Query 011527
Match_columns 484
No_of_seqs 223 out of 1368
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lc0_A Histidyl-tRNA synthetas 100.0 3.4E-87 1.2E-91 702.1 43.4 417 66-482 22-445 (456)
2 3net_A Histidyl-tRNA synthetas 100.0 4.4E-82 1.5E-86 666.9 39.1 407 69-484 8-457 (465)
3 4g84_A Histidine--tRNA ligase, 100.0 1.1E-79 3.8E-84 650.5 40.9 418 61-484 2-453 (464)
4 4g85_A Histidine-tRNA ligase, 100.0 1.5E-79 5.1E-84 656.9 41.5 413 66-484 60-506 (517)
5 1wu7_A Histidyl-tRNA synthetas 100.0 1.9E-78 6.5E-83 635.6 43.2 407 70-484 3-418 (434)
6 4e51_A Histidine--tRNA ligase; 100.0 1.9E-72 6.6E-77 593.1 41.2 402 69-484 28-451 (467)
7 3od1_A ATP phosphoribosyltrans 100.0 4.4E-72 1.5E-76 578.3 40.9 377 69-460 6-394 (400)
8 1htt_A Histidyl-tRNA synthetas 100.0 5.3E-73 1.8E-77 592.6 34.3 399 71-483 2-414 (423)
9 1h4v_B Histidyl-tRNA synthetas 100.0 2.3E-71 7.9E-76 579.9 42.3 400 72-484 2-413 (421)
10 1qe0_A Histidyl-tRNA synthetas 100.0 6.4E-66 2.2E-70 538.5 31.9 392 73-483 2-414 (420)
11 1z7m_A ATP phosphoribosyltrans 100.0 7.7E-64 2.6E-68 507.7 30.2 311 66-391 15-339 (344)
12 3rac_A Histidine-tRNA ligase; 100.0 4.2E-64 1.4E-68 514.3 23.4 326 51-390 6-367 (373)
13 2j3l_A Prolyl-tRNA synthetase; 100.0 1.9E-53 6.3E-58 460.6 21.6 397 75-483 35-557 (572)
14 2i4l_A Proline-tRNA ligase; al 100.0 1.3E-52 4.6E-57 441.6 18.1 372 73-484 53-454 (458)
15 1evl_A Threonyl-tRNA synthetas 100.0 3.5E-51 1.2E-55 424.5 26.0 350 74-483 17-383 (401)
16 1usy_A ATP phosphoribosyltrans 100.0 1.3E-51 4.3E-56 406.0 17.0 259 92-382 5-273 (275)
17 1hc7_A Prolyl-tRNA synthetase; 100.0 7.5E-47 2.5E-51 398.3 27.6 326 69-483 26-377 (477)
18 3a32_A Probable threonyl-tRNA 100.0 2.9E-49 1E-53 417.5 9.3 354 75-481 37-431 (471)
19 1nyr_A Threonyl-tRNA synthetas 100.0 1.5E-47 5.1E-52 419.0 20.7 356 75-483 259-631 (645)
20 1nj8_A Proline-tRNA synthetase 100.0 1.5E-45 5.1E-50 387.2 30.4 326 69-483 19-371 (459)
21 1qf6_A THRRS, threonyl-tRNA sy 100.0 4.9E-46 1.7E-50 405.5 27.5 350 74-483 258-624 (642)
22 3uh0_A Threonyl-tRNA synthetas 100.0 1.5E-44 5.2E-49 378.9 25.7 344 75-483 52-448 (460)
23 1nj1_A PROR, proline-tRNA synt 100.0 3.1E-44 1.1E-48 380.5 25.5 321 74-483 58-404 (501)
24 2zt5_A Glycyl-tRNA synthetase; 100.0 4E-41 1.4E-45 367.3 26.9 375 76-483 90-648 (693)
25 4hvc_A Bifunctional glutamate/ 100.0 4.4E-37 1.5E-41 324.7 31.3 330 69-484 43-405 (519)
26 1ati_A Glycyl-tRNA synthetase; 100.0 7.2E-38 2.5E-42 332.1 24.8 341 74-483 26-495 (505)
27 3ial_A Prolyl-tRNA synthetase; 100.0 4.7E-37 1.6E-41 323.7 24.5 327 69-483 36-398 (518)
28 1g5h_A Mitochondrial DNA polym 99.9 5.9E-28 2E-32 252.3 13.9 317 78-483 52-429 (454)
29 3ikl_A DNA polymerase subunit 99.9 5.2E-26 1.8E-30 235.0 24.1 306 77-483 93-439 (459)
30 2dq3_A Seryl-tRNA synthetase; 99.8 1.9E-20 6.7E-25 193.9 13.2 151 76-233 161-324 (425)
31 1ses_A Seryl-tRNA synthetase; 99.8 1.2E-19 4E-24 187.8 12.7 148 75-229 154-315 (421)
32 2dq0_A Seryl-tRNA synthetase; 99.8 3E-19 1E-23 186.1 12.0 151 75-233 181-344 (455)
33 2cja_A Seryl-tRNA synthetase; 99.7 1.9E-18 6.6E-23 181.8 10.2 148 74-223 218-407 (522)
34 3dsq_A Pyrrolysyl-tRNA synthet 99.7 2.9E-17 1E-21 161.7 12.6 139 89-230 72-210 (288)
35 3vbb_A Seryl-tRNA synthetase, 99.7 1.1E-16 3.8E-21 167.5 13.7 152 76-231 190-363 (522)
36 1wle_A Seryl-tRNA synthetase; 99.7 1.1E-16 3.9E-21 167.8 13.0 152 75-230 207-372 (501)
37 1nnh_A Asparaginyl-tRNA synthe 99.7 2.4E-16 8.3E-21 155.8 13.8 126 83-221 11-141 (294)
38 3err_A Fusion protein of micro 99.6 5.6E-16 1.9E-20 164.1 13.4 149 76-231 264-426 (536)
39 3lss_A Seryl-tRNA synthetase; 99.6 8.6E-16 2.9E-20 159.8 14.4 152 75-231 196-361 (484)
40 3qne_A Seryl-tRNA synthetase, 99.6 3.8E-15 1.3E-19 154.8 13.9 151 75-231 173-338 (485)
41 3qtc_A Pyrrolysyl-tRNA synthet 99.5 7.2E-14 2.5E-18 138.0 16.1 131 90-230 79-213 (290)
42 1v95_A Nuclear receptor coacti 99.4 4.6E-13 1.6E-17 114.6 8.2 88 396-483 6-97 (130)
43 3mf2_A BLL0957 protein; aminoa 99.3 2.3E-11 7.7E-16 120.5 13.7 150 77-232 54-233 (346)
44 1x54_A Asparaginyl-tRNA synthe 99.2 7.4E-11 2.5E-15 122.3 11.7 114 86-220 134-250 (434)
45 1wyd_A Hypothetical aspartyl-t 99.1 5E-10 1.7E-14 115.9 13.4 114 86-220 133-249 (429)
46 1n9w_A Aspartyl-tRNA synthetas 99.1 1.3E-10 4.4E-15 120.1 8.8 115 86-220 124-241 (422)
47 1eov_A ASPRS, aspartyl-tRNA sy 99.0 2E-09 6.8E-14 113.1 13.4 100 86-201 177-280 (487)
48 3a74_A Lysyl-tRNA synthetase; 98.9 2E-08 6.7E-13 105.6 14.2 103 86-201 173-276 (493)
49 1e1o_A Lysyl-tRNA synthetase, 98.7 1.4E-07 4.9E-12 99.2 14.4 103 86-201 182-285 (504)
50 3a5y_A GENX, putative lysyl-tR 98.7 1.6E-07 5.6E-12 94.2 13.6 120 85-220 34-158 (345)
51 3l4g_A Phenylalanyl-tRNA synth 98.6 5.3E-07 1.8E-11 94.2 14.1 134 88-223 225-401 (508)
52 2du3_A O-phosphoseryl-tRNA syn 98.5 2E-06 6.8E-11 90.3 15.2 80 142-223 180-260 (534)
53 3nem_A Aspartyl-tRNA synthetas 98.4 1.6E-06 5.4E-11 89.8 12.8 102 87-202 137-239 (438)
54 1b7y_A Phers, protein (phenyla 98.4 4.5E-06 1.5E-10 83.8 14.6 127 90-222 103-247 (350)
55 2xgt_A Asparaginyl-tRNA synthe 98.4 2.3E-06 7.9E-11 88.7 12.3 99 86-201 131-232 (435)
56 2du7_A O-phosphoseryl-tRNA syn 98.3 6.6E-06 2.2E-10 86.3 14.3 131 90-222 59-271 (549)
57 2rhq_A Phenylalanyl-tRNA synth 98.2 1.4E-05 4.8E-10 78.6 12.7 146 67-222 34-186 (294)
58 1c0a_A Aspartyl tRNA synthetas 98.1 2.1E-05 7.2E-10 84.3 14.0 101 87-201 138-240 (585)
59 2odr_B Phosphoseryl-tRNA synth 98.1 6.1E-05 2.1E-09 79.7 16.8 131 90-222 67-278 (648)
60 1l0w_A Aspartyl-tRNA synthetas 98.1 1.9E-05 6.5E-10 84.4 13.3 101 87-201 144-246 (580)
61 2odr_A Phosphoseryl-tRNA synth 98.1 6.3E-05 2.2E-09 79.7 16.8 131 90-222 67-278 (665)
62 3m4p_A Ehasnrs, asparaginyl-tR 98.1 1.5E-05 5.1E-10 82.9 12.0 100 87-201 156-256 (456)
63 2odr_D Phosphoseryl-tRNA synth 98.1 6.5E-05 2.2E-09 79.7 16.8 79 142-222 199-278 (685)
64 2odr_C Phosphoseryl-tRNA synth 98.1 7.1E-05 2.4E-09 79.7 16.7 131 90-222 67-278 (701)
65 3bju_A Lysyl-tRNA synthetase; 98.1 3.7E-05 1.3E-09 81.2 14.3 102 87-201 176-278 (521)
66 4ex5_A Lysine--tRNA ligase; st 98.0 4.6E-05 1.6E-09 80.3 14.4 102 87-201 204-306 (529)
67 3i7f_A Aspartyl-tRNA synthetas 98.0 3.2E-05 1.1E-09 81.7 12.1 100 87-200 244-345 (548)
68 4ah6_A Aspartate--tRNA ligase, 97.9 7.8E-05 2.7E-09 79.8 13.7 116 87-220 148-265 (617)
69 3ig2_A Phenylalanyl-tRNA synth 97.8 0.00024 8.2E-09 66.3 12.7 133 90-223 6-154 (213)
70 3ica_A Phenylalanyl-tRNA synth 97.7 0.00032 1.1E-08 65.5 12.2 133 90-223 6-154 (213)
71 3l4g_B Phenylalanyl-tRNA synth 97.6 0.00039 1.3E-08 74.7 13.1 151 67-223 373-525 (589)
72 2rhq_B Phenylalanyl-tRNA synth 97.3 0.00072 2.5E-08 75.1 10.7 150 67-222 473-634 (795)
73 3pco_A Phenylalanyl-tRNA synth 97.2 0.00043 1.5E-08 68.6 6.8 138 70-220 91-234 (327)
74 1b7y_B Phers, protein (phenyla 97.0 0.0025 8.7E-08 70.4 10.9 144 67-222 468-622 (785)
75 3cmq_A Phenylalanyl-tRNA synth 95.7 0.076 2.6E-06 54.3 12.1 98 90-198 50-164 (415)
76 3pco_B Phenylalanyl-tRNA synth 95.4 0.06 2.1E-06 59.6 10.8 127 93-222 494-630 (795)
77 1wyd_A Hypothetical aspartyl-t 66.0 3.9 0.00014 41.7 3.8 34 356-389 378-411 (429)
78 3gk0_A PNP synthase, pyridoxin 54.8 37 0.0012 32.1 7.8 56 398-455 116-183 (278)
79 3o6c_A PNP synthase, pyridoxin 47.4 34 0.0012 32.1 6.3 42 412-455 111-152 (260)
80 1m5w_A Pyridoxal phosphate bio 46.2 72 0.0025 29.5 8.3 45 410-456 112-156 (243)
81 1x54_A Asparaginyl-tRNA synthe 42.4 12 0.00042 38.1 2.8 32 357-388 384-415 (434)
82 4grd_A N5-CAIR mutase, phospho 38.3 2E+02 0.0069 25.1 10.1 57 398-454 12-73 (173)
83 3lp6_A Phosphoribosylaminoimid 36.3 2.2E+02 0.0075 24.9 9.6 57 399-455 8-69 (174)
84 3kuu_A Phosphoribosylaminoimid 35.6 2.3E+02 0.0077 24.8 9.5 57 399-455 13-74 (174)
85 3a5y_A GENX, putative lysyl-tR 34.1 13 0.00045 36.6 1.3 30 358-389 299-331 (345)
86 1xmp_A PURE, phosphoribosylami 30.0 2.8E+02 0.0094 24.2 9.5 55 400-454 13-72 (170)
87 3trh_A Phosphoribosylaminoimid 29.4 2.3E+02 0.008 24.6 8.4 56 400-455 8-68 (169)
88 1y81_A Conserved hypothetical 29.0 1.2E+02 0.0039 25.2 6.4 55 398-458 69-123 (138)
89 3qay_A Endolysin; amidase A/B 28.6 1.6E+02 0.0055 25.6 7.6 46 411-456 32-85 (180)
90 3nem_A Aspartyl-tRNA synthetas 28.4 27 0.00092 35.6 2.6 19 370-388 401-419 (438)
91 1n9w_A Aspartyl-tRNA synthetas 27.7 25 0.00087 35.6 2.3 20 370-389 385-404 (422)
92 1c0a_A Aspartyl tRNA synthetas 27.5 25 0.00084 37.3 2.2 32 358-389 514-545 (585)
93 3ihk_A Thiamin pyrophosphokina 27.1 1.5E+02 0.0051 26.8 7.2 89 351-457 5-97 (218)
94 2d59_A Hypothetical protein PH 26.9 1.1E+02 0.0039 25.4 6.0 50 398-450 77-126 (144)
95 1l0w_A Aspartyl-tRNA synthetas 26.7 26 0.00089 37.1 2.2 32 358-389 508-539 (580)
96 1eov_A ASPRS, aspartyl-tRNA sy 26.5 29 0.001 35.8 2.5 32 358-389 438-469 (487)
97 3i7f_A Aspartyl-tRNA synthetas 26.1 31 0.0011 36.2 2.6 47 339-388 462-529 (548)
98 2jz2_A SSL0352 protein; SH3-li 25.5 29 0.00098 25.0 1.5 27 335-363 20-46 (66)
99 3ju3_A Probable 2-oxoacid ferr 24.0 96 0.0033 25.0 4.8 57 399-457 14-73 (118)
100 2cxh_A Probable BRIX-domain ri 23.8 1.6E+02 0.0056 26.7 6.7 73 400-473 35-108 (217)
101 3pzy_A MOG; ssgcid, seattle st 23.8 1.5E+02 0.0053 25.3 6.4 59 399-457 8-75 (164)
102 3oow_A Phosphoribosylaminoimid 23.8 3.6E+02 0.012 23.4 9.5 56 400-455 7-67 (166)
103 3bju_A Lysyl-tRNA synthetase; 23.7 35 0.0012 35.5 2.5 19 370-388 474-492 (521)
104 12as_A Asparagine synthetase; 23.7 2.2E+02 0.0076 27.5 7.8 127 88-219 10-146 (330)
105 1u11_A PURE (N5-carboxyaminoim 23.7 3.8E+02 0.013 23.6 9.7 55 400-454 23-82 (182)
106 2ywx_A Phosphoribosylaminoimid 23.2 3.5E+02 0.012 23.2 8.3 50 401-450 2-53 (157)
107 2ibo_A Hypothetical protein SP 22.9 2E+02 0.0069 22.8 6.3 56 399-455 5-73 (104)
108 2jvf_A De novo protein M7; tet 22.7 1.1E+02 0.0037 22.6 4.2 31 201-233 57-87 (96)
109 3ors_A N5-carboxyaminoimidazol 22.5 3.8E+02 0.013 23.1 9.5 56 400-455 5-65 (163)
110 2l9s_A PHD finger protein 12; 22.0 18 0.00062 24.3 -0.1 31 5-35 7-37 (45)
111 2yxb_A Coenzyme B12-dependent 22.0 2.1E+02 0.0072 24.3 6.9 56 400-455 20-76 (161)
112 1x59_A Histidyl-tRNA synthetas 21.9 36 0.0012 25.4 1.5 17 66-82 56-72 (73)
113 3lzd_A DPH2; diphthamide biosy 21.9 3.6E+02 0.012 26.6 9.3 77 375-461 39-119 (378)
114 1jwq_A N-acetylmuramoyl-L-alan 21.7 1.8E+02 0.0062 25.3 6.5 45 411-455 31-79 (179)
115 1o4v_A Phosphoribosylaminoimid 20.9 4.3E+02 0.015 23.2 9.6 55 400-454 15-74 (183)
116 1yqh_A DUF77, IG hypothetical 20.5 3.3E+02 0.011 21.7 7.5 57 399-455 10-79 (109)
117 3h16_A TIR protein; bacteria T 20.5 96 0.0033 26.1 4.3 58 397-455 19-80 (154)
118 3mel_A Thiamin pyrophosphokina 20.2 1.9E+02 0.0064 26.2 6.5 21 437-457 80-101 (222)
No 1
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=3.4e-87 Score=702.10 Aligned_cols=417 Identities=50% Similarity=0.912 Sum_probs=371.7
Q ss_pred cccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEee
Q 011527 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (484)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~L 145 (484)
+.++|+.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+++.++||+|.|++|+.++|
T Consensus 22 ~~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~L 101 (456)
T 3lc0_A 22 MQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVAL 101 (456)
T ss_dssp ---CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEE
T ss_pred hhhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEec
Confidence 77889999999999999999999999999999999999999999999999999999877888889999999999999999
Q ss_pred CCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCC
Q 011527 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITAS 225 (484)
Q Consensus 146 RpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~ 225 (484)
|||+|+|+||+++++....++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|+.+.
T Consensus 102 Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~~ 181 (456)
T 3lc0_A 102 RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSK 181 (456)
T ss_dssp CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999877678899999999999999999999999999999999999999999999999999999999423
Q ss_pred ceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhh------
Q 011527 226 DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE------ 299 (484)
Q Consensus 226 ~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~------ 299 (484)
++.|+|||+++++++++.+|++++.+..++.+++++++.+++++++.|..++++++.++.|++++..+.++.+.
T Consensus 182 ~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~~ 261 (456)
T 3lc0_A 182 DVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEE 261 (456)
T ss_dssp TEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCTT
T ss_pred ceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhHH
Confidence 79999999999999999999999999999999999999999999999999999999999888887665444332
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCC-CCceecccch
Q 011527 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGD-DIPACGFGFG 378 (484)
Q Consensus 300 ~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~-~~pavGfsig 378 (484)
.+++++|++++++|+.+|+..++.|||+++||++||||+|||++...|...+||+|||||+|++.||++ +.||||||+|
T Consensus 262 ~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~PavGFaig 341 (456)
T 3lc0_A 262 HEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPCAGFGFG 341 (456)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCCEEEEEeE
Confidence 356999999999999999988899999999999999999999997666778999999999999999987 7999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 379 DAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 379 ierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
+|||+.+|.+.+..++...+++++|++++++...+++++++.||++|++|++++.+.++++++++|++.|++|+||+|++
T Consensus 342 ~eRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ga~~vviiGe~ 421 (456)
T 3lc0_A 342 DCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPE 421 (456)
T ss_dssp SSHHHHHHHHTTCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTTEEEEEEECHH
T ss_pred HHHHHHHHHhcCCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcCCCEEEEECCc
Confidence 99999999987766554456899999999888899999999999999999999888899999999999999999999999
Q ss_pred ccccCeEEEEECCCCceeeeccCc
Q 011527 459 EWQKGMVGVKILSSGEQYEIKLDE 482 (484)
Q Consensus 459 e~~~~~v~vk~~~~~~~~~v~~~e 482 (484)
|+++|+|+||||.+|+|.+++.++
T Consensus 422 E~~~g~v~vK~l~tgeQ~~~~~~~ 445 (456)
T 3lc0_A 422 EWERGEVQVKMLREGTGKEEGGAE 445 (456)
T ss_dssp HHHTTEEEEEECC-----------
T ss_pred hhcCCeEEEEECCCCCeEEecccc
Confidence 999999999999999999887765
No 2
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=4.4e-82 Score=666.94 Aligned_cols=407 Identities=27% Similarity=0.459 Sum_probs=358.1
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccc-eEEEEeC---------
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR--------- 138 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~-~~~~~D~--------- 138 (484)
.|+++++|+||+||+|+++.++++|++.++++|++|||++|.||+||+.++|.++ | +..++ ||+|+|+
T Consensus 8 ~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 8 DKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQGDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp -CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC--CBEEEEEEEC--------
T ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CCCccceEEEeccccccccccc
Confidence 4677899999999999999999999999999999999999999999999999997 7 44677 9999998
Q ss_pred ------CCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhh--HHHHH
Q 011527 139 ------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTA--EAELI 210 (484)
Q Consensus 139 ------~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~a--daEvi 210 (484)
+|+.++||||+|+|+||+++++....++|+|+||+|+|||+|+||.||+|||+|+|+|+||.+++.+ |+|+|
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi 165 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMP 165 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHH
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHH
Confidence 3899999999999999999998765678999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 011527 211 SSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVL 290 (484)
Q Consensus 211 ~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~ 290 (484)
.++.++|+.||++ +++|+|||+++++++++.+|+++++...++.++|++++.++++++..|.+.|++.+..+.+..++
T Consensus 166 ~l~~~~l~~lgl~--~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~ 243 (465)
T 3net_A 166 AIITEIFEAVNIG--DFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFV 243 (465)
T ss_dssp HHHHHHHHHHTCS--CEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--ceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999997 79999999999999999999999888899999999999888999999999999998888888777
Q ss_pred cCC-C----hhhh------------hHHHHHHHHHHHHHHHhcCCcce----EEEecCCccCCCceeceeEEEEecC-CC
Q 011527 291 SIK-S----LTEL------------EGEAVADLKLLFSLAEKFGYSDW----IQFDASVVRGLAYYTGIVFECFDRD-GK 348 (484)
Q Consensus 291 ~~~-~----~~~l------------~~~~~~~L~~l~~~l~~~g~~~~----i~~Dl~l~r~~~YYtG~vFe~~~~~-g~ 348 (484)
... + ++.+ ..+++++|++++ |+.+ +..+ ++||++++||++||||+|||++..+ |.
T Consensus 244 ~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~--l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~ 320 (465)
T 3net_A 244 KIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVI--TGVR-NLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEA 320 (465)
T ss_dssp TCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHHH-HTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCGG
T ss_pred HhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHH--HHHh-cccccCceEEEccCccCCCcccCceEEEEEECCCCc
Confidence 543 1 1111 145677777776 5555 4346 9999999999999999999999864 23
Q ss_pred cceeecCccccHhHhhc-CCCCCceecccchHHHHHHHHHHcCCCCC-CCCCccEEEEEcCcchHHHHHHHHHHHHHCCC
Q 011527 349 LRAICGGGRYDQLLSTF-GGDDIPACGFGFGDAVILELLKEKGLLPP-LNHQVENIVCALDHNLQGAASMVATTLRGKGQ 426 (484)
Q Consensus 349 ~~~i~~GGRYD~L~~~f-~~~~~pavGfsigierl~~~l~e~~~~p~-~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi 426 (484)
..+||+|||||+|++.| |++ .||||||||+||++.+|.++|.+|. +.+|++|+|++++++...+|.+++++||++|+
T Consensus 321 ~~~i~~GGRYD~L~~~f~g~~-~pavGfaiGieRli~~L~e~g~~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi 399 (465)
T 3net_A 321 LGSICSGGRYEELVGTFIGEK-MPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGL 399 (465)
T ss_dssp GCCSSEEEEESSSSGGGTCSC-CCEEEEEEEHHHHHHHHHHTTSSCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTC
T ss_pred cceecccccHHHHhhhhcCCC-CceeeeeccHHHHHHHHHHcCCCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCC
Confidence 46999999999999966 765 9999999999999999999988875 67889999999998888999999999999999
Q ss_pred eEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccC-eEEEEECCCCceeeeccCcCC
Q 011527 427 SVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKG-MVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 427 ~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~-~v~vk~~~~~~~~~v~~~elv 484 (484)
+|++++.+.++++++++|++.|+||+|+||++ +++| +|+||++.+++|.+|++++++
T Consensus 400 ~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~ 457 (465)
T 3net_A 400 NVITNFEKRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLA 457 (465)
T ss_dssp CEEECCSCCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHH
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHH
Confidence 99999888899999999999999999999999 8899 999999999999999999863
No 3
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-79 Score=650.46 Aligned_cols=418 Identities=25% Similarity=0.475 Sum_probs=358.2
Q ss_pred CCCCCcccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCC
Q 011527 61 PSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGN 140 (484)
Q Consensus 61 ~~~~~~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G 140 (484)
|..+.++++++.++.|+||+||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+. .++||+|.|++|
T Consensus 2 p~~~~~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~-~~~~y~f~D~~g 80 (464)
T 4g84_A 2 PGSEFELRRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGG 80 (464)
T ss_dssp -----------CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-----CCCBBCCCSS
T ss_pred CchhhhHhhccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC-cceeEEEECCCC
Confidence 4445578888889999999999999999999999999999999999999999999999999887765 678999999999
Q ss_pred CeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC--CCCCccceEEeEEEEEcCCC-hhhHHHHHHHHHHHH
Q 011527 141 RRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA-VTAEAELISSIITFF 217 (484)
Q Consensus 141 ~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~--~~gr~rEf~Q~g~eiig~~~-~~adaEvi~l~~~~l 217 (484)
+.++||||+|+|+||+++++. ..|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|
T Consensus 81 ~~l~LRPd~T~~~aR~~~~~~---~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l 157 (464)
T 4g84_A 81 ELLSLRYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEIL 157 (464)
T ss_dssp CCEEECSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred CEEEeCCcCcHHHHHHHHhcC---CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHH
Confidence 999999999999999999864 359999999999999998 45799999999999999754 568999999999999
Q ss_pred HHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHH-HhcCCCHHHHHHHHHHccCC-Ch
Q 011527 218 KRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIK-SL 295 (484)
Q Consensus 218 ~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L-~~~g~~~~~~~~l~~l~~~~-~~ 295 (484)
+.+|++ ++.++|||+++++++++.++++++.+..++..++++++.+++++.+.+ ...+++++.++.+..+.... ..
T Consensus 158 ~~lgl~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~ 235 (464)
T 4g84_A 158 SSLQIG--DFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGV 235 (464)
T ss_dssp HHHTCC--CEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESH
T ss_pred HHhCCC--CcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCc
Confidence 999997 799999999999999999999999999999999999999999887765 56788888888887765432 11
Q ss_pred h--------------hhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CC--------ccee
Q 011527 296 T--------------ELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GK--------LRAI 352 (484)
Q Consensus 296 ~--------------~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~--------~~~i 352 (484)
+ ....+++++|+.+.++++.+|+..+|.+|++++||++||||+|||++... +. ..+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i 315 (464)
T 4g84_A 236 SLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSV 315 (464)
T ss_dssp HHHHHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEE
T ss_pred hHHHHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCccccee
Confidence 1 11256788999999999999998889999999999999999999998532 21 1489
Q ss_pred ecCccccHhHhhcC--CCCCceecccchHHHHHHHHHHcCC-CC--CCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCe
Q 011527 353 CGGGRYDQLLSTFG--GDDIPACGFGFGDAVILELLKEKGL-LP--PLNHQVENIVCALDHNLQGAASMVATTLRGKGQS 427 (484)
Q Consensus 353 ~~GGRYD~L~~~f~--~~~~pavGfsigierl~~~l~e~~~-~p--~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~ 427 (484)
|+|||||+|++.|+ +++.||||||||+||++.+|.+.+. ++ ++..+++|+|++.+++...+|+++++.||++|++
T Consensus 316 ~~GGRYD~L~~~~~~~g~~~pavGfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ 395 (464)
T 4g84_A 316 AAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIK 395 (464)
T ss_dssp EEEEECCSTGGGTSTTCCCCCEEEEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCC
T ss_pred ccCCchhHHHHHhccCCCCCCCccccccHHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCc
Confidence 99999999999995 6789999999999999999987632 22 3455789999999988899999999999999999
Q ss_pred EEEEeC-CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcCC
Q 011527 428 VDLVLE-SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 428 v~~~~~-~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
|++++. +.++++++++|++.|++|+||||++|+++|+|+||||.+|+|.+|+++||+
T Consensus 396 ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv 453 (464)
T 4g84_A 396 AELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLV 453 (464)
T ss_dssp EECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHH
T ss_pred EEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHH
Confidence 999864 458999999999999999999999999999999999999999999999874
No 4
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.5e-79 Score=656.87 Aligned_cols=413 Identities=25% Similarity=0.478 Sum_probs=358.5
Q ss_pred cccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEee
Q 011527 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (484)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~L 145 (484)
+.+.++.+++|+||+||+|++++++++|++.++++|++|||++|.||+||+.++|.+++|+. .+.||+|.|++|+.++|
T Consensus 60 ~~~~~~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~-~~~my~f~D~~g~~l~L 138 (517)
T 4g85_A 60 ESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLSL 138 (517)
T ss_dssp --CCCCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC-------CSCBBCCTTSCCEEE
T ss_pred ccccceeeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC-cceeEEEECCCCCEEEe
Confidence 45667889999999999999999999999999999999999999999999999999888875 67899999999999999
Q ss_pred CCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC--CCCCccceEEeEEEEEcCCC-hhhHHHHHHHHHHHHHHcCC
Q 011527 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA-VTAEAELISSIITFFKRIGI 222 (484)
Q Consensus 146 RpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~--~~gr~rEf~Q~g~eiig~~~-~~adaEvi~l~~~~l~~lgl 222 (484)
|||+|+|+||+++++.. .|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.||+
T Consensus 139 RPd~T~~~aR~~~~~~~---~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl 215 (517)
T 4g85_A 139 RYDLTVPFARYLAMNKL---TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI 215 (517)
T ss_dssp CSCSHHHHHHHHHHTTC---SCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCcHHHHHHHHhCCC---CCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcC
Confidence 99999999999998743 59999999999999998 56999999999999999754 56899999999999999999
Q ss_pred CCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHH-HhcCCCHHHHHHHHHHccCC-Chh---h
Q 011527 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIK-SLT---E 297 (484)
Q Consensus 223 ~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L-~~~g~~~~~~~~l~~l~~~~-~~~---~ 297 (484)
. ++.++|||+++++++++.++++++.+..++..++++++.+++++.+.+ ...+++++.++.+..+.... ..+ .
T Consensus 216 ~--~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 293 (517)
T 4g85_A 216 G--DFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQ 293 (517)
T ss_dssp C--CEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHH
T ss_pred C--cccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Confidence 7 799999999999999999999999999999999999999999887765 67888888888887765443 111 1
Q ss_pred -----------hhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CC--------cceeecCcc
Q 011527 298 -----------LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GK--------LRAICGGGR 357 (484)
Q Consensus 298 -----------l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~--------~~~i~~GGR 357 (484)
...+++++|+.++++++.+|+..+|.||++++||++||||+|||++..+ +. ..+||+|||
T Consensus 294 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGR 373 (517)
T 4g85_A 294 LLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGR 373 (517)
T ss_dssp HHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEE
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCc
Confidence 1146788999999999999998899999999999999999999998532 11 247999999
Q ss_pred ccHhHhhc--CCCCCceecccchHHHHHHHHHHcC---CCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe
Q 011527 358 YDQLLSTF--GGDDIPACGFGFGDAVILELLKEKG---LLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVL 432 (484)
Q Consensus 358 YD~L~~~f--~~~~~pavGfsigierl~~~l~e~~---~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~ 432 (484)
||+|++.| +|+++|||||++|+|||+.+|.+.+ ..+.+..+++|+|++.+++...+|+++++.||++||+|++++
T Consensus 374 YD~Lv~~f~~~G~~~pavGfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~ 453 (517)
T 4g85_A 374 YDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY 453 (517)
T ss_dssp CHHHHHTTSSSCCCCCEEEEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECS
T ss_pred hhHHHHHhccCCCCCCcccccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 99999999 4678999999999999999998753 234446678999999999889999999999999999999986
Q ss_pred C-CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcCC
Q 011527 433 E-SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 433 ~-~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
. +.++++++++|++.|++|+||||++|+++|+|+||||.+|+|.+|+++||+
T Consensus 454 ~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv 506 (517)
T 4g85_A 454 KKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLV 506 (517)
T ss_dssp SSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHH
Confidence 5 458999999999999999999999999999999999999999999998864
No 5
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.9e-78 Score=635.58 Aligned_cols=407 Identities=36% Similarity=0.672 Sum_probs=372.6
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCC
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~ 149 (484)
.+..++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+.+.++||+|+|++|+.++||||+
T Consensus 3 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~ 82 (434)
T 1wu7_A 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEA 82 (434)
T ss_dssp CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCS
T ss_pred ccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCC
Confidence 35678999999999999999999999999999999999999999999999998788888899999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCc-eE
Q 011527 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD-VG 228 (484)
Q Consensus 150 T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~-~~ 228 (484)
|+++||+++++ ...++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++..+|+|++.++.++|++||++ + +.
T Consensus 83 t~~~aR~~~~~-~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~--~~~~ 159 (434)
T 1wu7_A 83 TPSTVRMVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ--DIYE 159 (434)
T ss_dssp HHHHHHHHTTC-TTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT--TSEE
T ss_pred hHHHHHHHHhc-CCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCC--CceE
Confidence 99999999988 43368999999999999999999999999999999999999999999999999999999995 6 99
Q ss_pred EEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccC-CChhhhh------HH
Q 011527 229 FRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI-KSLTELE------GE 301 (484)
Q Consensus 229 i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~-~~~~~l~------~~ 301 (484)
+++||+++++++++.+| ++++. .++.++++.++..++.++..|...+++.+..+.+.+++.. ..++.+. .+
T Consensus 160 i~l~~~g~~~~~~~~~g-~~~~~-~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (434)
T 1wu7_A 160 IRINSRKIMEEIIGGMT-SSDPF-SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSE 237 (434)
T ss_dssp EEEEEHHHHHHHHHTTC-SSCHH-HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTTCCCH
T ss_pred EEECChhhHHHHHHHhC-cHhHH-HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHhhHHH
Confidence 99999999999999877 78777 8888999988888888888888889998777777777643 2333343 47
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHH
Q 011527 302 AVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAV 381 (484)
Q Consensus 302 ~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigier 381 (484)
++++++++.++++.+|+. +|++|++++|+++||||++|+++..+|..++||+|||||+|++.||++..||+|||||+||
T Consensus 238 ~~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~Gf~igveR 316 (434)
T 1wu7_A 238 EIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAV 316 (434)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHcCCC-EEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeEEEEEcHHH
Confidence 889999999999999986 7999999999999999999999975567789999999999999998888999999999999
Q ss_pred HHHHHHHcCCC-CCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCcc
Q 011527 382 ILELLKEKGLL-PPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEW 460 (484)
Q Consensus 382 l~~~l~e~~~~-p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~ 460 (484)
++.++.+++.+ |. +|++|+|++++++...+|.+++++||++|++|++++.++++++++++|++.|+|++|+||++|+
T Consensus 317 l~~~l~e~~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~~~~iiiG~~e~ 394 (434)
T 1wu7_A 317 ISLLLKRENVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDL 394 (434)
T ss_dssp HHHHHHHTTCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSEEEEEEHHHH
T ss_pred HHHHHHhcCCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCEEEEECchhh
Confidence 99999998876 55 5789999999888889999999999999999999988889999999999999999999999999
Q ss_pred ccCeEEEEECCCCceeeeccCcCC
Q 011527 461 QKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 461 ~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
++|+|+||++.++++.+|++++++
T Consensus 395 ~~g~v~vk~~~~~~~~~v~~~el~ 418 (434)
T 1wu7_A 395 ERGVVTIRNMYTGSQENVGLDSVV 418 (434)
T ss_dssp HTTEEEEEETTTCCEEEEEGGGHH
T ss_pred hcCeEEEEECCCCCeEEEcHHHHH
Confidence 999999999999999999999863
No 6
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1.9e-72 Score=593.05 Aligned_cols=402 Identities=28% Similarity=0.435 Sum_probs=322.6
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCC-CCeEe
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG-NRRVA 144 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~-G~~l~ 144 (484)
+|+.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.++.|+. +.++||+|.|++ |+.++
T Consensus 28 ~~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~ 107 (467)
T 4e51_A 28 KLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLT 107 (467)
T ss_dssp --CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEE
T ss_pred hhcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEE
Confidence 46679999999999999999999999999999999999999999999999999876872 578999999999 99999
Q ss_pred eCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCC
Q 011527 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (484)
Q Consensus 145 LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~ 224 (484)
||||+|+++||+++++....++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.||++
T Consensus 108 LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~- 186 (467)
T 4e51_A 108 LRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLT- 186 (467)
T ss_dssp ECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCC-
T ss_pred eCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999987664478999999999999999999999999999999999999999999999999999999997
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhh-ccCCHHHHHHHHHh-----cCCCHHHHHHHHHHccCCChhhh
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI-EKLPLDVIKNDLKS-----AGMSEAAIEELLRVLSIKSLTEL 298 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~-~~~~~~~l~~~L~~-----~g~~~~~~~~l~~l~~~~~~~~l 298 (484)
+++|+|||++..+... ..+..+...+... +..+.+. ++.|.. +.........++.-. +.-.+.+
T Consensus 187 -~~~i~in~~g~~~~~~-------~~~~~l~~~l~~~~~~l~~~~-~~~l~~~~l~~ld~k~~~~~~~l~~a-~~l~~~l 256 (467)
T 4e51_A 187 -GIKLEINSLGLAEERA-------AHRVELIKYLEQHADKLDDDA-QRRLYTNPLRVLDTKNPALQEIVRNA-PKLIDFL 256 (467)
T ss_dssp -CEEEEEEECCCHHHHH-------HHHHHHHHHHHTTGGGCCHHH-HHHHTTCTHHHHTCCCGGGHHHHHTS-CCGGGGC
T ss_pred -ceEEEEeCCCchhhhH-------HHHHHHHHHHHHHHhccCHHH-HHHHHhchHHHhhccchhHHHHHhhh-HHHHHhh
Confidence 7999999965432110 0001111111100 0111111 111100 000000011111100 0112334
Q ss_pred hHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCceecccc
Q 011527 299 EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPACGFGF 377 (484)
Q Consensus 299 ~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pavGfsi 377 (484)
..+++++++.+.++|+.+|++ +.+|++++||++||||+||+++... |...+||+|||||+|++.||+++.|||||++
T Consensus 257 ~~~~~~~l~~l~~~L~~~gi~--~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~ 334 (467)
T 4e51_A 257 GDVSRAHFEGLQRLLKANNVP--FTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAM 334 (467)
T ss_dssp CHHHHHHHHHHHHHHHHTTCC--EEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCe--EEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehH
Confidence 467788999999999999987 9999999999999999999999743 5557999999999999999988899999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC----CCCHHHHHHHHHHcCCCEEE
Q 011527 378 GDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE----SKPLKWVFKRAARINAQRLI 453 (484)
Q Consensus 378 gierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~----~~~~~~~~~~a~~~gi~~~i 453 (484)
|+||++.+|.+.+.+|. .+|.+|+|++++++...+|.++++.||++|++|++++. +.++++++++|++.|+||+|
T Consensus 335 gleRl~~~l~~~~~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~i 413 (467)
T 4e51_A 335 GIERILELLKEEHLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAV 413 (467)
T ss_dssp EHHHHHHHHHHTTCCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhcCCccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEE
Confidence 99999999998876444 56789999999988888999999999999999999988 78999999999999999999
Q ss_pred EEcCCccccCeEEEEECCC-C------ceeeeccCcCC
Q 011527 454 LVGTTEWQKGMVGVKILSS-G------EQYEIKLDELE 484 (484)
Q Consensus 454 iig~~e~~~~~v~vk~~~~-~------~~~~v~~~elv 484 (484)
|||++|+++|+|+||++.+ + +|.+|++++++
T Consensus 414 iiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv 451 (467)
T 4e51_A 414 IFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLT 451 (467)
T ss_dssp EECHHHHHHTEEEEEEC---------CCCEEEEGGGHH
T ss_pred EECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHH
Confidence 9999999999999999999 8 99999998863
No 7
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=4.4e-72 Score=578.33 Aligned_cols=377 Identities=25% Similarity=0.363 Sum_probs=324.2
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCC
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPE 148 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD 148 (484)
+++.+++|+|++||+|++++++++|++.++++|++|||++|.||+||+.++|.++ |+.+.++||+|.|++|+.++||||
T Consensus 6 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g~~~~~~my~f~D~~g~~l~LRpd 84 (400)
T 3od1_A 6 KPFMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-SAILDQQLFKLLDQQGNTLVLRPD 84 (400)
T ss_dssp CCCTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-SSSCGGGSCEEECTTSCEEEECSC
T ss_pred hhhcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccceEEEECCCCCEEEECCC
Confidence 3456899999999999999999999999999999999999999999999999875 666789999999999999999999
Q ss_pred ChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceE
Q 011527 149 LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVG 228 (484)
Q Consensus 149 ~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~ 228 (484)
+|+|+||+++++....++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++++.+|++ +++
T Consensus 85 ~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~--~~~ 162 (400)
T 3od1_A 85 MTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS--EFK 162 (400)
T ss_dssp SHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC--SEE
T ss_pred CHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC--ceE
Confidence 999999999998766678999999999999999999999999999999999999999999999999999999997 799
Q ss_pred EEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC-Ch-----------h
Q 011527 229 FRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SL-----------T 296 (484)
Q Consensus 229 i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~-~~-----------~ 296 (484)
|+|||+++++++++.++++++.+..++.++++.+ ...+++.+..++++++..+.|..++... +. +
T Consensus 163 i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~---~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~ 239 (400)
T 3od1_A 163 VAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKN---YVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQT 239 (400)
T ss_dssp EEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTC---HHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCS
T ss_pred EEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---hhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcC
Confidence 9999999999999999999988888888777754 4566777788899988888887776432 11 1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceeccc
Q 011527 297 ELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFG 376 (484)
Q Consensus 297 ~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs 376 (484)
....+++++|+++.++|+.+|+..++.|||+++||++||||+|||++.+ +...+||+|||||+|++.||++ .||||||
T Consensus 240 ~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~-~~g~~i~~GGRYD~L~~~fG~~-~pavGfa 317 (400)
T 3od1_A 240 EKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGN-RLGVPLCSGGRYDELLSKFHRP-AQATGFG 317 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEET-TCSSEEEEEEECTTHHHHTTCC-CCEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEEC-CCCCeeecccccchhhhccCCC-CCEEEEE
Confidence 2236789999999999999999888999999999999999999999985 4446999999999999999875 9999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 377 FGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 377 igierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
+|+|||+.++.+.+..+. ..+++|+ ++++...+++++|++||++|++|+++..+.. +.. +|...|+..++++.
T Consensus 318 iglerL~~~l~~~~~~~~---~~~v~v~-~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~-~~~--~~~~~~~~~~~~~~ 390 (400)
T 3od1_A 318 VRIDLLVEALNGEIISNG---HEQTCIL-FSNERRFEAIELARKKRANGEAVVLQDLAGV-TDV--DAMSSNYQDVIYCI 390 (400)
T ss_dssp EEHHHHHHHHCC---------CCCEEEE-ECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC-SCH--HHHHTTSSEEEEEC
T ss_pred eeHHHHHHHHHhcCCCCC---CCeEEEE-ECcHHHHHHHHHHHHHHHCCCEEEEEecCCh-hHH--HHHHcCCCEEEEEe
Confidence 999999999876553321 1246654 7777788999999999999999999876532 112 89999999999998
Q ss_pred CCcc
Q 011527 457 TTEW 460 (484)
Q Consensus 457 ~~e~ 460 (484)
+++-
T Consensus 391 ~~~~ 394 (400)
T 3od1_A 391 GTAG 394 (400)
T ss_dssp SCC-
T ss_pred cCCC
Confidence 7653
No 8
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=5.3e-73 Score=592.57 Aligned_cols=399 Identities=26% Similarity=0.424 Sum_probs=321.6
Q ss_pred ccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCCCCeEeeCC
Q 011527 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRP 147 (484)
Q Consensus 71 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~G~~l~LRp 147 (484)
|++++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.++.|++ +.++||+|+|++|+.++|||
T Consensus 2 m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrp 81 (423)
T 1htt_A 2 KNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRP 81 (423)
T ss_dssp -CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECS
T ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCC
Confidence 468999999999999999999999999999999999999999999999999876773 56899999999999999999
Q ss_pred CChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCC-CCCc
Q 011527 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI-TASD 226 (484)
Q Consensus 148 D~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl-~~~~ 226 (484)
|+|+++||+++++..+.++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++..+|+|++.++.++|++||+ + +
T Consensus 82 d~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~--~ 159 (423)
T 1htt_A 82 EGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISE--H 159 (423)
T ss_dssp CSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGG--G
T ss_pred CchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCC--C
Confidence 999999999998765567899999999999999999999999999999999999999999999999999999999 6 6
Q ss_pred eEEEeCCHHHHHHHHHhCCCCchhhhhHhHHH----HhhccCCHHHHHH-HHHhcCCCHHHHHHHHHHcc-CCCh-hhhh
Q 011527 227 VGFRISSRKVLQEVLRCHSIPEHLFGKVCIII----DKIEKLPLDVIKN-DLKSAGMSEAAIEELLRVLS-IKSL-TELE 299 (484)
Q Consensus 227 ~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l----~~~~~~~~~~l~~-~L~~~g~~~~~~~~l~~l~~-~~~~-~~l~ 299 (484)
+.+++||.+..+.... + +..+...+ +++.....+.+.. .+.-+..... ...+++. ...+ +.+.
T Consensus 160 ~~i~i~~~g~~~~~~~-~------~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~---~~~~~l~~~~~l~~~l~ 229 (423)
T 1htt_A 160 VTLELNSIGSLEARAN-Y------RDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNP---EVQALLNDAPALGDYLD 229 (423)
T ss_dssp CEEEEEECCCHHHHHH-C------------------------------------------------------------CC
T ss_pred cEEEEcCCCChhhHHH-H------HHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccH---HHHHHHhcchHHHhhhh
Confidence 9999999653322100 0 00000000 1111000011110 0000000000 0111110 0011 1123
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCceecccch
Q 011527 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPACGFGFG 378 (484)
Q Consensus 300 ~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pavGfsig 378 (484)
.+++++++++.++++.+|+ +|++|++++|+++||||++||++... |..++||+|||||+|++.||+++.||+|||||
T Consensus 230 ~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~ig 307 (423)
T 1htt_A 230 EESREHFAGLCKLLESAGI--AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMG 307 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTC--CCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCC--eEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEec
Confidence 5678899999999999997 49999999999999999999998642 55679999999999999999888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 379 DAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGK--GQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 379 ierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~--Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
+||++.++.+++..|++.+|++|+|++++++...+|.+++++||++ |++|++++.+.++++++++|++.|+|++|+||
T Consensus 308 veRl~~~l~e~~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~~iiiG 387 (423)
T 1htt_A 308 LERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLG 387 (423)
T ss_dssp HHHHHHHHHHHSTTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhcCcCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999886655568899999999888889999999999999 99999998888999999999999999999999
Q ss_pred CCccccCeEEEEECCCCceeeeccCcC
Q 011527 457 TTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 457 ~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|.++|+|+||++.+++|.+|+++|+
T Consensus 388 ~~e~~~~~v~vk~~~~~~~~~v~~~el 414 (423)
T 1htt_A 388 ESEVANGTAVVKDLRSGEQTAVAQDSV 414 (423)
T ss_dssp HHHHHHTEEEEEETTTCCEEEEEHHHH
T ss_pred chhhhcCeEEEEECCCCCceEEcHHHH
Confidence 999999999999999999999999876
No 9
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=2.3e-71 Score=579.86 Aligned_cols=400 Identities=25% Similarity=0.407 Sum_probs=325.8
Q ss_pred cccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCCCCeEeeCCC
Q 011527 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (484)
Q Consensus 72 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~G~~l~LRpD 148 (484)
.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.++.|++ +.++||+|+|++|+.++||||
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 46899999999999999999999999999999999999999999999998876773 678999999999999999999
Q ss_pred ChHHHHHHHHHcC-CCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCce
Q 011527 149 LTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (484)
Q Consensus 149 ~T~~iaR~~~~~~-~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~ 227 (484)
+|+++||+++++. .+.++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++..+|+|++.++.++|+++|++ ++
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~--~~ 159 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLR--RL 159 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCC--ce
Confidence 9999999999763 34578999999999999999999999999999999999999999999999999999999997 69
Q ss_pred EEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHh-hccCCHHHHHHHHHhc-----CCCHHHHHHHHHHccCCCh-hhhhH
Q 011527 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKSA-----GMSEAAIEELLRVLSIKSL-TELEG 300 (484)
Q Consensus 228 ~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~-~~~~~~~~l~~~L~~~-----g~~~~~~~~l~~l~~~~~~-~~l~~ 300 (484)
.+++||.+..+... ..+..+...++. .++.+. ...+.+... ....+....++..+....+ +.+..
T Consensus 160 ~i~i~~~g~~~~~~-------~~~~~l~~~l~~~~~~l~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 231 (421)
T 1h4v_B 160 KVKLSSVGDPEDRA-------RYNAYLREVLSPHREALSE-DSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGE 231 (421)
T ss_pred EEEEcCCCchhhHH-------HHHHHHHHHHHHHHhhcCH-HHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhH
Confidence 99999965322100 000000011110 000110 111111110 0000011111110011111 12235
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCcceeecCccccHhHhhcCCCCCceecccchH
Q 011527 301 EAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKLRAICGGGRYDQLLSTFGGDDIPACGFGFGD 379 (484)
Q Consensus 301 ~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigi 379 (484)
+++++++++.++++.+|+ +|++|++++|+++||||++||++... |..++||+|||||+|++.||++..||+|||||+
T Consensus 232 ~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igi 309 (421)
T 1h4v_B 232 EARAHLKEVERHLERLSV--PYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGV 309 (421)
T ss_pred HHHHHHHHHHHHHHHcCC--eEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecH
Confidence 677889999999999987 49999999999999999999999643 556799999999999999998889999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCc
Q 011527 380 AVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTE 459 (484)
Q Consensus 380 erl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e 459 (484)
||++.++.+++..|++.+|++|+|++++++...+|.+++++||++ ++|++++.+.++++++++|++.|+|++|+||++|
T Consensus 310 eRl~~~l~e~~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~~~~a~~~g~p~~iivG~~e 388 (421)
T 1h4v_B 310 ERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDE 388 (421)
T ss_pred HHHHHHHHhcCcCCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHHHHHHHhCCCCEEEEECchH
Confidence 999999999886555568899999999888888999999999999 9999998888999999999999999999999999
Q ss_pred cccCeEEEEECCCCceeeeccCcCC
Q 011527 460 WQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 460 ~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
+++|+|+||++.++++.+|++++++
T Consensus 389 ~~~~~v~vk~~~~~~~~~v~~~el~ 413 (421)
T 1h4v_B 389 LRAGEVTLKRLATGEQVRLSREEVP 413 (421)
T ss_pred hhcCcEEEEECCCCCceEECHHHHH
Confidence 9999999999999999999998863
No 10
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=6.4e-66 Score=538.53 Aligned_cols=392 Identities=27% Similarity=0.490 Sum_probs=307.2
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcc---ccccceEEEEeCCCCeEeeCCCC
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE---EIRDQLYCFEDRGNRRVALRPEL 149 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~---~~~~~~~~~~D~~G~~l~LRpD~ 149 (484)
+++|+|++||+|.+++++++|++.++++|.+|||++|.||+|++.++|..+.|. .+.++||+|.|++|+.++||||+
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCC
Confidence 579999999999999999999999999999999999999999999999876443 25789999999999999999999
Q ss_pred hHHHHHHHHHcCCC--CCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCce
Q 011527 150 TPSLARLVIQKGKS--VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (484)
Q Consensus 150 T~~iaR~~~~~~~~--~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~ 227 (484)
|++++|+++++... .++|+|+||+|+|||+|+++.||.|||+|+|+|+||.++..+|+|++.++.++|+.||++ ++
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~--~~ 159 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLK--HL 159 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCC--CE
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCC--ce
Confidence 99999999977553 578999999999999999999999999999999999999999999999999999999997 69
Q ss_pred EEEeCCHHHH------HHHHHhCCCCchhhhhHhHHHHh-hccCCHHHHHHHHHhcCC--CHHHHHHHHHHcc-CCC-hh
Q 011527 228 GFRISSRKVL------QEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKSAGM--SEAAIEELLRVLS-IKS-LT 296 (484)
Q Consensus 228 ~i~i~~~~il------~~~l~~~g~~~~~~~~v~~~l~~-~~~~~~~~l~~~L~~~g~--~~~~~~~l~~l~~-~~~-~~ 296 (484)
.+++||.+.. ...++. .+.. .+..+.+ ....+....+ -........+++. ... .+
T Consensus 160 ~i~l~~~g~~~~~~~~~~~l~~-------------~~~~~~~~l~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~ 225 (420)
T 1qe0_A 160 KLVINSVGDMASRKEYNEALVK-------------HFEPVIHEFCSD-CQSRLHTDPMRILDCKVDRDKEAIKTAPRITD 225 (420)
T ss_dssp EEEEEECCCHHHHHHHHHHHHH-------------HHGGGGGGSCHH-HHHTTTTCGGGGC------------CCCCGGG
T ss_pred EEEEcccCchhhHHHHHHHHHH-------------HHHHHHhhhCHH-HHHHHHhcchhhhcccchhHHHHHhhchHHHH
Confidence 9999994321 111111 1110 0011100 0000000000 0000000011111 000 11
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEec-C---CCcceeecCccccHhHhhcCCCCCce
Q 011527 297 ELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDR-D---GKLRAICGGGRYDQLLSTFGGDDIPA 372 (484)
Q Consensus 297 ~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~-~---g~~~~i~~GGRYD~L~~~f~~~~~pa 372 (484)
.+..+++++++.+.++++.+|+. +.+|++++|+++||||++|+++.. . |...+|++|||||+|++.||++..|+
T Consensus 226 ~l~~~~~~~l~~l~~~l~~~gi~--~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~ 303 (420)
T 1qe0_A 226 FLNEESKAYYEQVKAYLDDLGIP--YTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETG 303 (420)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCC--CEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEE
T ss_pred HhhHHHHHHHHHHHHHHHHcCCe--EEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCE
Confidence 22245677888888999999974 899999999999999999999864 2 44579999999999999999888999
Q ss_pred ecccchHHHHHHHHHHcC-CCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCE
Q 011527 373 CGFGFGDAVILELLKEKG-LLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQR 451 (484)
Q Consensus 373 vGfsigierl~~~l~e~~-~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~ 451 (484)
|||++|+||++.++.+.+ .+|. .+|++|+|++++++...+|.++++.||++|++|++++.+.++++++++|++.|+|+
T Consensus 304 vg~~igveRl~~~le~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~ 382 (420)
T 1qe0_A 304 IGFALSIERLLLALEEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKF 382 (420)
T ss_dssp EEEEEEHHHHHHHHHHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSE
T ss_pred EEEEecHHHHHHHHHhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCE
Confidence 999999999999997655 3554 67899999999877888999999999999999999988889999999999999999
Q ss_pred EEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 452 LILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 452 ~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+|+||++|.++|+|+||++.++++..|+++++
T Consensus 383 ~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l 414 (420)
T 1qe0_A 383 TIVIGDQELENNKIDVKNMTTGESETIELDAL 414 (420)
T ss_dssp EEEECHHHHHHTCEEEEETTTCCEEEECTTHH
T ss_pred EEEECcchhhcCeEEEEECCCCCeEEEcHHHH
Confidence 99999999999999999999999999999986
No 11
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=7.7e-64 Score=507.70 Aligned_cols=311 Identities=22% Similarity=0.341 Sum_probs=262.1
Q ss_pred cccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhh---hhccccccceEEEEeCCCCe
Q 011527 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR---KAGEEIRDQLYCFEDRGNRR 142 (484)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~---~~g~~~~~~~~~~~D~~G~~ 142 (484)
..+.|..+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.+ +.++.+.++||+|.|++|+.
T Consensus 15 ~~~~~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~ 94 (344)
T 1z7m_A 15 GRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQS 94 (344)
T ss_dssp -------CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCE
T ss_pred chhhhccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCE
Confidence 345566789999999999999999999999999999999999999999999999987 33445788999999999999
Q ss_pred EeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCC
Q 011527 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl 222 (484)
++||||+|+++||+++++ +.++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+++|+
T Consensus 95 l~LRpd~T~~~aR~~~~~--~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl 172 (344)
T 1z7m_A 95 ITLRYDFTLPLVRLYSQI--KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGL 172 (344)
T ss_dssp EEECCCSHHHHHHHHHTC--CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCCcHHHHHHHHhc--CCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999988 446899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhh-----
Q 011527 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE----- 297 (484)
Q Consensus 223 ~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~----- 297 (484)
+ +++|+|||++++++++ |++++.+..++.+++++++ ..+++.+...+++++..+.+..++..++.+.
T Consensus 173 ~--~~~i~l~~~gi~~~~l---g~~~~~~~~l~~~l~~~~~---~~~~~~l~~~~l~~~~~~~l~~l~~~g~~~~l~~~~ 244 (344)
T 1z7m_A 173 N--KTVFEIGSAKFFQRLC---QLADGSTELLTELLLKKDL---SGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLV 244 (344)
T ss_dssp S--SEEEEEEEHHHHHHHH---HHTTTCHHHHHHHHHTTCH---HHHHHHHTTSCCCHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred C--cEEEEECCHHHHHHHh---CCCHHHHHHHHHHHHhhCH---HHHHHHHHhcCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7 7999999999999988 6677777778777776544 4566667777888887777776655422111
Q ss_pred ------hhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCc
Q 011527 298 ------LEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIP 371 (484)
Q Consensus 298 ------l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~p 371 (484)
...+++++|+++.++|+.+| .+.||++++||++||||+|||++.. +...+||+|||||+|++.|| ++.|
T Consensus 245 ~l~~~~~~~~~l~~l~~l~~~L~~~g---~~~~D~~lvrgldYYtG~vFe~~~~-~~~~~i~~GGRYD~L~~~fg-~~~p 319 (344)
T 1z7m_A 245 TNTKDDVLISSFDQLKEFSEKLSMIK---PIIIDLGMVPKMDYYTDLMFKAYSS-AANQPILSGGRYDQLLSNFQ-EEAF 319 (344)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTTS---CCEECTTCCCSSTTCCSEEEEEEET-TEEEEEEEEEECHHHHHTSS-SCCC
T ss_pred HhhcchhhHHHHHHHHHHHHHHhhCC---CEEEeCCCCCCCccCCCeEEEEEEC-CCCCeEeeCccHHHHHHHhC-CCCC
Confidence 12678999999999999988 5999999999999999999999974 44569999999999999999 7899
Q ss_pred eecccchHHHHHHHHHHcCC
Q 011527 372 ACGFGFGDAVILELLKEKGL 391 (484)
Q Consensus 372 avGfsigierl~~~l~e~~~ 391 (484)
|||||+|+|||+.++.+.+.
T Consensus 320 avGfaiglerl~~~l~~~~~ 339 (344)
T 1z7m_A 320 AIGFCCHMDTILKALERQEL 339 (344)
T ss_dssp CEEEEEEHHHHHHHHHHHHC
T ss_pred eEEEEEEHHHHHHHHHhccc
Confidence 99999999999999887653
No 12
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=4.2e-64 Score=514.32 Aligned_cols=326 Identities=25% Similarity=0.343 Sum_probs=262.7
Q ss_pred CCcccccccCCCCCCcccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccc-
Q 011527 51 GGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR- 129 (484)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~- 129 (484)
|-||.=-+ .+.|.-..+ +++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.++ |+.+.
T Consensus 6 ~~~~~~~~---~~~~~~~~~--~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~-g~~~~~ 79 (373)
T 3rac_A 6 GTRSAWGA---RAWEAVRGF--ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRA-RSPESS 79 (373)
T ss_dssp ---------------CCCCC--CCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTT-SCTTSC
T ss_pred CCcCHHHH---HHHHHHHhc--CCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhc-CCccch
Confidence 44544333 444344544 489999999999999999999999999999999999999999999999884 66677
Q ss_pred cceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC------CCCCccceEEeEEEEEcCC-C
Q 011527 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM------TRGRRREHYQWNMDIIGVP-A 202 (484)
Q Consensus 130 ~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~------~~gr~rEf~Q~g~eiig~~-~ 202 (484)
++||+|.|++|+.++||||+|+++||+++++....++|+|+||+|+|||+|++ +.||+|||+|+|+|+||.+ +
T Consensus 80 ~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~ 159 (373)
T 3rac_A 80 RDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEAS 159 (373)
T ss_dssp CCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCC
T ss_pred hceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCC
Confidence 89999999999999999999999999999875545789999999999999999 8999999999999999998 8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHH---------
Q 011527 203 VTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL--------- 273 (484)
Q Consensus 203 ~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L--------- 273 (484)
+.+|+|+|.++.++|+.+|++ +++|+|||+++++++++.+|++++++..++.+++++++.+++++...|
T Consensus 160 ~~aDaEvi~l~~~~l~~lgl~--~~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l~~~~~~~l~ 237 (373)
T 3rac_A 160 VDVDMDVLRLLHEASAAAGVR--HHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLA 237 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--SCEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHCSCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC--ceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhcCHHHHHHHH
Confidence 999999999999999999996 799999999999999999999999999999888887654444443322
Q ss_pred ---HhcCC-----------CHHHHHHHHHHccCCChhhhh----HHHHHHHHHHHHHHHhcCC-cceEEEecCCccCCCc
Q 011527 274 ---KSAGM-----------SEAAIEELLRVLSIKSLTELE----GEAVADLKLLFSLAEKFGY-SDWIQFDASVVRGLAY 334 (484)
Q Consensus 274 ---~~~g~-----------~~~~~~~l~~l~~~~~~~~l~----~~~~~~L~~l~~~l~~~g~-~~~i~~Dl~l~r~~~Y 334 (484)
.-.|. ..+.++++..+.. +... .+++++|+++.++|+.+|+ ..++.||++++||++|
T Consensus 238 ~l~~l~g~~~~~~~~~~~~~~~~l~~~~~l~~----~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldY 313 (373)
T 3rac_A 238 NLLTWSPAERDAAKRSREASDRELEALLRDAV----DPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDY 313 (373)
T ss_dssp HHHHBCCCSSCTTSBCHHHHHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTT
T ss_pred HHHHHhCCccccccccccccHHHHHHHHhhhc----CcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCc
Confidence 11221 0111222111110 1112 5779999999999999999 6779999999999999
Q ss_pred eeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHHHHHHHHHcC
Q 011527 335 YTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKG 390 (484)
Q Consensus 335 YtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l~e~~ 390 (484)
|||+|||++.+ +...+||+|||||+|++.||+ +.||||||+++|||+.+|.+++
T Consensus 314 YTG~vFe~~~~-~~g~~i~~GGRYD~L~~~fG~-~~pAvGFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 314 YTGLVFEMFAP-GVGAPIAQGGRYDELLAQFGA-GAPAVGFAFEVERVMAVLEAQE 367 (373)
T ss_dssp CCSEEEEEECT-TCSSCSEEEEECTTTTGGGTC-CCCCEEEEEEHHHHHHHHHHHH
T ss_pred cCCeEEEEEEC-CCCCeEeecccccHHHHhhCC-CCCeEEEEEEHHHHHHHHHhcc
Confidence 99999999975 444699999999999999986 4999999999999999998764
No 13
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=1.9e-53 Score=460.63 Aligned_cols=397 Identities=18% Similarity=0.178 Sum_probs=302.0
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
.++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.. +|++ +.++||+|.|++|+.++|||+.|++
T Consensus 35 ~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~ 113 (572)
T 2j3l_A 35 VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKE-SGRYETYGPNLYRLKDRNDRDYILGPTHEET 113 (572)
T ss_dssp EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHH-HSHHHHSCTTSCEEECTTCCEEEECSCCHHH
T ss_pred cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCccccchheEEEecCCCCeEEEccccHHH
Confidence 589999999999999999999999999999999999999999999976 5764 6899999999999999999999999
Q ss_pred HHHHHHHcCC-CCCCCeeEEEecCeeeeCcC-CCC--CccceEEeEEEEEcCCChhhHHHH---HHHHHHHHHHcCCCCC
Q 011527 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHYQWNMDIIGVPAVTAEAEL---ISSIITFFKRIGITAS 225 (484)
Q Consensus 153 iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~-~~g--r~rEf~Q~g~eiig~~~~~adaEv---i~l~~~~l~~lgl~~~ 225 (484)
++|+++++.. +.++|+|+||+|+|||+|++ +.| |.|||+|+|+|+||.+...+|+|+ +.++.++|+.||++
T Consensus 114 ~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~-- 191 (572)
T 2j3l_A 114 FTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLE-- 191 (572)
T ss_dssp HHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 9999998754 45799999999999999987 577 999999999999999888888885 56899999999994
Q ss_pred ceEEEeCCHHHHHHHHHh------------------CCCCchhh-hh-HhH---------HHHhh---ccCCHHHHHHHH
Q 011527 226 DVGFRISSRKVLQEVLRC------------------HSIPEHLF-GK-VCI---------IIDKI---EKLPLDVIKNDL 273 (484)
Q Consensus 226 ~~~i~i~~~~il~~~l~~------------------~g~~~~~~-~~-v~~---------~l~~~---~~~~~~~l~~~L 273 (484)
+.+.+|+++.+.+.+++ |+...... .. +.. -+++. +..+.+++.
T Consensus 192 -~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~--- 267 (572)
T 2j3l_A 192 -FRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVA--- 267 (572)
T ss_dssp -EEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHH---
T ss_pred -EEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHH---
Confidence 99999998887765421 22111000 00 000 00000 001122222
Q ss_pred HhcCCCHHH-------------------------HHHHHHHccCCChhhhhHHHHHHHHHHHH----HHHhcCC--cceE
Q 011527 274 KSAGMSEAA-------------------------IEELLRVLSIKSLTELEGEAVADLKLLFS----LAEKFGY--SDWI 322 (484)
Q Consensus 274 ~~~g~~~~~-------------------------~~~l~~l~~~~~~~~l~~~~~~~L~~l~~----~l~~~g~--~~~i 322 (484)
..+|++.+. ..++.+.+..+.++. ...+++..+.. .+..+|+ ...+
T Consensus 268 ~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~---a~~~el~~~~g~~~g~~~p~gl~~~i~~ 344 (572)
T 2j3l_A 268 NFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDE---ATEEDARRVLGAGFGSIGPVNVSEDVKI 344 (572)
T ss_dssp HHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEE---CCHHHHHHHHSSCTTSCCSTTCCTTCEE
T ss_pred HHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCcccc---CCHHHHHHhhCCCccccCCccCCCCCcE
Confidence 222322211 111222221110100 11234444433 3333433 2368
Q ss_pred EEecCCcc--------------------CCCceeceeEEEEe-cCCCcceeecCcccc-----------Hh----Hhhc-
Q 011527 323 QFDASVVR--------------------GLAYYTGIVFECFD-RDGKLRAICGGGRYD-----------QL----LSTF- 365 (484)
Q Consensus 323 ~~Dl~l~r--------------------~~~YYtG~vFe~~~-~~g~~~~i~~GGRYD-----------~L----~~~f- 365 (484)
.+|+++++ |.+||++.+|++.. ..|..+++|+ |||| +| .+.|
T Consensus 345 ~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~g-g~~~~~~~ievg~~f~Lg~~ys~~~~ 423 (572)
T 2j3l_A 345 YADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGN-GVLAFTKGIEIGHIFKLGTRYSDAMG 423 (572)
T ss_dssp EEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSS-SBEEEEEEEEEEEEEEEETHHHHHHT
T ss_pred EEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccC-CcceeccceEEEEEeccCcccccccC
Confidence 99999999 67899999999873 3466677775 7776 22 1333
Q ss_pred ------CCC-CCcee-cccchHHHHHHHHHHc------CCCCCCCCCccEEEEEcC---cchHHHHHHHHHHHHHCCCeE
Q 011527 366 ------GGD-DIPAC-GFGFGDAVILELLKEK------GLLPPLNHQVENIVCALD---HNLQGAASMVATTLRGKGQSV 428 (484)
Q Consensus 366 ------~~~-~~pav-Gfsigierl~~~l~e~------~~~p~~~~~~~v~Vi~~~---~~~~~~a~~la~~Lr~~Gi~v 428 (484)
+++ ..|++ ||+||++|++.+|.+. +.+|.+.+|.+|+|++++ ++...+|.++++.||++|++|
T Consensus 424 ~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v 503 (572)
T 2j3l_A 424 ATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEV 503 (572)
T ss_dssp CEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeE
Confidence 444 47888 7999999999998775 367888889999999998 667899999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 429 DLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 429 ~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++++++.++++++++|++.|+||+|+||++| ++|+|+||++.+++|..|+++++
T Consensus 504 ~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l 557 (572)
T 2j3l_A 504 LVDDRNERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEEL 557 (572)
T ss_dssp EEECSSCCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHH
T ss_pred EEeCCCCCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHH
Confidence 9998888999999999999999999999999 99999999999999999998876
No 14
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=1.3e-52 Score=441.58 Aligned_cols=372 Identities=20% Similarity=0.221 Sum_probs=290.0
Q ss_pred ccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCC---
Q 011527 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRP--- 147 (484)
Q Consensus 73 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRp--- 147 (484)
.+.|+|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.. +|++ +.++||+|.|++|+.++|||
T Consensus 53 ~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~-sg~~d~~~~em~~~~d~~~~~~~LrPt~e 131 (458)
T 2i4l_A 53 RQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRE-SGRYDAYGPEMLRIADRHKRELLYGPTNE 131 (458)
T ss_dssp EEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSCTTSEEEECTTCCEEEECSCCH
T ss_pred eccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHh-cCCccccccceEEEEeCCCCeEEECCCCh
Confidence 45789999999999999999999999999999999999999999999987 4763 78999999999999999999
Q ss_pred CChHHHHHHHHHcCCCCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHHHHH---HHHHHHHHHcC
Q 011527 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELI---SSIITFFKRIG 221 (484)
Q Consensus 148 D~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~adaEvi---~l~~~~l~~lg 221 (484)
|+|++++|.++.++. ++|+|+||+|+|||+| +|+.| |.|||+|+|+|+||.++..+|+|++ .++.++|++||
T Consensus 132 e~t~~i~r~~~~s~~--~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lG 209 (458)
T 2i4l_A 132 EMITEIFRAYIKSYK--SLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMG 209 (458)
T ss_dssp HHHHHHHHHHCCBGG--GCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcc--ccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999999987653 6899999999999999 89999 9999999999999988888898875 55999999999
Q ss_pred CCCCceEEEeCCHHHHHHHHHhC-----CCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChh
Q 011527 222 ITASDVGFRISSRKVLQEVLRCH-----SIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLT 296 (484)
Q Consensus 222 l~~~~~~i~i~~~~il~~~l~~~-----g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~ 296 (484)
++ +.+.+||++.+.+.+++. ...++.. ..| ...+.+ +++.+...+.. .+ .+.++..-.+.. +.
T Consensus 210 l~---~~~~~~~~g~~gg~~s~e~~~l~~~ged~i-~~~--~~~~~~-n~~~~~~~~~~-~l-~~~l~~~~~~~~---~~ 277 (458)
T 2i4l_A 210 LK---AIPMRAETGPIGGDLSHEFIVLAETGESGV-YID--RDVLNL-PVPDENVDYDG-DL-TPIIKQWTSVYA---AT 277 (458)
T ss_dssp CC---EEEEECCCCSSCSSCEEEEEEECTTCSEEE-EEE--GGGGGC-CCCCTTCCTTS-CC-HHHHHHHHHSCE---EE
T ss_pred Cc---eEEEEccccccCCccchhhhhhhhcCcceE-Eec--cccccc-CHHHHhccccH-hH-HHHHhcCchhhh---cC
Confidence 94 899999988776554321 1222110 000 000000 00000000000 00 000000000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCc---ceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCc--
Q 011527 297 ELEGEAVADLKLLFSLAEKFGYS---DWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIP-- 371 (484)
Q Consensus 297 ~l~~~~~~~L~~l~~~l~~~g~~---~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~p-- 371 (484)
. +. ..|-. ..+.+|++++||++ ||.+|++ |...+++.||||++. +++..|
T Consensus 278 ~---~~------------~~g~~~~~~~~~~~l~~~rgl~--~G~iFel----g~~~s~~~g~ry~~~----~G~~~p~~ 332 (458)
T 2i4l_A 278 E---DV------------HEPARYESEVPEANRLNTRGIE--VGQIFYF----GTKYSDSMKANVTGP----DGTDAPIH 332 (458)
T ss_dssp T---TT------------CCTTHHHHHSCTTTEEEEEEEE--EEEEEEE----ETHHHHHTTCEEECT----TSCEEECE
T ss_pred h---hh------------cccccccCCCCCcCceeeeeec--cCcEEEe----cccccccCCcEEECC----CCCEeceE
Confidence 0 00 00100 12447888899999 9999998 344688999999764 345667
Q ss_pred eecccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcC---cchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHH
Q 011527 372 ACGFGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALD---HNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFK 442 (484)
Q Consensus 372 avGfsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~---~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~ 442 (484)
++||+||++|++.++.++ | .+|.+.+|.+|+|++++ ++..++|.++++.||++|++|++++++.+++++++
T Consensus 333 ~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~ 412 (458)
T 2i4l_A 333 GGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFA 412 (458)
T ss_dssp EEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHH
T ss_pred EeeecccHHHHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHH
Confidence 789999999999998775 3 67888889999999996 55788999999999999999999988889999999
Q ss_pred HHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcCC
Q 011527 443 RAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 443 ~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
+|++.|+|++|+||++|+++|+|+||++.+++|..|++++++
T Consensus 413 ~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~ 454 (458)
T 2i4l_A 413 TADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVV 454 (458)
T ss_dssp HHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTT
T ss_pred HHHhcCCCEEEEECCchhhCCEEEEEECCCCcEEEEeHHHHH
Confidence 999999999999999999999999999999999999999874
No 15
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=3.5e-51 Score=424.52 Aligned_cols=350 Identities=16% Similarity=0.228 Sum_probs=282.4
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
+.++|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.+ +|++ +.++||+ .|++|+.++|||+.|+
T Consensus 17 ~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~~~~~LrP~~~~ 94 (401)
T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNCP 94 (401)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETTEEEEECSCSHH
T ss_pred CCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCCceEEEcCCCCH
Confidence 4589999999999999999999999999999999999999999999998 6875 6789999 8999999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCc--CCCC--CccceEEeEEEEEcCCChhhHH---HHHHHHHHHHHHcCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYER--MTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGIT 223 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~--~~~g--r~rEf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~lgl~ 223 (484)
+++|+++++.. +.++|+|+||+|+|||+|+ |+.| |.|||+|+|+|+||. ...+|+ |++.++.+++++||++
T Consensus 95 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~-~~~~~~e~~e~i~~~~~~~~~lgl~ 173 (401)
T 1evl_A 95 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT-EEQIRDEVNGCIRLVYDMYSTFGFE 173 (401)
T ss_dssp HHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCC-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999987654 3578999999999999997 4888 999999999999996 556776 5899999999999996
Q ss_pred CCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHH
Q 011527 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~ 303 (484)
++.+.+|+.. -..+|..+. .+. ....+++.|...|++.+ ...+
T Consensus 174 --~~~~~~~~~~-----~~~~~~~~~--------~~~----a~~~~~~~l~~~g~~~~--------~~~~---------- 216 (401)
T 1evl_A 174 --KIVVKLSTRP-----EKRIGSDEM--------WDR----AEADLAVALEENNIPFE--------YQLG---------- 216 (401)
T ss_dssp --CCEEEEECCC-----SSCCSCHHH--------HHH----HHHHHHHHHHHTTCCCE--------EETT----------
T ss_pred --ceEEEEecCC-----cccCCCHHH--------HHH----HHHHHHHHHHhcCCCce--------ecCC----------
Confidence 5889999853 011111100 000 00112222222222100 0000
Q ss_pred HHHHHHHHHHHhcCCcceEEEecCCcc--CCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecc-cc--h
Q 011527 304 ADLKLLFSLAEKFGYSDWIQFDASVVR--GLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGF-GF--G 378 (484)
Q Consensus 304 ~~L~~l~~~l~~~g~~~~i~~Dl~l~r--~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGf-si--g 378 (484)
....+|. .+|+.+++ |++||+|++|.-|. -+.+.|+||++. .|++..|++|+ ++ |
T Consensus 217 --------~~~~y~~----~~d~~~~~~~G~~~~~gt~~~d~~-----l~~~~~~~y~~~---~g~~~~p~~~~~~~~Gg 276 (401)
T 1evl_A 217 --------EGAFYGP----KIEFTLYDCLDRAWQCGTVQLDFS-----LPSRLSASYVGE---DNERKVPVMIHRAILGS 276 (401)
T ss_dssp --------CSBTTBC----EEEEEEECTTCCEEEEEEEEEESS-----HHHHTTCCEECT---TSCEECCEEEEEEEEEE
T ss_pred --------CccccCC----CcCeEEEecCCCeEEeeeeeeccc-----cccccCCEEECC---CCCCcCcEEEEecCCCc
Confidence 0001121 37888888 99999999984231 134678999743 35456899988 77 8
Q ss_pred HHHHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 379 DAVILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 379 ierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
++|++.+|.+. +.+|.+.+|.+|+|++++++...+|.++++.||++|++|++++++.++++++++|++.|+|++|+||
T Consensus 277 ieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG 356 (401)
T 1evl_A 277 MERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCG 356 (401)
T ss_dssp HHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEC
Confidence 99999999887 7788888899999999998889999999999999999999998888999999999999999999999
Q ss_pred CCccccCeEEEEECCCCceeeeccCcC
Q 011527 457 TTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 457 ~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|+++|+|+||++.+++|.+|+++++
T Consensus 357 ~~e~~~~~v~vk~~~~~~q~~v~~~el 383 (401)
T 1evl_A 357 DKEVESGKVAVRTRRGKDLGSMDVNEV 383 (401)
T ss_dssp HHHHHHTEEEEEETTSCEEEEEEHHHH
T ss_pred cchhhCCeEEEEECCCCceEEeeHHHH
Confidence 999999999999999999999998876
No 16
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=1.3e-51 Score=406.04 Aligned_cols=259 Identities=19% Similarity=0.240 Sum_probs=220.1
Q ss_pred HHHHHHH--HHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC-CCe
Q 011527 92 WLFHNFQ--EVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS-LPL 168 (484)
Q Consensus 92 ~i~~~i~--~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~-lPl 168 (484)
.|++.++ ++|++|||++|.||+||+.++|.+ + +|.|++|+.++||||+|+|+| +++..+.+ +|+
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-------d---~f~d~~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-------N---FFLDRKGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-------S---CEEETTSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc-------c---ccCCCCCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 4667777 999999999999999999999854 2 567999999999999999999 44444456 899
Q ss_pred eEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCc
Q 011527 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248 (484)
Q Consensus 169 k~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~ 248 (484)
|+||+|+|||+|+++. |||+|+|+|+||.+++.+|+|+|.++.++++.+|++ ++.|+|||+++++.++.. +++
T Consensus 72 R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~--~~~i~l~~~~~~~~~~~~--~~~ 144 (275)
T 1usy_A 72 KVWYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG--PVIVEIGHTGVYEDLLKE--IPK 144 (275)
T ss_dssp EEECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS--CEEEEEEETTHHHHHHTT--SCG
T ss_pred EEEEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC--CeEEEeCCHHHHHHHHHh--CCH
Confidence 9999999999999876 999999999999999999999999999999999997 699999999999999876 566
Q ss_pred hhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC----Chhhhh--HHHHHHHHHHHHHHH-hcCCcce
Q 011527 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK----SLTELE--GEAVADLKLLFSLAE-KFGYSDW 321 (484)
Q Consensus 249 ~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~----~~~~l~--~~~~~~L~~l~~~l~-~~g~~~~ 321 (484)
++...++.++++.+ ...+++.+...+++++..+.+.+++... -++.+. .+++++|+++.++|+ .+| ...
T Consensus 145 ~~~~~l~~~l~~~~---~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~l~~~~~~l~~l~~l~~~l~~~~g-~~~ 220 (275)
T 1usy_A 145 DLHEKVLNLIDTKN---LAEIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFP-TVS 220 (275)
T ss_dssp GGHHHHHHHHHTTC---HHHHHHHHHHTCCCCTHHHHHHHHHHHCCSGGGGGTSCCCHHHHHHHHHHHHHHHHHCS-SSE
T ss_pred HHHHHHHHHHHccC---HHHHHHHHHhcCCCHHHHHHHHHHHHhhCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CCe
Confidence 66777777776654 4466777888888876677666665432 123333 578999999999999 999 557
Q ss_pred EEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHHH
Q 011527 322 IQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVI 382 (484)
Q Consensus 322 i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl 382 (484)
+.||++++||++||||+|||++.. |...+||+|||||++ ..||||||||+||+
T Consensus 221 ~~~D~~lvRgldYYtG~vFe~~~~-~~~~~i~~GGRYD~l-------~~pavGfsig~er~ 273 (275)
T 1usy_A 221 VEIDLTLARTIEEYCGLIFTIYDT-SSSRLVAAGGEYTVN-------GEKGVGGSIFLEGK 273 (275)
T ss_dssp EEECCCCGGGGGTCSSEEEEEEET-TTTEEEEEEEEEEET-------TEEEEEEEEEEEEE
T ss_pred EEEeccccCCCCccCCeEEEEEEC-CCCCeEeeecCCCCC-------CCCEEEEEEEeecc
Confidence 999999999999999999999985 666899999999996 48999999999875
No 17
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=7.5e-47 Score=398.35 Aligned_cols=326 Identities=17% Similarity=0.156 Sum_probs=266.2
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC----CCe
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~----G~~ 142 (484)
.+++.+.++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.+++|+. +.++||+|.|++ |+.
T Consensus 26 ~li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~ 105 (477)
T 1hc7_A 26 ELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEP 105 (477)
T ss_dssp TSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEE
T ss_pred CCeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCe
Confidence 34556679999999999999999999999999999999999999999999998767764 689999999987 889
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCCC--CccceEEeEEEEEcCCChhhHHHHHH---HHHHH
Q 011527 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAVTAEAELIS---SIITF 216 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~g--r~rEf~Q~g~eiig~~~~~adaEvi~---l~~~~ 216 (484)
++|||+.|++++|+++++.. +.++|+|+||+|+|||+|.+.+| |.|||+|+|+|++|.+...+|+|++. ++.++
T Consensus 106 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i 185 (477)
T 1hc7_A 106 LAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 185 (477)
T ss_dssp EEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998755 45799999999999999965668 99999999999999988889988655 59999
Q ss_pred H-HHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCCh
Q 011527 217 F-KRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295 (484)
Q Consensus 217 l-~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~ 295 (484)
+ +.||++ +.+.++++. +.+ .|..
T Consensus 186 ~~~~Lgl~---~~~~~~~~~------e~~-------------------------------~g~~---------------- 209 (477)
T 1hc7_A 186 AREYAAIP---VIEGLKTEK------EKF-------------------------------AGAV---------------- 209 (477)
T ss_dssp HHHHHCCC---CEEEECCTT------TSC-------------------------------TTSS----------------
T ss_pred HHHhcCCe---EEEEeCChH------Hhc-------------------------------CCcc----------------
Confidence 9 899995 888887620 000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCC-CCceec
Q 011527 296 TELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGD-DIPACG 374 (484)
Q Consensus 296 ~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~-~~pavG 374 (484)
....+|.-+.-+..+|+|++|++ |...+.+.|+||++. -|.. .++++|
T Consensus 210 ------------------------~~~~ie~~~~dgr~~~~gt~~~l----g~~~s~~~g~~y~~~---~G~~~~~~~~~ 258 (477)
T 1hc7_A 210 ------------------------YTTTIEALMKDGKALQAGTSHYL----GENFARAFDIKFQDR---DLQVKYVHTTS 258 (477)
T ss_dssp ------------------------EEEEEEEECTTSCEEEEEEEEEE----ETHHHHHTTCEEECT---TSCEEECEEEE
T ss_pred ------------------------cceEEEEEcCCCcEEEEeeeEEc----ccccccccCeEEECC---CCCEEeeeEee
Confidence 00111111112345789999985 334578899999753 2322 355789
Q ss_pred ccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcCc-----chHHHHHHHHHHHHHCCCeEEEEeC-CCCHHHHHH
Q 011527 375 FGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALDH-----NLQGAASMVATTLRGKGQSVDLVLE-SKPLKWVFK 442 (484)
Q Consensus 375 fsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~~-----~~~~~a~~la~~Lr~~Gi~v~~~~~-~~~~~~~~~ 442 (484)
|++| +|++.+|.+. | .+|.+.+|++|+|+++++ +...+|.++++.||++|++|+++++ +.+++++++
T Consensus 259 ~Gig-eRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~ 337 (477)
T 1hc7_A 259 WGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFH 337 (477)
T ss_dssp EEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred ccHH-HHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 9999 9999999764 3 578888999999999985 5788999999999999999999987 789999999
Q ss_pred HHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 443 RAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 443 ~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+|++.|+|++|+||++|+++|+|+||++. ++|..|++++|
T Consensus 338 ~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el 377 (477)
T 1hc7_A 338 EWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAAL 377 (477)
T ss_dssp HHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGH
T ss_pred HHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHH
Confidence 99999999999999999999999999999 99999999886
No 18
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=2.9e-49 Score=417.53 Aligned_cols=354 Identities=21% Similarity=0.259 Sum_probs=269.0
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
.|+|++||+|.+++++++|++.++++|.++||++|.||+|++.++|.+ +|++ +.++||+| |++|+.++||||+|++
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sg~~~~~~~emy~~-d~~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV-SGHIEFYRNNMYLF-DIEGHEFAVKPMNCPY 114 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-TCCCTTGGGGSEEE-EETTEEEEECSCSHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh-ccCccccccceEEE-ecCCcEEEEccccHHH
Confidence 799999999999999999999999999999999999999999999987 4553 67899999 9999999999999999
Q ss_pred HHHHHHHcCC-CC---CCCeeEEEecCeeeeCcCC--CC--CccceEEeEEEEEcCCChhhH--HHHHHHHHHHHHH-cC
Q 011527 153 LARLVIQKGK-SV---SLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKR-IG 221 (484)
Q Consensus 153 iaR~~~~~~~-~~---~lPlk~yyig~vfR~e~~~--~g--r~rEf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~-lg 221 (484)
++|+++++.. +. ++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+. ||
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lG 194 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFK 194 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999988733 33 7899999999999999888 88 999999999999999888888 8999999999999 99
Q ss_pred C----CCCceEEEeCCHH--HH-HHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC
Q 011527 222 I----TASDVGFRISSRK--VL-QEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (484)
Q Consensus 222 l----~~~~~~i~i~~~~--il-~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~ 294 (484)
+ + ++.+.+||+. ++ +. ..|..+ ..++..+...+.++..+...|++....+.+..++.++
T Consensus 195 l~~~~~--~~~l~i~~~~~~~~~e~---~~g~~~--------~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~- 260 (471)
T 3a32_A 195 LGVSSE--TFKVRLSMSDKSLIGKE---FMGSKE--------EWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPK- 260 (471)
T ss_dssp CCCSTT--TEEEEEECCCGGGBTTT---BCSCHH--------HHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCE-
T ss_pred CCcCCC--CeEEEEecCCCCccccc---ccCCHH--------HHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCc-
Confidence 9 5 6999999972 11 11 011111 1122111111222222222232211000000011110
Q ss_pred hhh-hhH-H-HHHHHHHHHHHHHhcCCcceEEEecCCccCCC--cee----ceeEEEEecCCCcceeecCccccHhHhhc
Q 011527 295 LTE-LEG-E-AVADLKLLFSLAEKFGYSDWIQFDASVVRGLA--YYT----GIVFECFDRDGKLRAICGGGRYDQLLSTF 365 (484)
Q Consensus 295 ~~~-l~~-~-~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~--YYt----G~vFe~~~~~g~~~~i~~GGRYD~L~~~f 365 (484)
++. +.. + ++.++ ..+| ++++|++++|+++ ||| |++ +.+.- + .+++
T Consensus 261 i~~~l~d~~~~l~~~-------~~~g---~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i-~--~~i~------------ 314 (471)
T 3a32_A 261 LDFIMMVEESGVSKE-------WQMG---TIQFDFNLPRRFRLYDVVREEFGIE-EVYII-H--RALL------------ 314 (471)
T ss_dssp EEEEEEEESSSCEEE-------EEEE---EEEEESSHHHHTTHHHHHHHHHCCS-CEEEE-E--EEEE------------
T ss_pred cceEEeccHHhhhhh-------heee---eEEecccccccCCceEeccccCCce-eeEEE-e--cccc------------
Confidence 110 100 0 10010 0122 5899999999999 999 987 66431 1 1222
Q ss_pred CCCCCceecccchHHHHHHHHHHc--CCCCCCCCCccEEEEEcC------cchHHHHHHHHHHHHHCCCeEEEEe-CCCC
Q 011527 366 GGDDIPACGFGFGDAVILELLKEK--GLLPPLNHQVENIVCALD------HNLQGAASMVATTLRGKGQSVDLVL-ESKP 436 (484)
Q Consensus 366 ~~~~~pavGfsigierl~~~l~e~--~~~p~~~~~~~v~Vi~~~------~~~~~~a~~la~~Lr~~Gi~v~~~~-~~~~ 436 (484)
| |++|++.++.+. |.+|.+.+|.+|+|++++ ++...+|.++++.||++|++|++++ ++.+
T Consensus 315 --------G---gieRli~~lie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~ 383 (471)
T 3a32_A 315 --------G---SIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTG 383 (471)
T ss_dssp --------E---EHHHHHHHHHHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTT
T ss_pred --------C---cHHHHHHHHHHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 1 789999765543 467877789999999997 5578899999999999999999998 7889
Q ss_pred HHHHHHHHH-HcCCCEEEEEcCCccccCeEEEEECCCCc--eeeeccC
Q 011527 437 LKWVFKRAA-RINAQRLILVGTTEWQKGMVGVKILSSGE--QYEIKLD 481 (484)
Q Consensus 437 ~~~~~~~a~-~~gi~~~iiig~~e~~~~~v~vk~~~~~~--~~~v~~~ 481 (484)
+++++++|+ +.|+|++|+||++|+++|+|+||++.+++ +..|+++
T Consensus 384 ~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~~~~v~~~ 431 (471)
T 3a32_A 384 LSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIA 431 (471)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccceEEEeec
Confidence 999999999 99999999999999999999999999998 6788876
No 19
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.5e-47 Score=419.01 Aligned_cols=356 Identities=20% Similarity=0.254 Sum_probs=274.1
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCC-CeEeeCCCChH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGN-RRVALRPELTP 151 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G-~~l~LRpD~T~ 151 (484)
+++|++||+|.+++++++|++.+++++.++||++|.||+|++.++|.+ +|++ +.++||+++|.+| +.++||||+|+
T Consensus 259 ~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~-sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~ 337 (645)
T 1nyr_A 259 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKT-SGHWDHYQEDMFPPMQLDETESMVLRPMNCP 337 (645)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHH-HTHHHHCTTSSCCCEEETTTEEEEECSSSHH
T ss_pred CCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhh-CCCccccccCcceeEecCCCeEEEeCCCCCH
Confidence 489999999999999999999999999999999999999999999987 5775 7899999999999 99999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC--CC--CccceEEeEEEEEcCCChhhH--HHHHHHHHHHHHHcCCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITA 224 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~--~g--r~rEf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~ 224 (484)
+++|+++++.. +.++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+.||++
T Consensus 338 ~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~- 416 (645)
T 1nyr_A 338 HHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE- 416 (645)
T ss_dssp HHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 99999998765 458999999999999999886 66 999999999999999888888 89999999999999996
Q ss_pred CceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHHH
Q 011527 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVA 304 (484)
Q Consensus 225 ~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~~ 304 (484)
++.+++|++... ..-...|..+. .++. ...+++.|...|++....+....++.++ ++....+++.
T Consensus 417 -~~~~~l~~~~~~-~~e~~~g~~e~--------~~~~----~~~l~~~l~~~g~~~~~~~~~~~~ygpk-i~~~~~d~lg 481 (645)
T 1nyr_A 417 -DYSFRLSYRDPE-DKEKYFDDDDM--------WNKA----ENMLKEAADELGLSYEEAIGEAAFYGPK-LDVQVKTAMG 481 (645)
T ss_dssp -CEEEEEEECCCC-CSSSSSCCHHH--------HHHH----HHHHHHHHHHHCCCCCCEESCSBTTBCE-EEEEECCTTS
T ss_pred -eEEEEEeCCCcc-cchhhcCChHH--------HHHH----HHHHHHHHHHcCCCeEecCCCCceeCCc-cceehhhhhC
Confidence 699999985210 00001111100 1110 1223333333332211000000000000 0000000000
Q ss_pred HHHHHHHHHHhcCCcceEEEecCCccCCC-ceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCcee---cccchHH
Q 011527 305 DLKLLFSLAEKFGYSDWIQFDASVVRGLA-YYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPAC---GFGFGDA 380 (484)
Q Consensus 305 ~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~-YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pav---Gfsigie 380 (484)
+ .+.. .++++|+++.++++ ||+|. + |++..|++ |++.|+|
T Consensus 482 ~---------~~~~-gtiq~D~~l~~~~d~~Y~~~-------~-------------------g~~~~P~~ih~~~~Ggie 525 (645)
T 1nyr_A 482 K---------EETL-STAQLDFLLPERFDLTYIGQ-------D-------------------GEHHRPVVIHRGVVSTME 525 (645)
T ss_dssp C---------CEEE-EEEEEESSHHHHTTCCEECT-------T-------------------SCEECCEEEEEEEEEEHH
T ss_pred c---------hhhc-ceEEeecccccccceEEECC-------C-------------------CCccCcEEEEeccCCcHH
Confidence 0 0000 14667777777776 66653 1 22346777 7777899
Q ss_pred HHHHHHHHc--CCCCCCCCCccEEEEEcC-cchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcC
Q 011527 381 VILELLKEK--GLLPPLNHQVENIVCALD-HNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 381 rl~~~l~e~--~~~p~~~~~~~v~Vi~~~-~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
|++.+|.|+ +.+|.|.+|.+|+|++++ ++..++|.++++.||++|++|+++++++++++++++|++.|+||+|+||+
T Consensus 526 R~i~~liE~~~~~~P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~ 605 (645)
T 1nyr_A 526 RFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGD 605 (645)
T ss_dssp HHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECH
T ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEcc
Confidence 999888664 678988899999999999 78889999999999999999999998889999999999999999999999
Q ss_pred CccccCeEEEEECCCCceeeeccCcC
Q 011527 458 TEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 458 ~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+|+++|+|+||++.++++..|+++++
T Consensus 606 ~e~~~~~V~vr~r~~~~~~~v~~~e~ 631 (645)
T 1nyr_A 606 KEVENNQVNVRQYGSQDQETVEKDEF 631 (645)
T ss_dssp HHHHTTEEEEEETTSSCCCEEEHHHH
T ss_pred chhhCCEEEEEECCCCcEEEEEHHHH
Confidence 99999999999999999999998876
No 20
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=1.5e-45 Score=387.18 Aligned_cols=326 Identities=21% Similarity=0.276 Sum_probs=272.8
Q ss_pred ccccc-cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC----CC
Q 011527 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NR 141 (484)
Q Consensus 69 ~~~~~-~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~----G~ 141 (484)
.+++. ..++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.+++|+. +.++||+|.|++ |+
T Consensus 19 ~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~ 98 (459)
T 1nj8_A 19 EIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDV 98 (459)
T ss_dssp SSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEE
T ss_pred CCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCC
Confidence 34555 578999999999999999999999999999999999999999999998778863 688999999986 89
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcC-CCC--CccceE-EeEEEEEcCCChhhHHH---HHHHH
Q 011527 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVTAEAE---LISSI 213 (484)
Q Consensus 142 ~l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~-~~g--r~rEf~-Q~g~eiig~~~~~adaE---vi~l~ 213 (484)
.++|||+.|++++|+++++.. +.++|+|+||+|+|||+|++ ++| |.|||+ |+|+|++|.+...+|+| ++.++
T Consensus 99 ~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~ 178 (459)
T 1nj8_A 99 KLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIY 178 (459)
T ss_dssp EEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHH
Confidence 999999999999999998754 45899999999999999998 888 999999 99999999988888887 89999
Q ss_pred HHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC
Q 011527 214 ITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (484)
Q Consensus 214 ~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~ 293 (484)
.++++.||++ +.+.+++. .+ +. .
T Consensus 179 ~~~~~~LGl~---~~~~~~~~-------------~e-------------k~-------------------------~--- 201 (459)
T 1nj8_A 179 KKFFDTLGIP---YLISKRPE-------------WD-------------KF-------------------------P--- 201 (459)
T ss_dssp HHHHHHHTCC---CEEEEECT-------------TS-------------CC-------------------------T---
T ss_pred HHHHHHCCCc---eEEeecCc-------------hh-------------hc-------------------------C---
Confidence 9999999995 77776541 00 00 0
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCC-CCCce
Q 011527 294 SLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGG-DDIPA 372 (484)
Q Consensus 294 ~~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~-~~~pa 372 (484)
|......+|..+.-|..++.|++|++ |...+.+.|+||++.- |. +.+++
T Consensus 202 -----------------------ga~~~~~ie~~~~dg~~~e~gt~~~l----g~~~s~~~~~~Y~~~~---G~~~~v~~ 251 (459)
T 1nj8_A 202 -----------------------GAEYTMAFDTIFPDGRTMQIATVHNL----GQNFSKTFEIIFETPT---GDKDYAYQ 251 (459)
T ss_dssp -----------------------TCSEEEEEEEECTTSCEEEEEEEEEE----ETHHHHHTTCEEECTT---SSEEECEE
T ss_pred -----------------------CcccceeEEEEcCCCcEEEEEEEeec----ccccccccCeEEECCC---CCEeeeeE
Confidence 00001112222223667788888864 3345678999998621 32 13467
Q ss_pred ecccchHHHHHHHHHHc-C-----CCCCCCCCccEEEEEc-C-c---chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHH
Q 011527 373 CGFGFGDAVILELLKEK-G-----LLPPLNHQVENIVCAL-D-H---NLQGAASMVATTLRGKGQSVDLVLESKPLKWVF 441 (484)
Q Consensus 373 vGfsigierl~~~l~e~-~-----~~p~~~~~~~v~Vi~~-~-~---~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~ 441 (484)
+||++| +|++.+|.+. + .+|.+.+|++|+|+++ + + +...+|.++++.||++ ++|++++++.++++++
T Consensus 252 ~~~Gig-eRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~~~g~k~ 329 (459)
T 1nj8_A 252 TCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKF 329 (459)
T ss_dssp EEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSCSCHHHHH
T ss_pred eeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCCCCHHHHH
Confidence 899999 9999998653 2 5788889999999999 5 4 5788999999999999 9999998888999999
Q ss_pred HHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 442 KRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 442 ~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|++.|+|++|+||++|+++|+|+||++.+++|..|+++++
T Consensus 330 ~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el 371 (459)
T 1nj8_A 330 NDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQL 371 (459)
T ss_dssp HHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSH
T ss_pred HHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHH
Confidence 999999999999999999999999999999999999999986
No 21
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=4.9e-46 Score=405.48 Aligned_cols=350 Identities=16% Similarity=0.244 Sum_probs=272.3
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChH
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~ 151 (484)
+.++|++||+|.+++++++|++.+++.+.++||++|.||+|++.++|.+ +|++ +.++||+ +|++|+.++|||+.|+
T Consensus 258 ~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~~~~~LrP~~~~ 335 (642)
T 1qf6_A 258 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNCP 335 (642)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETTEEEEECSSSHH
T ss_pred cCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCCceEEecCCCCH
Confidence 4589999999999999999999999999999999999999999999988 6885 6889999 8999999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcC--CCC--CccceEEeEEEEEcCCChhhHHH---HHHHHHHHHHHcCCC
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGIT 223 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~--~~g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~~l~~lgl~ 223 (484)
+++|++.++.. +.++|+|+||+|+|||+|++ +.| |.|||+|+|+|+||.+ ..+++| ++.++.++|+.||++
T Consensus 336 ~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~~~i~~~~~i~~~lGl~ 414 (642)
T 1qf6_A 336 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE-EQIRDEVNGCIRLVYDMYSTFGFE 414 (642)
T ss_dssp HHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999987654 45799999999999999986 778 9999999999999964 456666 699999999999996
Q ss_pred CCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHH
Q 011527 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~ 303 (484)
++.+.++++. . ..+|..+.| +. ....+++.|...|++.. ...+ +
T Consensus 415 --~~~v~l~~~~--e---~~~g~~e~w--------~~----a~~~l~~~l~~~g~~~~--------~~~g-------~-- 458 (642)
T 1qf6_A 415 --KIVVKLSTRP--E---KRIGSDEMW--------DR----AEADLAVALEENNIPFE--------YQLG-------E-- 458 (642)
T ss_dssp --CCEEEEECCC--S---SCCSCHHHH--------HH----HHHHHHHHHHTTTCCCE--------EETT-------C--
T ss_pred --ceEEEEecCc--c---cccCCHHHH--------HH----HHHHHHHHHHHcCCCcE--------EcCC-------C--
Confidence 6899999853 0 011111100 00 00112222222222100 0000 0
Q ss_pred HHHHHHHHHHHhcCCcceEEEecCC--ccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecc-cc--h
Q 011527 304 ADLKLLFSLAEKFGYSDWIQFDASV--VRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGF-GF--G 378 (484)
Q Consensus 304 ~~L~~l~~~l~~~g~~~~i~~Dl~l--~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGf-si--g 378 (484)
...+|.. +|+.+ ..|.+||+|++|--|. -+...|+||- ...|++..|++|+ ++ +
T Consensus 459 ---------~afygpk----~d~~~~d~~G~~~~~gti~~df~-----l~~r~~~~y~---~~~g~~~~P~~~hrai~G~ 517 (642)
T 1qf6_A 459 ---------GAFYGPK----IEFTLYDCLDRAWQCGTVQLDFS-----LPSRLSASYV---GEDNERKVPVMIHRAILGS 517 (642)
T ss_dssp ---------SCTTCCE----EEEEEECTTCCEEEEEEEEEESS-----HHHHTTCCEE---CTTSCEECCEEEEEEEEEE
T ss_pred ---------cccccCc----ccEEEEccCCceEEeeeEEEecc-----CCccCCCEEE---ecCCCCcCcEEEEeccCCC
Confidence 0012221 23333 2366677776653221 0223455552 2345456788877 66 8
Q ss_pred HHHHHHHHHHc--CCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 379 DAVILELLKEK--GLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 379 ierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
++|++.+|.|+ +.+|.+.+|.+|+|++++++..++|.++++.||++|++|+++++++++++++++|++.|+||+|+||
T Consensus 518 ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG 597 (642)
T 1qf6_A 518 MERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCG 597 (642)
T ss_dssp HHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999998875 6789999999999999998889999999999999999999999888999999999999999999999
Q ss_pred CCccccCeEEEEECCCCceeeeccCcC
Q 011527 457 TTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 457 ~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++|+++|+|+||++.++++..|+++++
T Consensus 598 ~~E~~~~~V~vr~r~~~~~~~v~~~e~ 624 (642)
T 1qf6_A 598 DKEVESGKVAVRTRRGKDLGSMDVNEV 624 (642)
T ss_dssp TTTGGGCCEEEEESSSCEEEEECHHHH
T ss_pred chhhhcCeEEEEECCCCceEEEEHHHH
Confidence 999999999999999999999999876
No 22
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=1.5e-44 Score=378.87 Aligned_cols=344 Identities=20% Similarity=0.246 Sum_probs=267.7
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHH-HHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeC--CCCeEeeCCCC
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--GNRRVALRPEL 149 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~--~G~~l~LRpD~ 149 (484)
.++|++||+|.++++++.|++.+++.+ +++||++|.||+|++.++|.+ +|++ +.++||++.|+ +|+.++|||+.
T Consensus 52 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~emy~~~d~~~~~~~l~LrPt~ 130 (460)
T 3uh0_A 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEK-SGHWENYADDMFKVETTDEEKEEYGLKPMN 130 (460)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHH-HTCTTTSGGGSCEECC------CEEECSCS
T ss_pred CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHh-cCCccccccceEEEecCCCCCceEEEcccC
Confidence 589999999999999999999999999 999999999999999999986 6875 67899999887 58999999999
Q ss_pred hHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC--CC--CccceEEeEEEEEcCCChhhHHH---HHHHHHHHH-HHc
Q 011527 150 TPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFF-KRI 220 (484)
Q Consensus 150 T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~--~g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~~l-~~l 220 (484)
|+++++++.+... +.++|+|+||+|+|||+|+++ .| |.|||+|.|+++|+.++ .+++| ++.++.+++ +.|
T Consensus 131 ~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e-~~~~e~~~~i~~~~~~~~~~l 209 (460)
T 3uh0_A 131 CPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPS-QVKSEIFNSLKLIDIVYNKIF 209 (460)
T ss_dssp HHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 9999999887654 468999999999999999875 78 99999999999998764 45555 899999999 999
Q ss_pred CCC------CCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC
Q 011527 221 GIT------ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (484)
Q Consensus 221 gl~------~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~ 294 (484)
|++ ..++.+.++++. -+..|-.+. |+
T Consensus 210 Gl~~~~~~~~~~~~~~l~t~p-----e~~~G~~~~----------------w~--------------------------- 241 (460)
T 3uh0_A 210 PFVKGGSGAESNYFINFSTRP-----DHFIGDLKV----------------WN--------------------------- 241 (460)
T ss_dssp CCC-----CCSSCEEEEECCC-----SSCCSCHHH----------------HH---------------------------
T ss_pred CCCCcccccccceEEEEccCC-----cccCCCHHH----------------HH---------------------------
Confidence 996 113777776532 000110000 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCcee-ceeEEEEecCCCcc---ee----ecCccccHh-Hhhc
Q 011527 295 LTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYT-GIVFECFDRDGKLR---AI----CGGGRYDQL-LSTF 365 (484)
Q Consensus 295 ~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYt-G~vFe~~~~~g~~~---~i----~~GGRYD~L-~~~f 365 (484)
.+-..| .++|+..|.+ +.+++. .-.||. -+.|.+.+..|..- +| ..++|||-. ...-
T Consensus 242 ------~ae~~L---~~~l~~~g~~--~~~~~g---~gafygpkid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~ 307 (460)
T 3uh0_A 242 ------HAEQVL---KEILEESGKP--WKLNPG---DGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQD 307 (460)
T ss_dssp ------HHHHHH---HHHHHHHTCC--EEEETT---CSCSSCCEEEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTT
T ss_pred ------HHHHHH---HHHHHHhCCC--eeECCC---ccccccceEEEEEEccCCCeeeecccccccccccccceEEECCC
Confidence 011111 2234445654 666655 334662 23444444444321 12 134666644 2233
Q ss_pred CCCCCcee----cccchHHHHHHHHHHc--CCCCCCCCCccEEEEEcCcc---hHHHHHHHHHHHHHC------------
Q 011527 366 GGDDIPAC----GFGFGDAVILELLKEK--GLLPPLNHQVENIVCALDHN---LQGAASMVATTLRGK------------ 424 (484)
Q Consensus 366 ~~~~~pav----Gfsigierl~~~l~e~--~~~p~~~~~~~v~Vi~~~~~---~~~~a~~la~~Lr~~------------ 424 (484)
|++..|++ +|+ ++||++.+|.+. +.+|.+.+|.||+|++++++ ...+|.++++.||++
T Consensus 308 g~~~~P~~ih~~~~G-g~eRli~~Lie~~~g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~ 386 (460)
T 3uh0_A 308 NSYKRPIMIHRATFG-SIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLN 386 (460)
T ss_dssp SCEECCEEEEEEEEE-EHHHHHHHHHHHHTTCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTT
T ss_pred CCccCcEEEecCcch-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccC
Confidence 44457877 477 899999999875 68898899999999999987 789999999999998
Q ss_pred --CCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCc-eeeeccCcC
Q 011527 425 --GQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGE-QYEIKLDEL 483 (484)
Q Consensus 425 --Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~-~~~v~~~el 483 (484)
|++|++|+++.++++++++|++.|+||+|+||++|+++|+|+||++.+++ |..|+++++
T Consensus 387 ~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el 448 (460)
T 3uh0_A 387 DWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQI 448 (460)
T ss_dssp CCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGGTTSCEEECHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCCCceeEEeeHHHH
Confidence 99999999889999999999999999999999999999999999999999 999998876
No 23
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=3.1e-44 Score=380.49 Aligned_cols=321 Identities=20% Similarity=0.279 Sum_probs=271.7
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC----CCeEeeCC
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRRVALRP 147 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~----G~~l~LRp 147 (484)
+.++|++||+|.+++++++|++.+++++++ ||++|.||+|++.++|.+++|+. +.++||+|.|++ ++.++|||
T Consensus 58 ~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrP 136 (501)
T 1nj1_A 58 YPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRP 136 (501)
T ss_dssp CSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECS
T ss_pred CCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEcc
Confidence 467999999999999999999999999999 99999999999999998767764 689999999875 78999999
Q ss_pred CChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcC-CCC--CccceE-EeEEEEEcCCChhhHHH---HHHHHHHHHHH
Q 011527 148 ELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVTAEAE---LISSIITFFKR 219 (484)
Q Consensus 148 D~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~-~~g--r~rEf~-Q~g~eiig~~~~~adaE---vi~l~~~~l~~ 219 (484)
+.|++++|+++.+.. +.++|+|+||+|+|||+|++ ++| |.|||+ |+++++++.+...+++| ++.++.++++.
T Consensus 137 t~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 216 (501)
T 1nj1_A 137 TSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNS 216 (501)
T ss_dssp SSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998755 45899999999999999988 889 999999 99999999887788877 58999999999
Q ss_pred cCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhh
Q 011527 220 IGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE 299 (484)
Q Consensus 220 lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~ 299 (484)
|||+ |.+.++... + .+
T Consensus 217 Lgl~---~~~~~~~~~------------e---------------------------~~---------------------- 232 (501)
T 1nj1_A 217 LGIP---YLITRRPPW------------D---------------------------KF---------------------- 232 (501)
T ss_dssp HTCC---CEEEECCTT------------T---------------------------SC----------------------
T ss_pred CCCe---EEEEeCCch------------h---------------------------hc----------------------
Confidence 9995 777765310 0 00
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCC-Cceecccch
Q 011527 300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDD-IPACGFGFG 378 (484)
Q Consensus 300 ~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~-~pavGfsig 378 (484)
.+....+.+|..+..|..++.|.+|++ |...+.+.|+||++- . |+.. .+.+||+++
T Consensus 233 ----------------~~a~~~~die~~l~~g~~~ei~t~~~l----g~~~a~~~~~ry~~~--~-g~~~~~h~~g~Gig 289 (501)
T 1nj1_A 233 ----------------PGSEYTVAFDTLMPDGKTLQIGTVHNL----GQTFARTFEIKFETP--E-GDHEYVHQTCYGLS 289 (501)
T ss_dssp ----------------TTCSEEEEEEEECTTSCEEEEEEEEEE----ETHHHHHHTCEEECT--T-SCEEECEEEEEEEC
T ss_pred ----------------CCcccceEEEEEcCCCCEEEEEEEEec----cccchhhcCeEEECC--C-CCEEeeeeccccHH
Confidence 001112345555666777888888865 233467789999862 2 3322 446899999
Q ss_pred HHHHHHHHHHc-----C-CCCCCCCCccEEEEEc-C-c---chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHc
Q 011527 379 DAVILELLKEK-----G-LLPPLNHQVENIVCAL-D-H---NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARI 447 (484)
Q Consensus 379 ierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~-~-~---~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~ 447 (484)
+|++.+|.+. | .+|.+.+|.+|+|+++ + + +..++|.++++.||++|++|++++++.++++++++|++.
T Consensus 290 -eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~~~ 368 (501)
T 1nj1_A 290 -DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMR 368 (501)
T ss_dssp -THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHE
T ss_pred -HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhc
Confidence 9999999764 2 4788889999999999 5 4 578899999999999999999998888999999999999
Q ss_pred CCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 448 NAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 448 gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
|+|++|+||++|+++|+|+||++.+++|..|++++|
T Consensus 369 G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el 404 (501)
T 1nj1_A 369 GVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGI 404 (501)
T ss_dssp ECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTH
T ss_pred CCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHH
Confidence 999999999999999999999999999999999986
No 24
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=4e-41 Score=367.32 Aligned_cols=375 Identities=17% Similarity=0.180 Sum_probs=237.2
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHH-HcCCeeecCCccccHHHhhhhhccc--ccc---------ceEEEEeC-----
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRD---------QLYCFEDR----- 138 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~-~~Gy~eI~tP~le~~~l~~~~~g~~--~~~---------~~~~~~D~----- 138 (484)
++|++||+|.+++++++|++.|++.|. ..||++|.||+|++.++|.. +|++ +.+ ++|++ |+
T Consensus 90 ~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~-SGH~~~f~d~m~~~~~~~e~yr~-D~l~e~~ 167 (693)
T 2zt5_A 90 VSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKT-SGHVDKFADFMVKDVKNGECFRA-DHLLKAH 167 (693)
T ss_dssp CTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHH-HTHHHHCEEEEEEBSSSCCEEEH-HHHHHHH
T ss_pred CCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhh-cCCcccccccceeeccCCceeec-cHhHHHH
Confidence 599999999999999999999999998 56999999999999999986 6764 333 55554 33
Q ss_pred --------------------------------------------------------------------CCCeEeeCCCCh
Q 011527 139 --------------------------------------------------------------------GNRRVALRPELT 150 (484)
Q Consensus 139 --------------------------------------------------------------------~G~~l~LRpD~T 150 (484)
+|+.+.||||.|
T Consensus 168 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEta 247 (693)
T 2zt5_A 168 LQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETA 247 (693)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSH
T ss_pred HHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccccc
Confidence 468899999999
Q ss_pred HHH----HHHHHHcCCCCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChh--------hHH--------
Q 011527 151 PSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT--------AEA-------- 207 (484)
Q Consensus 151 ~~i----aR~~~~~~~~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~--------ada-------- 207 (484)
.++ .|.+..+++ ++|+++||||++||+| +|+.| |.|||+|+++|+|+.++.. +|+
T Consensus 248 qg~f~~f~r~~~~~~~--~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~ 325 (693)
T 2zt5_A 248 QGIFLNFKRLLEFNQG--KLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAK 325 (693)
T ss_dssp HHHHTTHHHHHHHTTT--CSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHH
T ss_pred hHHHHHHHHHHHHhCc--CCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhh
Confidence 999 888877644 7899999999999999 89999 9999999999999976543 111
Q ss_pred ------------------------H----HHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhh-hHhHHH
Q 011527 208 ------------------------E----LISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFG-KVCIII 258 (484)
Q Consensus 208 ------------------------E----vi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~-~v~~~l 258 (484)
| +|.++.+++..+|++...+.+.- |. -+. .+....+... ++..-.
T Consensus 326 ~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~-~~--~~e---~a~ya~~~~d~e~~~~~ 399 (693)
T 2zt5_A 326 AQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQ-HM--ENE---MAHYACDCWDAESKTSY 399 (693)
T ss_dssp HHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEE-CC--GGG---SCTTCSSEEEEEEEETT
T ss_pred hhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEec-cC--chh---hccchhhhhhehhhccC
Confidence 2 78899999999999743344422 20 000 0000000000 000000
Q ss_pred Hh-----hccCCHHHHHHHHHhcC--CC------H-HHHHH---------HHHHcc---CCChhhhhHHHHHHHHHHHHH
Q 011527 259 DK-----IEKLPLDVIKNDLKSAG--MS------E-AAIEE---------LLRVLS---IKSLTELEGEAVADLKLLFSL 312 (484)
Q Consensus 259 ~~-----~~~~~~~~l~~~L~~~g--~~------~-~~~~~---------l~~l~~---~~~~~~l~~~~~~~L~~l~~~ 312 (484)
.. ....+.-.+...+...+ +. . ..++. +...+. +.-.+.+..+..+++.++...
T Consensus 400 g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~ 479 (693)
T 2zt5_A 400 GWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479 (693)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHH
Confidence 00 00000001111111100 00 0 00000 000000 000123334445566666677
Q ss_pred HHhcCCcceEEEecCCccCCCceeceeEEEEecC-CCc--ceeecCccccHhHhhcCCCCCcee-cccchHHHHHHHHHH
Q 011527 313 AEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRD-GKL--RAICGGGRYDQLLSTFGGDDIPAC-GFGFGDAVILELLKE 388 (484)
Q Consensus 313 l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~-g~~--~~i~~GGRYD~L~~~f~~~~~pav-Gfsigierl~~~l~e 388 (484)
|+.+| ..+|.+| |++|++.... +.. .....|||| .|+| |+|+|++|++.+|.+
T Consensus 480 L~~~g-~i~i~vd-----------Gt~Fei~~~~~~~~~y~~~~~Ggry-----------~P~Vi~~s~GigRli~aLie 536 (693)
T 2zt5_A 480 LNEKG-EFTIETE-----------GKTFQLTKDMINVKRFQKTLYVEEV-----------VPNVIEPSFGLGRIMYTVFE 536 (693)
T ss_dssp --------------------------------------------CCEEE-----------CCEEEEEEEEHHHHHHHHHH
T ss_pred HHhcC-CEEEEEC-----------CEEEEecccccceeeEEeccCCcEe-----------cCcceeCeehHHHHHHHHHH
Confidence 77777 2235555 6888875310 000 011256666 6877 999999999999866
Q ss_pred c-------------CCCCCCCCCccEEEEEcCcc--hHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEE
Q 011527 389 K-------------GLLPPLNHQVENIVCALDHN--LQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLI 453 (484)
Q Consensus 389 ~-------------~~~p~~~~~~~v~Vi~~~~~--~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~i 453 (484)
. +.+|.+.+|++|+|++++++ ...+|.++++.||++|++|++++++.++++++++|++.|+||+|
T Consensus 537 ~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~I 616 (693)
T 2zt5_A 537 HTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGV 616 (693)
T ss_dssp HHEEECSSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEE
T ss_pred HhccccccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 4 25677788999999999865 78999999999999999999998888999999999999999999
Q ss_pred EEcCCcc--ccCeEEEEECCCCceeeeccCcC
Q 011527 454 LVGTTEW--QKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 454 iig~~e~--~~~~v~vk~~~~~~~~~v~~~el 483 (484)
+||++|+ ++|+|+||++.+++|..|+++++
T Consensus 617 iIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el 648 (693)
T 2zt5_A 617 TIDFDTVNKTPHTATLRDRDSMRQIRAEISEL 648 (693)
T ss_dssp EECHHHHTSSSCEEEEEETTTCCEEEEETTTH
T ss_pred EEcchhhhccCCEEEEEECCCCceEEEeHHHH
Confidence 9999999 99999999999999999999986
No 25
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=324.72 Aligned_cols=330 Identities=15% Similarity=0.174 Sum_probs=246.7
Q ss_pred ccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCC----e
Q 011527 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----R 142 (484)
Q Consensus 69 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~----~ 142 (484)
.+++...++|+++|+|.++++++.|++.+++.+.++||++|.||+|++.++|.+.+|++ +.++||.+.|.+++ .
T Consensus 43 ~lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~ 122 (519)
T 4hvc_A 43 EMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEP 122 (519)
T ss_dssp TCEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEE
T ss_pred CCeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccc
Confidence 45666678999999999999999999999999999999999999999999998767764 68899999987654 6
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHHH---HHHHHHH
Q 011527 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIIT 215 (484)
Q Consensus 143 l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~adaE---vi~l~~~ 215 (484)
++|||+.|+++++++.+... +.+||+|+||+|+|||+| +++.| |.|||+|.++++++.+...+++| ++.++.+
T Consensus 123 l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~ 202 (519)
T 4hvc_A 123 IAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQ 202 (519)
T ss_dssp EEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765 467999999999999999 77788 99999999999988877777776 5688999
Q ss_pred HHHHc-CCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC
Q 011527 216 FFKRI-GITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (484)
Q Consensus 216 ~l~~l-gl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~ 294 (484)
+++.| +++ +.+...+. ++ .+ .|-+. .. +
T Consensus 203 i~~~ll~lp---~~~~~~t~------------~e-~~------------------------~Ga~~--------t~---~ 231 (519)
T 4hvc_A 203 VYEELLAIP---VVKGRKTE------------KE-KF------------------------AGGDY--------TT---T 231 (519)
T ss_dssp HHHTTSCCC---CEEEECCT------------TT-SC------------------------TTSSE--------EE---E
T ss_pred HHHHhcCCc---ceeeecCC------------cc-cc------------------------CCchh--------he---e
Confidence 99997 774 54433221 00 00 00000 00 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCC--Cce
Q 011527 295 LTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDD--IPA 372 (484)
Q Consensus 295 ~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~--~pa 372 (484)
++. + + ++..|. .-.|++|++-.. .+-.-+=+|-+- .-.++. +.-
T Consensus 232 iEa------------------~-------~-p~~gr~--~q~gT~~~Lg~~----~s~~~~i~y~d~--~~~g~~~~vh~ 277 (519)
T 4hvc_A 232 IEA------------------F-------I-SASGRA--IQGGTSHHLGQN----FSKMFEIVFEDP--KIPGEKQFAYQ 277 (519)
T ss_dssp EEE------------------E-------E-TTTTEE--EEEEEEEEEETH----HHHHHTCEEECT--TSTTCEEECEE
T ss_pred eee------------------e-------e-ccCCCE--Eeecccccccch----hhhhcCcEEecc--ccCCCEEEEEE
Confidence 000 0 0 011110 012333332100 000000001000 000111 222
Q ss_pred ecccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcC----------cchHHHHHHHHHHHHHCCCeEEEEeCCC-
Q 011527 373 CGFGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALD----------HNLQGAASMVATTLRGKGQSVDLVLESK- 435 (484)
Q Consensus 373 vGfsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~----------~~~~~~a~~la~~Lr~~Gi~v~~~~~~~- 435 (484)
.+|+++ +|++.+|.+. | .+|.+.+|.+|+|+|++ ++..++|.++++.|+++|++|++|+++.
T Consensus 278 ~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~ 356 (519)
T 4hvc_A 278 NSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNY 356 (519)
T ss_dssp EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSS
T ss_pred ccccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 356667 9999998874 3 47888999999999997 2467889999999999999999998875
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcCC
Q 011527 436 PLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484 (484)
Q Consensus 436 ~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~elv 484 (484)
++++++++|++.|+|++|+||++|+++|+|+||++.++++..|++++|+
T Consensus 357 s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~ 405 (519)
T 4hvc_A 357 SPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAE 405 (519)
T ss_dssp CHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHH
T ss_pred CHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHH
Confidence 8999999999999999999999999999999999999999999998863
No 26
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=7.2e-38 Score=332.08 Aligned_cols=341 Identities=16% Similarity=0.150 Sum_probs=247.0
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHHHHH--HcCCeeecCCccccHHHhhhhhccc--cccceEEE--------------
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSR--LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCF-------------- 135 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~~f~--~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~-------------- 135 (484)
..++|++||+|.+++++++|++.+++.+. ++||++|.||+|++.++|.. +|++ +.+.||+.
T Consensus 26 ~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~-SGh~~~f~d~m~~~~~~~~~~r~d~l~~ 104 (505)
T 1ati_A 26 GGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHY-SGHEATFADPMVDNRITKKRYRLDHLLK 104 (505)
T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHH-TSHHHHCEEEEEEC--------------
T ss_pred CCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHh-cCChhhcCccceeccccccccchhhhhh
Confidence 45799999999999999999999999999 99999999999999999987 6664 45556552
Q ss_pred -----------------------------E-----------------eCC-------------------------CCeEe
Q 011527 136 -----------------------------E-----------------DRG-------------------------NRRVA 144 (484)
Q Consensus 136 -----------------------------~-----------------D~~-------------------------G~~l~ 144 (484)
. |.+ ++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~ 184 (505)
T 1ati_A 105 EQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAY 184 (505)
T ss_dssp ------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEE
T ss_pred hhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCcccccccee
Confidence 1 111 35789
Q ss_pred eCCCChHHH----HHHHHHcCCCCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhh--HHHHHHHHHH
Q 011527 145 LRPELTPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTA--EAELISSIIT 215 (484)
Q Consensus 145 LRpD~T~~i----aR~~~~~~~~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~a--daEvi~l~~~ 215 (484)
||||.|+++ +|.+..+.+ ++|+|+||+|+|||+| +|+.| |.|||+|.++|+|+.++... +++++.++.+
T Consensus 185 LRPE~t~~i~~~~~~~~~sy~r--~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~ 262 (505)
T 1ati_A 185 LRPETAQGIFVNFKNVLDATSR--KLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLK 262 (505)
T ss_dssp ECSSSHHHHHHTHHHHHHHHTC--CSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred ecccchhHHHHHHHHHHHhcCC--CCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999 676665422 6899999999999999 89989 99999999999999876554 6789999999
Q ss_pred HHHHcCCCCCceEEEeCCHHHHHHHHHhCC-CCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCC
Q 011527 216 FFKRIGITASDVGFRISSRKVLQEVLRCHS-IPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (484)
Q Consensus 216 ~l~~lgl~~~~~~i~i~~~~il~~~l~~~g-~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~ 294 (484)
++++||++ .+.+.+.... . +.+. ...+.. .+ +.+.+..+.+ + .|+ . .+
T Consensus 263 i~~~LGl~--~~~v~~~~~~--~---~~~~~~~~~~~-d~----E~~~p~~~~e----~--~g~-----------~-~~- 311 (505)
T 1ati_A 263 WWQEMGLS--RENLVPYQQP--P---ESSAHYAKATV-DI----LYRFPHGSLE----L--EGI-----------A-QR- 311 (505)
T ss_dssp HHHHTTCC--GGGEEEEECC--T---TTSCTTCSEEE-EE----EEEETTEEEE----E--EEE-----------E-EC-
T ss_pred HHHHcCCC--eEEEEECCCC--h---HhhhcccHHHH-hH----HhhcCCCCcc----c--hhh-----------h-cc-
Confidence 99999997 3334432210 0 0010 000000 00 0000000000 0 000 0 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCC-cceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCc-e
Q 011527 295 LTELEGEAVADLKLLFSLAEKFGY-SDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIP-A 372 (484)
Q Consensus 295 ~~~l~~~~~~~L~~l~~~l~~~g~-~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~p-a 372 (484)
.+. +|.... +..+. ...+++|+ +-|+++.|+....+ +|+|| .| +
T Consensus 312 ~d~-------~L~~~~---~~~~~~~~~~~~~~------n~~~~~~~~y~d~~-------g~~~y-----------~p~v 357 (505)
T 1ati_A 312 TDF-------DLGSHT---KDQEALGITARVLR------NEHSTQRLAYRDPE-------TGKWF-----------VPYV 357 (505)
T ss_dssp TTH-------HHHHHC---SSTTTTTCCSCCCC------CSCCCSCCCEECSS-------SCCEE-----------CCEE
T ss_pred cce-------ecchhh---ccccccceeeeecc------cccceeEEEEEcCC-------CCeee-----------cceE
Confidence 000 011100 00011 00122222 33788888776532 55677 35 8
Q ss_pred ecccchHHHHHHHHHHc---------C------CCCCCCCCccEEEEEcCc---chHHHHHHHHHHHHHCC-CeEEEEeC
Q 011527 373 CGFGFGDAVILELLKEK---------G------LLPPLNHQVENIVCALDH---NLQGAASMVATTLRGKG-QSVDLVLE 433 (484)
Q Consensus 373 vGfsigierl~~~l~e~---------~------~~p~~~~~~~v~Vi~~~~---~~~~~a~~la~~Lr~~G-i~v~~~~~ 433 (484)
+|+++|++|++.++.+. | .+|.+.+|++|+|+++++ +...+|.++++.||++| ++|++++.
T Consensus 358 ig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~ 437 (505)
T 1ati_A 358 IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT 437 (505)
T ss_dssp EEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC
T ss_pred EEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC
Confidence 99999999999888764 2 367677899999999987 67899999999999999 99999877
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccc---------cCeEEEEECCCCceeeeccCcC
Q 011527 434 SKPLKWVFKRAARINAQRLILVGTTEWQ---------KGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 434 ~~~~~~~~~~a~~~gi~~~iiig~~e~~---------~~~v~vk~~~~~~~~~v~~~el 483 (484)
.++++++++|++.|+||+|+||++|++ +|+|+||++.+++|..|+++++
T Consensus 438 -~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el 495 (505)
T 1ati_A 438 -GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDEL 495 (505)
T ss_dssp -SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHH
T ss_pred -CCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHH
Confidence 899999999999999999999999999 9999999999999999998876
No 27
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=4.7e-37 Score=323.70 Aligned_cols=327 Identities=20% Similarity=0.194 Sum_probs=244.7
Q ss_pred ccccc-cCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC----CC
Q 011527 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NR 141 (484)
Q Consensus 69 ~~~~~-~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~----G~ 141 (484)
.+++. +.++|+++|+|.++++++.|++.+++.++++||++|.||+|++.++|.+.+|++ +.++||.+.|++ ++
T Consensus 36 glid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~ 115 (518)
T 3ial_A 36 ELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEE 115 (518)
T ss_dssp TCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEE
T ss_pred CCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCc
Confidence 45665 689999999999999999999999999999999999999999999997656764 689999999875 68
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeC-cCCCC--CccceEEeEEEEEcCCChhhHHHH---HHHHH
Q 011527 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAEL---ISSII 214 (484)
Q Consensus 142 ~l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e-~~~~g--r~rEf~Q~g~eiig~~~~~adaEv---i~l~~ 214 (484)
.++|||+.|+++++++++... +.+||+|+||+|+|||+| +++.| |.|||+|.++++||.+...+++|+ +.++.
T Consensus 116 ~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 116 RLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVID 195 (518)
T ss_dssp EEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 999999999999999988765 468999999999999999 78888 999999999999988777777764 56689
Q ss_pred HHH-HHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC
Q 011527 215 TFF-KRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (484)
Q Consensus 215 ~~l-~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~ 293 (484)
+++ +.|||+ +.+..- ++ + ++ . .
T Consensus 196 ~i~~~~LGlp---~~~~~~--------------~~-~-----------e~-------------~------------~--- 218 (518)
T 3ial_A 196 TIFSDELCFK---GQKLRR--------------VC-W-----------DR-------------F------------P--- 218 (518)
T ss_dssp HHHTTTTCCC---CEEEEE--------------CG-G-----------GC-------------C------------T---
T ss_pred HHHHHhcCCc---EEeeec--------------Ch-h-----------hc-------------c------------C---
Confidence 999 899995 432210 00 0 00 0 0
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCce-
Q 011527 294 SLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPA- 372 (484)
Q Consensus 294 ~~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pa- 372 (484)
|....+.+|.-+.-|...=.|.+|..-. ..+=.-+=+|-+ .-|....|.
T Consensus 219 -----------------------gA~yt~~iE~~~pdgr~ie~gt~~~Lg~----~~s~rf~i~y~d---~~g~~~~~h~ 268 (518)
T 3ial_A 219 -----------------------GADYSEVSDVVMPCGRVLQTAGIHNLGQ----RFSSTFDILYAN---KANESVHPYL 268 (518)
T ss_dssp -----------------------TCSEEEEEEEECTTSCEEEEEEEEEEET----HHHHHTTCCEEC---TTCCEECCEE
T ss_pred -----------------------CCccceEEEEEcCCCCEEEEeceecccc----hhhhhcCcEEEC---CCCCEeeeEE
Confidence 0000111221111111111122222100 000000001100 001111222
Q ss_pred ecccchHHHHHHHHHHc-----C-CCCCCCCCccEEEEEcC----------cchHHHHHHHHHHHHHC-CCeEEEEeC-C
Q 011527 373 CGFGFGDAVILELLKEK-----G-LLPPLNHQVENIVCALD----------HNLQGAASMVATTLRGK-GQSVDLVLE-S 434 (484)
Q Consensus 373 vGfsigierl~~~l~e~-----~-~~p~~~~~~~v~Vi~~~----------~~~~~~a~~la~~Lr~~-Gi~v~~~~~-~ 434 (484)
..++++ +|++.+|.+. | .+|++.+|++|+|+|++ ++..++|.++++.|+++ |++|++|++ +
T Consensus 269 ~~~G~~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~ 347 (518)
T 3ial_A 269 TCAGIS-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFS 347 (518)
T ss_dssp EEEEEE-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTT
T ss_pred eccchH-HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCC
Confidence 123344 9999988764 2 68889999999999997 34678999999999999 999999988 7
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCc--eeeeccCcC
Q 011527 435 KPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGE--QYEIKLDEL 483 (484)
Q Consensus 435 ~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~--~~~v~~~el 483 (484)
.++++++++|+.+|+|++|+||++|+++|+|+|+++.+++ +..|++++|
T Consensus 348 ~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el 398 (518)
T 3ial_A 348 KSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEV 398 (518)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHH
Confidence 8999999999999999999999999999999999999999 999998876
No 28
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.95 E-value=5.9e-28 Score=252.31 Aligned_cols=317 Identities=15% Similarity=0.121 Sum_probs=208.5
Q ss_pred ccc-cCChHhHHHHHHHHHHHHHHH--HHcCCeeecCCccccHHHhhhh-hcc---c--cccc----------eEEEE-e
Q 011527 78 GTR-DFPPEDMRLRNWLFHNFQEVS--RLFGFEEVDFPVLESEALFIRK-AGE---E--IRDQ----------LYCFE-D 137 (484)
Q Consensus 78 G~~-d~lP~~~~~~~~i~~~i~~~f--~~~Gy~eI~tP~le~~~l~~~~-~g~---~--~~~~----------~~~~~-D 137 (484)
|+. ||+|.++.++++|++.+++.+ .+.||.+|+||++.+.++|... .|+ + +.++ |+.++ +
T Consensus 52 G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~ 131 (454)
T 1g5h_A 52 GCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLEN 131 (454)
T ss_dssp CCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHH
T ss_pred cceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 766 999999999999999888874 6899999999999998877541 233 1 2222 22221 1
Q ss_pred CCCCeEeeCCCChHHHHHHHHHcCC--CCCCCeeEEEecCeee---eC-cCCCC--CccceEEeEEEEEcCCChhhHH--
Q 011527 138 RGNRRVALRPELTPSLARLVIQKGK--SVSLPLKWFAVGQCWR---YE-RMTRG--RRREHYQWNMDIIGVPAVTAEA-- 207 (484)
Q Consensus 138 ~~G~~l~LRpD~T~~iaR~~~~~~~--~~~lPlk~yyig~vfR---~e-~~~~g--r~rEf~Q~g~eiig~~~~~ada-- 207 (484)
..++.++|||+.+..+...+.+... ..+||++++++|+||| +| .+..| |.|||+|.++++|..++. ++.
T Consensus 132 ~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~-~~e~~ 210 (454)
T 1g5h_A 132 LLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRT-SSQWL 210 (454)
T ss_dssp HHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHH-HHHHH
T ss_pred hcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhh-HHHHH
Confidence 1245789999988888776665422 2379999999999999 58 45454 999999999999986432 222
Q ss_pred -HHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHH
Q 011527 208 -ELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEEL 286 (484)
Q Consensus 208 -Evi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l 286 (484)
.++..+.++++.||++...+... . +. ++ . . .+.
T Consensus 211 ~~~~~~~~~~~~~lgi~~~~~r~~--~----------~~-~~-~---a---~~~-------------------------- 244 (454)
T 1g5h_A 211 DFWLRHRLLWWRKFAMSPSNFSSA--D----------CQ-DE-L---G---RKG-------------------------- 244 (454)
T ss_dssp HHHHHHHHHHHHTTCSSGGGEEEE--E----------EE-CT-T---S---CEE--------------------------
T ss_pred HHHHHHHHHHHHHcCCCceeEEec--C----------CH-HH-H---H---hcC--------------------------
Confidence 25788888999999864333311 0 00 00 0 0 000
Q ss_pred HHHccCCChhhhhHHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCc--ceeecCccccHhHhh
Q 011527 287 LRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL--RAICGGGRYDQLLST 364 (484)
Q Consensus 287 ~~l~~~~~~~~l~~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~--~~i~~GGRYD~L~~~ 364 (484)
.+ +.+... +..+- |+.....+.. ...-.+.|+| +.-
T Consensus 245 -----------------------------~~----ie~~~p------~g~~e-~~g~~~~td~~l~~~~~~s~~~--l~y 282 (454)
T 1g5h_A 245 -----------------------------SK----LYYSFP------WGKEP-IETLWNLGDQELLHTYPGNVST--IQG 282 (454)
T ss_dssp -----------------------------EE----EEEEET------TEEEE-EEEEEEEESHHHHHHSTTCGGG--SCE
T ss_pred -----------------------------CC----cEEecC------CCceE-EEEecCCCHHHHHhccCCceee--EEE
Confidence 00 000000 00000 0000000000 0000001111 000
Q ss_pred c-CC-CCCcee-cccchHHHHHHH-HHHc----------C--------CCCCCCCCccEEEE-EcC--cchHHHHHHHHH
Q 011527 365 F-GG-DDIPAC-GFGFGDAVILEL-LKEK----------G--------LLPPLNHQVENIVC-ALD--HNLQGAASMVAT 419 (484)
Q Consensus 365 f-~~-~~~pav-Gfsigierl~~~-l~e~----------~--------~~p~~~~~~~v~Vi-~~~--~~~~~~a~~la~ 419 (484)
. ++ +..|.| +.++|++|++.+ |.+. | .+|.+.+|++|+|+ +.+ ++..++|.++++
T Consensus 283 ~d~~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~ 362 (454)
T 1g5h_A 283 RDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLN 362 (454)
T ss_dssp EETTEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHH
T ss_pred ECCCCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHH
Confidence 0 11 125654 788999999744 4432 3 67889999999999 776 567899999999
Q ss_pred HHHHCCCeEE--EEeC-CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 420 TLRGKGQSVD--LVLE-SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 420 ~Lr~~Gi~v~--~~~~-~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
.||++|++|+ ++++ +.++++++++|++.|+||+|+||++|+++|+|+||++.+++|..|+++++
T Consensus 363 ~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el 429 (454)
T 1g5h_A 363 ELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKL 429 (454)
T ss_dssp HHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSH
T ss_pred HHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHH
Confidence 9999999996 6665 67999999999999999999999999999999999999999999999986
No 29
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=235.01 Aligned_cols=306 Identities=12% Similarity=0.060 Sum_probs=203.5
Q ss_pred Cccc-cCChHhHHHHHHHHHHHHHHHHH-cC-CeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHH
Q 011527 77 KGTR-DFPPEDMRLRNWLFHNFQEVSRL-FG-FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSL 153 (484)
Q Consensus 77 ~G~~-d~lP~~~~~~~~i~~~i~~~f~~-~G-y~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~i 153 (484)
.|.+ ||+|.++.+++.|++.+++.+.. .| +.+|+||..++ |.. +|++ +-|+ ++|||+.+..+
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~---~~~-SGH~---d~~~--------~~LRPeTaqg~ 157 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP---GPL-LPGD---SAFR--------GGLRENLLHGA 157 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCC---SCC-CSSC---SCCT--------TB-CSCSHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccccc---ccc-Ccch---hhhc--------ceECCCCChhH
Confidence 3455 99999999999999977666653 66 66699999554 544 7876 1232 89999988887
Q ss_pred HHHHHHcCC-C-CCCCeeEEEecCeeeeCc----CCCC--CccceEEeEEEEEcCCChhhH--HHHHHHHHHHHHHcCCC
Q 011527 154 ARLVIQKGK-S-VSLPLKWFAVGQCWRYER----MTRG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGIT 223 (484)
Q Consensus 154 aR~~~~~~~-~-~~lPlk~yyig~vfR~e~----~~~g--r~rEf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~ 223 (484)
.-.+.+... + .+||+++.++|+|||+|. +..| |.|||+|..+++|..++...+ ..++..+.++++.||++
T Consensus 158 ~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~ 237 (459)
T 3ikl_A 158 LEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMS 237 (459)
T ss_dssp HHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 766544433 2 389999999999999993 4444 899999999999987654333 34788899999999997
Q ss_pred CCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhhHHHH
Q 011527 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAV 303 (484)
Q Consensus 224 ~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~~~~~ 303 (484)
+.++.+.- | . +++. .++. +++......
T Consensus 238 ~~~~r~~~-~-----------~-~eeA-------~~~~--------------------------------DiE~~~p~G- 264 (459)
T 3ikl_A 238 PSNFSSSD-C-----------Q-DEEG-------RKGN--------------------------------KLYYNFPWG- 264 (459)
T ss_dssp GGGEEEEE-E-----------C-CSSS-------SCEE--------------------------------EEEEECSSC-
T ss_pred hhhEEEee-c-----------C-chHH-------Hhhc--------------------------------CeEEEcCCc-
Confidence 54554432 0 0 0000 0000 000000000
Q ss_pred HHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCC-CCCc-eecccchHHH
Q 011527 304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGG-DDIP-ACGFGFGDAV 381 (484)
Q Consensus 304 ~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~-~~~p-avGfsigier 381 (484)
..+-.|+.+ ..|+.+.+. ..+.|-+|. ..-+. +-+| .+..++|++|
T Consensus 265 --------~~E~~g~sn--~tDfqL~~~-------------------~~~~~~~~~---~~dg~~k~~P~vi~~s~Gv~R 312 (459)
T 3ikl_A 265 --------KELIETLWN--LGDHELLHM-------------------YPGNVSKLH---GRDGRKNVVPCVLSVNGDLDR 312 (459)
T ss_dssp --------EEEEEEEEE--EETHHHHHH-------------------SCSCSSSSC---CBSSSCBCCCEEEEEEEEHHH
T ss_pred --------eEEEeeeec--cchhhhhcc-------------------ccccCceeE---ccCCCeeeeeEEEEecccHHH
Confidence 000000000 011111110 001111111 00011 1245 4578889999
Q ss_pred HHHHHHHc-------------------CCCCCCCCCccEEEEEcC----cchHHHHHHHHHHHHHCCCeEE--EEeC-CC
Q 011527 382 ILELLKEK-------------------GLLPPLNHQVENIVCALD----HNLQGAASMVATTLRGKGQSVD--LVLE-SK 435 (484)
Q Consensus 382 l~~~l~e~-------------------~~~p~~~~~~~v~Vi~~~----~~~~~~a~~la~~Lr~~Gi~v~--~~~~-~~ 435 (484)
++.++.+. ..+|.+.+|++|.|+ +. ++..++|.+|+++|+++||+|+ ++++ +.
T Consensus 313 ~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~ 391 (459)
T 3ikl_A 313 GMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQS 391 (459)
T ss_dssp HHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSSSCC
T ss_pred HHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCCcCC
Confidence 87555432 257889999999999 54 4578999999999999999999 5554 57
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527 436 PLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL 483 (484)
Q Consensus 436 ~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el 483 (484)
++++++++|+++|+||+|+||++|+++|+|+||++.+++|..|+++|+
T Consensus 392 siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldel 439 (459)
T 3ikl_A 392 SLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKL 439 (459)
T ss_dssp TTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHH
T ss_pred CHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHH
Confidence 999999999999999999999999999999999999999999999886
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.83 E-value=1.9e-20 Score=193.94 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=130.7
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHHH
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~i 153 (484)
.+|+++|+|.++++++.|++.+++.+.++||++|.||+|++.++|.. +|++ +.++||++. ++.++|||+.|+++
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~---~~~l~LrPt~e~~i 236 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCE---RDNLYLIPTAEVPL 236 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCT---TTCCEECSSTHHHH
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEec---CCeEEEcCCCcHHH
Confidence 59999999999999999999999999999999999999999999977 5764 678999883 57899999999999
Q ss_pred HHHHHHcCC-CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCChh--hHHHHHHHHHHHHHHcCCC
Q 011527 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGIT 223 (484)
Q Consensus 154 aR~~~~~~~-~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~~--adaEvi~l~~~~l~~lgl~ 223 (484)
+++++.... +.++|+|+||+|+|||+|.++ .| |.|||+|.++++|+.++.. ...|++.++.++|+.|||+
T Consensus 237 ~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 237 TNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp HGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999987644 457899999999999999854 34 9999999999999987532 2368999999999999995
Q ss_pred CCceE-EEeCC
Q 011527 224 ASDVG-FRISS 233 (484)
Q Consensus 224 ~~~~~-i~i~~ 233 (484)
|. +.++.
T Consensus 317 ---~rvv~l~~ 324 (425)
T 2dq3_A 317 ---YRVVELCT 324 (425)
T ss_dssp ---EEEEECCT
T ss_pred ---eEEEEecC
Confidence 65 44433
No 31
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.80 E-value=1.2e-19 Score=187.76 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=130.0
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
..+|+++|+|.++++++.|++.+++.+.++||++|.||.|++.++|.. +|++ +.++||++. ++.++|+|+.|++
T Consensus 154 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~---d~~l~L~Pt~e~~ 229 (421)
T 1ses_A 154 SGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIA---ETDLYLTGTAEVV 229 (421)
T ss_dssp HCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGSCBBT---TSSEEECSSTHHH
T ss_pred cCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHh-cCCCCcCchhcEEEc---CCeEEEeecCcHH
Confidence 358999999999999999999999999999999999999999999987 5875 678999984 3789999999999
Q ss_pred HHHHHHHcCC-CCCCCeeEEEecCeeeeC-----cCCCC--CccceEEeEEEEEcCCC-hhhHH---HHHHHHHHHHHHc
Q 011527 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYE-----RMTRG--RRREHYQWNMDIIGVPA-VTAEA---ELISSIITFFKRI 220 (484)
Q Consensus 153 iaR~~~~~~~-~~~lPlk~yyig~vfR~e-----~~~~g--r~rEf~Q~g~eiig~~~-~~ada---Evi~l~~~~l~~l 220 (484)
+++++..... +.++|+|+|++|+|||+| +++.| |.|||+|.++++|+.++ ..++. |++.++.++|+.|
T Consensus 230 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~L 309 (421)
T 1ses_A 230 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL 309 (421)
T ss_dssp HHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999877543 457899999999999999 67888 99999999999998871 33443 6999999999999
Q ss_pred CCCCCceEE
Q 011527 221 GITASDVGF 229 (484)
Q Consensus 221 gl~~~~~~i 229 (484)
||+ |.+
T Consensus 310 GL~---~rv 315 (421)
T 1ses_A 310 ELP---YRL 315 (421)
T ss_dssp TCC---EEE
T ss_pred CCc---eEE
Confidence 995 654
No 32
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.79 E-value=3e-19 Score=186.14 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=131.2
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
...|+++|+|.++++++.|++.+++.+.++||++|.||.|++.++|.. +|++ +.++||++. ++.++|||+.|++
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~---d~~l~LrPt~e~~ 256 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEG-STSFEDFEDVIYKVE---DEDLYLIPTAEHP 256 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHT-TSCTTHHHHTCCBBT---TSSCEECSSTHHH
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHh-cCCCCCChHhhCeec---CCcEEEcCcCcHH
Confidence 458999999999999999999999999999999999999999999987 4875 678999984 4689999999999
Q ss_pred HHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCCC-------CccceEEeEEEEEcCCChhhH---HHHHHHHHHHHHHcC
Q 011527 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRG-------RRREHYQWNMDIIGVPAVTAE---AELISSIITFFKRIG 221 (484)
Q Consensus 153 iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~g-------r~rEf~Q~g~eiig~~~~~ad---aEvi~l~~~~l~~lg 221 (484)
+++++..... +.++|+|+|++|+|||+|.++.| |.|||+|.++++|+.+. .++ .|++.++.++|+.||
T Consensus 257 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe-~s~~~~~e~l~~~~~il~~LG 335 (455)
T 2dq0_A 257 LAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE-ESWEWHEKIIRNAEELFQELE 335 (455)
T ss_dssp HHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT-THHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 9999987644 46899999999999999987654 99999999999998774 232 368999999999999
Q ss_pred CCCCceEEEeCC
Q 011527 222 ITASDVGFRISS 233 (484)
Q Consensus 222 l~~~~~~i~i~~ 233 (484)
|+ |.+....
T Consensus 336 L~---yrv~~~~ 344 (455)
T 2dq0_A 336 IP---YRVVNIC 344 (455)
T ss_dssp CC---EEEEECC
T ss_pred Cc---eEEEECC
Confidence 95 6666544
No 33
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.75 E-value=1.9e-18 Score=181.84 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=126.7
Q ss_pred cCCCccccCChHhHHHHHHHHHHHHH-HHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEE-----e--------
Q 011527 74 NPPKGTRDFPPEDMRLRNWLFHNFQE-VSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE-----D-------- 137 (484)
Q Consensus 74 ~~p~G~~d~lP~~~~~~~~i~~~i~~-~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~-----D-------- 137 (484)
-.++|+++|+|.++++++.|++.+++ ++.++||++|.||+|++.++|.. +|+. +.++||++. |
T Consensus 218 ~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-SGh~~~F~demy~v~~~~~Rd~~~~e~~~ 296 (522)
T 2cja_A 218 GSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-SGHAKGVYPEIYYVCPPQTRDPDYWEEVA 296 (522)
T ss_dssp CSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-HTGGGTCGGGCCEEECBSCCCHHHHHHHH
T ss_pred eCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-cCCcCccccceeeeecCCccchhhhhhhh
Confidence 37899999999999999999999996 58999999999999999999987 6775 678999996 2
Q ss_pred -----------------CCCCeEeeCCCChHHHHHHHHHcCC-CCCCCeeEEE-ecCeeeeCcCC--C--CCccceEEeE
Q 011527 138 -----------------RGNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERMT--R--GRRREHYQWN 194 (484)
Q Consensus 138 -----------------~~G~~l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yy-ig~vfR~e~~~--~--gr~rEf~Q~g 194 (484)
++++.++|||+.|+++++++.+... +.++|+|+|+ +|+|||+| ++ . +|.|||+|.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E 375 (522)
T 2cja_A 297 DYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIE 375 (522)
T ss_dssp HHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEE
T ss_pred hhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEee
Confidence 1478999999999999999886533 4578999999 99999999 77 4 5999999999
Q ss_pred EEEEcCCChhh-H-HHHH-HHHHHHHHHcCCC
Q 011527 195 MDIIGVPAVTA-E-AELI-SSIITFFKRIGIT 223 (484)
Q Consensus 195 ~eiig~~~~~a-d-aEvi-~l~~~~l~~lgl~ 223 (484)
+++|+.++... + .+++ ..+..+++.|||+
T Consensus 376 ~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 376 IVWIGTKEEVLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999654332 2 3568 7888888999995
No 34
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.71 E-value=2.9e-17 Score=161.75 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 011527 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (484)
Q Consensus 89 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPl 168 (484)
.++.+++.++++|..+||+||.||.|++.++|.. .|+.-.++||++.++-++.++|||++++++++.+..+....++|+
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 3578999999999999999999999999998875 454322256654433335689999999999987766544467899
Q ss_pred eEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 011527 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (484)
Q Consensus 169 k~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~ 230 (484)
|+|++|+|||+|.++.+|.+||+|++++++|.++....+|++.++.+++++||++ +|.+.
T Consensus 151 rlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~--~~~~~ 210 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR--EFELV 210 (288)
T ss_dssp EEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC--CCEEE
T ss_pred EEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCC--CcEEe
Confidence 9999999999999888999999999999999877777899999999999999986 45543
No 35
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=167.45 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=127.9
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeC--------CCCeEee
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------GNRRVAL 145 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~--------~G~~l~L 145 (484)
.+|++.|+|.++++++.|.+.+++.+.++||++|.||.|.+.++|.. +|++ +.++||++.|. .++.++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~-sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQE-VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhh-cCCcccCcccceEeecCCccccccccCcceeE
Confidence 47999999999999999999999999999999999999999999986 7775 67899999765 3678999
Q ss_pred CCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCCh-hhH---HHHHHHH
Q 011527 146 RPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV-TAE---AELISSI 213 (484)
Q Consensus 146 RpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~-~ad---aEvi~l~ 213 (484)
+|..+++++.++..... +.+||+|+|++++|||+|... .| |.|||+|.++.+|+.+.. .++ .+++.++
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 99999999988766433 578999999999999999743 33 899999999999998753 233 4588999
Q ss_pred HHHHHHcCCCCCceEEEe
Q 011527 214 ITFFKRIGITASDVGFRI 231 (484)
Q Consensus 214 ~~~l~~lgl~~~~~~i~i 231 (484)
.++|+.|||+ |.+..
T Consensus 349 e~il~~LGLp---yrvv~ 363 (522)
T 3vbb_A 349 EEFYQSLGIP---YHIVN 363 (522)
T ss_dssp HHHHHHTTCC---EEEEE
T ss_pred HHHHHHcCCc---eEEEE
Confidence 9999999995 65544
No 36
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.68 E-value=1.1e-16 Score=167.80 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=130.6
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--ccc-ceEEEEeCCCCeEeeCCCChH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRD-QLYCFEDRGNRRVALRPELTP 151 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~-~~~~~~D~~G~~l~LRpD~T~ 151 (484)
...|++.|+|.++++++.|++.+++.+.++||++|.||.|.+.++|.. +|++ +.+ +||++.|.+++.++|+|..++
T Consensus 207 ~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~ 285 (501)
T 1wle_A 207 SGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEG-CGMTPNAKPSQIYNIDPSRFEDLNLAGTAEV 285 (501)
T ss_dssp TCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HTCCSSSSSCSSCBBCTTTSSSCEECSSHHH
T ss_pred ccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHh-hcCCCccCccccEEEecCCCCeEEECCcCcH
Confidence 357899999999999999999999999999999999999999999976 6765 455 999997776789999999999
Q ss_pred HHHHHHHHcCC-CCCCCeeEEEecCeeeeCcC----CCC--CccceEEeEEEEEcCCC-hhhH---HHHHHHHHHHHHHc
Q 011527 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM----TRG--RRREHYQWNMDIIGVPA-VTAE---AELISSIITFFKRI 220 (484)
Q Consensus 152 ~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~----~~g--r~rEf~Q~g~eiig~~~-~~ad---aEvi~l~~~~l~~l 220 (484)
+++.++..... +.+||+|+|++|+|||+|.. ..| |.|||+|.++++|+.+. ..++ .+++..+.++|+.|
T Consensus 286 ~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~L 365 (501)
T 1wle_A 286 GLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTEL 365 (501)
T ss_dssp HHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999887544 56899999999999999954 344 88999999999999885 3333 35889999999999
Q ss_pred CCCCCceEEE
Q 011527 221 GITASDVGFR 230 (484)
Q Consensus 221 gl~~~~~~i~ 230 (484)
||+ |.+.
T Consensus 366 gLp---yrvv 372 (501)
T 1wle_A 366 GLH---FRVL 372 (501)
T ss_dssp TCC---EEEE
T ss_pred CCc---EEEE
Confidence 995 6653
No 37
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.68 E-value=2.4e-16 Score=155.75 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=98.0
Q ss_pred ChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccH-HHhhhh-hccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHc
Q 011527 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRK-AGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQK 160 (484)
Q Consensus 83 lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~-~l~~~~-~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~ 160 (484)
.....++|.+|.+.+++.|.++||.||+||+|++. +++.+. .|+. .++|.+. -.|+.+.||.......-+.++.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~-~~~~~~~L~~Spe~~~~~l~~~- 86 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVE-IYGVKMRLTHSMILHKQLAIAM- 86 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEE-ETTEEEEECSCSHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEE-cCCCCEEeccChHHHHHHHhhc-
Confidence 45678999999999999999999999999999998 777665 4443 5677753 3466788885444444443331
Q ss_pred CCCCCCCeeEEEecCeeeeCcCCC--CCcc-ceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcC
Q 011527 161 GKSVSLPLKWFAVGQCWRYERMTR--GRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (484)
Q Consensus 161 ~~~~~lPlk~yyig~vfR~e~~~~--gr~r-Ef~Q~g~eiig~~~~~adaEvi~l~~~~l~~lg 221 (484)
-+.|+||+|+|||+|+||. +|.+ ||+|+++|+.+.+ ..|++.++.++++.+.
T Consensus 87 -----g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~----~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 87 -----GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK----MEDIMRLIERLVYGLF 141 (294)
T ss_dssp -----TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHHH
T ss_pred -----CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC----HHHHHHHHHHHHHHHH
Confidence 1779999999999999774 6887 9999999999975 5577777777777663
No 38
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.65 E-value=5.6e-16 Score=164.11 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=127.5
Q ss_pred CCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHHH
Q 011527 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (484)
Q Consensus 76 p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~i 153 (484)
..|++.|+|.++++.+.|.+.+++.+.++||++|.||.|.+.++|.. +|++ +.++||++.| +.++|+|..++++
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~-sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~ 339 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 339 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGCCEETT---TTEEECSSTHHHH
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHh-cCCcccChhhceEecC---CCEEEccCCcHHH
Confidence 67999999999999999999999999999999999999999999986 7875 6789999854 6899999999999
Q ss_pred HHHHHHcCC-CCCCCeeEEEecCeeeeCcC-----CCC--CccceEEeEEEEEcCCC-hhhHH---HHHHHHHHHHHHcC
Q 011527 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERM-----TRG--RRREHYQWNMDIIGVPA-VTAEA---ELISSIITFFKRIG 221 (484)
Q Consensus 154 aR~~~~~~~-~~~lPlk~yyig~vfR~e~~-----~~g--r~rEf~Q~g~eiig~~~-~~ada---Evi~l~~~~l~~lg 221 (484)
+-++..... +.+||+|+|++|+|||+|.. ..| |.|||+|.++.+|+.++ ..++. +++..+.++|+.||
T Consensus 340 ~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 340 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp HHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 988766433 56899999999999999962 334 89999999999999876 23333 47899999999999
Q ss_pred CCCCceEEEe
Q 011527 222 ITASDVGFRI 231 (484)
Q Consensus 222 l~~~~~~i~i 231 (484)
|+ |.+..
T Consensus 420 Lp---yrvv~ 426 (536)
T 3err_A 420 LP---YRLVE 426 (536)
T ss_dssp CC---EEEEE
T ss_pred Cc---EEEEE
Confidence 95 65543
No 39
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.65 E-value=8.6e-16 Score=159.80 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=129.0
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
...|++.|+|.++++.+.|.+.+++.+.++||++|.||.|.+.++|.. +|++ +.++||++.|. ++.++|+|..+.+
T Consensus 196 sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~~~~f~e~mf~v~~~-~~~~~L~PTaE~~ 273 (484)
T 3lss_A 196 AGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGE-VAQLSQFDEELYQVSGD-GDKKYLIATSEMP 273 (484)
T ss_dssp HCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHHHTCCEEESS-SSCEEECSSTHHH
T ss_pred CCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHh-cCCcccccccceEeecC-CcceEEeccCcHH
Confidence 357889999999999999999999999999999999999999999986 7775 67899999764 7889999999999
Q ss_pred HHHHHHHcCC-CCCCCeeEEEecCeeeeCc-C-C---CC--CccceEEeEEEEEcCCCh-hhH---HHHHHHHHHHHHHc
Q 011527 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYER-M-T---RG--RRREHYQWNMDIIGVPAV-TAE---AELISSIITFFKRI 220 (484)
Q Consensus 153 iaR~~~~~~~-~~~lPlk~yyig~vfR~e~-~-~---~g--r~rEf~Q~g~eiig~~~~-~ad---aEvi~l~~~~l~~l 220 (484)
++-++..... +.+||+|+|++++|||+|. + + .| |.|||+|.++.+|+.++. .++ .+++..+.++|+.|
T Consensus 274 l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~L 353 (484)
T 3lss_A 274 IAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSL 353 (484)
T ss_dssp HHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 9988766433 6789999999999999996 2 1 34 899999999999998754 222 34889999999999
Q ss_pred CCCCCceEEEe
Q 011527 221 GITASDVGFRI 231 (484)
Q Consensus 221 gl~~~~~~i~i 231 (484)
||+ |.+..
T Consensus 354 GLp---yrvv~ 361 (484)
T 3lss_A 354 GLP---YRVVN 361 (484)
T ss_dssp TCC---EEEEE
T ss_pred CCc---EEEEE
Confidence 995 66543
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.61 E-value=3.8e-15 Score=154.79 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=128.2
Q ss_pred CCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCCCCeEeeCCCChHH
Q 011527 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (484)
Q Consensus 75 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~G~~l~LRpD~T~~ 152 (484)
...|++.|+|.++++++.|.+.+++.+.++||++|.||.|.+.++|.. +|++ +.++||++.|. ++.++|+|-+..|
T Consensus 173 sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~-sG~l~~f~eemf~v~~~-~~~~~LipTaE~p 250 (485)
T 3qne_A 173 VGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAK-TAQLSQFDEELYKVIDG-EDEKYLIATSEQP 250 (485)
T ss_dssp HCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHH-HSCHHHHTTTCCEEEET-TEEEEECSSTHHH
T ss_pred ccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCCccccccceEEEeCC-CCeEEEeccccHH
Confidence 356999999999999999999999999999999999999999999976 6765 67899999875 6789999999999
Q ss_pred HHHHHHHcC-C--CCCCCeeEEEecCeeeeCcCC-----CC--CccceEEeEEEEEcCCChhhH---HHHHHHHHHHHHH
Q 011527 153 LARLVIQKG-K--SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVTAE---AELISSIITFFKR 219 (484)
Q Consensus 153 iaR~~~~~~-~--~~~lPlk~yyig~vfR~e~~~-----~g--r~rEf~Q~g~eiig~~~~~ad---aEvi~l~~~~l~~ 219 (484)
++.++.... . +.+||+|+|++++|||+|... .| |.|||+|.++.+|+.++. ++ .+++.++.++|+.
T Consensus 251 l~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~-s~~e~e~ml~~~e~il~~ 329 (485)
T 3qne_A 251 ISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEK-SWEEFDRMIGCSEEFYQS 329 (485)
T ss_dssp HHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHH-HHHHHHHHHHHHHHHHHH
Confidence 998877643 2 467999999999999999633 34 899999999999987643 33 3588999999999
Q ss_pred cCCCCCceEEEe
Q 011527 220 IGITASDVGFRI 231 (484)
Q Consensus 220 lgl~~~~~~i~i 231 (484)
|||+ |.+..
T Consensus 330 LgLp---yrvv~ 338 (485)
T 3qne_A 330 LGLP---YRVVG 338 (485)
T ss_dssp TTCC---EEEEE
T ss_pred CCCc---EEEEE
Confidence 9995 65544
No 41
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.54 E-value=7.2e-14 Score=137.99 Aligned_cols=131 Identities=24% Similarity=0.369 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcc----ccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE----EIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~----~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
++++.+.+++.|..+||.||.||.|+..+.+.. .+. .+.+++|.| ++..+|||++++++++.++.+.....
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~----~~~~~LR~slsp~L~~~l~~n~~~~~ 153 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRV----DKNFCLRPMLTPNLYNYLRKLDRALP 153 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEE----TTTEEECSCSHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheee----CCCeeEcccChHHHHHHHHHhhccCC
Confidence 788999999999999999999999999887654 221 234567776 36799999999999999988654456
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~ 230 (484)
.|.|+|++|+|||+|..+.+|.+||+|++++++|.+. ...|+..++.++|+.+|++ +.+.
T Consensus 154 ~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~--~f~elkg~le~ll~~lGl~---~~~~ 213 (290)
T 3qtc_A 154 DPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC--TRENLESIITDFLNHLGID---FKIV 213 (290)
T ss_dssp SSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTC--CHHHHHHHHHHHHHHHTCC---CEEE
T ss_pred CCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCCh--HHHHHHHHHHHHHHHcCCC---cEEe
Confidence 7999999999999998778899999999999999764 4668899999999999983 5543
No 42
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.40 E-value=4.6e-13 Score=114.60 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=82.8
Q ss_pred CCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCC-
Q 011527 396 NHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSS- 472 (484)
Q Consensus 396 ~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~- 472 (484)
..|.||.|+|++++..++|.+++++|++.|++|+++.. +++++++++.|...++||+++||++|.++++|+|+.+..
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~ 85 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCCC
Confidence 46889999999999999999999999999999999996 889999999999999999999999999999999999987
Q ss_pred -CceeeeccCcC
Q 011527 473 -GEQYEIKLDEL 483 (484)
Q Consensus 473 -~~~~~v~~~el 483 (484)
++...++++|+
T Consensus 86 ~~e~~~m~lde~ 97 (130)
T 1v95_A 86 PQEHRNMPQADA 97 (130)
T ss_dssp CCEEEEEEHHHH
T ss_pred CCccCccCHHHH
Confidence 78888998875
No 43
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.29 E-value=2.3e-11 Score=120.50 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=124.0
Q ss_pred CccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc--cccceEEEEeCC---------------
Q 011527 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG--------------- 139 (484)
Q Consensus 77 ~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~--~~~~~~~~~D~~--------------- 139 (484)
+|++-+-+...++++.|++.+++ ...+||++|.||.+.+.++|.+ +|++ +.++||....-.
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~-SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEK-SGYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHH-TTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHh-cCCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 67888889999999999999999 8899999999999999999976 7775 678999864322
Q ss_pred ---------CCeEeeCCCChHHHHHHHHHc-CCCCCCCeeEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCCh-hhHH
Q 011527 140 ---------NRRVALRPELTPSLARLVIQK-GKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAV-TAEA 207 (484)
Q Consensus 140 ---------G~~l~LRpD~T~~iaR~~~~~-~~~~~lPlk~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~-~ada 207 (484)
+..++|.|..++|+.-++... ... ..|+|+..+|+|||+|.. +.-|.+||+|..+.+|+.++. .++.
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~-~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~ 210 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP-KGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFR 210 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC-TTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCccc-ccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHH
Confidence 347999999999999998864 333 459999999999999974 234999999999999997543 2333
Q ss_pred -HHHHHHHHHHHHcCCCCCceEEEeC
Q 011527 208 -ELISSIITFFKRIGITASDVGFRIS 232 (484)
Q Consensus 208 -Evi~l~~~~l~~lgl~~~~~~i~i~ 232 (484)
+++..+.++++.|||+ |.+.+.
T Consensus 211 e~l~~~ae~il~~LgLp---yrv~~~ 233 (346)
T 3mf2_A 211 ERWMVRAQAIARDLGLT---FRVDYA 233 (346)
T ss_dssp HHHHHHHHHHHHHTTCC---CEEEEC
T ss_pred HHHHHHHHHHHHHCCCC---EEEEEc
Confidence 4889999999999995 776653
No 44
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.18 E-value=7.4e-11 Score=122.32 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LR--pD~T~~iaR~~~~~~~~ 163 (484)
-.+++..|.+.+++.|..+||.+|+||+|+... ++ -..++|.+ |..|+.+.|| |+++... ++..
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~------~e-~~~~~f~~-~~~~~~~~Lr~Spel~~~~---~~~g--- 199 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTGA------VE-GGATLFKL-KYFDKYAYLSQSAQLYLEA---AIFG--- 199 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC------SS-CGGGCCEE-EETTEEEEECSCSHHHHHH---HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec------CC-CCceeEEE-eecCCcEEeccChHHHHHH---HhcC---
Confidence 457899999999999999999999999999651 12 13567877 5678899999 7776443 2221
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCcc-ceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~r-Ef~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
+.|+|++|+|||+|+++.+|.+ ||+|+++|..+.+ ..|++.++.++++.+
T Consensus 200 ---~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 200 ---LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD----LWDIMKVEEELVSYM 250 (434)
T ss_dssp ---HSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ---ccceEEEecceecCCCCCcccccEEEEeeEEEcCCC----HHHHHHHHHHHHHHH
Confidence 6799999999999998888887 9999999999975 456676666666554
No 45
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.10 E-value=5e-10 Score=115.89 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LR--pD~T~~iaR~~~~~~~~ 163 (484)
-.+++..|.+.+++.|..+||.+|+||+|+... ++ -..++|.+ +..|+.+.|| |+++ .-| ++..
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~------~e-~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g--- 198 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIASA------TE-GGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV--- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------SS-TTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH---
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC------CC-CCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC---
Confidence 357899999999999999999999999999751 11 13567877 5678899999 6655 444 4432
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCcc-ceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~r-Ef~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
+-|+|++|+|||+|+++.+|.+ ||+|+++|..+.+ ..|++.++.++++.+
T Consensus 199 ---~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 199 ---VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD----YNDVMQLLEKILHNI 249 (429)
T ss_dssp ---HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ---cCceEEEcccccccCCccccccceeeEeeeeecCCC----HHHHHHHHHHHHHHH
Confidence 5799999999999998888887 9999999999975 345566555555543
No 46
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.10 E-value=1.3e-10 Score=120.06 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LR--pD~T~~iaR~~~~~~~~ 163 (484)
-.++|.+|.+.+++.|..+||.||+||+|+.... +. ..++|.+ |..|+.+.|| |+++. +.++..
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~-----e~--~~~~f~~-~~~g~~~~L~~Spel~~---~~l~~g--- 189 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA-----EG--GSGLFGV-DYFEKRAYLAQSPQLYK---QIMVGV--- 189 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH---HHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCC-----CC--CceeEEE-eeCCCcEEeeeCHHHHH---HHHhhC---
Confidence 4588999999999999999999999999997521 11 3467776 5667889999 77663 334421
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCcc-ceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~r-Ef~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
+-|+|++|+|||+|+++.+|.+ ||+|+++|..+.++ ..|++.++.++++.+
T Consensus 190 ---~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d---~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 190 ---FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD---EEDLMRLEEALLAEM 241 (422)
T ss_dssp ---HSEEEEEEEC-------------CCEEEEEEEESCSS---HHHHHHHHHHHHHHH
T ss_pred ---CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCC---HHHHHHHHHHHHHHH
Confidence 3599999999999999888887 99999999999843 345666665555544
No 47
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.01 E-value=2e-09 Score=113.14 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LR--pD~T~~iaR~~~~~~~~ 163 (484)
-.++|..|.+.+++.|..+||.||+||+|+... .+. ..++|.+ +..|+.+.|| |++-. -++++..
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~~--ga~~f~~-~~~~~~~~L~~Spql~~--k~l~~~g--- 243 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SEG--GSSVFEV-TYFKGKAYLAQSPQFNK--QQLIVAD--- 243 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SSS--SSCCCEE-EETTEEEEECSCTHHHH--HHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CCC--Cccccee-ccCCccEEcccChHHHH--HHHHhcC---
Confidence 357899999999999999999999999999853 121 3467877 3578899999 77633 3333321
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCcc-ceEEeEEEE-EcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDI-IGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~r-Ef~Q~g~ei-ig~~ 201 (484)
+-|+||||+|||+|+++.+|.+ ||+|+++|+ |+.+
T Consensus 244 ---~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~ 280 (487)
T 1eov_A 244 ---FERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH 280 (487)
T ss_dssp ---CCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC
T ss_pred ---CCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcC
Confidence 5699999999999999888887 999999997 7754
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.86 E-value=2e-08 Score=105.57 Aligned_cols=103 Identities=16% Similarity=0.260 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|..|.+.+++.|..+||.||+||+|.+.. .|. ..++|.+. |..|+.+.||----...=|.++..
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~Ga--~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~G---- 241 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GGA--AARPFITHHNALDMTLYMRIAIELHLKRLIVGG---- 241 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CCC--cccceEecccCCCceeEEecCHHHHHHHHhhcc----
Confidence 357889999999999999999999999998641 232 34677765 667889999943222222333321
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
.-|+|+||+|||+|..+..|..||||+++|..+.+
T Consensus 242 --~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d 276 (493)
T 3a74_A 242 --LEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD 276 (493)
T ss_dssp --CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC
T ss_pred --cCceEEECccccCCCCCcccCCceeEEEEEecCCC
Confidence 56999999999999988889999999999999975
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.69 E-value=1.4e-07 Score=99.18 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
-.++|.+|.+.+++.|..+||.||+||+|.+.. .|. ..++|.+. +.-|..+.||--.-...=|+++..
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~Ga--~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G---- 250 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVGG---- 250 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CSS--CCCCCEEEETTTTEEEEECSCSHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CCC--cccceEeccCCCCceEEeccCHHHHHHHHhhcC----
Confidence 347888999999999999999999999998641 222 23567654 456888999954333333444432
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
.-|+|+||+|||+|..+..|..||||+++|.-+.+
T Consensus 251 --~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d 285 (504)
T 1e1o_A 251 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 285 (504)
T ss_dssp --CCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCC
T ss_pred --CCcEEEEcccccCCCCCccccCceeeeeeeecCCC
Confidence 45999999999999888889999999999999875
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.67 E-value=1.6e-07 Score=94.25 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=85.0
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE--e---CCCCeEeeCCCChHHHHHHHHH
Q 011527 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--D---RGNRRVALRPELTPSLARLVIQ 159 (484)
Q Consensus 85 ~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~--D---~~G~~l~LRpD~T~~iaR~~~~ 159 (484)
.-.++|..|.+.+++.|...||.||+||+|.... +.....+.|++. + ..+..+.|+----...-|.++.
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~------~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~ 107 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT------VTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVA 107 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------CCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC------CCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHc
Confidence 4678999999999999999999999999998643 221233456542 1 1125566875544444455554
Q ss_pred cCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 160 ~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
. --|+|+||+|||+|.....|..||||+++|.-+.+ ..+++.++.++++.+
T Consensus 108 g------~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 108 G------CGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYD----MYRLMNEVDDLLQQV 158 (345)
T ss_dssp T------CCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred C------CCcEEEEEcceeCCCCcccccchhheeeeeeeCCC----HHHHHHHHHHHHHHH
Confidence 3 23899999999999887789999999999999875 223555555555543
No 51
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.56 E-value=5.3e-07 Score=94.20 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecC-CccccHH-Hhhhh-h--cccc--ccceEEEEeC----------------------
Q 011527 88 RLRNWLFHNFQEVSRLFGFEEVDF-PVLESEA-LFIRK-A--GEEI--RDQLYCFEDR---------------------- 138 (484)
Q Consensus 88 ~~~~~i~~~i~~~f~~~Gy~eI~t-P~le~~~-l~~~~-~--g~~~--~~~~~~~~D~---------------------- 138 (484)
.-...+.+.++++|...||.++.+ |.+++.. .|..- . .|.. ..+.|.+.++
T Consensus 225 HPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~ 304 (508)
T 3l4g_A 225 HPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGG 304 (508)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccc
Confidence 345678899999999999999875 8888753 22210 1 1110 1223545432
Q ss_pred -------------CCCeEeeCCCChHHHHHHHHHcCC-CCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChh
Q 011527 139 -------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (484)
Q Consensus 139 -------------~G~~l~LRpD~T~~iaR~~~~~~~-~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~ 204 (484)
.++..+||+.+|+..+|.+..+.. ....|+|+|++|+|||++.....+..+|+|++.-++|.+-
T Consensus 305 ~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v-- 382 (508)
T 3l4g_A 305 YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGL-- 382 (508)
T ss_dssp TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESC--
T ss_pred cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCC--
Confidence 125799999999999999987543 2346999999999999998778899999999998887542
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q 011527 205 AEAELISSIITFFKRIGIT 223 (484)
Q Consensus 205 adaEvi~l~~~~l~~lgl~ 223 (484)
.-.++..++..+++++|+.
T Consensus 383 ~f~dLKg~Le~~l~~lG~~ 401 (508)
T 3l4g_A 383 TLGHLMGVLREFFTKLGIT 401 (508)
T ss_dssp CHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHcCCc
Confidence 3355778888888888864
No 52
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.46 E-value=2e-06 Score=90.30 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=65.2
Q ss_pred eEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 142 ~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
..+||+.+++++...+..+......|+|+|++|+|||++.+ +.++++||+|+++.+.|.+... .++..++..+++.|
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf--~dLKgilE~LL~~L 257 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSV--DDGKAVAEALLRQF 257 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCH--HHHHHHHHHHHGGG
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCH--HHHHHHHHHHHHHc
Confidence 58999999998887777665544679999999999998766 6678899999999999974333 45778888888888
Q ss_pred CCC
Q 011527 221 GIT 223 (484)
Q Consensus 221 gl~ 223 (484)
|+.
T Consensus 258 Gi~ 260 (534)
T 2du3_A 258 GFE 260 (534)
T ss_dssp TCC
T ss_pred CCC
Confidence 874
No 53
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.41 E-value=1.6e-06 Score=89.80 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.++|..|...+++.|...||.||+||+|..... . | ..++|.+. --|+.+.|+-..-...=+.++..
T Consensus 137 ~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~--e--g---~~~~f~~~-~~~~~~yL~~Spql~~q~l~~~g------ 202 (438)
T 3nem_A 137 FKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT--E--G---GTELFPMK-YFEEDAFLAQSPQLYKQIMMASG------ 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--S--C---SSSCCEEE-ETTEEEEECSCSHHHHHHGGGTT------
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC--C--C---CccceeEe-eCCccEEEecChHHHHHHHHhcC------
Confidence 478899999999999999999999999987532 1 2 23466653 35778899865444443443322
Q ss_pred CeeEEEecCeeeeCcCCCCCc-cceEEeEEEEEcCCC
Q 011527 167 PLKWFAVGQCWRYERMTRGRR-REHYQWNMDIIGVPA 202 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~gr~-rEf~Q~g~eiig~~~ 202 (484)
.-|+|+||+|||+|.....|. .||+|+++|.-+.++
T Consensus 203 ~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~ 239 (438)
T 3nem_A 203 LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIED 239 (438)
T ss_dssp CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSS
T ss_pred CCceEEEcceEECCCCCCcccccceeeeeeeeccCcc
Confidence 459999999999998776554 699999999998773
No 54
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.37 E-value=4.5e-06 Score=83.76 Aligned_cols=127 Identities=20% Similarity=0.315 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHH-hhhh-hccc--c--ccceEEEEeCCC-----------CeEeeCCCChHH
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRK-AGEE--I--RDQLYCFEDRGN-----------RRVALRPELTPS 152 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l-~~~~-~g~~--~--~~~~~~~~D~~G-----------~~l~LRpD~T~~ 152 (484)
...+.+.++++|...||.|+.+|.+++... |..- .... . ..+.|.+.++.. ...+||+-+++.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 556778899999999999999999988532 2221 1111 0 134566665432 678999999999
Q ss_pred HHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc-CC
Q 011527 153 LARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI-GI 222 (484)
Q Consensus 153 iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l-gl 222 (484)
.+|.+..+ ..|+|+|++|+|||.+.....+..||+|+..-++|.+-.. .++..++..+++.+ |.
T Consensus 183 llr~l~~~----~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f--~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 183 QVRYMVAH----TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAM--AHLKGAIYELAQALFGP 247 (350)
T ss_dssp HHHHHHHC----CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCH--HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhc----CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCH--HHHHHHHHHHHHhhcCC
Confidence 99999874 3499999999999976533347789999999999974322 33456666667766 64
No 55
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.35 E-value=2.3e-06 Score=88.67 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 011527 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (484)
Q Consensus 86 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LR--pD~T~~iaR~~~~~~~~ 163 (484)
-.++|..|.+.+++.|..+||.||+||+|..... .| ..++|.. +--|+.+.|+ |++-.. +.++.
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG---~~~~F~~-~~~g~~~~L~~SpqLylq--~l~~g---- 196 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EG---GSTLFNL-DYFGEQSFLTQSSQLYLE--TCIPT---- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SC---TTSCCEE-EETTEEEEECSCSHHHHH--HHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CC---chhceee-ccCCcccccCCChHHHHH--Hhhhc----
Confidence 4578999999999999999999999999976532 12 1235654 4457888888 454333 33321
Q ss_pred CCCCeeEEEecCeeeeCcCCCCCcc-ceEEeEEEEEcCC
Q 011527 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVP 201 (484)
Q Consensus 164 ~~lPlk~yyig~vfR~e~~~~gr~r-Ef~Q~g~eiig~~ 201 (484)
.-|+|+||+|||+|.....|.. ||||+++|.-+.+
T Consensus 197 ---~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d 232 (435)
T 2xgt_A 197 ---LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT 232 (435)
T ss_dssp ---HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCC
T ss_pred ---cCceEEEecceecCCCCccccccceeEEEEEEecCC
Confidence 2489999999999987665555 9999999999875
No 56
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=6.6e-06 Score=86.34 Aligned_cols=131 Identities=19% Similarity=0.266 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeC----------------------------
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDR---------------------------- 138 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~---------------------------- 138 (484)
...+.+.++++|...||+++.+|.++.........|+. +.++.|.+.+.
T Consensus 59 l~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~~~ 138 (549)
T 2du7_A 59 VMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKKE 138 (549)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccchhh
Confidence 45677899999999999999999998754332323342 23336666532
Q ss_pred ----------CC----------------------------------------CeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 011527 139 ----------GN----------------------------------------RRVALRPELTPSLARLVIQKGKSVSLPL 168 (484)
Q Consensus 139 ----------~G----------------------------------------~~l~LRpD~T~~iaR~~~~~~~~~~lPl 168 (484)
.+ +..+||+.+++++...+..+....+.|+
T Consensus 139 ~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~r~~~pv 218 (549)
T 2du7_A 139 RLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLPL 218 (549)
T ss_dssp SCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSCSSE
T ss_pred hhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHhcCCCCe
Confidence 11 3578999999988877776644446799
Q ss_pred eEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCC
Q 011527 169 KWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (484)
Q Consensus 169 k~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl 222 (484)
|+|++|+|||.+.. ...+++||+|++.-+.|.+. .-.++..++..+++.||+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~v--dF~DLKG~Le~ll~~LGi 271 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDV--SVDDGKVVAEGLLAQFGF 271 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTC--CHHHHHHHHHHHHGGGTC
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCC--CHHHHHHHHHHHHHHcCC
Confidence 99999999997653 34578999999999999742 234566777777887776
No 57
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.17 E-value=1.4e-05 Score=78.55 Aligned_cols=146 Identities=15% Similarity=0.184 Sum_probs=95.4
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHH-hhhh-hccc-c---ccceEEEEeCCC
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRK-AGEE-I---RDQLYCFEDRGN 140 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l-~~~~-~g~~-~---~~~~~~~~D~~G 140 (484)
+..+++..+|....... ...-..++.+.+++.|...||.|+.+|.+++... |... .... . ..+.+.+.
T Consensus 34 gyd~i~~tlp~~~~~~g--~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---- 107 (294)
T 2rhq_A 34 AEETIDVTLPSRQISIG--SKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---- 107 (294)
T ss_dssp TTTCCCTTSCCCCCCCC--CCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----
T ss_pred CcccCCccCCCcccCCC--CCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----
Confidence 44556666664322111 1223456778889999999999999999988532 2221 1111 0 01134442
Q ss_pred CeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 141 RRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 141 ~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
...+||+-+++.+.|.++.+. ...|.|+|++|+|||.+.....+..||+|++.-+.|.+-.. .++..++..+++.+
T Consensus 108 e~~vLRtsl~p~ll~~l~~N~--~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df--~dlKg~le~ll~~l 183 (294)
T 2rhq_A 108 DEILMRTHTSPVQARTMEKRN--GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKM--SDLKGTLELVAKKL 183 (294)
T ss_dssp SSEEECSSSHHHHHHHHHHTT--TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCH--HHHHHHHHHHHHHH
T ss_pred CcceeeccCHHHHHHHHHhcC--CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCH--HHHHHHHHHHHHHH
Confidence 567999999999999999875 35699999999999975422335579999999999963222 23445556666666
Q ss_pred -CC
Q 011527 221 -GI 222 (484)
Q Consensus 221 -gl 222 (484)
|+
T Consensus 184 ~g~ 186 (294)
T 2rhq_A 184 FGA 186 (294)
T ss_dssp HCT
T ss_pred hCC
Confidence 65
No 58
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.12 E-value=2.1e-05 Score=84.29 Aligned_cols=101 Identities=16% Similarity=0.253 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe--CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D--~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
.++|..|...+|+.|...||.||+||+|..... -|. .. |..-- ..|..++|+----...=+.++..
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~----eGA---r~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G---- 205 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP----EGA---RD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSG---- 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS---CC-CEEECSSSTTCEEECCSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC---cc-ceecccccCCceEeCccCHHHHHHHHHhcC----
Confidence 478889999999999999999999999985421 121 12 43322 24677778854333223333322
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|....-|.-||||+++|.-..+
T Consensus 206 --~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d 240 (585)
T 1c0a_A 206 --FDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT 240 (585)
T ss_dssp --CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred --CCceEEEeceeecCCCCCCcCcccceeeeeecCCC
Confidence 24999999999999877767669999999999876
No 59
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.11 E-value=6.1e-05 Score=79.75 Aligned_cols=131 Identities=20% Similarity=0.274 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCC---------------------------
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~--------------------------- 139 (484)
...+.+.++++|...||+++.+|.++.........|+. ..++.|.+.+..
T Consensus 67 l~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (648)
T 2odr_B 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (648)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 45677889999999999999999998754322223332 122355554311
Q ss_pred --------------------------------------------------CCeEeeCCCChHHHHHHHHHcCCCCCCCee
Q 011527 140 --------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (484)
Q Consensus 140 --------------------------------------------------G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk 169 (484)
.+..+||+.+++++...+..+....+.|+|
T Consensus 147 l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~~pvR 226 (648)
T 2odr_B 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (648)
T ss_dssp -------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCCCCeE
Confidence 135789999999777777666444467999
Q ss_pred EEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCC
Q 011527 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (484)
Q Consensus 170 ~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl 222 (484)
+|++|+|||.+.. ...++.||+|++.=+.|.+... .++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF--~DLKGvLE~LL~~LGi 278 (648)
T 2odr_B 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (648)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred EEEEeeEEecCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 9999999997543 3335789999999999974322 3455667777777776
No 60
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.11 E-value=1.9e-05 Score=84.42 Aligned_cols=101 Identities=19% Similarity=0.298 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEe--CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D--~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
.++|.+|...+++.|...||.||+||+|..... .|. .. |..-- ..|..++|+----...=+.++..
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~----eGA---r~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G---- 211 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP----EGA---RD-FLVPYRHEPGLFYALPQSPQLFKQMLMVAG---- 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS---CC-CEEECTTSTTEEEECCSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC---CC-ccccccccCCceeECccCHHHHHHHHHHhc----
Confidence 478889999999999999999999999985421 121 12 43322 23566778754333223333322
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|....-|.-||||+++|.-..+
T Consensus 212 --~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d 246 (580)
T 1l0w_A 212 --LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 246 (580)
T ss_dssp --CSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred --cCCeEEEeceeeCCCCCCCcCCCccceeeeecCCC
Confidence 24999999999999877767669999999999876
No 61
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.10 E-value=6.3e-05 Score=79.72 Aligned_cols=131 Identities=20% Similarity=0.274 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCC---------------------------
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~--------------------------- 139 (484)
...+.+.++++|...||+++.+|.++.........|+. ..++.|.+.+..
T Consensus 67 l~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (665)
T 2odr_A 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (665)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 45677889999999999999999998754322223332 122255554311
Q ss_pred --------------------------------------------------CCeEeeCCCChHHHHHHHHHcCCCCCCCee
Q 011527 140 --------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (484)
Q Consensus 140 --------------------------------------------------G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk 169 (484)
.+..+||+.+++++...+..+....+.|+|
T Consensus 147 l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~R~~~pvR 226 (665)
T 2odr_A 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (665)
T ss_dssp -------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhcCCCCeE
Confidence 135789999999777777666444467999
Q ss_pred EEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCC
Q 011527 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (484)
Q Consensus 170 ~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl 222 (484)
+|++|+|||.+.. ...++.||+|++.=+.|.+... .++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF--~DLKGvLE~LL~~LGi 278 (665)
T 2odr_A 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (665)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred EEEEeeEEecCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 9999999997543 3335789999999999974322 3455667777777776
No 62
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.10 E-value=1.5e-05 Score=82.87 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.++|..|...+++.|...||.||+||+|.....- |. .++|.+ |--|+.+.|+--.....=++++.
T Consensus 156 lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~e----Gg---~~~f~~-~~~~~~~~L~~SpqL~lq~l~~g------- 220 (456)
T 3m4p_A 156 LQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE----GG---STLFKL-QYFNEPAYLTQSSQLYLESVIAS------- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------------CCCCEE-EETTEEEEECSCCHHHHHTTHHH-------
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCC----Cc---cccccc-cccCCCcccccCHHHHHHHHHhc-------
Confidence 4789999999999999999999999999764321 21 234544 44577888887655555444442
Q ss_pred CeeEEEecCeeeeCcCCCC-CccceEEeEEEEEcCC
Q 011527 167 PLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~g-r~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|..... +.-||+|+++|.-..+
T Consensus 221 ~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d 256 (456)
T 3m4p_A 221 LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFIS 256 (456)
T ss_dssp HSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCC
T ss_pred cCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCC
Confidence 2489999999999976544 4569999999999875
No 63
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.10 E-value=6.5e-05 Score=79.75 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=59.4
Q ss_pred eEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 142 ~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
..+||+.+++++...+..+....+.|+|+|++|+|||.+.. ...++.||+|++.=+.|.+... .++..++..+++.|
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF--~DLKGvLE~LL~~L 276 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQF 276 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHc
Confidence 57899999997777776664444679999999999997543 3335789999999999974322 34556677777777
Q ss_pred CC
Q 011527 221 GI 222 (484)
Q Consensus 221 gl 222 (484)
|+
T Consensus 277 Gi 278 (685)
T 2odr_D 277 GF 278 (685)
T ss_dssp TC
T ss_pred CC
Confidence 76
No 64
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.08 E-value=7.1e-05 Score=79.66 Aligned_cols=131 Identities=20% Similarity=0.273 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccc---cccceEEEEeCC---------------------------
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG--------------------------- 139 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~---~~~~~~~~~D~~--------------------------- 139 (484)
...+.+.++++|...||+++.+|.++.........|+. ..++.|.+.+..
T Consensus 67 l~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~ 146 (701)
T 2odr_C 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKES 146 (701)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC--------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhh
Confidence 45677889999999999999999998754322223332 123355554311
Q ss_pred ----------C----------------------------------------CeEeeCCCChHHHHHHHHHcCCCCCCCee
Q 011527 140 ----------N----------------------------------------RRVALRPELTPSLARLVIQKGKSVSLPLK 169 (484)
Q Consensus 140 ----------G----------------------------------------~~l~LRpD~T~~iaR~~~~~~~~~~lPlk 169 (484)
+ +..+||+.+++++...+..+....+.|+|
T Consensus 147 l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~pvR 226 (701)
T 2odr_C 147 LQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226 (701)
T ss_dssp -------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTTSCSCEE
T ss_pred hhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCCeE
Confidence 1 25689999999777777766444467999
Q ss_pred EEEecCeeeeCcC-CCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCC
Q 011527 170 WFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (484)
Q Consensus 170 ~yyig~vfR~e~~-~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl 222 (484)
+|++|+|||.+.. ...++.||+|++.=+.|.+... .++..++..+++.||+
T Consensus 227 LFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF--~DLKGvLE~LL~~LGi 278 (701)
T 2odr_C 227 LFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (701)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred EEEEeeEEccCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 9999999997543 3335789999999999974322 3455667777777776
No 65
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.06 E-value=3.7e-05 Score=81.19 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEE-eCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~-D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
.++|..|...+++.|...||.||.||+|.+.. .|. ..+.|... +.-|..+.||----...=|.++..
T Consensus 176 ~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gGa--~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g----- 243 (521)
T 3bju_A 176 FIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GGA--VAKPFITYHNELDMNLYMRIAPELYHKMLVVGG----- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SCCCCEEEETTTTEEEEECSCSHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CCc--cccceeeecccCCcceEeeCCHHHHHHHHHhcC-----
Confidence 47888899999999999999999999998631 221 23455432 334788899865444444555532
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|....-|.-||||+++|.-..+
T Consensus 244 -~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 244 -IDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD 278 (521)
T ss_dssp -CCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred -cCceEEEEcceeCCCCCCccchhhhhhhhhhhcCC
Confidence 24999999999999766668899999999999875
No 66
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.04 E-value=4.6e-05 Score=80.31 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEE-EeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~-~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~ 165 (484)
.++|..|...+++.|...||.||+||+|.... .|. ..+.|.. .+.-+..+.||----...=|.++..
T Consensus 204 fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G----- 271 (529)
T 4ex5_A 204 FRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGA--AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG----- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCC--cccccccccccCCcceecccCHHHHHHHHHhcC-----
Confidence 47888999999999999999999999998531 222 1234432 2334677888865444444555532
Q ss_pred CCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCC
Q 011527 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (484)
Q Consensus 166 lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~ 201 (484)
--|+|+||+|||+|....-|.-||+|+++|.-..+
T Consensus 272 -~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d 306 (529)
T 4ex5_A 272 -FERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTD 306 (529)
T ss_dssp -CSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred -CCcEEEeehheecCCCCCCcccHhHhhhhhhhcCC
Confidence 34999999999999877668899999999998865
No 67
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=98.00 E-value=3.2e-05 Score=81.68 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 011527 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~l 166 (484)
.++|..+...+++.|...||.||.||+|..... . . ..+.|.+ +--|..+.|+--.-...-+.++..
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--e-g----ga~~F~v-~~~~~~~yL~~Spql~~k~ll~~g------ 309 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS--E-G----GSNIFEV-KYFDRKAYLAQSPQLYKQMAIMGD------ 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHHHHHHHHTTT------
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC--C-C----CcceeEE-ecCCCceEeccCHHHHHHHHHhcC------
Confidence 478899999999999999999999999987642 1 1 1234543 223556677765444434544432
Q ss_pred CeeEEEecCeeeeCcCCCC-CccceEEeEEEE-EcC
Q 011527 167 PLKWFAVGQCWRYERMTRG-RRREHYQWNMDI-IGV 200 (484)
Q Consensus 167 Plk~yyig~vfR~e~~~~g-r~rEf~Q~g~ei-ig~ 200 (484)
--|+|+||+|||+|..... +.-||+|+++|. |+.
T Consensus 310 ~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~ 345 (548)
T 3i7f_A 310 FRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE 345 (548)
T ss_dssp CCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSS
T ss_pred cCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhc
Confidence 3599999999999976433 457999999996 553
No 68
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.93 E-value=7.8e-05 Score=79.80 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHH-HcCCeeecCCccccHHHhhhhhccccccceEEEEe-CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 011527 87 MRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKSV 164 (484)
Q Consensus 87 ~~~~~~i~~~i~~~f~-~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D-~~G~~l~LRpD~T~~iaR~~~~~~~~~ 164 (484)
.++|..+...+++.|. ..||.||+||+|..... .|. .-|.+-. ..|..+.|+----...-+.++..
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~----~GA----~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g---- 215 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTP----GGA----KEFLVPSREPGKFYSLPQSPQQFKQLLMVGG---- 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCC----SSS----CCCEEECSSTTCEEECCSSTTHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCC----CCC----cCceeccccCCcccccccCHHHHHHHHHhcc----
Confidence 4678899999999996 79999999999975321 121 1243322 24778888754322222333322
Q ss_pred CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 165 ~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
--|+|+||+|||+|.....|.-||+|+++|.-..+- .+++.++.+++..+
T Consensus 216 --~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~----~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 216 --LDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQ----TGIQSLIEGLLQYS 265 (617)
T ss_dssp --CSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCH----HHHHHHHHHHHHHH
T ss_pred --cCcEEEEEhheecccCCCCcCcceecceeeecCCCH----HHHHHHHHHHHHHH
Confidence 249999999999998777789999999999988652 23455555555543
No 69
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=97.77 E-value=0.00024 Score=66.33 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~lPl 168 (484)
..++++.+++.+...||+|+.|-.|...+.+.. .+..-.++.+++.++ +...-+||+.+.+++.+.++.|......++
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 346778899999999999999999988765432 221112355777665 456779999999999999998765444569
Q ss_pred eEEEecCeeeeCcCC------CCCccceEEeEEEEEcCC--------ChhhHH-HHHHHHHHHHHHcCCC
Q 011527 169 KWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP--------AVTAEA-ELISSIITFFKRIGIT 223 (484)
Q Consensus 169 k~yyig~vfR~e~~~------~gr~rEf~Q~g~eiig~~--------~~~ada-Evi~l~~~~l~~lgl~ 223 (484)
|+|++|+||+.+... .+..+|....++=+.|.. ....|. ++-.++..++..+|+.
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999975311 123578888888888841 123453 3557777788888875
No 70
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=97.69 E-value=0.00032 Score=65.49 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 011527 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~lPl 168 (484)
.+++++.+++.+...||+|+.|-.|...+.+.. .+..-.+...++.++ +...-+||+.+.+++.+.++.|......++
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 456788999999999999999999988765432 221112345666665 566789999999999999988765434469
Q ss_pred eEEEecCeeeeCcCC------CCCccceEEeEEEEEcCCC--------hhhHH-HHHHHHHHHHHHcCCC
Q 011527 169 KWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVPA--------VTAEA-ELISSIITFFKRIGIT 223 (484)
Q Consensus 169 k~yyig~vfR~e~~~------~gr~rEf~Q~g~eiig~~~--------~~ada-Evi~l~~~~l~~lgl~ 223 (484)
|+|++|+||+.+... .+..+|..++++=+.|... ...|. ++-.++..+++.+|+.
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~ 154 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIE 154 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999965311 1235788888888888521 22343 4557777778888874
No 71
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.61 E-value=0.00039 Score=74.75 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=100.0
Q ss_pred ccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhcccc-ccceEEEEeC-CCCeEe
Q 011527 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI-RDQLYCFEDR-GNRRVA 144 (484)
Q Consensus 67 ~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~-~~~~~~~~D~-~G~~l~ 144 (484)
+..++...+|... ... ...-.+++.+.+++.+...||+|+.|+.|...+......+... ..+.+++.++ +...-+
T Consensus 373 GYdnIp~tlP~~~-~~g--~~~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~sv 449 (589)
T 3l4g_B 373 GYNNIQMTLPKTY-TIA--NQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQV 449 (589)
T ss_dssp CGGGSCCCCCCCC-CCC--CCCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSE
T ss_pred CcccCCCcCCCcc-ccC--CCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhH
Confidence 5566666666542 111 1112345578889999999999999999988763212222110 1345666555 345579
Q ss_pred eCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCC
Q 011527 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (484)
Q Consensus 145 LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~ 223 (484)
||+.+.+++.+.++.|... +.|+|+|++|+|||.+....-..+|+.|.++-+.|...... ++-.++..+++.+|++
T Consensus 450 mRtsLlpgLL~~l~~N~~~-~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~--~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 450 ARTTLLPGLLKTIAANRKM-PLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFE--IIHGLLDRIMQLLDVP 525 (589)
T ss_dssp ECSCSHHHHHHHHHHTTTS-CSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHH--HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcC-CCceEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHH--HHHHHHHHHHHHcCCC
Confidence 9999999999999887553 46999999999999764322346789999988888542212 2335555677778875
No 72
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.32 E-value=0.00072 Score=75.07 Aligned_cols=150 Identities=11% Similarity=0.065 Sum_probs=100.3
Q ss_pred ccccccccCCC-ccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccc-eEEEEeC-CCCeE
Q 011527 67 DLQKIDVNPPK-GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR-GNRRV 143 (484)
Q Consensus 67 ~~~~~~~~~p~-G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~-~~~~~D~-~G~~l 143 (484)
+..++...+|. +... +....-.+++.+.+++.+...||+|+.|..|...+.+ ...+. ..+ .+.+.++ +...-
T Consensus 473 GydnIp~tlP~~~~~~--~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~~v~L~NPis~e~s 547 (795)
T 2rhq_B 473 GYDEIPSSLPVFGEVT--SGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFAL--QERPTISLLMPMSEAHA 547 (795)
T ss_dssp CTTTSCCCCCCCSSCC--CCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTCS--SCCCCEECSSCSCTTSS
T ss_pred CcccCCccCCCccccC--CCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhCC--CCCceEEEcCCCchhhh
Confidence 55666666664 3211 1122234556788899999999999998888776544 32321 234 4667655 34566
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCC--------hhhHH-HHHHHHH
Q 011527 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAEA-ELISSII 214 (484)
Q Consensus 144 ~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~--------~~ada-Evi~l~~ 214 (484)
+||+.+.+++.+.+..|......|+|+|++|+|||.+.....+ .|+.|.++=+.|... ...|. ++-.++.
T Consensus 548 vLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le 626 (795)
T 2rhq_B 548 TLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVD 626 (795)
T ss_dssp EECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHH
Confidence 8999999999999988754445699999999999954221123 899999998888531 11232 3556666
Q ss_pred HHHHHcCC
Q 011527 215 TFFKRIGI 222 (484)
Q Consensus 215 ~~l~~lgl 222 (484)
.+++.||+
T Consensus 627 ~ll~~lG~ 634 (795)
T 2rhq_B 627 RVAEKLNL 634 (795)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 67777776
No 73
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.22 E-value=0.00043 Score=68.58 Aligned_cols=138 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred cccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHH-Hhhhh---hcccc--ccceEEEEeCCCCeE
Q 011527 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK---AGEEI--RDQLYCFEDRGNRRV 143 (484)
Q Consensus 70 ~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~-l~~~~---~g~~~--~~~~~~~~D~~G~~l 143 (484)
.++..+|.+-..... ..-...+.+.++++|...||+++.+|.++... .|..- ..+.. ..+.|.+ +...
T Consensus 91 ~id~TLP~~~~~~G~--~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i----~e~~ 164 (327)
T 3pco_A 91 TIDVSLPGRRIENGG--LHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF----DTTR 164 (327)
T ss_dssp CCCTTSCCCCCCCCC--CCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS----SSSC
T ss_pred CCCCcCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe----CCCc
Confidence 456666655332221 22345577889999999999999999987532 12110 01100 0123433 1457
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHc
Q 011527 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (484)
Q Consensus 144 ~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 220 (484)
+||..+++..+|.+..+ ..|+|+|++|+|||.+ ....+..+|+|...-++|.+-..+ ++-.++..+++.|
T Consensus 165 vLRThtsp~~lr~l~~~----~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~--dLKg~Le~~l~~l 234 (327)
T 3pco_A 165 LLRTQTSGVQIRTMKAQ----QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFT--NLKGTLHDFLRNF 234 (327)
T ss_dssp EECSCTHHHHHHHHTTC----CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHH--HHHHHHHHHHHHH
T ss_pred eecccCCHHHHHHHHhC----CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHH--HHHHHHHHHHHHH
Confidence 99999999999998653 3499999999999987 344567789998766776432222 3344444555554
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=97.00 E-value=0.0025 Score=70.44 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=98.0
Q ss_pred ccccccccCCCccc-cCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEe
Q 011527 67 DLQKIDVNPPKGTR-DFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVA 144 (484)
Q Consensus 67 ~~~~~~~~~p~G~~-d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~ 144 (484)
+..++...+|.+.. ...+ ...-.+++.+.+++.+...||+|+.|-.|...+.+ ...+. .++.+.+.++ +...-+
T Consensus 468 GydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~v~L~NPis~d~sv 543 (785)
T 1b7y_B 468 GYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRL--DPPRLLLLNPLAPEKAA 543 (785)
T ss_dssp CGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTC--CCCSCEESSCSSTTSSE
T ss_pred CcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCC--CCCeEEEcCCCchhhhh
Confidence 55666666675510 0011 22234566788899999999999888777766544 22321 2344667655 445668
Q ss_pred eCCCChHHHHHHHHHcCCCC-CCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCC-------hhhH-HHHHHHHHH
Q 011527 145 LRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-------VTAE-AELISSIIT 215 (484)
Q Consensus 145 LRpD~T~~iaR~~~~~~~~~-~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~-------~~ad-aEvi~l~~~ 215 (484)
||+.+.+++.+.+..|.... ..|+|+|++|+||| + .|+.|.++=+.|... ...| .++-..+..
T Consensus 544 LRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ 615 (785)
T 1b7y_B 544 LRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEA 615 (785)
T ss_dssp ECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHH
Confidence 99999999999998874433 46999999999999 2 899999999999641 1133 345567777
Q ss_pred HHHHcCC
Q 011527 216 FFKRIGI 222 (484)
Q Consensus 216 ~l~~lgl 222 (484)
+++.+|+
T Consensus 616 ll~~lgi 622 (785)
T 1b7y_B 616 LFARLGL 622 (785)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 7777886
No 75
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=95.68 E-value=0.076 Score=54.27 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHc--------CCeeecC-CccccH-HHhhhhhc----ccc--ccceEEEEeCCCCeEeeCCCChHHH
Q 011527 90 RNWLFHNFQEVSRLF--------GFEEVDF-PVLESE-ALFIRKAG----EEI--RDQLYCFEDRGNRRVALRPELTPSL 153 (484)
Q Consensus 90 ~~~i~~~i~~~f~~~--------Gy~eI~t-P~le~~-~l~~~~~g----~~~--~~~~~~~~D~~G~~l~LRpD~T~~i 153 (484)
...+.+.++++|... ||+++.+ |.++.. ..|.. .+ +.. ..+.|.+ ....+||.-.++..
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~-L~~p~dHpaR~~~Dtfyi----~~~~vLRThts~~~ 124 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDS-LLIPADHPSRKKGDNYYL----NRTHMLRAHTSAHQ 124 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGG-GTCCTTCGGGCGGGSCBS----SSSEEECSSGGGGH
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHH-hCCCCCCCcccccceEEe----cCCeEEcCCCcHHH
Confidence 445566666666665 9999998 667664 33322 11 100 1234444 23589999999999
Q ss_pred HHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEe-EEEEE
Q 011527 154 ARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQW-NMDII 198 (484)
Q Consensus 154 aR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~-g~eii 198 (484)
+|.+..+ .| |++.+|.|||.+.....++-+|+|. |+-+|
T Consensus 125 ~~~l~~~-----~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 125 WDLLHAG-----LD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp HHHHHTT-----CS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred HHHHHHC-----CC-CEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 9998753 25 9999999999987667788889875 45554
No 76
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=95.38 E-value=0.06 Score=59.58 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEE
Q 011527 93 LFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWF 171 (484)
Q Consensus 93 i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~-~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~y 171 (484)
..+.+++.+...||+|+.|-.|...+.+.. .+. .++..++.++ +.+.=+||+.+.+++...++.|......++|+|
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lF 570 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIF 570 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 345677788889999999999988765433 331 2344556555 456678999999999999988766555689999
Q ss_pred EecCeeeeCcCCCCCccceEEeEEEEEcCCC--------hhhHHH-HHHHHHHHHHHcCC
Q 011527 172 AVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAEAE-LISSIITFFKRIGI 222 (484)
Q Consensus 172 yig~vfR~e~~~~gr~rEf~Q~g~eiig~~~--------~~adaE-vi~l~~~~l~~lgl 222 (484)
++|+||..+......++|....++=+.|... ...|.. +-.++..++..+|+
T Consensus 571 EiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 571 ESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999998754322346788888888888531 223433 45666667777776
No 77
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=66.04 E-value=3.9 Score=41.71 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=24.4
Q ss_pred ccccHhHhhcCCCCCceecccchHHHHHHHHHHc
Q 011527 356 GRYDQLLSTFGGDDIPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 356 GRYD~L~~~f~~~~~pavGfsigierl~~~l~e~ 389 (484)
..|+.+++.+.-...|..|||+|+|||+.++...
T Consensus 378 ~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~ 411 (429)
T 1wyd_A 378 ESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGI 411 (429)
T ss_dssp GGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCC
Confidence 4566677655211258999999999999998753
No 78
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=54.76 E-value=37 Score=32.10 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=41.6
Q ss_pred CccEEEEEcCc------------chHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 398 QVENIVCALDH------------NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 398 ~~~v~Vi~~~~------------~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
|-+|.++|-.. ........+.++|+++||+|.+..++. .++++.|.+.|++++-+-
T Consensus 116 P~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd--~~qI~aA~~~GAd~IELh 183 (278)
T 3gk0_A 116 PHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPD--EAQIRAAHETGAPVIELH 183 (278)
T ss_dssp CSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHHTCSEEEEC
T ss_pred CCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEe
Confidence 45666766542 134666778899999999999887543 468999999999987553
No 79
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=47.42 E-value=34 Score=32.07 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 412 GAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 412 ~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
.....+.++|+++||+|.+..++. .++++.|.+.|++++-+-
T Consensus 111 ~~L~~~i~~L~~~GIrVSLFIDpd--~~qi~aA~~~GAd~IELh 152 (260)
T 3o6c_A 111 AKLKQSIEKLQNANIEVSLFINPS--LEDIEKSKILKAQFIELH 152 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCCCEEEEe
Confidence 344567889999999999887543 468999999999987653
No 80
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=46.17 E-value=72 Score=29.53 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEc
Q 011527 410 LQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 410 ~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig 456 (484)
.......+.++|+++||+|.+..++. .++++.|.+.|++++-+--
T Consensus 112 ~~~~l~~~i~~L~~~GIrVSLFIDpd--~~qi~aA~~~GA~~IELhT 156 (243)
T 1m5w_A 112 QRDKMRDACKRLADAGIQVSLFIDAD--EEQIKAAAEVGAPFIEIHT 156 (243)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTCSEEEEEC
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEec
Confidence 35677788999999999999887643 4689999999999976653
No 81
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=42.37 E-value=12 Score=38.08 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=23.2
Q ss_pred cccHhHhhcCCCCCceecccchHHHHHHHHHH
Q 011527 357 RYDQLLSTFGGDDIPACGFGFGDAVILELLKE 388 (484)
Q Consensus 357 RYD~L~~~f~~~~~pavGfsigierl~~~l~e 388 (484)
.|+.+++.+.-...|..|||+|+|||+.++..
T Consensus 384 ~~~~yl~al~yG~PP~~G~glGiDRLvmll~g 415 (434)
T 1x54_A 384 DYEWYLDLRRYGSVPHSGFGLGVERLVAWVLK 415 (434)
T ss_dssp GGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCceEEEEcHHHHHHHHcC
Confidence 46666665531135899999999999998864
No 82
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=38.30 E-value=2e+02 Score=25.09 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=41.6
Q ss_pred CccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHHH---cCCCEEEE
Q 011527 398 QVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAAR---INAQRLIL 454 (484)
Q Consensus 398 ~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~~---~gi~~~ii 454 (484)
...|.|+--+......+.+.+..|...|+..|+-.- .+.+++..++++. .|++-+|.
T Consensus 12 ~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa 73 (173)
T 4grd_A 12 APLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIA 73 (173)
T ss_dssp SCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEE
T ss_pred CCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEE
Confidence 346888877777788889999999999998877544 4567776666554 68874433
No 83
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=36.34 E-value=2.2e+02 Score=24.91 Aligned_cols=57 Identities=12% Similarity=-0.044 Sum_probs=41.1
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHH---HHHcCCCEEEEE
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKR---AARINAQRLILV 455 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~---a~~~gi~~~iii 455 (484)
..|.|+.-+....+.+.+.+..|...|+..|+-.- .+.+++..++ |+..|++-+|.+
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 69 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAG 69 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 36888877777788899999999999998877544 3455555554 667899944433
No 84
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=35.58 E-value=2.3e+02 Score=24.83 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=42.2
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHH---HcCCCEEEEE
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAA---RINAQRLILV 455 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~---~~gi~~~iii 455 (484)
..|.|+.-+....+.+.+.+..|...|+..|+-.- .+.+++..++++ ..|++-+|.+
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 74 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 36788877777788899999999999999887644 456777777765 4788844433
No 85
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=34.08 E-value=13 Score=36.64 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=21.9
Q ss_pred cc-HhHhhc--CCCCCceecccchHHHHHHHHHHc
Q 011527 358 YD-QLLSTF--GGDDIPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 358 YD-~L~~~f--~~~~~pavGfsigierl~~~l~e~ 389 (484)
|| .+++.+ | ..|..|||+|+|||+.++...
T Consensus 299 ~d~~yl~al~yG--~PPhgG~glGiDRLvmll~g~ 331 (345)
T 3a5y_A 299 IDQNLIEALKVG--MPDCSGVALGVDRLVMLALGA 331 (345)
T ss_dssp CCHHHHHHHHHC--CCSEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CCCCcEEEEcHHHHHHHHcCC
Confidence 54 355533 5 358999999999999998754
No 86
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=30.03 E-value=2.8e+02 Score=24.16 Aligned_cols=55 Identities=9% Similarity=-0.021 Sum_probs=41.2
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHH---HcCCCEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAA---RINAQRLIL 454 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~---~~gi~~~ii 454 (484)
.|.|+.-+....+.+.+.+..|...|+..|+-.- .+.+++..++++ ..|++-+|.
T Consensus 13 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa 72 (170)
T 1xmp_A 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72 (170)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEE
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 6778877777788899999999999999887654 356777777765 467884333
No 87
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=29.41 E-value=2.3e+02 Score=24.62 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=40.4
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHH---HHHcCCCEEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKR---AARINAQRLILV 455 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~---a~~~gi~~~iii 455 (484)
.|.|+.-+....+.+.+.+..|...|+..|+-.- .+++++..++ ++..|++-+|.+
T Consensus 8 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 68 (169)
T 3trh_A 8 FVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAA 68 (169)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5777777777788899999999999999887644 3556666665 455788844433
No 88
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=29.00 E-value=1.2e+02 Score=25.23 Aligned_cols=55 Identities=11% Similarity=-0.033 Sum_probs=37.8
Q ss_pred CccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527 398 QVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT 458 (484)
Q Consensus 398 ~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~ 458 (484)
++|++++.... +...++++.+-+.|++..+........+..+.|++.|+. ++|++
T Consensus 69 ~vDlvii~vp~---~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~---~igpn 123 (138)
T 1y81_A 69 DVDVIVFVVPP---KVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE---YSFGR 123 (138)
T ss_dssp TCCEEEECSCH---HHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE---EECSC
T ss_pred CCCEEEEEeCH---HHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE---EEcCC
Confidence 46888888774 345566667777899876554444456677788888977 45643
No 89
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=28.55 E-value=1.6e+02 Score=25.61 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEe-CCC-------CHHHHHHHHHHcCCCEEEEEc
Q 011527 411 QGAASMVATTLRGKGQSVDLVL-ESK-------PLKWVFKRAARINAQRLILVG 456 (484)
Q Consensus 411 ~~~a~~la~~Lr~~Gi~v~~~~-~~~-------~~~~~~~~a~~~gi~~~iiig 456 (484)
++-+.++.+.|++.|+.|++.+ ++. ++.+..+.|+..++..+|-|=
T Consensus 32 l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH 85 (180)
T 3qay_A 32 KSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELH 85 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEee
Confidence 5678889999999999975443 211 388889999999999887663
No 90
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=28.36 E-value=27 Score=35.57 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=16.5
Q ss_pred CceecccchHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKE 388 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e 388 (484)
.|..||++|+||++.++..
T Consensus 401 pP~~G~GlGidRLvm~l~g 419 (438)
T 3nem_A 401 PPHGGFGLGAERLIKQMLD 419 (438)
T ss_dssp CCEEEEEEEHHHHHHHHTT
T ss_pred CCceEEEEhHHHHHHHHhC
Confidence 5788999999999998854
No 91
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=27.73 E-value=25 Score=35.55 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.2
Q ss_pred CceecccchHHHHHHHHHHc
Q 011527 370 IPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e~ 389 (484)
.|..|||+|+|||+.++...
T Consensus 385 PPhgG~glGiDRLvm~l~g~ 404 (422)
T 1n9w_A 385 PPHGGFAIGAERLTQKLLGL 404 (422)
T ss_dssp CSEEEEEEEHHHHHHHHTTC
T ss_pred CCceEEEEcHHHHHHHHhCC
Confidence 58999999999999998643
No 92
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=27.45 E-value=25 Score=37.32 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=22.2
Q ss_pred ccHhHhhcCCCCCceecccchHHHHHHHHHHc
Q 011527 358 YDQLLSTFGGDDIPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 358 YD~L~~~f~~~~~pavGfsigierl~~~l~e~ 389 (484)
|..++..+.-...|..|||+|+|||+.++...
T Consensus 514 ~~~yL~al~yG~PPhgG~glGlDRLvmlltg~ 545 (585)
T 1c0a_A 514 FGFLLDALKYGTPPHAGLAFGLDRLTMLLTGT 545 (585)
T ss_dssp HHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCceeEEEcHHHHHHHHcCC
Confidence 33455544311358899999999999998754
No 93
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=27.08 E-value=1.5e+02 Score=26.80 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=47.9
Q ss_pred eeecCccccHhHhhcCCCCCceecccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEE
Q 011527 351 AICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDL 430 (484)
Q Consensus 351 ~i~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~ 430 (484)
.|.+||.++.+.. ..+ +=++.|+=+..+.+.|+.| |++|--++ ...++ ..+.+.+.|..+..
T Consensus 5 ~I~~gG~~~~~~~-----~~~---~~i~~DgGa~~l~~~g~~P------d~ivGDfD-Si~~~---~~~~~~~~~~~i~~ 66 (218)
T 3ihk_A 5 ALFSGGDLTYFTR-----DFD---YFVGIDKGSSFLLKNQLPL------DLAIGDFD-SVSAE---EFKQIKAKAKKLVM 66 (218)
T ss_dssp EEECSSCCSCCCC-----CCS---EEEEETHHHHHHHHTTCCC------SEEEECCT-TSCHH---HHHHHHTTCSSEEE
T ss_pred EEEECCCCccCcc-----cCC---EEEEEcHHHHHHHHcCCCC------CEEEeCcc-cCCHH---HHHHHHhcCCeEEE
Confidence 5788898875421 112 1223344444455566544 44333222 22222 22445567776644
Q ss_pred EeCC---CCHHHHHHHHHHc-CCCEEEEEcC
Q 011527 431 VLES---KPLKWVFKRAARI-NAQRLILVGT 457 (484)
Q Consensus 431 ~~~~---~~~~~~~~~a~~~-gi~~~iiig~ 457 (484)
...+ ...++++++|.+. |+..++++|.
T Consensus 67 ~~~eKD~TD~e~Al~~a~~~~~~~~I~i~Ga 97 (218)
T 3ihk_A 67 APAEKNDTDTELALKTIFDCFGRVEIIVFGA 97 (218)
T ss_dssp CCSSCSSCHHHHHHHHHHHHTSSCEEEEESC
T ss_pred CCCCCCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence 2222 2488888888877 7888888875
No 94
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=26.92 E-value=1.1e+02 Score=25.39 Aligned_cols=50 Identities=12% Similarity=-0.028 Sum_probs=34.8
Q ss_pred CccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCC
Q 011527 398 QVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQ 450 (484)
Q Consensus 398 ~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~ 450 (484)
++|++|+....+ .+.++++++-+.|+++.+...+..-.+..+.|++.|+.
T Consensus 77 ~vDlvvi~vp~~---~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 77 KIEVVDLFVKPK---LTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLI 126 (144)
T ss_dssp CCSEEEECSCHH---HHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCE
T ss_pred CCCEEEEEeCHH---HHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCE
Confidence 468888887653 45666777778888876554433456677788888876
No 95
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=26.66 E-value=26 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred ccHhHhhcCCCCCceecccchHHHHHHHHHHc
Q 011527 358 YDQLLSTFGGDDIPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 358 YD~L~~~f~~~~~pavGfsigierl~~~l~e~ 389 (484)
|..+++.+.-...|..|||+|+|||+.++...
T Consensus 508 ~~~~L~al~yG~PPhgG~glGlDRLvMll~g~ 539 (580)
T 1l0w_A 508 FGFFLEALEYGAPPHGGIAWGLDRLLALMTGS 539 (580)
T ss_dssp THHHHHHTTBTCCCEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCCceEEEcHHHHHHHHcCC
Confidence 43455544311358999999999999998754
No 96
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=26.53 E-value=29 Score=35.80 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=21.7
Q ss_pred ccHhHhhcCCCCCceecccchHHHHHHHHHHc
Q 011527 358 YDQLLSTFGGDDIPACGFGFGDAVILELLKEK 389 (484)
Q Consensus 358 YD~L~~~f~~~~~pavGfsigierl~~~l~e~ 389 (484)
|..++..+.-...|..|||+|+|||+.++...
T Consensus 438 ~~~yl~al~yG~PPhgG~glGiDRLvmll~g~ 469 (487)
T 1eov_A 438 LKDYCDGFSYGCPPHAGGGIGLERVVMFYLDL 469 (487)
T ss_dssp THHHHHHHTTCCCCEEEEEEEHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCC
Confidence 44444443211357899999999999998643
No 97
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=26.10 E-value=31 Score=36.18 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=30.9
Q ss_pred eEEEEecCCCcceeecCcc----ccHhHhhc-----------------CCCCCceecccchHHHHHHHHHH
Q 011527 339 VFECFDRDGKLRAICGGGR----YDQLLSTF-----------------GGDDIPACGFGFGDAVILELLKE 388 (484)
Q Consensus 339 vFe~~~~~g~~~~i~~GGR----YD~L~~~f-----------------~~~~~pavGfsigierl~~~l~e 388 (484)
-|++|.. | ..||+|+- |+.+.++| .....|..||++|+||++.++..
T Consensus 462 rFDL~i~-G--~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg 529 (548)
T 3i7f_A 462 SYDVFVR-G--QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLG 529 (548)
T ss_dssp EEEEEET-T--EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTT
T ss_pred EEEEEEC-C--EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhC
Confidence 5999984 4 45777643 44443332 11135788999999999988854
No 98
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=25.49 E-value=29 Score=25.05 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=21.2
Q ss_pred eeceeEEEEecCCCcceeecCccccHhHh
Q 011527 335 YTGIVFECFDRDGKLRAICGGGRYDQLLS 363 (484)
Q Consensus 335 YtG~vFe~~~~~g~~~~i~~GGRYD~L~~ 363 (484)
|+|+|-.+.. |....+..||-.|+|+.
T Consensus 20 y~G~VQRvsd--gkaaVLFEGGnWDKLVT 46 (66)
T 2jz2_A 20 FEGLVQRVSD--GKAAVLFENGNWDKLVT 46 (66)
T ss_dssp CEEEEEEEET--TEEEEEEESSSCEEEEE
T ss_pred eeEEEEEecC--CcEEEEecCCCceeEEE
Confidence 7888887763 55567889999999863
No 99
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=24.02 E-value=96 Score=25.01 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=37.2
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC-C-CCH-HHHHHHHHHcCCCEEEEEcC
Q 011527 399 VENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE-S-KPL-KWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 399 ~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~-~-~~~-~~~~~~a~~~gi~~~iiig~ 457 (484)
.|+.|+.++. ....+.+.++.|++.|+++.+..- . ..+ .+.+..+ ..+.+.++++-+
T Consensus 14 ~dv~iv~~Gs-~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~-~~~~~~vvvvE~ 73 (118)
T 3ju3_A 14 ADITFVTWGS-QKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNV-LSSANLVIDVES 73 (118)
T ss_dssp CSEEEEEEGG-GHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHH-HTTCSCCCCCCC
T ss_pred CCEEEEEECc-cHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHH-HcCCCEEEEEEC
Confidence 4788888875 456788889999999999887632 1 122 2333333 246677777743
No 100
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=23.82 E-value=1.6e+02 Score=26.67 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=49.6
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCC
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLES-KPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSG 473 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~-~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~ 473 (484)
.++|.. +.+........++.|...=-.+....+. .++++..+.|...++..+++|.++....+.+.+-++-+|
T Consensus 35 KvLITT-Sr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G 108 (217)
T 2cxh_A 35 RILVTT-SRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP 108 (217)
T ss_dssp EEEEEE-SSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred eEEEEc-CCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence 455544 4344455677888887653245555554 479999999999999999999876544455666666555
No 101
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.79 E-value=1.5e+02 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=40.6
Q ss_pred ccEEEEEcCcchH------HHHHHHHHHHHHCCCeEE---EEeCCCCHHHHHHHHHHcCCCEEEEEcC
Q 011527 399 VENIVCALDHNLQ------GAASMVATTLRGKGQSVD---LVLESKPLKWVFKRAARINAQRLILVGT 457 (484)
Q Consensus 399 ~~v~Vi~~~~~~~------~~a~~la~~Lr~~Gi~v~---~~~~~~~~~~~~~~a~~~gi~~~iiig~ 457 (484)
..|.|+..+++.. .....++..|++.|+.+. +..+++.+.+.++.|-..+++.+|+-|-
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4677777776432 245678899999998763 3323355777888776568998888874
No 102
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=23.77 E-value=3.6e+02 Score=23.36 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=41.5
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHHH---cCCCEEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAAR---INAQRLILV 455 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~~---~gi~~~iii 455 (484)
.|.|+.-+....+.+.+.+..|...|+..|+-.- .+++++.+++++. .|+.-+|.+
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 67 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAG 67 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5777777777788899999999999998877544 4567777777664 577654444
No 103
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=23.72 E-value=35 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=16.9
Q ss_pred CceecccchHHHHHHHHHH
Q 011527 370 IPACGFGFGDAVILELLKE 388 (484)
Q Consensus 370 ~pavGfsigierl~~~l~e 388 (484)
.|..||++|+|||+.++..
T Consensus 474 PP~gG~GlGiDRLvMlltg 492 (521)
T 3bju_A 474 PPTAGWGMGIDRVAMFLTD 492 (521)
T ss_dssp CSEEEEEEEHHHHHHHHTT
T ss_pred CCceeEEEcHHHHHHHHhC
Confidence 5899999999999999865
No 104
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=23.68 E-value=2.2e+02 Score=27.47 Aligned_cols=127 Identities=12% Similarity=0.124 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHH-HHcCCeeecCCccccHHHhhhhhccccc--cceEEE--EeCCCCeEeeCCCChHHHHHHHHHcCC
Q 011527 88 RLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEEIR--DQLYCF--EDRGNRRVALRPELTPSLARLVIQKGK 162 (484)
Q Consensus 88 ~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~~l~~~~~g~~~~--~~~~~~--~D~~G~~l~LRpD~T~~iaR~~~~~~~ 162 (484)
.....|.+.|.+.+ ...|+.+|..|+|-.... ...+... .+...| .+-.|..+-+-.-+. -.=|+...++.
T Consensus 10 ~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~---GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLa-KWKR~aL~~y~ 85 (330)
T 12as_A 10 RQISFVKSHFSRQLEERLGLIEVQAPILSRVGD---GTQDNLSGAEKAVQVKVKALPDAQFEVVHSLA-KWKRQTLGQHD 85 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEECCCCSEEETTS---SCSCCTTTTCCCCEECCSSSTTCCEEECSCCT-THHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcEEecCCEEecCCC---CCCCCCCCceecceEecccCCCceEEEeeeHH-HHHHHHHHhCC
Confidence 34455555555433 488999999999987531 1111111 223333 222244332222211 12244444442
Q ss_pred CCCCCeeEEEecCeeeeCc--CCCCCccceEEeEEEEEcCCCh---hhHHHHHHHHHHHHHH
Q 011527 163 SVSLPLKWFAVGQCWRYER--MTRGRRREHYQWNMDIIGVPAV---TAEAELISSIITFFKR 219 (484)
Q Consensus 163 ~~~lPlk~yyig~vfR~e~--~~~gr~rEf~Q~g~eiig~~~~---~adaEvi~l~~~~l~~ 219 (484)
- ..--.+|..-+..|.+. ...-+.-.+.|+|.|.+..... ..-.+++.-+..+++.
T Consensus 86 f-~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~ 146 (330)
T 12as_A 86 F-SAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKA 146 (330)
T ss_dssp C-CTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 1 22358888888888653 2334788999999999987543 2223444445544443
No 105
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=23.66 E-value=3.8e+02 Score=23.58 Aligned_cols=55 Identities=5% Similarity=-0.104 Sum_probs=41.3
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHH---HcCCCEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAA---RINAQRLIL 454 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~---~~gi~~~ii 454 (484)
.|.|+.-+......+.+.+..|...|+..|+-.- .+.+++..++++ ..|++-+|.
T Consensus 23 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa 82 (182)
T 1u11_A 23 VVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIA 82 (182)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEE
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 6888887777788899999999999999877644 456777777765 467874333
No 106
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=23.21 E-value=3.5e+02 Score=23.18 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=38.1
Q ss_pred EEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHHHcCCC
Q 011527 401 NIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAARINAQ 450 (484)
Q Consensus 401 v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~~~gi~ 450 (484)
|.|+.-+....+.+.+.+..|...|+..|+-.- .+.+++..++++.....
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ 53 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKAD 53 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCS
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCC
Confidence 556666666788888999999999998777644 46788888888765443
No 107
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=22.87 E-value=2e+02 Score=22.77 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=37.2
Q ss_pred ccEEEEEcC--cchHHHHHHHHHHHHHCCCeEEEEeCCC----C-------HHHHHHHHHHcCCCEEEEE
Q 011527 399 VENIVCALD--HNLQGAASMVATTLRGKGQSVDLVLESK----P-------LKWVFKRAARINAQRLILV 455 (484)
Q Consensus 399 ~~v~Vi~~~--~~~~~~a~~la~~Lr~~Gi~v~~~~~~~----~-------~~~~~~~a~~~gi~~~iii 455 (484)
.++.|+|++ ++..++..++.+.|++.|++.++..-+- . +++..+.+.+ |++.++.+
T Consensus 5 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~-g~~RV~t~ 73 (104)
T 2ibo_A 5 IALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEFDELMRILKEALEVAGQ-EADNVFAN 73 (104)
T ss_dssp EEEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHHHHHT-SCSCEEEE
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 467788887 3466778888888999999887654321 1 3444455555 88776543
No 108
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=22.68 E-value=1.1e+02 Score=22.55 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=22.3
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCceEEEeCC
Q 011527 201 PAVTAEAELISSIITFFKRIGITASDVGFRISS 233 (484)
Q Consensus 201 ~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~ 233 (484)
.+.+.-.|++.++.+.+..||.. ++.+++|.
T Consensus 57 endeqakelleliarllqklgyk--dinvrvng 87 (96)
T 2jvf_A 57 ENDEQAKELLELIARLLQKLGYK--DINVRVNG 87 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCS--EEEEEEET
T ss_pred cChHHHHHHHHHHHHHHHHhCCC--ceEEEEcC
Confidence 33344457888888888888876 67777664
No 109
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=22.45 E-value=3.8e+02 Score=23.14 Aligned_cols=56 Identities=9% Similarity=-0.110 Sum_probs=40.9
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHH---HcCCCEEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAA---RINAQRLILV 455 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~---~~gi~~~iii 455 (484)
.|.|+.-+....+.+.+.+..|...|+..|+-.- .+.+++..++++ ..|++-+|.+
T Consensus 5 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 65 (163)
T 3ors_A 5 KVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAG 65 (163)
T ss_dssp CEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5777777777788899999999999999877544 456777766655 4678843333
No 110
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=22.00 E-value=18 Score=24.31 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=22.2
Q ss_pred ccccccccchhhcccCCCCCCcccccccccc
Q 011527 5 HSSLSFYMKPLFLSNSSLFPRKFTVPKEYLL 35 (484)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (484)
|+.+++-+-.+.+..+..-|+||.+|+++..
T Consensus 7 ~~~l~sPf~~Li~aA~~~NP~qF~LP~el~~ 37 (45)
T 2l9s_A 7 QPQLRRPFELLIAAAMERNPTQFQLPNELTC 37 (45)
T ss_dssp CCCCCCHHHHHHHHHHHSSCCCSSCCCSSCS
T ss_pred ccccCCHHHHHHHHHHHhChhhhcCCccccc
Confidence 5555555555566667888999999998743
No 111
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.00 E-value=2.1e+02 Score=24.29 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=33.1
Q ss_pred cEEEEEcCcch-HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEE
Q 011527 400 ENIVCALDHNL-QGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 400 ~v~Vi~~~~~~-~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iii 455 (484)
.|++...+.+. .--+.-++..|+.+|+.|...-.+.+.++..+.+.+.+...+.+-
T Consensus 20 ~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS 76 (161)
T 2yxb_A 20 KVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVS 76 (161)
T ss_dssp EEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEE
Confidence 45555554432 223445666777788877544334567777777777777755443
No 112
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=36 Score=25.36 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred cccccccccCCCccccC
Q 011527 66 DDLQKIDVNPPKGTRDF 82 (484)
Q Consensus 66 ~~~~~~~~~~p~G~~d~ 82 (484)
+.+.++.+++|+||+|-
T Consensus 56 ~~k~kf~LKTPKGT~~~ 72 (73)
T 1x59_A 56 ESKQKFVLKTPKSGPSS 72 (73)
T ss_dssp CCSCCCCCCSTTCCCCC
T ss_pred ccccceeeeCCCCCCCC
Confidence 46788999999999983
No 113
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=21.88 E-value=3.6e+02 Score=26.61 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC----CCCHHHHHHHHHHcCCC
Q 011527 375 FGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE----SKPLKWVFKRAARINAQ 450 (484)
Q Consensus 375 fsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~----~~~~~~~~~~a~~~gi~ 450 (484)
+.+.++++++.+.+.+ ..-+.+.+.++++..+..+++.|.+.|+.+.+.-+ .+-+.. ..|+..|++
T Consensus 39 y~fEi~kti~~I~~~~--------~krVaLQfPdgLl~~a~~Ia~~L~~~~~e~~IlgDttYGACCVDe--~aA~~v~aD 108 (378)
T 3lzd_A 39 HEIPKSEILKELKRIG--------AKRVLIQSPEGLRREAEELAGFLEENNIEVFLHGEINYGACDPAD--REAKLVGCD 108 (378)
T ss_dssp CSCCHHHHHHHHHHTT--------CCEEEEECCGGGHHHHHHHHHHHHTTTCEEEEECSCCCCTTSCCH--HHHHHTTCS
T ss_pred ccccHHHHHHHHHhcC--------CCEEEEECCHHHHHHHHHHHHHHhhcCceEEEEcCCcccCcccCH--HHHhhcCCC
Confidence 4467899999998864 23445677889999999999999998888876633 233443 236778999
Q ss_pred EEEEEcCCccc
Q 011527 451 RLILVGTTEWQ 461 (484)
Q Consensus 451 ~~iiig~~e~~ 461 (484)
.+|-.|..-+.
T Consensus 109 ~lVHyGHsCL~ 119 (378)
T 3lzd_A 109 ALIHLGHSYMK 119 (378)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEcCCCcCC
Confidence 99999987764
No 114
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=21.72 E-value=1.8e+02 Score=25.30 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHC-CCeEEEEeCC---CCHHHHHHHHHHcCCCEEEEE
Q 011527 411 QGAASMVATTLRGK-GQSVDLVLES---KPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 411 ~~~a~~la~~Lr~~-Gi~v~~~~~~---~~~~~~~~~a~~~gi~~~iii 455 (484)
++-|.++.+.|.+. |++|.+.-.+ -++.+..+.|++.++...|-|
T Consensus 31 l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSi 79 (179)
T 1jwq_A 31 LAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSI 79 (179)
T ss_dssp HHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEE
Confidence 56788899999999 9999765332 368999999999999988766
No 115
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=20.89 E-value=4.3e+02 Score=23.22 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=40.7
Q ss_pred cEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC--CCCHHHHHHHHH---HcCCCEEEE
Q 011527 400 ENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE--SKPLKWVFKRAA---RINAQRLIL 454 (484)
Q Consensus 400 ~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~--~~~~~~~~~~a~---~~gi~~~ii 454 (484)
.|.|+.-+....+.+.+.+..|...|+..|+-.- .+.+++..++++ ..|++-+|.
T Consensus 15 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa 74 (183)
T 1o4v_A 15 RVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIA 74 (183)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEE
T ss_pred eEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 6777777777788899999999999999887654 356776666655 467884333
No 116
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.52 E-value=3.3e+02 Score=21.72 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=39.5
Q ss_pred ccEEEEEcCc--chHHHHHHHHHHHHHCCCeEEEEeCCC----C-------HHHHHHHHHHcCCCEEEEE
Q 011527 399 VENIVCALDH--NLQGAASMVATTLRGKGQSVDLVLESK----P-------LKWVFKRAARINAQRLILV 455 (484)
Q Consensus 399 ~~v~Vi~~~~--~~~~~a~~la~~Lr~~Gi~v~~~~~~~----~-------~~~~~~~a~~~gi~~~iii 455 (484)
.++.|+|++. +..++..++.+.|++.|++.++..-.- . +++..+.+...|++.+...
T Consensus 10 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~t~ 79 (109)
T 1yqh_A 10 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITS 79 (109)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 5777888875 367788888999999999887654321 2 3444455566788886543
No 117
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=20.51 E-value=96 Score=26.13 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=39.1
Q ss_pred CCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeC----CCCHHHHHHHHHHcCCCEEEEE
Q 011527 397 HQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLE----SKPLKWVFKRAARINAQRLILV 455 (484)
Q Consensus 397 ~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~----~~~~~~~~~~a~~~gi~~~iii 455 (484)
...||+|..-+++....+..++..|.+.|+++-++.+ +..+...+..|- .++..+|+|
T Consensus 19 ~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai-~~s~~~i~v 80 (154)
T 3h16_A 19 PPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGL-GSSRFGIVV 80 (154)
T ss_dssp CSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHH-TSEEEEEEE
T ss_pred CCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHH-HhCcEEEEE
Confidence 3578888776666334578899999999999977643 345666666653 345555444
No 118
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=20.24 E-value=1.9e+02 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCC-EEEEEcC
Q 011527 437 LKWVFKRAARINAQ-RLILVGT 457 (484)
Q Consensus 437 ~~~~~~~a~~~gi~-~~iiig~ 457 (484)
.++++++|...|.+ .++++|.
T Consensus 80 ~e~Al~~~~~~~~~~~I~i~Ga 101 (222)
T 3mel_A 80 TQLALQEALQRFPQAEMTIIGA 101 (222)
T ss_dssp HHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHHHHHHHhCCCceEEEEcc
Confidence 56666666666665 5666653
Done!