~~~~i~i 231 (484)
+ |.+..
T Consensus 318 P---yRvv~ 323 (429)
T COG0172 318 P---YRVVN 323 (429)
T ss_pred C---ceEee
Confidence 6 55443
No 87
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.53 E-value=9.9e-07 Score=88.10 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=98.0
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccH-HHhhhhhc----ccccc--ceEEEEeCCCC
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRKAG----EEIRD--QLYCFEDRGNR 141 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~-~l~~~~~g----~~~~~--~~~~~~D~~G~ 141 (484)
..+++.+|.+. ..+....-...+.+.++++|...||.|+.+|.|+.. ..+.. .+ +...+ +.+.+. .
T Consensus 55 ~~~d~tlp~~~--~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~-l~~~~~hpar~~~d~~~l~----d 127 (294)
T TIGR00468 55 ETYDVTLPGTK--IYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDA-LNIPQDHPARDMQDTFYIK----D 127 (294)
T ss_pred ccCcccCCCCC--CCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHH-hCCCCCCcchhhccceeec----C
Confidence 34566666532 222344445677888999999999999999999876 23322 21 11111 445553 4
Q ss_pred eEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcC
Q 011527 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (484)
Q Consensus 142 ~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lg 221 (484)
..+||+-+++..+|.+..|.. .|+|+|++|+|||.+.....+..||+|+++-+.+.+- .-.++..++..+++.+|
T Consensus 128 ~~vLRtsl~p~ll~~l~~N~~---~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~--~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 128 RLLLRTHTTAVQLRTMEENEK---PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNV--SFTNLKGFLEEFLKKMF 202 (294)
T ss_pred CcceecccHHHHHHHHHhcCC---CCceEEEecceEEcCCCCCccCChhhEEEEEEECCCC--CHHHHHHHHHHHHHHhC
Confidence 578999999999999998754 5999999999999875433445599999888777321 23456667777777777
Q ss_pred CC
Q 011527 222 IT 223 (484)
Q Consensus 222 l~ 223 (484)
+.
T Consensus 203 ~~ 204 (294)
T TIGR00468 203 GE 204 (294)
T ss_pred CC
Confidence 63
No 88
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.52 E-value=2.1e-06 Score=82.09 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHH-Hhhhhhcccccc------ceEEEEeCCCCeEeeCCCChHHHHHHHHHcCC
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAGEEIRD------QLYCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~-l~~~~~g~~~~~------~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~ 162 (484)
.+.+++.+++.+...||+|+.|+.|...+ .+.. .+..... ..+++.++- .-+||+.+++++.+.++.|
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N-- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL-- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc--
Confidence 35677889999999999999999998762 3321 2211110 234554443 7799999999999999987
Q ss_pred CCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcC
Q 011527 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (484)
Q Consensus 163 ~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lg 221 (484)
..|.|+|++|+|||.++....+..|+.+.++.+.|... ...++..++..+++.+|
T Consensus 78 --~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~--df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 --KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGL--TFADLKGTLEEFAKELF 132 (218)
T ss_pred --CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCC--CHHHHHHHHHHHHHHhc
Confidence 35999999999999875433444599999999999532 24456677777778887
No 89
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=98.50 E-value=1.4e-05 Score=85.97 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.+++..|...+++.|...||.||.||.|..... . . ..+.|.+ +--|+.+.|+--.-.. -++++...
T Consensus 213 ~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e-g----ga~~F~v-~yf~~~~~L~qSpql~-kq~li~~g----- 278 (550)
T PTZ00401 213 FRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS--E-G----GANVFKL-EYFNRFAYLAQSPQLY-KQMVLQGD----- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--C-c----ccccccc-ccCCCCeecCCCHHHH-HHHHHhcC-----
Confidence 578899999999999999999999999976431 1 1 2234554 3346777776653332 33333221
Q ss_pred CeeEEEecCeeeeCcCCC-CCccceEEeEEEE-EcC
Q 011527 167 PLKWFAVGQCWRYERMTR-GRRREHYQWNMDI-IGV 200 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~-gr~rEf~Q~g~ei-ig~ 200 (484)
--|+|+||+|||.|.... -+.-||+|+++|. |+.
T Consensus 279 ~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~ 314 (550)
T PTZ00401 279 VPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINE 314 (550)
T ss_pred CCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcC
Confidence 248999999999997653 3457999999985 443
No 90
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.1e-05 Score=83.21 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHH-HHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR-~~~~~~~~~ 164 (484)
-++++..|...+++.|.+.||.+|.||.+-.... +-..++|++. --++..-|--- +++-. .++..
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~-------EGg~elF~v~-yf~~~a~LtqS--~QLyke~~~~a---- 198 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT-------EGGGELFKVD-YFDKEAYLTQS--PQLYKEALAAA---- 198 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC-------CCCceeEEEe-ecCcceEEecC--HHHHHHHHHHH----
Confidence 3589999999999999999999999999987542 1134677662 22222222111 22221 11211
Q ss_pred CCCeeEEEecCeeeeCcCCCC-CccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~g-r~rEf~Q~g~eiig~~ 201 (484)
--|.|.+|++||.|....- +.-||||.++|+=..+
T Consensus 199 --l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 199 --LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred --hCceEEecCceecCCCCCcchhhhHheecceeccCc
Confidence 2489999999999976544 5799999999998765
No 91
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.48 E-value=2e-06 Score=83.51 Aligned_cols=129 Identities=19% Similarity=0.286 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCccccHH-Hhhhhhc----ccc--ccceEEEEeCC---CCeEeeCCCChHHHHHHHH
Q 011527 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAG----EEI--RDQLYCFEDRG---NRRVALRPELTPSLARLVI 158 (484)
Q Consensus 89 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~-l~~~~~g----~~~--~~~~~~~~D~~---G~~l~LRpD~T~~iaR~~~ 158 (484)
-...+.+.++++|...||+++..|.++... .|.. .+ +.. ..+.|.+.++. .+..+||+-.|+..+|.+.
T Consensus 18 p~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~-Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~ 96 (247)
T PF01409_consen 18 PITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDA-LNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLN 96 (247)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGG-GTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHh-hCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHH
Confidence 456788999999999999999999997743 3322 11 111 23456565554 5889999999999999982
Q ss_pred HcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc-CCC
Q 011527 159 QKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI-GIT 223 (484)
Q Consensus 159 ~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l-gl~ 223 (484)
...+.|+|++++|+|||.+.....+..+|+|.+.=+++.+-.. .++..++..+++.| |..
T Consensus 97 ---~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f--~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 97 ---KHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTF--EDLKGTLEELLKELFGID 157 (247)
T ss_dssp ---TTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-H--HHHHHHHHHHHHHHHTTT
T ss_pred ---HhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccch--hHHHHHHHHHHHHHhhcc
Confidence 2235699999999999999866778899999999888765322 34678888888888 863
No 92
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=98.38 E-value=2.7e-05 Score=90.22 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEE-EeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~-~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
.++|..|.+.+++.|...||.||+||+|...+ .|. ..+.|.. .+.-+..+.||----...=|.++..
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gGa--~a~pF~t~~~~~~~~~yLriSPELylKrLivgG----- 837 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH-----GGA--NARPFVTHINAYDMDLYLRIAPELYLKRLCVGG----- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CCc--ccceeEeeecCCCccchhhcChHHHHHHHHhcc-----
Confidence 47889999999999999999999999997432 121 2234532 1223444555544333333444322
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|.|+||++||+|....-|.-||+|+++|.-..+
T Consensus 838 -~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~d 872 (1094)
T PRK02983 838 -VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHAD 872 (1094)
T ss_pred -cCceEEEcceecCCCCCCCccccccchhhhhhcCC
Confidence 24899999999999876668899999999988754
No 93
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.29 E-value=1.5e-05 Score=80.11 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=100.8
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHH-Hhhhh---hcccc--ccceEEEEeCCCCeE
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK---AGEEI--RDQLYCFEDRGNRRV 143 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~-l~~~~---~g~~~--~~~~~~~~D~~G~~l 143 (484)
.+|+.+|. +.+.+....-...+.+.++++|...||+++.+|.++... .|..- .+|.. ..+.|.+ ....
T Consensus 92 ~~d~t~p~--~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~ 165 (339)
T PRK00488 92 TIDVTLPG--RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGL 165 (339)
T ss_pred cccccCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCc
Confidence 35566664 334444555677888999999999999999999998743 23221 11110 1245555 3458
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 144 ~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
+||.-.++..+|.+..+ +.|+|++.+|+|||++....-+..+|+|+..=+++.+-. -+++..++..+++.+
T Consensus 166 lLRThTSp~qir~L~~~----~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vt--f~dLK~~L~~fl~~~ 236 (339)
T PRK00488 166 LLRTHTSPVQIRTMEKQ----KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNIS--FADLKGTLEDFLKAF 236 (339)
T ss_pred eeeccCcHHHHHHHHhc----CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 99999999999998762 459999999999999876677899999999999987643 345666677777776
No 94
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.3e-05 Score=82.02 Aligned_cols=144 Identities=22% Similarity=0.331 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.+.|.++...+|+.+..+||.+|+||+|-.+.. +-..+-+..---+.|+-+||+=- +++...+..-..
T Consensus 141 l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP------EGARDfLVPSRv~~G~FYALPQS--PQlfKQLLMvsG---- 208 (585)
T COG0173 141 LKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP------EGARDFLVPSRVHPGKFYALPQS--PQLFKQLLMVAG---- 208 (585)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEeecCccccCCC------ccccccccccccCCCceeecCCC--HHHHHHHHHHhc----
Confidence 468888999999999999999999999976422 11122222222246889999865 676666555333
Q ss_pred CeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHH-HHHHHHHHHc-CCCCCceEEEeC-CHHHHHHHHHh
Q 011527 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELI-SSIITFFKRI-GITASDVGFRIS-SRKVLQEVLRC 243 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi-~l~~~~l~~l-gl~~~~~~i~i~-~~~il~~~l~~ 243 (484)
--|+|||.+|||+|..+.-|.-||+|.|+|.==.+..+ -.+++ .++..+|+.. |++ +..- -+=-++..+..
T Consensus 209 fdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ed-v~~~~E~l~~~vf~~~~~i~-----l~~pFprmtY~eAm~~ 282 (585)
T COG0173 209 FDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEED-VMELIEKLLRYVFKEVKGIE-----LKTPFPRMTYAEAMRR 282 (585)
T ss_pred ccceeeeeeeecccccccccCCcceeEeEEeecCCHHH-HHHHHHHHHHHHHHHhcCCc-----cCCCcccccHHHHHHH
Confidence 35999999999999988889999999999975433211 11222 4555555543 332 1110 12235677888
Q ss_pred CCCCc
Q 011527 244 HSIPE 248 (484)
Q Consensus 244 ~g~~~ 248 (484)
||.+.
T Consensus 283 YGSDK 287 (585)
T COG0173 283 YGSDK 287 (585)
T ss_pred hCCCC
Confidence 88664
No 95
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.15 E-value=3.1e-05 Score=78.66 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
.+++..+...+++.|...||.||.||+|.... .|. ..+.|... +..|+...|+---....=+.++..
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-----~~~--~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g----- 75 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDMDLYLRIAPELYLKRLIVGG----- 75 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC-----CCc--cceeEEeccCCCCcceeeccCHHHHHHHHHhcC-----
Confidence 57889999999999999999999999997542 111 12344332 234666667644322222333322
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||.|....-|.-||+|+++|..+.+
T Consensus 76 -~~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~ 110 (329)
T cd00775 76 -FERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYAD 110 (329)
T ss_pred -CCcEEEEeccccCCCCCCCCCCceEEEEEeeecCC
Confidence 35899999999999876667899999999988754
No 96
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=98.11 E-value=2.1e-05 Score=85.51 Aligned_cols=102 Identities=21% Similarity=0.344 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe--CCCCeEeeCCCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D--~~G~~l~LRpD~T~~iaR~~~~~~~~ 163 (484)
-.++|..+...+|+.|...||.||+||+|..... .|. .+ |..-. ..|..+.|+----...=+.++..
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~----ega--~~--f~v~~~~~~~~~~~L~qSpql~kq~l~~~g--- 208 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP----EGA--RD--YLVPSRVHPGKFYALPQSPQLFKQLLMVAG--- 208 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC----CCC--cc--ceecccccCCceeecCCCHHHHHHHHHhcc---
Confidence 3478899999999999999999999999986421 111 11 22211 24667777643222222222221
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|++|+|||+|.....|.-||+|+++|.-+.+
T Consensus 209 ---~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~ 243 (588)
T PRK00476 209 ---FDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVT 243 (588)
T ss_pred ---cCceEEEeceeecCCCCCCcCcccccceeeecCCC
Confidence 24899999999999877777779999999998875
No 97
>PLN02903 aminoacyl-tRNA ligase
Probab=98.05 E-value=3.5e-05 Score=83.87 Aligned_cols=101 Identities=22% Similarity=0.404 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHH-cCCeeecCCccccHHHhhhhhccccccceEEEEe-CCCCeEeeCCCChHHHHHH-HHHcCCC
Q 011527 87 MRLRNWLFHNFQEVSRL-FGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARL-VIQKGKS 163 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~-~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D-~~G~~l~LRpD~T~~iaR~-~~~~~~~ 163 (484)
.++|..|...+++.|.. .||.||+||+|..... .|. .+.+.... ..|..++|+-- +++..- +....
T Consensus 203 lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~----eGa---rdf~v~~~~~~g~~y~L~qS--PQlykQ~Lm~~G-- 271 (652)
T PLN02903 203 LRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP----EGA---RDYLVPSRVQPGTFYALPQS--PQLFKQMLMVSG-- 271 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC----CCC---cccEEeeecCCCcccccCCC--HHHHHHHHHhcc--
Confidence 47899999999999996 9999999999985422 111 11221111 23666677743 333222 12111
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|..+..|.-||+|+++|.-..+
T Consensus 272 ---~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 272 ---FDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 306 (652)
T ss_pred ---CCcEEEEehhhccCCCCCCcccceeeeeeeecCCC
Confidence 24899999999999888788899999999988765
No 98
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=3.6e-05 Score=78.26 Aligned_cols=146 Identities=20% Similarity=0.312 Sum_probs=107.5
Q ss_pred CCccccCC--hHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 76 PKGTRDFP--PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 76 p~G~~d~l--P~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
..|.|.|+ ...+.+-..|.+.-.+.+.+.||.++.||.+...++... .|.. ...++|..+|.. ...+|-.-.-.
T Consensus 172 vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~-cg~~~~~d~~~~y~ld~~-~~~~LiaTaE~ 249 (455)
T KOG2509|consen 172 VSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQK-CGQLPRFDEEQYYVLDGG-DEKYLIATAEQ 249 (455)
T ss_pred cccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHH-hccCcCCCcceEEeecCC-ccceeEeeccc
Confidence 45777755 456677778888888999999999999999999999865 4542 456777777764 45556555567
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCChhhH--HHHHHHHHHHHHHcC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIG 221 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lg 221 (484)
|+|-+.+..-. ..++|+|+.-...|||.|.-. +| |..||.-.-.=++..++...+ -|+|....+++++||
T Consensus 250 plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLg 329 (455)
T KOG2509|consen 250 PLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLG 329 (455)
T ss_pred hhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhC
Confidence 89988876543 357999999999999998522 24 667887655555544433222 479999999999999
Q ss_pred CC
Q 011527 222 IT 223 (484)
Q Consensus 222 l~ 223 (484)
|.
T Consensus 330 ip 331 (455)
T KOG2509|consen 330 LP 331 (455)
T ss_pred Cc
Confidence 95
No 99
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=98.00 E-value=6.4e-05 Score=79.04 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
-.+++..|.+.+++.|.+.||.||.||+|..... . | ..+.|.+ +.-|+.+.|+--.-...=+.++..
T Consensus 132 ~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~--e--g---~~~~f~v-~~~~~~~yL~~Spql~~q~li~~g----- 198 (428)
T TIGR00458 132 IFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT--E--G---GTELFPI-TYFEREAFLGQSPQLYKQQLMAAG----- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC--C--C---Ccceeee-EecCCcEEECcCHHHHHHHHHhcc-----
Confidence 4589999999999999999999999999974321 1 1 2335554 233566667755333322333321
Q ss_pred CCeeEEEecCeeeeCcCCCC-CccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~g-r~rEf~Q~g~eiig~~ 201 (484)
--|.|+||++||+|..... +.-||+|+++|..+.+
T Consensus 199 -~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 234 (428)
T TIGR00458 199 -FERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFED 234 (428)
T ss_pred -cCcEEEEecccccCCCCCccchheeeEeeeeeccCC
Confidence 2489999999999977644 5589999999988764
No 100
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.96 E-value=0.00014 Score=76.46 Aligned_cols=134 Identities=20% Similarity=0.287 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCeee-cCCccccHH-----Hhhhhhccc--cccceEEEEeC--------------------
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEV-DFPVLESEA-----LFIRKAGEE--IRDQLYCFEDR-------------------- 138 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI-~tP~le~~~-----l~~~~~g~~--~~~~~~~~~D~-------------------- 138 (484)
..-...+.+.++++|...||.++ ..|.+|..- ++.. ..|- -..+.|-+.++
T Consensus 220 ~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~P-qdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 220 LHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQP-QQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCC-CCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 34456778899999999999999 578887742 2221 1111 11345555321
Q ss_pred ---------------CCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCCh
Q 011527 139 ---------------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (484)
Q Consensus 139 ---------------~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~ 203 (484)
..+.++||.-.|+--+|++.........|.|++.+|+|||+|....-+.-||+|+..=+++.+-
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~- 377 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGL- 377 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCC-
Confidence 0157999999999999999864322235999999999999998788899999999998997653
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 011527 204 TAEAELISSIITFFKRIGIT 223 (484)
Q Consensus 204 ~adaEvi~l~~~~l~~lgl~ 223 (484)
.-..++.++.++++++|..
T Consensus 378 -t~~~L~g~l~~f~~~lg~~ 396 (492)
T PLN02853 378 -TLGDLIGVLEDFFSRLGMT 396 (492)
T ss_pred -CHHHHHHHHHHHHHHcCCc
Confidence 3335788888899988763
No 101
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00011 Score=71.02 Aligned_cols=147 Identities=15% Similarity=0.138 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
....|..|.+.||+.|...||.||+||+|...-.-.... +.+..+.+.--+.++..+-|.+---.+.=|.++...
T Consensus 15 ~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL-~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~---- 89 (322)
T COG2269 15 NLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHL-HPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGS---- 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccce-eeeeeEEeccCccccceeeeecCcHHHHHHHHHccC----
Confidence 467899999999999999999999999997642211000 001111111112235677787766677778887643
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHS 245 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g 245 (484)
-+.|++|+|||++..+.-+.-||++.--+-+|.+-...--|+=.+...+++.-+.. ++ ..-+.++.++|
T Consensus 90 --~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~~E------~l---s~~eaF~r~~g 158 (322)
T COG2269 90 --GPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVEAE------RL---SYQEAFLRYLG 158 (322)
T ss_pred --CcchhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCCcc------ee---eHHHHHHHHhC
Confidence 36899999999998776678899999999888875433334333443333333321 11 13345566677
Q ss_pred CCc
Q 011527 246 IPE 248 (484)
Q Consensus 246 ~~~ 248 (484)
++.
T Consensus 159 id~ 161 (322)
T COG2269 159 IDP 161 (322)
T ss_pred CCc
Confidence 664
No 102
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.95 E-value=8.1e-05 Score=78.55 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
-.++|..|...+++.|.+.||.||+||+|..... -| ..+.|.+ +--|+.+.|+--.-.. .+.++...
T Consensus 135 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg---~~~~f~~-~~~~~~~~L~~Spql~-~q~l~~~g---- 201 (437)
T PRK05159 135 IFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT----EG---GAELFPI-DYFEKEAYLAQSPQLY-KQMMVGAG---- 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC----CC---CcceEeE-EecCCceEecCCHHHH-HHHHHhcC----
Confidence 4589999999999999999999999999954211 11 2335655 3356777787664443 23333221
Q ss_pred CCeeEEEecCeeeeCcCCCC-CccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~g-r~rEf~Q~g~eiig~~ 201 (484)
--|.|+||++||+|..... +.-||+|+++|..+.+
T Consensus 202 -~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 237 (437)
T PRK05159 202 -FERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID 237 (437)
T ss_pred -CCcEEEEeceeeCCCCCCcccchhhheeeeeeeecc
Confidence 2489999999999987654 4579999999987765
No 103
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.94 E-value=6.3e-05 Score=82.69 Aligned_cols=103 Identities=21% Similarity=0.343 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHH-HHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLV-IQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~-~~~~~~~ 164 (484)
-.++|..+...+|+.|...||.||+||+|..... .|. ..-++...-..|..++|+-- +++..-. +...
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~----eGA--r~~~~p~~~~~~~~y~L~qS--PQlykq~lm~~G--- 223 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP----EGA--RDYLVPSRIHPKEFYALPQS--PQLFKQLLMIAG--- 223 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----CCC--cceEEeeecCCCcceecCCC--HHHHHHHHHhcc---
Confidence 4578999999999999999999999999986321 111 11111111124556667643 3333222 1111
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|....-|.-||+|+++|.-+.+
T Consensus 224 --~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d 258 (706)
T PRK12820 224 --FERYFQLARCFRDEDLRPNRQPEFTQLDIEASFID 258 (706)
T ss_pred --CCcEEEEechhcCCCCCCCcCccccccceeeccCC
Confidence 24999999999999877778899999999988765
No 104
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.92 E-value=7.6e-05 Score=78.99 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE--------eCCCCeEeeCCCChHHHHHHH
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--------DRGNRRVALRPELTPSLARLV 157 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~--------D~~G~~l~LRpD~T~~iaR~~ 157 (484)
-.+++..|...+++.|..+||.||.||+|..... -| ..+.|.+. +--|+.+.|+.-..... +.+
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~----eg---~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l 203 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASDC----EG---AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAY 203 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccCC----CC---CCCceEeecccccccccccCCCcccccCHHHHH-HHH
Confidence 3578999999999999999999999999986421 11 23456552 22366677766544443 444
Q ss_pred HHcCCCCCCCeeEEEecCeeeeCcCCC-CCccceEEeEEEEEcCC
Q 011527 158 IQKGKSVSLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVP 201 (484)
Q Consensus 158 ~~~~~~~~lPlk~yyig~vfR~e~~~~-gr~rEf~Q~g~eiig~~ 201 (484)
+. . --|.|+||+|||+|.... -+.-||+|+++|..+.+
T Consensus 204 ~~-g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~ 242 (450)
T PRK03932 204 AM-A-----LGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFAD 242 (450)
T ss_pred Hh-c-----cCCeEEeeeccccCCCCCccccccccccceEEeccC
Confidence 42 1 248999999999997633 34579999999988764
No 105
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00017 Score=72.33 Aligned_cols=143 Identities=22% Similarity=0.339 Sum_probs=103.8
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHH-----Hhhhhhcccc--ccceEEEEeCCCCe
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-----LFIRKAGEEI--RDQLYCFEDRGNRR 142 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~-----l~~~~~g~~~--~~~~~~~~D~~G~~ 142 (484)
.+++.+|.- .+.|........+.+.++++|...||+++..|.+|..- ++.. ..|-. -.+.|-+.+ +.+.
T Consensus 95 ~~dv~lp~~--~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P-~dHPARdmqDTFy~~~-~~~~ 170 (335)
T COG0016 95 KIDVTLPGR--RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIP-QDHPARDMQDTFYLKD-DREK 170 (335)
T ss_pred CCCcCCCCc--cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCC-CCCCcccccceEEEcC-CCCc
Confidence 344455433 44555666778888999999999999999999888742 2211 11111 134566643 3337
Q ss_pred EeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcC
Q 011527 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lg 221 (484)
++||...|+--+|++..+... |+|++.+|+|||++.....+.-+|+|+.-=+++.+- .-+.+..++.++++.++
T Consensus 171 ~lLRTHTs~vq~R~l~~~~~~---P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~--s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 171 LLLRTHTSPVQARTLAENAKI---PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNI--SFADLKGTLEEFAKKFF 244 (335)
T ss_pred eeecccCcHhhHHHHHhCCCC---CceEecccceecCCCCCcccchheeeeEEEEEeCCc--cHHHHHHHHHHHHHHhc
Confidence 899999999999999987543 999999999999997777799999999987776553 23456788888888875
No 106
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.86 E-value=0.00014 Score=79.27 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|..|.+.+++.|...||.||+||+|.... .|. ..+.|... +..+..+.||----...=|.++..
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~-----~ga--~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG---- 300 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA-----SGA--NAKSFVTHHNANAMDLFLRVAPELHLKQCIVGG---- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC-----CCC--CccceEeecccCCCCEEecCChHHHHHHHhhcc----
Confidence 347999999999999999999999999996421 111 22345332 112455556654334444444432
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||++||+|....-|.-||+|+++|..+.+
T Consensus 301 --~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 335 (659)
T PTZ00385 301 --MERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHT 335 (659)
T ss_pred --cCCEEEEeceecCCCCCCCccccccceeeeeecCC
Confidence 24899999999999876668899999999987764
No 107
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=97.64 E-value=0.00069 Score=73.75 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCccccHHH-hhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 89 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l-~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
..+++++.+++.+...||+|+.|..|...+. +.. .+.......+++.++ +.+.-+||+-+++++.+.+..|. ....
T Consensus 360 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~-~~~~ 437 (552)
T PRK09616 360 PIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK-HREY 437 (552)
T ss_pred hHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhcc-CCCC
Confidence 4456778889999999999999999988754 432 332211136777766 67788999999999999999887 4567
Q ss_pred CeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhH-HHHHHHHHHHHHHcCC
Q 011527 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAE-AELISSIITFFKRIGI 222 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~ad-aEvi~l~~~~l~~lgl 222 (484)
|+|+|++|+||+.+......++|+.+.++=+.|.+ .+ .++-.++..++..+|+
T Consensus 438 ~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~---~df~dlKg~ve~ll~~lgi 491 (552)
T PRK09616 438 PQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSE---ASFTEIKSVVQALLRELGI 491 (552)
T ss_pred CeeEEEeeEEEecCCccccCcchhhEEEEEEECCC---CCHHHHHHHHHHHHHHcCC
Confidence 99999999999865322224578999998888853 22 2345566666677776
No 108
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.61 E-value=0.00042 Score=73.43 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe--------CCCCeEeeCCCChHHHHHHHH
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--------RGNRRVALRPELTPSLARLVI 158 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D--------~~G~~l~LRpD~T~~iaR~~~ 158 (484)
.++|..|...+++.|...||.||.||+|..... . | ..++|.+.. --|+...|+--.... .+.++
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e--g---~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~-lq~l~ 207 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--E--G---AGELFRVSTDGIDFSQDFFGKEAYLTVSGQLY-LETYA 207 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--C--C---CCCceEecccccccchhccCCccccccCHHHH-HHHHh
Confidence 579999999999999999999999999976431 1 1 223454421 125555555442221 22222
Q ss_pred HcCCCCCCCeeEEEecCeeeeCcCCC-CCccceEEeEEEEEcCC
Q 011527 159 QKGKSVSLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVP 201 (484)
Q Consensus 159 ~~~~~~~lPlk~yyig~vfR~e~~~~-gr~rEf~Q~g~eiig~~ 201 (484)
. . --|.|+||++||.|.... -+.-||+|+++|.-..+
T Consensus 208 ~-g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~ 245 (453)
T TIGR00457 208 L-A-----LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFAN 245 (453)
T ss_pred h-c-----ccCceEeeeccccCCCCCCcCcchhccceeeeecCC
Confidence 1 1 248999999999997654 35579999999988764
No 109
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.45 E-value=0.0012 Score=71.23 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHH
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~ 118 (484)
+++|..+...+++.|...||.+|.||+|-..+
T Consensus 215 lRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 215 IRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 58999999999999999999999999997654
No 110
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00078 Score=69.53 Aligned_cols=101 Identities=21% Similarity=0.380 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHH-HHcCCeeecCCccccHHHhhhhhccccccceEEEE--eCCCCeEeeCCCChHHHHHHHHHcCCC
Q 011527 87 MRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--DRGNRRVALRPELTPSLARLVIQKGKS 163 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~--D~~G~~l~LRpD~T~~iaR~~~~~~~~ 163 (484)
.++|..+...+++.| .++||.+|+||+|-... -|. .+-|-+- ...|.-++|+-- -.++-.+++....
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFkrT-----PgG---A~EFvVPtr~~~g~FYaLpQS-PQQfKQlLMvsGi- 247 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRT-----PGG---AREFVVPTRTPRGKFYALPQS-PQQFKQLLMVSGI- 247 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhccC-----CCc---cceeecccCCCCCceeecCCC-HHHHHHHHHHhch-
Confidence 367777888888877 67899999999975432 222 1112221 224788888643 2344444444433
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
-|+||++.|||+|..+.-|.-||+|.|+|.==.+
T Consensus 248 ----drYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~ 281 (628)
T KOG2411|consen 248 ----DRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTD 281 (628)
T ss_pred ----hhHHhHHhhhcccccCcccCCcceeeeeEEeccC
Confidence 4899999999999888889999999999986544
No 111
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.24 E-value=0.0022 Score=69.31 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC------CC-C-eEeeC--C--------C
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR------GN-R-RVALR--P--------E 148 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~------~G-~-~l~LR--p--------D 148 (484)
.++|..+...+++.|..+||.+|.||+|...+. -| ..++|.+... ++ . ..+|+ + |
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~----EG---A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d 298 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC----EG---AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD 298 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC----Cc---cccCceeeeccccccccccccccccccCcccccccchh
Confidence 378999999999999999999999999976432 11 2344544210 01 1 01111 0 0
Q ss_pred -------ChH--HH-HHHHHHcCCCCCCCeeEEEecCeeeeCcCCCC-CccceEEeEEEEEcC
Q 011527 149 -------LTP--SL-ARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGV 200 (484)
Q Consensus 149 -------~T~--~i-aR~~~~~~~~~~lPlk~yyig~vfR~e~~~~g-r~rEf~Q~g~eiig~ 200 (484)
+|. ++ ...++.. --|.|++|++||.|..... +.-||+|+++|+-..
T Consensus 299 yF~~~~~LtvS~QL~~E~~~~~------l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 299 FFGKPAFLTVSGQLNGETYATA------LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 355 (565)
T ss_pred hhCcceeeccCchHHHHHHHhc------ccceEEEecceeCCCCCCccccccceeeeeeeecC
Confidence 000 00 0111110 2489999999999987544 458999999998654
No 112
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=97.17 E-value=0.0026 Score=59.82 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCee
Q 011527 91 NWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (484)
Q Consensus 91 ~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk 169 (484)
..+++.+++.+...||.|+.|..|...+.... .+.. .+..+++.++ +...=+||+-+.+++...+..|......|+|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~-~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG-LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLR 80 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC-CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEe
Confidence 45677889999999999999999988744332 2211 2246778777 6677789999999999999988765568999
Q ss_pred EEEecCeeeeCcCCCCCccceEEeEEEEEcCCC--------hhhHH-HHHHHHHHHHHHcCC
Q 011527 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAEA-ELISSIITFFKRIGI 222 (484)
Q Consensus 170 ~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~--------~~ada-Evi~l~~~~l~~lgl 222 (484)
+|++|+||..+.. .++|..-.++-+-|... ...|. ++-.++..+++.+|+
T Consensus 81 lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 81 LFEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGI 139 (198)
T ss_pred EEEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCC
Confidence 9999999975431 34566666666777531 11232 344556666666765
No 113
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.15 E-value=0.0045 Score=67.03 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHH
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~ 118 (484)
+++|..+...+++.|.+.||.+|.||.|-..+
T Consensus 171 ~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 171 ARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 58999999999999999999999999997653
No 114
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.88 E-value=0.0053 Score=63.88 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCc-CCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHH
Q 011527 140 NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (484)
Q Consensus 140 G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~-~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~ 218 (484)
-..+.||.-+|+...|.+..-....+.|+|+|.+|+|||+|. ...-+.++|+|+.+=+++.+-..+ ++..++..+++
T Consensus 180 s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~--DLKgvLe~LLr 257 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVD--DGKAVAEGLLA 257 (533)
T ss_pred hhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHH--HHHHHHHHHHH
Confidence 457899999999888888741112356999999999999984 345689999999999998765333 56788888888
Q ss_pred HcCCC
Q 011527 219 RIGIT 223 (484)
Q Consensus 219 ~lgl~ 223 (484)
.||..
T Consensus 258 ~LG~~ 262 (533)
T TIGR00470 258 QFGFT 262 (533)
T ss_pred HhCCc
Confidence 88864
No 115
>PLN02532 asparagine-tRNA synthetase
Probab=96.87 E-value=0.0072 Score=65.84 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccH
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESE 117 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~ 117 (484)
+++|..+...+++.|..+||.+|.||+|-..
T Consensus 235 lRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 235 TRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 5899999999999999999999999999654
No 116
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0047 Score=64.65 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceE-EEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLY-CFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~-~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
...|.+|.+.||+.+...||.||+||++.+- .|.. ...-| +..+--+-.+.||=-...-+=|.+..-
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~GGA-~ArPF~ThhNald~dlyLRIApELyLKRliVGG----- 247 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PGGA-AARPFITHHNALDMDLYLRIAPELYLKRLIVGG----- 247 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc------CCCc-ccccceeeecccCCceEEeeccHHHHHHHHhcC-----
Confidence 3678889999999999999999999999873 2322 12223 222333566788877777777887753
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEE
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMD 196 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~e 196 (484)
--|+|.||++||+|....-+.-||+++-++
T Consensus 248 -~erVfEIgr~FRNEGid~tHNPEFTmlE~Y 277 (502)
T COG1190 248 -FERVFEIGRNFRNEGIDTTHNPEFTMLEFY 277 (502)
T ss_pred -chhheeeccccccCCCccccCcchhhHHHH
Confidence 249999999999997777778888876543
No 117
>PLN02788 phenylalanine-tRNA synthetase
Probab=96.24 E-value=0.078 Score=54.98 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=76.0
Q ss_pred CChHhHHHHHHHHHHHHHHHHHc---CCeeec--CCccccHHHhhhh-hccc----cccceEEEEeCCCCeEeeCCCChH
Q 011527 82 FPPEDMRLRNWLFHNFQEVSRLF---GFEEVD--FPVLESEALFIRK-AGEE----IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 82 ~lP~~~~~~~~i~~~i~~~f~~~---Gy~eI~--tP~le~~~l~~~~-~g~~----~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
+......-...+.+.|++.|... ||..++ .|+...+..|..- ...+ -..+.|-+ + ...+||.-.|+
T Consensus 62 l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~-~---~~~lLRTHTSa 137 (402)
T PLN02788 62 LHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV-D---AQTVLRCHTSA 137 (402)
T ss_pred CCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-c---CCccccCCCcH
Confidence 33444445566778888888876 999999 6665554444321 1111 12345555 2 35899999999
Q ss_pred HHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEc
Q 011527 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIG 199 (484)
Q Consensus 152 ~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig 199 (484)
.-+|++.+. .| |++..|.|||++..-.-++-+|+|+..=++.
T Consensus 138 ~q~~~l~~~-----~~-~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 138 HQAELLRAG-----HT-HFLVTGDVYRRDSIDATHYPVFHQMEGVRVF 179 (402)
T ss_pred HHHHHHHhC-----CC-cEEEEeeEeecCCCCcccCccceeEEEEEEe
Confidence 999988752 13 8999999999998778899999999877775
No 118
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=96.09 E-value=0.063 Score=58.55 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=96.6
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHh-hhhhccccccceEEEEeC-CCCeEe
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALF-IRKAGEEIRDQLYCFEDR-GNRRVA 144 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~-~~~~g~~~~~~~~~~~D~-~G~~l~ 144 (484)
+..++..+.|.... +......+.+.+.+++.+...||+|+.|-.|...+.. .. .+.. .++..++.++ +.+.=+
T Consensus 344 Gyd~I~~~~p~~~~---~~~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~~~~-~~~~v~l~NPis~e~s~ 418 (551)
T TIGR00471 344 GYNNFPPELPLINT---IGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-MRIE-DNNDVKVANPKTLEYTI 418 (551)
T ss_pred CcccCCccCCCccc---cCCcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-hccC-CCCcEEeCCCCchhhhH
Confidence 44455444554311 1123344566788899999999999999999887432 32 2221 2245777776 567789
Q ss_pred eCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHH-HHHHHHHHHHHHcCC
Q 011527 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEA-ELISSIITFFKRIGI 222 (484)
Q Consensus 145 LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~ada-Evi~l~~~~l~~lgl 222 (484)
||+-+.+++.+.+..|. ....|+|+|++|+||..+....-+.+++...++-+.|.. .|. ++-.++..++..+|+
T Consensus 419 lR~SLlp~LL~~~~~N~-~~~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~---~df~d~Kg~ve~ll~~l~i 493 (551)
T TIGR00471 419 VRTSLLPGLLETLSENK-HHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSE---ANFNEIKSIVAALARELGI 493 (551)
T ss_pred hHhhhHHHHHHHHHhcc-cCCCCeeEEEEEEEEEcCCccccccceeeEEEEEEECCC---CCHHHHHHHHHHHHHHcCC
Confidence 99999999999999887 557899999999999643211112344467777777742 232 345566666677776
No 119
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.0028 Score=63.21 Aligned_cols=131 Identities=19% Similarity=0.273 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhh------hhhcccc--ccceEEEEeC-----------------------
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFI------RKAGEEI--RDQLYCFEDR----------------------- 138 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~------~~~g~~~--~~~~~~~~D~----------------------- 138 (484)
..+|+..+|++|-..||.|+-|--+--...|. . ..+.. ..+.|-+.|+
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqP-QqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~y 292 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQP-QQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGY 292 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCc-ccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCc
Confidence 45677899999999999999887655443331 1 00100 1122323221
Q ss_pred ------------CCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhH
Q 011527 139 ------------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAE 206 (484)
Q Consensus 139 ------------~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~ad 206 (484)
+-+..+||.-.|+--||++.+-....-.|.|+|.|.+|||+|.....+.-||+|..--|.+..-...
T Consensus 293 gs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLg- 371 (483)
T KOG2784|consen 293 GSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLG- 371 (483)
T ss_pred CCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHH-
Confidence 1135678888888888887654333345999999999999998888899999998766665543333
Q ss_pred HHHHHHHHHHHHHcCCC
Q 011527 207 AELISSIITFFKRIGIT 223 (484)
Q Consensus 207 aEvi~l~~~~l~~lgl~ 223 (484)
.+|.+..+++..+|++
T Consensus 372 -dLig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 372 -DLIGILMEFFTKLGAT 387 (483)
T ss_pred -HHHHHHHHHHhccCCc
Confidence 4799999999999987
No 120
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.0045 Score=63.70 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
..+|.+|...+|+.+...||.||+||++.-. .|....+--.+.-+.-+..+.||=---.-+-+.+...
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i------aGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGG------ 292 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI------AGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGG------ 292 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhccc------cCccccCceeecccccCcceeeeechHHHHHHHHhcc------
Confidence 4688899999999999999999999998652 3433222222221222444666654444555555543
Q ss_pred CeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHH-HHHHHHHHHHH
Q 011527 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAE-LISSIITFFKR 219 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaE-vi~l~~~~l~~ 219 (484)
--|+|+||+.||+|.....+.-||+-|-++. ..+|-+ ++.+.-+.+..
T Consensus 293 ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~-----AYady~dlm~~TE~l~s~ 341 (560)
T KOG1885|consen 293 LDRVYEIGRQFRNEGIDLTHNPEFTTCEFYM-----AYADYEDLMDMTEELLSG 341 (560)
T ss_pred HHHHHHHHHHhhhcCcccccCCCcchHHHHH-----HHhhHHHHHHHHHHHHHH
Confidence 2489999999999976666777777665442 234433 44444444443
No 121
>PRK07080 hypothetical protein; Validated
Probab=96.01 E-value=0.076 Score=52.87 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=104.8
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcC----CeeecCCccccHHHhhhhhcc--ccccceEEEEe-----------
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG----FEEVDFPVLESEALFIRKAGE--EIRDQLYCFED----------- 137 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~G----y~eI~tP~le~~~l~~~~~g~--~~~~~~~~~~D----------- 137 (484)
+|.|..-.+.. ....+.|.+.+.+++.++| ++++..|-+.+.+.|.+ ++- .+...++.+--
T Consensus 32 ~~~g~~g~ygr-s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek-~~Y~ksFP~l~~~V~~~~g~~~e~~~l 109 (317)
T PRK07080 32 IPTGVDGLYGR-SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFER-SGYLKSFPQLAGTVHSFCGNEAEHRRL 109 (317)
T ss_pred eccCCCccccc-cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHh-cChhhhCcccceeecCCCCCCHHHHHH
Confidence 45555444433 2346666677777777777 99999999999988865 332 12222332110
Q ss_pred -------------CCCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCC-CCCccceEEeEEEEEcCCCh
Q 011527 138 -------------RGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVPAV 203 (484)
Q Consensus 138 -------------~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~-~gr~rEf~Q~g~eiig~~~~ 203 (484)
.....++|.|-.|.|+.=.++.+.....--..+=-.|.|||+|... ..|..+|.|--+=.+|.+..
T Consensus 110 l~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~ 189 (317)
T PRK07080 110 LACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQ 189 (317)
T ss_pred HHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHH
Confidence 1234789999999999877775432101124445578999999643 24899999999999997653
Q ss_pred hhHH--HHHHHHHHHHHHcCCCCCceEEEeCCHHHHH
Q 011527 204 TAEA--ELISSIITFFKRIGITASDVGFRISSRKVLQ 238 (484)
Q Consensus 204 ~ada--Evi~l~~~~l~~lgl~~~~~~i~i~~~~il~ 238 (484)
..+. .-+..+..+.+.|||+ +.+.+.+-.++.
T Consensus 190 v~~~r~~w~e~~~~l~~~LgL~---~~ve~AnDPFF~ 223 (317)
T PRK07080 190 IVAFRQSWIERGTAMADALGLP---VEIDLANDPFFG 223 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc---eeEeecCCcccc
Confidence 3332 2578888888999995 888888765553
No 122
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=95.40 E-value=0.083 Score=58.12 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=97.1
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHH-hhhhhccccc-cceEEEEeC-CCCeE
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIR-DQLYCFEDR-GNRRV 143 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l-~~~~~g~~~~-~~~~~~~D~-~G~~l 143 (484)
+..++....|... . +......+++.+.+++.+...||+|+.|-.|...+. +.. .+.... +...++.++ +.+.=
T Consensus 379 Gydni~~~~P~~~-~--~g~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v~I~NP~s~e~~ 454 (597)
T PLN02265 379 GYNNIPKRKPKSM-T--VGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNREDDGNSAVIIGNPRSADFE 454 (597)
T ss_pred ccccCCccCCCcc-c--CCCCCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcCCccCCceEEECCCcchhHH
Confidence 4444545555431 1 112234567788899999999999999999988744 432 222111 245677666 55667
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHH-HHHHHHHHHHHcCC
Q 011527 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAE-LISSIITFFKRIGI 222 (484)
Q Consensus 144 ~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaE-vi~l~~~~l~~lgl 222 (484)
+||+.+.+++...++.|... ++|+|+|++|.||-.+....-..+|..-.++=+.|.. ++.+ +-.++..+|..||+
T Consensus 455 vlRtSLlPgLL~~l~~N~~~-~~p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~---~~f~~ikg~le~ll~~l~i 530 (597)
T PLN02265 455 VVRTSLLPGLLKTLGHNKDA-PKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTT---SGFEVIHGLVDRIMEVLGI 530 (597)
T ss_pred HHHHhhHHHHHHHHHHhhcC-CCCeeEEEeEeEEecCCcccCCcchhhEEEEEEECCC---CCHhhHHHHHHHHHHHcCC
Confidence 89999999999999888764 4599999999999543211001156666777677743 3333 44666667777776
Q ss_pred C
Q 011527 223 T 223 (484)
Q Consensus 223 ~ 223 (484)
.
T Consensus 531 ~ 531 (597)
T PLN02265 531 P 531 (597)
T ss_pred c
Confidence 4
No 123
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=94.11 E-value=0.35 Score=55.23 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEe
Q 011527 95 HNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAV 173 (484)
Q Consensus 95 ~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyi 173 (484)
+.+++.+..+||+|+.|-.|...+.+.. .+....+..+++.++ +...=+||+-+.+++.+.++.|......|+|+|++
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 5778888999999999999988744432 332211125777776 56667899999999999999887655678999999
Q ss_pred cCeeeeCcCCCCCccceEEeEEEEEcCCC--------hhhHH-HHHHHHHHHHHHcCCC
Q 011527 174 GQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAEA-ELISSIITFFKRIGIT 223 (484)
Q Consensus 174 g~vfR~e~~~~gr~rEf~Q~g~eiig~~~--------~~ada-Evi~l~~~~l~~lgl~ 223 (484)
|.||..... . .+|....++=+-|... ...|. ++-.++..++..+|+.
T Consensus 577 G~V~~~~~~--~-~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 577 GKVFAKDGL--G-VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred ecccCCCCC--C-cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999953211 1 4566677777777421 11233 3445556666666653
No 124
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=0.15 Score=54.32 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=74.0
Q ss_pred CCCCCCCCccEEEEEcCc--c-----hHHHHHHHHHHHHHCCCeEEEEeC-CCCHHHHHHHHHHcCCCEEEEEcCCcccc
Q 011527 391 LLPPLNHQVENIVCALDH--N-----LQGAASMVATTLRGKGQSVDLVLE-SKPLKWVFKRAARINAQRLILVGTTEWQK 462 (484)
Q Consensus 391 ~~p~~~~~~~v~Vi~~~~--~-----~~~~a~~la~~Lr~~Gi~v~~~~~-~~~~~~~~~~a~~~gi~~~iiig~~e~~~ 462 (484)
+.|+..++.+|.+++... . ....+..++..|...+++++.+.. +...+.++..++-+|+++++-+|.+..++
T Consensus 278 v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~ 357 (500)
T COG0442 278 VLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEA 357 (500)
T ss_pred cCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhhhh
Confidence 357778889998887652 1 456777888888889999999844 56789999999999999999999999999
Q ss_pred CeEEEEECCCCc--eeeeccC
Q 011527 463 GMVGVKILSSGE--QYEIKLD 481 (484)
Q Consensus 463 ~~v~vk~~~~~~--~~~v~~~ 481 (484)
.+++|.+..+++ ...+++.
T Consensus 358 ~~a~v~~r~g~~~~~~mg~yg 378 (500)
T COG0442 358 MNATVLDRDGKEQPKTMGCYG 378 (500)
T ss_pred CeeEEEecCCCccceEEEehh
Confidence 999999998887 4444443
No 125
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=92.58 E-value=0.85 Score=52.05 Aligned_cols=149 Identities=14% Similarity=0.173 Sum_probs=95.1
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEee
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVAL 145 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~L 145 (484)
+..++..++|.+... +........+.+.+++.+...||+|+.|-.|...+.... .+.. ...+++.++ +.+.=+|
T Consensus 468 Gyd~i~~~~p~~~~~--~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~~~--~~~i~l~NPis~e~~~l 542 (791)
T PRK00629 468 GYDNIPSTPPVAALT--MGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FGLN--PEPLLLLNPISEELSVM 542 (791)
T ss_pred CcccCcCcCCCcccC--CCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cCCC--CCeEEEeCCCchHHHHH
Confidence 444554555543111 112333445567788999999999999999988754432 3321 235667766 5667789
Q ss_pred CCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCC-------hhhHH-HHHHHHHHHH
Q 011527 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-------VTAEA-ELISSIITFF 217 (484)
Q Consensus 146 RpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~-------~~ada-Evi~l~~~~l 217 (484)
|+-+.+++.+.+..|......++|+|++|.||.... ...+|....++=+-|... ...|. ++-..+..++
T Consensus 543 R~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll 619 (791)
T PRK00629 543 RTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG---DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALL 619 (791)
T ss_pred HHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC---CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHH
Confidence 999999999999988765567999999999996421 123455566666666321 01232 3445566666
Q ss_pred HHcCCC
Q 011527 218 KRIGIT 223 (484)
Q Consensus 218 ~~lgl~ 223 (484)
..+|+.
T Consensus 620 ~~l~~~ 625 (791)
T PRK00629 620 EALGLP 625 (791)
T ss_pred HHcCCC
Confidence 677763
No 126
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=92.42 E-value=0.28 Score=49.98 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=71.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE---eC----CCCeEeeCCCChHHHHHH
Q 011527 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE---DR----GNRRVALRPELTPSLARL 156 (484)
Q Consensus 84 P~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~---D~----~G~~l~LRpD~T~~iaR~ 156 (484)
..-+++|..+.......|..++|..|.||++-..|.- +. .+||++. |- -|+..-|.--.-..+--+
T Consensus 129 ~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCE--Ga-----GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~ 201 (446)
T KOG0554|consen 129 GAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCE--GA-----GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAM 201 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCC--CC-----cceEEEEecCcccccccCCceEEEEeceehHHHH
Confidence 3456899999999999999999999999999876542 22 3466553 21 144444433322222221
Q ss_pred HHHcCCCCCCCeeEEEecCeeeeCcCCCC-CccceEEeEEEEEcCCC
Q 011527 157 VIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPA 202 (484)
Q Consensus 157 ~~~~~~~~~lPlk~yyig~vfR~e~~~~g-r~rEf~Q~g~eiig~~~ 202 (484)
+.. --|.|.+|+.||.|+.+.- +.-|||+.-+|+--.++
T Consensus 202 -a~~------LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 202 -ACA------LSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAES 241 (446)
T ss_pred -Hhh------hcceEeeccceecccCCchhHHhhhhhhhhHHHHHHH
Confidence 111 2488999999999987654 56899999888765543
No 127
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=92.27 E-value=0.7 Score=51.94 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=93.2
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEee
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVAL 145 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~L 145 (484)
+..++...+|.... +......+.+.+.+++.+...||+|+.|-.|-..+.+ .++.+++.++ +.+.=+|
T Consensus 380 GYdnI~~~~p~~~~---~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~--------~~~~i~l~NPiS~e~s~l 448 (704)
T CHL00192 380 GFNNFLSKLPNIKF---IGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF--------SKNEIKLKNPLIKDYSTL 448 (704)
T ss_pred CcccCccccccccc---CCCCCHHHHHHHHHHHHHHhCCCceEecccccChhhc--------CCCcEEEeCCCchHHHHH
Confidence 44455445554311 1122334566778889999999999999998776432 1235777776 5677789
Q ss_pred CCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC---------ChhhHH-HHHHHHHH
Q 011527 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP---------AVTAEA-ELISSIIT 215 (484)
Q Consensus 146 RpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~---------~~~ada-Evi~l~~~ 215 (484)
|+-+.+++...+..|......++|+|++|.||-.... ..+|....++-+.|.. ....|. ++-..+..
T Consensus 449 R~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ 525 (704)
T CHL00192 449 RSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIEN 525 (704)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHH
Confidence 9999999999999887655679999999999953211 1345556666677742 012233 24455566
Q ss_pred HHHHcCC
Q 011527 216 FFKRIGI 222 (484)
Q Consensus 216 ~l~~lgl 222 (484)
++..+|+
T Consensus 526 ll~~l~i 532 (704)
T CHL00192 526 FFQKLNL 532 (704)
T ss_pred HHHHCCC
Confidence 6667775
No 128
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.58 E-value=0.41 Score=48.92 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 88 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
++..-|+..||+.+...||.||.||-|--... -| ..++|++.=. ..--++=.|-+--+.| --. -
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS----EG---GanvF~v~Yfk~~A~LAQSPQLyKQMa----I~g----d 293 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS----EG---GANVFRVSYFKQKAYLAQSPQLYKQMA----ICG----D 293 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC----CC---CceeEEEEeccCcchhhcChHHHHHHH----Hhc----c
Confidence 56677889999999999999999999865432 12 4567776322 2233444444443333 111 1
Q ss_pred CeeEEEecCeeeeCcCCC-CCccceEEeEEEE
Q 011527 167 PLKWFAVGQCWRYERMTR-GRRREHYQWNMDI 197 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~-gr~rEf~Q~g~ei 197 (484)
--|.|.||+|||.|.+.- -+..||.-.|+|.
T Consensus 294 f~rVyeIGpVfRAEdSnthRhltEFvGLD~EM 325 (533)
T KOG0556|consen 294 FERVYEIGPVFRAEDSNTHRHLTEFVGLDLEM 325 (533)
T ss_pred hhheeeecceeeccccchhhhhHHhhCcchhh
Confidence 458999999999996543 2457777666553
No 129
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=89.79 E-value=2.9 Score=44.14 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHc--------CCeeecC--CccccHHHhhhh-hc--cc--cccceEEEEeCCCCeEeeCCCChHHHH
Q 011527 90 RNWLFHNFQEVSRLF--------GFEEVDF--PVLESEALFIRK-AG--EE--IRDQLYCFEDRGNRRVALRPELTPSLA 154 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~--------Gy~eI~t--P~le~~~l~~~~-~g--~~--~~~~~~~~~D~~G~~l~LRpD~T~~ia 154 (484)
...+.+.|.+.|... ||.-++. |+...+..|..- .. |- -..+.|-+ ....+||.-.++..+
T Consensus 44 l~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi----~~~~lLRTHTSa~q~ 119 (460)
T TIGR00469 44 LGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI----NEQHLLRAHTSAHEL 119 (460)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe----cCCceeCCCCcHHHH
Confidence 344556677777666 8988887 855444444331 11 11 12344555 245899999999999
Q ss_pred HHHHHcCCCCCCCee--EEEecCeeeeCcCCCCCccceEEeEEEEEcC
Q 011527 155 RLVIQKGKSVSLPLK--WFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (484)
Q Consensus 155 R~~~~~~~~~~lPlk--~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~ 200 (484)
|.+.+.... ..|.| +...|.|||++..-.-++-.|+|+..=.+..
T Consensus 120 ~~~~~~~~~-~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 120 ECFQGGLDD-SDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHhcccc-CCCcceeeEeecceeeCCCCccccCccceeeEEEEEec
Confidence 988765421 23777 9999999999987778999999988555544
No 130
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=88.79 E-value=1.5 Score=46.86 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=53.1
Q ss_pred CCCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhH-HHHHHHHHH
Q 011527 138 RGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAE-AELISSIIT 215 (484)
Q Consensus 138 ~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~ad-aEvi~l~~~ 215 (484)
+....-+||+-+|+++...+..|......|+|+|++|+|||.+.. ...+...+. .| ..+ ..+...+ .++-.++..
T Consensus 179 p~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~ll-sG-s~W-~~~e~vDFfDlKGiLE~ 255 (529)
T PRK06253 179 PESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYH-SA-SCV-IADEDVTVDDGKAVAEG 255 (529)
T ss_pred CccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEE-Ec-ccc-ccCCCCCHHHHHHHHHH
Confidence 345677899999999999888876556789999999999986531 111122222 22 111 1112223 345677777
Q ss_pred HHHHcCCC
Q 011527 216 FFKRIGIT 223 (484)
Q Consensus 216 ~l~~lgl~ 223 (484)
+++.+|++
T Consensus 256 LL~~LGI~ 263 (529)
T PRK06253 256 LLSQFGFT 263 (529)
T ss_pred HHHHcCCC
Confidence 78888874
No 131
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=83.20 E-value=0.59 Score=47.38 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=54.3
Q ss_pred CCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHH
Q 011527 139 GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFF 217 (484)
Q Consensus 139 ~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l 217 (484)
....+.||.-||....-.+..-....++|+|+|.|..|||.|+. ..-|.--++-+.+-+++.+-.-.+. =.++.-+|
T Consensus 179 ~s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~G--KaVAEglL 256 (536)
T COG2024 179 ESSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDG--KAVAEGLL 256 (536)
T ss_pred CCCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCccccccc--HHHHHHHH
Confidence 34578899998877543333322234679999999999998842 2335566777888888764221111 12233446
Q ss_pred HHcCCCCCceEE
Q 011527 218 KRIGITASDVGF 229 (484)
Q Consensus 218 ~~lgl~~~~~~i 229 (484)
+++|+. +|.+
T Consensus 257 ~qfGFe--~F~F 266 (536)
T COG2024 257 RQFGFE--KFRF 266 (536)
T ss_pred HHhCcc--ceee
Confidence 788886 4443
No 132
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=79.71 E-value=3.8 Score=45.68 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCC
Q 011527 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLP 167 (484)
Q Consensus 89 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~lP 167 (484)
..+...+.+++.+...||+|+.|-.|.+.+........ ..+..++.++ +-..-+||+-+-+++...+..|.. ++.|
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~--~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~-r~~~ 428 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLE--NDEALELANPISEEYSVLRTSLLPGLLEALSYNKN-RKNP 428 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccC--CCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhc-cCCC
Confidence 45556677888899999999999999998765542221 1115566655 456678999999999999988765 3567
Q ss_pred -eeEEEecCeeeeCc
Q 011527 168 -LKWFAVGQCWRYER 181 (484)
Q Consensus 168 -lk~yyig~vfR~e~ 181 (484)
.|+|++|.||-.+.
T Consensus 429 ~~~iFEiG~v~~~~~ 443 (650)
T COG0072 429 DVRIFEIGDVFVKDE 443 (650)
T ss_pred CeeEEEeeeeEecCC
Confidence 99999999999764
No 133
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=67.62 E-value=22 Score=34.57 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=49.3
Q ss_pred HHHHHHHHH-HHHhc-CCcceEEEecCCccCCCcee-ceeEEEEe---cCCCcceeecCcccc-HhHhhcCC-CCCceec
Q 011527 303 VADLKLLFS-LAEKF-GYSDWIQFDASVVRGLAYYT-GIVFECFD---RDGKLRAICGGGRYD-QLLSTFGG-DDIPACG 374 (484)
Q Consensus 303 ~~~L~~l~~-~l~~~-g~~~~i~~Dl~l~r~~~YYt-G~vFe~~~---~~g~~~~i~~GGRYD-~L~~~f~~-~~~pavG 374 (484)
+.+|+.+++ +++.+ |....+.+.++.. .|+. |.-..+++ ..+....|++.|-.. +.++.+|- ...+++.
T Consensus 139 f~~Lk~~l~~l~~~lfG~~~~~r~~ps~f---PftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid~~~~~~A 215 (247)
T PF01409_consen 139 FEDLKGTLEELLKELFGIDVKVRFRPSYF---PFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGIDEEYPGFA 215 (247)
T ss_dssp HHHHHHHHHHHHHHHHTTTEEEEEEECEE---TTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--TTSEEEE
T ss_pred hhHHHHHHHHHHHHHhhcccceEeecCCC---CcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcCccceEEE
Confidence 445554433 44555 7765677776532 2222 44445554 334445688888887 46777774 3578889
Q ss_pred ccchHHHHHHHH
Q 011527 375 FGFGDAVILELL 386 (484)
Q Consensus 375 fsigierl~~~l 386 (484)
|++|+|||+-+.
T Consensus 216 ~G~GleRlam~~ 227 (247)
T PF01409_consen 216 FGLGLERLAMLK 227 (247)
T ss_dssp EEEEHHHHHHHH
T ss_pred ecCCHHHHHHHH
Confidence 999999997664
No 134
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.13 E-value=20 Score=36.98 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.++|..+.+.+|+.|...||.||.+|.+--..+- | ..-+|++ |--|+.-.|-- + ...+..-- .+-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVE----G---GsTLFkl-dYyGEeAyLTQ----S-SQLYLEtc--lpA 307 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQVE----G---GSTLFKL-DYYGEEAYLTQ----S-SQLYLETC--LPA 307 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEec----C---cceEEee-cccCchhhccc----h-hHHHHHHh--hhh
Confidence 4678888899999999999999999998765431 2 2346776 55566544422 2 12222211 111
Q ss_pred CeeEEEecCeeeeCcCCC-CCccceEEeEEEEEc
Q 011527 167 PLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIG 199 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~-gr~rEf~Q~g~eiig 199 (484)
--..|.|.+.||.|++.- -+..|++-..+|+--
T Consensus 308 lgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~af 341 (545)
T KOG0555|consen 308 LGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAF 341 (545)
T ss_pred cCceeEecHhhhhhhhhhhhhhhhheeeeeeccc
Confidence 357899999999997543 356788888777643
No 135
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=63.75 E-value=37 Score=36.18 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=58.5
Q ss_pred HHHHHHHHH-HHHHhcCCcceEEEecCCccCCCceeceeEEEEecC---CCcceeecCcccc-HhHhhcCCCCCceeccc
Q 011527 302 AVADLKLLF-SLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD---GKLRAICGGGRYD-QLLSTFGGDDIPACGFG 376 (484)
Q Consensus 302 ~~~~L~~l~-~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~---g~~~~i~~GGRYD-~L~~~f~~~~~pavGfs 376 (484)
.+++|+.++ .++..+|. ..+.|-++--|...|+-++-.|++... +....|++.|=|. +.+..+|- +.|.+.|+
T Consensus 244 Sf~DLKgvLe~LLr~LG~-~~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GI-d~PV~AFG 321 (533)
T TIGR00470 244 SVDDGKAVAEGLLAQFGF-TKFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNI-DVPVMNLG 321 (533)
T ss_pred CHHHHHHHHHHHHHHhCC-ceEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCC-CCceEEEE
Confidence 356666554 35566776 458888887777777667777886532 2346789999998 57788875 46778889
Q ss_pred chHHHHHHHH
Q 011527 377 FGDAVILELL 386 (484)
Q Consensus 377 igierl~~~l 386 (484)
+|+||+.-+.
T Consensus 322 IGVERlAMi~ 331 (533)
T TIGR00470 322 LGVERLAMIL 331 (533)
T ss_pred ecHHHHHHHH
Confidence 9999997664
No 136
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=55.07 E-value=48 Score=31.94 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=43.0
Q ss_pred CccEEEEEcCcc------------hHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 398 QVENIVCALDHN------------LQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 398 ~~~v~Vi~~~~~------------~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
|-+|.++|-..+ ..+....+.++|+++||+|.+..++. .++++.|.+.|++++-+--
T Consensus 84 P~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~VELhT 152 (237)
T TIGR00559 84 PEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRIEIHT 152 (237)
T ss_pred CCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEec
Confidence 456667665421 23567788999999999999886654 5789999999999976654
No 137
>PRK03972 ribosomal biogenesis protein; Validated
Probab=53.87 E-value=1.3e+02 Score=28.59 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=51.2
Q ss_pred EEcCcchHHHHHHHHHHHHHCCCeEEEEeCCC-CHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCC
Q 011527 404 CALDHNLQGAASMVATTLRGKGQSVDLVLESK-PLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSG 473 (484)
Q Consensus 404 i~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~-~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~ 473 (484)
+..+.+-.....+.+++|...=-.++...+++ ++++.+++|...|+..+|+|.+..-+-+.+.|-++-.|
T Consensus 4 ITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~g 74 (208)
T PRK03972 4 ITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPE 74 (208)
T ss_pred EECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCC
Confidence 34444445567888888887644556666654 79999999999999999999987555567777776543
No 138
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=53.42 E-value=52 Score=31.78 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=38.8
Q ss_pred CccEEEEEcCcc------------hHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 398 QVENIVCALDHN------------LQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 398 ~~~v~Vi~~~~~------------~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
|-+|.++|-..+ .......+.++|+++||+|.+..++. .++++.|.+.|++++-+-
T Consensus 85 P~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 85 PDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELH 152 (239)
T ss_dssp -SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEE
T ss_pred cCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEe
Confidence 457777776521 34677889999999999999887653 578999999999987654
No 139
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=52.26 E-value=58 Score=31.35 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 411 QGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 411 ~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
.+....+.++|+++||+|.+..++. .++++.|.+.|++++-+--
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VELhT 152 (234)
T cd00003 109 AEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHT 152 (234)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEec
Confidence 4667788999999999999877654 5689999999999976654
No 140
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=50.41 E-value=1.2 Score=46.20 Aligned_cols=62 Identities=35% Similarity=0.618 Sum_probs=47.9
Q ss_pred ceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCC-CCceecccchHHHHHHH
Q 011527 320 DWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGD-DIPACGFGFGDAVILEL 385 (484)
Q Consensus 320 ~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~-~~pavGfsigierl~~~ 385 (484)
.+...|..+.+..+||+|-+||...+. ...+|||||.+...++.. .++++|+++..++..+.
T Consensus 322 ~~~~~~~~f~~~~~~~~~~~~e~~~~~----r~~g~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
T COG3705 322 EERRYAALFGRELDYYTGAAFEAAQAL----RLAGGGRYDRLLTGLGASEEIPGVGFSLWLDRGVAV 384 (390)
T ss_pred ccchhhhccCccchhhHHHHHHHHHHh----cccCCeEEEecccccchHhhhcccceeEeeccccee
Confidence 356788888899999999999987532 267999999998766642 47889999887776443
No 141
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=48.95 E-value=59 Score=34.69 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=37.4
Q ss_pred EeeCCCChHHHHHHHHHcCCCCCCCeeEEEecC-eeeeCcCCCCCccceEEeEEE
Q 011527 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQ-CWRYERMTRGRRREHYQWNMD 196 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~-vfR~e~~~~gr~rEf~Q~g~e 196 (484)
=+.|.-+-+++...++.|.. .++|+|+|+++. ||.++....|-..|-.-|.++
T Consensus 443 qv~RtsLlPGllKTv~~N~~-~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A~y 496 (578)
T KOG2472|consen 443 QVVRTSLLPGLLKTVASNRK-MPLPIKLFEISDVVFKDSSTEVGARNERHLAAVY 496 (578)
T ss_pred eeehhhhchHHHHHHHhccC-CCCceeEEEeeeEEEecccccccccchheeeeee
Confidence 35677888999999988765 589999999999 566655555544444444443
No 142
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.51 E-value=1e+02 Score=35.52 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHH---HhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEA---LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~---l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
-..|++.+.+.|++.|-..+.+..|-|.+ ++. ....|+.|.+- +... .. +.
T Consensus 8 ~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLf------tnAGm~~FK~~------------------f~g~-v~-p~ 61 (879)
T COG0013 8 TNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLF------TNAGMVQFKPY------------------FTGG-VT-PP 61 (879)
T ss_pred HHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEE------eecccccchhh------------------hcCC-CC-CC
Confidence 35677999999999999999887777741 111 23446666432 1111 11 12
Q ss_pred CeeEEEecCeeeeC---cCCC-CCcc-ceEEeEEEEEcCCChhhHHHHHHHHHHHH-HHcCCCCCceEEEe
Q 011527 167 PLKWFAVGQCWRYE---RMTR-GRRR-EHYQWNMDIIGVPAVTAEAELISSIITFF-KRIGITASDVGFRI 231 (484)
Q Consensus 167 Plk~yyig~vfR~e---~~~~-gr~r-Ef~Q~g~eiig~~~~~adaEvi~l~~~~l-~~lgl~~~~~~i~i 231 (484)
+-|....++|-|-. ..+. +|.. =|-|.|=..|| ..=-.|.|..++++| +-||++...+.+.+
T Consensus 62 ~~r~~~sQkcIR~NDieNVG~T~RHhTfFEMLGNfSFG---dYFKeeAI~~AwEflT~~lgl~~ekL~vtv 129 (879)
T COG0013 62 ANRAVTSQKCIRTNDIDNVGYTARHHTFFEMLGNFSFG---DYFKEEAIEFAWEFLTKVLGLPKEKLYVTV 129 (879)
T ss_pred CCCeeccccccccCchhhcCccccchhHHHhhhcCchh---HHHHHHHHHHHHHHHHhhcCCCHHHEEEEE
Confidence 33777777888863 2222 3333 33356666666 222347899999999 77899766565554
No 143
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=48.08 E-value=19 Score=36.70 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=19.7
Q ss_pred hHhhcCCCCCceecccchHHHHHHHHHH
Q 011527 361 LLSTFGGDDIPACGFGFGDAVILELLKE 388 (484)
Q Consensus 361 L~~~f~~~~~pavGfsigierl~~~l~e 388 (484)
.++.+.....|..|||+|+|||+.++..
T Consensus 287 yl~a~~~G~pp~~G~glGleRL~m~~~g 314 (329)
T cd00775 287 FVTALEYGMPPTGGLGIGIDRLVMLLTD 314 (329)
T ss_pred HHHHHHCCCCCCCcEEecHHHHHHHHcC
Confidence 4554421135788999999999988754
No 144
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=47.03 E-value=13 Score=36.79 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.5
Q ss_pred CceecccchHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKE 388 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e 388 (484)
.|..|||+|+||++.++..
T Consensus 236 pp~~G~glGieRL~m~~~g 254 (269)
T cd00669 236 PPHGGLGIGIDRLIMLMTN 254 (269)
T ss_pred CCCceEeeHHHHHHHHHhC
Confidence 5788999999999988764
No 145
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=45.67 E-value=84 Score=30.37 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 411 QGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 411 ~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
.+....+.++|+++||+|.+..++ -.++++.|.+.|++++-+--
T Consensus 112 ~~~l~~~i~~L~~~gIrVSLFidP--~~~qi~~A~~~GAd~VELhT 155 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFIDP--DPEQIEAAAEVGADRIELHT 155 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEec
Confidence 456778899999999999987654 34689999999999976654
No 146
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=43.52 E-value=15 Score=36.50 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.5
Q ss_pred CceecccchHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKE 388 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e 388 (484)
.|+.||++|+||++.++..
T Consensus 247 pP~~G~giGidRL~m~~~g 265 (280)
T cd00777 247 PPHGGIALGLDRLVMLLTG 265 (280)
T ss_pred CCCCeEeEhHHHHHHHHcC
Confidence 5788999999999998754
No 147
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=40.44 E-value=62 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=27.7
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVL 432 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~ 432 (484)
.|+.|++++.. ...|++.++.|++.|+++.+..
T Consensus 10 ~di~iia~G~~-~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 10 ADITIIAYGSM-VEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSEEEEEETTH-HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeehHH-HHHHHHHHHHHHHcCCceeEEe
Confidence 48899998764 5789999999999999988753
No 148
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.11 E-value=1.9e+02 Score=25.06 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=37.4
Q ss_pred ccEEEEEcCcch-HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 399 VENIVCALDHNL-QGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 399 ~~v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
..+++..++.+. -.-+.-++..|+.+|+.|.-.-...+.++..+.|.+.+++.+++-+
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 345555555443 3345556777888888875443355778888888888888766554
No 149
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.18 E-value=2.2e+02 Score=23.73 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEE
Q 011527 415 SMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLIL 454 (484)
Q Consensus 415 ~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~ii 454 (484)
.-++..|+..|+.|.....+-+.++..+.+.+.+...+.+
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i 56 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL 56 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 4455555666665533222334555555555555554333
No 150
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=35.48 E-value=90 Score=28.54 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=16.4
Q ss_pred EEEcCc-chHHHHHHHHHHHHHCCCeEEEE
Q 011527 403 VCALDH-NLQGAASMVATTLRGKGQSVDLV 431 (484)
Q Consensus 403 Vi~~~~-~~~~~a~~la~~Lr~~Gi~v~~~ 431 (484)
+++++. +..++..+...+++++|+++-+.
T Consensus 39 Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 39 LVPWDNPDATPELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred eecccCCCCCHHHHHHHHHHHhcCCEEEEE
Confidence 444443 23455666666666666666544
No 151
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.36 E-value=2.1e+02 Score=25.79 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=38.3
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe--CC----CCHHHHHHHHHHcCCCEEEEE
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVL--ES----KPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~--~~----~~~~~~~~~a~~~gi~~~iii 455 (484)
..|+|++-..+.=..++.+|+.|.+.|++|.+.. .. +....+++.++..|++++-..
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 4566665444455679999999999999999832 22 136778888888887764433
No 152
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.07 E-value=2.2e+02 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 414 ASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 414 a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
..-++..|+.+|+.|...-...+.++..+.+.+.+...+++-.
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 3445555666666665443344566666666666666555443
No 153
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.28 E-value=3.2e+02 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=39.0
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHHH---cCCCEEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAAR---INAQRLILV 455 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~~---~gi~~~iii 455 (484)
+|.|+.-+......+.+.+..|.+.|+..++..- .++.++..++.+. .|++-+|.+
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEE
Confidence 5777777777788999999999999998887654 3566666666554 466644443
No 154
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=32.75 E-value=1.4e+02 Score=26.68 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEeCCC---CHHHHHHHHHHcCCCEEEEEc
Q 011527 410 LQGAASMVATTLRGKGQSVDLVLESK---PLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 410 ~~~~a~~la~~Lr~~Gi~v~~~~~~~---~~~~~~~~a~~~gi~~~iiig 456 (484)
..+-+..+.+.|++.|++|.+.-... ++.+..+.|+..++..+|-|-
T Consensus 26 ~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH 75 (175)
T PF01520_consen 26 NLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIH 75 (175)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEe
Confidence 35678899999999999888764432 699999999999999988764
No 155
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.45 E-value=3.2e+02 Score=23.88 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=28.9
Q ss_pred EEEEEcCcch-HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEE
Q 011527 401 NIVCALDHNL-QGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLI 453 (484)
Q Consensus 401 v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~i 453 (484)
+++...+.+. .--..-++..|+.+|+.|...-.+.+.++..+.|.+.+...+.
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~ 59 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAIL 59 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEE
Confidence 4444444432 2233445566677777765443344566666666666666543
No 156
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=31.58 E-value=79 Score=27.27 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCcceEEEecC-------CccCCCceeceeE
Q 011527 303 VADLKLLFSLAEKFGYSDWIQFDAS-------VVRGLAYYTGIVF 340 (484)
Q Consensus 303 ~~~L~~l~~~l~~~g~~~~i~~Dl~-------l~r~~~YYtG~vF 340 (484)
+.+++.+.+.++..|+. |.+|=. ...|+|||||.++
T Consensus 21 ~~d~k~~kk~m~~~gIk--V~Idkk~kilP~n~aagFd~~tg~I~ 63 (132)
T PF15640_consen 21 VKDIKNFKKEMGKRGIK--VKIDKKDKILPENKAAGFDPETGEIY 63 (132)
T ss_pred HHHHHHHHHHHHhCCcE--EEECCccCCCCccccccCCCCCCcEE
Confidence 56777788889999987 656644 3458999999754
No 157
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=31.07 E-value=1.6e+02 Score=28.09 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=41.1
Q ss_pred CccEEEEEcCcc------------hHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 398 QVENIVCALDHN------------LQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 398 ~~~v~Vi~~~~~------------~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
|-+|.++|-..+ ..+....+.++|.+.||+|.+..+. -..+++.|...|++++-+-
T Consensus 85 P~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~--d~~qi~aa~~~gA~~IELh 152 (243)
T COG0854 85 PHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDP--DPEQIEAAAEVGAPRIELH 152 (243)
T ss_pred CCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCC--CHHHHHHHHHhCCCEEEEe
Confidence 456777665421 1345667889999999999987653 3468999999999997655
No 158
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=31.05 E-value=1.8e+02 Score=29.87 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=38.9
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC--C--CHHHHHHHHHHcCCCEEEEEcCC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES--K--PLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~--~--~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
.|+.|+..+. ....|++.++.|.+.||++++.+-. + ..+...+.++ +.+.++++-+.
T Consensus 229 ~dvtIia~G~-~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~--~t~~vvtvEE~ 289 (356)
T PLN02683 229 KDVTIVAFSK-MVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVR--KTNRLVTVEEG 289 (356)
T ss_pred CCEEEEEccH-HHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHh--hcCeEEEEeCC
Confidence 4888888775 4678999999999999999886432 2 2333334443 44577888553
No 159
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=31.04 E-value=28 Score=36.79 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.4
Q ss_pred CceecccchHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKE 388 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e 388 (484)
.|..||++|+||++.++..
T Consensus 391 pP~~G~GiGidRL~m~l~g 409 (428)
T TIGR00458 391 PPHAGWGLGAERFVMFLLG 409 (428)
T ss_pred CCcCceeecHHHHHHHHcC
Confidence 5788999999999998754
No 160
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.85 E-value=2.8e+02 Score=23.42 Aligned_cols=71 Identities=14% Similarity=0.008 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEcC-cchHHHHHHHHHHHHHCCC-eEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 378 GDAVILELLKEKGLLPPLNHQVENIVCALD-HNLQGAASMVATTLRGKGQ-SVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 378 gierl~~~l~e~~~~p~~~~~~~v~Vi~~~-~~~~~~a~~la~~Lr~~Gi-~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
-.+.+++...+.+ .++++++.. ......+.++++.|++.|. .+.+..-+.......+...+.|+.-++-.
T Consensus 38 p~e~~~~~a~~~~--------~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 38 TPEEIVEAAIQED--------VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred CHHHHHHHHHHcC--------CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 3455566655432 355555544 4456778888999999876 44444444344555666677888875544
Q ss_pred c
Q 011527 456 G 456 (484)
Q Consensus 456 g 456 (484)
|
T Consensus 110 ~ 110 (122)
T cd02071 110 G 110 (122)
T ss_pred C
Confidence 4
No 161
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=29.41 E-value=2.3e+02 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=19.7
Q ss_pred HHHCCCeEEEEeCC---CCHHHHHHHHHHcCCCEEEEEc
Q 011527 421 LRGKGQSVDLVLES---KPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 421 Lr~~Gi~v~~~~~~---~~~~~~~~~a~~~gi~~~iiig 456 (484)
+.+.|+.+...... ...++++++|.+.+...++++|
T Consensus 60 ~~~~~~~~~~~p~~KD~TD~e~Al~~~~~~~~~~i~i~G 98 (208)
T cd07995 60 YKSKGVEIIHFPDEKDFTDFEKALKLALERGADEIVILG 98 (208)
T ss_pred HHhcCCeEEECCCCCCCCHHHHHHHHHHHcCCCEEEEEc
Confidence 33445555443331 1366666666666666666665
No 162
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.08 E-value=1.6e+02 Score=24.86 Aligned_cols=51 Identities=6% Similarity=0.053 Sum_probs=31.9
Q ss_pred CCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCC
Q 011527 397 HQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQ 450 (484)
Q Consensus 397 ~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~ 450 (484)
.+.|.+++....+ ...++.+++.+.|++.-+...+..-.+..+.|++.|+.
T Consensus 54 ~~iDlavv~~~~~---~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 54 EPIDLAVVCVPPD---KVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp ST-SEEEE-S-HH---HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CCCCEEEEEcCHH---HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 4578888887754 45566777777898877666666677788888888876
No 163
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=28.73 E-value=34 Score=36.31 Aligned_cols=47 Identities=34% Similarity=0.506 Sum_probs=30.7
Q ss_pred eEEEEecCCCcceeecCc----cccHhHhhcC-----------------CCCCceecccchHHHHHHHHHH
Q 011527 339 VFECFDRDGKLRAICGGG----RYDQLLSTFG-----------------GDDIPACGFGFGDAVILELLKE 388 (484)
Q Consensus 339 vFe~~~~~g~~~~i~~GG----RYD~L~~~f~-----------------~~~~pavGfsigierl~~~l~e 388 (484)
.|+++.+ |. .||+|+ +|+.+.+++. ....|+.||++|+||++.++..
T Consensus 351 ~fdl~~~-g~--Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g 418 (437)
T PRK05159 351 SFDLLFR-GL--EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLG 418 (437)
T ss_pred EEEEEEC-CE--EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcC
Confidence 5888875 43 577774 3444433321 1135788999999999998754
No 164
>PLN02221 asparaginyl-tRNA synthetase
Probab=28.44 E-value=35 Score=37.47 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.7
Q ss_pred eeEEEecCeeeeCcCC-CCCccceEEeEEEEEcC
Q 011527 168 LKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGV 200 (484)
Q Consensus 168 lk~yyig~vfR~e~~~-~gr~rEf~Q~g~eiig~ 200 (484)
-|.|++|++||.|... .-+.-||+++++|.-..
T Consensus 327 ~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~ 360 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA 360 (572)
T ss_pred CCeEEEccceecCCCCCCcccccccceeeeeecC
Confidence 5899999999999763 45789999999997654
No 165
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=27.89 E-value=34 Score=37.75 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.8
Q ss_pred cccHhHhhcCCCCCceecccchHHHHHHHHHHc
Q 011527 357 RYDQLLSTFGGDDIPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 357 RYD~L~~~f~~~~~pavGfsigierl~~~l~e~ 389 (484)
+|..++..|.--..|..|+|+|+||++.+|...
T Consensus 514 ~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~ 546 (588)
T PRK00476 514 KFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGA 546 (588)
T ss_pred HHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Confidence 566677655433468899999999999998654
No 166
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=27.74 E-value=36 Score=36.20 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=17.0
Q ss_pred CceecccchHHHHHHHHHHc
Q 011527 370 IPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e~ 389 (484)
.|..||++|+||++.++...
T Consensus 413 pP~gG~GiGidRL~m~l~g~ 432 (450)
T PRK03932 413 VPHSGFGLGFERLVAYITGL 432 (450)
T ss_pred CCCCcEeehHHHHHHHHhCC
Confidence 57889999999999988643
No 167
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.44 E-value=3.2e+02 Score=26.24 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 377 FGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 377 igierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
.|+++++..+.+.| ++-++++ +-..++...+.+.++++|+..-+...+.+..+.++........++.+++
T Consensus 91 ~G~~~fi~~~~~aG--------~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 91 YGLERFLRDAKEAG--------VDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred hCHHHHHHHHHHCC--------CcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEe
Confidence 35688888777765 2333442 1113466778888899998887766666655555555554555555543
No 168
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=27.09 E-value=2.7e+02 Score=24.79 Aligned_cols=48 Identities=23% Similarity=0.148 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEeCC---CCHHHHHHHHHHcCCCEEEEEcC
Q 011527 410 LQGAASMVATTLRGKGQSVDLVLES---KPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 410 ~~~~a~~la~~Lr~~Gi~v~~~~~~---~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
...-+..+.+.|.+.|++|.+.-.+ .++.+..+.|+..++..+|-+--
T Consensus 27 ~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~ 77 (172)
T cd02696 27 NLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHA 77 (172)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEee
Confidence 3567888999999999999877543 36999999999999998877643
No 169
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.31 E-value=4.6e+02 Score=24.58 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=39.1
Q ss_pred CccccHhHhhcCCCC--Cceec-ccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcch--HHHHHHHHHHHHHCCCeEE
Q 011527 355 GGRYDQLLSTFGGDD--IPACG-FGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNL--QGAASMVATTLRGKGQSVD 429 (484)
Q Consensus 355 GGRYD~L~~~f~~~~--~pavG-fsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~--~~~a~~la~~Lr~~Gi~v~ 429 (484)
.|-|.++.--+||.- .-++| -.++++.|++.+.+.+ ++=+|+..+... ...|.=+++.|...|++|.
T Consensus 96 ~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~--------v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvt 167 (195)
T TIGR00615 96 TKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQEES--------VKEVILATNPTVEGEATALYIARLLQPFGVKVT 167 (195)
T ss_pred hCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCC--------CcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEE
Confidence 455555444445432 33454 2367888888776432 222456666543 3456778888988888774
No 170
>PRK00076 recR recombination protein RecR; Reviewed
Probab=25.12 E-value=4.7e+02 Score=24.51 Aligned_cols=66 Identities=24% Similarity=0.383 Sum_probs=38.7
Q ss_pred CccccHhHhhcCCC--CCceec-ccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcch--HHHHHHHHHHHHHCCCeEE
Q 011527 355 GGRYDQLLSTFGGD--DIPACG-FGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNL--QGAASMVATTLRGKGQSVD 429 (484)
Q Consensus 355 GGRYD~L~~~f~~~--~~pavG-fsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~--~~~a~~la~~Lr~~Gi~v~ 429 (484)
.|-|.++.--+||. +..++| -.+.++.|++.+ +.+ ++=+|+..+... ...|.=+++.|...|++|.
T Consensus 96 s~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~ri-~~~--------v~EVIlA~~pt~EGe~Ta~yi~~~lk~~~ikvt 166 (196)
T PRK00076 96 TGEYRGLYHVLGGLLSPLDGIGPEDLNIDELLERL-DGE--------VKEVILATNPTVEGEATAHYIARLLKPLGVKVT 166 (196)
T ss_pred hCcCceEEEEecCCcCCCCCCCccccCHHHHHHHH-hCC--------CCEEEEeCCCCchHHHHHHHHHHHHHHcCCCee
Confidence 44455444444443 334555 336788888887 321 233466666543 3457778889988887764
No 171
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=25.02 E-value=3.9e+02 Score=21.93 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=36.1
Q ss_pred cEEEEEcC-c--chHHHHHHHHHHHHHCCCeEEEEeCCC----C-------HHHHHHHHHHcCCCEEEEE
Q 011527 400 ENIVCALD-H--NLQGAASMVATTLRGKGQSVDLVLESK----P-------LKWVFKRAARINAQRLILV 455 (484)
Q Consensus 400 ~v~Vi~~~-~--~~~~~a~~la~~Lr~~Gi~v~~~~~~~----~-------~~~~~~~a~~~gi~~~iii 455 (484)
++.|+|++ . +..++..++.+.|++.|++.++...+- . +++..+.+.+.|++.++..
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ 73 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTS 73 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 67788886 2 345667778888888998877654321 2 3344455556788886544
No 172
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=24.93 E-value=2.3e+02 Score=28.74 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=37.6
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC--C--CHHHHHHHHHHcCCCEEEEEcCC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES--K--PLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~--~--~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
.|+.|+..+. ....|++.++.|.+.||++++.+-. + +.+...+.+++ ...++++-+.
T Consensus 202 ~ditiia~G~-~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~--t~~vv~vEE~ 262 (327)
T CHL00144 202 NDITILTYSR-MRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKK--THKVLIVEEC 262 (327)
T ss_pred CCEEEEEccH-HHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHh--hCcEEEEECC
Confidence 4788888774 4667899999999999999886432 1 23333444443 4567777543
No 173
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=24.70 E-value=44 Score=35.59 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=16.5
Q ss_pred CceecccchHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKE 388 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e 388 (484)
.|.-||++|+||++.++..
T Consensus 416 pPhgG~GiGieRlvm~l~g 434 (453)
T TIGR00457 416 VPHSGFGLGFERLLAYITG 434 (453)
T ss_pred CCCCcEeehHHHHHHHHhC
Confidence 5788999999999998864
No 174
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.48 E-value=3.8e+02 Score=22.22 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEcC-cchHHHHHHHHHHHHHCCC-eEEEEeCCCCHHHHHHHHHHcCCCEEEE
Q 011527 378 GDAVILELLKEKGLLPPLNHQVENIVCALD-HNLQGAASMVATTLRGKGQ-SVDLVLESKPLKWVFKRAARINAQRLIL 454 (484)
Q Consensus 378 gierl~~~l~e~~~~p~~~~~~~v~Vi~~~-~~~~~~a~~la~~Lr~~Gi-~v~~~~~~~~~~~~~~~a~~~gi~~~ii 454 (484)
..+.++..+.+. ..|++.++.. ......+.++++.+++.+- .+.+..-+.-....-+.+...|+..++-
T Consensus 38 ~~~~l~~~~~~~--------~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 38 PPEEIVEAAKEE--------DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CHHHHHHHHHHc--------CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 345556665543 2366666665 4456778889999999875 5555544432222224677888876443
No 175
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.77 E-value=2.6e+02 Score=23.00 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeE
Q 011527 376 GFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSV 428 (484)
Q Consensus 376 sigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v 428 (484)
.+|+..+...|.+.| .+|.++..... ..++.+.+++....+
T Consensus 14 ~lGl~~la~~l~~~G--------~~v~~~d~~~~----~~~l~~~~~~~~pd~ 54 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAG--------HEVDILDANVP----PEELVEALRAERPDV 54 (121)
T ss_dssp SHHHHHHHHHHHHTT--------BEEEEEESSB-----HHHHHHHHHHTTCSE
T ss_pred hHHHHHHHHHHHHCC--------CeEEEECCCCC----HHHHHHHHhcCCCcE
Confidence 345666777777654 35555543322 145556666665554
No 176
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.48 E-value=4.2e+02 Score=21.79 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.8
Q ss_pred CEEEEEcCC
Q 011527 450 QRLILVGTT 458 (484)
Q Consensus 450 ~~~iiig~~ 458 (484)
+-.+++|-.
T Consensus 80 ~~~ivvGG~ 88 (125)
T cd02065 80 DIPVVVGGA 88 (125)
T ss_pred CCeEEEeCC
Confidence 355666643
No 177
>PRK13844 recombination protein RecR; Provisional
Probab=23.46 E-value=3.3e+02 Score=25.67 Aligned_cols=66 Identities=9% Similarity=0.309 Sum_probs=37.5
Q ss_pred CccccHhHhhcCCC--CCceec-ccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcch--HHHHHHHHHHHHHCCCeEE
Q 011527 355 GGRYDQLLSTFGGD--DIPACG-FGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNL--QGAASMVATTLRGKGQSVD 429 (484)
Q Consensus 355 GGRYD~L~~~f~~~--~~pavG-fsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~--~~~a~~la~~Lr~~Gi~v~ 429 (484)
.|-|+++.--+||. +..++| -.+.++.|++.+.+.+ ++=+|+..+... ...|.-+++.|+. |++|.
T Consensus 100 t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~~~~--------v~EVIlAt~~t~EGe~Ta~yi~~~lk~-~vkvt 170 (200)
T PRK13844 100 AGIYRGKYFVLNGRISPLDGIGPSELKLDILQQIIADRK--------IDEVILAISPTVEGETTAHFISQMIAK-DIKIS 170 (200)
T ss_pred hCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCC--------CcEEEEeCCCCccHHHHHHHHHHHhcC-CCcEE
Confidence 44455544444443 233444 3357888887776432 223456666543 3456778888887 87774
No 178
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=22.91 E-value=6.3e+02 Score=23.58 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=47.8
Q ss_pred CcchHHHHHHHHHHHHHCCCeEEEEeC-CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECC
Q 011527 407 DHNLQGAASMVATTLRGKGQSVDLVLE-SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILS 471 (484)
Q Consensus 407 ~~~~~~~a~~la~~Lr~~Gi~v~~~~~-~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~ 471 (484)
+.+-.......|+.|..-=-.+....+ ..++.+....|...|+..++||++..-.-+.+++.++.
T Consensus 9 SRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~ 74 (191)
T COG2136 9 SRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLE 74 (191)
T ss_pred cCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEec
Confidence 444445677888888764333334444 45788899999999999999999876666899999984
No 179
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=22.70 E-value=2.9e+02 Score=30.09 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=53.0
Q ss_pred CCcceeecCccccHhH-h----hcCCCCCceecccc---hHHHHHHHHHHcC--CC---CCCCCCccEEEEEcCcchHHH
Q 011527 347 GKLRAICGGGRYDQLL-S----TFGGDDIPACGFGF---GDAVILELLKEKG--LL---PPLNHQVENIVCALDHNLQGA 413 (484)
Q Consensus 347 g~~~~i~~GGRYD~L~-~----~f~~~~~pavGfsi---gierl~~~l~e~~--~~---p~~~~~~~v~Vi~~~~~~~~~ 413 (484)
|....+++||.|+.-+ . ++-+.--|+.++.| .+|+.+..+.--| +. -....++|-++++.+--..++
T Consensus 59 GhwaELAGGGq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~ 138 (717)
T COG4981 59 GHWAELAGGGQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEE 138 (717)
T ss_pred CceeeecCCcccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHH
Confidence 4445789999998632 1 12111123333332 3454443331110 00 112346777777766545778
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCC---HHHHHHHHHH
Q 011527 414 ASMVATTLRGKGQSVDLVLESKP---LKWVFKRAAR 446 (484)
Q Consensus 414 a~~la~~Lr~~Gi~v~~~~~~~~---~~~~~~~a~~ 446 (484)
|.++.++|-.-|+.-- .+.+.+ +...++.|+.
T Consensus 139 A~ElI~~L~~~G~~yv-~fKPGtIeqI~svi~IAka 173 (717)
T COG4981 139 AVELIEELGDDGFPYV-AFKPGTIEQIRSVIRIAKA 173 (717)
T ss_pred HHHHHHHHhhcCceeE-EecCCcHHHHHHHHHHHhc
Confidence 8888888888888653 334444 4455666654
No 180
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=22.60 E-value=3.3e+02 Score=23.58 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=36.6
Q ss_pred EEEEEcCc--chHHHHHHHHHHHHHC-CCeEEEEeCCC------C-HHHHHHHHHHcCCCEEEEEcC
Q 011527 401 NIVCALDH--NLQGAASMVATTLRGK-GQSVDLVLESK------P-LKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 401 v~Vi~~~~--~~~~~a~~la~~Lr~~-Gi~v~~~~~~~------~-~~~~~~~a~~~gi~~~iiig~ 457 (484)
|+|+.-.+ ...+...++|..|++. |+.|.+|..+. . ..+..+. ...+.+||+|-.
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~--~~~ad~Vliv~S 67 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQ--IREADKVLIVCS 67 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHH--HhcCCEEEEEec
Confidence 55544333 2457789999999999 99998885432 1 2233222 567889988876
No 181
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=22.59 E-value=5.1e+02 Score=25.54 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=55.1
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCcee
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES-KPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQY 476 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~-~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~ 476 (484)
.|+| .........+..++.+|..-=-.+.+..++ -++++..+.|...+..-+|+|.++-...+-++|-.+-+|=..
T Consensus 98 KvlI-Tt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~ 174 (302)
T KOG2780|consen 98 KVLI-TTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTA 174 (302)
T ss_pred cEEE-EcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCce
Confidence 4444 444444456778888998876667776665 368999999999999999999876656677777777777433
No 182
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=22.05 E-value=5.7e+02 Score=22.76 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred EEeEEEEEcCCChh--hHHHHHHHHHHHHHHcCCCCCc---eEEEeCCHHHHHHHHHhCCCCchhhh
Q 011527 191 YQWNMDIIGVPAVT--AEAELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFG 252 (484)
Q Consensus 191 ~Q~g~eiig~~~~~--adaEvi~l~~~~l~~lgl~~~~---~~i~i~~~~il~~~l~~~g~~~~~~~ 252 (484)
.+.|+++.=....- ....+-..+.++|++.|++..+ |.++=|.+++++++-+.++++++...
T Consensus 22 ~~~Gf~~~Ls~~vP~~i~~~i~~~~~~~L~~~g~~~~~~~~wavHPGG~~ILd~v~~~L~L~~~~l~ 88 (151)
T PF02797_consen 22 GDTGFHFILSKEVPDLISDNIPPFVEDLLARHGLSDWDILFWAVHPGGRKILDAVEEALGLSPEQLR 88 (151)
T ss_dssp ETTEEEEEE-TTHHHHHHHHHHHHHHHHHHGGTCCSGGGSEEEEE-SSHHHHHHHHHHHTS-GGGGH
T ss_pred eCCeEEEEEhhHhHHHHHHHHHHHHHHHHhhhcccccccceeeecCChHHHHHHHHHHcCCCHHHHH
Confidence 34577777655532 2234667888889998886433 77888899999999999999886643
No 183
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.93 E-value=3.9e+02 Score=23.72 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=18.6
Q ss_pred cEEEEEcCcc-hHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHH
Q 011527 400 ENIVCALDHN-LQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRA 444 (484)
Q Consensus 400 ~v~Vi~~~~~-~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a 444 (484)
.|+|..++.+ ...-+.-+++.|++.|+.|...---.+.++..+.|
T Consensus 14 rvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 14 RVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA 59 (143)
T ss_pred eEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH
Confidence 4445444422 12223334455555555554332223344444444
No 184
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.82 E-value=82 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=27.0
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE 433 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~ 433 (484)
.+++|+-.+.....-.-++.+.|++.||.++++..
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 47888888765443455678999999999999854
No 185
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=21.80 E-value=2.7e+02 Score=25.09 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=34.4
Q ss_pred EEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHH---HHHHcCCCEEEEE
Q 011527 402 IVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFK---RAARINAQRLILV 455 (484)
Q Consensus 402 ~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~---~a~~~gi~~~iii 455 (484)
.|+.-+....+.+.+.+..|...|+..|+-.- .+++++..+ .++..|+.-+|.+
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~ 60 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAG 60 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34554555677888899999999988776543 344444444 4555777544443
No 186
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.13 E-value=3.2e+02 Score=27.41 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=39.6
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC--C--CHHHHHHHHHHcCCCEEEEEcCC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES--K--PLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~--~--~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
.|+.++..+. ....+++.|+.|.+.||++-+.+-. + .-...+++|++- ..+|.+-+.
T Consensus 193 ~D~tiiA~G~-mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t--~~IvT~EeH 253 (312)
T COG3958 193 SDLTIIATGV-MVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARET--GRIVTAEEH 253 (312)
T ss_pred CceEEEecCc-chHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhc--CcEEEEecc
Confidence 4788887553 5678999999999999999887542 2 234455566554 677777543
No 187
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=21.05 E-value=3.8e+02 Score=24.54 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCC-----------------CCHHHHHHHHHHcCCCEEEEEcC
Q 011527 411 QGAASMVATTLRGKGQSVDLVLES-----------------KPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 411 ~~~a~~la~~Lr~~Gi~v~~~~~~-----------------~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
+..+..+++.|.+.|+.|.+.-.+ .++.+..+.|+..++..+|-|=-
T Consensus 29 l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~ 92 (189)
T TIGR02883 29 LEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHL 92 (189)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEec
Confidence 567888999999999999765332 14678888899999998776643
No 188
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.88 E-value=4e+02 Score=24.10 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=33.5
Q ss_pred CccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 398 QVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 398 ~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
.+|.+|+.-++... ..++.+||+.|.+|...-........+.. -|...+-+.++
T Consensus 105 ~iD~~vLvSgD~DF---~~Lv~~lre~G~~V~v~g~~~~ts~~L~~----acd~FI~L~~~ 158 (160)
T TIGR00288 105 NIDAVALVTRDADF---LPVINKAKENGKETIVIGAEPGFSTALQN----SADIAIILGEE 158 (160)
T ss_pred CCCEEEEEeccHhH---HHHHHHHHHCCCEEEEEeCCCCChHHHHH----hcCeEEeCCCC
Confidence 46777766665433 44788999999999987533333333333 35556666654
No 189
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=20.75 E-value=3.5e+02 Score=26.59 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCCeeEEEecCeeeeCcCCCC----CccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~g----r~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~ 224 (484)
+.|.+..|+.++.|-...+.| |...++|.-+=+ .+++.. +-.++.+.|+.+||+.
T Consensus 43 pepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVil--KPsP~n---iq~lYL~SL~~lGId~ 101 (284)
T PF02091_consen 43 PEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVIL--KPSPDN---IQELYLESLEALGIDP 101 (284)
T ss_dssp SS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEE--ES--TT---HHHHHHHHHHHCT--C
T ss_pred CCCccccccccCCCCCCCccCCCchHhhhhheeEEEE--cCCCcc---HHHHHHHHHHHhCCCc
Confidence 459999999999995432222 667788876543 344433 4678899999999863
No 190
>PLN02532 asparagine-tRNA synthetase
Probab=20.68 E-value=63 Score=35.88 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=28.4
Q ss_pred eeEEEecCeeeeCcCC-CCCccceEEeEEEEEcCC
Q 011527 168 LKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 168 lk~yyig~vfR~e~~~-~gr~rEf~Q~g~eiig~~ 201 (484)
-|.|+||++||.|... .-+.-|||++++|+-..+
T Consensus 390 ~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d 424 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSE 424 (633)
T ss_pred CceEEEccceecCCCCCCcccccccceeeeehhcC
Confidence 5899999999999765 346899999999976543
No 191
>PLN03194 putative disease resistance protein; Provisional
Probab=20.67 E-value=5.2e+02 Score=24.05 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=39.4
Q ss_pred CCCccEEEEEcCcch-HHHHHHHHHHHHHCCCeEEEEeC----CCCHHHHHHHHHHcCCCE-EEEEcC
Q 011527 396 NHQVENIVCALDHNL-QGAASMVATTLRGKGQSVDLVLE----SKPLKWVFKRAARINAQR-LILVGT 457 (484)
Q Consensus 396 ~~~~~v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~~~~----~~~~~~~~~~a~~~gi~~-~iiig~ 457 (484)
..+.||+|-.-+.+. ..-+--+++.|+.+||+|-++.. +.++...+..|-+ ..+. ++|+.+
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIe-eSri~IvVfS~ 90 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR-NCKVGVAVFSP 90 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHH-hCeEEEEEECC
Confidence 446789887666664 34578899999999999988753 3345545554433 3444 445543
No 192
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=20.65 E-value=3.3e+02 Score=29.18 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=38.9
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC--C--CHHHHHHHHHHcCCCEEEEEcCC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES--K--PLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~--~--~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
.|+.|+.++. ....|++.++.|.+.||.+++.+-. + ..+...+.++ +...+|++-+.
T Consensus 341 ~DvtIva~G~-~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~--kt~~vvtvEE~ 401 (464)
T PRK11892 341 KDVTIVSFSI-GMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVK--KTNRLVTVEEG 401 (464)
T ss_pred CCEEEEEccH-HHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHH--hcCeEEEEeCC
Confidence 4888888875 4668999999999999999987432 1 2333444443 44567777543
No 193
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.45 E-value=6.8e+02 Score=23.10 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=38.3
Q ss_pred ccEEEEEcCcch-HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEE
Q 011527 399 VENIVCALDHNL-QGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLIL 454 (484)
Q Consensus 399 ~~v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~ii 454 (484)
..+++.+...+. .--..-++..|+.+|+.|...-.+-+.++..+.+.+.+...+.+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l 139 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL 139 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 356666665443 33356677889999999854334557888888888888886544
No 194
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.35 E-value=75 Score=26.57 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=25.1
Q ss_pred CccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe
Q 011527 398 QVENIVCALDHNLQGAASMVATTLRGKGQSVDLVL 432 (484)
Q Consensus 398 ~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~ 432 (484)
+.+++|+-.+.....-.-++.+.|+++||.++++.
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~ 87 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMD 87 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEEC
Confidence 35899998887654445668889999999999984
No 195
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=20.33 E-value=4e+02 Score=26.93 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=39.7
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe-CC---CCHHHHHHHHHHcCCCEEEEEcC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVL-ES---KPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~-~~---~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
.|+.|+.++. ....+++.|++|.+.||.+|+.+ +. -..+..++..++-| .+++|-+
T Consensus 201 ~DvTivtyg~-mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi~SvkKTg--R~viV~E 260 (324)
T COG0022 201 SDVTIVTYGA-MVHTALEAAEELEKEGISAEVIDLRTLSPLDKETIIASVKKTG--RLVIVHE 260 (324)
T ss_pred CceEEEEech-HHHHHHHHHHHHhhcCCCeEEEeccccCccCHHHHHHHHHhhC--cEEEEEe
Confidence 5777777764 35678899999999999999863 32 24566666666555 6777754
No 196
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=20.29 E-value=3.8e+02 Score=28.95 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=50.9
Q ss_pred HHHHHHHH-HHHHHhcCCcceEEEecCCccCCCceeceeEEEEe--c-CCCcceeecCcccc-HhHhhcCCC-CCceecc
Q 011527 302 AVADLKLL-FSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFD--R-DGKLRAICGGGRYD-QLLSTFGGD-DIPACGF 375 (484)
Q Consensus 302 ~~~~L~~l-~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~--~-~g~~~~i~~GGRYD-~L~~~f~~~-~~pavGf 375 (484)
++.+|..+ .++++.+|. ..+.|-|+..+ ||-.-+|++. + .|..-.|++-|=+. +++...|-+ +.++..|
T Consensus 393 s~~~L~~~l~~f~~~lG~-~~~RfrP~yfP----fTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~~~~~~~A~ 467 (494)
T PTZ00326 393 TLGDLIGTIREFFRRIGI-TKLRFKPAFNP----YTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGFPEDVTVIAW 467 (494)
T ss_pred CHHHHHHHHHHHHHhcCC-CceEEecCCCC----CCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCCCCcceEEEE
Confidence 34455543 356677776 34656544221 7866677753 2 23346788888899 888888753 3456778
Q ss_pred cchHHHHHHHH
Q 011527 376 GFGDAVILELL 386 (484)
Q Consensus 376 sigierl~~~l 386 (484)
++|+||+.-+.
T Consensus 468 GlGleRlaMi~ 478 (494)
T PTZ00326 468 GLSLERPTMIK 478 (494)
T ss_pred EecHHHHHHHH
Confidence 88999986553
No 197
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.02 E-value=5.9e+02 Score=24.93 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 376 GFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 376 sigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
..|+|+.+....+.| .+-++++- --.+++.++.+.++++|+..-......+..+.++.-.+..-.|+-++
T Consensus 105 ~~G~e~F~~~~~~aG--------vdgviipD--LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 105 HYGINKFIKKISQAG--------VKGLIIPD--LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred HhCHHHHHHHHHHcC--------CeEEEecC--CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 346788888877765 24444442 12356778888889999887776666654445544333333355555
Q ss_pred c
Q 011527 456 G 456 (484)
Q Consensus 456 g 456 (484)
.
T Consensus 175 S 175 (263)
T CHL00200 175 S 175 (263)
T ss_pred c
Confidence 4
Done!