Your job contains 1 sequence.
>011530
MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK
RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICREL
NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREA
QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG
TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK
LYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIE
DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK
CQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVG
SGV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011530
(483 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119073 - symbol:AT4G21770 species:3702 "Arabi... 1643 5.8e-169 1
DICTYBASE|DDB_G0277359 - symbol:DDB_G0277359 "Pseudouridy... 127 1.2e-10 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 170 5.9e-10 1
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 158 1.9e-08 1
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 158 1.9e-08 1
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 116 1.6e-07 3
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 116 6.2e-07 2
GENEDB_PFALCIPARUM|PFE1080w - symbol:PFE1080w "ribosomal ... 115 8.2e-07 2
UNIPROTKB|Q8I3P7 - symbol:PFE1080w "Ribosomal large subun... 115 8.2e-07 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 104 1.4e-06 2
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 94 1.8e-06 2
TIGR_CMR|CPS_4080 - symbol:CPS_4080 "pseudouridine syntha... 89 3.2e-06 2
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 94 7.4e-06 2
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 134 8.9e-06 1
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 131 1.1e-05 1
UNIPROTKB|O07166 - symbol:Rv3300c "Pseudouridine synthase... 91 1.3e-05 2
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 128 2.4e-05 1
DICTYBASE|DDB_G0281097 - symbol:DDB_G0281097 "pseudouridi... 132 2.6e-05 1
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 127 3.1e-05 1
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 131 3.5e-05 1
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 101 3.9e-05 2
POMBASE|SPAC18B11.02c - symbol:SPAC18B11.02c "tRNA pseudo... 96 4.2e-05 2
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 125 4.6e-05 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 92 6.2e-05 2
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 124 6.4e-05 1
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 124 6.7e-05 1
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 86 7.2e-05 2
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 125 0.00011 1
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 122 0.00012 1
UNIPROTKB|F1N088 - symbol:RPUSD2 "Uncharacterized protein... 91 0.00014 2
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 121 0.00016 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 84 0.00019 2
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 119 0.00024 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 119 0.00025 1
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 87 0.00027 2
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 89 0.00029 2
UNIPROTKB|B4DDD1 - symbol:RPUSD2 "cDNA FLJ57803, highly s... 90 0.00033 2
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 93 0.00036 3
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 117 0.00040 1
UNIPROTKB|Q8IZ73 - symbol:RPUSD2 "RNA pseudouridylate syn... 90 0.00045 2
UNIPROTKB|F1PK69 - symbol:RPUSD2 "Uncharacterized protein... 90 0.00046 2
RGD|1306147 - symbol:Rpusd2 "RNA pseudouridylate synthase... 88 0.00048 2
ASPGD|ASPL0000068180 - symbol:AN10936 species:162425 "Eme... 126 0.00049 2
>TAIR|locus:2119073 [details] [associations]
symbol:AT4G21770 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161555 EMBL:AL035527
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AY142506
EMBL:AK226645 IPI:IPI00544059 PIR:T05852 RefSeq:NP_193908.1
UniGene:At.32599 ProteinModelPortal:Q9SVS0 PRIDE:Q9SVS0
EnsemblPlants:AT4G21770.1 GeneID:828265 KEGG:ath:AT4G21770
TAIR:At4g21770 eggNOG:NOG306455 HOGENOM:HOG000242495
InParanoid:Q9SVS0 OMA:THQIDNC PhylomeDB:Q9SVS0
ProtClustDB:CLSN2685595 Genevestigator:Q9SVS0 Uniprot:Q9SVS0
Length = 472
Score = 1643 (583.4 bits), Expect = 5.8e-169, P = 5.8e-169
Identities = 311/477 (65%), Positives = 373/477 (78%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLS-FSSSNRNFVCESWKRHVFX 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S +
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTTP--LFRSNKHSPRFISSPKRFTCLSLLK---- 56
Query: 66 XXXXXXXXXXXXPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 57 -TDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
IEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY A
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 295
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIE 360
L APLP+GI++HYMRP N+APRLV+E GW+LCQLEV+ECKK+PWPDA K + IE
Sbjct: 296 LAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIE 355
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
DCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P NP+GK
Sbjct: 356 DCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGK 415
Query: 421 CQKEYASDDD-KEMAVIEWISQHGMEPSVAIGLQACHISWDD--GECCYEARSPWWR 474
+K Y +++ KE AV EWI +HG EP V IGLQAC ISWDD GE YEA +PWWR
Sbjct: 416 AKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472
>DICTYBASE|DDB_G0277359 [details] [associations]
symbol:DDB_G0277359 "Pseudouridylate synthase PUS5"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 dictyBase:DDB_G0277359
GO:GO:0003723 EMBL:AAFI02000019 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 KO:K01718 RefSeq:XP_642774.1
ProteinModelPortal:Q86K31 STRING:Q86K31 EnsemblProtists:DDB0217957
GeneID:8620965 KEGG:ddi:DDB_G0277359 InParanoid:Q86K31 OMA:YIIFENQ
Uniprot:Q86K31
Length = 386
Score = 127 (49.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 45/169 (26%), Positives = 74/169 (43%)
Query: 179 EAQKTFRI---THVDQIVEAGTYLRVHVHPKRFPRCYDIDW---NSRIIAVTESHVVLDK 232
E KT I +D+++ G+ L+ +P R ID+ N II + +V+DK
Sbjct: 71 EVTKTKTIPKRVQIDKVINKGSLLKYFFYP-RVNSTDHIDFKNFNKYIIFENQYFLVIDK 129
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTP-------LRTTHQIDNCTEGCVVLARTQEY 285
P G +VG D++ + +F L L H +D+ T G V+A+ +
Sbjct: 130 PHGINVGPIVDHLHNNFTSFVKDWLKKRNNNNDNNLILYNPHNLDSPTRGLFVIAKDFNF 189
Query: 286 CSIFHRKIREKKVKKLYLALT-------TAPLPVGIMTHYMRPINIAPR 327
S F++ + +KKV K Y A + GI H+M N +P+
Sbjct: 190 LSKFNKLLSDKKVSKKYKAFIPIKENEENIEIKPGIYKHFMEITNHSPK 238
Score = 96 (38.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+I+L+TGRTHQ+RAQL+ G P++ D MY
Sbjct: 306 EIQLITGRTHQIRAQLSKLGFPLLSDIMY 334
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 170 (64.9 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 55/179 (30%), Positives = 83/179 (46%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG +V G + + G R H++D T G +VLART+E +
Sbjct: 101 IVLNKPAGLAVQGGSGQTRHVDGLSEALRFGNDENPRLVHRLDKDTSGVLVLARTREAAA 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC--QLEVMECKK 345
R + +K+Y AL G+ T Y+ I LV G + + E M
Sbjct: 161 RLTAAFRHRNTRKIYWALVA-----GVPTPYLGEIKTG--LVKAGGHGARGEGEKMNVVH 213
Query: 346 VPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ DAT G +A++ + A ++ +TGRTHQ+RA +A G PI+GD Y
Sbjct: 214 LSELDATPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGIGHPIIGDGKY 272
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 60/196 (30%), Positives = 91/196 (46%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI A
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGIH-RYRCPI-FA--- 213
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V+ YL + E +P T+ + S D + K +TG+ HQ+R
Sbjct: 214 VNMNGYLMSGNMEE---LPTDSTTIFERIKYN----ASLDQSL-VKCVPITGKFHQIRIH 265
Query: 389 LAACGAPIVGDSMYMP 404
L G PIV DS Y P
Sbjct: 266 LRNLGFPIVNDSFYQP 281
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 60/196 (30%), Positives = 91/196 (46%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI A
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGIH-RYRCPI-FA--- 213
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V+ YL + E +P T+ + S D + K +TG+ HQ+R
Sbjct: 214 VNMNGYLMSGNMEE---LPTDSTTIFERIKYN----ASLDQSL-VKCVPITGKFHQIRIH 265
Query: 389 LAACGAPIVGDSMYMP 404
L G PIV DS Y P
Sbjct: 266 LRNLGFPIVNDSFYQP 281
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 116 (45.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
V+++KPAG V T + E + A + G LR +++D T G +LA++
Sbjct: 88 VIVNKPAGLPVHRTAEAGEANLVELAEHFMAGRGTAVKLRPVNRLDRGTSGATILAKSSS 147
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
+ R ++E+ + KLYLA+T LP
Sbjct: 148 SAGMLGRYVKEEGLDKLYLAVTDGSLP 174
Score = 72 (30.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 366 SRDYAYECKIKL-LTGRTHQVRAQLAACGAPIVGDSMY 402
+RD A + + ++GR HQ+R L+A G P+ GD Y
Sbjct: 196 ARDTAVSFALVIPISGRMHQIRKHLSAIGHPVRGDRRY 233
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 183 TFRITHVDQIVEAGTYLR 200
T++IT +D A ++LR
Sbjct: 3 TYQITDIDHCRSAESFLR 20
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 116 (45.9 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 36/141 (25%), Positives = 66/141 (46%)
Query: 166 LSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTE 225
L+ ++ V+ T I +VD+I + VH R + II E
Sbjct: 30 LNSSKALASSRVQRGD-TVSIRNVDKIASRSKEAK-EVHDDALLRLV----SDNIIYKDE 83
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ + ++KPAG +V G T + S + ++ + L H++D T G +++AR Q
Sbjct: 84 NIIAINKPAGVNVQGGT-KVSISLSDLLNKIIP-GEQLHIVHRLDRDTSGVLIIARGQSI 141
Query: 286 CSIFHRKIREKKVKKLYLALT 306
I ++R ++V+K Y+A+T
Sbjct: 142 ARILSEELRFRRVRKEYIAVT 162
Score = 68 (29.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMP-AAIAQLSSPGLNPF 418
+TGR HQ+R L+ PI+GD+ Y + Q +S L+ F
Sbjct: 215 VTGRKHQLRIHLSQFCCPIIGDTKYSKDTEVQQHNSLHLHAF 256
>GENEDB_PFALCIPARUM|PFE1080w [details] [associations]
symbol:PFE1080w "ribosomal large subunit
pseudouridylate synthase, putative" species:5833 "Plasmodium
falciparum" [GO:0004730 "pseudouridylate synthase activity"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723
GO:GO:0006364 EMBL:AL844504 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01718 RefSeq:XP_001351773.1
ProteinModelPortal:Q8I3P7 EnsemblProtists:PFE1080w:mRNA
GeneID:813031 KEGG:pfa:PFE1080w EuPathDB:PlasmoDB:PF3D7_0521500
HOGENOM:HOG000283688 ProtClustDB:CLSZ2432216 Uniprot:Q8I3P7
Length = 487
Score = 115 (45.5 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 219 RIIAVTESHVVLDKPAGTSVG-GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II + +VL+KP + G D+I S T + L R Q+D T G +
Sbjct: 65 KIIYENDYFLVLNKPYDIKLEKGKLDDIYPSVETLLYQKRKLDV-FRICGQLDYATSGLL 123
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
++A+ + C+I + I K + K+YLA+ LP+ I+ H PI+
Sbjct: 124 IVAKDKLSCNILNYNIESKNISKIYLAILYGHLPLDIL-HINTPIS 168
Score = 75 (31.5 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
C+++ +TGR HQ+R + G+ IVGD Y
Sbjct: 212 CEMRTVTGRRHQLRLHSLSLGSSIVGDETY 241
>UNIPROTKB|Q8I3P7 [details] [associations]
symbol:PFE1080w "Ribosomal large subunit pseudouridylate
synthase, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0006364
EMBL:AL844504 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 KO:K01718
RefSeq:XP_001351773.1 ProteinModelPortal:Q8I3P7
EnsemblProtists:PFE1080w:mRNA GeneID:813031 KEGG:pfa:PFE1080w
EuPathDB:PlasmoDB:PF3D7_0521500 HOGENOM:HOG000283688
ProtClustDB:CLSZ2432216 Uniprot:Q8I3P7
Length = 487
Score = 115 (45.5 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 219 RIIAVTESHVVLDKPAGTSVG-GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II + +VL+KP + G D+I S T + L R Q+D T G +
Sbjct: 65 KIIYENDYFLVLNKPYDIKLEKGKLDDIYPSVETLLYQKRKLDV-FRICGQLDYATSGLL 123
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
++A+ + C+I + I K + K+YLA+ LP+ I+ H PI+
Sbjct: 124 IVAKDKLSCNILNYNIESKNISKIYLAILYGHLPLDIL-HINTPIS 168
Score = 75 (31.5 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
C+++ +TGR HQ+R + G+ IVGD Y
Sbjct: 212 CEMRTVTGRRHQLRLHSLSLGSSIVGDETY 241
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 104 (41.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K++LLTGRTHQ+RA AA G P+ GD +Y
Sbjct: 220 KVELLTGRTHQIRAHFAAIGHPLAGDDLY 248
Score = 78 (32.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS---RALG-LTTPLRTTHQIDNCTEGCVVLARTQ 283
+V+DKPAG ++ S R G + +++D T G +++A+
Sbjct: 87 IVIDKPAGVLAHPVKNHFAPSMQELTLSYYRDKGRIFEGFYPIYRLDRNTSGPMLIAKFS 146
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPL 310
+ + +R++++ K+YLAL PL
Sbjct: 147 LIAEMLNNSLRKRQINKIYLALIEGPL 173
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 94 (38.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAA-IAQLSSPGL 415
+++L TGRTHQ+R +A G P+VGD +Y A I L P L
Sbjct: 230 RLRLETGRTHQIRVHMAEAGFPLVGDEVYGGAGRINNLRDPVL 272
Score = 89 (36.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/85 (35%), Positives = 41/85 (48%)
Query: 228 VVLDKPAGTSV-------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
VV+DKPAG V GGT N + T S G P H+ID T G +V+A
Sbjct: 94 VVVDKPAGMVVHPAAGNPGGTLVNALLAHCTDLSGIGGEIRP-GIVHRIDKDTSGVLVVA 152
Query: 281 RTQEYCSIFHRKIREKKVKKLYLAL 305
++ R+ + VK++YLAL
Sbjct: 153 KSDRAHESLSRQFHDHTVKRVYLAL 177
>TIGR_CMR|CPS_4080 [details] [associations]
symbol:CPS_4080 "pseudouridine synthase Rlu family
protein, TIGR01621" species:167879 "Colwellia psychrerythraea 34H"
[GO:0001522 "pseudouridine synthesis" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_270735.1 STRING:Q47WT7 GeneID:3519849 KEGG:cps:CPS_4080
PATRIC:21471031 HOGENOM:HOG000275915 OMA:GWVIGDM
BioCyc:CPSY167879:GI48-4093-MONOMER InterPro:IPR006508
TIGRFAMs:TIGR01621 Uniprot:Q47WT7
Length = 230
Score = 89 (36.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 223 VTESH--VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCV 277
+ E H +V+DK AG + D I + + L T L H++D T G V
Sbjct: 5 IAEHHDFIVVDKEAGVNFHDEGD-IGSGLFSLVKKQLQSQNNNTELYPVHRLDKMTSGLV 63
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
V A+T IF + + ++K YLA+
Sbjct: 64 VFAKTLACAQIFGQLFNDHDIEKYYLAI 91
Score = 87 (35.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 365 PSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P++ Y +K +G+THQ+R LA+ GAPIVGD +Y
Sbjct: 135 PNKQRLY--LLKPHSGKTHQLRVALASIGAPIVGDPLY 170
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 94 (38.1 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++KL TGRTHQ+R AA G P+ GD++Y
Sbjct: 223 EVKLETGRTHQIRVHFAAIGHPVAGDAVY 251
Score = 82 (33.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 28/121 (23%), Positives = 52/121 (42%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVG---GTTDN-IEESCAT 251
G + + + P+ P D II + ++++KP G +V G D+ +
Sbjct: 56 GDTITIEIPPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLA 115
Query: 252 FASRALGLTTPLRT--THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
PLR H++D T G +++A+ +E + + +E+ V+K YL L
Sbjct: 116 LEPEMEDFDDPLRPGIVHRLDKDTSGLLLVAKNREALANLSAQFKERTVRKYYLTLVQGE 175
Query: 310 L 310
L
Sbjct: 176 L 176
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 134 (52.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 51/190 (26%), Positives = 85/190 (44%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ES +V+DKP+G V T ++ T + G+ +++D T G ++L
Sbjct: 121 IVFEDESILVIDKPSGIPVH-PTGQFYQNTITELLKLHGVDA--LPCYRLDKITSGLLIL 177
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + + IR + + K+YLA P + + A E +E
Sbjct: 178 AKNSQSAGEIQKSIRSRDMIKIYLARVKGRFP---HSELILDNENAAETTFEDTSKVTVE 234
Query: 340 VMECKKV-PWPDATVGKAYSIEDCG--WPSRDYAY--ECKI--KLLTGRTHQVRAQLAAC 392
+ + P VG + S + +P R +++ E + K +TGRTHQ+R LA
Sbjct: 235 MTPIYSIDPKRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARL 294
Query: 393 GAPIVGDSMY 402
G PIV DS+Y
Sbjct: 295 GHPIVNDSVY 304
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 47/142 (33%), Positives = 67/142 (47%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + ++ +E++V K YLAL + +T IN
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVT-----IN 115
Query: 324 IA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
A R +EG +C C+ P P T + +E G S D + +K LTG
Sbjct: 116 YAIGRNSTEGRTHTMCIEGTHGCEN-PKPSLT--ELLVLEH-GLYSGDPVSKVLLKPLTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQ+R +A G PIVGD Y
Sbjct: 172 RTHQLRVHCSALGHPIVGDLTY 193
>UNIPROTKB|O07166 [details] [associations]
symbol:Rv3300c "Pseudouridine synthase" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005886
GenomeReviews:AL123456_GR GO:GO:0003723 EMBL:BX842582
HOGENOM:HOG000275916 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K06177 EMBL:CP003248 PIR:F70533 RefSeq:NP_217817.1
RefSeq:YP_006516777.1 ProteinModelPortal:O07166 SMR:O07166
EnsemblBacteria:EBMYCT00000003755 GeneID:13318123 GeneID:887958
KEGG:mtu:Rv3300c KEGG:mtv:RVBD_3300c PATRIC:18155955
TubercuList:Rv3300c OMA:FFRMHEV ProtClustDB:CLSK792416
Uniprot:O07166
Length = 305
Score = 91 (37.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 366 SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEY 425
+RD Y ++ TGRTHQ+R +AA G PI+GD +Y P I+ + P +
Sbjct: 214 ARDGLY--RLTPTTGRTHQLRVHMAALGIPIMGDPLY-PNVISVAAHDFSTPLQLLAQRI 270
Query: 426 ASDD 429
DD
Sbjct: 271 EFDD 274
Score = 83 (34.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/156 (23%), Positives = 67/156 (42%)
Query: 164 SVLSKRSSIKGKTVREAQKTFRITHVD-QIVEAGTYLR----VHVHPKRFPRCYDIDWNS 218
SVL++ ++ G R + D +V++GT L VH++ + P + ++
Sbjct: 27 SVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVVHLY-RDLPDEVPVPFDV 85
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++ VV+DKP + ++ ++ R LGL L H++D T G ++
Sbjct: 86 PVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPE-LSPAHRLDRLTAGVLL 144
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
+E + V+K YLA AP+ G+
Sbjct: 145 FTTRREVRGSYQTMFARGLVRKTYLA--RAPVAPGL 178
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 46/142 (32%), Positives = 67/142 (47%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + ++ +E++V K YLAL + +T IN
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVT-----IN 115
Query: 324 IA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
A R +EG +C C+ P P T + +E G + D + +K LTG
Sbjct: 116 YAIGRNSTEGRTHTMCIEGTHGCEN-PKPSLT--ELLVLEH-GLYAGDPVSKVLLKPLTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQ+R +A G PIVGD Y
Sbjct: 172 RTHQLRVHCSALGHPIVGDLTY 193
>DICTYBASE|DDB_G0281097 [details] [associations]
symbol:DDB_G0281097 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
dictyBase:DDB_G0281097 EMBL:AAFI02000040 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 KO:K15454 RefSeq:XP_640817.1
ProteinModelPortal:Q54UF9 STRING:Q54UF9 EnsemblProtists:DDB0238343
GeneID:8622871 KEGG:ddi:DDB_G0281097 OMA:FAKERWF Uniprot:Q54UF9
Length = 578
Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 59/220 (26%), Positives = 89/220 (40%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+++ E+ VV+DKP+ V S + G+ L H++D T G ++
Sbjct: 241 KIVSLDENVVVVDKPSSIPVHPCGRFRHNSLMYILASEHGINQ-LYGVHRLDRLTSGLLL 299
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG-----IMTHYMRPINIAPRLVSEGW 333
LART + + +I+ V K YLA P + + I + L +
Sbjct: 300 LARTPDSANKKANQIQSGLVSKQYLAKVIGKFPGSDTINSSSSSFNEQIKLCKHLEDGTF 359
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT---GRTHQVRAQLA 390
+ Q V++ ++ VG SI S D + I L T GRTHQ+R L
Sbjct: 360 IIDQPIVIQSMRLGINHVGVGGKPSITHIKLFSYDQSTNTSIVLCTPKTGRTHQIRVHLK 419
Query: 391 ACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD 430
G PI D +Y + S L GK Y DDD
Sbjct: 420 WLGFPIANDPLYNNEF--KESFKALTSDGKTS--YIFDDD 455
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 58/193 (30%), Positives = 83/193 (43%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQI 269
I RI+ +V+DKPAG V G + I+ AL + P L H++
Sbjct: 83 ISLEMRILYEEADLLVIDKPAGLPVHGGS-GIQGGVI----EALRIMRPKVRLLELVHRL 137
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T GC+++A+ + H + ++KV K YL L G + P+ RL
Sbjct: 138 DRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKGQWQGGECRVEV-PLK-KNRLQ 195
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
S G + ++E E K TV + I + A + K LTGRTHQ+R
Sbjct: 196 S-GERMVKVE-KEGKSA----VTVFRPLKIFE-------QASLIEAKPLTGRTHQIRVHA 242
Query: 390 AACGAPIVGDSMY 402
A G PI GD Y
Sbjct: 243 AHLGYPIAGDEKY 255
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 131 (51.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E +V+DKP+ V T + R LG + + +++D T G + L
Sbjct: 163 IVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLERQLGYS--VHPCNRLDKPTSGLMFL 220
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQL 338
A+T +++ ++V K Y+A P+GI+ +P+ ++ P++ +C++
Sbjct: 221 AKTPLGADRMGDQMKAREVTKEYVARVKGEFPIGIV-EVDKPVRSVNPKVALNA--VCEM 277
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
K TV + S + G S +CK LTGRTHQ+R L G PI
Sbjct: 278 SDENAKHAK----TVFQRVSYD--GQTS---IVKCKP--LTGRTHQIRVHLQYLGFPIAN 326
Query: 399 DSMY 402
D +Y
Sbjct: 327 DPIY 330
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 101 (40.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 35/142 (24%), Positives = 60/142 (42%)
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
F +D ++ L VH P C I +I+ + E VV++KPA V
Sbjct: 346 FEKVPIDYRLKHNDLLANIVHRHEVPVTCQPI----KIVHMDEDIVVVNKPASIPVHPCG 401
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
+ ++ L LRT H++D T G ++ R+ + ++IR ++V+K Y
Sbjct: 402 RYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEY 460
Query: 303 LALTTAPLPVGIMTHYMRPINI 324
+ P GI+ PI +
Sbjct: 461 ICRVEGVFPDGIV-ECKEPIEV 481
Score = 78 (32.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
K LTGR HQ+R L G PI+ D +Y L + GK +E D
Sbjct: 517 KPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGDIGGKSDEELIRD 569
>POMBASE|SPAC18B11.02c [details] [associations]
symbol:SPAC18B11.02c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=ISO] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PomBase:SPAC18B11.02c GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 KO:K15454 OrthoDB:EOG4BK8C8
PIR:T37912 RefSeq:NP_592881.1 ProteinModelPortal:Q09709
STRING:Q09709 EnsemblFungi:SPAC18B11.02c.1 GeneID:2542607
KEGG:spo:SPAC18B11.02c OMA:YRKNTVV NextBio:20803656 Uniprot:Q09709
Length = 394
Score = 96 (38.9 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 37/155 (23%), Positives = 61/155 (39%)
Query: 159 EVTDPSVLSKRSSIKGKTVREAQKTF--RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW 216
EV + + S K +R Q +I +VD ++E G + H H P D
Sbjct: 47 EVFNTEFRDRESGYYEKAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVS---DQ 103
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES+VV+DKPAG V T + + L +++D T G
Sbjct: 104 PVGIVHEDESYVVIDKPAGVPVH-PTGRYNHNTVLHILMKENKCSLLYPCNRLDRLTSGL 162
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ +++ + + K +KK Y+A P
Sbjct: 163 MFFSKSPKAAEEMRVHMISKSLKKEYVARVIGEFP 197
Score = 76 (31.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKE 424
K LTGRTHQ+R L G PI D +Y A ++ P L G+ E
Sbjct: 246 KPLTGRTHQLRVHLQYLGYPIANDPIY---ANKRVWGPSLGKNGEGSNE 291
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 42/142 (29%), Positives = 66/142 (46%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + +R ++++V K YLAL G +T ++
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGQAYRCFKDRRVTKAYLALVR-----GTVTEENLSLD 115
Query: 324 IA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
A + +EG +C C+ P P T ++ + G D + ++ LTG
Sbjct: 116 FAIGKNTTEGKTHMMCTEGTEGCEN-PKPCQT---EVTVLEYGTYDGDQVTKVLLQPLTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQ+R +A G PIVGD Y
Sbjct: 172 RTHQLRVHCSAIGHPIVGDYTY 193
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 92 (37.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 227 HVVLDKPAGTSVGGTTDNIE---ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
++ ++K +G + T ++ E T RA G P R H++D T G ++ ++
Sbjct: 88 YLAVNKASGLNCQRTPYQLKGTVEYAVTLHFRACGSAEPARVIHRLDRGTSGVMIFPASR 147
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPV 312
+ R+++E +V+K+Y AL A +P+
Sbjct: 148 RAAAHISRELKEGRVEKVYWALV-AGMPL 175
Score = 75 (31.5 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R LA G I+GD+ Y
Sbjct: 224 TGRTHQIRVHLAHGGLSIIGDTTY 247
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 124 (48.7 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 46/146 (31%), Positives = 70/146 (47%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + ++ +E++V K YLAL + MT IN
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESRMT-----IN 115
Query: 324 IA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
A R +EG +C +E E + P P T + +E G + D + ++ LTG
Sbjct: 116 YAIGRNSTEGRAHTMC-IEGTEGCENPKPSLT--ELVVLEH-GLYAGDPVSKVLLQPLTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAA 406
RTHQ+R +A P+VGD Y A+
Sbjct: 172 RTHQLRVHCSALSHPVVGDLTYGQAS 197
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 47/153 (30%), Positives = 71/153 (46%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + +R ++++V K YLAL + MT I+
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHVQESRMT-----IS 115
Query: 324 IA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
A + +EG +C C+ P P T + +E G + D + ++ LTG
Sbjct: 116 YAIGKNSTEGRTHTMCIEGTQGCEN-PKPSLT--ELVVLEH-GLYAGDPVSKVLLQPLTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSP 413
RTHQ+R +A G PIVGD Y A+ Q P
Sbjct: 172 RTHQLRVHCSALGHPIVGDLTY-GHALGQEDQP 203
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 86 (35.3 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMY 402
KL TGRTHQ+RA LA+ I+GD +Y
Sbjct: 228 KLFTGRTHQIRAHLASLNRHILGDGLY 254
Score = 82 (33.9 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 32/155 (20%), Positives = 72/155 (46%)
Query: 164 SVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAV 223
++L ++ ++ + + +F++ + D I A L + P+ +++D++ ++
Sbjct: 28 ALLIEKDCVQVNDKIQDKNSFKLKNGDIISIASLKLCNEIKPQ-----FEVDFDIDVLYE 82
Query: 224 TESHVVLDKPAGTSVGGTT--------DNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
E +VL+KP+ V G + D + E T ++ LG H++D T G
Sbjct: 83 DEDLLVLNKPSNLVVHGASSVKNATLVDWLIEKKYTLSN--LGGEIRAGLVHRLDKDTSG 140
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+++A+ ++ +K + ++YLAL PL
Sbjct: 141 SILIAKNNFTHQKLSEQLADKSMGRIYLALIDLPL 175
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 47/186 (25%), Positives = 81/186 (43%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++I ++ +V+DKP+G V T + LG + +++D T G +
Sbjct: 189 KVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFV--VNPCNRLDRLTSGLMF 246
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPIN-IAPRLVSEGWYLC 336
LA+T + +++ ++V K Y+A P ++ +P+ I PRL +C
Sbjct: 247 LAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVIVE--KPLKLIEPRLALNA--VC 302
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
Q++ K TV S + + +CK LTGR+HQ+R L G PI
Sbjct: 303 QMDEKGAKHAK----TVFNRISYD-----GKTSIVKCKP--LTGRSHQIRVHLQYLGHPI 351
Query: 397 VGDSMY 402
D +Y
Sbjct: 352 ANDPIY 357
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 43/141 (30%), Positives = 64/141 (45%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + +R +E++V K YLAL + +T I
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVT-ISHAIG 119
Query: 324 IAPRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
R +EG +C C+ P P T + + G + D + +K LTGR
Sbjct: 120 ---RNSTEGRAHTMCIEGSQGCEN-PKPSLT---DLVVLEHGLYAGDPVSKVLLKPLTGR 172
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R +A G P+VGD Y
Sbjct: 173 THQLRVHCSALGHPVVGDLTY 193
>UNIPROTKB|F1N088 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:DAAA02028551 IPI:IPI01002170 Ensembl:ENSBTAT00000004148
Uniprot:F1N088
Length = 552
Score = 91 (37.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++A E VV+DKP+ V + F L H++D T G ++
Sbjct: 231 RLLAENEDVVVVDKPSSIPVH-PCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLM 289
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
A+T H ++R+++++K Y+ P +T
Sbjct: 290 FAKTAAVSERIHEQVRDRQLEKEYVCRVVGEFPTEEVT 327
Score = 80 (33.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
LTGRTHQ+R L G PI+ D +Y AA
Sbjct: 372 LTGRTHQIRVHLQFLGHPILNDPIYNSAA 400
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 50/187 (26%), Positives = 85/187 (45%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCV 277
+I + H+ VL+KP+GT+V G + + RAL L H++D T G +
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGS-GLSFGVIE-GLRALRPEARFLELVHRLDRDTSGVL 151
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
++A+ + H ++REK ++K YLAL + + P+ ++ G + +
Sbjct: 152 LVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS-VQAPL--LKNILQSGERIVR 208
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLAACGAP 395
+ E K P T + +E+ R YA+ ++ +TGRTHQ+R G P
Sbjct: 209 VS-QEGK----PSET---RFKVEE-----R-YAFATLVRCSPVTGRTHQIRVHTQYAGHP 254
Query: 396 IVGDSMY 402
I D Y
Sbjct: 255 IAFDDRY 261
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 84 (34.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMP 404
+TGR+HQ+R + A G PI+GD +Y P
Sbjct: 164 ITGRSHQLRVHMLALGHPILGDRLYAP 190
Score = 75 (31.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
II + VVL+K +G SV G ++ R L T H++D T G ++
Sbjct: 19 IIYQDDDIVVLNKASGILSVPGRLPEHQDCLQNRVQRVLPTAT---IVHRLDMATSGIMI 75
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
+A + R+ ++K +K YLA
Sbjct: 76 MALNKPAHVAISRQFEQRKTQKSYLA 101
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 50/193 (25%), Positives = 91/193 (47%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
NS ++ + ++++KPAG SV G T ++ S + + + ++ H++D T G
Sbjct: 91 NS-VVYEDDDVLIINKPAGISVQGGT-KVKISISDIVDKIRDGES-MKIVHRLDKDTSGI 147
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP---VGIMTHYM--RPINIAPRLVSE 331
++LAR + + + ++V+K YLALT +P +G + H + +++ V++
Sbjct: 148 LMLARNARISRLIMHEFKNRRVEKKYLALTQG-IPKNDIGQINHSIIKNKRSLSLDKVND 206
Query: 332 GWYLCQL--EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
YL + KK+P Y I G ++K +TGR HQ+R L
Sbjct: 207 S-YLQEAVTSFSVLKKLP---------YGI---GL--------LELKPITGRKHQIRIHL 245
Query: 390 AACGAPIVGDSMY 402
+ G I+GD Y
Sbjct: 246 SHIGCSIIGDKKY 258
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 44/146 (30%), Positives = 68/146 (46%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R HQ+D T G + +A + +R ++++V K YLAL + +T I+
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHIQESRVT-----IS 115
Query: 324 IA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
A + +EG +C C+ P P T + +E G D + ++ LTG
Sbjct: 116 YAIGKNSTEGRTHTMCIEGTQGCEN-PKPSLT--ELVVLEH-GLYGGDPVSKVLLQPLTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAA 406
RTHQ+R +A G PIVGD Y A+
Sbjct: 172 RTHQLRVHCSALGHPIVGDLTYGQAS 197
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 87 (35.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
V +A +E G P+ +C ++ TGRTHQ+R +A G ++GD +Y +LS
Sbjct: 232 VTRARVVESFGQPAAVSLIDCWLE--TGRTHQIRVHMAHAGHGLLGDPVY--GGRRKLSP 287
Query: 413 PGLNP 417
L+P
Sbjct: 288 RALSP 292
Score = 76 (31.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 32/138 (23%), Positives = 60/138 (43%)
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRV-HVH 204
P TA + R+ + +T+ +V S+ G+ V + + R+ Q+ A T H+
Sbjct: 27 PETAALSRTRLARLITEGAV-----SVDGQVVTDPKA--RVVEGAQVAIALTEAEESHIA 79
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P+ P + + I+ + +V+ GT G + + C S G+ P
Sbjct: 80 PEAIPLVVVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALLAHCGDNLSGVGGVKRP-G 138
Query: 265 TTHQIDNCTEGCVVLART 282
H+ID T G +V+A++
Sbjct: 139 IVHRIDKDTSGLLVVAKS 156
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 89 (36.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 28/126 (22%), Positives = 52/126 (41%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNI 245
+ +D +++ +LR VH P +I+ + VV+DKP+ V
Sbjct: 105 VQDLDVVLKNNDFLRNTVHRHEPPVTAQ---PIQILVENDEVVVVDKPSSLPVH-PCGRF 160
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+ F L T H++D T G ++ A+T E ++RE++++K Y+
Sbjct: 161 RHNTVIFILGKEHNLKELHTIHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCR 220
Query: 306 TTAPLP 311
P
Sbjct: 221 VVGEFP 226
Score = 77 (32.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKE 424
TGRTHQ+R L G PIV D +Y A G GK +E
Sbjct: 277 TGRTHQIRVHLQYLGYPIVNDPIYNMEAWGPEKGKG-GKIGKTDEE 321
>UNIPROTKB|B4DDD1 [details] [associations]
symbol:RPUSD2 "cDNA FLJ57803, highly similar to Homo
sapiens RNA pseudouridylate synthase domain containing 2 (RPUSD2),
mRNA" species:9606 "Homo sapiens" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 UniGene:Hs.173311 HGNC:HGNC:24180
HOVERGEN:HBG103625 EMBL:AC091045 EMBL:AK293145 IPI:IPI00908891
SMR:B4DDD1 STRING:B4DDD1 Ensembl:ENST00000559271 UCSC:uc021sjh.1
Uniprot:B4DDD1
Length = 484
Score = 90 (36.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++A E VV+DKP+ V + F L H++D T G ++
Sbjct: 163 RLLAENEDVVVVDKPSSIPVH-PCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLM 221
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
A+T H ++R+++++K Y+ P +T
Sbjct: 222 FAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVT 259
Score = 76 (31.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
LTGRTHQ+R L G PI+ D +Y A
Sbjct: 304 LTGRTHQIRVHLQFLGHPILNDPIYNSVA 332
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 93 (37.8 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + + VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 217 KIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLL 275
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
RT E +IR ++V+K Y+ P GI+
Sbjct: 276 FGRTAEKARELELQIRTRQVQKEYVCRVEGRFPDGIV 312
Score = 72 (30.4 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
K LTGR HQ+R L G PI D +Y L G + G +++ S+
Sbjct: 356 KPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGITEEQLISN 408
Score = 41 (19.5 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 466 YEARSPWWRCKCNV 479
YE P W C N+
Sbjct: 529 YETELPEWACNSNI 542
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 40/143 (27%), Positives = 69/143 (48%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRP 321
R H++D T G ++ A+T + R + VKK YLA+ L G++ Y
Sbjct: 133 RVVHRLDKHTTGVLIFAKTLDAARELWRLFSNRLVKKSYLAIVIGELKEKKGVVDCY--- 189
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LT 379
IN +++ +G EVM+C + + + + + I + + I+L LT
Sbjct: 190 IN---KVLFKGE-----EVMQCNNIGNGEHAITQFHVI-------KKFKNTSLIELFPLT 234
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GR HQ+R+Q+A+ G P++ D Y
Sbjct: 235 GRKHQIRSQMASIGHPVLNDGKY 257
>UNIPROTKB|Q8IZ73 [details] [associations]
symbol:RPUSD2 "RNA pseudouridylate synthase
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 EMBL:AK055971 EMBL:BC007697
EMBL:BC016967 EMBL:U67934 IPI:IPI00150963 RefSeq:NP_689473.1
UniGene:Hs.173311 ProteinModelPortal:Q8IZ73 SMR:Q8IZ73
IntAct:Q8IZ73 STRING:Q8IZ73 PhosphoSite:Q8IZ73 DMDM:158563848
PaxDb:Q8IZ73 PeptideAtlas:Q8IZ73 PRIDE:Q8IZ73
Ensembl:ENST00000315616 GeneID:27079 KEGG:hsa:27079 UCSC:uc001zmd.1
CTD:27079 GeneCards:GC15P040861 HGNC:HGNC:24180 HPA:HPA042079
HPA:HPA042194 neXtProt:NX_Q8IZ73 PharmGKB:PA134866412
HOVERGEN:HBG103625 InParanoid:Q8IZ73 OMA:HLNEEPV OrthoDB:EOG4DV5KW
PhylomeDB:Q8IZ73 GenomeRNAi:27079 NextBio:49685 ArrayExpress:Q8IZ73
Bgee:Q8IZ73 CleanEx:HS_RPUSD2 Genevestigator:Q8IZ73 Uniprot:Q8IZ73
Length = 545
Score = 90 (36.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++A E VV+DKP+ V + F L H++D T G ++
Sbjct: 224 RLLAENEDVVVVDKPSSIPVH-PCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLM 282
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
A+T H ++R+++++K Y+ P +T
Sbjct: 283 FAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVT 320
Score = 76 (31.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
LTGRTHQ+R L G PI+ D +Y A
Sbjct: 365 LTGRTHQIRVHLQFLGHPILNDPIYNSVA 393
>UNIPROTKB|F1PK69 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AAEX03016068
Ensembl:ENSCAFT00000014582 Uniprot:F1PK69
Length = 552
Score = 90 (36.7 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++A E VV+DKP+ V + F L H++D T G ++
Sbjct: 231 RLLAENEDVVVVDKPSSIPVH-PCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLM 289
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
A+T H ++R+++++K Y+ P +T
Sbjct: 290 FAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVT 327
Score = 76 (31.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
LTGRTHQ+R L G PI+ D +Y A
Sbjct: 372 LTGRTHQIRVHLQFLGHPILNDPIYNSVA 400
>RGD|1306147 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain containing 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
RGD:1306147 GO:GO:0003723 EMBL:CH473949 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
CTD:27079 OMA:HLNEEPV OrthoDB:EOG4DV5KW IPI:IPI00914730
RefSeq:NP_001129317.1 RefSeq:XP_003749602.1 UniGene:Rn.23750
Ensembl:ENSRNOT00000014129 GeneID:100911166 GeneID:311326
KEGG:rno:100911166 KEGG:rno:311326 UCSC:RGD:1306147 NextBio:663325
Uniprot:D4ACD4
Length = 553
Score = 88 (36.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++A + VV+DKP+ V + F L H++D T G ++
Sbjct: 237 RLLAENDDVVVIDKPSSIPVH-PCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLM 295
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+T H ++R+++++K Y+ P
Sbjct: 296 FAKTAAVSEKIHEQVRDRQLEKEYVCRVAGEFP 328
Score = 78 (32.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 28/87 (32%), Positives = 37/87 (42%)
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYA 426
R +C+ LTGRTHQ+R L G PI+ D +Y A G K +E
Sbjct: 369 RSSVVQCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSTAWGPSRGQG-GHIPKTDEELL 425
Query: 427 SDDDKEMAVIEWISQHGM-EPSVAIGL 452
D E E +S + E +A GL
Sbjct: 426 RDLVAEHQAKESLSMLDLCEGDLAPGL 452
>ASPGD|ASPL0000068180 [details] [associations]
symbol:AN10936 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BN001304 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 OMA:GHPISND
EnsemblFungi:CADANIAT00000078 Uniprot:C8VCJ6
Length = 572
Score = 126 (49.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 49/195 (25%), Positives = 80/195 (41%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II T+ +V+DKPAG V T S G R +++D T G + +
Sbjct: 127 IIHETDDLLVIDKPAGVPVHSTGRYHYNSVMEILRIQNGGAYVPRPCNRLDRLTSGVMFV 186
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL----VSEGWYL 335
+T + K++E+ V+K Y+A P G++ ++++P++ V
Sbjct: 187 GKTAQGADRMTVKLKERTVQKEYVARVKGRFPDGVVVVDQPIMSVSPKVGLNRVRATGKE 246
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDC--GWPSRDYAYECK----IKL--LTGRTHQVRA 387
+ + P P T + E+ P Y E + + LTGRTHQ+R
Sbjct: 247 AKTKFRRLAYYPPPSPTTSTSDEGENARPATPPPSYVNESEGYSIVHCFPLTGRTHQIRV 306
Query: 388 QLAACGAPIVGDSMY 402
L G PI D +Y
Sbjct: 307 HLQFLGHPISNDPIY 321
Score = 38 (18.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 418 FGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWW 473
+ K + E S + ++ E + G+ + I L A S GE Y ++ P W
Sbjct: 433 YQKRKGERLSGEKCDVCGTELYTDPGVH-ELGIFLHAVAYSDAHGEWSYRSKMPSW 487
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 483 470 0.00098 118 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 624 (66 KB)
Total size of DFA: 331 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.61u 0.08s 37.69t Elapsed: 00:00:11
Total cpu time: 37.62u 0.08s 37.70t Elapsed: 00:00:11
Start: Tue May 21 09:01:21 2013 End: Tue May 21 09:01:32 2013