BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011528
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/480 (25%), Positives = 211/480 (43%), Gaps = 64/480 (13%)
Query: 3 AKGDFTVTVSKKEVV--AAVLPLQEHWLPQSNLDLLLPAIDVGVFFCYKKPAAAADNINK 60
A G + V + +V A P + W SN+DL++P + Y+ P +++ +
Sbjct: 2 AMGSMKIEVKESTMVRPAQETPGRNLW--NSNVDLVVPNFHTPSVYFYR-PTGSSNFFD- 57
Query: 61 SFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPELLCNNRGVDFVEAYANVELKDL 120
VLK A++ ALV +Y +AG + ++ G E+ CN GV FVEA ++ + D
Sbjct: 58 -------AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDF 110
Query: 121 NLYNPDDTIEGKLVAKKKKNGV-----LSVQATELKCGGIVVACTFDHRIADAYSTDMFL 175
+ P + + A G+ L +Q T KCGG+ + H AD +S F+
Sbjct: 111 GDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFI 170
Query: 176 VSWAEIAQSKPISVMPSFRRSMLNPRRPLCIDHEFDNM-YVPISTLXXXXXXXHNNPQEA 234
SW+++A+ +++ P R++L R P +F ++ Y P L +PQ A
Sbjct: 171 NSWSDMARGLDVTLPPFIDRTLLRARDP--PQPQFQHIEYQPPPALAV-------SPQTA 221
Query: 235 NCNKL---VSRIYYIKSEQLNELQLLATT-GSNGRRTKLESFSAFLWKMVARSANDGMMI 290
+ + I+ + EQ++ L+ + G+ + E + +W+ ++ G+ +
Sbjct: 222 ASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKAR--GLEV 279
Query: 291 ---TKMGIVVDGRTRLSISSNKGDHXXXXXXKSISCMAMGSYFGNVLSIPFGGQNVKELV 347
TK+ I DGR RL S G YFGNV+ +L
Sbjct: 280 DQGTKLYIATDGRARLRPSLPPG------------------YFGNVIFTATPIAIAGDLE 321
Query: 348 EKPLSWVATQVHNFLENAVTKDHFLGLIDWVEAHKPDPALAKIYCTPSSDGPAFVVSSGQ 407
KP+ + A+++H+ L + D+ +D++E AL + T P ++S
Sbjct: 322 FKPVWYAASKIHDALAR-MDNDYLRSALDYLELQPDLKALVRGAHT--FKXPNLGITSWV 378
Query: 408 RFPVSKVDFGWGKPAFGSYHFPWGGDA--GYVMPMPSPAGNGDWVVYMHLSEKQVDLIET 465
R P+ DFGWG+P F GG A G +PSP +G V + L + + L ++
Sbjct: 379 RLPIHDADFGWGRPIFMGP----GGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 120/464 (25%), Positives = 204/464 (43%), Gaps = 63/464 (13%)
Query: 20 VLPLQE---HWLPQSNLDLLLPAIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMA 76
V P QE L SN+DL++P + Y+ P +++ + VLK A++
Sbjct: 13 VRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYR-PTGSSNFFD--------AKVLKDALS 63
Query: 77 EALVSYYALAGEVVYNDVGEPELLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAK 136
ALV +Y +AG + ++ G E+ CN GV FVEA ++ + D + P + + A
Sbjct: 64 RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAV 123
Query: 137 KKKNGV-----LSVQATELKCGGIVVACTFDHRIADAYSTDMFLVSWAEIAQSKPISVMP 191
G+ L +Q T KCGG+ + H AD +S F+ SW+++A+ +++ P
Sbjct: 124 DYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPP 183
Query: 192 SFRRSMLNPRRPLCIDHEFDNM-YVPISTLXXXXXXXHNNPQEANCNKL---VSRIYYIK 247
R++L R P +F ++ Y P L +PQ A + + I+ +
Sbjct: 184 FIDRTLLRARDP--PQPQFQHIEYQPPPALKV-------SPQTAKSDSVPETAVSIFKLT 234
Query: 248 SEQLNELQLLATTGSNG-RRTKLESFSAFLWKMVARSANDGMMI---TKMGIVVDGRTRL 303
EQ++ L+ + N + E + +W+ ++ G+ + TK+ I DGR RL
Sbjct: 235 REQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKAR--GLEVDQGTKLYIATDGRARL 292
Query: 304 SISSNKGDHXXXXXXKSISCMAMGSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLE 363
S G YFGNV+ +L KP+ + A+++H+ L
Sbjct: 293 RPSLPPG------------------YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALA 334
Query: 364 NAVTKDHFLGLIDWVEAHKPDPALAKIYCTPSSDGPAFVVSSGQRFPVSKVDFGWGKPAF 423
+ D+ +D++E AL + T P ++S R P+ DFGWG+P F
Sbjct: 335 R-MDNDYLRSALDYLELQPDLKALVRGAHTFKC--PNLGITSWVRLPIHDADFGWGRPIF 391
Query: 424 GSYHFPWGGDA--GYVMPMPSPAGNGDWVVYMHLSEKQVDLIET 465
GG A G +PSP +G V + L + + L ++
Sbjct: 392 MGP----GGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/480 (25%), Positives = 209/480 (43%), Gaps = 64/480 (13%)
Query: 3 AKGDFTVTVSKKEVV--AAVLPLQEHWLPQSNLDLLLPAIDVGVFFCYKKPAAAADNINK 60
A G + V + +V A P + W SN+DL++P + Y+ P +++ +
Sbjct: 2 AMGSMKIEVKESTMVRPAQETPGRNLW--NSNVDLVVPNFHTPSVYFYR-PTGSSNFFD- 57
Query: 61 SFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPELLCNNRGVDFVEAYANVELKDL 120
VLK A++ ALV +Y +AG + ++ G E+ CN GV FVEA ++ + D
Sbjct: 58 -------AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDF 110
Query: 121 NLYNPDDTIEGKLVAKKKKNGV-----LSVQATELKCGGIVVACTFDHRIADAYSTDMFL 175
+ P + + A G+ L +Q T K GG+ + H AD +S F+
Sbjct: 111 GDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFI 170
Query: 176 VSWAEIAQSKPISVMPSFRRSMLNPRRPLCIDHEFDNM-YVPISTLXXXXXXXHNNPQEA 234
SW+++A+ +++ P R++L R P +F ++ Y P L +PQ A
Sbjct: 171 NSWSDMARGLDVTLPPFIDRTLLRARDP--PQPQFQHIEYQPPPALAV-------SPQTA 221
Query: 235 NCNKL---VSRIYYIKSEQLNELQLLATTGSNG-RRTKLESFSAFLWKMVARSANDGMMI 290
+ + I+ + EQ++ L+ + N + E + +W+ ++ G+ +
Sbjct: 222 ASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKAR--GLEV 279
Query: 291 ---TKMGIVVDGRTRLSISSNKGDHXXXXXXKSISCMAMGSYFGNVLSIPFGGQNVKELV 347
TK+ I DGR RL S G YFGNV+ +L
Sbjct: 280 DQGTKLYIATDGRARLRPSLPPG------------------YFGNVIFTATPIAIAGDLE 321
Query: 348 EKPLSWVATQVHNFLENAVTKDHFLGLIDWVEAHKPDPALAKIYCTPSSDGPAFVVSSGQ 407
KP+ + A+++H+ L + D+ +D++E AL + T P ++S
Sbjct: 322 FKPVWYAASKIHDALAR-MDNDYLRSALDYLELQPDLKALVRGAHT--FKXPNLGITSWV 378
Query: 408 RFPVSKVDFGWGKPAFGSYHFPWGGDA--GYVMPMPSPAGNGDWVVYMHLSEKQVDLIET 465
R P+ DFGWG+P F GG A G +PSP +G V + L + + L ++
Sbjct: 379 RLPIHDADFGWGRPIFMGP----GGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 44/261 (16%)
Query: 31 SNLDLLLPAIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVV 90
S+LD LL + Y P ++ + LK+++++ L +Y LAG +
Sbjct: 29 SHLDQLLLTCHIPFILFYPNP------LDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRIN 82
Query: 91 YNDVGEPELLCNNRGVDFVEAYAN----------VELKDLNLYNPDDTIEGKLVAKKKKN 140
N + CN+ GV FVEA VEL+ L+ Y P G + + ++
Sbjct: 83 VNSSVD----CNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKI-EVNED 137
Query: 141 GVLSVQATELKCGGIVVACTFDHRIADAYSTDMFLVSWAEIAQSKPISVMPSFRRSMLNP 200
L+V+ + +CGG + H+IAD S FL +W + + V+P+F
Sbjct: 138 VPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFD------ 191
Query: 201 RRPLCIDHEFDNMYVPISTLXXXXXXXHNNPQEANCNKLVSRIYYIKSEQLNELQLLATT 260
L H + P+ +P+ +V + + E++ L+ A++
Sbjct: 192 ---LAARH-----FPPVDNTP--------SPELVPDENVVMKRFVFDKEKIGALRAQASS 235
Query: 261 GSNGRR-TKLESFSAFLWKMV 280
S + ++++ A++WK V
Sbjct: 236 ASEEKNFSRVQLVVAYIWKHV 256
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 106/262 (40%), Gaps = 21/262 (8%)
Query: 58 INKSFGFGSMVDVLKKAMAEALVSYYALAGE-VVYNDVGEPELLCNNRG--VDFVEAYAN 114
I +S ++V +K +++ L +Y G+ VVY + +C G V A N
Sbjct: 52 ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECN 111
Query: 115 VELKDLNLYNPDDTI----------EGKLVAKKKKNGVLSVQATELKCGGIVVACTFDHR 164
++L +L +P + E ++ K + SVQ T GI + T H
Sbjct: 112 LDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHC 171
Query: 165 IADAYSTDMFLVSWAEIAQSKPISVMPSFRRSMLNPRRPLCIDHE-FDNMYVPISTLXXX 223
+ DA + FL +W IA+S + SF + P I + D Y+ + +
Sbjct: 172 LGDASTRFCFLKAWTSIARSG--NNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESF 229
Query: 224 XXXXHNNPQEANCNKLVSRIYYIKSEQLNEL--QLLATTGSNGRRTKLESFSAFLWKMVA 281
+KL + + + +N+L ++LA + + A++W +A
Sbjct: 230 NEDYVTQSLAGPSDKLRA-TFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIA 288
Query: 282 RSANDGMMITKMGIVVDGRTRL 303
+S ND + + G +D R R+
Sbjct: 289 KSRNDKLQL--FGFPIDRRARM 308
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 21/261 (8%)
Query: 58 INKSFGFGSMVDVLKKAMAEALVSYYALAGE-VVYNDVGEPELLCNNRG--VDFVEAYAN 114
I +S ++V +K +++ L +Y G+ VVY + +C G V A N
Sbjct: 52 ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECN 111
Query: 115 VELKDLNLYNPDDTI----------EGKLVAKKKKNGVLSVQATELKCGGIVVACTFDHR 164
++L +L +P + E ++ K + SVQ T GI + T H
Sbjct: 112 LDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHC 171
Query: 165 IADAYSTDMFLVSWAEIAQSKPISVMPSFRRSMLNPRRPLCIDH-EFDNMYVPISTLXXX 223
+ DA + FL +W IA+S + SF + P I + D Y+ + +
Sbjct: 172 LGDASTRFCFLKAWTSIARSG--NNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESF 229
Query: 224 XXXXHNNPQEANCNKLVSRIYYIKSEQLNEL--QLLATTGSNGRRTKLESFSAFLWKMVA 281
+KL + + + +N+L ++LA + + A++W +A
Sbjct: 230 NEDYVTQSLAGPSDKLRA-TFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIA 288
Query: 282 RSANDGMMITKMGIVVDGRTR 302
+S ND + + G +D R R
Sbjct: 289 KSRNDKLQL--FGFPIDRRAR 307
>pdb|1FJ1|A Chain A, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|C Chain C, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 24/107 (22%)
Query: 37 LPAIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGE 96
L A D+ +++C + DN+ ++FG G+ V++ K+A A VS + + E + + G
Sbjct: 78 LEAEDIAIYYCLQ-----YDNLQRTFGGGTKVEI-KRADAAPTVSIFPPSSEQLTS--GG 129
Query: 97 PELLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 130 ASVVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 160
>pdb|1MRC|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRD|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRE|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRF|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
Length = 219
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ K+++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGKERQNGVL 165
>pdb|1MNU|L Chain L, Unliganded Bactericidal Antibody Against Neisseria
Meningitidis
pdb|2MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
pdb|1MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
Length = 219
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GVFFC + + ++ ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVFFC-----SQSTHVPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 AKGDFTVTVSKKEVVAAVLPLQEHWLPQS-NLDLLLPAIDVGVFFCYKKPAAAADNINKS 61
A G V E + VL L++ +P + NL L P ID+ V +P IN S
Sbjct: 360 ALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPRPGNYRYAINNS 419
Query: 62 FGFGS 66
FGFG
Sbjct: 420 FGFGG 424
>pdb|2UYL|A Chain A, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|M Chain M, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|V Chain V, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|X Chain X, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
Length = 219
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1KEM|L Chain L, Catalytic Antibody 28b4 Fab Fragment
pdb|1KEL|L Chain L, Catalytic Antibody 28b4 Fab Fragment Complexed With Hapten
(1-[n-4'-Nitrobenzyl-N-4'-Carboxybutylamino]
Methylphosphonic Acid)
Length = 217
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2D03|L Chain L, Crystal Structure Of The G91s Mutant Of The Nna7 Fab
Length = 217
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 47/138 (34%)
Query: 6 DFTVTVSKKEVVAAVLPLQEHWLPQSNLDLLLPAIDVGVFFCYKKPAAAADNINKSFGFG 65
DFT+T+S+ E A D+GV++C++ + ++ +FG G
Sbjct: 75 DFTLTISRVE-----------------------AEDLGVYYCFQ-----SSHVPLTFGAG 106
Query: 66 SMVDVLKKAMAEALVSYYALAGEVVYNDVGEPELLCNNRGVDFVEAYANVELKDLNLYNP 125
+ ++ LK+A A VS + + E + + G ++C F+ N Y
Sbjct: 107 TKLE-LKRADAAPTVSIFPPSSEQLTS--GGASVVC------FLN----------NFYPK 147
Query: 126 DDTIEGKLVAKKKKNGVL 143
D ++ K+ +++NGVL
Sbjct: 148 DINVKWKIDGSERQNGVL 165
>pdb|3MCK|L Chain L, Crystal Structure Of Anti-Beta-Amyloid Antibody C705
pdb|3MCK|A Chain A, Crystal Structure Of Anti-Beta-Amyloid Antibody C705
Length = 219
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GVF+C++ + +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVFYCFQ-----GSRVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1BLN|A Chain A, Anti-P-Glycoprotein Fab Mrk-16
pdb|1BLN|C Chain C, Anti-P-Glycoprotein Fab Mrk-16
Length = 214
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ A + ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----ASHAPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1PLG|L Chain L, Evidence For The Extended Helical Nature Of Polysaccharide
Epitopes. The 2.8 Angstroms Resolution Structure And
Thermodynamics Of Ligand Binding Of An Antigen Binding
Fragment Specific For Alpha-(2->8)- Polysialic Acid
Length = 215
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFCFQ-----GTHVPYTFGGGTRLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 373 GLIDWVEAHKPDPALAKIYCTPSSDGPAFVVSSGQRFPVSKVDFGWGKPAFGSYHFPWG- 431
G + W++ KP + + T ++ PA VV+ + S+V F W H P G
Sbjct: 260 GCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF 319
Query: 432 --GDAGYVMPMP 441
GY M +P
Sbjct: 320 LEKTRGYGMVVP 331
>pdb|1TPX|C Chain C, Ovine Recombinant Prp(114-234), Arq Variant In Complex
With The Fab Of The Vrq14 Antibody
pdb|1TQB|C Chain C, Ovine Recombinant Prp(114-234), Vrq Variant In Complex
With The Fab Of The Vrq14 Antibody
pdb|1TQC|C Chain C, Ovine Recombinant Prp(114-234), Arr Variant In Complex
With The Vrq14 Fab Fragment (Igg2a)
Length = 219
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+G++FC++ + ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGIYFCWQ-----GSHFPQTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C + N N Y D ++ K+ +++NGVL
Sbjct: 137 VVC----------FLN------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1T2Q|L Chain L, The Crystal Structure Of An Nna7 Fab That Recognizes An
N-Type Blood Group Antigen
Length = 217
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 47/138 (34%)
Query: 6 DFTVTVSKKEVVAAVLPLQEHWLPQSNLDLLLPAIDVGVFFCYKKPAAAADNINKSFGFG 65
DFT+T+S+ E A D+GV++C++ ++ +FG G
Sbjct: 75 DFTLTISRVE-----------------------AEDLGVYYCFQ-----GSHVPLTFGAG 106
Query: 66 SMVDVLKKAMAEALVSYYALAGEVVYNDVGEPELLCNNRGVDFVEAYANVELKDLNLYNP 125
+ ++ LK+A A VS + + E + + G ++C F+ N Y
Sbjct: 107 TKLE-LKRADAAPTVSIFPPSSEQLTS--GGASVVC------FLN----------NFYPK 147
Query: 126 DDTIEGKLVAKKKKNGVL 143
D ++ K+ +++NGVL
Sbjct: 148 DINVKWKIDGSERQNGVL 165
>pdb|3BKC|L Chain L, Crystal Structure Of Anti-Amyloid Beta Fab Wo2 (P21,
Formb)
pdb|3BKJ|L Chain L, Crystal Structure Of Fab Wo2 Bound To The N Terminal
Domain Of Amyloid Beta Peptide (1-16)
pdb|3BKM|L Chain L, Structure Of Anti-Amyloid-Beta Fab Wo2 (Form A, P212121)
Length = 252
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ A + +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 118 AEDLGVYYCFQ-----ASLVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 169
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C + N N Y D ++ K+ +++NGVL
Sbjct: 170 VVC----------FLN------NFYPKDINVKWKIDGSERQNGVL 198
>pdb|1CBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
pdb|1NBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
Length = 219
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1P2C|A Chain A, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|D Chain D, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|2Q76|A Chain A, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|C Chain C, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 212
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 41 DVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPELL 100
D GV+FC + + + ++FG G+ +D+ K+A A VS + + E + + G ++
Sbjct: 82 DFGVYFCQQ-----SGSWPRTFGGGTKLDI-KRADAAPTVSIFPPSSEQLTS--GGASVV 133
Query: 101 CNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
C F+ N Y D ++ K+ +++NGVL
Sbjct: 134 C------FLN----------NFYPKDINVKWKIDGSERQNGVL 160
>pdb|3BAE|L Chain L, Crystal Structure Of Fab Wo2 Bound To The N Terminal
Domain Of Amyloid Beta Peptide (1-28)
Length = 218
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ A + +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----ASLVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1TET|L Chain L, Crystal Structure Of An Anticholera Toxin Peptide Complex
At 2.3 Angstroms
Length = 216
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ +I +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHIPFTFGSGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2R0Z|L Chain L, Pfa1 Fab Complexed With Gripi Peptide Fragment
pdb|3EYS|L Chain L, Pfa1 Fab Fragment Complexed With Pyro-Glu3-A-Beta (3-8)
pdb|3EYU|L Chain L, Pfa1 Fab Fragment Complexed With Ror2(518-525)
Length = 219
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2DDQ|L Chain L, Crystal Structure Of The Fab Fragment Of A R310 Antibody
Complexed With (R)-Hne-Histidine Adduct
Length = 218
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2Z4Q|A Chain A, Crystal Structure Of A Murine Antibody Fab 528
Length = 219
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+G+++C++ +I +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGIYYCFQ-----GSHIPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPRDINVKWKIDGSERQNGVL 165
>pdb|1CGS|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|2CGR|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|1YNK|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeteners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
pdb|1YNL|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeterners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
Length = 219
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQGTHVPYTFGGGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1ZEA|L Chain L, Structure Of The Anti-Cholera Toxin Antibody Fab Fragment
Te33 In Complex With A D-Peptide
Length = 216
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ +I +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHIPFTFGSGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1DBA|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBB|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBJ|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBK|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBM|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|2DBL|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
Length = 216
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+G++FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGIYFC-----SQSSHVPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1NLD|L Chain L, Fab Fragment Of A Neutralizing Antibody Directed Against
An Epitope Of Gp41 From Hiv-1
Length = 219
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ + ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCWQ-----GTHFPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2IPU|L Chain L, Pfa1 Fab Fragment Complexed With Abeta 1-8 Peptide
pdb|2IPU|K Chain K, Pfa1 Fab Fragment Complexed With Abeta 1-8 Peptide
pdb|2IQ9|L Chain L, Pfa2 Fab Fragment, Triclinic Apo Form
Length = 219
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|4AEI|L Chain L, Crystal Structure Of The Aahii-Fab4c1 Complex
pdb|4AEI|M Chain M, Crystal Structure Of The Aahii-Fab4c1 Complex
pdb|4AEI|N Chain N, Crystal Structure Of The Aahii-Fab4c1 Complex
Length = 219
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2DQT|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Hydrolytic Antibody Fab 6d9 And A Transition-State
Analog
pdb|2DQU|L Chain L, Crystal Form Ii: High Resolution Crystal Structure Of The
Complex Of The Hydrolytic Antibody Fab 6d9 And A
Transition-State Analog
pdb|2DTM|L Chain L, Thermodynamic And Structural Analyses Of Hydrolytic
Mechanism By Catalytic Antibodies
Length = 219
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3IFP|L Chain L, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
pdb|3IFP|B Chain B, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
pdb|3IFP|D Chain D, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
pdb|3IFP|F Chain F, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:12b4) Complex
Length = 219
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1I9I|L Chain L, Native Crystal Structure Of The Recombinant Monoclonal
Wild Type Anti-Testosterone Fab Fragment
pdb|1I9J|L Chain L, Testosterone Complex Structure Of The Recombinant
Monoclonal Wild Type Anti-Testosterone Fab Fragment
Length = 219
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|M Chain M, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 219
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2GJZ|L Chain L, Structure Of Catalytic Elimination Antibody 13g5 From A
Crystal In Space Group P2(1)
pdb|2GJZ|A Chain A, Structure Of Catalytic Elimination Antibody 13g5 From A
Crystal In Space Group P2(1)
pdb|2GK0|L Chain L, Structure Of Catalytic Elimination Antibody 13g5 From A
Twinned Crystal In Space Group C2
pdb|2GK0|A Chain A, Structure Of Catalytic Elimination Antibody 13g5 From A
Twinned Crystal In Space Group C2
Length = 217
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHLPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2OJZ|L Chain L, Anti-Dna Antibody Ed10
pdb|2OJZ|M Chain M, Anti-Dna Antibody Ed10
pdb|2OK0|L Chain L, Fab Ed10-Dna Complex
Length = 219
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ +I +FG G+ ++V K++ A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHIPLTFGAGTKLEV-KRSDAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2HKF|L Chain L, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|L Chain L, Crystal Structure Of The Fab M75
Length = 219
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPFTFGSGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3O6K|L Chain L, Crystal Structure Of Anti-Tat Hiv Fab'11h6h1
pdb|3O6L|L Chain L, Anti-Tat Hiv 11h6h1 Fab' Complexed With A 15-Mer Tat
Peptide
pdb|3O6M|L Chain L, Anti-Tat Hiv 11h6h1 Fab' Complexed With A 9-Mer Tat
Peptide
Length = 219
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+G+++C++ + ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGIYYCWQ-----GTHFPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2R0W|L Chain L, Pfa2 Fab Complexed With Abeta1-8
Length = 219
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1F3D|L Chain L, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten.
pdb|1F3D|J Chain J, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten
Length = 219
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPYTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1T66|L Chain L, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|C Chain C, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 219
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPWTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|4FAB|L Chain L, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 219
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPWTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2IPT|L Chain L, Pfa1 Fab Fragment
pdb|2IQA|L Chain L, Pfa2 Fab Fragment, Monoclinic Apo Form
pdb|2IQA|A Chain A, Pfa2 Fab Fragment, Monoclinic Apo Form
Length = 219
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPLTFGAGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3VI3|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 219
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 26/106 (24%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDV-LKKAMAEALVSYYALAGEVVYNDVGEP 97
A DVG++FC + ++ F FG+ + LK+A A VS + + E + + G
Sbjct: 85 AADVGIYFCLQ-------HLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTS--GGA 135
Query: 98 ELLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 136 SVVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1FLR|L Chain L, 4-4-20 Fab Fragment
Length = 219
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPWTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3NZ8|B Chain B, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
pdb|3NZ8|L Chain L, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
Length = 218
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPFTFGSGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3U9U|B Chain B, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|D Chain D, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 219
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPWTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLIDWVEA 380
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+ VEA
Sbjct: 215 GAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN-VEA 272
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1RMF|L Chain L, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 219
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPLTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1AXT|L Chain L, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
Length = 216
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQGTHVPYTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1CLZ|L Chain L, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 219
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCFQ-----GSHVPFTFGSGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2VQ1|A Chain A, Anti Trimeric Lewis X Fab54-5c10-A
pdb|2VQ1|E Chain E, Anti Trimeric Lewis X Fab54-5c10-A
Length = 217
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 24/107 (22%)
Query: 37 LPAIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGE 96
+ A D+G++FC + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 83 MEAEDLGIYFC-----SQTTHVPWTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GG 134
Query: 97 PELLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 135 ASVVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3FO9|L Chain L, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
pdb|3FO9|A Chain A, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
Length = 219
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQGTHVPYTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+G++FC + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGIYFC-----SQTTHVPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1KFA|L Chain L, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
pdb|1KFA|M Chain M, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
Length = 217
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC + + ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGVYFC-----SQSTHVPFTFGSGTKLEI-KRADAGPTVSSFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1UB6|L Chain L, Crystal Structure Of Antibody 19g2 With Sera Ligand
pdb|1UB6|B Chain B, Crystal Structure Of Antibody 19g2 With Sera Ligand
Length = 213
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A DVGV++C A + +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 84 AEDVGVYYC-----AQNLELPPTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 135
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 136 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 164
>pdb|3BZ4|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3C5S|A Chain A, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C5S|C Chain C, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C6S|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3GGW|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
pdb|3GGW|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
Length = 219
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 28/107 (26%)
Query: 39 AIDVGVFFCYKKPAAAADNIN--KSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGE 96
A DVG+++C A N+ ++FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDVGIYYC-------AHNVELPRTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GG 134
Query: 97 PELLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 135 ASVVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1FL3|L Chain L, Crystal Structure Of The Blue Fluorescent Antibody (19g2)
In Complex With Stilbene Hapten At 277k
pdb|1FL3|B Chain B, Crystal Structure Of The Blue Fluorescent Antibody (19g2)
In Complex With Stilbene Hapten At 277k
Length = 214
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A DVGV++C A + +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 84 AEDVGVYYC-----AQNLELPPTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 135
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 136 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 164
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1C1E|L Chain L, Crystal Structure Of A Diels-alderase Catalytic Antibody
1e9 In Complex With Its Hapten
Length = 216
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV+FC++ + + +FG G+ +++ K A A VS + + E + + G
Sbjct: 85 AEDLGVYFCFQ-----STHFFPTFGGGTKLEI-KSADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C + N N Y D ++ K+ +++NGVL
Sbjct: 137 VVC----------FLN------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|3GNM|L Chain L, The Crystal Structure Of The Jaa-f11 Monoclonal Antibody
Fab Fragment
Length = 219
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ ++ +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 ADDLGVYYCFQ-----GSHVPFTFGSGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|2W60|B Chain B, Anti Citrullinated Collagen Type 2 Antibody Acc4
pdb|2W65|B Chain B, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
pdb|2W65|D Chain D, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
Length = 217
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+GV++C++ + +FG G+ ++ LK+A A VS + + E + + G
Sbjct: 85 AEDLGVYYCWQ-----GTHFPLTFGAGTKLE-LKRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 11/48 (22%)
Query: 340 GQNVKELV-----------EKPLSWVATQVHNFLENAVTKDHFLGLID 376
GQNV++++ E+ +W+ T+++ LE + +F+G++D
Sbjct: 414 GQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLD 461
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1CL7|L Chain L, Anti Hiv1 Protease Fab
Length = 216
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 39 AIDVGVFFCYKKPAAAADNINKSFGFGSMVDVLKKAMAEALVSYYALAGEVVYNDVGEPE 98
A D+G+++C++ + +FG G+ +++ K+A A VS + + E + + G
Sbjct: 85 AEDLGIYYCFQ-----GSHFPPTFGGGTKLEI-KRADAAPTVSIFPPSSEQLTS--GGAS 136
Query: 99 LLCNNRGVDFVEAYANVELKDLNLYNPDDTIEGKLVAKKKKNGVL 143
++C F+ N Y D ++ K+ +++NGVL
Sbjct: 137 VVC------FLN----------NFYPKDINVKWKIDGSERQNGVL 165
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 327 GSYFGNVLSIPFGGQNVKELVEKPLSWVATQVHNFLENAVTK--DHFL---GLID 376
G+Y G ++ P ++ K +W TQV + LEN TK D F GLI+
Sbjct: 215 GAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,339,482
Number of Sequences: 62578
Number of extensions: 605625
Number of successful extensions: 1698
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 135
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)