BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011530
(483 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255554955|ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542360|gb|EEF43902.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 476
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/482 (70%), Positives = 404/482 (83%), Gaps = 14/482 (2%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHA-SCHRNIYKSNVV-LSFSSSNRNFVCES 58
MSS+S +SIF RS PV++LRTLASTHA S HR+ K+ + S +S R F CES
Sbjct: 1 MSSLSLASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCES 60
Query: 59 WKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICR 118
K V T+T+ + G +Y RLLPCPS N PPR+EHLVV E GPVL+YIC+
Sbjct: 61 SKPEVAYTTNTSCVN--------GNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICK 112
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
L+LPPLFVADLI FGAV+YALVCP+PP TATPEQ+R+F++ T PSVL KRSSIKGKTVR
Sbjct: 113 ALDLPPLFVADLIDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVR 172
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
EAQKTFRITHVDQ +EAGTYLRVHVHPKRFPRCYDIDW SRIIAVT+ +VVLDKPAGTSV
Sbjct: 173 EAQKTFRITHVDQYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSV 232
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
GGT DNIEESCATFA+RALGLTTPL+TTHQIDNCTEGCVVLAR++EYCS+FH KIREKKV
Sbjct: 233 GGTADNIEESCATFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKV 292
Query: 299 KKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVG 354
KKLYLAL +P+PVG++ +YMRP+NIAPRL+SE GW+LCQLEV+EC+KVPWPDA +
Sbjct: 293 KKLYLALAASPVPVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIE 352
Query: 355 KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
+ YS+EDCGWPS+D+AYECKI LLTGRTHQ+RAQLAA GAP+VGDSMYMPAA+A++++PG
Sbjct: 353 EKYSVEDCGWPSKDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPG 412
Query: 415 LNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
LNPFGK +K+Y ++ D+ MAV EW++QHG EP VAIGLQAC ISWD+G+ Y+A SPWWR
Sbjct: 413 LNPFGKHRKQYTNESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472
Query: 475 CK 476
C+
Sbjct: 473 CR 474
>gi|224076324|ref|XP_002304926.1| predicted protein [Populus trichocarpa]
gi|222847890|gb|EEE85437.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/480 (71%), Positives = 399/480 (83%), Gaps = 16/480 (3%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
M+S++ +SIF+ + RS APV+LLRTLA T A ++ K +V S S + CES K
Sbjct: 1 MASLNLASIFSYSYRSFSAPVTLLRTLAFTRAY---SLNKKALVWC-SLSKKKLSCESLK 56
Query: 61 RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICREL 120
+ + T T+++ GYPEY RLLPCPS N PPR+EHLVVSE GPVL+YIC+ L
Sbjct: 57 QDIACTTATSSVN--------GYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKAL 108
Query: 121 NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREA 180
+LPPLFVADLIHFGAV+YALVCP+PP TATPEQ+RVF+EVT PSVL KR+SIKGKTVREA
Sbjct: 109 DLPPLFVADLIHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREA 168
Query: 181 QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG 240
QKTFRITHVDQ +EAG YLRVHVHPKRFPRCYDIDW SRII VTES VVLDKPAGTSVGG
Sbjct: 169 QKTFRITHVDQFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGG 228
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
TTDNIEESCATFA+RALGLT PLRTTHQIDNCTEGCVVLART+E CS+FH KIREK VKK
Sbjct: 229 TTDNIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKK 288
Query: 301 LYLALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKA 356
LY+AL +P+P+G++ HYMRPIN+APRLVSE GW+LCQLEVMECK+VPWPDA + +
Sbjct: 289 LYIALAASPVPIGVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEK 348
Query: 357 YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
Y ++DCGWPS+D+AYECKI LLTGRTHQ+RAQLAA GAP+VGDSMYMPAA+A++ SPG N
Sbjct: 349 YCVQDCGWPSKDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCN 408
Query: 417 PFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCK 476
PFGK +K+Y S+DDK +AV EW+ HG EP+VAIGLQAC ISWDDG+ Y A SPWWRC+
Sbjct: 409 PFGKYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWRCR 468
>gi|225444351|ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
vinifera]
gi|302144082|emb|CBI23187.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/474 (72%), Positives = 393/474 (82%), Gaps = 25/474 (5%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRN---IYKSNVVLSFSSSNRNFVCESWKRHV 63
SS++ +N RS G PV+L RTLAS++ R+ ++ SN N C
Sbjct: 16 SSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSN----------NPTC------- 58
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
T TA+ +A T S GYPEYHRLLPCPSQN PPRVEHLVVSEGG VL+YI + L+LP
Sbjct: 59 -TRELTASSDSANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLP 117
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
PLFVADLIHFGAVYYALVCP+PP +ATPEQ+R+FKEVT PSVL KR SIKGKT+REAQKT
Sbjct: 118 PLFVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKT 177
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FRIT V++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTD
Sbjct: 178 FRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 237
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
NIEESCATFA+RALGLTTPLRTTHQIDNCTEGCVVLART+EYCS+FH KIREKKVKKLY
Sbjct: 238 NIEESCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYR 297
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSI 359
AL AP+P+GI+THYMRP+NIAPRL+SE GWYLCQLEV+ECK+VPWP + + Y I
Sbjct: 298 ALAAAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCI 357
Query: 360 EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
ED GWP ++ A++CKI LLTGRTHQ+RAQLAACGAPIVGDSMYMPAAIA+++SPGLNPFG
Sbjct: 358 EDRGWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFG 417
Query: 420 KCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWW 473
K +K+Y +++D+E AV EWI+QHG EP VAIGLQAC ISWDDGE Y+A SPWW
Sbjct: 418 KYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471
>gi|449467613|ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/480 (67%), Positives = 384/480 (80%), Gaps = 18/480 (3%)
Query: 4 VSFSSIFTNNGRSLGAPV-SLLRTLA----STHASCHRNIYKSNVVLSFSSSNRNFVCES 58
++ + + T+ R+L + SLLRTLA S A+ R+ + S S + F C+S
Sbjct: 1 MNIALVATHGCRTLSSTSPSLLRTLARPRASLSAASSRDYFAPR--RSLGSKSSAFPCKS 58
Query: 59 WKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICR 118
+ TD + AT + GYP+YHRLLPCPS + PPRVEH+VV E GPV+EYIC+
Sbjct: 59 ------SITDVT-VKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICK 111
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
LNLPPL+VADLIHFGAVYYALVCP+PP TATPEQ+R+FK+ T+PS L R SIKGKTVR
Sbjct: 112 SLNLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVR 171
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
EAQKTFRITHVD+ VE GTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSV
Sbjct: 172 EAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV 231
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
GGTTDNIEESCATFA+RALGLT+PL TTHQIDNCTEGCV+ ART+EYCSIFH KIREKKV
Sbjct: 232 GGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKV 291
Query: 299 KKLYLALTTAPLPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPDATVG 354
KLYLAL+ AP+P+GI+THYMRPINIAPRLVS +GW +CQLEV+EC++V WPDA +
Sbjct: 292 MKLYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIE 351
Query: 355 KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
Y +EDCGWPS+ AYEC+I LLTGRTHQ+RAQLA CGAP+VGDSMYMPA +A++ SPG
Sbjct: 352 AKYRVEDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPG 411
Query: 415 LNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
LNPFGKC+KEY +++DKE AV EW + HG EP+VAIGLQA ISWD E Y A +PWWR
Sbjct: 412 LNPFGKCKKEYTNEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWR 471
>gi|356546416|ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
max]
Length = 473
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/484 (66%), Positives = 380/484 (78%), Gaps = 30/484 (6%)
Query: 7 SSIFTNNGRSLGAP-----VSLLRTLASTHASCH------RNIYKSNVVLSFSSSNRNFV 55
S +F R L P + + R S+H + H R+ + SN L+ +
Sbjct: 5 SMLFAGGCRILAVPAAARAIRIPRAALSSHHNKHAPSWGCRSSHNSNTALAGEAE----- 59
Query: 56 CESWKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEY 115
F+ TD + A T SS +P+Y RLLPCPS PPR+EHLV+SEGGPVLE
Sbjct: 60 --------FSTTDAGNLTA--TSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLEL 109
Query: 116 ICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGK 175
IC+ L+LPPL+V+DLI FGAVYYALVCP+PP AT EQ+RVFKEVT+PSVL KR+SIKGK
Sbjct: 110 ICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGK 169
Query: 176 TVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
TVREAQKTFR+THVDQ VE GTYLRVHVHPKRFPR Y+IDW SRIIAV ES+VVLDKPAG
Sbjct: 170 TVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAG 229
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
TSVGGTTDNIEESCATFA+RALG+TTPL TTHQIDNCTEGCVVLART++YCSIFH KIRE
Sbjct: 230 TSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIRE 289
Query: 296 KKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDA 351
KKVKKLYLAL +PLP GI+THYMRPIN+APRL+SE GW+LCQLEV+EC+K+PWP
Sbjct: 290 KKVKKLYLALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTT 349
Query: 352 TVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
+ Y +EDCGWPS+DYAYECKI LLTG+THQ+RAQ AA AP++GDSMYMPAAIA +S
Sbjct: 350 AIQDKYCVEDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVS 409
Query: 412 SPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSP 471
+PGLNPFGK +K+++S+ +KE AV+ W++QHG EPSVAIGLQAC ISWDD E YEA P
Sbjct: 410 NPGLNPFGKYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLP 469
Query: 472 WWRC 475
WWRC
Sbjct: 470 WWRC 473
>gi|356557901|ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
max]
Length = 473
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/476 (68%), Positives = 379/476 (79%), Gaps = 14/476 (2%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYK---SNVVLSFSSSNRNFVCESWKRHV 63
S +F+ + RSL P + R + + A+ N K S S +SN E+
Sbjct: 5 SMLFSGSCRSLAMPAAA-RAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEA----E 59
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
F TD + A T SS + +Y RLLPCPS PPR+EHLVVSEGGPVLE+IC+ L+LP
Sbjct: 60 FLTTDAGILNA--TSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLP 117
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
PL+V+DLI FGAVYYALVCP+PP AT EQ+RVFKEVT+PSVL KR+SIKGKTVREAQKT
Sbjct: 118 PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 177
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FR+THVDQ VE GTYLRVHVHPKR PRCY+IDW SRII V ES+VVLDKPAGTSVGGTTD
Sbjct: 178 FRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTD 237
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
NIEESCATFA+RALG+TTPL TTHQIDNCTEGCVVLART+EYCS+FH KIREKKVKK YL
Sbjct: 238 NIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYL 297
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSI 359
AL PLP GI+THYMRPI++APRL+SE GW+LCQLEV+EC+KVPWP + Y I
Sbjct: 298 ALAAFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCI 357
Query: 360 EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
EDCGWPS+DYAYECKI LLTG+THQ+RAQ AA AP++GDSMYMPAAIA +S+PGLNPFG
Sbjct: 358 EDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFG 417
Query: 420 KCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRC 475
K +K+++S+ +KE AV+ WI+QHG EPSVAIGLQAC ISWDD E YEA SPWWRC
Sbjct: 418 KYKKDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWRC 473
>gi|449488468|ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
chloroplastic-like [Cucumis sativus]
Length = 475
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/480 (67%), Positives = 382/480 (79%), Gaps = 18/480 (3%)
Query: 4 VSFSSIFTNNGRSLGAPV-SLLRTLA----STHASCHRNIYKSNVVLSFSSSNRNFVCES 58
++ + + T+ R+L + SLLRTLA S A+ R+ + S S + F C+S
Sbjct: 1 MNIALVATHGCRTLSSTSPSLLRTLARPRASLSAASSRDYFAPRC--SLGSKSSAFPCKS 58
Query: 59 WKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICR 118
+ TD + AT + GYP+YHRLLPCPS + PPRVEH+VV E GPV+EYIC+
Sbjct: 59 ------SITDVT-VKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICK 111
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
LNLPPL+VADLIHFGAVYYALVCP+PP TATPEQ+R+FK T+PS L R SIKGKTVR
Sbjct: 112 SLNLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVR 171
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
EAQKTFRITHVD+ VE GTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSV
Sbjct: 172 EAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV 231
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
GGTTDNIEESCATFA+RALGLT+PL TTHQIDNCTEGCV+ ART+EYCSIFH KIREKKV
Sbjct: 232 GGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKV 291
Query: 299 KKLYLALTTAPLPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPDATVG 354
KLYLAL+ AP+P+GI+THYMRPINIAPRLVS +GW +CQLEV+EC++V WPDA
Sbjct: 292 MKLYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADTE 351
Query: 355 KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
Y +EDCGWPS+ AYEC+I LLTGRTHQ+RAQLA CGAP+VGDSMYMPA +A++ SPG
Sbjct: 352 AKYRVEDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPG 411
Query: 415 LNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
LNPFGKC+KEY +++DKE +V EW + HG EP+VAIGLQA ISWD E Y A +PWWR
Sbjct: 412 LNPFGKCKKEYTNEEDKETSVAEWSALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWR 471
>gi|449454720|ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/463 (68%), Positives = 373/463 (80%), Gaps = 12/463 (2%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
ALGLT+PL TTHQIDNCTEGCV+LART+EYCSIFHRKIREKKV KLYLAL PLP GIM
Sbjct: 249 ALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLPKGIM 308
Query: 316 THYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY 371
THYMRP N+APRLVS +GW LCQLEV+EC++V WPDA + YSIEDCGWPS+ A+
Sbjct: 309 THYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSKKKAF 368
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDK 431
ECKI LLTGRTHQ+RAQLA CGAP+VGDSMYMPA +A++++PGLNPFGKC+KEY S++DK
Sbjct: 369 ECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMANPGLNPFGKCKKEYTSEEDK 428
Query: 432 EMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
E AV EWI+ HG EP+VAIGLQA ISWD E Y A +PWWR
Sbjct: 429 ENAVAEWIALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWR 471
>gi|449488373|ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/463 (68%), Positives = 373/463 (80%), Gaps = 12/463 (2%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
ALGLT+PL TTHQIDNCTEGCV+LART+EYCSIFHRKIREKKV KLYLAL PLP GIM
Sbjct: 249 ALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLPKGIM 308
Query: 316 THYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY 371
THYMRP N+APRLVS +GW LCQLEV+EC++V WPDA + YSIEDCGWPS+ A+
Sbjct: 309 THYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSKKKAF 368
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDK 431
ECKI LLTGRTHQ+R QLA GAP+VGDS+YMPAA+A++++PGLNPFGKC+KEY S++DK
Sbjct: 369 ECKINLLTGRTHQIRVQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDK 428
Query: 432 EMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
E AV EWI+ HG EP+VAIGLQA ISWD GE Y A +PWWR
Sbjct: 429 ENAVAEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAGTPWWR 471
>gi|255554953|ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542359|gb|EEF43901.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 395
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/393 (75%), Positives = 344/393 (87%), Gaps = 4/393 (1%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPSQN PPRVEHLVV E GPVL+YIC+ L+LPPLFVADLIHFGAV+YALVCP+P
Sbjct: 3 YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TATPEQ+R+F+E T PSVL KR+SIKGKTVREAQKTFR++ V Q +E GTYLRV+VHP
Sbjct: 63 PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+RFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTT+NIEE+CATFA+RALGLT PL+T
Sbjct: 123 RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
THQIDNCTEGCVVLART EYC +FH KIRE KVKKLYLAL P+PVG++THYMRP NI
Sbjct: 183 THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242
Query: 326 PRLVS----EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
PRLVS EGWYLCQLEV+EC+KVPWPD + YS+EDCGWPS+D+AYECKI LLTGR
Sbjct: 243 PRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPSKDFAYECKINLLTGR 302
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQ 441
THQ+RAQLAACGAP+VGDSMYMPAAIA++++PG+NPFGK +K+Y ++D+ M V EW+ +
Sbjct: 303 THQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVAEWVER 362
Query: 442 HGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
HG EPS+AIGLQAC ISW D + Y+A PWWR
Sbjct: 363 HGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395
>gi|15234586|ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
gi|75212600|sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|4455285|emb|CAB36821.1| hypothetical protein [Arabidopsis thaliana]
gi|7268974|emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana]
gi|23296381|gb|AAN13057.1| unknown protein [Arabidopsis thaliana]
gi|110741616|dbj|BAE98756.1| hypothetical protein [Arabidopsis thaliana]
gi|332659101|gb|AEE84501.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
Length = 472
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/477 (65%), Positives = 377/477 (79%), Gaps = 16/477 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNV-VLSFSSSNRNFVCESWKRHVFT 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTT--PLFRSNKHSPRFISSPKRFTCLS-----LL 55
Query: 66 HTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
TD+ ++ S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 56 KTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
IEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY A
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 295
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIE 360
L APLP+GI++HYMRP N+APRLV+E GW+LCQLEV+ECKK+PWPDA K + IE
Sbjct: 296 LAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIE 355
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
DCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P NP+GK
Sbjct: 356 DCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGK 415
Query: 421 CQKEYASDDD-KEMAVIEWISQHGMEPSVAIGLQACHISW--DDGECCYEARSPWWR 474
+K Y +++ KE AV EWI +HG EP V IGLQAC ISW DDGE YEA +PWWR
Sbjct: 416 AKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472
>gi|297799888|ref|XP_002867828.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297313664|gb|EFH44087.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 476
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/479 (65%), Positives = 376/479 (78%), Gaps = 16/479 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASC---HRNIYKSNVVLSFSSSNRNFVCESWKRHV 63
S T R+L APVSLLRTLAST + N Y+ + F SS + F C S +
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTCITTTLFRTNKYQYKIPPRFISSPKRFTCLSLHK-- 60
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNL 122
TD+ ++ S+ GYPEY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+L
Sbjct: 61 ---TDSQNQTTLSSSSTSGYPEYNRLMPCPAHNLPPRIEHMVVLEDDVLVSEFISKQLDL 117
Query: 123 PPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQK 182
PPL+V+DLI FGAV+YALVCPKPP TATPEQ+ +F+EVT PSVL KRSSIKGKTVREAQK
Sbjct: 118 PPLYVSDLIRFGAVHYALVCPKPPPTATPEQIELFEEVTCPSVLKKRSSIKGKTVREAQK 177
Query: 183 TFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
TFR+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTT
Sbjct: 178 TFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTT 237
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
DNIEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY
Sbjct: 238 DNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLY 297
Query: 303 LALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYS 358
AL APLP GI++HYMRP N+APRLVSE GW+LCQLEV+ECKK+PWPDA K +
Sbjct: 298 RALAAAPLPTGIISHYMRPKNMAPRLVSEDSIKGWHLCQLEVLECKKIPWPDAATEKKHD 357
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
IEDCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P N +
Sbjct: 358 IEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMVNPDTNLY 417
Query: 419 GKCQKEYA-SDDDKEMAVIEWISQHGMEPSVAIGLQACHISW--DDGECCYEARSPWWR 474
GK +K Y ++DK+ AV EWI +HG EP V IGLQAC ISW DDGE YEA +PWWR
Sbjct: 418 GKAKKHYTMEENDKDTAVAEWIDRHGKEPRVGIGLQACQISWYDDDGEHFYEAGTPWWR 476
>gi|357511989|ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
gi|355501298|gb|AES82501.1| RNA pseudourine synthase [Medicago truncatula]
Length = 462
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/423 (69%), Positives = 340/423 (80%), Gaps = 25/423 (5%)
Query: 67 TDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLF 126
D+ AI+ T YP+Y RLLPCPS PPR+EHLVVS+ GPVL+YIC+ L+LP LF
Sbjct: 46 NDSNAISETVT-----YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLF 100
Query: 127 VADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRI 186
VADLI FGAVY+ALV P+PP TAT EQ+R+F++VT+P VL KRSS+KGKT+REAQKTFR+
Sbjct: 101 VADLIQFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRV 160
Query: 187 THVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
T +Q VE GTYLRVHVHPKRFPRCY+IDW SRIIAV ES+VVLDKPAGTSVG TT NIE
Sbjct: 161 TDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIE 220
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
ESC TFA+RALGLTTPL TTHQIDNCTEGCVVLAR +EYCS+FH KIREKKVKK+YLAL
Sbjct: 221 ESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALA 280
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSE----------------GWYLCQLEVMECKKVPWPD 350
+PLP+GI+ HYMRP N APRL+SE GW++CQLEVM+C+K+PWP
Sbjct: 281 ASPLPIGIIKHYMRPTNTAPRLISEGNSTQIGMLCKDYCIKGWHICQLEVMDCRKIPWPA 340
Query: 351 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL 410
V Y CGWPS+DYAYECKI LLTGRTHQ+RAQ AAC API+GD+MYMPAAIA++
Sbjct: 341 IVVQDEY----CGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEM 396
Query: 411 SSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARS 470
+PGLNPFGK K+++S+ +K+ AVI WI+QHG EPSVAIGLQAC ISWDD E Y A
Sbjct: 397 INPGLNPFGKYNKDFSSESEKKTAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGL 456
Query: 471 PWW 473
PWW
Sbjct: 457 PWW 459
>gi|226724674|sp|A3BN26.1|PUS6_ORYSJ RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|125601389|gb|EAZ40965.1| hypothetical protein OsJ_25447 [Oryza sativa Japonica Group]
Length = 477
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/403 (65%), Positives = 322/403 (79%), Gaps = 6/403 (1%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
GL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALTTAP+ GI+TH
Sbjct: 246 GLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITH 305
Query: 318 YMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
YMRPIN APRLVSE GW++CQ+E+++CKKVPWP + + K + +++CGWP ++ AYEC
Sbjct: 306 YMRPINRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWPQQEAAYEC 365
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEM 433
KI LLTG+THQ+RAQLAA G PIVGDS YM AA+A + +P +NPFG+ + Y S+D+K
Sbjct: 366 KINLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNYDSEDEKAA 425
Query: 434 AVIEWISQHGMEPSVAIGLQACHISWD-DGE-CCYEARSPWWR 474
AV WIS HG EP IGLQA ISWD +GE Y+A PWWR
Sbjct: 426 AVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWWR 468
>gi|242051172|ref|XP_002463330.1| hypothetical protein SORBIDRAFT_02g041930 [Sorghum bicolor]
gi|241926707|gb|EER99851.1| hypothetical protein SORBIDRAFT_02g041930 [Sorghum bicolor]
Length = 480
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/399 (64%), Positives = 319/399 (79%), Gaps = 8/399 (2%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 74 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFISRSLGLPPLYAADLIKFGAVYYALVA 133
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE ++F+EVT+PS+L +R+SIKGKTVREAQKTFR+T DQ +EAGTYLRVH
Sbjct: 134 PQPPPYASPEHFKIFREVTEPSILRRRASIKGKTVREAQKTFRVTDPDQRLEAGTYLRVH 193
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY+IDW SR+IAV + +VVLDKPA TSVGG TDNIEESCA F SRALG+ TP
Sbjct: 194 VHPKRFPRCYEIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAVFTSRALGMETP 253
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L TTHQIDNC+EGCVVL++T+E+CS+FH IREK+VKKLYLALTTAP+ G +THYMRP+
Sbjct: 254 LLTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTAPVSTGTITHYMRPV 313
Query: 323 NIAPRLVSEG----WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
N APRLVSE W+LCQ+EV++C+KVPWP +++ K +++ CGWP ++ AYECKI LL
Sbjct: 314 NRAPRLVSEDCIERWHLCQMEVLDCRKVPWPSSSIRKIHNVNGCGWPQQEAAYECKINLL 373
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 438
TG+THQ+RAQLAA GAPI+GDS YM AA+A +++P +NPFG+ + Y S+++KE A+ W
Sbjct: 374 TGKTHQIRAQLAAIGAPIIGDSAYMTAAMAAMANPNINPFGREKLSYNSEEEKEAAIEAW 433
Query: 439 ISQHGMEPSVAIGLQACHISWDDGEC---CYEARSPWWR 474
I+ HG EP IGLQA ISWD EC Y+A PWWR
Sbjct: 434 IASHGKEPKSVIGLQASEISWDH-ECKHHSYKAGVPWWR 471
>gi|414591093|tpg|DAA41664.1| TPA: hypothetical protein ZEAMMB73_582506 [Zea mays]
Length = 474
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/397 (65%), Positives = 318/397 (80%), Gaps = 6/397 (1%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 72 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLIEFGAVYYALVA 131
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T +Q +EAGTYLRVH
Sbjct: 132 PQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 191
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY IDW SR+IAV + +VVLDKPA TSVGG TDNIEESCA F SRALGL TP
Sbjct: 192 VHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAVFTSRALGLETP 251
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L TTHQIDNC+EGCVVL++T+E+CS+FH IREK+VKKLYLALTTAP+ G +THYMRP+
Sbjct: 252 LLTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTAPVSTGTITHYMRPV 311
Query: 323 NIAPRLVSEG----WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
N APRLVSE W+LCQ+EV++C KVPWP +++ KAY++ CGWP ++ AYECKI LL
Sbjct: 312 NRAPRLVSEDCIERWHLCQMEVLDCSKVPWPSSSIRKAYNVNGCGWPQQEAAYECKINLL 371
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 438
TG+THQ+RAQLAA GAPI+GDS YM AA+A +++P +NPFG+ + Y S+++KE AV W
Sbjct: 372 TGKTHQIRAQLAAIGAPIIGDSAYMTAAMAAMANPSINPFGRERLSYNSEEEKEAAVEAW 431
Query: 439 ISQHGMEPSVAIGLQACHISWD-DGE-CCYEARSPWW 473
I+ HG EP IGLQA ISWD +G+ Y+A PWW
Sbjct: 432 IASHGKEPKSVIGLQASEISWDHEGKHHSYKAGVPWW 468
>gi|357116152|ref|XP_003559847.1| PREDICTED: uncharacterized protein LOC100824239 [Brachypodium
distachyon]
Length = 986
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/398 (64%), Positives = 318/398 (79%), Gaps = 6/398 (1%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y R+LPCP+Q+ PPR+EHLV E ++I R L LPPL+VADLI FGAVYYALV
Sbjct: 580 YPAYDRILPCPAQDDPPRIEHLVAREDEAAGDFISRSLGLPPLYVADLIKFGAVYYALVA 639
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A PE +R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T Q +EAGTYLRVH
Sbjct: 640 PQPPPYAAPEHVRIFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPGQHLEAGTYLRVH 699
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY IDW SR+IAVT+++VVL+KPA TSVGG TDNIEESC F SRALG+ +P
Sbjct: 700 VHPKRFPRCYQIDWKSRVIAVTDNYVVLNKPAATSVGGATDNIEESCVVFTSRALGVDSP 759
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L TTHQIDNC+EGCVVL++T+E+CS+FH IREK+VKKLYLALTT P+ GI+THYMRP+
Sbjct: 760 LMTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTKPVSPGIITHYMRPL 819
Query: 323 NIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
N APRLVSE GW+LCQ+E+++C KVPWP + K +++++CGWP ++ AYECKI L+
Sbjct: 820 NRAPRLVSEDHIGGWHLCQMEILDCTKVPWPKPLITKVHNVDNCGWPRQEAAYECKINLM 879
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 438
TG+THQ+RAQLAA GAPI+GDS YM AIA +++P +NP+G+ Y S+++K AV W
Sbjct: 880 TGKTHQIRAQLAAIGAPIIGDSAYMTGAIAAMANPSINPYGRESLNYNSEEEKAAAVEAW 939
Query: 439 ISQHGMEPSVAIGLQACHISWD-DGE-CCYEARSPWWR 474
++ HG EP IGLQA ISWD +GE Y+A PWWR
Sbjct: 940 VACHGKEPKSVIGLQASEISWDHEGEHHYYKAGVPWWR 977
>gi|147833193|emb|CAN68642.1| hypothetical protein VITISV_030809 [Vitis vinifera]
Length = 400
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 272/474 (57%), Positives = 317/474 (66%), Gaps = 97/474 (20%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRN---IYKSNVVLSFSSSNRNFVCESWKRHV 63
SS++ +N RS G PV+L RTLAS++ R+ ++ SN N C
Sbjct: 16 SSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSN----------NPTC------- 58
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
T TA+ +A T S GYPEYHRLLPCPSQN PPRVEHLVVSEGG
Sbjct: 59 -TRELTASSDSANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGG------------- 104
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
FVADLIHFGAVYYALVCP+PP +ATPEQ+R+FKEVT PSVL KR SIKGKT+REAQKT
Sbjct: 105 --FVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKT 162
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FRIT V++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAV
Sbjct: 163 FRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAV-------------------- 202
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
TE VVL + EKKVKKLY
Sbjct: 203 -----------------------------TESYVVLDKPA--------GTSEKKVKKLYR 225
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSI 359
AL AP+P+GI+THYMRP+NIAPRL+SE GWYLCQLEV+ECK+VPWP + + Y I
Sbjct: 226 ALAAAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCI 285
Query: 360 EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
ED GWP ++ A++CKI LLTGRTHQ+RAQLAACGAPIVGDSMYMPAAIA+++SPGLNPFG
Sbjct: 286 EDRGWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFG 345
Query: 420 KCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWW 473
K +K+Y +++D+E AV EWI+QHG EP VAIGLQAC ISWDDGE Y+A SPWW
Sbjct: 346 KYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 399
>gi|115473865|ref|NP_001060531.1| Os07g0660400 [Oryza sativa Japonica Group]
gi|34395182|dbj|BAC83571.1| unknown protein [Oryza sativa Japonica Group]
gi|113612067|dbj|BAF22445.1| Os07g0660400 [Oryza sativa Japonica Group]
Length = 400
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/351 (67%), Positives = 285/351 (81%), Gaps = 6/351 (1%)
Query: 130 LIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189
LI FGAVYYALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T
Sbjct: 41 LIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDP 100
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
+Q +EAGTYLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC
Sbjct: 101 NQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESC 160
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
F SRALGL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALTTAP
Sbjct: 161 VVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAP 220
Query: 310 LPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWP 365
+ GI+THYMRPIN APRLVSE GW++CQ+E+++CKKVPWP + + K + +++CGWP
Sbjct: 221 VSTGIITHYMRPINRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWP 280
Query: 366 SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEY 425
++ AYECKI LLTG+THQ+RAQLAA G PIVGDS YM AA+A + +P +NPFG+ + Y
Sbjct: 281 QQEAAYECKINLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNY 340
Query: 426 ASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWD-DGE-CCYEARSPWWR 474
S+D+K AV WIS HG EP IGLQA ISWD +GE Y+A PWWR
Sbjct: 341 DSEDEKAAAVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWWR 391
>gi|168054605|ref|XP_001779721.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668919|gb|EDQ55517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 401
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/395 (52%), Positives = 273/395 (69%), Gaps = 7/395 (1%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RL+PCP+ + P RVEHL++ + G +++ IC EL+LPPL+V DLI FGAV+YAL CP P
Sbjct: 8 YDRLMPCPNYSLPARVEHLLIEKDGNIVDIICEELSLPPLYVVDLISFGAVFYALECPTP 67
Query: 146 PLTATPEQMRVFKEVTD--PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203
P A+PEQ+ ++ S +R S+KGKT++EAQKTFRI + +E+GTYLRVHV
Sbjct: 68 PPHASPEQLELYNRQVKLRASRKKERLSLKGKTLKEAQKTFRIASPSEYIESGTYLRVHV 127
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
HPKR PR Y++DW SR+IA T+S VV+DKPAG SVGGT DN+EE CATF SRAL L PL
Sbjct: 128 HPKRGPRVYEVDWLSRVIAETDSFVVVDKPAGVSVGGTVDNLEEMCATFVSRALKLKKPL 187
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
THQID CTEGCVV A+T+ + + FH +RE+KV+K Y AL AP+ G HYMR
Sbjct: 188 ILTHQIDTCTEGCVVFAKTKAFSTHFHMLLRERKVRKEYTALAAAPVAPGHHVHYMRSDR 247
Query: 324 IAPRLVSEG----WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
APR+VS W C+L V+ C++V WP ++V K + I CGW SR++AYEC ++LLT
Sbjct: 248 YAPRMVSNNDYSDWMNCELNVLGCRQVKWPSSSVEKQFRIAHCGWESREHAYECNVRLLT 307
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWI 439
GRTHQ+R Q AA AP+VGDS+YMP+ +A+ SP ++PF + + + A+ W
Sbjct: 308 GRTHQIRVQFAALDAPLVGDSVYMPSVVARKKSPEVDPF-RAESMIQDEGSWNSAIENWR 366
Query: 440 SQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 474
HG+EP +GLQA ISW+ + ++A PWWR
Sbjct: 367 DLHGLEPVCGLGLQASVISWEGEKQVFKAGRPWWR 401
>gi|302796789|ref|XP_002980156.1| hypothetical protein SELMODRAFT_112010 [Selaginella moellendorffii]
gi|300152383|gb|EFJ19026.1| hypothetical protein SELMODRAFT_112010 [Selaginella moellendorffii]
Length = 415
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/406 (51%), Positives = 277/406 (68%), Gaps = 23/406 (5%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPS PR+EHL+V + G VL + L LP +VADL+ FGAV++AL CPKP
Sbjct: 1 YKRLLPCPSTQLGPRIEHLLVKKKGTVLSIVSEVLKLPSEYVADLMSFGAVHHALRCPKP 60
Query: 146 PLTATPEQMRVFKEVTDPS--VLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203
PL TP+Q+++FK+ + VL + S + EA+K R+T + E G+Y+RVHV
Sbjct: 61 PLNLTPQQVQLFKKASPKKWPVLDRVSLV------EARKPERVTDPNHYAEPGSYIRVHV 114
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
HPKRFPRCY++DW SRIIA ES VVL+KPAG SVGG+ DN+EE C+TFA+RAL L PL
Sbjct: 115 HPKRFPRCYEVDWRSRIIANEESFVVLNKPAGVSVGGSVDNVEEICSTFATRALNLEQPL 174
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
TTHQ+DNCTEGC++LA+ E+ S FHR ++E KV+K YLAL AP+P+G HYMR
Sbjct: 175 VTTHQLDNCTEGCLLLAKNNEFASRFHRLLKENKVEKFYLALAAAPVPLGKTAHYMRSDK 234
Query: 324 IAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
PR++S GW LC + V+ECK+VPWP Y ++ CGW +AYEC++KLLT
Sbjct: 235 YPPRIMSNNERLGWQLCVMHVLECKQVPWPSEAALSEYQVQPCGWTKSKFAYECRVKLLT 294
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD-------KE 432
G THQ+RAQ +A G+P++GDS+YMPAA A+L +P L+PF +K+ +D++ E
Sbjct: 295 GLTHQLRAQFSALGSPLIGDSLYMPAAAARLENPELDPFLDTRKKEIADEEAGIEKSPAE 354
Query: 433 MAVIE--WISQHGMEPSVAIGLQACHISW-DDGECC-YEARSPWWR 474
+E WIS HG EP + IGLQ+C I W D+GE + A PWWR
Sbjct: 355 SKQLEKKWISLHGSEPLLGIGLQSCEIGWKDEGEVLRFRAGKPWWR 400
>gi|302822493|ref|XP_002992904.1| hypothetical protein SELMODRAFT_136149 [Selaginella moellendorffii]
gi|300139249|gb|EFJ05993.1| hypothetical protein SELMODRAFT_136149 [Selaginella moellendorffii]
Length = 415
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/406 (51%), Positives = 277/406 (68%), Gaps = 23/406 (5%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPS PR+EHL+V + G VL + L LP +VADL+ FGAV++AL CPKP
Sbjct: 1 YKRLLPCPSTQLGPRIEHLLVKKKGTVLSIVSEVLKLPSEYVADLMSFGAVHHALRCPKP 60
Query: 146 PLTATPEQMRVFKEVTDPS--VLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203
PL TP+Q+++FK+ + VL + S + EA+K R+T + E G+Y+RVHV
Sbjct: 61 PLNLTPQQVQLFKKASPKKWPVLDRVSLV------EARKPERVTDPNHYAEPGSYIRVHV 114
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
HPKRFPRCY++DW SRIIA ES VVL+KPAG SVGG+ DN+EE C+TFA+RAL L PL
Sbjct: 115 HPKRFPRCYEVDWRSRIIANEESFVVLNKPAGVSVGGSVDNVEEICSTFATRALNLEQPL 174
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
TTHQ+DNCTEGC++LA+ E+ S FHR ++E KV+K YLAL AP+P+G HYMR
Sbjct: 175 VTTHQLDNCTEGCLLLAKNNEFASRFHRFLKENKVEKFYLALAAAPVPLGKTAHYMRSDK 234
Query: 324 IAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
PR++S GW LC + V+ECK+VPWP Y ++ CGW +AYEC++KLLT
Sbjct: 235 YPPRIMSNNERLGWQLCVMHVLECKQVPWPSEAALSEYQVQPCGWTKSKFAYECRVKLLT 294
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD-------KE 432
G THQ+RAQ +A G+P++GDS+YMPAA A+L +P L+PF +K+ +D++ E
Sbjct: 295 GLTHQLRAQFSALGSPLIGDSLYMPAAAARLENPELDPFLDTRKKEIADEEAGIEKSPAE 354
Query: 433 MAVIE--WISQHGMEPSVAIGLQACHISW-DDGECC-YEARSPWWR 474
+E WIS HG EP + IGLQ+C I W D+GE + A PWWR
Sbjct: 355 SKQLEKKWISLHGSEPLLGIGLQSCEIGWKDEGEVLRFRAGKPWWR 400
>gi|302796533|ref|XP_002980028.1| hypothetical protein SELMODRAFT_111763 [Selaginella moellendorffii]
gi|300152255|gb|EFJ18898.1| hypothetical protein SELMODRAFT_111763 [Selaginella moellendorffii]
Length = 428
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/435 (45%), Positives = 272/435 (62%), Gaps = 55/435 (12%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCP + P R+EHL V + G V++Y+C+ L+LP L+V DLI FGAVY+AL C +P
Sbjct: 1 YDRLLPCPGDDLPVRIEHLFVEKNGNVVDYLCQALSLPSLYVNDLIEFGAVYHALRCSEP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TA E M +K ++ +KG +V+E+QK RI + VEAG+Y+RVHVHP
Sbjct: 61 PETAPKEHMEFYKR----ALAMDLPRVKGMSVQESQKARRIVSKHEEVEAGSYMRVHVHP 116
Query: 206 KRFPR---------------------CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+RFPR CY++DW SRI+A + VVLDKPAG SVGG+ DN
Sbjct: 117 RRFPRQETLAGCFFSLVYTRVFFVVRCYEVDWKSRILAENDLFVVLDKPAGVSVGGSVDN 176
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+EESC TFASRALG+ PL THQIDNCTEGCVVLA+ +++ S F+R +R +KV K YL
Sbjct: 177 LEESCVTFASRALGMAFPLLVTHQIDNCTEGCVVLAKDKDFVSNFNRLLRTRKVDKRYLV 236
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPDATVGKAYSIE 360
L +P+P+GI++HYMRP + AP L+S +GW+LC +EV++C +V WP + +
Sbjct: 237 LAASPVPLGIVSHYMRPDHFAPHLLSQDKRQGWHLCSMEVLQCHQVEWPSEARLRENGVS 296
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
+C +AYEC++KLLTG+THQVRAQ AA GAPI+GD++Y+PAAIA+ + ++P +
Sbjct: 297 NCELEHDGHAYECEVKLLTGKTHQVRAQFAALGAPILGDTIYIPAAIARRQNRAIDPVLR 356
Query: 421 CQKEYASDDDKEMAVIEWISQHGME-PSVAIGLQACHISW-------------------- 459
+++ + ++ WI HG P +AIGLQA ISW
Sbjct: 357 DDGQWSEEREE-----RWILHHGSSAPKLAIGLQASSISWIGDTTIDILLVDEEPIDRES 411
Query: 460 DDGECCYEARSPWWR 474
+ A SPWWR
Sbjct: 412 SQSNFSFHASSPWWR 426
>gi|302822543|ref|XP_002992929.1| hypothetical protein SELMODRAFT_136180 [Selaginella moellendorffii]
gi|300139274|gb|EFJ06018.1| hypothetical protein SELMODRAFT_136180 [Selaginella moellendorffii]
Length = 428
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/435 (45%), Positives = 271/435 (62%), Gaps = 55/435 (12%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCP + P R+EHL V + G V++Y+C+ L+LP L+V DLI FGAVY+AL C +P
Sbjct: 1 YDRLLPCPGDDLPVRIEHLFVEKNGNVVDYLCQALSLPSLYVNDLIEFGAVYHALRCSEP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TA E M +K ++ +KG +V+E+QK RI + VEAG+Y+RVHVHP
Sbjct: 61 PETAPKEHMEFYKR----ALAMDLPRVKGMSVQESQKARRIVSKHEEVEAGSYMRVHVHP 116
Query: 206 KRFPR---------------------CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+RFPR CY++DW SRI+A + VVLDKPAG SVGG+ DN
Sbjct: 117 RRFPRQETLAGCFFSLVYTRVFFVVRCYEVDWKSRILAENDLFVVLDKPAGVSVGGSVDN 176
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+EESC TFASRALG+ PL THQIDNCTEGCVVLA+ +++ S F+R +R +KV K YL
Sbjct: 177 LEESCVTFASRALGMAFPLLVTHQIDNCTEGCVVLAKDKDFVSNFNRLLRTRKVDKRYLV 236
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPDATVGKAYSIE 360
L P+P+GI++HYMRP + AP L+S +GW+LC +EV++C +V WP + +
Sbjct: 237 LAAFPVPLGIVSHYMRPDHFAPHLLSQDKRQGWHLCSMEVLQCHQVEWPSEARLRENGVS 296
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
+C +AYEC++KLLTG+THQVRAQ AA GAPI+GD++Y+PAAIA+ + ++P +
Sbjct: 297 NCELEHDGHAYECEVKLLTGKTHQVRAQFAALGAPILGDTIYIPAAIARRQNRAIDPVLR 356
Query: 421 CQKEYASDDDKEMAVIEWISQHGME-PSVAIGLQACHISW-------------------- 459
+++ + ++ WI HG P +AIGLQA ISW
Sbjct: 357 DDGQWSEEREE-----RWILHHGSSAPKLAIGLQASSISWIGDTTIDILLVDEEPIDRES 411
Query: 460 DDGECCYEARSPWWR 474
+ A SPWWR
Sbjct: 412 SQSNFSFHASSPWWR 426
>gi|449471733|ref|XP_004153393.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like, partial
[Cucumis sativus]
Length = 287
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/279 (67%), Positives = 223/279 (79%), Gaps = 8/279 (2%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
ALGLT+PL TTHQIDNCTEGCV+LART+EYCSIFHRKIR
Sbjct: 249 ALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR 287
>gi|125559481|gb|EAZ05017.1| hypothetical protein OsI_27198 [Oryza sativa Indica Group]
Length = 333
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 213/266 (80%), Gaps = 11/266 (4%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEG-----------CVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
GL TPL TTHQIDNC+EG VVL++T+E+CS+FH IREK+V K YLALT
Sbjct: 246 GLETPLMTTHQIDNCSEGWFVSYHFTSTTSVVLSKTKEFCSVFHGMIREKQVNKRYLALT 305
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEG 332
TAP+ GI+THYMRPIN APRLVSEG
Sbjct: 306 TAPVSTGIITHYMRPINRAPRLVSEG 331
>gi|449467849|ref|XP_004151635.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like, partial
[Cucumis sativus]
Length = 188
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/184 (70%), Positives = 151/184 (82%), Gaps = 4/184 (2%)
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVMECKKVPWPD 350
EKKV KLYLAL PLP GIMTHYMRP N+APRLVS +GW LCQLEV+EC++V WPD
Sbjct: 1 EKKVTKLYLALVAVPLPKGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPD 60
Query: 351 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL 410
A + YSIEDCGWPS+ A+ECKI LLTGRTHQ+RAQLA GAP+VGDS+YMPAA+A++
Sbjct: 61 ADIEAKYSIEDCGWPSKKKAFECKINLLTGRTHQIRAQLADYGAPLVGDSIYMPAAVAEM 120
Query: 411 SSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARS 470
++PGLNPFGKC+KEY S++DKE AV EWI+ HG EP+VAIGLQA ISWD GE Y A +
Sbjct: 121 ANPGLNPFGKCKKEYTSEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAGT 180
Query: 471 PWWR 474
PWWR
Sbjct: 181 PWWR 184
>gi|116793412|gb|ABK26738.1| unknown [Picea sitchensis]
Length = 292
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/169 (68%), Positives = 141/169 (83%), Gaps = 1/169 (0%)
Query: 71 AIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADL 130
AI+ A+ P++ YPEY+RLLPCPSQ+ R+EHLV+ E G V++ IC+ LN P L+VADL
Sbjct: 116 AISTASLPTT-RYPEYNRLLPCPSQSQSSRIEHLVMEETGNVVDLICQALNFPHLYVADL 174
Query: 131 IHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190
IHFGAVY ALVCP PP TAT EQ+++FK+VT P+ L KR+S+KGKTVREAQKTFRIT+
Sbjct: 175 IHFGAVYCALVCPTPPPTATAEQVKIFKKVTAPAALKKRASLKGKTVREAQKTFRITNAS 234
Query: 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVG 239
+ VEAG+YLRVHVHPKRFPRCY++DW SR+IA TES+VVLDKP GTSV
Sbjct: 235 EYVEAGSYLRVHVHPKRFPRCYEVDWLSRVIAETESYVVLDKPVGTSVS 283
>gi|414591092|tpg|DAA41663.1| TPA: hypothetical protein ZEAMMB73_582506 [Zea mays]
Length = 232
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 125/155 (80%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 72 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLIEFGAVYYALVA 131
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T +Q +EAGTYLRVH
Sbjct: 132 PQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 191
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
VHPKRFPRCY IDW SR+IAV + +VVLDKPA TS
Sbjct: 192 VHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATS 226
>gi|384250670|gb|EIE24149.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 457
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 163/322 (50%), Gaps = 70/322 (21%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKE 159
RVEH++V+E G + E + L+LP FV +LI FGAV++ CP P+ A P
Sbjct: 67 RVEHILVNEPGVLSEVVAAALDLPQDFVTELIRFGAVHW---CPVLPVKAGPP------- 116
Query: 160 VTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSR 219
VE Y+RVHVHPKRFP Y +DW +R
Sbjct: 117 ---------------------------------VEKYAYVRVHVHPKRFPSAYKVDWKAR 143
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ VV++KPAG V T DNI ESC ++AL +PL +TH++D CTEG VVL
Sbjct: 144 IVHAAPDFVVINKPAGVPVVPTVDNILESCLACTAQALDEASPLLSTHRLDTCTEGLVVL 203
Query: 280 ARTQEYCSIFHRKIRE-KKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL---------- 328
R E+ + F++ + + ++K Y ALT P G + HY + + R+
Sbjct: 204 GRKYEFVAAFNKLLGQPGALQKYYRALTKQAPPTGGLVHY---VTVGKRVKGLPAHTEVH 260
Query: 329 --VSEGWYLCQLEVMECKKVPW-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
EG C+LE++ +V P AT GWPS AYE I L TGRTHQ+
Sbjct: 261 SSAVEGGQRCELEILTVSRVQLAPCATA--------LGWPSS--AYESLILLKTGRTHQI 310
Query: 386 RAQLAACGAPIVGDSMYMPAAI 407
RAQLAA G P+ GD++Y P A+
Sbjct: 311 RAQLAAEGHPLFGDTLYTPLAM 332
>gi|307111759|gb|EFN59993.1| hypothetical protein CHLNCDRAFT_56496 [Chlorella variabilis]
Length = 476
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 196/465 (42%), Gaps = 116/465 (24%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVAD---------------------LIHFGAVYY 138
RVEH++ G + E + L LP +D L+ FGA++
Sbjct: 29 RVEHVLAPRDGRLSELVTESLQLPQARGSDGLACCGPQHPHGKPFAGAAELLLRFGAIH- 87
Query: 139 ALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTY 198
CP P + ++ ++ +++ +T + D V Y
Sbjct: 88 --TCPVAPTLPASILASMSQQQAAQVQRRRQEALQRAGNSSQARTPQRAAADAEVARHAY 145
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH+HPKRFP Y +DW R++A TE + V+ KPAG T DN E A++ALG
Sbjct: 146 IRVHLHPKRFPAAYSVDWLDRLVASTEEYAVVSKPAGVPAAPTVDNWLECAPACAAQALG 205
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR------------------------ 294
L PL TH++D CTEG +VL RT+ + + F+ ++
Sbjct: 206 LPQPLLITHRLDQCTEGLLVLGRTKSFVARFNELVKRSSNQSSGGGGSSDSAGNSARRRS 265
Query: 295 --------------------------EKKVKKLYLALTTAPLPVGIMTHYMR-------- 320
++ ++K Y A+T +P P+G++ H++
Sbjct: 266 GGSSSGGEAEEEAQTEGGLGGGTAAAQRPLRKFYRAVTASPPPLGLLRHHLSIERQQQGL 325
Query: 321 -PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
IA G +L V++ + V + G W ++ +EC ++LLT
Sbjct: 326 PQFTIAHEAPVGGSLPAELRVLQVQPVRLGEQAAGL--------WGCQEV-FECTVELLT 376
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASD--DDKEMAVIE 437
GRTHQ+RAQL+A G P++GDS+Y P L+SP L Q+ +A D + +
Sbjct: 377 GRTHQIRAQLSAAGCPLLGDSLYQP-----LASPELR-----QRLFAGHPCHDLQQSSGR 426
Query: 438 WISQHGMEPSVAIGLQACHISWDDG--------ECCYEARSPWWR 474
+ EP IGLQAC + D +EA +PWWR
Sbjct: 427 LLG----EPEGGIGLQACKLLVADACMGGSAAQPAVFEAGAPWWR 467
>gi|145344926|ref|XP_001416975.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577201|gb|ABO95268.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 180/413 (43%), Gaps = 87/413 (21%)
Query: 88 RLLPCPSQNCPPRVEHLVVSEGG------PVLEYICRELN---LPPLFVADLIHFGAVYY 138
RL P ++ P +V HLVV + G V +Y+ + L + + +L+ GAV++
Sbjct: 9 RLFPL-AEPLPAKVAHLVVDDDGGTGTALTVTKYLAKTLGDEGVDETYAEELLDIGAVWF 67
Query: 139 ALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTY 198
A P L P R + LS R + D + AG Y
Sbjct: 68 ATAQPPRELRGVPRTARARR-------LSPRDA------------------DAPLRAGNY 102
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
LRVHV PKRFP + +DW + ++ V E +V KPAG SV T DN++ESC RA G
Sbjct: 103 LRVHVQPKRFPAAFAVDWKACVLKVGEGYVCAHKPAGVSVVPTVDNVKESCLAMLERAAG 162
Query: 259 LTT-PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
L L+ H++D TEG +VL T + F + ++ V K+Y LT +P G+ H
Sbjct: 163 LKEGTLKPIHRLDVGTEGVLVLGTTSAFAKEFGDMLADRSVTKVYRVLTENAVPRGVHIH 222
Query: 318 YMRPINIAPR-----------LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
P PR + E + E V P + + E+ P+
Sbjct: 223 DAEPATEGPRKMIMTKVDTDDIDGEIERSAERGGGERGGVSGPKRCILRVLKSENIA-PA 281
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYA 426
R +E K++LLTGRTHQ+RAQ AA AP+VG+++Y +PG
Sbjct: 282 R---WETKVELLTGRTHQIRAQFAALSAPLVGETLY--------RAPG------------ 318
Query: 427 SDDDKEMAVIEWISQHGMEPSVAIGLQAC--HISWD----DGECCYEARSPWW 473
DD E+ V +PS +GLQA HI D A PWW
Sbjct: 319 --DDGEVRV--------QKPSEYLGLQASEMHIKRDCALGPSGTIIRAFEPWW 361
>gi|389548702|gb|AFK83590.1| pseudouridine synthase [uncultured bacterium]
Length = 297
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 136/271 (50%), Gaps = 39/271 (14%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D+ + G Y+RVH++PKRFP IDW + I+ ++ VV++KPAG V T DN E+
Sbjct: 56 DRALSPGQYIRVHLNPKRFP-VEGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
ALG L T ++D G +V+ARTQE+ F+R + ++K+KK Y AL T
Sbjct: 115 LHQLRVALG--GALYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTA 172
Query: 310 LPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWP 365
VG HYM P +P+ ++ GW C L V++ + C P
Sbjct: 173 PEVGRHIHYMEPSERSPKTIASEARPGWQECALRVVKVEPA--------------SCAVP 218
Query: 366 SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY---MPAAIAQLSSPGLNPFGKCQ 422
+ A++ +I L TGRTHQ+RAQL+A G+PIVGD+MY P + PG+ F
Sbjct: 219 APG-AFDVEIDLETGRTHQIRAQLSAIGSPIVGDTMYGSRTPYKVNGTRLPGIGLFSASN 277
Query: 423 KEYASDDDKEMAVIEWISQHGMEPSVAIGLQ 453
WIS G E + A+ Q
Sbjct: 278 S--------------WISPEGREWAFALSPQ 294
>gi|219115335|ref|XP_002178463.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410198|gb|EEC50128.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 497
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 155/321 (48%), Gaps = 55/321 (17%)
Query: 181 QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG 240
+ FR +EAGT LRV+ +P+RFP C ++ R++ + +V+DKP
Sbjct: 194 NQRFRRILKPSWIEAGTDLRVYPNPRRFPACEELT-RDRLLYEDTTFIVVDKPPLLPTQP 252
Query: 241 TTDNIEESCATFASRALGLTTPLRTT--------HQIDNCTEGCVVLARTQEYCSIFHRK 292
+ N E C LG T ++ H++D+C GCVVL++ +F
Sbjct: 253 DSSNYVECCPGCVQDNLGPFTDIQGNEVVRPLLCHRVDSCVGGCVVLSKDGNGQKVFQEM 312
Query: 293 IREKKVKKLYLALTTAPLPVGIMTHYM---------------RPINIAP----RLVSEGW 333
RE+K++KLYLA+TT P+P+G+ H+M + ++ AP R + W
Sbjct: 313 QRERKLRKLYLAVTTQPVPLGMHLHWMWAPQSARGKSGGPPCQLVSHAPPESRRKARQFW 372
Query: 334 YLCQLEVMECKKVPWPDATVGKAYS-IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
C LEV++C+ + +GK S D P+ Y+ I+L+TGR HQVRAQLA+
Sbjct: 373 NRCVLEVVKCEPI-----KIGKEDSHTYD---PAGKVHYQSTIRLVTGRKHQVRAQLASL 424
Query: 393 GAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGL 452
GAPI+ DS+Y P A L +E D D+ + P+ IGL
Sbjct: 425 GAPIIRDSLYEPMAGLTLDR---------LEEAEEDMDERIGRCR-------VPTEPIGL 468
Query: 453 QACHISWDDGECCYEARSPWW 473
QA I + G +AR+PWW
Sbjct: 469 QAHAILF--GGIRAKARTPWW 487
>gi|303272809|ref|XP_003055766.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463740|gb|EEH61018.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 483
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 121/253 (47%), Gaps = 47/253 (18%)
Query: 100 RVEHLVVSEG--GPVLEYICRELNLPPL---FVADLIHFGAVYYALVCPKPPLTATPEQM 154
RV+H+V+ GP + L LP + + LI FGAVYY+ V P P A+
Sbjct: 51 RVKHVVLGPDAFGPAATIVASALGLPDVDARYARQLIEFGAVYYSDVPPPRPRAASGSGS 110
Query: 155 RVF-KEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYD 213
DPS +R + +++V G YLRVHVHPKRFP
Sbjct: 111 SSSTNNKRDPSATPQR----------------VKSANRVVHPGGYLRVHVHPKRFPAARA 154
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLT------------- 260
DW IIA ++ VV+DKPAG +VG T DN +E A +RALG
Sbjct: 155 TDWRRAIIAAGDAFVVVDKPAGVNVGFTVDNAKECVAQCVARALGDAFAENGSDSSSTDS 214
Query: 261 ------------TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
TPL TH++D T G +VLAR E+ F+ +RE+KV+K Y ++ A
Sbjct: 215 STECSSWGWADATPLIVTHRLDAATSGVLVLARDVEFARHFNDALRERKVQKTYACVSEA 274
Query: 309 PLPVGIMTHYMRP 321
+PVG+M H+ P
Sbjct: 275 RVPVGVMEHWTDP 287
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
+G C L V+ C++V P G A P R YE ++L+TGRTHQ+RAQ A
Sbjct: 361 DGRRRCVLRVLTCEEVKIPGEKAGDA--------PPR---YESTVELVTGRTHQIRAQFA 409
Query: 391 ACGAPIVGDSMYMPAAI 407
A GAP++GD +Y A +
Sbjct: 410 ASGAPLLGDVLYGGARV 426
>gi|428181430|gb|EKX50294.1| hypothetical protein GUITHDRAFT_104105 [Guillardia theta CCMP2712]
Length = 296
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 144/293 (49%), Gaps = 44/293 (15%)
Query: 114 EYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIK 173
+ I E + V +L+ FGAVY PP A + K+S +K
Sbjct: 9 KVIMEETGMDGKLVKELVKFGAVYTG-----PPQDAMDK---------------KQSPVK 48
Query: 174 GKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKP 233
VR Q D + G+Y+RVH PKR Y IDW++R+I ++ +V+DKP
Sbjct: 49 A--VRTMQ--------DVELLPGSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKP 98
Query: 234 AGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKI 293
G T DN E + + ++ L T ++D CT G ++ A+T+++C ++ +
Sbjct: 99 PGVPSLTTIDNGVECVMSQVEKMRNIS--LMPTSRLDVCTAGVLIFAKTRDFCLKTNKAM 156
Query: 294 REKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATV 353
E++ K+YL L+ LP G + L EGW LE+++C+ + T
Sbjct: 157 SERRCDKVYLLLSERELPRG------EDLRSRQDLQEEGWQDAVLEILDCRCL----LTF 206
Query: 354 GKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
+ + ++ G R +E ++L+TGRTHQ+R Q AA GAP++GD+ Y PAA
Sbjct: 207 LQPFDLKQQG--GRRKVFEYSVRLITGRTHQIRLQFAALGAPVLGDTRYTPAA 257
>gi|223999965|ref|XP_002289655.1| hypothetical protein THAPSDRAFT_268629 [Thalassiosira pseudonana
CCMP1335]
gi|220974863|gb|EED93192.1| hypothetical protein THAPSDRAFT_268629 [Thalassiosira pseudonana
CCMP1335]
Length = 404
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 155/325 (47%), Gaps = 55/325 (16%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
R+ +R +E GT +RV+ HP+RFP CYD +R++ + +V+DKP
Sbjct: 97 RQMSLRYRRILTPSTIEPGTDIRVYPHPRRFPSCYDFADPNRLLYEDTTFIVVDKPPMLP 156
Query: 238 VGGTTDNIEESCATFASRALGLTTPLRTT-----------HQIDNCTEGCVVLARTQEYC 286
N EE C + LG P +T H++D+C GC+VL++
Sbjct: 157 SQPEPSNYEECCPGCVNTLLG---PFKTIAGEDVARPLICHRVDSCVGGCLVLSKDGNGQ 213
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---------------RPINIAP---RL 328
+F R++K+KKLYLA+TT P+P+G+ H+M + ++ P R
Sbjct: 214 RVFSDLQRQRKIKKLYLAVTTEPVPLGMHVHWMWGSLNARGQSGGTPCQFVSHTPPVSRK 273
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
++ W C LEV++C+ + + G Y P Y+ I+L+TGR HQVRAQ
Sbjct: 274 KAKSWIRCVLEVVKCEPIAI-NKEDGHTYD------PGDKQHYQSTIRLVTGRKHQVRAQ 326
Query: 389 LAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSV 448
LA+ G P++ D++Y AI+ G+ ++ D+ +A + P+
Sbjct: 327 LASLGCPLIRDTLY--EAIS-----GMTLEDLEDEDSEERMDEALANVR-------VPTE 372
Query: 449 AIGLQACHISWDDGECCYEARSPWW 473
IGLQA I + +AR+PWW
Sbjct: 373 PIGLQAHAILFAGVRA--KARTPWW 395
>gi|426404290|ref|YP_007023261.1| RNA pseudouridylate synthase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860958|gb|AFY01994.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 283
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 28/218 (12%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D V G Y+RVH P+RF D W SRI+ E VV +K +G V + DN+ E+
Sbjct: 56 DSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVANKISGLPVHASVDNLHENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
++ + L T + TH++D T G +V A+T E+ S F++ + +++ K+Y A
Sbjct: 115 QSYLQQTLNQT--VYVTHRLDVPTRGLIVYAKTPEFQSEFNKLLIAREMNKIYRARVQGQ 172
Query: 310 -LPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGW 364
L G++ HYM P AP++VS+ W C LE++E K+ + +G
Sbjct: 173 NLSTGLLQHYMEPSPRAPKVVSKEMQPKWQECLLEILEFSKL---ENGLG---------- 219
Query: 365 PSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
E +IKL TGRTHQ+RAQL+A G PIVGD Y
Sbjct: 220 -------EARIKLHTGRTHQIRAQLSAEGHPIVGDVAY 250
>gi|397620710|gb|EJK65863.1| hypothetical protein THAOC_13233 [Thalassiosira oceanica]
Length = 470
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 43/325 (13%)
Query: 171 SIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL 230
+++ R+ +R +E GT +R++ HP+RFP CY+ R + + +V+
Sbjct: 164 TLEEYVARQESLRYRRVLTASTIEPGTDIRIYPHPRRFPSCYEFSDPQRKLYEDTTFIVV 223
Query: 231 DKPAGTSVGGTTDNIEESCATFASRALG---------LTTPLRTTHQIDNCTEGCVVLAR 281
DKP N EE C + +G + PL H++D+C GCVVL++
Sbjct: 224 DKPPMLPTQPEPSNYEECCPGCVNLLMGPFHTIAGEEVARPL-ICHRVDSCVGGCVVLSK 282
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM------------RPINIAPRLV 329
+F R++K+KKLYLA+TT P+P+G+ H+M P
Sbjct: 283 DGNGQRVFSDLQRQRKIKKLYLAVTTEPVPLGMHVHWMWASLNARGQMGGTPCQFVSHTP 342
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
++ M+ KK P K +++ W YE I+L+TGR HQVRA L
Sbjct: 343 PASRKKAKVSHMKNKKSILPHY---KTQALQ--AWIRGTQHYESTIRLVTGRKHQVRAML 397
Query: 390 AACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVA 449
A+ G P++ D++Y P + L S D++ E + E + + + P+ A
Sbjct: 398 ASLGCPLIRDTLYEPISGMTLES-------------LEDEEMESRMDEALDKVRV-PTQA 443
Query: 450 IGLQACHISWDDGECCYEARSPWWR 474
IGLQA I + +AR PWWR
Sbjct: 444 IGLQAHAILFAGVRA--KARVPWWR 466
>gi|255071535|ref|XP_002499442.1| predicted protein [Micromonas sp. RCC299]
gi|226514704|gb|ACO60700.1| predicted protein [Micromonas sp. RCC299]
Length = 474
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/459 (26%), Positives = 177/459 (38%), Gaps = 136/459 (29%)
Query: 101 VEHLVVSEGGPVLEYICREL---NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVF 157
VEH+++ GG + + + ++ V L+ GAVY A V P
Sbjct: 62 VEHVILDAGGLIAAVLPAHIPGDDVDETTVTQLVRIGAVYAADVPPP------------- 108
Query: 158 KEVTDPSVLSKRSSIKGKT-VREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW 216
K KT VR + + R+ D+ + G Y+RVHVHPKRFP DW
Sbjct: 109 ---------------KDKTGVRRSLRPARVNSPDRALPNGAYVRVHVHPKRFPAAVACDW 153
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF-ASRALGLTTPLRTT--------- 266
RIIA V +DKP G G + DN E CAT+ +RAL L TT
Sbjct: 154 GGRIIARGRDWVAVDKPPGVPAGPSLDNATE-CATYRVARAL---RRLETTDNDDDDDDE 209
Query: 267 ---------------------------------------HQIDNCTEGCVVLARTQEYCS 287
H++D T G +VLAR + +
Sbjct: 210 EEEDEEKKKKKKEEEEGGHSWWGGDGDGDGDGGTTLTTTHRLDVATSGVLVLARRSSFAA 269
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHY---------------MRPINIA-PR---- 327
F+ +R ++V K Y +T +PVG++ H+ MR + PR
Sbjct: 270 EFNDALRRRRVTKTYECVTARAVPVGVLEHWTEESSGAREGPARFEMRELEPGDPRWRDV 329
Query: 328 -----------LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIK 376
+ +G LC L V+ C++ + K + E AY I+
Sbjct: 330 AADGKYSDDAFVTPDGRKLCVLRVLGCEETEGLTKRLTKRLAGEAGEAGEASRAYVSTIE 389
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVI 436
L+TGRTHQ+RAQL+A G PI+GD +Y L+ G DDD+ +
Sbjct: 390 LVTGRTHQIRAQLSAIGCPILGDVLY--------GGVDLSREGGATPRVLRDDDR---LC 438
Query: 437 EWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRC 475
++ M+ A+G + + A PWWR
Sbjct: 439 LHAAEMRMDADSALGPKGTTL---------RAGPPWWRA 468
>gi|42523804|ref|NP_969184.1| RNA pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
gi|39576011|emb|CAE80177.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
HD100]
Length = 283
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 28/218 (12%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D V G Y+RVH P+RF D W SRI+ E VV +K +G V + DN+ E+
Sbjct: 56 DSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVTNKISGLPVHASVDNLHENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA- 308
++ + L + TH++D T G +V A++ E+ + F++ + +++ K+Y A
Sbjct: 115 QSYLQQTL--HQNVYVTHRLDVPTRGLIVYAKSPEFQTEFNKLLIAREMNKIYRARVQGH 172
Query: 309 PLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGW 364
L G++ HYM P AP++VS+ W C LE++E K+
Sbjct: 173 SLSTGLLQHYMEPSPRAPKVVSKELQPKWQECLLEILEFSKL------------------ 214
Query: 365 PSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ E +IKL TGRTHQ+RAQL+A G PIVGD Y
Sbjct: 215 --ENEMSEVRIKLHTGRTHQIRAQLSAEGHPIVGDVAY 250
>gi|424513024|emb|CCO66608.1| predicted protein [Bathycoccus prasinos]
Length = 417
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 160/346 (46%), Gaps = 55/346 (15%)
Query: 92 CPSQNCPPRVEH---LVVSEGGPVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPL 147
PS+ P RVEH +S + E + E+ ++ + LI FGAVY
Sbjct: 61 IPSEKRPARVEHCDLKSLSNNKKLSEALHGEITDVTERYFQALIEFGAVY---------- 110
Query: 148 TATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT--YLRVHVHP 205
++D L + ++ TV+ K R D I+ AG+ Y+R HV+P
Sbjct: 111 ------------ISDE--LEEDFQLEPNTVKHKMKRIR---SDVILPAGSRHYVRAHVNP 153
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL------ 259
+RF + W I+ T+ VV+ KP+G V + DN +E+ AL +
Sbjct: 154 RRFLAAGETRWMDCILKETDDFVVVMKPSGLPVSPSVDNAKENVLRCVWSALRVGNENDD 213
Query: 260 -TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318
T L TH++D T G VV+A+ + SIF + +R+ V+K YLALT P +G+MTH
Sbjct: 214 EATKLFPTHRLDVTTSGVVVVAKNSKAASIFSKILRDGFVEKQYLALTENPAKIGLMTHE 273
Query: 319 MRPINIAPRLVSEGWYLCQLEVMEC----------KKVPWP-DATVGKAYSIEDCGWPSR 367
P + R + +G +++ ++ KK P + + + E +
Sbjct: 274 YEP---SERTIGKGARTVKMKTLKLSEDDTASYLKKKTQIPSNVAILRVEKSEPVAVNGK 330
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSP 413
+ YE +KL+TGRTHQ+RAQ + ++ D +Y+ A + + P
Sbjct: 331 TF-YENTVKLITGRTHQIRAQFSKENLALINDCLYLNANDGETAPP 375
>gi|384252304|gb|EIE25780.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 363
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 162/379 (42%), Gaps = 76/379 (20%)
Query: 110 GPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKR 169
G +LE +L V+ LI GAVYY T P Q ++ + +
Sbjct: 43 GTLLEIAAEVSDLTLDVVSGLIDLGAVYYGE-------TEAPGQAPKWRRANRLAEAAPH 95
Query: 170 SSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV 229
IK G ++RVH +PKR+P DW +R+I + V
Sbjct: 96 HPIK---------------------QGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCV 134
Query: 230 LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIF 289
++KPA V N E+ +ALGL L H++D CT G ++L R ++ F
Sbjct: 135 VNKPARIPVQSHESNSVETVPRCLVKALGLEH-LWMLHRLDYCTTGVLLLGRNEQSSRRF 193
Query: 290 HRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKV-- 346
+ + KV+K Y LT P+ G+ + HYM P G + LEVM K +
Sbjct: 194 MQDMEAHKVQKQYKVLTPVPVEAGLEVVHYMYP----------GPFGSSLEVMAGKGLRA 243
Query: 347 -------PWPDATVGKAY-----SIEDCGWPSRDYAYECKIKL-LTGRTHQVRAQLAACG 393
P +T GK + I D P + YE + L GRTHQ+RAQLAA G
Sbjct: 244 RGPRLLSQQPIST-GKEWKKCVLKIVDTKLPLQ--VYESTVNLSFGGRTHQIRAQLAAIG 300
Query: 394 APIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQ 453
AP++GD MY AIA G + A D+ + I+ SQ IGL
Sbjct: 301 APVIGDVMY--GAIA----------GATVSDSAIADNDLIRRIDDCSQ----IDGPIGLH 344
Query: 454 ACHISWDDGECCYEARSPW 472
A ++W+D Y+A +PW
Sbjct: 345 AYSMTWED--RTYKAVAPW 361
>gi|303274711|ref|XP_003056671.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461023|gb|EEH58316.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 548
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 168/422 (39%), Gaps = 96/422 (22%)
Query: 126 FVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFR 185
++L+ GAVY + PE R + D S R ++G +R ++
Sbjct: 125 LASELLDAGAVY---------VDWWPEGRRAGGDDDDESAARWRR-LRGDVIR--RRLAV 172
Query: 186 ITHVDQIVEAGTYLRVHVHPKRF-PRCY--DIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
+ AG +RVH P+R+ C+ + W R++ E + ++KP
Sbjct: 173 VPTPFPHARAGERVRVHRTPRRYRDACWLGEAGWRKRVVYEDEETLAVNKPHALPTQAHE 232
Query: 243 DNIEESCATFASRALGLT-------TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
N E +RALG T L TH++D T G VVL +T F+ I
Sbjct: 233 SNAAECVPGCVARALGFTGGVTDGDDALLVTHRLDASTSGVVVLGKTLGAVRAFNASIAG 292
Query: 296 -KKVKKLYLALTT-------------------APLPVGIMTHYMRPINIAP--------- 326
K+V K Y+AL P+P+G HYM P
Sbjct: 293 GKRVTKTYVALVENASNVRRRGVTVEDATTPPPPVPLGRFVHYMYPGPFGASALGGRGAR 352
Query: 327 ----RLV-------SEG----WYLCQLEVMECKKVPWPDATVGKAYSIE----DCGW--- 364
RL+ S+G W C+L V C + D +A E + W
Sbjct: 353 RSNARLLRRRAPSASDGDAKPWRRCELVVRSCARASPRDVAAWRALFAESVEGNANWEAA 412
Query: 365 ----------PSR----DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL 410
PSR D YE +I+L+TGRTHQVRAQLAA G PI+GD++Y P A
Sbjct: 413 RGVDDGSRDEPSRRAGDDAVYEVEIELVTGRTHQVRAQLAALGFPILGDTLYAPMAGY-- 470
Query: 411 SSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARS 470
L+ G+ + + D +E E + + G+ P + L A + WDD + A
Sbjct: 471 ----LHDEGEGEGDLVDVDARETHASELL-EKGVVPDWPVALHAASLRWDD--KLFAAPP 523
Query: 471 PW 472
PW
Sbjct: 524 PW 525
>gi|255088607|ref|XP_002506226.1| RNA pseudouridylate synthase [Micromonas sp. RCC299]
gi|226521497|gb|ACO67484.1| RNA pseudouridylate synthase [Micromonas sp. RCC299]
Length = 481
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 150/347 (43%), Gaps = 84/347 (24%)
Query: 191 QIVEAGTYLRVHVHPKRFPR-CY--DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+IV G +RVH P+R+ C+ W R++ ++ +V++KP N E
Sbjct: 153 KIVAKGEVIRVHKRPRRYRHACWLGADAWRHRVVHEDDAILVVNKPHRLPSMAHESNGVE 212
Query: 248 SCATFASRALGLT-TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE----KKVKKLY 302
CA R+LGL+ + LR TH++D+ T G +VL +T F+ + + K++ K Y
Sbjct: 213 HCAGCLERSLGLSPSTLRVTHRLDSSTSGVLVLGKTATAVREFNDSVAKTPGSKEIVKSY 272
Query: 303 LALTTA--PLPVGIMTHYMRPINIAP-------------RLV---SEG------------ 332
AL A +P+G+MTH+M P P RLV ++G
Sbjct: 273 AALVYAKHAVPLGLMTHWMYPGPFGPGAFHGRTLRRSRARLVRSSADGERGDDTGGQGTG 332
Query: 333 --WYLCQLEVMECKKV------PWP---DATVGKAYSIEDCGW----------PSRD--- 368
W C+L V+ C + W D + +A D G P D
Sbjct: 333 KRWKRCELRVVSCDRATQSQVDTWRTLFDRELERARKPFDGGADDPLVSGGDSPGGDSPG 392
Query: 369 -YAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYAS 427
+ +++L+TGRTHQVRAQLAA GAP++GDS+Y P A Y
Sbjct: 393 ASVWAVRVELVTGRTHQVRAQLAAAGAPLLGDSLYAPMA-----------------GYLH 435
Query: 428 DDDKEMAVIE-WIS-QHGMEPSVAIGLQACHISWDDGECCYEARSPW 472
D D E A E W + G P + L A + W G+ + PW
Sbjct: 436 DRDDERAAEEAWGRMERGTVPDWPVALHAETLRW--GDSVFSTSPPW 480
>gi|302836900|ref|XP_002950010.1| hypothetical protein VOLCADRAFT_90418 [Volvox carteri f.
nagariensis]
gi|300264919|gb|EFJ49113.1| hypothetical protein VOLCADRAFT_90418 [Volvox carteri f.
nagariensis]
Length = 421
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 192 IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT 251
+V G Y+RVH PKR+P CY DW R++ +VV++KPAG N E A+
Sbjct: 115 VVPRGHYVRVHPRPKRYPACYCADWPRRVLHCDSDYVVVNKPAGLPCMRHESNALEELAS 174
Query: 252 FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKI--REKKVKKLYLALTTAP 309
RALG+ L H++D T G VVL+RT+E F R + RE + K Y LT +P
Sbjct: 175 CVGRALGMEG-LEVCHRLDQWTTGVVVLSRTKEANKAFKRSLQDREAGLIKTYKGLTYSP 233
Query: 310 LPVGIMTHYMR--PIN-------------IAPRLVSEG----WYLCQLEVMECKK 345
+P+G + HYM P N PRL+S W LC+L+V EC++
Sbjct: 234 VPLGTLEHYMYDGPFNEGAPVLGGGNLRPRGPRLLSRTAHARWRLCRLDVRECRE 288
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 27/36 (75%)
Query: 371 YECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
YE I L TGRTHQ+RAQLA+ G P+VGD MY P A
Sbjct: 386 YESTIDLHTGRTHQIRAQLASIGRPLVGDVMYAPIA 421
>gi|422294702|gb|EKU22002.1| ribosomal pseudouridine [Nannochloropsis gaditana CCMP526]
Length = 381
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 18/197 (9%)
Query: 181 QKTFRITHVDQ-----IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
Q FR TH+ + V G RV++ P+RFP C ID+ R+I + +++DKP G
Sbjct: 160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPG 218
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
N E+ AS +LGL L +++D T G V LA+T + + F +IR
Sbjct: 219 CPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRR 276
Query: 296 KKVKKLYLALTTAPLPVGIMTHYMRPINI-----APRLVSE----GWYLCQLEVMECKKV 346
++ K Y AL T P+PVG++ HYM P I APR +S GW LCQ V+ C+ V
Sbjct: 277 DRLGKRYKALLTGPVPVGLLEHYM-PGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPV 335
Query: 347 PWPDATVGKAYSIEDCG 363
+ + + + +D G
Sbjct: 336 AFSELNLVAIHDGQDGG 352
>gi|281206797|gb|EFA80981.1| hypothetical protein PPL_05814 [Polysphondylium pallidum PN500]
Length = 702
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 133/301 (44%), Gaps = 53/301 (17%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+ + ++ +EA + +++ +P+ + + ID ++ + +V+DKP G S+G DN
Sbjct: 374 RVFNYEETIEADSLVKIFFYPRHYSTDH-IDLQRLVVYENDQFMVIDKPHGVSIGPVIDN 432
Query: 245 IEESCATF--ASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE-----KK 297
+ SR LTT + H++D T G VL + +Y S F+ +R KK
Sbjct: 433 YHNNINHLIKTSRPSELTT-IYNPHRLDFQTRGLCVLVKDSDYISQFNLLLRNRDNISKK 491
Query: 298 VKKLYLALTTAP------LPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVMECKK-- 345
+ Y + + G+ THYMRP + +S + W+ C L V+ K
Sbjct: 492 YRAFYKQVDNLQEDKDDIIEPGLYTHYMRPTKSTFKEMSHSKIDSWHECILRVLNGGKCN 551
Query: 346 --VPWPD------------------------ATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
+P D T+GK S + + +Y I+L+T
Sbjct: 552 VDLPISDDEHSYLNIDLINSDNNTNNNNSYIDTIGKGNSRKRMNNVNLNY---VDIELIT 608
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWI 439
GRTHQ+RAQL A G P++GD MY I QL++P F + Y K ++I +
Sbjct: 609 GRTHQIRAQLTAIGKPLIGDKMYGGIPIQQLANP---LFSSSDQPYPYRSSKHSSIIGLV 665
Query: 440 S 440
S
Sbjct: 666 S 666
>gi|328867454|gb|EGG15836.1| hypothetical protein DFA_09505 [Dictyostelium fasciculatum]
Length = 418
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 41/269 (15%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCA--TFASRALGLTTPLRTTHQIDNCTEGCV 277
II ES +V+DKP G +VG DN++ + + + + TP+ H+ID T G
Sbjct: 144 IIHDNESFMVVDKPHGINVGPLIDNLKNNLSWMVRQQQQQSIDTPIYNPHRIDFPTRGLC 203
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALT-----------------TAPLPVGIMTHYMR 320
+L + + F++ +++ +KK Y L VG HYM+
Sbjct: 204 LLVKKSDEIHRFNQLFKDRTIKKRYRVFIYENQNDKDKEIEKDGEEKEKLRVGRYIHYMK 263
Query: 321 PINIAPRLVS----EGWYLCQLEVMECK-----KVPWPDATVGKAYSIEDCGWPSRDYAY 371
P + +S +GW+ C E+ K V D +GK D P R
Sbjct: 264 PSKSTIKQLSLDKVDGWHDCGTEIDYLKTDFTKNVYMDDRDIGKG----DKRRPHRRIQL 319
Query: 372 E-CKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD 430
+ ++L+TGRTHQ+R+Q++ G PI+GD MY ++ ++++ K + S D
Sbjct: 320 KTVDVELITGRTHQIRSQMSFMGYPIIGDKMYGGKSLNEIANEKEESKDKVVADGMSLDS 379
Query: 431 KEMAVIEWISQHGMEPSVAIGLQACHISW 459
++ G S IGL A +S+
Sbjct: 380 RDYD--------GSLVSSVIGLMAYQLSF 400
>gi|299115628|emb|CBN75829.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 505
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
G YLRVH P+ FP +DW+ RI+ E VV+DKPAG T DN ++C AS
Sbjct: 151 GAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASL 210
Query: 256 ALG--------LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
A+ L PL ++D CT G VV AR +E + R ++VKK YLAL T
Sbjct: 211 AVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLT 270
Query: 308 --APLPVGIMTH 317
+P G M H
Sbjct: 271 PGPAVPTGSMAH 282
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKE 432
C ++L TGRTHQ+R QLAA G+ IVGD+ Y G+ + DDD
Sbjct: 422 CAMELETGRTHQLRLQLAAMGSAIVGDTRYR------------GVVGRVHRGLRVDDD-- 467
Query: 433 MAVIEWISQHGMEPSVAIGLQACHI--SWDDGECCYEARSPWW 473
S+ G EP AI LQA I W + P W
Sbjct: 468 ------TSRFGQEPE-AIALQAARIEFEWQGRTVVFSTDRPSW 503
>gi|66818229|ref|XP_642774.1| hypothetical protein DDB_G0277359 [Dictyostelium discoideum AX4]
gi|60470894|gb|EAL68866.1| hypothetical protein DDB_G0277359 [Dictyostelium discoideum AX4]
Length = 386
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 43/264 (16%)
Query: 187 THVDQIVEAGTYLRVHVHPKRFPRCYDIDW---NSRIIAVTESHVVLDKPAGTSVGGTTD 243
+D+++ G+ L+ +P R ID+ N II + +V+DKP G +VG D
Sbjct: 82 VQIDKVINKGSLLKYFFYP-RVNSTDHIDFKNFNKYIIFENQYFLVIDKPHGINVGPIVD 140
Query: 244 NIEESCATFASRALG-------LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK 296
++ + +F L L H +D+ T G V+A+ + S F++ + +K
Sbjct: 141 HLHNNFTSFVKDWLKKRNNNNDNNLILYNPHNLDSPTRGLFVIAKDFNFLSKFNKLLSDK 200
Query: 297 KVKKLYLALT-------TAPLPVGIMTHYMRPINIAP-RLVSE-----GWYLCQLEVMEC 343
KV K Y A + GI H+M N +P +L E C L+V++
Sbjct: 201 KVSKKYKAFIPIKENEENIEIKPGIYKHFMEITNHSPKKLFDEQNQDNSLKECLLKVLKV 260
Query: 344 KK----VP--WPDATVG---KAYSIEDCGWPSRDYAYECK--------IKLLTGRTHQVR 386
++ VP D ++ +D G D+ + K I+L+TGRTHQ+R
Sbjct: 261 ERKEIYVPLGLKDVSIDLLQDDLQFDDIG--KGDFRKQTKKLLFNVVEIQLITGRTHQIR 318
Query: 387 AQLAACGAPIVGDSMYMPAAIAQL 410
AQL+ G P++ D MY ++ L
Sbjct: 319 AQLSKLGFPLLSDIMYGGTSLNHL 342
>gi|219120675|ref|XP_002181071.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407787|gb|EEC47723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 607
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 114/275 (41%), Gaps = 68/275 (24%)
Query: 182 KTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRI---------IAVTESH----V 228
K R+ ++AG YLRVH HP+RFP + DW+ I + V E +
Sbjct: 131 KPVRLDQTAPALQAGDYLRVHHHPRRFPHAHRYDWSKSIHDTSGDKPGVIVAEDTDKGWL 190
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTP--------LRTTHQIDNCTEGCVVLA 280
V+ KP+ V T DN E+ A +A +P + T ++D T G VV+A
Sbjct: 191 VIRKPSMVPVHMTVDNCRENVADCLKQARAWQSPTADARDVYITTPQRLDQNTSGLVVVA 250
Query: 281 RTQEYCSIFHRKIREK------------------KVKKLYLALTTAPLPVGIMTHYMRPI 322
+ + + F +R K V KLY L + P + H P
Sbjct: 251 THKPFAAYFASLLRSKTARQLSGDGDDRNHESLGSVHKLYRCLPSIRAPKRFVEH---PP 307
Query: 323 NIAPRLVSEGWYLCQLEVMECKKV---------------PWPDATVGKAYSIEDCGWPSR 367
+ W C L++++ V W DA+ G+A I P
Sbjct: 308 D------DTQWPECLLKIVKVGNVCELVGSPAGQDLAEALWQDAS-GQAKRIP----PQA 356
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
E +I+LLTGRTHQ+R QL+ G P+VGD+ Y
Sbjct: 357 KAVVEVEIELLTGRTHQIRGQLSTLGFPLVGDAQY 391
>gi|428168065|gb|EKX37015.1| hypothetical protein GUITHDRAFT_145364 [Guillardia theta CCMP2712]
Length = 330
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 107/235 (45%), Gaps = 31/235 (13%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R ++D T G +VL + E+ S F+R +RE + Y AL P+G + HYM P
Sbjct: 66 VRIHSRLDVPTHGLLVLGKRSEFVSRFNRLLREHQE---YKALVLGHPPLGELVHYMEPS 122
Query: 323 NIAPRLVS----EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDY--------- 369
+P+++ EGW C+L V + + +A S+ RD
Sbjct: 123 KRSPKVLDTAAREGWLECRLVVKSASRRETASLSE-RAASVLQQQSRVRDEKQADAEEDK 181
Query: 370 ----AYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEY 425
YE +I+L+TGRTHQ+RAQ+A G P+VGD MY I S L + ++E+
Sbjct: 182 SPLEVYEVRIELITGRTHQIRAQMAFAGCPVVGDEMY---GIGGSSGDLLQE--ETRREF 236
Query: 426 ASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDD--GECCYEARSPWWRCKCN 478
+ D + A + + + LQAC + D G+ E R R KC
Sbjct: 237 SMDVE---AKTRARTMEARQAEGTLALQACRLVLPDMMGKGVSEERGDSKRRKCE 288
>gi|330840802|ref|XP_003292398.1| hypothetical protein DICPUDRAFT_83013 [Dictyostelium purpureum]
gi|325077354|gb|EGC31072.1| hypothetical protein DICPUDRAFT_83013 [Dictyostelium purpureum]
Length = 382
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 40/261 (15%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFP----RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGT 241
T++D + + L+V +P+ + RC D + II + +++DKP G VG
Sbjct: 73 FTNID--LAKDSILKVFFYPRPYSMEHVRCED--PSKYIIFENQYFLIVDKPHGLDVGPI 128
Query: 242 TDN----IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKK 297
DN I + + L H+ID T G +V+ + ++ F++ I + +
Sbjct: 129 VDNYHGNITAIIGDYIEKRDNRKHKLYNPHRIDGPTRGLIVIIKDPDFLKKFNKMIIKNE 188
Query: 298 VKKLYLAL-----TTAPLPVGIMTHYMRPINIAPRLVS----EGWYLCQLEVM--ECKKV 346
V K+Y A + G+ HYM P N+ P+++ E ++ C L+V+ E K++
Sbjct: 189 VSKIYKAFLPKSSNQNIINPGLYRHYMSPDNVLPKVMVNEKLEKYHECLLQVLNVEEKEI 248
Query: 347 PWPDAT-------VGKAYSIEDCGWPSRDYAYECK--------IKLLTGRTHQVRAQLAA 391
P + + E G DY + K I L+TGRTHQ+RAQ +
Sbjct: 249 SIPIDIDEVSLDLLQTPINFEQVG--KGDYRKQMKSIPFYVVDINLITGRTHQIRAQFSK 306
Query: 392 CGAPIVGDSMYMPAAIAQLSS 412
G P++GD +Y I L
Sbjct: 307 MGYPLLGDRLYGGKKILDLDQ 327
>gi|308801855|ref|XP_003078241.1| putative RNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116056692|emb|CAL52981.1| putative RNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 215
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 101/254 (39%), Gaps = 84/254 (33%)
Query: 254 SRALGLTT-PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
RA+GL L+ H++D TEG +VLA T + F + ++ V KLY LT+ +
Sbjct: 3 ERAMGLREGTLKPVHRLDVGTEGVLVLATTSAFAKEFGDMLAKRSVTKLYRVLTSRAVET 62
Query: 313 GIMTHYMRPINIAPR-----------LVSEGWYL----------------CQLEVMECKK 345
GI H P PR + SE + C L V+ECK+
Sbjct: 63 GIHIHDAEPATEGPRKMILTEVRTADVASEIEKVMVRGGGERGGVSVPKRCILRVIECKE 122
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPA 405
V G Y +E ++LLTGRTHQ+RAQ AA G+P+VG+++Y
Sbjct: 123 V-------GSGY-------------FETTVELLTGRTHQIRAQFAALGSPLVGETLY--- 159
Query: 406 AIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHI------SW 459
A DDD ++ V +P +GLQA + S
Sbjct: 160 -------------------RAPDDDGDVRV--------QKPDERLGLQASELHIHSECSL 192
Query: 460 DDGECCYEARSPWW 473
A PWW
Sbjct: 193 GPAGTVLRALEPWW 206
>gi|337754571|ref|YP_004647082.1| ribosomal large subunit pseudouridine synthase C [Francisella sp.
TX077308]
gi|336446176|gb|AEI35482.1| Ribosomal large subunit pseudouridine synthase C [Francisella sp.
TX077308]
Length = 307
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 28/220 (12%)
Query: 193 VEAGTYLRV-------HVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTT 242
V AG +R+ V + PR + RI+ T+ +++++KP+G +V G
Sbjct: 56 VSAGDIVRIPPFNLDEKVENIKVPRSHLDFLEQRILYETDDYIIVNKPSGMAVHGGSGVN 115
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
+ E +A L H++D T GCV+LA+ F +E+KVKK+Y
Sbjct: 116 SGLVERLRQLRPKA----RRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKERKVKKIY 171
Query: 303 LALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDC 362
AL I+ M + ++ R +G + +++ E KK + + S++
Sbjct: 172 YALVHGYWDKKIL---MIDLPLSRRETKDGQRIVKVDKREGKK------ALTRILSVQKV 222
Query: 363 GWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
G DY+ +IKL TGRTHQ+R A G PIV D Y
Sbjct: 223 G----DYSL-LEIKLETGRTHQIRVHTKAMGHPIVADKKY 257
>gi|410582793|ref|ZP_11319899.1| 23S RNA-specific pseudouridylate synthase [Thermaerobacter
subterraneus DSM 13965]
gi|410505613|gb|EKP95122.1| 23S RNA-specific pseudouridylate synthase [Thermaerobacter
subterraneus DSM 13965]
Length = 386
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Query: 219 RIIAVTESHVVLDKPAGT---SVGG--------TTDNIEESCATFASRALGLTTPLRTTH 267
R++ E +V++KPAG GG D + + A + G H
Sbjct: 130 RVVYEDEHLLVVNKPAGLLTHGAGGFGAAREYTLLDWVRDELARRGTLPEGALYQPSPGH 189
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM------RP 321
++D T G V +T++ + +R K YLA+ P G++ H + R
Sbjct: 190 RLDRNTSGLVAFGKTRQGAARLADWMRSGAAVKEYLAIVRGRPPEGVLQHQLQRDRQRRV 249
Query: 322 INIAPRLVSEGWYLCQLEVMEC--KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
+ P V++ +E+ E +K P A SR Y C+I+LLT
Sbjct: 250 TRVLPVSVAQKQPAAPVEIGEAGLEKAPGAAEQARSATLHLTVVGASRGYTL-CRIRLLT 308
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
GRTHQ+RAQLAA G P+ GD Y + L P L+
Sbjct: 309 GRTHQIRAQLAAAGHPLAGDRKYGGPRVEGLDRPALH 345
>gi|387886246|ref|YP_006316545.1| lysozyme [Francisella noatunensis subsp. orientalis str. Toba 04]
gi|386871062|gb|AFJ43069.1| lysozyme [Francisella noatunensis subsp. orientalis str. Toba 04]
Length = 309
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ T+ ++V+DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYETDDYIVVDKPSGMAVHGGSRVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +E+KV K+Y AL I T + P++ +G
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKERKVNKIYYALVHGHWDERIDTIDL-PLSRTE--TKDG 198
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ +++ E K+ + + S++ G DY+ +IKL TGRTHQ+R A
Sbjct: 199 QRIVKVDKREGKR------ALTRILSVQKIG----DYSL-LEIKLETGRTHQIRVHTRAM 247
Query: 393 GAPIVGDSMY 402
G PIV D Y
Sbjct: 248 GYPIVADKKY 257
>gi|255021322|ref|ZP_05293370.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus ATCC 51756]
gi|340782174|ref|YP_004748781.1| ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus SM-1]
gi|254969185|gb|EET26699.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus ATCC 51756]
gi|340556327|gb|AEK58081.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus SM-1]
Length = 316
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 19/198 (9%)
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT 266
R P +D R++ + +VLDKPAG +V G + I + L
Sbjct: 79 RLPEQLAVDLRERVLFEDDRVLVLDKPAGMAVHGGS-GIRYGVIEALRQLRPDLRELELV 137
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T GC++L++ + H+ +RE+ + K YLAL G R + +
Sbjct: 138 HRLDRDTSGCLLLSKRRSALRSLHQALREEAMDKRYLALVG-----GRWKGAERVVKLPL 192
Query: 327 R--LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R ++ G + +++ + K P T + Y ED G A + +L TGRTHQ
Sbjct: 193 RKNILQSGERIVRVDEDQGK----PART--RFYREEDLG-----IATLLRAELDTGRTHQ 241
Query: 385 VRAQLAACGAPIVGDSMY 402
+R L A G P GDS Y
Sbjct: 242 IRVHLQAIGHPTAGDSKY 259
>gi|308178003|ref|YP_003917409.1| pseudouridylate synthase [Arthrobacter arilaitensis Re117]
gi|307745466|emb|CBT76438.1| pseudouridylate synthase [Arthrobacter arilaitensis Re117]
Length = 321
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 106/256 (41%), Gaps = 40/256 (15%)
Query: 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR-----CYDIDWNSRIIAVTES 226
+ GK V+E +R+ D+I T H P R PR + ++ E
Sbjct: 59 VNGKKVQEG---YRLAANDKI----TLPAFHAQPTREPRIEVPPALLKRLRNTVVHEDED 111
Query: 227 HVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEY 285
+V+DKPAG V TDN F R L P L +H++D T G +VLA+T
Sbjct: 112 VLVIDKPAGIPVHKGTDNPAGVIEAF--RQLRPELPDLELSHRLDRDTSGLLVLAKTPSI 169
Query: 286 CSIFHRKIR--EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
H +R E ++++ YLAL + + +A R+V++
Sbjct: 170 LRYLHEMLRDREDEIERHYLALVAGSWNEDTAVIHTPLLRLADRMVADPTG------QRA 223
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY- 402
+ W VGK +I D ++L+TGR HQ+R L + G PI GD Y
Sbjct: 224 ETRVWVQQRVGKRATILD-------------VQLMTGRKHQIRVHLQSEGHPIAGDDRYG 270
Query: 403 ---MPAAIAQLSSPGL 415
+ + QL GL
Sbjct: 271 FAKFNSRVEQLGGRGL 286
>gi|56695430|ref|YP_165778.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
gi|56677167|gb|AAV93833.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
Length = 347
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG +V G + + G R H++D T G +VLART+E +
Sbjct: 101 IVLNKPAGLAVQGGSGQTRHVDGLSEALRFGNDENPRLVHRLDKDTSGVLVLARTREAAA 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC--QLEVMECKK 345
R + +K+Y AL G+ T Y+ I LV G + + E M
Sbjct: 161 RLTAAFRHRNTRKIYWALV-----AGVPTPYLGEIKTG--LVKAGGHGARGEGEKMNVVH 213
Query: 346 VPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ DAT G +A++ + A ++ +TGRTHQ+RA +A G PI+GD Y
Sbjct: 214 LSELDATPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGIGHPIIGDGKY 272
>gi|373487007|ref|ZP_09577677.1| pseudouridine synthase, RluA family [Holophaga foetida DSM 6591]
gi|372010474|gb|EHP11081.1| pseudouridine synthase, RluA family [Holophaga foetida DSM 6591]
Length = 287
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 38/252 (15%)
Query: 169 RSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPK-------RFPRCYDIDWNSRII 221
R +K V+ AQK R+ + V G +RV V P Y+ +W
Sbjct: 33 REVLKLGGVQVAQKRVRVA--SRTVAPGVEVRVAVDDSLGALPDFEVPVVYEDEW----- 85
Query: 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVV 278
+V++KPAG GT + LG P L H++D T G +V
Sbjct: 86 -----LLVVNKPAGMPTQGTQASDRHDLLAL----LGRQRPGQKLILCHRLDQGTSGVLV 136
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LA+ + R +E+ ++K+YLA P+ RPI RL + C+
Sbjct: 137 LAK--DKAGDLGRHFQERTLRKVYLARVDRPVEA---VEVDRPIGRL-RLAKPARFGCEG 190
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+++E P P T+ + + ++ + Y + + TGRTHQ+R LA+ GAP+VG
Sbjct: 191 DLLE----PKPSQTLLRPAAPQEVAGLTPGYWVVAEPR--TGRTHQIRVHLASLGAPVVG 244
Query: 399 DSMYMPAAIAQL 410
D +Y A+ QL
Sbjct: 245 DGLYGGASSEQL 256
>gi|89900681|ref|YP_523152.1| pseudouridine synthase [Rhodoferax ferrireducens T118]
gi|89345418|gb|ABD69621.1| pseudouridine synthase [Rhodoferax ferrireducens T118]
Length = 302
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCY---------DIDWNSRIIAVTESHVVLDKPAG 235
R+ D + E G L H + R Y I ++ I+ E +V+DKP
Sbjct: 49 RMAQGDVVDEHGVQLAPHSAYQGHRRVYYYRAVPDEPRIPFDEVILFQDEQLIVVDKPHF 108
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
V + + E+ + LG+ T L H+ID T G V+ + E + +H +
Sbjct: 109 LPVMPSGGYLAETVLVRLKQKLGIDT-LVPVHRIDRDTAGLVMFSVQPETRAAYHALFSQ 167
Query: 296 KKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGK 355
+ VKK Y A+ AP G+ P+ R+V G ++ Q EV P TV +
Sbjct: 168 RSVKKTYEAI--APWREGLAL----PMTRQSRIVEAGHFMLQHEVS------GPPNTVTR 215
Query: 356 AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL 415
++ G +R +++ +TG+ HQ+R +AA G PI+GD +Y P L
Sbjct: 216 IEVLQVQGGLAR-----YQLQPVTGKRHQLRVHMAALGLPILGDGLY----------PTL 260
Query: 416 NPFGKCQKEY 425
P G+ E+
Sbjct: 261 TPEGQVDYEH 270
>gi|254876283|ref|ZP_05248993.1| ribosomal large subunit pseudouridine synthase C [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254842304|gb|EET20718.1| ribosomal large subunit pseudouridine synthase C [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 309
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 33/195 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNC 272
RI+ T+ ++V+DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYETDDYIVVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN-----IAPR 327
T GCV+LA+ F +E+KV K+Y AL + H+ ++ ++
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKERKVNKIYYAL--------VHGHWDEKVDAIDLPLSRT 193
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+G + +++ E K+ + + +++ G DY+ +IKL TGRTHQ+R
Sbjct: 194 ETKDGQRIVKVDKREGKR------ALTRILAVQKIG----DYSL-LEIKLETGRTHQIRV 242
Query: 388 QLAACGAPIVGDSMY 402
A G PIV D Y
Sbjct: 243 HTRAMGHPIVADKKY 257
>gi|419718834|ref|ZP_14246138.1| RNA pseudouridine synthase [Lachnoanaerobaculum saburreum F0468]
gi|383305003|gb|EIC96384.1| RNA pseudouridine synthase [Lachnoanaerobaculum saburreum F0468]
Length = 215
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+ KP G ++ EE + + LG + + H++D G +V + ++
Sbjct: 13 IVVIKPRGV-FSQSSSGFEEDMVSLIKKHLGKDSYIGVVHRLDKPVYGIMVYGKNKKSTG 71
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV---GIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
I ++R+K ++K+Y AL +P G + +++ N R+V + + V+E
Sbjct: 72 ILCNELRKKNIRKIYEALVEG-VPSENRGKLRDFIKKDNNISRVVEKDTEDAKEAVLE-- 128
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
Y I + + + Y KI LLTGR HQ+R Q AA G PI+GD Y
Sbjct: 129 ------------YEIIETKYSADRYITRLKINLLTGRHHQIRLQCAAHGFPILGDHKYNE 176
Query: 405 AAIAQ 409
I +
Sbjct: 177 RVIKE 181
>gi|167627177|ref|YP_001677677.1| lysozyme [Francisella philomiragia subsp. philomiragia ATCC 25017]
gi|167597178|gb|ABZ87176.1| Lysozyme [Francisella philomiragia subsp. philomiragia ATCC 25017]
Length = 309
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 33/195 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNC 272
RI+ T+ ++V+DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYETDDYIVVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN-----IAPR 327
T GCV+LA+ F +E+KV K+Y AL + H+ ++ ++
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKERKVNKIYYAL--------VHGHWDEKVDAIDLPLSRT 193
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+G + +++ E K+ + + +++ G DY+ +IKL TGRTHQ+R
Sbjct: 194 ETKDGQRIVKVDKREGKR------ALTRILAVQKIG----DYSL-LEIKLETGRTHQIRV 242
Query: 388 QLAACGAPIVGDSMY 402
A G PIV D Y
Sbjct: 243 HTRAMGHPIVADKKY 257
>gi|160942600|ref|ZP_02089845.1| hypothetical protein FAEPRAM212_00074 [Faecalibacterium prausnitzii
M21/2]
gi|158446079|gb|EDP23082.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
M21/2]
Length = 316
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 57/199 (28%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------------GLTTPLRTTHQIDNCTEG 275
++++KPAG +V G D+ T +RAL L TP H++D T G
Sbjct: 95 LIVNKPAGVAVDGPEDD------TLLNRALLYLNKQGEYKENDLYTP-ALCHRLDTGTSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V++A+T E +F I+ ++V+K YL +T + RP+ P + G YL
Sbjct: 148 LVIIAKTPEAEELFLSAIKNREVQKTYLCVT-----------FGRPM---PPDATLGGYL 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDC--GWPSRDYAYE----------CKIKLLTGRTH 383
+ DA G +ED G + YE K++L+TGRTH
Sbjct: 194 LK------------DADRGIVKIVEDKQPGAKEVETRYETIAVSGRLALLKVQLITGRTH 241
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+RA +A+ G PI+GDS Y
Sbjct: 242 QIRAHMASIGCPILGDSKY 260
>gi|108759583|ref|YP_629678.1| RluA family pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108463463|gb|ABF88648.1| pseudouridine synthase, RluA family [Myxococcus xanthus DK 1622]
Length = 310
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 117/314 (37%), Gaps = 69/314 (21%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKE 159
RVE +V G V + EL LP L+ GAVY A
Sbjct: 7 RVEGALV--GKAVARAVADELGLPEPGARGLVEVGAVYVA-------------------- 44
Query: 160 VTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIV--EAGTYLRVHVHPKRFPRCYDIDWN 217
GK R+A V +V E G P P + +
Sbjct: 45 --------------GKRSRDANARLTAGQVVTVVLEEGGQSPLSEAPPA--PELRVLYED 88
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+ +IAV DKPAG S T + +S LG P H++D T G
Sbjct: 89 ADVIAV-------DKPAGVSAQPTEGRVGDSLVDLVGAKLG--RPAGLVHRLDRETSGVT 139
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
V +T E S + RE + +K Y+A T LP P++ P W +
Sbjct: 140 VFGKTAEATSALAAEFREGRARKRYVAATGPGLPPSGTVDL--PLSKDPSRPGR-WRATR 196
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAP 395
VP ++ D S A+ C ++LL TGRTHQ+RA L A GAP
Sbjct: 197 ----AANGVP----------ALTDFHTLSSGPAF-CVVELLPHTGRTHQLRAHLTALGAP 241
Query: 396 IVGDSMYMPAAIAQ 409
I+GD+ Y AA A+
Sbjct: 242 ILGDARYGGAARAE 255
>gi|315652683|ref|ZP_07905658.1| RluA family pseudouridine synthase [Lachnoanaerobaculum saburreum
DSM 3986]
gi|315485061|gb|EFU75468.1| RluA family pseudouridine synthase [Lachnoanaerobaculum saburreum
DSM 3986]
Length = 215
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+ KP G ++ EE + + LG + + H++D G +V + ++
Sbjct: 13 IVVIKPRGV-FSQSSSGFEEDMVSLIKKHLGKDSYIGVVHRLDKPVYGIMVYGKNKKATG 71
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV---GIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
I ++R+K ++K+Y AL +P G + +++ N R+V + + V+E
Sbjct: 72 ILCNELRKKNIRKIYEALVEG-VPSENRGKLRDFIKKDNNISRVVEKDTEDAKEAVLE-- 128
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
Y I + + + Y KI LLTGR HQ+R Q AA G PI+GD Y
Sbjct: 129 ------------YEIIETKYSADRYITRLKINLLTGRHHQIRLQCAAHGFPILGDHKYNE 176
Query: 405 AAIAQ 409
I +
Sbjct: 177 RVIKE 181
>gi|372278301|ref|ZP_09514337.1| ribosomal large subunit pseudouridine synthase C [Oceanicola sp.
S124]
Length = 350
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 205 PKRFPRCYDIDWNSRIIAV--TESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
P+ PR D D AV + H++ L+KP G V G + + G
Sbjct: 75 PESGPRILDADVKMMQAAVLWKDDHIIALNKPPGLPVQGGSKQTRHVDGLSEALKFGYDE 134
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
R H++D T G ++LART+E + R ++ +K+Y AL G+ YM
Sbjct: 135 KPRLVHRLDKDTSGLLLLARTREAAAKLTAAFRSRETRKIYWALV-----AGVPHPYMGT 189
Query: 322 INI----APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCG--WPSRDYAYECKI 375
I AP S G + E M C ++T G ++ D W A +
Sbjct: 190 IKFGLVKAPGHGSGG----EGEKMICVHPRDIESTPGAKRAVSDYSVLWRLGQRAAWVGL 245
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMY 402
+TGRTHQ+RA +A G P++GD Y
Sbjct: 246 VPVTGRTHQLRAHMAEIGHPMIGDGKY 272
>gi|195434112|ref|XP_002065047.1| GK15252 [Drosophila willistoni]
gi|194161132|gb|EDW76033.1| GK15252 [Drosophila willistoni]
Length = 532
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RII + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 217 RIIHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKD-LRTIHRLDRLTSGLLL 275
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
R ++IR+++V+K Y+ L P GI+ N + +VS +C++
Sbjct: 276 FGRNANKARELEQQIRQRQVQKEYVCLVEGKFPDGIIE-----CNESIEVVSYKIGVCRV 330
Query: 339 --EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ +CK + VG + S+ C K LTGR HQ+R L G PI
Sbjct: 331 SPKGKDCKTTFQRLSNVGDS-SLVLC-------------KPLTGRMHQIRVHLQYLGYPI 376
Query: 397 VGDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
V D +Y L G + G+ ++ SD
Sbjct: 377 VNDPLYNHEVFGPLKGRGGDFGGRSDEQLISD 408
>gi|195384880|ref|XP_002051140.1| GJ14588 [Drosophila virilis]
gi|194147597|gb|EDW63295.1| GJ14588 [Drosophila virilis]
Length = 552
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 96/233 (41%), Gaps = 25/233 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + E +V++KPA V + ++ L LRT H+ID T G ++
Sbjct: 228 IVHMDEDILVVNKPASIPVHPCGRYRHNTVIFILAKEFNLKN-LRTIHRIDRLTSGLLLF 286
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL- 338
R E ++IR ++V+K Y+ P GI+ PI + VS +C++
Sbjct: 287 GRNSEKARQMEQQIRNRQVQKEYICCVEGQFPDGII-ECNEPIEV----VSYKIGVCKVS 341
Query: 339 -EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ +CK A G YSI C K LTGR HQ+R L G PIV
Sbjct: 342 PKGKDCKTTFKRIAQAGD-YSIVQC-------------KPLTGRMHQIRVHLQYLGYPIV 387
Query: 398 GDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAI 450
D +Y L G + GK + +D W+ G++ VAI
Sbjct: 388 NDPLYNHEVFGPLKGRGGDTGGKSDDQLINDLIAIHNAENWL---GIDEEVAI 437
>gi|366163177|ref|ZP_09462932.1| RluA family pseudouridine synthase [Acetivibrio cellulolyticus CD2]
Length = 322
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTES---HVVLDKPAGTSVGGTTDNI 245
+D+I+E + + K F Y+ D N I+ + H D+ T + T I
Sbjct: 64 IDEILEGKSISEPTDYFKAFTVIYE-DKNLLIVNKKQGIPVHPDKDQAENTLIDLVTAYI 122
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
E T S+ G + L H++D T G +++A+ E + KI+ K+VKK Y L
Sbjct: 123 REKEVT--SKTSGFSPAL--CHRLDRNTGGLIIIAKNNEALKVMLEKIKNKEVKKYYQCL 178
Query: 306 TTAPL--PVGIMTHYMRPINIAPRL-VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDC 362
+ P GI+ Y+ R+ +++ LE++ T K SI D
Sbjct: 179 VRGKMEKPQGILKAYLEKDERKSRVYINDYKTRNSLEII----------TKYKTLSIID- 227
Query: 363 GWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ D A +++L+TGRTHQ+RA ++ G PIVGD Y
Sbjct: 228 NITADDSASLLEVELVTGRTHQIRAHMSYIGHPIVGDGKY 267
>gi|338533727|ref|YP_004667061.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
gi|337259823|gb|AEI65983.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
Length = 316
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 102/239 (42%), Gaps = 42/239 (17%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG-- 235
R A+K +T AG ++ V V + D D+ ++ +S V +DKPAG
Sbjct: 49 RPAKKGLTLT-------AGQHIAVEVEEESREAVPDADFPLTVLHEDDSLVFVDKPAGRP 101
Query: 236 -----TSVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ GT N E + A+ +R GL H++D T G VV ART++
Sbjct: 102 SHPLQSGETGTVANALVARYPECAQASVDAREGGLC------HRLDVETSGVVVAARTRD 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ + V K YLAL T PL P+ PR + ++E
Sbjct: 156 AWNAVREAFGSRAVDKRYLALVTGPL--ADEGDIDLPLRHHPR------HPDRVE----- 202
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P P ++ SR + ++K+LTG HQVRA LA GAPIVGDS+Y
Sbjct: 203 --PAPSGAADAREAVSKFTVLSRSGEFSVVEVKILTGVLHQVRAHLAGVGAPIVGDSLY 259
>gi|296446414|ref|ZP_06888358.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
gi|296256049|gb|EFH03132.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
Length = 229
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
SR++ +V+DKPAG V GG DN+E+ F + GL P H++D
Sbjct: 3 SRLLYRDGLMLVVDKPAGLPVHRGPRGG--DNLEDH---FDALRFGLPRPPALAHRLDRD 57
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA-PRLVS- 330
T GC+VL R ++ + R+ +++K Y A+ G I++A RL S
Sbjct: 58 TSGCLVLGRHRKALERLGKLFRDGRIEKTYWAVVE-----GAPADDAGEIDMALGRLDST 112
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
GW++ + + W + + E RD A+ ++K TGRTHQ+R +
Sbjct: 113 RGWWMRPDPLGLPAQTHW--RALARGQDTE-----GRDIAF-LELKPRTGRTHQLRVHMQ 164
Query: 391 ACGAPIVGDSMY 402
A G PI+GD +Y
Sbjct: 165 AMGWPILGDPVY 176
>gi|374852556|dbj|BAL55487.1| ribosomal large subunit pseudouridine synthase D [uncultured
candidate division OP1 bacterium]
gi|374857372|dbj|BAL60225.1| ribosomal large subunit pseudouridine synthase D [uncultured
candidate division OP1 bacterium]
Length = 240
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 228 VVLDKPAGTSVGGTTDNIEE----SCATFASRALGLTTPLR--TTHQIDNCTEGCVVLAR 281
++++KPAG + G ++ E + A R+ G+ + + H++D T G VLA+
Sbjct: 14 LIVNKPAGVLMHGDRRHVGEPTLLAWALEHVRSSGVASDFQPAFVHRLDKETSGVAVLAK 73
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPL-PVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
T++ +R+++ KK++K YLAL + P G + +++ ++ + W + V
Sbjct: 74 TKDAVRALNRQLKLKKIQKEYLALVVGEIDPQGSIR-----LHLQKQMDHKRWLALMVPV 128
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
D +E W S ++Y TGRTHQVRA AA G PIVGD
Sbjct: 129 RRGGIYAQTDYK-----RLELFQWGSEKFSYVMAYPR-TGRTHQVRAHCAAVGCPIVGDD 182
Query: 401 MYMPAAIAQ 409
+Y A + +
Sbjct: 183 LYGNAELNE 191
>gi|397906677|ref|ZP_10507456.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Caloramator australicus RC3]
gi|397160266|emb|CCJ34793.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Caloramator australicus RC3]
Length = 321
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D TEG V+ A+ E + + IRE +KK Y+AL + G Y+
Sbjct: 142 NRLDRNTEGLVIYAKNYEALKLLNEAIREGGIKKYYIALIKGKIEDGTYRAYLSKDKKNN 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+++ + + + K++ K ++E G S E +I L+TGR+HQ+R
Sbjct: 202 KVI-----ISNNKTRDSKEIET------KIKTLETVGAFS-----EVEIDLITGRSHQIR 245
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
A L++ G PI+GD Y +L+S N FG
Sbjct: 246 AHLSSLGNPIIGDPKY---GHRKLNSMFFNKFG 275
>gi|313115842|ref|ZP_07801276.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310621840|gb|EFQ05361.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 298
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 57/199 (28%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------------GLTTPLRTTHQIDNCTEG 275
V+++KPAG +V G D+ T +R L L TP H++D T G
Sbjct: 77 VIVNKPAGLAVDGPEDD------TLLNRTLLYLNQQGEYKENDLYTPA-LCHRLDTGTSG 129
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V++A+T E +F I+ ++VKK YL +T + RP+ P + G YL
Sbjct: 130 LVIVAKTPEAEELFLAAIKNREVKKTYLCVT-----------FGRPM---PPDATLGGYL 175
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDC--GWPSRDYAYE----------CKIKLLTGRTH 383
+ DA G +E+ G + YE K++L+TGRTH
Sbjct: 176 LK------------DADRGIVKIVEEKQPGAKEVETRYETIAVSGRLALLKVQLITGRTH 223
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+RA +A+ G PI+GDS Y
Sbjct: 224 QIRAHMASIGCPILGDSKY 242
>gi|366052468|ref|ZP_09450190.1| pseudouridylate synthase [Lactobacillus suebicus KCTC 3549]
Length = 302
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 212 YDIDWNSRIIAVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL-RTTHQ 268
Y ID + + + E+ +V++KPAG + FA+ L + + H+
Sbjct: 79 YLIDNHQSVQVLFENRDLMVVNKPAGIKTHPNWQGETGTLMNFAAAYLSQSNQVPYMVHR 138
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINIAP 326
ID T G V++A+ I R I K++K+ YLA+T LP G+++ PI P
Sbjct: 139 IDQQTSGAVIIAKNPVVVPILDRLISSKQIKRQYLAITDGTLPQIAGVIS---APIGRDP 195
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ +K T +A + SR +A ++ L TGRTHQ+R
Sbjct: 196 D--------------DKRKRKVNGDTPQQALTEYKVISQSRQHAL-VRLNLQTGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
L + GAPIVGD +Y
Sbjct: 241 VHLKSLGAPIVGDPLY 256
>gi|406878936|gb|EKD27704.1| hypothetical protein ACD_79C00616G0002 [uncultured bacterium]
Length = 232
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCVVLARTQEYC 286
V++KPAG +V + +++E + ++ LGL R H++D T G +++A+ +E
Sbjct: 14 VIEKPAGITVNRSENDLENTLEDWSQDKLGLKLLERAGIVHRLDKETSGLIIIAKDEESL 73
Query: 287 SIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
++ E++VKK Y AL L G +T PI+ P W + +
Sbjct: 74 HKLQQQFAEREVKKKYSALVHGLLKGTNGSLT-VSAPISRLP------WNRRKFGI---- 122
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
VP V + ++ ++DY Y + K TGRTHQ+R L G PIV D +Y
Sbjct: 123 -VPDGREAVTEIAILDYYERKNKDYTY-IEAKPQTGRTHQIRVHLKYLGHPIVADPLY 178
>gi|288958958|ref|YP_003449299.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288911266|dbj|BAI72755.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 354
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ ++KPAG +V GGT + A R G P + H++D T G ++LART
Sbjct: 128 IAINKPAGLAVQGGTGTSKHLDAMLDALRFDGNERP-KLVHRLDKDTSGVLLLARTTFAA 186
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
S R V+K+Y A+T VG+ T Y I++A L EG + V E K+
Sbjct: 187 SKLTELFRGSAVRKIYWAVT-----VGVPTPYQGKIDLA--LAKEGGPHGE-RVAENKEE 238
Query: 347 PWPDATVGKAYSI-EDCG--------WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
TV YS+ E+ G WP LTGRTHQ+R +AA G PI+
Sbjct: 239 GKRAVTV---YSVQENVGKQAAFVAMWP------------LTGRTHQLRVHMAAVGTPIL 283
Query: 398 GDSMY 402
GD Y
Sbjct: 284 GDGKY 288
>gi|257439373|ref|ZP_05615128.1| ribosomal large subunit pseudouridine synthase C [Faecalibacterium
prausnitzii A2-165]
gi|257198248|gb|EEU96532.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
A2-165]
Length = 316
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 57/199 (28%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------------GLTTPLRTTHQIDNCTEG 275
+V++KPAG +V G D+ T +RAL L TP H++D T G
Sbjct: 95 LVVNKPAGLAVDGPEDD------TLLNRALLYLNQQGEYKENDLYTP-ALCHRLDTGTSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V++A+T E +F I+ ++VKK YL +T + RP P + G YL
Sbjct: 148 LVIIAKTPEAEQLFLEVIKNREVKKTYLCVT-----------FGRP---TPPDGTLGGYL 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDY--AYE----------CKIKLLTGRTH 383
+ DA G + D ++D YE K++L+TGRTH
Sbjct: 194 LK------------DADRGIVKIVPDKQPGAKDVETQYETVAVSGRLALLKVRLITGRTH 241
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+RA +A+ G PI+GDS Y
Sbjct: 242 QIRAHMASIGCPILGDSKY 260
>gi|374292582|ref|YP_005039617.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
gi|357424521|emb|CBS87400.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
Length = 354
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ ++KPAG +V GGT + A R G P + H++D T G ++LART
Sbjct: 128 IAINKPAGLAVQGGTGTSKHLDAMLDALRFDGNERP-KLVHRLDKDTSGVLLLARTTFAA 186
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
S R V+K+Y A+T VG+ T Y I++A L EG + V E K+
Sbjct: 187 SKLTELFRGSAVRKIYWAVT-----VGVPTPYQGKIDLA--LAKEGGPHGE-RVAENKEE 238
Query: 347 PWPDATVGKAYSI-EDCG--------WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
TV YS+ E+ G WP LTGRTHQ+R +AA G PI+
Sbjct: 239 GKRAVTV---YSVQENVGKQAAFVAMWP------------LTGRTHQLRVHMAAVGTPIL 283
Query: 398 GDSMY 402
GD Y
Sbjct: 284 GDGKY 288
>gi|120611810|ref|YP_971488.1| ribosomal large subunit pseudouridine synthase A [Acidovorax
citrulli AAC00-1]
gi|120590274|gb|ABM33714.1| ribosomal large subunit pseudouridine synthase A [Acidovorax
citrulli AAC00-1]
Length = 239
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G VV+AR + ++V K Y+A+ AP P G + R I++
Sbjct: 65 VHRLDQATSGIVVMARHAQAQRALGDAFAARQVHKRYVAVVHAPRPAGDGAAW-REIDMP 123
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGK---AYSIEDCG-WPSRDYAYECKIKLLTGR 381
++ W L V+ P A++ + A + G WP+ D ++ +TGR
Sbjct: 124 ---IAADWERRPLRVVVPHGAPGGKASLTRWRPAVPGDGAGTWPAADGTLRVLLEPVTGR 180
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
THQ+R +AA G PI+GD++Y A+ L+
Sbjct: 181 THQLRVHMAAVGQPILGDTLYALPAVQALA 210
>gi|334144241|ref|YP_004537397.1| pseudouridine synthase Rlu family protein [Thioalkalimicrobium
cyclicum ALM1]
gi|333965152|gb|AEG31918.1| pseudouridine synthase, RluA family [Thioalkalimicrobium cyclicum
ALM1]
Length = 320
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 20/192 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + +V++KP+G +V G + + A L + H++D T G ++L
Sbjct: 94 ILFEDDDLIVINKPSGMAVHGGS-GVSWGLIELVRNARPLAKRVELVHRLDRDTSGAIIL 152
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT--HYMRPINIAPRLVSEGWYLCQ 337
A+ H++IRE +V KLY L P +M H +R + G +
Sbjct: 153 AKKMSVLRDLHQQIREHQVTKLYWTLVKGRWPKALMKVEHPLRKFTL-----PSGERRVE 207
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ P ++ + D G A ++KL TGRTHQ+R AA G PI
Sbjct: 208 VH-------PAGKPSLSFVRLLVDLG-----QASLIEVKLATGRTHQIRVHCAANGHPIA 255
Query: 398 GDSMYMPAAIAQ 409
GD Y A Q
Sbjct: 256 GDDKYGDAEFDQ 267
>gi|421770464|ref|ZP_16207159.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|421772414|ref|ZP_16209070.1| pseudouridine synthase [Lactobacillus rhamnosus LRHMDP3]
gi|411181984|gb|EKS49141.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|411183982|gb|EKS51117.1| pseudouridine synthase [Lactobacillus rhamnosus LRHMDP3]
Length = 300
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLPAHGWIVLPIG 186
Query: 314 IMT-HYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ T YMR R+VSE GK E +A
Sbjct: 187 VSTGFYMR------RVVSEN---------------------GKPSVTEYQTLAQNSHAAA 219
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ L TGRTHQ+R AA G P+ GD +Y
Sbjct: 220 VLVTLHTGRTHQIRVHFAAIGHPLFGDDLY 249
>gi|384921230|ref|ZP_10021218.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
gi|384464864|gb|EIE49421.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
Length = 352
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 16/206 (7%)
Query: 205 PKRFPR--CYDIDWNSRIIAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
P+ PR D++ + + HV+ ++KPAG G + + + G+
Sbjct: 80 PRTPPRVNAEDVELIQSCVLWKDDHVIAINKPAGLPTQGGSGQLRHVDGMADALRFGMDE 139
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
R H++D T G ++LART+E +R K+ +K+Y A+ G+ T Y+
Sbjct: 140 KPRLVHRLDKDTSGVLLLARTREAAQALTAALRHKQTRKIYWAVV-----AGVPTPYLGE 194
Query: 322 IN---IAPRLVSEGWYLCQLEVMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIK 376
I + R +G + E M C T G +A+++ + A ++
Sbjct: 195 IRYGLVKARGHGKG---GEAEKMVCVHPRDIGTTEGAKRAHTLYATLYRVASRASWVALE 251
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMY 402
LTGRTHQ+RA +A G PI+GD Y
Sbjct: 252 PLTGRTHQLRAHMAEIGHPIIGDGKY 277
>gi|229551713|ref|ZP_04440438.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus rhamnosus
LMS2-1]
gi|258539108|ref|YP_003173607.1| pseudouridine synthase [Lactobacillus rhamnosus Lc 705]
gi|385834766|ref|YP_005872540.1| RluA family pseudouridine synthase [Lactobacillus rhamnosus ATCC
8530]
gi|229314918|gb|EEN80891.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus rhamnosus
LMS2-1]
gi|257150784|emb|CAR89756.1| Pseudouridine synthase [Lactobacillus rhamnosus Lc 705]
gi|355394257|gb|AER63687.1| pseudouridine synthase, RluA family protein [Lactobacillus
rhamnosus ATCC 8530]
Length = 300
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGWIILPIG 186
Query: 314 IMT-HYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ T YMR R+VSE GK E +A
Sbjct: 187 VSTGFYMR------RVVSE---------------------TGKPSVTEYQTLAQNSHAAA 219
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ L TGRTHQ+R AA G P+ GD +Y
Sbjct: 220 VLVTLHTGRTHQIRVHFAAIGHPLFGDDLY 249
>gi|418070160|ref|ZP_12707435.1| pseudouridine synthase [Lactobacillus rhamnosus R0011]
gi|423080100|ref|ZP_17068766.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|357539580|gb|EHJ23597.1| pseudouridine synthase [Lactobacillus rhamnosus R0011]
gi|357543904|gb|EHJ25911.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
Length = 300
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLPAHGWIILPIG 186
Query: 314 IMT-HYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ T YMR R+VSE GK E +A
Sbjct: 187 VSTGFYMR------RVVSE---------------------TGKPSVTEYQTLAQNSHAAA 219
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ L TGRTHQ+R AA G P+ GD +Y
Sbjct: 220 VLVTLHTGRTHQIRVHFAAIGHPLFGDDLY 249
>gi|258507862|ref|YP_003170613.1| pseudouridine synthase [Lactobacillus rhamnosus GG]
gi|385827545|ref|YP_005865317.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|257147789|emb|CAR86762.1| Pseudouridine synthase [Lactobacillus rhamnosus GG]
gi|259649190|dbj|BAI41352.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
Length = 300
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGWIVLPIG 186
Query: 314 IMT-HYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ T YMR R+VSE GK E +A
Sbjct: 187 VSTGFYMR------RVVSE---------------------TGKPSVTEYQTLAQNSHAAA 219
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ L TGRTHQ+R AA G P+ GD +Y
Sbjct: 220 VLVTLHTGRTHQIRVHFAAIGHPLFGDDLY 249
>gi|333914135|ref|YP_004487867.1| pseudouridine synthase [Delftia sp. Cs1-4]
gi|333744335|gb|AEF89512.1| pseudouridine synthase [Delftia sp. Cs1-4]
Length = 244
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKP+G ++ C + RAL H++D T G VV+AR+
Sbjct: 41 LVLDKPSGLLCVPGRGPDKQDC--LSGRALQRWPDALVVHRLDQATSGLVVMARSLASQR 98
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ +++V K Y+A+ A P + I++ ++ W L +++ +
Sbjct: 99 LLSEAFAQRRVHKRYVAVV-AGRPAAQQADAWQSIDLP---IAADWERRPLRIIDALQGK 154
Query: 348 WPDATVGKAYS--IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPA 405
P T+ +A S E G P+ +++ +TGRTHQ+R +AA G PI+GD++Y A
Sbjct: 155 -PSQTLWRAMSSATEGQGAPT----TRVQLQPVTGRTHQLRVHMAALGHPILGDALYADA 209
Query: 406 AIAQLS 411
A+ LS
Sbjct: 210 AVQALS 215
>gi|254455970|ref|ZP_05069399.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082972|gb|EDZ60398.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter sp. HTCC7211]
Length = 292
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II E+ +VL+K +G SV G T + + FA + T + H++D T G
Sbjct: 77 DQIIDNNENFIVLNKSSGISVQGGTKSKKNLVDIFAKSEIFQGTKPYSVHRLDKDTSGVF 136
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
++A+T++ + R +KV K YLA+ L S W
Sbjct: 137 IMAKTRQSAQLLTSLFRLRKVHKTYLAICHGELNKD----------------SGEWNDDL 180
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ KK+ T+ Y + D A ++K +TGR HQ+R QL A G PI
Sbjct: 181 IRYDGEKKIIEKAKTI---YRVLDKNSE----ASLVELKPITGRKHQLRKQLYALGQPIF 233
Query: 398 GDSMYMPAAIAQLSSPGLNP 417
GD Y + SS GLN
Sbjct: 234 GDIKYKLSN----SSRGLNK 249
>gi|254466117|ref|ZP_05079528.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
gi|206687025|gb|EDZ47507.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
Length = 348
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 193 VEAGTYLRV------HVHPKRFPRCYDI-DWNSRIIAV-----TESHVVLDKPAGTSVGG 240
VEAG +RV + P PR I D ++++I + +VL+KPAG +V G
Sbjct: 56 VEAGQVVRVPPLADSDLKPAE-PRAMKISDADAKMIQSCVIYRDDDVIVLNKPAGLAVQG 114
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
+ + + GL + H+ID T G +VLAR ++ R K +K
Sbjct: 115 GSGTTKHVDGLAEALKFGLEEKPKLVHRIDKDTSGVLVLARNRKAAQGLTAAFRHKNTRK 174
Query: 301 LYLALTTAPLPVGIMTHYMRPINIAPR--LVSEGWYLCQLEVMECKKVPWPDATVGKAYS 358
+Y AL A +P + + AP EG + + + P +A++
Sbjct: 175 IYWALV-AGVPTPYLGEIKNGLVKAPGHGKSGEGEKMINVHPRDIDDTP----GAKRAHT 229
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ + A ++ +TGRTHQ+RA ++ G PI GD Y
Sbjct: 230 LYATLYRVASRAAWVAMEPITGRTHQLRAHMSGMGHPIAGDGKY 273
>gi|108757756|ref|YP_630767.1| RluA family pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108461636|gb|ABF86821.1| pseudouridine synthase, RluA family [Myxococcus xanthus DK 1622]
Length = 316
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 101/244 (41%), Gaps = 52/244 (21%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG-- 235
R A+K +T AG ++ V V + D D+ ++ +S V +DKPAG
Sbjct: 49 RPAKKGLTLT-------AGQHIAVEVEEESREAVPDADFPLTVLHEDDSLVFVDKPAGRP 101
Query: 236 -----TSVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ GT N E + A+ +R GL H++D T G VV ART++
Sbjct: 102 SHPLQSGETGTVANALVARYPECALASLDAREGGLC------HRLDVETSGVVVAARTRD 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+ + V K YLAL T PL + + H P + P
Sbjct: 156 AWNAVREAFGSRAVDKRYLALVTGPLTDEGDIDLPLRHHPRHPDRVEP------------ 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
P+ A S S +++ ++K+LTG HQVRA LA GAPIVG
Sbjct: 204 -------APYGAEDARDAVSKFTVLSRSGEFSV-VEVKILTGVLHQVRAHLAGIGAPIVG 255
Query: 399 DSMY 402
DS+Y
Sbjct: 256 DSLY 259
>gi|254449547|ref|ZP_05062984.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
gi|198263953|gb|EDY88223.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
Length = 347
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I + +VL+KPAG G + + + G R H++D T G +VL
Sbjct: 92 VIYKDDHVIVLNKPAGLPTQGGSKQLRHVDGMAEALRFGYDERPRLVHRLDKDTSGVLVL 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
ART+ R + +K+Y AL P+P + +I LV +G + +
Sbjct: 152 ARTRMAAKSLTEAFRHRNTEKIYWALVAGVPIP--------KLGSIKYGLVKQGGHGGKG 203
Query: 339 --EVMECKKVPWPDATVGKAYSIEDCGWPSR--DYAYECKIKLLTGRTHQVRAQLAACGA 394
E M+C D T G ++ + + D + +TGRTHQ+RA +A G
Sbjct: 204 DNERMKCVHPKDVDKTFGAKRALTNYTVLTSLADRTAWVALTPVTGRTHQLRAHIAEIGH 263
Query: 395 PIVGDSMYMPAAIAQLSSPG 414
PIVGD Y AA+ +PG
Sbjct: 264 PIVGDGKYGAAAVQ--DNPG 281
>gi|407788345|ref|ZP_11135477.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
gi|407197626|gb|EKE67680.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
Length = 348
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 9/178 (5%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG G + + GL R H++D T G ++LART +
Sbjct: 102 IVLNKPAGLPTQGGSKQTRHVDGLAEALKFGLEEKPRLVHRLDKDTSGVLILARTPAMAT 161
Query: 288 IFHRKIREKKVKKLYLALTTA-PLP-VG-IMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
R K +K+Y AL P+P +G I M+ R E M
Sbjct: 162 KLTEAFRHKNTRKIYWALVAGVPVPYLGEIKYGLMKAGGHGARGEGEKMIAIHPRDMNAN 221
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
PDA +A+++ + A ++ +TGRTHQ+RA +A G PI+GD Y
Sbjct: 222 ----PDAK--RAHTLYATLYRVGSRASWVAMEPITGRTHQLRAHMAEIGHPIIGDGKY 273
>gi|311032387|ref|ZP_07710477.1| pseudouridine synthase, RluA family protein [Bacillus sp. m3-13]
Length = 307
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 36/200 (18%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDN 271
+ + +II TE +V++K AG ++D S + + G+++ +R H++D
Sbjct: 76 EMDIKIIYETEHLLVINKEAGMDTHPSSDQDFRSLSNGVAHYFNNNGISSKVRHIHRLDQ 135
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPI 322
T G ++ A+ +I R + E+KVK+ YLAL T P+G H+
Sbjct: 136 DTSGAILFAKHAISGAILDRMLEERKVKRTYLALVEGIVKTPEGTIDKPIGKDRHHASRR 195
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
++P Q + K V K Y E ++ L TGRT
Sbjct: 196 RVSPN--------GQKAITHYKVV--------KTYPKEQLTL--------VELTLDTGRT 231
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R +++ G PI GD +Y
Sbjct: 232 HQIRVHMSSIGHPIYGDKLY 251
>gi|452994430|emb|CCQ93949.1| Uncharacterized RNA pseudouridine synthase YhcT [Clostridium
ultunense Esp]
Length = 311
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +++DKPAG SV T + + A + GL T +R H++D T G +++A+
Sbjct: 93 EHLLIVDKPAGISVHPTEVGQKGTLANALAYHYFQEGLRTKVRHVHRLDRETSGLLLVAK 152
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT-HYMRPINIAPRLVSEGWYLCQLEV 340
SI ++RE++VK++YLA+ LP T H+ PI + + + V
Sbjct: 153 HALAHSILDEELRERRVKRIYLAIIAGTLPKKEETIHF--PIG------RDRHHPTRRRV 204
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
+ + V + YS +++L TGRTHQ+R L+ G P++GD
Sbjct: 205 SKTGERAVTHYQVVEEYSQGSL----------LRLELETGRTHQIRVHLSHLGHPLLGDP 254
Query: 401 MY 402
+Y
Sbjct: 255 LY 256
>gi|397642204|gb|EJK75085.1| hypothetical protein THAOC_03203 [Thalassiosira oceanica]
Length = 739
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 140/366 (38%), Gaps = 104/366 (28%)
Query: 182 KTFRIT--HVDQIVEAGTYLRVHVHPKRFPRCYDIDW---------NSRIIAVTE----- 225
K R+T ++ V+ G YLRVH P+RF DW +++ V E
Sbjct: 213 KPIRLTVGALNMTVQGGDYLRVHFDPRRFCVANSYDWLAQDGTMGSDNKPGVVVERNDKI 272
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRAL---------------------------G 258
+++L+KP G + DN E+ A R L G
Sbjct: 273 GYMILNKPRGVPIHARVDNHLENVAARIGRMLWQERKEDVSLQGQSIKPKDNDNKRRRRG 332
Query: 259 LTTP------LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK---------------- 296
T + T ++D T G V +A + + + F +R+K
Sbjct: 333 KTEKKQHAIYVATPQRLDQNTSGLVAVATKKCFAAYFAELLRKKTSAQLSQGGSSRSDDC 392
Query: 297 KVKKLY-------------LALTTAPLP-VGIMTHYMRPINIAPRLV---------SEGW 333
KV K Y +A L GIM HY+ P AP+ S W
Sbjct: 393 KVHKAYRCLVCLSPGAESSMASEVKKLKDYGIMRHYLEPSIRAPKRFLADIPHDAESAAW 452
Query: 334 YLCQLEVMECKKV-----PWPDATVGKA-YSIEDCGWPSRDYAY-ECKIKLLTGRTHQVR 386
L + +V P T+ + + I G P A E +I+LLTGRTHQ+R
Sbjct: 453 AESLLTITRVGQVCTVVGNEPSETLSENLWGIH--GRPQGCIAVCELEIELLTGRTHQIR 510
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKE--YASDDDKEMAVIEWISQHGM 444
QLAA G P+VGD Y A+AQ + GK +K + S D E ++ S +
Sbjct: 511 GQLAAEGFPLVGDVQY-GGAVAQPT----EDLGKPEKRDGFLSLGDSEELCLQCCSLEFL 565
Query: 445 EPSVAI 450
EP +A+
Sbjct: 566 EPHLAV 571
>gi|374603453|ref|ZP_09676432.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
gi|374390924|gb|EHQ62267.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
Length = 295
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+ DQI AG LR+H+ P+ D + I+ ++ +V KPAG +V T
Sbjct: 44 RMLAQDQIRTAGDRLRMHLFPEEAMTTEPADEPAEILYEDDAVLVAYKPAGMAVHAATAE 103
Query: 245 IEESCATFASRA------LGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
E+ A+ A G + +R H++D T G V++A+ ++ +R K +
Sbjct: 104 QEQRRASLAHAVACHYAWTGQSLRVRHIHRLDTDTTGPVLIAKHALPHAVLDADMRSKAI 163
Query: 299 KKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWP 349
++ Y A+ T P+G H+ ++P P
Sbjct: 164 RRSYAAIVHGCPRMRAGTIDAPIGKDRHHPSRRRVSP-------------------TGSP 204
Query: 350 DATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
T Y++E G R+ + K++L TGRTHQ+R ++ G P+ GD++Y
Sbjct: 205 AVT---HYAVEQAG---RELSL-VKLRLETGRTHQIRVHMSHIGHPLAGDTLY 250
>gi|78485049|ref|YP_390974.1| pseudouridine synthase RluD [Thiomicrospira crunogena XCL-2]
gi|78363335|gb|ABB41300.1| ribosomal large subunit pseudouridine synthase C [Thiomicrospira
crunogena XCL-2]
Length = 312
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP+G +V G + I+ L L H+ID T GC++LA+
Sbjct: 96 LVINKPSGIAVHGGS-GIQWGLIEIVRALRPLAKRLELVHRIDRDTSGCILLAKKASVLK 154
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
H +IRE K+ K YLAL P G LE ++ +
Sbjct: 155 ALHEQIRENKMTKEYLALVAHHWPKG------------------------LEKIDLPLLK 190
Query: 348 WPDATVGKAYSIEDCGWPSRDYA------YECK---IKLLTGRTHQVRAQLAACGAPIVG 398
+ + + D G PS Y EC ++L TGRTHQ+R + G P+VG
Sbjct: 191 NTLKSGERVVKVSDEGKPSVSYFRVVERYQECDLVAVRLKTGRTHQIRVHALSQGCPLVG 250
Query: 399 DSMY 402
D Y
Sbjct: 251 DDKY 254
>gi|441498667|ref|ZP_20980861.1| RNA pseudouridylate synthase, group 1 [Fulvivirga imtechensis AK7]
gi|441437618|gb|ELR70968.1| RNA pseudouridylate synthase, group 1 [Fulvivirga imtechensis AK7]
Length = 226
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTDN---IEESCATFASRALGL--TTPLRTTHQIDNCTE 274
I ++H+ +++KPAG V G + E + L H++D
Sbjct: 7 IVYEDNHLLIVNKPAGLLVQGDKSGDITLAEQAKLYVKEKYDKPGDVFLGVVHRLDRPVS 66
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
G V+LART + ++ +E+++ K+Y A+TT RP N A LV W
Sbjct: 67 GAVILARTSKALERMNKLFKERRIDKIYWAITTH-----------RPPNTAGELVH--WL 113
Query: 335 LCQLEVMECKKVPWPDATVGKA-YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
++ + + KA S + G Y E IKL+TGR HQ+RAQLA G
Sbjct: 114 KKNTKINKTTAFNKEVSGSQKAVLSYKLIGRIGEHYLLE--IKLMTGRPHQIRAQLAKMG 171
Query: 394 APIVGDSMY 402
PI+GD Y
Sbjct: 172 CPILGDVKY 180
>gi|407802982|ref|ZP_11149821.1| RNA pseudouridine synthase [Alcanivorax sp. W11-5]
gi|407023142|gb|EKE34890.1| RNA pseudouridine synthase [Alcanivorax sp. W11-5]
Length = 239
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 27/193 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+IA VVLDKPAG SV + E+ A + PL H++D T G ++L
Sbjct: 6 LIAEQPDFVVLDKPAGVSV-----HSEDGAGVVAQLSALRDEPLWLVHRLDRDTSGALLL 60
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
AR +E + ++V K YL ++T G++T M+ R W L +
Sbjct: 61 ARNREAAAALGTLFAARQVTKFYLGISTRRPQKKTGLITGDMQ------RSRDGNWRLAR 114
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
E + A G D ++ TGRTHQ+R + A GAP++
Sbjct: 115 -EQTRPALTSFVSAAAG-------------DGLRAVLMRPWTGRTHQLRVAMKALGAPLL 160
Query: 398 GDSMYMPAAIAQL 410
GDS Y AA +L
Sbjct: 161 GDSRYGGAASDRL 173
>gi|260428027|ref|ZP_05782006.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
gi|260422519|gb|EEX15770.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
Length = 351
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + GL R H++D T G ++LART+
Sbjct: 101 DDHIIALNKPPGLPVQGGSKTTRHVDGLSEALRFGLDEKPRLVHRLDKDTSGVLLLARTR 160
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI----APRLVSEGWYLCQLE 339
IR K+ +K+Y A+ G+ T Y+ I AP S G + E
Sbjct: 161 AVAQALTAAIRHKQTRKIYWAVV-----AGVPTPYLGEIRYALVKAPGHGSSG----EGE 211
Query: 340 VMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
M C D T G +A+++ + A ++ +TGRTHQ+RA +A G PI+
Sbjct: 212 KMICVHPRDVDRTEGAKRAHTLYATLYRVAGRASWVALEPITGRTHQLRAHMAEIGHPII 271
Query: 398 GDSMY 402
GD Y
Sbjct: 272 GDGKY 276
>gi|158426220|ref|YP_001527512.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158333109|dbj|BAF90594.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 319
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKPAG V E GL H++D T GC+VL R + +
Sbjct: 94 LVLDKPAGLPVHPGPKGGETLHDHLNGLRFGLPRAPELAHRLDKDTSGCLVLGRHGKALA 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ +R E + K Y+A+T P +P+ A R GW++ +
Sbjct: 154 LLNRLFAEGQADKTYVAVTRG-APAEETGRIDQPL--AKRSPHRGWWMQAV--------- 201
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P T G ++ D +R + +TGRTHQ+RA L+ G PI+GDS+Y
Sbjct: 202 -PKGTPGGLEAVTDWRVLARTEGLAVMALSPVTGRTHQLRAHLSHIGFPILGDSIY 256
>gi|372324245|ref|ZP_09518834.1| ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
gi|366983053|gb|EHN58452.1| ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
Length = 303
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 33/186 (17%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------GLTTPLRTTHQIDNCTEGCVVLAR 281
+++DKPAG + + N ++ F AL GL H+ID T G V++A
Sbjct: 95 IIVDKPAGMKMHPHSPNETDTLLNFVQAALAGRRSHGLPASAYMVHRIDTDTSGLVLIAT 154
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
++ ++ I +K +K+ YLA + L P G++T PI P+ L
Sbjct: 155 NPLAAAVLNQLIAKKIIKRTYLAWVSGHLSEPNGVIT---LPIAQDPK---------NLY 202
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVRAQLAACGAPI 396
V P T W Y+ +I+L TGR+HQ+R LAA G P+
Sbjct: 203 VRIVDPSGQPALT----------RWVKMHVVYQNTLLRIQLATGRSHQIRVHLAAIGHPL 252
Query: 397 VGDSMY 402
+GD +Y
Sbjct: 253 IGDRLY 258
>gi|344344883|ref|ZP_08775742.1| pseudouridine synthase, RluA family [Marichromatium purpuratum 984]
gi|343803577|gb|EGV21484.1| pseudouridine synthase, RluA family [Marichromatium purpuratum 984]
Length = 333
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
P R P + ++ +V+DKP+G +V G + + ES R L
Sbjct: 92 PARAPEGWLARLEGAVLYEDNRLLVIDKPSGLAVHGGSGLSFGLIESL-----RQLHPGR 146
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
L H++D T GC+V+ + + HR +RE ++K YLAL LP MT P
Sbjct: 147 ELELVHRLDRDTSGCLVVTKRRSALRELHRMMREDGIEKRYLALIGGELPRAEMT-VDAP 205
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ ++ G + ++ +E K A+ + + SR A + L+TGR
Sbjct: 206 LR--KNVLRGGERMVSVDPVEGK------ASRTRFRRLRRLRAGSR-VATLVEATLVTGR 256
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R A GAP+ GD Y
Sbjct: 257 THQIRVHAAHLGAPLAGDPKY 277
>gi|188589626|ref|YP_001921981.1| RluA family pseudouridine synthase [Clostridium botulinum E3 str.
Alaska E43]
gi|251780373|ref|ZP_04823293.1| pseudouridine synthase, RluA family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188499907|gb|ACD53043.1| pseudouridine synthase, RluA family [Clostridium botulinum E3 str.
Alaska E43]
gi|243084688|gb|EES50578.1| pseudouridine synthase, RluA family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 322
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPIN 323
+++D T G V+ +T E + IRE +V+K Y+AL + G+ T Y+ + N
Sbjct: 140 NRLDRNTSGLVMFGKTFEGLKSINETIREDRVRKYYVALVKGKVQDGLHTGYILKNQDTN 199
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATV--GKAYSIEDCGWPSRDYAYECKIKLLTGR 381
I+ + + EV + KK+ T AYS+ +I L+TGR
Sbjct: 200 ISK--------VYEKEVPDSKKIAMEVTTTQTNGAYSL-------------LEINLITGR 238
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+HQ+RA LA G+PI+GD Y +L+S N +G
Sbjct: 239 SHQIRAHLAHLGSPIIGDDKY---GDRKLNSFFKNKYG 273
>gi|227432332|ref|ZP_03914325.1| 23S rRNA pseudouridylate synthase RluD [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351938|gb|EEJ42171.1| 23S rRNA pseudouridylate synthase RluD [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 299
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 28/233 (12%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGITTVPGHADRLHTLVNQVKGHLETIKADDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++++ V+K YLA P GI+ + IN AP +G ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGILAYDHGDIN-APIGRMDGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ++ K++L TGRTHQ+R A G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYEDDEQNMT------RVKVQLHTGRTHQIRVHFANIGHP 246
Query: 396 IVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS---DDDKEMAVIE 437
+VGD++Y A L L +PF + +E+ + DD K + IE
Sbjct: 247 LVGDTLYGGPAWHGLQRQALHAYHMKFYDPFIEEYREFNTPLPDDLKTLRDIE 299
>gi|399890050|ref|ZP_10775927.1| RluA family pseudouridine synthase [Clostridium arbusti SL206]
Length = 317
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 39/242 (16%)
Query: 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCA 250
IVE Y+ K+F R +D N ++ E+ ++++K G V ++N E +
Sbjct: 56 DIVET-YYISSKPEKKKFVR---VDNNFKVTYEDENMLLVEKWPGVLVHSNSENGEPTLT 111
Query: 251 TFASRAL---GLTTPLRTT-------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
+A L G P + +++D T G VV + E + IRE+ VKK
Sbjct: 112 DYALSYLYDKGDYEPEKEVTFTPAPCNRLDRNTSGIVVFGKNFEALKSLNEMIRERTVKK 171
Query: 301 LYLALTTAPLPVGIMTHYM---RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAY 357
Y AL L + Y+ NI+ SE +P +
Sbjct: 172 YYTALVKGKLRDSVYEGYIYKNEDANISKVFDSE--------------MPNTKKIAMEVK 217
Query: 358 SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNP 417
+I+ CG S +I L+TGR+HQ+RA L+ PIVGDS Y +L+S N
Sbjct: 218 TIQTCGTFSL-----IEIDLITGRSHQLRAHLSHLNHPIVGDSKY---GDKKLNSFFNNK 269
Query: 418 FG 419
+G
Sbjct: 270 YG 271
>gi|238018437|ref|ZP_04598863.1| hypothetical protein VEIDISOL_00263 [Veillonella dispar ATCC 17748]
gi|237864908|gb|EEP66198.1| hypothetical protein VEIDISOL_00263 [Veillonella dispar ATCC 17748]
Length = 289
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 51/270 (18%)
Query: 151 PEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR 210
P ++ V K V + LS R + + R+ H + ++ G L + + P+
Sbjct: 11 PTELTVSKYVKERFSLSSRDIQMMFRKKRVKVNSRVAHSQRSLKKGDVLTLEL-PQDKDY 69
Query: 211 CYDIDWNSRIIAVTESH-VVLDK-------PAGTSVGGTTDNIEESCATFASRALGLTTP 262
D++ + ++H +V+DK PAG + GT N A + ++ G+
Sbjct: 70 GVDVEKGPITVLYEDAHTLVVDKAPFMLVHPAGQTKSGTLSNY---VAGYYAKK-GVVHK 125
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV-GIMTHYMRP 321
+R H++D T GC++ +T+E + +++ ++ ++Y L + G++ P
Sbjct: 126 VRPVHRLDRDTSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGRINSDGVVD---AP 182
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR-DY---AYE----- 372
I + P V + ++V I++ G P++ +Y +E
Sbjct: 183 IGVDP-------------VFDNRRV------------IDEFGQPAQTEYTVLGHEGEHTL 217
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K KLLTGRTHQ+R + G PIVGD+MY
Sbjct: 218 LKFKLLTGRTHQIRVHMEHIGHPIVGDAMY 247
>gi|288940468|ref|YP_003442708.1| RluA family pseudouridine synthase [Allochromatium vinosum DSM 180]
gi|288895840|gb|ADC61676.1| pseudouridine synthase, RluA family [Allochromatium vinosum DSM
180]
Length = 346
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
P R P II E +V+DKP+G +V G + + ES R L
Sbjct: 107 PARAPEAQLARLEGAIIHEDERLLVIDKPSGLAVHGGSGLSYGLIESL-----RQLRPGR 161
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
L H++D T GC+V+ + + H IRE + K YLAL LP +
Sbjct: 162 ELELVHRLDRDTSGCLVVCKRRSALRELHALIREGGLDKRYLALILGELP---RAELLVD 218
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ ++S G L +++ K+ + K ++I+ + +L+TGR
Sbjct: 219 APLKKNVLSSGERLVRVDAQGGKEARTRFRRL-KRFAIDGQALTL------VEAELITGR 271
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQ 409
THQ+R A G P+ GD Y A Q
Sbjct: 272 THQIRVHAAHLGTPLAGDDKYGDEAANQ 299
>gi|219682262|ref|YP_002468646.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|384226150|ref|YP_005617313.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|384226664|ref|YP_005618415.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
gi|384227208|ref|YP_005618958.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|414562706|ref|YP_005617897.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|219621995|gb|ACL30151.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|311086084|gb|ADP66166.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086657|gb|ADP66738.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087242|gb|ADP67322.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087761|gb|ADP67840.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 314
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
FP + + +RI+ ++++KP+G +V G + + + + L L H
Sbjct: 82 FPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGS-GLNFGVIEYFRKLRPLNKFLELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
+ID T G ++LA+ + H ++REKK+KK Y+AL P I +
Sbjct: 141 RIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWPDHI------------K 188
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL---------- 377
+SE Q + + K I+ G PS Y ++ K K
Sbjct: 189 KISEPLLKIQFKNKQ------------KMVLIDKKGKPSETY-FQIKKKFSSSTLLSIIP 235
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R G PI D Y
Sbjct: 236 KTGRTHQIRVHALHAGHPIFFDKRY 260
>gi|199599112|ref|ZP_03212517.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|199590005|gb|EDY98106.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
Length = 300
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
++D T G +V A+ S+ R++ + K YLAL T+ + + PI
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGWIILPIG 186
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
VS G+Y+ ++ V+E GK E A + L TGRTH
Sbjct: 187 -----VSTGFYMRRV-VIET----------GKPSVTEYQTLAQNSDAAAVLVTLHTGRTH 230
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R AA G P+ GD +Y
Sbjct: 231 QIRVHFAAIGHPLFGDDLY 249
>gi|15616954|ref|NP_240167.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|219681707|ref|YP_002468093.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
gi|257471403|ref|ZP_05635402.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|11387076|sp|P57430.1|RLUC_BUCAI RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|25322330|pir||E84970 pseudouridylate synthase (EC 4.2.1.70) [imported] - Buchnera sp.
(strain APS)
gi|10039019|dbj|BAB13053.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|219624550|gb|ACL30705.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
Length = 314
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
FP + + +RI+ ++++KP+G +V G + + + + L L H
Sbjct: 82 FPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGS-GLNFGVIEYFRKLRPLNKFLELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
+ID T G ++LA+ + H ++REKK+KK Y+AL P I +
Sbjct: 141 RIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWPDHI------------K 188
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL---------- 377
+SE Q + + K I+ G PS Y ++ K K
Sbjct: 189 KISEPLLKIQFKNKQ------------KMVLIDKKGKPSETY-FQIKKKFSSSTLLSIIP 235
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R G PI D Y
Sbjct: 236 KTGRTHQIRVHALHAGHPIFFDKRY 260
>gi|331002782|ref|ZP_08326296.1| hypothetical protein HMPREF0491_01158 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413271|gb|EGG92639.1| hypothetical protein HMPREF0491_01158 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 216
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ E +V KP G S ++ E+ + + LG + H++D G ++
Sbjct: 4 KILYEDEDIIVAVKPRGIS-SQSSSGFEDDMVSLLKKHLGKDAYIGVIHRLDKPVYGIIL 62
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV---GIMTHYMRPINIAPRLVSEGWYL 335
+T+ I ++R+K ++K Y AL LP G + Y++ Y
Sbjct: 63 YGKTKVATEILSNELRKKNIEKTYEALVEG-LPENKEGELRDYLKK------------YD 109
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ + K P +V K YS+E+ + +I LLTGR HQ+R Q AA G P
Sbjct: 110 NNISKVVDKNTPGAKESVLK-YSVEESYQRDDTFITRLRINLLTGRNHQIRLQCAAHGFP 168
Query: 396 IVGDSMY 402
+ GD Y
Sbjct: 169 LFGDFKY 175
>gi|399518033|ref|ZP_10759565.1| Similar to ribosomal large subunit pseudouridine synthase D,
Bacillus subtilis YjbO type [Leuconostoc
pseudomesenteroides 4882]
gi|398647074|emb|CCJ67592.1| Similar to ribosomal large subunit pseudouridine synthase D,
Bacillus subtilis YjbO type [Leuconostoc
pseudomesenteroides 4882]
Length = 300
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGVTTVPGHADRLHTLVNQVKGHLEQIEAQDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++++ V+K YLA P GI++ IN AP EG ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGIISDDHGDIN-APIGRVEGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ED P K++L TGRTHQ+R A G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYD-EDGQHP----MTRVKVQLHTGRTHQIRVHFANIGHP 247
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 248 LVGDDLY 254
>gi|260432477|ref|ZP_05786448.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416305|gb|EEX09564.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 22/205 (10%)
Query: 209 PRCYDIDWN--SRIIAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
PR D D + + HV+ L+KP G V G + + G R
Sbjct: 79 PRVTDADAKMIQSCVIYRDDHVLALNKPHGLPVQGGSGQARHVDGLAEALRFGYDENPRL 138
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +++ART+E R + +K+Y AL G+ T Y+ I
Sbjct: 139 VHRLDKDTSGVLLMARTREAAKGLTAAFRHRNTRKIYWALV-----AGVPTPYLGEIKTG 193
Query: 326 PRLV--------SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 377
LV EG + + + E P +A+++ + A ++
Sbjct: 194 --LVKAPGHGKQGEGEKMIAVHLNEIDSTP----GAKRAHTLYATLFRVASRASWVAMEP 247
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
+TGRTHQ+RA +AA G PI+GD Y
Sbjct: 248 VTGRTHQLRAHMAAIGHPIIGDGKY 272
>gi|438000116|ref|YP_007183849.1| 23S rRNA pseudouridine955/2504/2580 synthase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813048|ref|YP_007449501.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339350|gb|AFZ83772.1| 23S rRNA pseudouridine955/2504/2580 synthase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779017|gb|AGF49897.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 309
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 53/212 (25%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD----NIEESCATFASRALGLT 260
P++F Y+ D+ +V++KP+G +V G + IE+ + +
Sbjct: 79 PRKFSVAYEDDY----------LLVINKPSGVAVHGGSGISFGVIEQVREYYKENSF--- 125
Query: 261 TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR 320
L H++D T G ++LA+ + H K+R++ + K Y+AL
Sbjct: 126 --LELVHRLDRDTSGLLILAKKRSTLLAMHSKLRDRLIDKRYVALV-------------- 169
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS-------RDYAYEC 373
G +L Q + ++ W T + ++ G + R+Y C
Sbjct: 170 ----------HGRWLNQRQHIKSSLSKWITKTGERRVKVDPNGQEAHTAVNLIRNYGDSC 219
Query: 374 ---KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+++L +GRTHQ+R L++ G PIVGD+ Y
Sbjct: 220 SLVEVELYSGRTHQIRVHLSSIGFPIVGDTKY 251
>gi|315656560|ref|ZP_07909447.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315492515|gb|EFU82119.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 304
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 47/231 (20%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+ AG L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLA-AGNLLEIDIPEPTGYVPEVTRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP------RLVSEGW-YLCQLEVMECKKVPWPDA 351
+Y AL T + PVG + PI AP +VS G + +V+E P A
Sbjct: 168 IYTALATGGVKPPVGTIDA---PIGRAPGREFKMAVVSGGKPAVTHYDVIE----ELPGA 220
Query: 352 TVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
T+ K++L TGRTHQ+R LAA G P+VGD+ Y
Sbjct: 221 TL-------------------LKVQLETGRTHQIRVHLAAIGHPLVGDTEY 252
>gi|451812287|ref|YP_007448741.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778189|gb|AGF49137.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 321
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
ID N I V +SH ++ P + GT N + L H++D T
Sbjct: 91 IDENQDWIIVNKSHGLVTHPGSGNWNGTLLN----AILYKYPELSAVPRAGIVHRLDKNT 146
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR----PINIAPRLV 329
G +V+AR + + F R ++ + + ++Y+A+ LP T M P+N V
Sbjct: 147 SGLMVIARNELSQTYFIRNMQARNIMRIYVAIVHGHLP-SFRTINMDIGRDPVNRTKMSV 205
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+ + V C P + +Y + + KL TGRTHQ+R L
Sbjct: 206 TTNAIAARSAVTHCN--PIRKGILNGSYKVT-----------QVICKLETGRTHQIRVHL 252
Query: 390 AACGAPIVGDSMYMPAAIAQ----------LSSPGLNPFGKCQKEYASDDDKEMAVIEWI 439
++ G P+VGD++Y I LS PGL+ GK Q + + + +++ I
Sbjct: 253 SSIGHPVVGDTLYGGKGILGTDRQMLHACFLSFPGLD--GKEQNFFIKPSEDILNILQNI 310
Query: 440 SQ 441
+
Sbjct: 311 NN 312
>gi|156503277|ref|YP_001429342.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|290954356|ref|ZP_06558977.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica URFT1]
gi|423051448|ref|YP_007009882.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica F92]
gi|156253880|gb|ABU62386.1| pseudouridine synthase, Rlu family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421952170|gb|AFX71419.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica F92]
Length = 309
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNCT 273
RI+ + ++++DKP+G +V GG+ N + R L +R H++D T
Sbjct: 88 QRILYENDDYIIVDKPSGMTVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKET 142
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 143 SGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKIDL 188
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAAC 392
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 189 PLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKAM 248
Query: 393 GAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 249 GHPIVADKKYGFATKDQL 266
>gi|385793628|ref|YP_005826604.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678953|gb|AEE88082.1| Ribosomal large subunit pseudouridine synthase C [Francisella cf.
novicida Fx1]
Length = 309
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKID 187
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAA 391
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 188 LPLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKA 247
Query: 392 CGAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 248 MGHPIVADKKYGFATKDQL 266
>gi|84499811|ref|ZP_00998099.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
gi|84392955|gb|EAQ05166.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
Length = 347
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 193 VEAGTYLRV-----HVHPKRFPRCYDIDWNSRIIAV----TESHVV-LDKPAGT-SVGGT 241
+EAG +RV P+ PR + ++R+I ++ H+V L+KPAG + GG+
Sbjct: 56 LEAGQVVRVPPLPESAAPEPAPRDAVSEADARLIRDCVLWSDDHIVALNKPAGLPTQGGS 115
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+ + A G P R H++D T G ++LART+ +R K+ +K+
Sbjct: 116 KQSRHVDGLSQALVPAGAEKP-RLVHRLDKDTSGVLLLARTRVAAQGLTAALRHKQTRKI 174
Query: 302 YLALTTAPLPVGIMTHYMRPINI----APRLVSEGWYLCQLEVMECKKVPWPDATVGKAY 357
Y AL G+ T Y+ I AP G + V + P A +A+
Sbjct: 175 YWALVA-----GVPTPYLGEIRYGLVKAPGHGKGGEGEKMIAVHPAEVEGTPGAK--RAH 227
Query: 358 SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++ + A ++ LTGRTHQ+RA LA G PI+GD Y
Sbjct: 228 TLYATLYRVASRASWVALEPLTGRTHQLRAHLAEIGHPIIGDGKY 272
>gi|315655527|ref|ZP_07908426.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii ATCC 51333]
gi|315490182|gb|EFU79808.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii ATCC 51333]
Length = 304
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 47/231 (20%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+V G L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLV-VGNLLEIDIPEPTGYVPEVTRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP------RLVSEGW-YLCQLEVMECKKVPWPDA 351
+Y AL T + PVG + PI AP +VS G + +V+E P A
Sbjct: 168 IYTALATGGVKPPVGTIDA---PIGRAPGREFKMAVVSGGKPAVTHYDVIE----ELPGA 220
Query: 352 TVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
T+ K++L TGRTHQ+R LAA G P+VGD+ Y
Sbjct: 221 TL-------------------LKVQLETGRTHQIRVHLAAIGHPLVGDTEY 252
>gi|54114079|gb|AAV29673.1| NT02FT1763 [synthetic construct]
Length = 309
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKID 187
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAA 391
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 188 LPLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKA 247
Query: 392 CGAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 248 MGHPIVADKKYGFATKDQL 266
>gi|381157162|ref|ZP_09866396.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
gi|380881025|gb|EIC23115.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
Length = 338
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 225 ESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
E +++DKP+G +V GG+ ++ A RA+ L H++D T GC+++++
Sbjct: 119 EGLILIDKPSGLAVHGGSGLSL---GLIEALRAMRPQQSLELVHRLDRETSGCLLISKKP 175
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
H+++RE +V+K Y AL LP P+ L+ G + +++ E
Sbjct: 176 AILRWLHQQLREGQVRKRYQALLVGGLPRE-RVDVRAPLR--KNLLRGGERVVRVDHAEG 232
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYM 403
K +A G + G+ D ++L TGRTHQ+R A GA + GD Y
Sbjct: 233 K-----EARTGFRRAETLAGFTLVD------VRLGTGRTHQIRVHAAHLGAAVAGDDKYG 281
Query: 404 PAAIAQ-LSSPGLN 416
A Q LSS GLN
Sbjct: 282 DATHNQHLSSLGLN 295
>gi|304389307|ref|ZP_07371272.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|304327425|gb|EFL94658.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
Length = 304
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 47/231 (20%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+ AG L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLA-AGNLLEIDIPEPTGYVPEATRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP------RLVSEGW-YLCQLEVMECKKVPWPDA 351
+Y AL T + PVG + PI AP +VS G + +++E P A
Sbjct: 168 IYTALATGKVKPPVGTIDA---PIGRAPGREFKMAVVSGGKPAVTHYDIIE----ELPGA 220
Query: 352 TVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
T+ K++L TGRTHQ+R LAA G P+VGD+ Y
Sbjct: 221 TL-------------------LKVQLETGRTHQIRVHLAAIGHPLVGDTEY 252
>gi|134301269|ref|YP_001121237.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis WY96-3418]
gi|421750987|ref|ZP_16188046.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis AS_713]
gi|421752843|ref|ZP_16189854.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 831]
gi|421756575|ref|ZP_16193479.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700103]
gi|421758440|ref|ZP_16195287.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70102010]
gi|424673678|ref|ZP_18110612.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70001275]
gi|134049046|gb|ABO46117.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis WY96-3418]
gi|409089205|gb|EKM89257.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 831]
gi|409089298|gb|EKM89349.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis AS_713]
gi|409092338|gb|EKM92314.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70102010]
gi|409093444|gb|EKM93389.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700103]
gi|417435673|gb|EKT90552.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70001275]
Length = 309
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKID 187
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAA 391
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 188 LPLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKA 247
Query: 392 CGAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 248 MGHPIVADKKYGFATKDQL 266
>gi|208780244|ref|ZP_03247586.1| pseudouridine synthase, RluA family [Francisella novicida FTG]
gi|208743893|gb|EDZ90195.1| pseudouridine synthase, RluA family [Francisella novicida FTG]
Length = 309
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKID 187
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAA 391
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 188 LPLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKA 247
Query: 392 CGAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 248 MGHPIVADKKYGFATKDQL 266
>gi|56707234|ref|YP_169130.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110669704|ref|YP_666261.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC198]
gi|118498217|ref|YP_899267.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida U112]
gi|194324401|ref|ZP_03058174.1| pseudouridine synthase, RluA family [Francisella novicida FTE]
gi|254369904|ref|ZP_04985913.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC022]
gi|254369919|ref|ZP_04985927.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC033]
gi|254375025|ref|ZP_04990505.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida GA99-3548]
gi|254874072|ref|ZP_05246782.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis MA00-2987]
gi|379716435|ref|YP_005304771.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TIGB03]
gi|379725118|ref|YP_005317304.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TI0902]
gi|385793807|ref|YP_005830213.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis NE061598]
gi|421754660|ref|ZP_16191627.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700075]
gi|56603726|emb|CAG44688.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110320037|emb|CAL08071.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC198]
gi|118424123|gb|ABK90513.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida U112]
gi|151568165|gb|EDN33819.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC033]
gi|151572743|gb|EDN38397.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida GA99-3548]
gi|157122874|gb|EDO66991.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC022]
gi|194321466|gb|EDX18951.1| pseudouridine synthase, RluA family [Francisella tularensis subsp.
novicida FTE]
gi|254840071|gb|EET18507.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282158342|gb|ADA77733.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis NE061598]
gi|377826567|gb|AFB79815.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TI0902]
gi|377828112|gb|AFB78191.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TIGB03]
gi|409090702|gb|EKM90714.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700075]
Length = 309
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKID 187
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAA 391
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 188 LPLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKA 247
Query: 392 CGAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 248 MGHPIVADKKYGFATKDQL 266
>gi|182417587|ref|ZP_02948909.1| pseudouridine synthase, RluA family [Clostridium butyricum 5521]
gi|237668273|ref|ZP_04528257.1| pseudouridine synthase, RluA family [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378542|gb|EDT76071.1| pseudouridine synthase, RluA family [Clostridium butyricum 5521]
gi|237656621|gb|EEP54177.1| pseudouridine synthase, RluA family [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 324
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 113/287 (39%), Gaps = 51/287 (17%)
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
PL+A +FK + + K E I ++ E T + V P
Sbjct: 26 PLSA------IFKALRKKDIRVNGKKQNEKYFLEEGDIVEIKYIQSKKEDKTQKFIKVDP 79
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALG------ 258
KR C++ E+ V+++K G V T DN E + + L
Sbjct: 80 KRMKICFE----------DENMVIVEKWPGILVHSDTNDNKEPTLTDYVLSYLNDKGDYL 129
Query: 259 ----LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
+T +++D T G ++ +T E + IRE +VKK Y L + G+
Sbjct: 130 PENEITFTPAACNRLDRNTSGIIMYGKTFEGLKCINEAIREDEVKKYYYTLAKGKVKSGL 189
Query: 315 MTHYMRP---INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY 371
Y+ NI+ + EV KK+ D V +E G Y++
Sbjct: 190 YEGYIVKNPETNIST--------VYDKEVKNSKKIAM-DVNV-----VETNGA----YSF 231
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL--SSPGLN 416
+I L+TGR+HQ+RA LA G PI+GD+ Y + S GLN
Sbjct: 232 -VEINLITGRSHQIRAHLAHVGNPIIGDNKYGDKKLNSFFESKYGLN 277
>gi|333398423|ref|ZP_08480236.1| ribosomal large subunit pseudouridine synthase A [Leuconostoc
gelidum KCTC 3527]
gi|406600756|ref|YP_006746102.1| ribosomal large subunit pseudouridine synthase A [Leuconostoc
gelidum JB7]
gi|406372291|gb|AFS41216.1| ribosomal large subunit pseudouridine synthase A [Leuconostoc
gelidum JB7]
Length = 306
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 220 IIAVTESHVVLDKPAGTSVG--GTTDN---IEESCATFASRAL---GLTTPLRTTHQIDN 271
I+ +E V+++KPAG + T+N + A F+ R L G+ H++D
Sbjct: 88 IVFESEDFVIVNKPAGMKMHPHSLTENDTLLNYLAADFSERRLVSAGVAARPYMVHRLDR 147
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G V++A+ I +R + +KK+K+ YLA G MT IN AP
Sbjct: 148 ETSGAVIVAKNPIIVPILNRMLADKKIKRTYLAWVN-----GKMTGNSGTIN-AP----- 196
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVRAQ 388
+++ + +K G + W ++ +++L TGR HQ+R
Sbjct: 197 ----IGVDLDDDRK----RMVNGNDEQLAITHWTQVHTVFQKTLLRLQLETGRMHQIRVH 248
Query: 389 LAACGAPIVGDSMY 402
LAA G PI+GDS+Y
Sbjct: 249 LAAIGHPIIGDSLY 262
>gi|89257067|ref|YP_514429.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica LVS]
gi|115315423|ref|YP_764146.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica OSU18]
gi|254368306|ref|ZP_04984325.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica 257]
gi|422939322|ref|YP_007012469.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC200]
gi|89144898|emb|CAJ80243.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica LVS]
gi|115130322|gb|ABI83509.1| pseudouridylate synthase [Francisella tularensis subsp. holarctica
OSU18]
gi|134254115|gb|EBA53209.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica 257]
gi|407294473|gb|AFT93379.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC200]
Length = 309
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNCT 273
RI+ + ++++DKP+G +V GG+ N + R L +R H++D T
Sbjct: 88 QRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKET 142
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 143 SGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IKIDL 188
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAAC 392
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 189 PLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKAM 248
Query: 393 GAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 249 GHPIVADKKYGFATKDQL 266
>gi|254373560|ref|ZP_04989047.1| hypothetical protein FTCG_01516 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571285|gb|EDN36939.1| hypothetical protein FTCG_01516 [Francisella novicida GA99-3549]
Length = 309
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GCV+LA+ F +++KV K+Y A+ + H+ + I +
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI--------VHGHWDKKI------IRID 187
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAA 391
L + E + ++V D+ GK + +IKL TGRTHQ+R A
Sbjct: 188 LPLKRTETKDGQRVVKVDSKDGKQALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKA 247
Query: 392 CGAPIVGDSMYMPAAIAQL 410
G PIV D Y A QL
Sbjct: 248 MGHPIVADKKYGFATKDQL 266
>gi|347739549|ref|ZP_08870795.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
gi|346917122|gb|EGX99601.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
Length = 337
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG +V G T + A + H++D T GC+VLART +
Sbjct: 111 IVLNKPAGLAVQGGTGQNKHLDAMLDVLTFDGKERPKLVHRLDKDTSGCLVLARTSFAAT 170
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
R K+ +K Y A+T VG+ Y I+ A L + +++
Sbjct: 171 RLGGYFRGKEARKYYWAVT-----VGVPKQYQGKIDAA---------LAKEAGTRGERMA 216
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ +A ++ + A + LTGRTHQ+RA + A G PI+GD Y
Sbjct: 217 VDEDEGARAVTLYQVIENAHRQAAFVALWPLTGRTHQLRAHMVAIGTPILGDGKY 271
>gi|85817437|gb|EAQ38617.1| ribosomal large subunit pseudouridine synthase D [Dokdonia
donghaensis MED134]
Length = 229
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP----LRTTHQIDN 271
N +I +V++K +G V G T ++ S A+ P L H++D
Sbjct: 7 NLNVIYEDNHIIVVNKRSGDIVQGDKTGDLPLSEVVKKYIAVKYNKPGAVYLGVVHRLDR 66
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIAPRLV 329
T G V+ ART + ++ E++ KK Y AL P P G +TH+++ P+
Sbjct: 67 PTSGIVIFARTSKALPRLNKMFSERQTKKTYWALVKNPPPAESGTLTHFLKR---NPK-- 121
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
Y + EV + KK + K + Y +I L TGR HQ+RAQL
Sbjct: 122 QNKSYAHKHEVPDSKKAILDYRVIKKLKTF-----------YLLEIDLHTGRHHQIRAQL 170
Query: 390 AACGAPIVGDSMY 402
A G PI GD Y
Sbjct: 171 TAIGCPIKGDLKY 183
>gi|421858698|ref|ZP_16290961.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
gi|410831767|dbj|GAC41398.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
Length = 295
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 41/228 (17%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D+I AG LR+H+ P+ D + I+ ++ +V KPAG +V TT E+
Sbjct: 49 DKIQTAGDRLRMHLFPEEATTTKPADEPAEILYEDDAVLVAYKPAGMAVHATTAEQEKRR 108
Query: 250 ATFASRA------LGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
A A G + +R H++D T G V++A+ ++ +R K +++ Y
Sbjct: 109 AGLAHAVACHYEWTGQSLRVRHIHRLDTDTTGPVLIAKHALPHAVLDADMRSKVIRRSYA 168
Query: 304 ALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVG 354
A+ T P+G H+ ++P P T
Sbjct: 169 AIVHGCPHAREGTIHAPIGKDRHHSSRRRVSP-------------------TGSPAVT-- 207
Query: 355 KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
Y++E G R+ + K++L TGRTHQ+R ++ G P+ GD++Y
Sbjct: 208 -HYAVEQAG---RELSL-VKLQLETGRTHQIRVHMSHIGHPLAGDTLY 250
>gi|187934776|ref|YP_001887060.1| RluA family pseudouridine synthase [Clostridium botulinum B str.
Eklund 17B]
gi|187722929|gb|ACD24150.1| pseudouridine synthase, RluA family [Clostridium botulinum B str.
Eklund 17B]
Length = 322
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPIN 323
+++D T G V+ +T E + IRE +V+K Y+AL + G+ T Y+ + N
Sbjct: 140 NRLDRNTSGLVMFGKTFEGLKSINETIREDRVRKYYVALVKGKVQDGLHTGYILKNQDTN 199
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATV--GKAYSIEDCGWPSRDYAYECKIKLLTGR 381
I+ + + EV + KK+ T AYS+ +I L+TGR
Sbjct: 200 ISK--------VYEKEVPDSKKIAMEVTTTQTNGAYSL-------------LEINLITGR 238
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+HQ+RA L+ G+PI+GD Y +L+S N +G
Sbjct: 239 SHQIRAHLSHLGSPIIGDDKY---GDRKLNSFFKNKYG 273
>gi|116617792|ref|YP_818163.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116096639|gb|ABJ61790.1| Pseudouridylate synthase, 23S RNA-specific [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 299
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 28/233 (12%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGITTVPGHADRLHTLVNQVKGHLETIKADDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++++ V+K YLA P GI+ IN AP +G ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGILADDHGDIN-APIGRMDGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ++ K++L TGRTHQ+R A G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYEDDEQNMT------RVKVQLHTGRTHQIRVHFANIGHP 246
Query: 396 IVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS---DDDKEMAVIE 437
+VGD++Y A L L +PF + +E+ + DD K + IE
Sbjct: 247 LVGDTLYGGPAWHGLQRQALHAYHMKFYDPFIEEYREFNTPLPDDLKTLRDIE 299
>gi|195118760|ref|XP_002003904.1| GI18161 [Drosophila mojavensis]
gi|193914479|gb|EDW13346.1| GI18161 [Drosophila mojavensis]
Length = 545
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 22/211 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + + +V++KPA V + ++ L LRT H++D T G ++
Sbjct: 226 IVHIDDDILVVNKPASIPVHPCGRYRHNTVIFILAKEYNLKN-LRTIHRLDRLTSGLLLF 284
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL- 338
R E ++IR ++V+K Y+ P GI+ PI + VS +C++
Sbjct: 285 GRNSEKARQMEQQIRNRQVQKEYVCCVEGHFPDGII-ECNEPIEV----VSYKIGVCKVS 339
Query: 339 -EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ +C+ A G YSI C K LTGR HQ+R L G PIV
Sbjct: 340 KKGKDCQTTFKRIAQAGD-YSIVQC-------------KPLTGRMHQIRVHLQYLGYPIV 385
Query: 398 GDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y L G + GK + SD
Sbjct: 386 NDPLYNHEVFGPLKGRGGDTGGKSDDQLISD 416
>gi|121604183|ref|YP_981512.1| pseudouridine synthase [Polaromonas naphthalenivorans CJ2]
gi|120593152|gb|ABM36591.1| ribosomal large subunit pseudouridine synthase A [Polaromonas
naphthalenivorans CJ2]
Length = 233
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 219 RIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II +S +VL+KPAG +V G ++ ++ C + R L H++D T G +
Sbjct: 23 QIIHADDSLLVLNKPAGLLAVPGRGED-KQDC--LSRRVQSLYPDALIVHRLDMATSGLM 79
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
++ R + ++V K YLA+ +AP GW L
Sbjct: 80 LMGRGIAMQRALGQLFERREVYKRYLAVVDG--------------RLAPAPEPGGWGLID 125
Query: 338 LEVMECKKVPWP-------DATVGKAYSIEDCGWPSRDY---AYECKIKL--LTGRTHQV 385
L + V WP DA GK W S + A +++L LTGR+HQ+
Sbjct: 126 LPI----AVDWPRRPLRIIDAASGKPSQTR---WRSVAFDAAANSTRVELEPLTGRSHQL 178
Query: 386 RAQLAACGAPIVGDSMYMPAAI 407
R L A G PI+GD++Y P A+
Sbjct: 179 RVHLQALGHPILGDALYAPEAV 200
>gi|387825306|ref|YP_005824777.1| Ribosomal large subunit pseudouridine synthase [Francisella cf.
novicida 3523]
gi|332184772|gb|AEE27026.1| Ribosomal large subunit pseudouridine synthase [Francisella cf.
novicida 3523]
Length = 307
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDN--IEESCATFASRALGLTTPLRTTHQIDNCTE 274
RI+ + ++++DKP+G +V GG+ N + E +A L H++D T
Sbjct: 88 QRILYENDDYIIVDKPSGMAVHGGSGINSGLVERLRQLRPKA----RRLDLVHRLDKETS 143
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
GCV+LA+ F +++KV K+Y A+ I+T I++
Sbjct: 144 GCVILAKKHSSLVYFFDIFKQRKVDKIYYAIVHGHWDKKIIT-----IDLP--------- 189
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAACG 393
L + E + ++V D+ GK + +IKL TGRTHQ+R A G
Sbjct: 190 LKRTETKDGQRVVKVDSKDGKRALTRIISVRHLQGGFSLLEIKLETGRTHQIRVHTKAMG 249
Query: 394 APIVGDSMY 402
PIV D Y
Sbjct: 250 HPIVADKKY 258
>gi|302874505|ref|YP_003843138.1| RluA family pseudouridine synthase [Clostridium cellulovorans 743B]
gi|307690886|ref|ZP_07633332.1| pseudouridine synthase, RluA family protein [Clostridium
cellulovorans 743B]
gi|302577362|gb|ADL51374.1| pseudouridine synthase, RluA family [Clostridium cellulovorans
743B]
Length = 321
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 25/156 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPIN 323
+++D T G V+ +T E + +R+++++K Y+AL L G Y+ N
Sbjct: 141 NRLDRNTSGIVIFGKTFEGLKALNEMVRDRRIQKYYMALVQGKLKDGRYDAYISKDESQN 200
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
++ ++ +EG + ME K + TVG +YS+ D I+L+TGR+H
Sbjct: 201 LS-KIYNEGGADRKKISMEVKTLE----TVG-SYSLLD-------------IELITGRSH 241
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
Q+RA L+ G PIVGDS Y +L+S N +G
Sbjct: 242 QLRAHLSHLGNPIVGDSKY---GDKKLNSFFNNKYG 274
>gi|298292787|ref|YP_003694726.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296929298|gb|ADH90107.1| pseudouridine synthase [Starkeya novella DSM 506]
Length = 250
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+D +R++ +V+DKPAG +V E + GL H++D T
Sbjct: 9 LDIAARVLHRDGMMLVIDKPAGLAVHKGPKGGETLADHLDALRFGLPNAPELAHRLDKDT 68
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSE 331
GC+VL R ++ + + + V K Y+A+ P G + + ++ R +
Sbjct: 69 SGCLVLGRHRKALADLGKAFADGTVGKTYMAVVRGVPAEPRGRIE-----LKLSKRSPTR 123
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
GW++ + W G+ ++ + LTGRTHQ+R + A
Sbjct: 124 GWWMAVDPNGQEAISEWETIAAGEGLAV-------------LVLSPLTGRTHQLRVHMNA 170
Query: 392 CGAPIVGDSMY 402
G PI+GDS+Y
Sbjct: 171 IGHPILGDSIY 181
>gi|221056917|ref|XP_002259596.1| ribosomal large subunit pseudouridylate synthase [Plasmodium
knowlesi strain H]
gi|193809668|emb|CAQ40369.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium knowlesi strain H]
Length = 504
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N II E +V++KP + G D++ S T + L R Q+D T G
Sbjct: 65 NLSIIYENEFFLVVNKPYDIKLEKGKLDDVYPSVETLLRQKTNLDV-FRICGQLDYATSG 123
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+++A+ + C+I + I K++ K+YLA+ LP+G++ H PI+
Sbjct: 124 LLIIAKDKLSCNILNYNIESKRISKIYLAILYGHLPLGVL-HVNTPISKIKN-------- 174
Query: 336 CQLEVMECKKVPWPDATVGKAYSI----EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
++ C T YS+ + C ++ C+++ +TGR HQ+R
Sbjct: 175 -NFKMKLCYNYNDYYDTGKYCYSLIYPYKQCYLKNQKVTL-CELRTITGRRHQLRLHALC 232
Query: 392 CGAPIVGDSMYMPAAIAQLSSPG 414
G+ IVGD Y I+ G
Sbjct: 233 LGSGIVGDETYFEDMISNKYKIG 255
>gi|296111299|ref|YP_003621681.1| pseudouridylate synthase [Leuconostoc kimchii IMSNU 11154]
gi|339491430|ref|YP_004705935.1| pseudouridylate synthase [Leuconostoc sp. C2]
gi|295832831|gb|ADG40712.1| pseudouridylate synthase [Leuconostoc kimchii IMSNU 11154]
gi|338853102|gb|AEJ31312.1| pseudouridylate synthase [Leuconostoc sp. C2]
Length = 306
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEES-----CATFASRAL---GLTTPLRTTHQIDN 271
I+ + VV++KPAG + ++ +++ A F +R++ G+ H+ID
Sbjct: 88 IVFENDDLVVVNKPAGMKMHPHSETEDDTLLNYVAANFLARSVLSAGVPAKPYMVHRIDR 147
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLV 329
T G V++A+ I +R + EK +++ YLA + G++ PI I P
Sbjct: 148 ETSGAVIIAKNPVVVPILNRLLFEKNIQRTYLAWVDGNMSAKAGVID---APIGIDP--- 201
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVR 386
+ + V DA K + W Y+ +++L TGR HQ+R
Sbjct: 202 ---------QNNRKRLVDGIDAQSAKTH------WTRVHVVYQHTLLRLQLDTGRMHQIR 246
Query: 387 AQLAACGAPIVGDSMYMPAAI 407
LA+ G PIVGDS+Y I
Sbjct: 247 VHLASMGHPIVGDSLYASKVI 267
>gi|339497288|ref|ZP_08658264.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 270
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 28/233 (12%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 51 IIFENEHWLVVDKPYGITTVPGHADRLHTLVNQVKGHLETIKADDLVPHVVTRLDRDTSG 110
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++++ V+K YLA P GI+ IN AP +G ++
Sbjct: 111 IVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGILADDHGDIN-APIGRMDGDFI 164
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ++ K++L TGRTHQ+R A G P
Sbjct: 165 KR-EVRDDGKPSRTEYWVERRYEDDEQNMT------RVKVQLHTGRTHQIRVHFANIGHP 217
Query: 396 IVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS---DDDKEMAVIE 437
+VGD++Y A L L +PF + +E+ + DD K + IE
Sbjct: 218 LVGDTLYGGPAWHGLQRQALHAYHMKFYDPFIEEYREFNTPLPDDLKTLRDIE 270
>gi|227547691|ref|ZP_03977740.1| ribosomal pseudouridine synthase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227080217|gb|EEI18180.1| ribosomal pseudouridine synthase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 323
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 35/239 (14%)
Query: 190 DQIVEAGTYLRVHVHPK-RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
+Q+VE GT + + P P YDI+ + ++ +V+DKP + +I ES
Sbjct: 76 EQLVEPGTDVFFYRRPAPEKPVPYDIE----TVYEDDTILVVDKPPFLATMPRAAHITES 131
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
RA G L H++D T G ++L + +++ S + +V K Y A+
Sbjct: 132 ATVRLRRATG-NEDLTPAHRLDRMTSGLLLLTKQKQHRSAYQELFAAHQVHKRYEAIAED 190
Query: 309 PLPVGIMT------HYMRPINIAPRLVSEGWYLCQL-EVMECKKVPWPDATVGKAYSIED 361
+GI + H + V EG L V+E ++ P S+
Sbjct: 191 ---IGIESPTWWRHHIDKQHGEIASTVIEGREPNALTHVLEALRIDAP-----TMQSLHS 242
Query: 362 CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
+P Y E +TGRTHQ+R Q+ GAPI+GD +Y P +NPFG+
Sbjct: 243 VTFPLARYLLEP----VTGRTHQLRVQMNEAGAPILGDPVY----------PTVNPFGE 287
>gi|312795518|ref|YP_004028440.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
rhizoxinica HKI 454]
gi|312167293|emb|CBW74296.1| Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Burkholderia rhizoxinica HKI 454]
Length = 336
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 228 VVLDKPAGTSVGGTTDN----IEE-SCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+ LDKPAG +V G + IE+ A +R L L H++D T G ++LA+
Sbjct: 107 IALDKPAGIAVHGGSGVSFGVIEQMRAARPGARMLELV------HRLDRETSGVLLLAKK 160
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ H +IRE ++ K YLA P G+ P++ L ++G +++
Sbjct: 161 RAALVGLHEQIREGRLDKRYLACARGAWPADWGVRRAVKAPLH--KYLTADGERRVRVQ- 217
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
PD ++++ + DY + +L TGRTHQ+R LA G PIVGD
Sbjct: 218 --------PDGL--GSHTVFNLRQRLGDYLL-LEAELKTGRTHQIRVHLAHLGLPIVGDD 266
Query: 401 MYMPAAIAQ-LSSPGLNP 417
Y ++ + L+ PG+ P
Sbjct: 267 KYGDFSLNKNLARPGVRP 284
>gi|319943487|ref|ZP_08017769.1| ribosomal large subunit pseudouridine synthase C [Lautropia
mirabilis ATCC 51599]
gi|319743302|gb|EFV95707.1| ribosomal large subunit pseudouridine synthase C [Lautropia
mirabilis ATCC 51599]
Length = 343
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDN 271
D + RI+ E +V+DK G +V G + A R P L H++D
Sbjct: 100 DRHIRILFEDEHLLVVDKSEGLAVHGGSG----ISAGLIERLRATRPPGQFLELAHRLDR 155
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA----PLPVGIMTHYMRPINIAPR 327
T G +V+A+ + HR +VKK YLA+ P PV + +R + A
Sbjct: 156 DTSGLLVIAKRRSALLALHRMFAAGEVKKRYLAIVKGHWGRPRPVLVQFPLLRYLTPA-- 213
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCG----WPSRDYAYECKIKLLTGRTH 383
G +++V P AT + D G P EC+ LLTGRTH
Sbjct: 214 ----GERRVRVDVQG-----QPSATRFRRLQALDFGGTPGLPPHGALLECE--LLTGRTH 262
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R LA G PI+GD Y
Sbjct: 263 QIRVHLAHGGHPILGDEKY 281
>gi|126728208|ref|ZP_01744024.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
gi|126711173|gb|EBA10223.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
Length = 347
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 8/181 (4%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G + G + + G+ R H++D T G ++LART+
Sbjct: 97 DDHIIALNKPPGLATQGGSGQTRHVDGLSEALTFGMDEKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
IR ++ +K+Y AL G+ T Y+ I + E M C
Sbjct: 157 AVAKALTEAIRHREARKIYWALV-----AGVPTPYLGEIKYGLVKAPGHGKGGEAEKMRC 211
Query: 344 KKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
T G +A+++ + A ++ +TGRTHQ+RA +A G PI+GD
Sbjct: 212 VHPKEIATTEGAKRAHTLYATLYRVAGRASWVAMEPVTGRTHQLRAHMAEIGHPIIGDGK 271
Query: 402 Y 402
Y
Sbjct: 272 Y 272
>gi|255505168|ref|ZP_05344870.3| ribosomal large subunit pseudouridine synthase D/dephospho-CoA
kinase [Bryantella formatexigens DSM 14469]
gi|255269406|gb|EET62611.1| pseudouridine synthase, RluA family [Marvinbryantia formatexigens
DSM 14469]
Length = 272
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTT---DNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
II + +V KPAG +V + ++E + G P L H++D +G
Sbjct: 57 IIYEDKQLLVCRKPAGLAVQNASFGRMDLESMVRNYLMEKSGKPNPYLGVVHRLDQPVQG 116
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR--PINIAPRLVSE 331
+V A+T + ++++ ++ K YLA+ LP G + H+++ P R V E
Sbjct: 117 LLVFAKTPAAAAALSAQVQDGRMTKEYLAVVCGKLPEKEGELVHFLKKEPAGNCSRAVGE 176
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ + + + D G+A +IKL TGR HQ+R Q+ A
Sbjct: 177 KTPGAKRAELSYRVLAEAD---GRAL---------------VRIKLKTGRHHQIRVQMVA 218
Query: 392 CGAPIVGDSMYMPAA 406
CGAP+ GD+ Y P A
Sbjct: 219 CGAPLYGDAKYNPGA 233
>gi|187779918|ref|ZP_02996391.1| hypothetical protein CLOSPO_03514 [Clostridium sporogenes ATCC
15579]
gi|187773543|gb|EDU37345.1| pseudouridine synthase, RluA family [Clostridium sporogenes ATCC
15579]
Length = 317
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 41/265 (15%)
Query: 168 KRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH 227
++ IK + +K F IVE+ ++ K+F R ID N +I E+
Sbjct: 35 RKGEIKVNGKKSKEKNF--LEEGDIVESFN-VKSKGEKKKFVR---IDNNLKITYEDENM 88
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTP-LRTT------HQIDNCTEGCV 277
V+++K G V E + + L G TP L T +++D T G V
Sbjct: 89 VLVEKWPGVLVHSDKKEGEPTLTDYVLSYLYDKGDYTPELEVTFTPAPCNRLDRNTSGIV 148
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPINIAPRLVSEGWY 334
+ + E + IR++K++K Y +L + GI Y+ + N++ ++ +E
Sbjct: 149 IFGKNYESLKTLNEMIRDRKIEKYYSSLVKGRIKDGIYEAYISKNQDTNMS-KIYNEPKP 207
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ ME K +I+ CG S +I+LLTGR+HQ+RA L+ G
Sbjct: 208 NTKKIAMEVK-------------TIQTCGSFSF-----IEIELLTGRSHQLRAHLSHLGN 249
Query: 395 PIVGDSMYMPAAIAQLSSPGLNPFG 419
PI+GDS Y +L+S N +G
Sbjct: 250 PIIGDSKY---GDKKLNSFFHNKYG 271
>gi|88810811|ref|ZP_01126068.1| ribosomal large subunit pseudouridine synthase C [Nitrococcus
mobilis Nb-231]
gi|88792441|gb|EAR23551.1| ribosomal large subunit pseudouridine synthase C [Nitrococcus
mobilis Nb-231]
Length = 314
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 29/189 (15%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E ++LDKP+G +V G + +R G T PL H++D T GC+++
Sbjct: 87 ILYENEQLLILDKPSGLAVHGGSGLAYGVIEAIRARRPG-TLPLDLAHRLDRDTSGCLII 145
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ +E H +R +V+K YLAL L + P+ P G L Q
Sbjct: 146 AKRRETLRQIHALMRSNRVEKRYLALLRGKLASAMRVEA--PLERRP-----GQGLLQ-- 196
Query: 340 VMECKKVPWPDATVGKA-----YSIED-CGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
P + G+ + IE GW D + L TGR HQ+R A G
Sbjct: 197 -------PVQVSIGGRQALTVFHPIERHRGWTLVD------VMLHTGRMHQIRVHAAYSG 243
Query: 394 APIVGDSMY 402
P+ GD+ Y
Sbjct: 244 YPVAGDARY 252
>gi|121998031|ref|YP_001002818.1| RluA family pseudouridine synthase [Halorhodospira halophila SL1]
gi|121589436|gb|ABM62016.1| ribosomal large subunit pseudouridine synthase C [Halorhodospira
halophila SL1]
Length = 325
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRT 265
P + ++ E +VLDKP+G +V GG+T + A R L P +
Sbjct: 85 LPDGLEARLRRGVLYEDERLLVLDKPSGLAVHGGSTVRL---GLVEALRGLRPDLPFIEL 141
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL----PVGIMTHYMRP 321
H++D T GC++LA+ + H ++R+ KV+K Y L PL P+ + R
Sbjct: 142 VHRLDQETSGCLMLAKRRSTLRRLHEQLRQGKVEKHYTTLLVGPLRGVTPLRVDAPLER- 200
Query: 322 INIAPR----LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 377
+ APR VS+ E + +K WP AT+ A +L
Sbjct: 201 LPGAPRERQVRVSKQGRAAVTEFL--RKQSWPQATLVTA-------------------RL 239
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R G P+ GD Y
Sbjct: 240 ETGRTHQIRVHARHIGHPVAGDERY 264
>gi|226357282|ref|YP_002787022.1| RNA pseudouridine synthase [Deinococcus deserti VCD115]
gi|226319272|gb|ACO47268.1| putative RNA pseudouridine synthase [Deinococcus deserti VCD115]
Length = 298
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 82/199 (41%), Gaps = 36/199 (18%)
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
S + + KP+G +E + T +PL H++ T G V+ ART
Sbjct: 88 SLLAVHKPSGLPTLPGGGFLEHTLLTVVRAQFPGASPL---HRLGRGTSGVVLFARTGAA 144
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
S R RE+ V+K+Y AL + G+ T I VS G
Sbjct: 145 GSALARAWREQDVRKMYRALAS-----GVATQDETEIT-----VSIG------------- 181
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYECK---------IKLLTGRTHQVRAQLAACGAPI 396
P P +G+ ++ G PSR A + +++ TGR HQ+R LA+ G P+
Sbjct: 182 -PVPHPRLGEVFAACPTGKPSRSVARVVERCSGTTLFDVQIFTGRPHQIRIHLASIGQPL 240
Query: 397 VGDSMYMPAAIAQLSSPGL 415
VGD +Y P PGL
Sbjct: 241 VGDPLYGPGGHPLPDLPGL 259
>gi|409991924|ref|ZP_11275147.1| pseudouridine synthase [Arthrospira platensis str. Paraca]
gi|291570540|dbj|BAI92812.1| probable pseudouridine synthase [Arthrospira platensis NIES-39]
gi|409937215|gb|EKN78656.1| pseudouridine synthase [Arthrospira platensis str. Paraca]
Length = 309
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 37/236 (15%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D ++AG L H P P D+ + ++I +V+ KP+G V +E +
Sbjct: 56 DIELQAGQQLAYHRPPWNEP---DVPLSFQVIYEDADILVVAKPSGLPVIPGGGFLEHTL 112
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
R TP+ H++ T G V+LAR+ S +++R++++ K+YLAL
Sbjct: 113 LRQLQRKYPQDTPI-PIHRLGRGTSGLVLLARSTVGRSYLTKQMRQRQITKVYLALAEGC 171
Query: 310 LPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS--- 366
P + IN A K+P P +G Y + G +
Sbjct: 172 SPRDYFS-----INCA-----------------IGKIPHP--IIGYIYGATETGLSAESN 207
Query: 367 -----RDY-AYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
RD ++ +LTGR HQ+R LAA G P+VGD +Y +++ P N
Sbjct: 208 CQVIRRDSDKMIVQVTILTGRPHQIRIHLAAAGFPLVGDPLYTIGGKPRITDPTSN 263
>gi|398807422|ref|ZP_10566300.1| pseudouridine synthase, RluA family [Variovorax sp. CF313]
gi|398089432|gb|EJL79948.1| pseudouridine synthase, RluA family [Variovorax sp. CF313]
Length = 332
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 22/240 (9%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSV----GG 240
+T V V+AG R+ + P + + + + + H+ ++DKPAG V G
Sbjct: 71 LTKVSATVKAGQAGRIELRPTPQSQAFRPEPMDIVTVHEDEHLRIVDKPAGLVVHPAPGH 130
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
+ + RA+ L H++D T G +V+ART+ I ++VK+
Sbjct: 131 WSGTLLNGLLALDPRAV-LLPRAGIVHRLDRDTSGLMVVARTRAAMDAMVALIAAREVKR 189
Query: 301 LYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYS-- 358
YLA+ P PI PR ++ V++ ++ GK
Sbjct: 190 QYLAIGHKPWEGAAGRQVDAPIGRDPR------NRLRMAVVDLER------HAGKTARTL 237
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
IE + A C ++ TGRTHQ+R +A+ G P+VGD++Y A LS L+ F
Sbjct: 238 IERLDSNAEGCAVRCTLE--TGRTHQIRVHMASIGHPLVGDALYGGVPAAGLSRQALHAF 295
>gi|424827277|ref|ZP_18252086.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
gi|365980200|gb|EHN16236.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
Length = 317
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 41/265 (15%)
Query: 168 KRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH 227
++ IK + +K F IVE+ ++ K+F R ID N +I E+
Sbjct: 35 RKGEIKVNGKKSKEKNF--LEEGDIVESFN-VKSKGEKKKFVR---IDNNLKITYEDENM 88
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTP-LRTT------HQIDNCTEGCV 277
V+++K G V E + + L G TP L T +++D T G V
Sbjct: 89 VLVEKWPGVLVHSDKKEGEPTLTDYVLSYLYDKGDYTPELEVTFTPAPCNRLDRNTSGIV 148
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPINIAPRLVSEGWY 334
+ + E + IR++K++K Y +L + GI Y+ N++ ++ +E
Sbjct: 149 IFGKNYESLKTLNEMIRDRKIEKYYSSLVKGRIKDGIYEAYISKNEDTNMS-KIYNEPKP 207
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ ME K +I+ CG S +I+LLTGR+HQ+RA L+ G
Sbjct: 208 NTKKIAMEVK-------------TIQTCGSFSF-----IEIELLTGRSHQLRAHLSYLGN 249
Query: 395 PIVGDSMYMPAAIAQLSSPGLNPFG 419
PI+GDS Y +L+S N +G
Sbjct: 250 PIIGDSKY---GDKKLNSFFHNKYG 271
>gi|254512315|ref|ZP_05124382.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
gi|221536026|gb|EEE39014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
Length = 347
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I + + L+KP G V G + + + G R H++D T G +++
Sbjct: 93 VIYKDDQVLALNKPHGLPVQGGSGQTRHVDSLSEALRFGYDENPRLVHRLDKDTSGVLLM 152
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS------EGW 333
ART++ R + +K+Y AL G+ T Y+ I S EG
Sbjct: 153 ARTRDAAKALTAAFRHRNTRKIYWALVA-----GVPTPYLGEIKTGLVKASGHGKQGEGE 207
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+ L E P +A+++ + A ++ +TGRTHQ+RA +AA G
Sbjct: 208 KMIALHPSEVNDTP----GAKRAHTLYATLYRVAGRAAWVAMEPVTGRTHQLRAHMAAIG 263
Query: 394 APIVGDSMY 402
PI+GD Y
Sbjct: 264 HPIIGDGKY 272
>gi|365851190|ref|ZP_09391631.1| pseudouridine synthase, RluA family [Lactobacillus parafarraginis
F0439]
gi|363717389|gb|EHM00767.1| pseudouridine synthase, RluA family [Lactobacillus parafarraginis
F0439]
Length = 297
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 25/197 (12%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQID 270
D +I+ E ++++KPAG + D++ + R + ++D
Sbjct: 76 DLPIQIVFEDEHFLIVNKPAGVASVPAHNKANDSLVNRVKGYYERMGYANRKIHIATRLD 135
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G V+ + S+ +++++++++K YLA+ Y+ PI P +
Sbjct: 136 KDTSGLVIFGKHHFAHSVLDKQLKDRQIQKTYLAIVAGTFSSAHFEIYL-PIGRVPGSLV 194
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQ 388
+ ++V WP GK E WP + I+L TGRTHQ+R
Sbjct: 195 K------------RQVIWP----GKMSVTE--AWPVKRLVGHTLIRLRIHTGRTHQIRVH 236
Query: 389 LAACGAPIVGDSMYMPA 405
++A G P+VGD +Y P+
Sbjct: 237 MSAIGHPLVGDWLYNPS 253
>gi|339504824|ref|YP_004692244.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
gi|338758817|gb|AEI95281.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
Length = 346
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ ++KPAG G + + G R H++D T G ++LART+
Sbjct: 97 DDHIIAINKPAGLPTQGGSGQTRHVDGLSEALKFGFEDKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SEGWYL 335
+R K+ +K+Y AL G+ T Y+ I A LV EG +
Sbjct: 157 MAAKALTTAMRHKETRKIYWALV-----AGVPTPYLGEIRYA--LVKAPGHGRRGEGEKM 209
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
L E + P +A+++ + A ++ +TGRTHQ+R +A G P
Sbjct: 210 IALPPREVDETP----GAKRAHTLYATLYRVGSRASWVAMEPITGRTHQLRVHMAEIGHP 265
Query: 396 IVGDSMY 402
IVGD Y
Sbjct: 266 IVGDGKY 272
>gi|402835316|ref|ZP_10883887.1| pseudouridine synthase, RluA family [Mogibacterium sp. CM50]
gi|402275278|gb|EJU24436.1| pseudouridine synthase, RluA family [Mogibacterium sp. CM50]
Length = 329
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 30/213 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTT------HQI 269
+I+ E +V DKP G G ++ + A L G P +++
Sbjct: 87 KIVYEDEDILVADKPFGLLTHGDSNEKKNHLANQVKDYLIETGKYNPRERVFAPAPANRL 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G V+ + + IRE KV K Y+ + + H I++ RL+
Sbjct: 147 DRNTTGAVLFGKNSASLKTLNEMIRENKVDKYYMTI--------VYGHPDGEIDLKGRLI 198
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR---DYAYECKIKLLTGRTHQVR 386
+ + V D + IE P R D+ +IKL+TGRTHQ+R
Sbjct: 199 KD---------QKTNTVKILDIGASEGREIETIARPIRRIGDFTL-VEIKLVTGRTHQIR 248
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
A +A+ G P++GD Y A ++ FG
Sbjct: 249 AHMASVGHPVIGDVKYAGGKAADVNRKLKQRFG 281
>gi|406948286|gb|EKD79038.1| hypothetical protein ACD_41C00187G0002 [uncultured bacterium]
Length = 239
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 24/207 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIE------ESCATFASRALGLTTPLR--TTHQIDN 271
I+A T +V+++KPAG + + + E A + A PLR H++D
Sbjct: 15 ILAETPDYVIVNKPAGIIMHQGDQHPQADTLANEVVARYPEIAQVGEDPLRPGIIHRLDQ 74
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
G +V+ARTQ + ++ V+K YLAL G MT I
Sbjct: 75 DVSGVLVVARTQAMFQHLKSQWQQHLVRKRYLALVH-----GTMTQPDGEIK-------- 121
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ + + + K PDA+ A + + YA +++LTGR HQ+R L A
Sbjct: 122 -FSIARSAQLFTKMAARPDASGKAAITRYTVLQQFQRYAL-LDVEILTGRHHQIRVHLNA 179
Query: 392 CGAPIVGDSMYMPAAIAQLSSPGLNPF 418
G PIVG+ +Y P PG PF
Sbjct: 180 IGHPIVGEQIYKPKKFTSRLQPG-RPF 205
>gi|255319550|ref|ZP_05360764.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter
radioresistens SK82]
gi|262378429|ref|ZP_06071586.1| RNA pseudouridylate synthase [Acinetobacter radioresistens SH164]
gi|255303490|gb|EET82693.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter
radioresistens SK82]
gi|262299714|gb|EEY87626.1| RNA pseudouridylate synthase [Acinetobacter radioresistens SH164]
Length = 303
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 25/216 (11%)
Query: 189 VDQIVEAGTYLRVHVHPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
VD I E H++ RF P+ + + I+ T+ +V+DKP ++ T ++E
Sbjct: 68 VDSIYEGNQ----HIYYYRFLPKETPVPFEHHILHETDEFLVVDKPHFLTMSPTGQYVQE 123
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+ + G+ T L H++D T G V+ ++ E ++ + E+KV+K Y A+
Sbjct: 124 TLLVRLKKQTGIET-LTPIHRLDRETAGVVLFSKRPETRGLYQKLFAERKVEKTYHAV-- 180
Query: 308 APLPVGIMTHYMRPINIAPRL-VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
AP + PIN+ RL E +Y Q+ E D +A+ W
Sbjct: 181 APFKPDLNF----PINLKLRLDKGEPFYTMQIVEGEPNTETLIDLLDVRAH------WAK 230
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
Y+ K + TG+ HQ+R L G PI DS Y
Sbjct: 231 ----YQLKPR--TGKQHQLRVHLNHLGIPIQNDSFY 260
>gi|407717548|ref|YP_006794953.1| pseudouridylate synthase [Leuconostoc carnosum JB16]
gi|407241304|gb|AFT80954.1| pseudouridylate synthase [Leuconostoc carnosum JB16]
Length = 305
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 220 IIAVTESHVVLDKPAGT-----SVGGTTDNIEESCATFASRALGLTTPLRT----THQID 270
I+ + V++DKPAG S+ T + A F R L L+ + H+ID
Sbjct: 87 IVFENDDLVIVDKPAGMKMHPHSITETDTLLNYLAANFQMRQL-LSASAQAKPYMVHRID 145
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G V++A+ I +R + EKK+K+ YLA T G M IN+
Sbjct: 146 RETSGLVIVAKNPVVVPILNRLLSEKKIKRTYLAWVT-----GAMGERNGSINVP----- 195
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVRA 387
++ + +K W + G W Y+ +++L TGR HQ+R
Sbjct: 196 -----IGVDFLNDRK-RWIN---GIDAQTAITHWTCIHTVYQNSLLRLQLETGRMHQIRV 246
Query: 388 QLAACGAPIVGDSMY 402
LA+ G PI+GDS+Y
Sbjct: 247 HLASVGHPIIGDSLY 261
>gi|339480875|ref|ZP_08656534.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 305
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 85 IIFENEHWLVVDKPYGVTTVPGHADRLHTLVNQVKGHLEQIEAQDLVPHVVTRLDRDTSG 144
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++++ V+K YLA P GI++ IN AP EG ++
Sbjct: 145 IVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGIISDDHGDIN-APIGRVEGDFI 198
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV E K + V + Y E+ P K++L TGRTHQ+R A G P
Sbjct: 199 KR-EVREDGKPSRTEYWVERCYD-ENGQHP----MTRVKVQLHTGRTHQIRVHFANIGHP 252
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 253 LVGDDLY 259
>gi|227484916|ref|ZP_03915232.1| possible pseudouridylate synthase [Anaerococcus lactolyticus ATCC
51172]
gi|227237071|gb|EEI87086.1| possible pseudouridylate synthase [Anaerococcus lactolyticus ATCC
51172]
Length = 313
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
I+ I+ E+ +V++KP+G +V + + + + + +R +++D T
Sbjct: 102 IEGELNIVYEDENIIVVNKPSGLTVNSKNQLSLANLLAYYFQKNDIKSKIRLINRLDMNT 161
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G +++A+ + + + ++I E K K YLA L + + + IN+ +S+ +
Sbjct: 162 SGLMMVAKNRYAQAYYQKQIEENKTHKKYLAYVAGALNI----NELFKINLEYDEISKTY 217
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY-ECKIKLLTGRTHQVRAQLAAC 392
+ T K S +D DY+ EC IK TG+THQ+RA L +
Sbjct: 218 --------RNSEKGRLAITYFKTLSCDD------DYSLIECDIK--TGKTHQIRASLRSM 261
Query: 393 GAPIVGDSMYMPA 405
G PI+GD +Y A
Sbjct: 262 GHPIIGDKLYGSA 274
>gi|339448158|ref|ZP_08651714.1| RluA family pseudouridine synthase [Lactobacillus fructivorans KCTC
3543]
Length = 293
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 29/196 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+I+ ++ +++DKPAG + + D I + R + + +++D T
Sbjct: 80 KILFENDNFLIVDKPAGLASVPSHIYPKDTILNRVLGYYLRNDYPSKKVHVVNRLDRDTS 139
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG----IMTHYMRPINIAPRLVS 330
G V+ A+ S+ ++++++K++K Y+A+ + L + ++ +P + R V
Sbjct: 140 GPVMFAKNHLAHSVLDKQLQDRKIEKNYVAVISGELNIKHGEIVLPIVRKPGSFIEREVR 199
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
+ C+ E K V S+ KI+L TGRTHQ+R A
Sbjct: 200 DDGKYCRTEFWTLK--------VNNGMSL-------------VKIRLHTGRTHQIRVHFA 238
Query: 391 ACGAPIVGDSMYMPAA 406
G P+VGD +Y P A
Sbjct: 239 KIGYPLVGDWLYNPNA 254
>gi|148379407|ref|YP_001253948.1| pseudouridine synthase [Clostridium botulinum A str. ATCC 3502]
gi|153932742|ref|YP_001383785.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
ATCC 19397]
gi|153936684|ref|YP_001387335.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
Hall]
gi|387817707|ref|YP_005678052.1| ribosomal large subunit pseudouridine synthase C [Clostridium
botulinum H04402 065]
gi|148288891|emb|CAL82977.1| ribosomal large subunit pseudouridine synthase C [Clostridium
botulinum A str. ATCC 3502]
gi|152928786|gb|ABS34286.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
ATCC 19397]
gi|152932598|gb|ABS38097.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
Hall]
gi|322805749|emb|CBZ03314.1| ribosomal large subunit pseudouridine synthase C [Clostridium
botulinum H04402 065]
Length = 317
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 32/226 (14%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLT 260
K+F R ID N +I E+ V+++K G V E + + L G
Sbjct: 68 EKKKFVR---IDNNLKITYEDENMVLVEKWPGVLVHSDKKEGESTLTDYVLSYLYDKGDY 124
Query: 261 TP-LRTT------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
TP L T +++D T G V+ + E + IR++K++K Y +L + G
Sbjct: 125 TPELEVTFTPASCNRLDRNTSGIVIFGKNYEALKTLNEMIRDRKIEKYYSSLVKGRIKDG 184
Query: 314 IMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
I Y+ +E + ++ E K P +I+ CG S
Sbjct: 185 IYEAYISK--------NEDTNMSKI-YNEPK--PNTKKIAMNVKTIQTCGSFSF-----I 228
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+I+LLTGR+HQ+RA L+ G PI+GDS Y +L+S N +G
Sbjct: 229 EIELLTGRSHQLRAHLSHLGNPIIGDSKY---GDKKLNSFFHNKYG 271
>gi|254436973|ref|ZP_05050467.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198252419|gb|EDY76733.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 347
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ HV+ L+KPAG G + + + G R H++D T G ++LART+
Sbjct: 96 DDHVIALNKPAGLPTQGGSKQLRHVDGMAEALRFGYDEKPRLVHRLDKDTSGVLILARTR 155
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EV 340
R + +K+Y AL P+P Y LV +G + + E
Sbjct: 156 MAAKSLTDAFRHRNTEKIYWALVAGVPIPKLGSVKYG--------LVKQGGHGGKGDNER 207
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSR--DYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
M+C D T G ++ + + D + +TGRTHQ+RA +A G PIVG
Sbjct: 208 MKCVHPKDVDKTFGAKRALTNYTVLTSLADRTAWVALTPVTGRTHQLRAHMAEIGHPIVG 267
Query: 399 DSMYMPAAIAQLSSPG 414
D Y A+ +PG
Sbjct: 268 DGKYGAQAVQ--DNPG 281
>gi|392959181|ref|ZP_10324665.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421052955|ref|ZP_15515939.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421061189|ref|ZP_15523551.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421067881|ref|ZP_15529297.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421070091|ref|ZP_15531227.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392442702|gb|EIW20279.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446776|gb|EIW24053.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|392448702|gb|EIW25883.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392450881|gb|EIW27887.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392456564|gb|EIW33306.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
Length = 300
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPA V T + + A + + L G+ T +R H++D T GCV+ A+
Sbjct: 90 LVLNKPAYQLVHPTGQTTKGTLANYLAYHLQQQGIITTIRPVHRLDRETSGCVIFAKDDR 149
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
I ++++++ +K++Y AL T +P+G P R V E
Sbjct: 150 SQFILEQQLKDRTLKRVYWALVKGIVHPPSATIDVPIG-----FHPTMANRRAVKEKG-- 202
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + +++ S +++L TGRTHQ+R LA G P
Sbjct: 203 --------------DPAITHYHTLHTFSETSL-----IELRLDTGRTHQIRVHLAHIGYP 243
Query: 396 IVGDSMY 402
++GD MY
Sbjct: 244 LLGDGMY 250
>gi|405373396|ref|ZP_11028169.1| Ribosomal large subunit pseudouridine synthase D [Chondromyces
apiculatus DSM 436]
gi|397087655|gb|EJJ18685.1| Ribosomal large subunit pseudouridine synthase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 316
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 57/260 (21%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG-- 235
R A+K +T AG + V V + D ++ ++ ++ V +DKPAG
Sbjct: 49 RPAKKGLTLT-------AGQRIDVEVEEESREAVPDTEFPLTVLNEDDALVFVDKPAGRP 101
Query: 236 -----TSVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ GT N E + A+ +R GL H++D T G VV ART++
Sbjct: 102 SHPLQSGETGTVANALVARYPECAQASVDAREGGLC------HRLDVETSGVVVAARTRD 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+ + V K YLAL T PL + + H P + P
Sbjct: 156 AWNAVREAFGTRAVDKRYLALVTGPLTDEGDIEIPLRHHPRHPDRVEP------------ 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
P +A S S D++ ++++LTG HQVRA LA GAPIVG
Sbjct: 204 -------APHGAEDAREAVSKFTVLSRSGDFSV-VEVRILTGVLHQVRAHLAGIGAPIVG 255
Query: 399 DSMYMPAAIAQLSSPGLNPF 418
DS+Y +PGL F
Sbjct: 256 DSLY-----GGREAPGLGRF 270
>gi|294794409|ref|ZP_06759545.1| ribosomal large subunit pseudouridine synthase, RluA family
[Veillonella sp. 3_1_44]
gi|294454739|gb|EFG23112.1| ribosomal large subunit pseudouridine synthase, RluA family
[Veillonella sp. 3_1_44]
Length = 301
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 49/269 (18%)
Query: 151 PEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR 210
P ++ V K V + LS R + + R+ H + ++ G L + + P+
Sbjct: 23 PTELTVSKYVKERFSLSSRDIQMMFRKKRVKVNSRVAHSQRALKKGDVLTLEL-PQDKDY 81
Query: 211 CYDID--------WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
D++ ++ + V ++ +L PAG + T N A + ++ G+
Sbjct: 82 GVDVEKGPITVLYEDAHTLVVNKAPFMLVHPAGQTKSCTLSNY---IAGYYAKK-GVVHK 137
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R H++D T GC++ +T+E + +++ ++ ++Y L + M PI
Sbjct: 138 VRPVHRLDRETSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGHIDADGMVD--EPI 195
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR-DY---AYE-----C 373
+ P V + ++V I++ G P++ +Y YE
Sbjct: 196 GVDP-------------VFDNRRV------------IDEFGQPAQTEYTVLGYEGDNTLL 230
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ KLLTGRTHQ+R + G PI+GD+MY
Sbjct: 231 RFKLLTGRTHQIRVHMEHIGHPIIGDAMY 259
>gi|170017524|ref|YP_001728443.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc citreum
KM20]
gi|414596886|ref|ZP_11446458.1| Pseudouridine synthase [Leuconostoc citreum LBAE E16]
gi|421877700|ref|ZP_16309241.1| Pseudouridine synthase [Leuconostoc citreum LBAE C10]
gi|421879660|ref|ZP_16311121.1| Pseudouridine synthase [Leuconostoc citreum LBAE C11]
gi|169804381|gb|ACA82999.1| Pseudouridylate synthase, 23S RNA-specific [Leuconostoc citreum
KM20]
gi|372556478|emb|CCF25361.1| Pseudouridine synthase [Leuconostoc citreum LBAE C10]
gi|390446427|emb|CCF27241.1| Pseudouridine synthase [Leuconostoc citreum LBAE C11]
gi|390482250|emb|CCF28519.1| Pseudouridine synthase [Leuconostoc citreum LBAE E16]
Length = 300
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGVTTVPGHADRLHTLVNQVKGHLEEINAEDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++++ V+K YLA P GI+T IN AP EG ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGILTEDHGDIN-APIGRVEGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y E+ P K++L TGRTHQ+R G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYD-ENGEQP----MTRVKVQLHTGRTHQIRVHFKNIGHP 247
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 248 LVGDDLY 254
>gi|375111640|ref|ZP_09757844.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
gi|374568276|gb|EHR39455.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
Length = 242
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A T+ VL+K AG S + E+ A L L H++D T G ++
Sbjct: 10 QIVAQTDDFYVLNKAAGVSF-----HSEQGPGLVALAEQQLAQKLYPVHRLDKVTSGLLL 64
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LAR E + R +++V+K YLAL+ A P P+ A R W L Q
Sbjct: 65 LARRPEVAAELTRLFAKRQVQKCYLALSAA-RPQKKQGWVKGPMQPARR---GAWRLGQG 120
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
E + P V + Y +D P R + +K TG+THQ+R L + GA I+G
Sbjct: 121 E-----QAPAVTYFVSQGY--QDA--PFRAFL----LKPFTGKTHQLRVALKSVGAAILG 167
Query: 399 DSMY 402
D +Y
Sbjct: 168 DELY 171
>gi|334141387|ref|YP_004534593.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
gi|333939417|emb|CCA92775.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
Length = 420
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+S ++ + +VL+KP G + G + + + A P R H++D T G
Sbjct: 98 DSMVLTQDRAAIVLNKPPGLATQGGSGMKQHVDGLLDAYAPDGPRP-RLVHRLDKDTSGV 156
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
+++ART + F ++ + +K+Y AL VG+ + +S+G
Sbjct: 157 LLIARTPGSAAFFSKRFSGRSARKIYWALV-----VGVPS------------ISDG---- 195
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
++E P K + E+ G P+R + A ++ LTGRTHQ+R
Sbjct: 196 ---MIELPLAKQPGTGGEKMHVDEEGGQPARTRYRVLDRAGNRAAWVELHPLTGRTHQLR 252
Query: 387 AQLAACGAPIVGDSMY 402
+AA G PIVGD Y
Sbjct: 253 VHMAAIGHPIVGDGKY 268
>gi|409123707|ref|ZP_11223102.1| RNA pseudouridylate synthase [Gillisia sp. CBA3202]
Length = 284
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 42/196 (21%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT---THQIDNCTEGCVVLARTQEY 285
V++KPAG G E F L L H++DN T G +++A+T+
Sbjct: 91 VINKPAGYPTSGNYFKTIEQALPFNLEPSTLPDALPYPIPVHRLDNPTSGLLIVAKTKSA 150
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
H+ +KK++K YLAL T P+ H ++E E
Sbjct: 151 QLKLHQDFEDKKIQKTYLALVTGETPLEDSIH------------------TKIEDKEA-- 190
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
AT K + + + + ++ TGRTHQ+R LA+ G PIVGD +Y
Sbjct: 191 -----ATTYKKLK----SFQHKAFIFSLVEVAPKTGRTHQIRVHLASSGFPIVGDKLY-- 239
Query: 405 AAIAQLSSPGLNPFGK 420
G NPF K
Sbjct: 240 -------GSGENPFSK 248
>gi|389584119|dbj|GAB66852.1| ribosomal large subunit pseudouridylate synthase [Plasmodium
cynomolgi strain B]
Length = 503
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 33/206 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N I+ E +V++KP + G D++ S T + L R Q+D T G
Sbjct: 65 NLSIVYENEFFLVVNKPYDIKLEKGKLDDMYPSVETLLRQKTNLNV-FRICGQLDYATSG 123
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI-----NIAPRL-- 328
+++A+ + C+I + I K++ K+YLA+ LP+G++ H PI N +L
Sbjct: 124 LLIIAKDKLSCNILNYNIESKRLSKIYLAILYGHLPLGVL-HVNTPISKIKNNFKMKLCY 182
Query: 329 -----VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
G Y C + +P + C ++ C+++ +TGR H
Sbjct: 183 NYNDYYDNGKY--------CYSLIYP---------YKQCYLKNQKVTL-CELRTITGRRH 224
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQ 409
Q+R G+ IVGD Y I+
Sbjct: 225 QLRLHALCLGSGIVGDETYFEDMISN 250
>gi|336396117|ref|ZP_08577516.1| pseudouridine synthase [Lactobacillus farciminis KCTC 3681]
Length = 306
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 38/146 (26%)
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIA 325
++D T G +V A+T S+ R + + KK YLA+ + G++ PI I
Sbjct: 136 RLDRNTSGLMVFAKTSYAHSLLDRILHTEDFKKFYLAMVYGQVSPEKGLID---LPIGID 192
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR---------DYAYECKIK 376
P+ +Y+ ++ D G PS+ D A K+K
Sbjct: 193 PK----AFYMRNID--------------------HDLGKPSQTLYETVEKFDDASLLKLK 228
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMY 402
LLTGRTHQ+R L A G PI+GD MY
Sbjct: 229 LLTGRTHQIRVHLTAIGHPIIGDDMY 254
>gi|150016268|ref|YP_001308522.1| RluA family pseudouridine synthase [Clostridium beijerinckii NCIMB
8052]
gi|149902733|gb|ABR33566.1| pseudouridine synthase, RluA family [Clostridium beijerinckii NCIMB
8052]
Length = 324
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D T G V+ +T E + IRE +++K Y AL + G+ Y+ P
Sbjct: 142 NRLDRNTSGMVMFGKTFEGLKAINEAIREDEIRKYYYALAKGKIRAGLYEAYILK---NP 198
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATV--GKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
+ Y EV KK+ + V AYS+ +I L+TGR+HQ
Sbjct: 199 ETNTSKIY--DTEVKNSKKISMEISIVESNGAYSL-------------LEIHLITGRSHQ 243
Query: 385 VRAQLAACGAPIVGDSMYMPAAIAQL--SSPGLN 416
+RA LA G PI+GD+ Y + S GLN
Sbjct: 244 IRAHLAHLGNPIIGDNKYGDKKLNSFFESKYGLN 277
>gi|156095414|ref|XP_001613742.1| ribosomal large subunit pseudouridylate synthase [Plasmodium vivax
Sal-1]
gi|148802616|gb|EDL44015.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium vivax]
Length = 460
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 9/199 (4%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N I+ E +V++KP + G D++ S T + L R Q+D T G
Sbjct: 22 NLSIVYENEFFLVVNKPYDIKLEKGKLDDMYPSVETLLRQKTNLDV-FRICGQLDYATSG 80
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+++A+ + C+I + I K++ K+YLA+ LP+G++ H PI+
Sbjct: 81 LLIVAKDKLSCNILNYNIESKRISKIYLAMLYGHLPLGVL-HVNTPISKIKNKFKMKLCY 139
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ + K + Y + C + + C+++ +TGR HQ+R G+
Sbjct: 140 NYNDYYDSGKYCYS-----LVYPYKHC-YLKNEKVTLCELRTITGRRHQLRLHALCLGSG 193
Query: 396 IVGDSMYMPAAIAQLSSPG 414
IVGD Y I+ G
Sbjct: 194 IVGDETYFEDMISNKYKLG 212
>gi|440784507|ref|ZP_20961731.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
gi|440218824|gb|ELP58041.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
Length = 317
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 40/255 (15%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
++A++ + + D I Y+ K F R ID N ++ E+ ++L+K G
Sbjct: 44 KKAKEKYSLVEGDLI--ETYYINSKPKKKEFIR---IDNNFKVTYEDENMLILEKWPGVL 98
Query: 238 VGGTTDNIEESCATFASRAL---GLTTPLRTT-------HQIDNCTEGCVVLARTQEYCS 287
V ++ E + + L G P + +++D T G V+ + E
Sbjct: 99 VHSNSEAGEPTLTDYVLSYLYDKGDYEPEKEVTFTPAPCNRLDRNTSGIVLFGKNFEALK 158
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPINIAPRLVSEGWYLCQLEVMECK 344
+ IRE+K+KK Y AL L + Y+ NI+ SE ++ ME K
Sbjct: 159 ALNEMIRERKIKKYYTALVKGKLKDAVYEGYIYKNEDSNISTVFNSEKPNTKKI-AMEVK 217
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
+I+ CG S +I+L+TGR+HQ+RA L+ PIVGD+ Y
Sbjct: 218 -------------TIQTCGSFSL-----IEIELITGRSHQLRAHLSHLNHPIVGDNKY-- 257
Query: 405 AAIAQLSSPGLNPFG 419
+L+S N +G
Sbjct: 258 -GDKKLNSFFNNKYG 271
>gi|381336269|ref|YP_005174044.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|356644235|gb|AET30078.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 299
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 28/233 (12%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGITTVPGHADRLHTLVNQVKGHLETIKADDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ ++++ V+K YLA P GI+ IN AP +G ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQNHTVEKFYLAY-----PSGILPDDHGDIN-APIGRMDGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ++ K++L TGRTHQ+R A G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYEDDEQNMT------RVKVQLHTGRTHQIRVHFANIGHP 246
Query: 396 IVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS---DDDKEMAVIE 437
+VGD++Y A L L +PF + +E+ + DD K + IE
Sbjct: 247 LVGDTLYGGPAWHGLQRQALHAYHMKFYDPFIEEYREFNTPLPDDLKTLRDIE 299
>gi|319650250|ref|ZP_08004396.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
gi|317398081|gb|EFV78773.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
Length = 265
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 48/228 (21%)
Query: 193 VEAGTYLRVHVHPKR----FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT---DNI 245
++AG L+ H + P YDI+ ++ + +VL+KPAG + +N
Sbjct: 20 LQAGDKLKFHFFREEDLGLIPSYYDIE----VLFEDDHLLVLNKPAGMDTHPNSPEQNNT 75
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+ A F + G ++ H++D T G ++ A+ +I +K+ E+ +K+ YLAL
Sbjct: 76 LANAAAFHMQMQGEYRSIKHIHRLDRDTTGAILFAKHALAGAILDKKLEERTIKRTYLAL 135
Query: 306 T---------TAPLPVGIMTHYMRPINIAPRLVSEGWY--LCQLEVMECKKVPWPDATVG 354
T P+G H+ A R VS G + E++E +P+ +
Sbjct: 136 VHGRISKIRGTISEPIGRDRHHP-----ARRRVSPGGQPAVTNYELIEY----FPNLKL- 185
Query: 355 KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
S+ C +L TGRTHQ+R L+ G P+ GD +Y
Sbjct: 186 ---SLIKC-------------RLDTGRTHQIRVHLSHIGHPLAGDILY 217
>gi|254564943|ref|XP_002489582.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Komagataella pastoris GS115]
gi|238029378|emb|CAY67301.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Komagataella pastoris GS115]
gi|328350006|emb|CCA36406.1| DRAP deaminase [Komagataella pastoris CBS 7435]
Length = 547
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 19/224 (8%)
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
E + ++ +VD ++ G + +H P D I + V++KP+G V
Sbjct: 98 EVKLNDQVANVDSVLRNGDLISHRIHRHEPPVTLD---EIEIAYEDDEITVINKPSGIPV 154
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
T S + +G T T +++D T G + L +T + ++I+E+ V
Sbjct: 155 HPTGRYRHNSITMIMKQEMG--TIAHTCNRLDRLTSGIMFLGKTAMKTAKMVQQIKERNV 212
Query: 299 KKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYS 358
K+Y+A P+G+ + I PRL + L LE D K
Sbjct: 213 GKVYIAKCKGKFPLGLQVVDKPLLTIDPRLT---FNLVDLE----------DGKEAKTL- 258
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ ++D K LTGRTHQ+R L G PI D +Y
Sbjct: 259 FRRISYDTKDNTSIVKCMPLTGRTHQIRVHLQFIGYPIANDPVY 302
>gi|304404376|ref|ZP_07386037.1| pseudouridine synthase [Paenibacillus curdlanolyticus YK9]
gi|304346183|gb|EFM12016.1| pseudouridine synthase [Paenibacillus curdlanolyticus YK9]
Length = 258
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT--TAPLPVGIMTHYMR 320
L H++D G +V A+T + S +R + K Y+A+ T P G + HYMR
Sbjct: 68 LGLVHRLDRPVGGAMVFAKTSKAASRLSETVRSRVFGKTYMAIVHGTPAQPYGTLKHYMR 127
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
N R VSE + V + K+ A + + ++ +KL TG
Sbjct: 128 KDN--KRNVSETF---DRPVADAKEAVLDYAVMDRIGNLS-----------LVAVKLHTG 171
Query: 381 RTHQVRAQLAACGAPIVGDSMY-MPAA 406
R+HQ+RAQ+AA G P+ GD+ Y PAA
Sbjct: 172 RSHQIRAQMAAIGCPLYGDAKYGAPAA 198
>gi|282849742|ref|ZP_06259126.1| pseudouridine synthase, RluA family [Veillonella parvula ATCC
17745]
gi|282580679|gb|EFB86078.1| pseudouridine synthase, RluA family [Veillonella parvula ATCC
17745]
Length = 289
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 49/269 (18%)
Query: 151 PEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR 210
P ++ V K V + LS R + + R+ H ++++ G L + + P+
Sbjct: 11 PTELTVSKYVKERFSLSSRDIQMMFRKKRVKVNSRVAHSQRVLKKGDVLTLEL-PQDKDY 69
Query: 211 CYDIDW--------NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
D++ ++ + V ++ +L PAG + T N A + ++ +
Sbjct: 70 GVDVEQGPITVLYEDAHTLVVNKAPFMLVHPAGQTKSCTLSNY---VAGYYAKK-NVVHK 125
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R H++D T GC++ +T+E + +++ ++ ++Y L + M PI
Sbjct: 126 VRPVHRLDRDTSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGRIDADGMVD--API 183
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR-DY---AYE-----C 373
+ P V + ++V I++ G P++ +Y YE
Sbjct: 184 GVDP-------------VFDNRRV------------IDEFGQPAQTEYTVLGYEGDNTLL 218
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ KLLTGRTHQ+R + G PIVGD+MY
Sbjct: 219 RFKLLTGRTHQIRVHMEHIGHPIVGDAMY 247
>gi|254482018|ref|ZP_05095260.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
gi|214037708|gb|EEB78373.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
Length = 318
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 102/263 (38%), Gaps = 65/263 (24%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTT 261
P PR + R+I +V+DKP+G +V GG+ N ES S
Sbjct: 82 PPTIPRYWSEQLKQRVIYEDGGLLVVDKPSGLAVHGGSGLNFGMIESLRQIRSE----DR 137
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT-----------APL 310
L H++D T G +++AR HR++RE V K YLAL APL
Sbjct: 138 YLELVHRLDRDTSGLIMVARKPAILRELHRQLREDHVDKRYLALVAGKWPRSKVRVDAPL 197
Query: 311 PVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYA 370
++ R + +A EG K D TV + + A
Sbjct: 198 QKNVLQSGERMVRVA----KEG------------KRSITDFTVVERFK----------GA 231
Query: 371 YECKIKLLTGRTHQVRAQLAACGAPIVGDS------------------MYMPAAIAQLSS 412
+ K +TGRTHQ+R G P++GDS +++ A +
Sbjct: 232 TLVEAKPVTGRTHQIRVHALHAGFPLLGDSKYGSPKGEALCEQIGLKRLFLHARALRFKL 291
Query: 413 PGLNPFGKCQKEYASDDDKEMAV 435
PG+ G+ + E D D EMA+
Sbjct: 292 PGV---GRMELEAPLDKDLEMAL 311
>gi|289208370|ref|YP_003460436.1| pseudouridine synthase [Thioalkalivibrio sp. K90mix]
gi|288944001|gb|ADC71700.1| pseudouridine synthase, RluA family [Thioalkalivibrio sp. K90mix]
Length = 328
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTPLRTTHQIDNCTEG 275
I+ + +VLDKP+G +V G S F A R L + L H++D T G
Sbjct: 99 ILHEDDQVLVLDKPSGLAVHGG------SGLAFGIIEAMRQLRPGSELELGHRLDRETSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
C++LA+++ FH +RE +V+K YLAL P + P + E
Sbjct: 153 CLLLAKSRSGLQDFHAALREGRVEKRYLALQVGAFP-----------SDQPIVCDEPIAS 201
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYA--YECKIKLLTGRTHQVRAQLAACG 393
+ + + DA A S P Y ++++ TGRTHQ+R A G
Sbjct: 202 SRGPDGKRRMRAGEDADPESARSAISQFVPLERYGSFQLAEVRIGTGRTHQIRVHGQAIG 261
Query: 394 APIVGDSMY-MPAAIAQLSSPGLN 416
P+ GD Y +P A L GL
Sbjct: 262 HPVGGDHDYGLPDANRVLRGAGLK 285
>gi|221484026|gb|EEE22330.1| RNA pseudouridylate synthase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 2255
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A++ + ++ + KK+YLAL +P+ H + P+
Sbjct: 2021 HRLDTPTSGPLLVAKSYAGLAFLRAQLASWRPKKVYLALVFGAVPLREKVHLVHPL---- 2076
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R E + E+ V DA + ++ I + RD+ C+++ +TGRTHQ
Sbjct: 2077 RPTFEAGKTGKKEMEVANTV---DAKIALSFLSGITHYSYGGRDFTL-CRVEPVTGRTHQ 2132
Query: 385 VRAQLAACGAPIVGDSMYM 403
+RAQLA G PIV D +Y+
Sbjct: 2133 IRAQLAHIGHPIVADPIYV 2151
>gi|15894302|ref|NP_347651.1| pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|337736233|ref|YP_004635680.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
gi|384457741|ref|YP_005670161.1| Pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|15023925|gb|AAK78991.1|AE007617_3 Pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|325508430|gb|ADZ20066.1| Pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|336292744|gb|AEI33878.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
Length = 318
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 36/234 (15%)
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
Y+R K+F R I+ N ++ E+ ++++K G V + + + L
Sbjct: 63 YIRSDAKKKKFTR---IENNFKVTYEDENMLLVEKWPGVLVHSDKEKTSPTLTDYVLSYL 119
Query: 258 ---GLTTPLRTT-------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
G P +++D T G V+ + E + IRE+++KK Y AL
Sbjct: 120 YDKGDYAPENEVTFTPSPCNRLDRNTSGIVIYGKNFEALKCLNEMIRERRIKKYYYALVK 179
Query: 308 APLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDAT--VGKAYSIEDCGWP 365
+ GI Y++ + VS + E++ P P A + +E CG
Sbjct: 180 GKIKDGIYEAYIK------KDVSSN----KSEIINT---PAPGAKQISMEIKCVETCGTF 226
Query: 366 SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
S +I+LLTGR+HQ+RA L+ G PI+GD Y I ++S N FG
Sbjct: 227 SF-----IEIELLTGRSHQLRAHLSHLGNPILGDPKY---GIKDINSYFENKFG 272
>gi|114766871|ref|ZP_01445793.1| ribosomal large subunit pseudouridine synthase C [Pelagibaca
bermudensis HTCC2601]
gi|114540917|gb|EAU43977.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
HTCC2601]
Length = 350
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 12/205 (5%)
Query: 205 PKRFPRCYDIDWNSRII--AVT--ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGL 259
P P+ D ++++I AV + H++ L+KP G V G + +
Sbjct: 76 PAAKPKATVSDADAKMIRDAVIYRDDHIIALNKPPGLPVQGGSKQERHVDGLAEALRFDY 135
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
R H++D T G ++LART+E IR K+ +K+Y A+ G+ T Y+
Sbjct: 136 DEKPRLVHRLDKDTSGVLLLARTREIAQALTGAIRHKQTRKIYWAVV-----AGVPTPYL 190
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKL 377
I + E M C D T G +A+++ + A ++
Sbjct: 191 GEIRFGLVKAPGHGKSGEGEKMICVHPREMDRTPGAKRAHTLYATLYRVAGRASWVALEP 250
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
+TGRTHQ+RA +A G PI+GD Y
Sbjct: 251 ITGRTHQLRAHMAEIGHPIIGDGKY 275
>gi|373463553|ref|ZP_09555152.1| pseudouridine synthase, RluA family [Lactobacillus kisonensis
F0435]
gi|371764332|gb|EHO52750.1| pseudouridine synthase, RluA family [Lactobacillus kisonensis
F0435]
Length = 300
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+I+ + +++DKPAG S D + + R + ++D T
Sbjct: 80 KIVHEDPNFLIVDKPAGVASVPSHNYAQDTLVNRVKGYYQRQGYANQKIHIVTRLDKDTS 139
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
G V+ A+ S+ ++++++ ++K YLA+T+ + Y+ PI +
Sbjct: 140 GLVIFAKHHFAHSVLDKQLKDRTIQKTYLAITSGQITADHFEIYL-PIG------RDETS 192
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE--CKIKLLTGRTHQVRAQLAAC 392
+ +V K+ SI + GW R ++ +++L TGRTHQ+R L+A
Sbjct: 193 FVKRQVTNSGKM-----------SITE-GWVVRRLPHQTLVRLQLHTGRTHQIRVHLSAL 240
Query: 393 GAPIVGDSMYMP 404
G P++GD +Y P
Sbjct: 241 GHPLIGDWLYNP 252
>gi|372271855|ref|ZP_09507903.1| ribosomal large subunit pseudouridine synthase C [Marinobacterium
stanieri S30]
Length = 324
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
I+ ++S VV++KP+G +V G + + AL P L H++D T G
Sbjct: 98 IVYESDSLVVINKPSGLAVHGGS-----GVSLGMIEALRQIRPKSRFLELVHRLDRDTSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
C+++A+ + H +R++KV K+Y AL VG + I+ AP L E L
Sbjct: 153 CIMVAKKRSMLRYLHDALRQRKVNKIYHALV-----VGRWEKRKQAID-APLLRYE---L 203
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
E M K P +V + + +D A + + LTGRTHQ+R G P
Sbjct: 204 KSGERM-VKVNPDGKPSVTRFQVLRRF----QDAATLIEARPLTGRTHQIRVHTQYAGHP 258
Query: 396 IVGDSMYMPAA 406
IVGD Y P A
Sbjct: 259 IVGDVKYTPDA 269
>gi|154245827|ref|YP_001416785.1| pseudouridine synthase [Xanthobacter autotrophicus Py2]
gi|154159912|gb|ABS67128.1| pseudouridine synthase [Xanthobacter autotrophicus Py2]
Length = 264
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+++DKP G V E + GL H++D T GC+VL R + +
Sbjct: 29 LIIDKPHGLPVHAGPKGGETLADHLDALRFGLPRAPELAHRLDKDTSGCLVLGRHAKALA 88
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ + V K YLA+T P +P+ A R GW++ +
Sbjct: 89 LLGKLFANGSVGKTYLAVTQG-SPAEDAGRIDQPL--AKRSPHRGWWMQAV--------- 136
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P T G +I D R + + +TGRTHQ+RA L+ G PI GD++Y
Sbjct: 137 -PKGTPGAQEAITDYRVLHRAGGFAVMALSPVTGRTHQLRAHLSNLGHPIFGDAIY 191
>gi|182680419|ref|YP_001834565.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636302|gb|ACB97076.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 234
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQ 268
D +R++ +VLDKPAG V GG DN+E A F GL H+
Sbjct: 4 FDLQARLLYRDGMMLVLDKPAGIPVHKGPKGG--DNLE---AFFDDLRFGLPRRPALAHR 58
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
+D T GC+VL R + ++ K+ K Y ++ L + + + R
Sbjct: 59 LDRDTSGCLVLGRHHKALEKLGLLFKQGKIAKTYWSVV---LGGPTEDEGLIDLPLGRRD 115
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
GW++ ++ + P A S + C +K LTGRTHQ+R
Sbjct: 116 AERGWWMK----VDPEGAPAQTRWTVLARSADHC---------LLALKPLTGRTHQLRVH 162
Query: 389 LAACGAPIVGDSMYMPA 405
AA G PI+GD +Y PA
Sbjct: 163 CAAQGFPILGDPVYGPA 179
>gi|421075679|ref|ZP_15536686.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392526238|gb|EIW49357.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 301
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPA V T + + A + + L G+ T +R H++D T GCV+ A+
Sbjct: 90 LVVNKPAYQLVHPTGQTTKGTLANYLAYHLQQQGVITTIRPVHRLDRETSGCVIFAKDDR 149
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
I ++++++ +K++Y AL T P+G P R V E
Sbjct: 150 SQFILEQQLKDRTLKRVYWALVKGIVHPPAATIDFPIG-----FHPTMANRRAVREKG-- 202
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + +++ + S +++L TGRTHQ+R LA G P
Sbjct: 203 --------------DPAITHYHTLHNFSETSL-----VELRLDTGRTHQIRVHLAHIGYP 243
Query: 396 IVGDSMY 402
++GD MY
Sbjct: 244 LLGDGMY 250
>gi|374301538|ref|YP_005053177.1| dephospho-CoA kinase [Desulfovibrio africanus str. Walvis Bay]
gi|332554474|gb|EGJ51518.1| Dephospho-CoA kinase [Desulfovibrio africanus str. Walvis Bay]
Length = 556
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINI 324
H++D T G +V+A T+ E++V K+YLAL P G + P+
Sbjct: 141 VHRLDKDTSGLLVVALTERARLALAEDFAERRVDKVYLALVHGRPQDRGDIDL---PMGR 197
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLTGRTH 383
P + ++ V++ P A S + W SRD + ++++ TGRTH
Sbjct: 198 HPT------HKTRMAVLKKGGRP--------ARSAYEMLWSSRDGRFSLLRVRIFTGRTH 243
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIA 408
Q+R LAA G PI+GDS+Y P A
Sbjct: 244 QIRVHLAAIGHPIIGDSVYGPGPFA 268
>gi|149203330|ref|ZP_01880300.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149143163|gb|EDM31202.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 347
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 8/181 (4%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + + G R H++D T G ++LART+
Sbjct: 97 DDHIIALNKPPGLPVQGGSKQLRHVDGLAEALRFGAEDKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
E R + +K+Y A A +P M + AP ++G + E M C
Sbjct: 157 EAAKGLTAAFRHRNTRKIYWA-AVAGVPTPRMGTIRFGLVKAPGHGAKG----EGEKMLC 211
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSM 401
DAT G + D A + L+ TGRTHQ+RA +A G PIVGD
Sbjct: 212 LHPRDIDATPGAKPATTDYAVIEAAGARTAWMALIPVTGRTHQLRAHMAEIGHPIVGDGK 271
Query: 402 Y 402
Y
Sbjct: 272 Y 272
>gi|406916265|gb|EKD55290.1| hypothetical protein ACD_60C00017G0007 [uncultured bacterium]
Length = 318
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 34/196 (17%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCT 273
++RI+ + ++++KP+G V GGT NI A R++ P L H++D+ T
Sbjct: 91 LSNRILYEDKHLLIINKPSGVPVHGGTQVNI---GIIEALRSMYPELPHLELAHRLDSDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-------PLPVGIMTHYMRPINIAP 326
GC+VLA+ + H +RE KV K+YLALT + V + HY++
Sbjct: 148 SGCLVLAKKRSILRELHGLLREGKVHKVYLALTKGHWKTSELTVDVSLQKHYLQGGERMV 207
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
++ EG L V P T +A +E L TGRTHQ+R
Sbjct: 208 KVDREGK--SSLTVFH------PVETFQEAMLVEAT--------------LHTGRTHQIR 245
Query: 387 AQLAACGAPIVGDSMY 402
A PI GD Y
Sbjct: 246 VHAAYKKHPIAGDPKY 261
>gi|346991289|ref|ZP_08859361.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TW15]
Length = 347
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ HV+ L+KP G V G + + + G R H++D T G +++ART+
Sbjct: 97 DDHVLALNKPHGLPVQGGSGQTRHVDSLSEALRFGYDENPRLVHRLDKDTSGVLLMARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SEGWYL 335
E R + +K+Y AL G+ T Y+ I LV EG +
Sbjct: 157 EAAKGLTAAFRHRNTQKIYWALV-----AGVPTPYLGEIKTG--LVKAPGHGKQGEGEKM 209
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ E P +A+++ + A ++ +TGRTHQ+RA +AA G P
Sbjct: 210 IAVHPSEVNDTP----GAKRAHTLYATLYRVAGRAAWVAMEPVTGRTHQLRAHMAAIGHP 265
Query: 396 IVGDSMY 402
I+GD Y
Sbjct: 266 IIGDGKY 272
>gi|322437152|ref|YP_004219364.1| pseudouridine synthase [Granulicella tundricola MP5ACTX9]
gi|321164879|gb|ADW70584.1| pseudouridine synthase, RluA family [Granulicella tundricola
MP5ACTX9]
Length = 371
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 56/234 (23%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRAL-----------GLT 260
D +I+ E V++KPAG V G+TD+ E + T + L G+
Sbjct: 122 DIPLQIVYEDEYLAVVNKPAGMMVHAGAGSTDD-ERNRGTLVNAVLFHMGKTADSLSGVG 180
Query: 261 TPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKI----REKKVKKLYLAL--------- 305
LR H++D T G +V+A+ + HR++ E++V K YL L
Sbjct: 181 GELRPGIVHRLDKQTSGLIVVAKD----DVTHRRLGEMFSERRVSKTYLTLAHGELKKAD 236
Query: 306 TTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWP 365
TT LP I +R I + R + V+E P+ GK +E
Sbjct: 237 TTVSLP--IARDLVRRIRMTTRRGDGRSAVSHFHVLERLDTPY-----GKFTFVE----- 284
Query: 366 SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLS-SPGLNPF 418
+K+ TGRTHQ+R L + G P+VGD++Y + +L+ P + P
Sbjct: 285 ---------VKIETGRTHQIRVHLQSLGHPVVGDTLYGAPHVVRLTKEPNVEPL 329
>gi|421464165|ref|ZP_15912858.1| RNA pseudouridine synthase [Acinetobacter radioresistens WC-A-157]
gi|400206539|gb|EJO37516.1| RNA pseudouridine synthase [Acinetobacter radioresistens WC-A-157]
Length = 303
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 23/215 (10%)
Query: 189 VDQIVEAGTYLRVHVHPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+D I E H++ RF P+ + + I+ T+ +V+DKP ++ T ++E
Sbjct: 68 IDSIYEGNQ----HIYYYRFLPKETPVPFEHHILHETDEFLVVDKPHFLTMSPTGQYVQE 123
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+ + G+ T L H++D T G V+ ++ E ++ + E+KV+K Y A+
Sbjct: 124 TLLVRLKKQTGIET-LTPIHRLDRETAGVVLFSKRPETRGLYQKLFAERKVEKTYHAV-- 180
Query: 308 APLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR 367
AP + PIN+ RL +G ++V+E + + D R
Sbjct: 181 APFKPELNF----PINLTLRL-DKGEPFYTMQVVEG------EPNTETLIDLLDV----R 225
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ + ++K TG+ HQ+R L G PI DS Y
Sbjct: 226 AHWAKYQLKPRTGKQHQLRVHLNHLGIPIQNDSFY 260
>gi|338176687|ref|YP_004653497.1| ribosomal large subunit pseudouridine synthase A [Parachlamydia
acanthamoebae UV-7]
gi|336481045|emb|CCB87643.1| ribosomal large subunit pseudouridine synthase A [Parachlamydia
acanthamoebae UV-7]
Length = 226
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALGL--TTPLRTTH 267
DID I+ +V++KPAG T N +E C + + L H
Sbjct: 3 DID----ILYADNHLLVVNKPAGLLTQPTDLNPESLEALCKQWVKQDKNKEGNIFLHAVH 58
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIA 325
++D G ++ ART + S +++REK KK YLA P+ GI+ HY+ +
Sbjct: 59 RLDKPASGILLFARTSKALSRLSKQMREKHCKKTYLACIDRPISQSEGILEHYLTHDHHH 118
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKA-YSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
++ + P DA + Y I P KI L+TGR HQ
Sbjct: 119 AKVYNH---------------PVDDAKRSRLDYQIIHQQGP----LSLLKIDLITGRYHQ 159
Query: 385 VRAQLAACGAPIVGDSMY 402
+RAQL+ G PI+GD Y
Sbjct: 160 IRAQLSHIGCPIIGDLRY 177
>gi|300854916|ref|YP_003779900.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
gi|300435031|gb|ADK14798.1| predicted ribosomal large subunit pseudouridine synthase D
[Clostridium ljungdahlii DSM 13528]
Length = 319
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D T G V+ + E + + IRE+ +KK Y+AL + G+ Y I
Sbjct: 139 NRLDRNTSGIVIYGKNYESLKLLNEMIRERSIKKYYIALVIGKIKDGVYEGY-----IKK 193
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + + KK+ + ++ CG S +++L+TGR+HQ+R
Sbjct: 194 DRTNNKSSVSNTPEKDSKKISM------RVKNVNTCGIYSL-----IQLELITGRSHQLR 242
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
A LA G IVGDS Y ++ ++S N +G
Sbjct: 243 AHLAYLGNAIVGDSKY---GVSNINSFFYNKYG 272
>gi|256831008|ref|YP_003159736.1| pseudouridine synthase [Desulfomicrobium baculatum DSM 4028]
gi|256580184|gb|ACU91320.1| pseudouridine synthase [Desulfomicrobium baculatum DSM 4028]
Length = 232
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G ++LAR++E+ + RE+ V+K Y+AL+ ++
Sbjct: 51 VHRLDKATSGLLLLARSREWAAALAGLFRERAVQKYYIALS----------------DLT 94
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDA-TVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
P + L Q +++ ++ W A ++ + W R +K ++GRTHQ
Sbjct: 95 P---GKKQGLVQGDMVRSRRGSWKLARSMERPARTRFLSWSVRPGMRLFVLKPMSGRTHQ 151
Query: 385 VRAQLAACGAPIVGDSMYMP 404
+R + + GAPI+GDS+Y P
Sbjct: 152 LRVAMKSLGAPILGDSLYHP 171
>gi|406984445|gb|EKE05460.1| hypothetical protein ACD_19C00284G0002 [uncultured bacterium]
Length = 247
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 228 VVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLR-------TTHQIDNCTEGCV 277
VVLDKPAG + DNI S L T H++D T G +
Sbjct: 18 VVLDKPAGLVINAAETQKDNITLQDLIAVSDLLEEDTEYSEFRDRSGIVHRLDKDTSGII 77
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL---TTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
++A+T+E + + +KV K+YLAL L VG PI P+
Sbjct: 78 IVAKTRESFENLQEQFKSRKVHKVYLALVYGVIKDLTVGETFEINAPIGRNPK------N 131
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ ++E K AT K I + + EC K TGRTHQ+R L A G
Sbjct: 132 RQRFAIVESGKEA---ATKFKLIKIINSKSDGKFSLLECYPK--TGRTHQIRVHLTALGN 186
Query: 395 PIVGDSMY 402
+VGD +Y
Sbjct: 187 SVVGDFLY 194
>gi|376004347|ref|ZP_09782061.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
gi|376004460|ref|ZP_09782157.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
gi|375327160|emb|CCE17910.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
gi|375327239|emb|CCE17814.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
Length = 309
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 37/233 (15%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF 252
++AG L H P P D+ + ++I +V+ KP+G V +E +
Sbjct: 59 LQAGQQLAYHRPPWSEP---DVPLSFQVIYEDADILVIAKPSGLPVIPGGGFLEHTLLRQ 115
Query: 253 ASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
R TP+ H++ T G V+LAR+ S +++R +++ K+YLAL P
Sbjct: 116 LQREYPQDTPI-PIHRLGRGTSGLVLLARSTLARSHLTQQMRHRQITKVYLALAEGCSPR 174
Query: 313 GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ IN A K+P P +G Y + G + +
Sbjct: 175 DYFS-----INCA-----------------IGKIPHP--IIGYIYGATETGLSAESHCQV 210
Query: 373 CK---------IKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
K + +LTGR HQ+R LAA G P+VGD +Y ++ P N
Sbjct: 211 IKRDTDKMIVQVTILTGRPHQIRIHLAAAGFPLVGDPLYTIGGKPRIPDPTSN 263
>gi|365858930|ref|ZP_09398824.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
gi|363713362|gb|EHL96989.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
Length = 238
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 20/201 (9%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P R P + +RI+ T++ +VLDKPAG V + A G +
Sbjct: 9 PPRLPAEPPAEIAARILLRTDTVLVLDKPAGLPVHAGPRGGASLESWLPLLAFGKKRIPQ 68
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV---GIMTHYMRP 321
H++D T GC+VL RT+ + E + +K Y A+ P P G + +R
Sbjct: 69 PAHRLDTDTAGCLVLGRTKPALAELGALFAEGRAEKTYWAVLRGPGPAEGTGRIDLPLRK 128
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
++ A + GW + + W +G+ + C W +++ TGR
Sbjct: 129 VSTA----AHGWRMETHPEGQPAITLW--RVLGRGPGL--C-W--------VELRPRTGR 171
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R AA G PI+GD Y
Sbjct: 172 THQLRVHCAALGFPILGDPFY 192
>gi|253682033|ref|ZP_04862830.1| pseudouridine synthase, RluA family [Clostridium botulinum D str.
1873]
gi|253561745|gb|EES91197.1| pseudouridine synthase, RluA family [Clostridium botulinum D str.
1873]
Length = 323
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRAL---GLT 260
PK+F ++D++S I+ + ++ +++K G V N E + + L G
Sbjct: 74 PKKFQ---EVDFSSIKISYEDENILIIEKWPGVLVHSDKKNGEPTLTDYVLSYLFQKGDY 130
Query: 261 TPLRTT-------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
P + +++D T G V+ + + I + IRE+K+KK Y AL + G
Sbjct: 131 DPQKEVTFTPAPCNRLDRNTSGMVIFGKNFKTLKILNAMIRERKIKKYYNALVKGKIKEG 190
Query: 314 IMTHYM--RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY 371
Y+ +N + E + ME K + TVG +E
Sbjct: 191 YYEAYILKDQVNNISEIHKEEKQNSKRIAMEVKVID----TVGTFSFLE----------- 235
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+ LLTGR+HQ+RA LA G PI+GD Y +L+S N +G
Sbjct: 236 ---LDLLTGRSHQLRAHLAYLGNPIIGDDKY---GDKKLNSFFNNKYG 277
>gi|404370007|ref|ZP_10975334.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
gi|226913862|gb|EEH99063.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
Length = 323
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 26/164 (15%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPIN 323
+++D T G V+ + E + IRE KV+K Y L + G+ Y+ N
Sbjct: 141 NRLDRNTSGIVIFGKNFEALRTMNEMIREGKVEKYYNTLVKGKIKDGLYKGYIHKNEEAN 200
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
I+ R+ E + ME K + T G AYS +I L+TGR+H
Sbjct: 201 IS-RIYDEKITDSKEIAMEVKTL----KTNG-AYSF-------------LEIDLITGRSH 241
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG-KCQKEYA 426
Q+RA L+ G PI+GD+ Y +L+S N FG CQ YA
Sbjct: 242 QIRAHLSHLGTPIIGDNKY---GDRKLNSFFANKFGLDCQFLYA 282
>gi|299143164|ref|ZP_07036244.1| ribosomal large subunit pseudouridine synthase, RluA family
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517649|gb|EFI41388.1| ribosomal large subunit pseudouridine synthase, RluA family
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 293
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 34/192 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGC 276
II + VV++KP D++E + F + + +R +++D T G
Sbjct: 84 IIYEDDDIVVVNKPPYMVTHTAKDDVENTLLNFVAGYFEDNKIRRKVRIVNRLDRDTSGI 143
Query: 277 VVLARTQEYCSIFHRKIREK---KVKKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSE 331
V++A+ S H I+E+ VKK Y+A+ + GI+ +PI+IA +
Sbjct: 144 VIVAKN----SFSHSSIQEQFGDSVKKEYVAIVNGIIKNDSGIIE---KPIDIAK----D 192
Query: 332 GWYLCQLEVMECKKVPWPDATVGK-AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G +++ PD K +Y + D+ K++L TGRTHQ+R ++
Sbjct: 193 G----------IRRIVSPDGKYSKTSYEV----IKRNDFFTLVKLRLYTGRTHQIRVHMS 238
Query: 391 ACGAPIVGDSMY 402
G PI+GD++Y
Sbjct: 239 HMGTPILGDALY 250
>gi|52079396|ref|YP_078187.1| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646823|ref|ZP_08001052.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|404488258|ref|YP_006712364.1| pseudouridine synthase YhcT [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423681357|ref|ZP_17656196.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
gi|52002607|gb|AAU22549.1| putative Pseudouridine synthase YhcT [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|52347258|gb|AAU39892.1| putative pseudouridine synthase YhcT [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317391411|gb|EFV72209.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|383438131|gb|EID45906.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
Length = 305
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 38/188 (20%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
++++KPAG + G T + A F + G +R H++D T G VV A+ +
Sbjct: 93 LIVNKPAGMATHPNEAGQTGTLSNLVA-FYFQMNGEERKVRHVHRLDKDTSGAVVFAKHR 151
Query: 284 EYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWY 334
++ +++ K++ + Y+A+ T P+G H+ P+ R VS
Sbjct: 152 LAHALLDEQLQRKELARTYVAVAEGKFRKKTGTISAPIGRDKHH--PVR---RRVSHSG- 205
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
P T E G+ SR C+++L TGRTHQ+R LA+ G
Sbjct: 206 -------------QPAVT-----HFESKGYDSRHDVTLCRLQLETGRTHQIRVHLASIGH 247
Query: 395 PIVGDSMY 402
P+ GD++Y
Sbjct: 248 PLSGDTLY 255
>gi|115372352|ref|ZP_01459661.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|310819495|ref|YP_003951853.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|115370565|gb|EAU69491.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|309392567|gb|ADO70026.1| Pseudouridine synthase, RluA family [Stigmatella aurantiaca
DW4/3-1]
Length = 324
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E+ + +DKP G + T S S LG L H++D T G V +T +
Sbjct: 89 EALIAVDKPVGITAQPTEGRAGGSLVDLVSERLGQLAGL--VHRLDRETSGVTVFGKTPQ 146
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ + RE + +K Y+A T LP P++ P W +
Sbjct: 147 ATTALAAEFREGRARKRYVAATGPGLPASGTVDL--PLSRDPARPGR-WRASR----AAN 199
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMY 402
VP A + + D+ C ++LL TGRTHQ+RA L A GAPI+GDS Y
Sbjct: 200 GVP--------ALTDFRTLYSGADF---CLVELLPQTGRTHQLRAHLTALGAPILGDSRY 248
Query: 403 MPAAIAQLSSPG 414
AA A S G
Sbjct: 249 GGAATAGGLSAG 260
>gi|124506351|ref|XP_001351773.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium falciparum 3D7]
gi|23504702|emb|CAD51580.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium falciparum 3D7]
Length = 487
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II + +VL+KP + G D+I S T + L R Q+D T G +
Sbjct: 65 KIIYENDYFLVLNKPYDIKLEKGKLDDIYPSVETLLYQKRKLDV-FRICGQLDYATSGLL 123
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW--YL 335
++A+ + C+I + I K + K+YLA+ LP+ I+ H PI+ EG+ L
Sbjct: 124 IVAKDKLSCNILNYNIESKNISKIYLAILYGHLPLDIL-HINTPISKNK----EGFKMKL 178
Query: 336 CQLEVMECKKVPWPD-ATVGKA-YSI---EDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
C + D GK YS+ + + + C+++ +TGR HQ+R
Sbjct: 179 C---------YNYNDYYDNGKYCYSLIYPYKHSYINNEKVTLCEMRTVTGRRHQLRLHSL 229
Query: 391 ACGAPIVGDSMYMPAAIAQ 409
+ G+ IVGD Y I
Sbjct: 230 SLGSSIVGDETYFDDMITN 248
>gi|229016637|ref|ZP_04173574.1| Pseudouridine synthase [Bacillus cereus AH1273]
gi|229022852|ref|ZP_04179372.1| Pseudouridine synthase [Bacillus cereus AH1272]
gi|228738387|gb|EEL88863.1| Pseudouridine synthase [Bacillus cereus AH1272]
gi|228744627|gb|EEL94692.1| Pseudouridine synthase [Bacillus cereus AH1273]
Length = 307
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 47/245 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + D++++ G L+VH+ Y +D + + + HV +
Sbjct: 45 KGITVNGEQRRW-----DELLKEGDKLQVHMF---MEEEYGVDPQYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK---------- 206
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D + Y +E + ++ A ++L TGRTHQ+R ++ G P+V
Sbjct: 207 -----------GDQAI-TYYKVEK--YFNKQNATLVTLQLETGRTHQIRVHMSYNGNPLV 252
Query: 398 GDSMY 402
GD +Y
Sbjct: 253 GDVLY 257
>gi|160899764|ref|YP_001565346.1| pseudouridine synthase [Delftia acidovorans SPH-1]
gi|160365348|gb|ABX36961.1| pseudouridine synthase [Delftia acidovorans SPH-1]
Length = 245
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKP+G ++ C + RAL H++D T G VV+AR+
Sbjct: 42 LVLDKPSGLLCVPGRGPDKQDC--LSGRALQRWPDALVVHRLDQATSGLVVMARSLASQR 99
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ +++V KLY+A+ A P + I++ ++ W L +++ +
Sbjct: 100 LLSEAFAQRRVHKLYVAVV-AGRPAAQQADAWQSIDLP---IAADWERRPLRIIDALQGK 155
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
P T+ +A G + +++ +TGRTHQ+R +AA G I+GD++Y AA+
Sbjct: 156 -PSQTLWRAMPAATEGHDT--PTTRVQLQPVTGRTHQLRVHMAALGHAILGDALYADAAV 212
Query: 408 AQLS 411
LS
Sbjct: 213 QALS 216
>gi|115374968|ref|ZP_01462239.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|115367995|gb|EAU66959.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
Length = 272
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 91/210 (43%), Gaps = 50/210 (23%)
Query: 228 VVLDKPAGT-------SVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTE 274
VV+DKPAG GT N E + A+ +R GL H++D T
Sbjct: 49 VVVDKPAGRPSHPLKPGETGTVANALIARYPECAQASEDAREGGLC------HRLDIETS 102
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP------VGIMTHYMRPINIAPRL 328
G ++ ART+E ++V K Y+AL T PL + + H P + P L
Sbjct: 103 GVLLAARTREAWQRLRTAFSGREVDKHYVALVTGPLADEGEIEIPLRHHPRHPDRVEPAL 162
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
E E + +A+S+ S D++ ++++LTG HQVRA
Sbjct: 163 PGE----------EGAR---------EAHSLFQVQARSGDFSL-VEVRILTGVLHQVRAH 202
Query: 389 LAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
LA GAP+VGDS+Y PGL+ F
Sbjct: 203 LAGIGAPLVGDSLY-----GGREEPGLSRF 227
>gi|423420666|ref|ZP_17397755.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|401101233|gb|EJQ09224.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
Length = 307
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 47/245 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + D++++ G L+VH+ Y +D + + + HV +
Sbjct: 45 KGITVNGEQRRW-----DELLKEGDKLQVHMF---MEEEYGVDPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGAGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK---------- 206
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D + Y +E + ++ A ++L TGRTHQ+R ++ G P+V
Sbjct: 207 -----------GDQAI-TYYKVEK--YFNKQNATLVTLQLETGRTHQIRVHMSYNGNPLV 252
Query: 398 GDSMY 402
GD +Y
Sbjct: 253 GDVLY 257
>gi|326316917|ref|YP_004234589.1| pseudouridine synthase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373753|gb|ADX46022.1| pseudouridine synthase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 241
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G VV+AR + ++V K Y+A+ AP P G + R I++
Sbjct: 67 VHRLDQATSGIVVMARHAQAQRALGDAFAARQVHKRYVAVVHAPHPAGDGAAW-REIDLP 125
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGK----AYSIEDCGWPSRDYAYECKIKLLTGR 381
++ W L V+ P A++ + A W + + ++ +TGR
Sbjct: 126 ---IAADWERRPLRVVVPHGAPGGKASLTRWRPAAPGDGAVTWRATEGTLRVLLEPVTGR 182
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
THQ+R +AA PI+GD++Y P AI L+
Sbjct: 183 THQLRVHMAAVDQPILGDTLYAPPAIQALA 212
>gi|423392314|ref|ZP_17369540.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
gi|401634961|gb|EJS52723.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
Length = 307
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 47/245 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + D++++ G L+VH+ Y +D + + + HV +
Sbjct: 45 KGITVNGEQRRW-----DELLKEGDKLQVHMF---MEEEYGVDPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK---------- 206
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D + Y +E + ++ A ++L TGRTHQ+R ++ G P+V
Sbjct: 207 -----------GDQAI-TYYKVEK--YFNKQNATLVTLQLETGRTHQIRVHMSYNGNPLV 252
Query: 398 GDSMY 402
GD +Y
Sbjct: 253 GDVLY 257
>gi|325288659|ref|YP_004264840.1| pseudouridine synthase [Syntrophobotulus glycolicus DSM 8271]
gi|324964060|gb|ADY54839.1| pseudouridine synthase, RluA family [Syntrophobotulus glycolicus
DSM 8271]
Length = 295
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Query: 210 RCYDIDWNSRIIAVT---ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPL 263
R Y ++ + I + ES +VL+KPAG V G TT + R LG+ +
Sbjct: 69 RSYGVNPEAGAIDILYEDESLIVLNKPAGLLVHPAGMTTSGTLANYLADYFRQLGVICTI 128
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R H++D T GC+V A+ S + K+K+ YLAL L + PI
Sbjct: 129 RPLHRLDRDTSGCLVFAKGPVVQSKMEDLLAAGKIKRTYLALAEG-LIIPAEGTISAPIA 187
Query: 324 IAP-----RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
P R+VSE + K T G+ +E + L
Sbjct: 188 SDPAKPNRRMVSEKGSQAITHYRKLK-------TFGQNSLVE--------------LNLE 226
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R LA G PI+GD MY
Sbjct: 227 TGRTHQIRVHLAYLGHPILGDRMY 250
>gi|410694586|ref|YP_003625208.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Thiomonas sp. 3As]
gi|294341011|emb|CAZ89406.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Thiomonas sp. 3As]
Length = 329
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT 265
+FP ++ D+ ++A+ +KP G +V GG+ + A A+R L
Sbjct: 87 QFPVVFEDDF---LLAI-------NKPEGVAVHGGSGVSFGVIEALRAARPT--AKFLEL 134
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +++A+ + + H +RE+ K YLAL G + M +
Sbjct: 135 VHRLDRDTSGLLLIAKKRSALTTLHAALRERHADKRYLALVAGLWTRGAV---MIEAPLH 191
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCG-WPSRDYAYECKIKLLTGRTHQ 384
L++ G +++V + ++ + +++ G W + +LLTGRTHQ
Sbjct: 192 KYLLANGERRVRVDVQQGQE-SRTQFRSQEQFALPGLGPWGGLSL---MQARLLTGRTHQ 247
Query: 385 VRAQLAACGAPIVGDSMYMPAAIAQL---SSPGLNPF 418
+R LA CG PIVGD Y ++ L G+ PF
Sbjct: 248 IRVHLAHCGHPIVGDDKYGDDSLNALLARGQAGVPPF 284
>gi|78044542|ref|YP_359965.1| ribosomal large subunit pseudouridine synthase A [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996657|gb|ABB15556.1| ribosomal large subunit pseudouridine synthase, RluA family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 301
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 25/181 (13%)
Query: 228 VVLDKPAGTSVGGTTDN----IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V+DKPAG ++ ++E ++ + +++D T G +++A+
Sbjct: 87 IVIDKPAGVLAHPVKNHFAPSMQELTLSYYRDKGRIFEGFYPIYRLDRNTSGPMLIAKFS 146
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLVSEGWYLCQLEVM 341
+ + +R++++ K+YLAL PL GI IN+ P + EG ++
Sbjct: 147 LIAEMLNNSLRKRQINKIYLALIEGPLADKSGI-------INL-PLGLLEG------SII 192
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
+ VP K +++ +P+ K++LLTGRTHQ+RA AA G P+ GD +
Sbjct: 193 KRAVVPGGQPACTKYQTVK--AFPTHTL---LKVELLTGRTHQIRAHFAAIGHPLAGDDL 247
Query: 402 Y 402
Y
Sbjct: 248 Y 248
>gi|332292825|ref|YP_004431434.1| pseudouridine synthase [Krokinobacter sp. 4H-3-7-5]
gi|332170911|gb|AEE20166.1| pseudouridine synthase [Krokinobacter sp. 4H-3-7-5]
Length = 232
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR 320
L H++D T G VV ART + ++ E++ +K Y AL P P G + HY++
Sbjct: 61 LGVVHRLDRPTSGIVVFARTSKALPRLNKAFAERETQKTYWALVKNPPPAESGTLIHYLK 120
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
P+ Y + EV + KK + K + + +I L TG
Sbjct: 121 R---NPK--QNKSYAHKHEVPDSKKAILDYRVIKKLKTF-----------FLLEIDLHTG 164
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+RAQL A G+PI GD Y
Sbjct: 165 RHHQIRAQLTAIGSPIKGDLKY 186
>gi|345303474|ref|YP_004825376.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
gi|345112707|gb|AEN73539.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
Length = 254
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 36/187 (19%)
Query: 228 VVLDKPAGTSVGGTTDN-----------IEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+V++KP+G G I+E + LGL H++D G
Sbjct: 29 LVINKPSGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLV------HRLDTPVSGV 82
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEGWYL 335
+VLART + + ++ RE+ V+K+YLAL L GI +M P RLV E
Sbjct: 83 MVLARTSKAAARLGQQFRERTVEKVYLALVEGELAGSGIWEDFMAPARDHMRLVPE---- 138
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D GK + +R+ ++ TGR HQ+R QLA G P
Sbjct: 139 --------------DHPFGKRAVLHWQALMTRNGLTLMRLVPETGRKHQIRVQLAFRGYP 184
Query: 396 IVGDSMY 402
I+GD Y
Sbjct: 185 ILGDRRY 191
>gi|310820541|ref|YP_003952899.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|309393613|gb|ADO71072.1| Pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
Length = 315
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 91/210 (43%), Gaps = 50/210 (23%)
Query: 228 VVLDKPAGT-------SVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTE 274
VV+DKPAG GT N E + A+ +R GL H++D T
Sbjct: 92 VVVDKPAGRPSHPLKPGETGTVANALIARYPECAQASEDAREGGLC------HRLDIETS 145
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP------VGIMTHYMRPINIAPRL 328
G ++ ART+E ++V K Y+AL T PL + + H P + P L
Sbjct: 146 GVLLAARTREAWQRLRTAFSGREVDKHYVALVTGPLADEGEIEIPLRHHPRHPDRVEPAL 205
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
E E + +A+S+ S D++ ++++LTG HQVRA
Sbjct: 206 PGE----------EGAR---------EAHSLFQVQARSGDFSL-VEVRILTGVLHQVRAH 245
Query: 389 LAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
LA GAP+VGDS+Y PGL+ F
Sbjct: 246 LAGIGAPLVGDSLY-----GGREEPGLSRF 270
>gi|421187468|ref|ZP_15644827.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB419]
gi|421190491|ref|ZP_15647792.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB422]
gi|421193274|ref|ZP_15650523.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB553]
gi|421195673|ref|ZP_15652877.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB568]
gi|421196393|ref|ZP_15653582.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB576]
gi|399968676|gb|EJO03108.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB419]
gi|399969926|gb|EJO04240.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB422]
gi|399972478|gb|EJO06678.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB553]
gi|399975314|gb|EJO09371.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB568]
gi|399977593|gb|EJO11573.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB576]
Length = 277
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRT--THQ 268
D RI++ E ++++DKPAG + + N ++ + L + P H+
Sbjct: 56 DRRLRILSEKEDYLLVDKPAGMKMHPHSPNETDTLLNYVEAQLKGHLSRSCPAHAFMVHR 115
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYM--RPINI 324
ID T G V++A+ I + + +K++K+ YLA + L G + + PIN
Sbjct: 116 IDRDTSGVVIIAKNPLAVGILDQLLAKKRIKRTYLAWVSGNLENKKGSIDQAIAVDPINP 175
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGR 381
R+V D KA + W Y+ ++ L TGR
Sbjct: 176 YKRIV--------------------DQAGQKAVT----HWTKIHTVYQNTLVRVSLETGR 211
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQL 410
THQ+R AA G PIVGD +Y A ++L
Sbjct: 212 THQIRVHFAAIGHPIVGDHLYNGLAYSRL 240
>gi|209523615|ref|ZP_03272169.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|423065904|ref|ZP_17054694.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
gi|209496020|gb|EDZ96321.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|406712662|gb|EKD07846.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
Length = 309
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 37/233 (15%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF 252
++AG L H P P D+ + ++I +V+ KP+G V +E +
Sbjct: 59 LQAGQQLAYHRPPWSEP---DVPLSFQVIYEDADILVVAKPSGLPVIPGGGFLEHTLLRQ 115
Query: 253 ASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
R TP+ H++ T G V+LAR+ S +++R +++ K+YLAL P
Sbjct: 116 LQREYPQDTPI-PIHRLGRGTSGLVLLARSTLGRSHLTQQMRHRQITKVYLALAEGCSPR 174
Query: 313 GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ IN A K+P P +G Y + G + +
Sbjct: 175 DYFS-----INCA-----------------IGKIPHP--IIGYIYGATETGLSAESHCQV 210
Query: 373 CK---------IKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
K + +LTGR HQ+R LAA G P+VGD +Y ++ P N
Sbjct: 211 IKRDTDKMIVQVTILTGRPHQIRIHLAAAGFPLVGDPLYTIGGKPRIPDPTSN 263
>gi|339450694|ref|ZP_08654064.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc lactis KCTC
3528]
Length = 300
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGVTTVPGHADRLHTLVNQVKGHLEETNAEDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ ++++E V+K YLA T+ GI+ IN AP EG ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQEHTVEKFYLAYTS-----GILPEDHGDIN-APIGRVEGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ED P +++L TGRTHQ+R G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYD-EDGDNP----MTRVRVQLHTGRTHQIRVHFQNIGHP 247
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 248 LVGDDLY 254
>gi|326692754|ref|ZP_08229759.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc argentinum
KCTC 3773]
Length = 300
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E +V+DKP G T+V G D + H ++D T G
Sbjct: 80 IIFENEHWLVVDKPYGVTTVPGHADRLHTLVNQVKGHLEETNAEDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ ++++E V+K YLA T+ GI+ IN AP EG ++
Sbjct: 140 IVLLAKHRFAHAVLDQQLQEHTVEKFYLAYTS-----GILPEDHGDIN-APIGRVEGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV + K + V + Y ED P +++L TGRTHQ+R G P
Sbjct: 194 KR-EVRDDGKPSRTEYWVERRYD-EDGDNP----MTRVRVQLHTGRTHQIRVHFQNIGHP 247
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 248 LVGDDLY 254
>gi|452976054|gb|EME75870.1| pseudouridine synthase YhcT [Bacillus sonorensis L12]
Length = 319
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
++++KPAG + G T + A F + G +R H++D T G VV A+ +
Sbjct: 105 LIVNKPAGIATHPNEKGQTGTLSNLIA-FYDQTNGTERKIRHVHRLDKDTSGAVVFAKHR 163
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
+I ++++K++ + YLA+ L R I + + ++ + V
Sbjct: 164 LAHAILDEQLQKKELARTYLAIAEGKLK-------NRKGTIKDPIGRDRYHPARRRVSPT 216
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ TV K Y P+ D + C+++L TGRTHQ+R LA G P+ GD +Y
Sbjct: 217 GQAAVTHYTV-KGY------HPTYDVSL-CELRLETGRTHQIRVHLAHLGHPLSGDELY 267
>gi|410727526|ref|ZP_11365742.1| 23S RNA-specific pseudouridylate synthase [Clostridium sp.
Maddingley MBC34-26]
gi|410598600|gb|EKQ53169.1| 23S RNA-specific pseudouridylate synthase [Clostridium sp.
Maddingley MBC34-26]
Length = 324
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 23/155 (14%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D T G VV +T E + IRE ++KK Y L + G+ Y+ +
Sbjct: 142 NRLDRNTAGIVVFGKTFEGLKCINEAIREDEIKKYYYTLAKGKIRNGLYEAYI--VKNPE 199
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATV--GKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
VS+ + EV KK+ TV AYS+ D I L+TGR+HQ
Sbjct: 200 TNVSK---IYDSEVENSKKIAMEITTVETNGAYSLID-------------INLITGRSHQ 243
Query: 385 VRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+RA LA G PI+GD+ Y +L+S N +G
Sbjct: 244 IRAHLAHLGNPIIGDNKY---GDKKLNSFFENKYG 275
>gi|170759830|ref|YP_001786858.1| RluA family pseudouridine synthase [Clostridium botulinum A3 str.
Loch Maree]
gi|169406819|gb|ACA55230.1| pseudouridine synthase, RluA family [Clostridium botulinum A3 str.
Loch Maree]
Length = 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTP 262
K+F R ID N +I E+ V+++K G V E + + L G TP
Sbjct: 70 KKFVR---IDNNLKITYEDENMVLVEKWPGVLVHSDKKEGEPTLTDYVLSYLYDKGDYTP 126
Query: 263 -LRTT------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
L T +++D T G V+ + E + IR++K++K Y +L + G+
Sbjct: 127 ELEVTFTPAPCNRLDRNTSGIVIFGKNYEALKTLNEMIRDRKIEKYYSSLVKGRIKDGVY 186
Query: 316 THYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI 375
Y+ +E + ++ E K P +I+ CG S +I
Sbjct: 187 EAYISK--------NEDTNMSKI-YNEPK--PNTKKIAMNVKTIQTCGSFSF-----IEI 230
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+LLTGR+HQ+RA L+ G PI+GDS Y +L+S N +G
Sbjct: 231 ELLTGRSHQLRAHLSHLGNPIIGDSKY---GDKKLNSFFHNKYG 271
>gi|168182364|ref|ZP_02617028.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|237794773|ref|YP_002862325.1| RluA family pseudouridine synthase [Clostridium botulinum Ba4 str.
657]
gi|182674479|gb|EDT86440.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|229262158|gb|ACQ53191.1| pseudouridine synthase, RluA family [Clostridium botulinum Ba4 str.
657]
Length = 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTP 262
K+F R ID N +I E+ V+++K G V E + + L G TP
Sbjct: 70 KKFVR---IDNNLKITYEDENMVLVEKWPGVLVHSDKKEGEPTLTDYVLSYLYDKGDYTP 126
Query: 263 -LRTT------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
L T +++D T G V+ + E + IR++K++K Y +L + G+
Sbjct: 127 ELEVTFTPAPCNRLDRNTSGIVIFGKNYEALKTLNEMIRDRKIEKYYSSLVKGRIKDGVY 186
Query: 316 THYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI 375
Y+ +E + ++ E K P +I+ CG S +I
Sbjct: 187 EAYISK--------NEDTNMSKI-YNEPK--PNTKKIAMNVKTIQTCGSFSF-----IEI 230
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+LLTGR+HQ+RA L+ G PI+GDS Y +L+S N +G
Sbjct: 231 ELLTGRSHQLRAHLSHLGNPIIGDSKY---GDKKLNSFFHNKYG 271
>gi|331698896|ref|YP_004335135.1| pseudouridine synthase [Pseudonocardia dioxanivorans CB1190]
gi|326953585|gb|AEA27282.1| pseudouridine synthase [Pseudonocardia dioxanivorans CB1190]
Length = 252
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 26/191 (13%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
ES +V+DKP G SV G + + T A+ A LR ++ID T G V+LA+++E
Sbjct: 17 ESCLVVDKPPGLSVMGERHDTD--LVTIAADA---GEDLRWVNRIDKVTSGAVLLAKSKE 71
Query: 285 YCSIFHRKIREKKVKKLYLAL-------TTAPLPVGIMTHYMRPINIAP-----RLVSEG 332
R+ +++ V K YLA+ T A + + +MT I +A RL
Sbjct: 72 AHGALTRQFQQRTVAKSYLAICRPGGFPTRATIDLPLMTAGSGRIRVAADREHIRLDDSR 131
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
W++ + K P + + +I D G + +TGR HQ+R LA
Sbjct: 132 WHVRPEDEHARKHFP----SRTECSAIHDDG-----DTVVVRADPVTGRKHQIRVHLAWV 182
Query: 393 GAPIVGDSMYM 403
G IVGD +++
Sbjct: 183 GHAIVGDPLFL 193
>gi|121594293|ref|YP_986189.1| ribosomal large subunit pseudouridine synthase A [Acidovorax sp.
JS42]
gi|120606373|gb|ABM42113.1| ribosomal large subunit pseudouridine synthase A [Acidovorax sp.
JS42]
Length = 222
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 25/215 (11%)
Query: 219 RIIAVTESHVVLDKPAGTS-VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R + V ++ +VLDKP+G V G + +++ +T RA L H++D T G V
Sbjct: 10 RSVHVDDTLLVLDKPSGLLCVPGRGPDKQDALST---RAQALWPDALIVHRLDQPTSGLV 66
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
++AR ++ V K Y A+ +P H ++GW
Sbjct: 67 LMARGAAMQRALSHSFAQRLVHKRYRAVVAGRMPPPDPAH------------ADGWGEIA 114
Query: 338 LEVM---ECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVRAQLAA 391
L + E + + DAT G+ S+ + D A + +++ +TGRTHQ+R LAA
Sbjct: 115 LPIAADWERRPLRVVDATHGQP-SLTRWRVLAHDAARDTTSVELEPVTGRTHQLRVHLAA 173
Query: 392 CGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYA 426
G PI+GD +Y A++ Q +P L C E+A
Sbjct: 174 LGHPILGDQLYADASV-QARAPRLL-LHACVLEFA 206
>gi|429766122|ref|ZP_19298396.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429185102|gb|EKY26091.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 322
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D T G V+ + E + IRE KVKK Y AL + G+ Y+
Sbjct: 141 NRLDRNTSGVVIFGKNFEALRTMNEMIREGKVKKYYNALVKGKIKDGLYKGYISK----- 195
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
E + + V + KK P + +++ CG S +I L+TGR+HQ+R
Sbjct: 196 ---DENENISK--VYDEKK-PNTKEIAMEVKTVQTCGSFSL-----LEIDLITGRSHQIR 244
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
A LA G PI+GD Y +L+S N FG
Sbjct: 245 AHLAHLGNPIIGDFKY---GDKKLNSFFDNKFG 274
>gi|126737039|ref|ZP_01752774.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
gi|126721624|gb|EBA18327.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
Length = 348
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I + +VL+KPAG +V G + + L R H++D T G +VL
Sbjct: 94 VIYKDDDVIVLNKPAGLAVQGGSGTTRHVDGLSEALRLEAEEKPRLVHRLDKDTSGVLVL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SE 331
AR ++ R K +K+Y AL G+ T Y+ I LV E
Sbjct: 154 ARNRKAAQALTAAFRHKNTRKIYWALV-----AGVPTPYLGEIKTG--LVKAPGHGRSGE 206
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G + + + P +A++ + A ++ +TGRTHQ+RA +AA
Sbjct: 207 GEKMIPVHPRDIDDTP----GAKRAHTHYATLYRVASRASWVAMEPITGRTHQLRAHMAA 262
Query: 392 CGAPIVGDSMY 402
G PI GD Y
Sbjct: 263 IGHPIAGDGKY 273
>gi|404497687|ref|YP_006721793.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|418067343|ref|ZP_12704688.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78195289|gb|ABB33056.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|373558948|gb|EHP85265.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 296
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 36/184 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
VV++KP G V T ++ E++ A R L G LR +++D T G +LA++
Sbjct: 88 VVVNKPPGLPVHRTAED-EQTLVDVAERFLAQRGTPAKLRPVNRLDRGTSGATILAKSAT 146
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+F R ++E + KLYLA+ LP +EG LE E
Sbjct: 147 SAGMFGRFVKETGLGKLYLAVADGKLP------------------AEGTIDTPLEGKEA- 187
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
+ + GK+ ++ + +TGRTHQ+R LA G P+ GD Y
Sbjct: 188 QTQYRTLFQGKSAAL-------------LLVTPITGRTHQIRKHLALTGHPVRGDRRYRG 234
Query: 405 AAIA 408
A +A
Sbjct: 235 APLA 238
>gi|379706961|ref|YP_005262166.1| putative RNA pseudouridylate synthase [Nocardia cyriacigeorgica
GUH-2]
gi|374844460|emb|CCF61522.1| putative RNA pseudouridylate synthase [Nocardia cyriacigeorgica
GUH-2]
Length = 256
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 34/209 (16%)
Query: 213 DIDWNSRI----IAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
DIDW IA ++ V ++KPAG SV G ++ A+ A+G T L H+
Sbjct: 2 DIDWPDLRERCRIAEDDAIVAVNKPAGISVTGER---HDTDIVQAAAAVGET--LYPVHR 56
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP-----------LPVGIMTH 317
ID T G V+LA+ R+ ++ +K YLA+ T P LP+ +
Sbjct: 57 IDKVTSGVVLLAKELAAHGQLTRQFNKQTARKTYLAIVTTPEGELPDAGTIDLPLSVGRK 116
Query: 318 YMRPINIAPR--LVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
I APR + ++G W++ ++++ K P +T A + D G+
Sbjct: 117 NRVRI-AAPRESIRTDGDRWFVDPGDLLDTKNYP---STTRFATVLRDKGYTV------L 166
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++ +TGR HQ+R LA G I GD ++
Sbjct: 167 ALRPVTGRRHQLRVHLAWIGHAIAGDPLF 195
>gi|407718062|ref|YP_006795467.1| pseudouridylate synthase [Leuconostoc carnosum JB16]
gi|407241818|gb|AFT81468.1| pseudouridylate synthase [Leuconostoc carnosum JB16]
Length = 300
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDN----IEESCATFASRALGLTTPLRTTHQIDNCTE 274
II E +V+DKP G T+V G D + + P T ++D T
Sbjct: 80 IIFENEHWLVVDKPYGITTVPGHADRLHTLVNQVKGHLEQNNASDLVPHVVT-RLDRDTS 138
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
G V+LA+ + ++ ++++E V+K YLA P GI++ IN AP +G +
Sbjct: 139 GIVLLAKHRFAHAVMDQQLQEHTVEKFYLAY-----PSGILSEDHGDIN-APIGRVDGDF 192
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ + EV E K + V + Y E+ P K++L TGRTHQ+R G
Sbjct: 193 IKR-EVREDGKPSRTEYWVERRYD-ENGEQP----MTRVKVQLHTGRTHQIRVHFKNIGH 246
Query: 395 PIVGDSMY 402
P+VGD +Y
Sbjct: 247 PLVGDDLY 254
>gi|339624323|ref|ZP_08660112.1| ribosomal large subunit pseudouridine synthase A [Fructobacillus
fructosus KCTC 3544]
Length = 300
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 40/201 (19%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATF------ASRALGLTTPLRT--THQIDN 271
I+ E +V++K G + + E++ F AS P + TH++D
Sbjct: 87 IVFENEDLLVVNKAEGMKMHPHSPTEEDTLLNFVQAYLDASHGTSANQPAKAFMTHRLDR 146
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP----- 326
T G V++A+ I +R+I++K KK Y+A T + T + +PI + P
Sbjct: 147 ATSGLVLIAKNPLAVPILNRQIKDKVAKKTYIAKVTGFFKTKVGT-FTQPIGLHPSESRL 205
Query: 327 ---RLVSEGWY--LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
R + EG L +V+ DA+ ++ ++ L TGR
Sbjct: 206 RAIRPLEEGGQPALTHYQVLSQ------DASTHESL---------------VQLDLETGR 244
Query: 382 THQVRAQLAACGAPIVGDSMY 402
HQ+R LAA G PIVGD +Y
Sbjct: 245 MHQLRLHLAAAGHPIVGDDLY 265
>gi|335044303|ref|ZP_08537328.1| pseudouridylate synthase, 23S RNA-specific [Methylophaga
aminisulfidivorans MP]
gi|333787549|gb|EGL53433.1| pseudouridylate synthase, 23S RNA-specific [Methylophaga
aminisulfidivorans MP]
Length = 318
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 193 VEAGTYLRV---HVHPKRFPRCYDIDWNSRIIAVT----ESHVVLDKPAGTSVGGTTDNI 245
+EAG +RV V K P + +++A ++ +VL+KP+G +V T
Sbjct: 63 IEAGDVIRVPPLQVSEKTAPTEINESLQQQLLASIIFEDDAMLVLNKPSGLAVHAGT--- 119
Query: 246 EESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
A L P + H++D T GC+++A+++E +++ ++ K
Sbjct: 120 --QIQVGVIEAFRLIKPELEFIELVHRLDRDTSGCLLIAKSRESLLNLQQQMLSDQIDKR 177
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIED 361
YL L + G + +P+ VS G + +++ P+ K I+
Sbjct: 178 YLTLLKGEMNSG-EVYIEQPLQ--KNTVSSGERMVKVD---------PEGKSAKTLFIKR 225
Query: 362 CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ A ++KL TGRTHQ+R A G P+ GD Y
Sbjct: 226 QSY---SIAQLSEVKLFTGRTHQIRVHSAWSGHPVAGDDKY 263
>gi|241949279|ref|XP_002417362.1| DRAP deaminase, putative; hydrolase, putative [Candida dubliniensis
CD36]
gi|223640700|emb|CAX45011.1| DRAP deaminase, putative [Candida dubliniensis CD36]
Length = 405
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 216 WNSRIIAVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+N I ++ E + +V+DKP+G T + S + + + + + T H++D T
Sbjct: 103 YNDIIKSIYEDNEILVVDKPSGIPTHPTGNYYHNSLSEIIKQQYNMDS-IWTCHRLDKVT 161
Query: 274 EGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
G +VLA+T+ F + +R+ K KK YLA + P GI Y PI V+
Sbjct: 162 SGVLVLAKTKNGGVKFSKLMRDSKQHTKKTYLARVSGKFPEGIH-QYRCPI----FAVNM 216
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
YL + E +P TV + C S K +TG+ HQ+R L
Sbjct: 217 NGYLMSGNMEE---LPTDSTTVFEQIKYNACLDQSL-----IKCIPITGKFHQIRIHLRN 268
Query: 392 CGAPIVGDSMYMP 404
G PIV DS Y P
Sbjct: 269 LGFPIVNDSFYQP 281
>gi|377821360|ref|YP_004977731.1| RluA family pseudouridine synthase [Burkholderia sp. YI23]
gi|357936195|gb|AET89754.1| pseudouridine synthase, RluA family [Burkholderia sp. YI23]
Length = 336
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 40/204 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G +V G + + A L H++D T G ++LA+ +
Sbjct: 113 IVIDKPSGVAVHGGS-GVAFGVIEQLRNARPHAKFLELVHRLDRETSGVLMLAKKRSALV 171
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
H +IRE +V K Y A V G + K P
Sbjct: 172 HLHEQIRENRVDKRYYA------------------------VGHGDWQSDWGRRRAVKAP 207
Query: 348 ---WPDATVGKAYSIEDCGWPS----------RDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ A + I++ G PS RDY + + +L TGRTHQ+R +A+ G
Sbjct: 208 LHKYVAADGERRVRIQENGLPSHTVFNLIERWRDYVW-VEAELKTGRTHQIRVHMASIGL 266
Query: 395 PIVGDSMYMPAAI-AQLSSPGLNP 417
PI GD+ Y A+ +L+ P P
Sbjct: 267 PIAGDAKYGDFALNKELARPSAKP 290
>gi|206889653|ref|YP_002248865.1| pseudouridylate synthase, 23S RNA-specific [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741591|gb|ACI20648.1| pseudouridylate synthase, 23S RNA-specific [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 315
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 44/236 (18%)
Query: 182 KTFRITHVDQIVEAGTY-LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
K+++I D I + + L++ K P+ I ++I + +VL KPAG V
Sbjct: 49 KSYKIKFNDLIEVSDEFSLKLENSEKLIPQNIPI----QVIYKDDYLIVLSKPAGMVVYP 104
Query: 239 --GGTTDNIEESCATFASRALGLTTPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
G + + A + + P R H++D T G +V+A E +
Sbjct: 105 CAGHPDGTLMNALAYHVKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFK 164
Query: 295 EKKVKKLYLALTTAPL--------PVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
++++KK YLAL L PVG + + ++I + E + + EV++ K
Sbjct: 165 KREIKKEYLALVYGQLRGSGKITTPVGRAIYDRKKMSIKSKKAKEA--ITEWEVIKNFK- 221
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+Y + K+K+LTGRTHQ+R ++ G P++GD Y
Sbjct: 222 ---------------------NYTF-LKVKILTGRTHQIRVHFSSIGHPVIGDKTY 255
>gi|406706327|ref|YP_006756680.1| RNA pseudouridylate synthase,S4 domain-containing protein [alpha
proteobacterium HIMB5]
gi|406652103|gb|AFS47503.1| RNA pseudouridylate synthase,S4 domain-containing protein [alpha
proteobacterium HIMB5]
Length = 303
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 27/198 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II E+ VV++K AG SV G T + + F+ + T + H++D T G ++
Sbjct: 92 IIDNNENFVVMNKSAGISVQGGTKSKKNLIDIFSKSEIFQDTKPFSVHRLDKETSGVFII 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSEGWYLCQ 337
A+ +E + R +KV K YLA+ + G + + +++ E
Sbjct: 152 AKNRETAQLLTSLFRMRKVHKTYLAICHGEIEKNSGQFNDMLIRYDNGKKIIEEAK--TT 209
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+V++ + C ++K +TGR HQ+R QL A G I
Sbjct: 210 YKVLDKNSI---------------CSL--------IELKPITGRKHQLRKQLYAIGNSIY 246
Query: 398 GDSMYMPAAIAQLSSPGL 415
GDS Y Q + L
Sbjct: 247 GDSKYSNKFFKQSKNKNL 264
>gi|296136842|ref|YP_003644084.1| RluA family pseudouridine synthase [Thiomonas intermedia K12]
gi|295796964|gb|ADG31754.1| pseudouridine synthase, RluA family [Thiomonas intermedia K12]
Length = 329
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 38/208 (18%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ ++KP G +V GG+ + A A+R L H++D T G +++A+ +
Sbjct: 98 LAINKPEGVAVHGGSGVSFGVIEALRAARPT--AKFLELVHRLDRDTSGLLLIAKKRSAL 155
Query: 287 SIFHRKIREKKVKKLYLALTT-----------APLPVGIMTHYMRPINIAPRLVSEG--W 333
+ H +RE+ K YLAL APL ++ + R + + + E
Sbjct: 156 TTLHAALRERHADKRYLALVAGLWTRGAVMIEAPLHKYLLANGERRVRVDAQQGQESRTQ 215
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+ Q + PW ++ +A +LLTGRTHQ+R LA CG
Sbjct: 216 FRSQEQFALPGLGPWGGLSLMQA-------------------RLLTGRTHQIRVHLAHCG 256
Query: 394 APIVGDSMYMPAAIAQL---SSPGLNPF 418
PIVGD Y ++ L G+ PF
Sbjct: 257 HPIVGDDKYGDDSLNALLARGQAGVPPF 284
>gi|338530001|ref|YP_004663335.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
gi|337256097|gb|AEI62257.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
Length = 314
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 22/184 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +DKPAG S T + +S LG L H++D T G V +T E S
Sbjct: 92 IAVDKPAGVSAQPTEGRVGDSLVDLVGAKLGRAAGL--VHRLDRETSGVTVFGKTAEATS 149
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
RE + +K Y+A T LP P++ P W +
Sbjct: 150 ALAAAFREGRARKRYVAATGPGLPPSGTVDL--PLSKDPSRPGR-WRATRAANGVPALTD 206
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMYMPA 405
+ G A+ C ++LL TGRTHQ+RA L A GAPI+GD+ Y A
Sbjct: 207 FHTLFAGPAF---------------CVVELLPHTGRTHQLRAHLTALGAPILGDARYGGA 251
Query: 406 AIAQ 409
A AQ
Sbjct: 252 ARAQ 255
>gi|50955140|ref|YP_062428.1| ribosomal large subunit pseudouridine synthase [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951622|gb|AAT89323.1| ribosomal large subunit pseudouridine synthase [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 306
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 31/232 (13%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNS-RIIAVTESHVVLDKPAGT 236
REA K+ R+ AG++L V P+ PR I + I+ + VVLDKPAG
Sbjct: 46 REAGKSDRL-------PAGSWLDVTWQPREEPRIVPIVVSELTIVHEDDDIVVLDKPAGV 98
Query: 237 ----SVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCVVLARTQEYCSIFH 290
S+G + + A R P R H++D T G +V+A+++ ++
Sbjct: 99 AAHPSIGWEGPTVLGALAAAGFRISTSGAPERAGIVHRLDAGTSGLMVVAKSEHAYTVLK 158
Query: 291 RKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPD 350
R ++ V+K+Y A+ P + PI P+ W + V+ K
Sbjct: 159 RAFHDRTVEKIYHAVVQG-HPDPLTGTIDAPIGRHPK---SDW---RFAVVAGGK----- 206
Query: 351 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+V +IE +P+ A +I L TGRTHQ+R ++A P VGD+MY
Sbjct: 207 PSVTHYETIE--AFPA---ASLLEIHLETGRTHQIRVHMSAQRHPCVGDAMY 253
>gi|83312904|ref|YP_423168.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947745|dbj|BAE52609.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 229
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 15/187 (8%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
SR++ + +VLDKPAG +V ++ + + A G + H++D T GC+
Sbjct: 8 SRVLYKDQDVIVLDKPAGLAVHAGPNSPDHLELYLGALAFGWAEMPKLAHRLDRDTSGCL 67
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+L R + + ++V+K+Y +++ T + ++ R +GW +
Sbjct: 68 ILGRHAKAIKRLGKMFEHRRVEKVYWSVSHGSPAADSGTVDAPLLKVSAR--GQGWRIKV 125
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ W + +G++ + W R TGRTHQ+R G P++
Sbjct: 126 DPAGQPSITDW--SVLGRSDGLSWIEWRPR-----------TGRTHQIRIHAQYLGCPLL 172
Query: 398 GDSMYMP 404
GD+ Y P
Sbjct: 173 GDAYYGP 179
>gi|339246467|ref|XP_003374867.1| pseudouridylate synthase 6 [Trichinella spiralis]
gi|316971885|gb|EFV55608.1| pseudouridylate synthase 6 [Trichinella spiralis]
Length = 404
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 55/315 (17%)
Query: 162 DPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRII 221
+ ++L+ R ++ G+ T VD +VE G +R H P +D I+
Sbjct: 88 EEAILAGRVTVNGQP----------TSVDYVVENGDLIRHMCHRHELPV---LDSAVDIV 134
Query: 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
TE +V++KP V S + G+ L+T H++D T G V+ +
Sbjct: 135 TDTEDILVVNKPCSIPVHPCGRYHFNSLVLYLKHIGGMDN-LKTFHRLDRLTSGLVIFLK 193
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM 341
++ +++ E ++KK YL L P + EV+
Sbjct: 194 NEKIEKKLRQQMIENQIKKEYLCLVDGEFP-------------------------EEEVV 228
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC----KIKLL-----TGRTHQVRAQLAAC 392
K + ++G Y D G PS Y+ K +L TGRTHQ+R L
Sbjct: 229 CDKPLDVLSQSMGIMYITAD-GKPSLTKFYKLFSDGKTSILKCCPETGRTHQIRVHLQYL 287
Query: 393 GAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG-MEPSVAIG 451
G PIV D +Y + + L +GK E +WI + ++P+
Sbjct: 288 GYPIVNDYIYNNSDAFGPNKGKLCDYGKSLDELREVVKTCFTAEKWIDRKSTVDPT---K 344
Query: 452 LQACHISWDDGECCY 466
+ C SW + EC +
Sbjct: 345 FENC--SWFNVECHF 357
>gi|110678758|ref|YP_681765.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
gi|109454874|gb|ABG31079.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
Length = 346
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 12/183 (6%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ ++KPAG G + + G R H++D T G ++LART+
Sbjct: 97 DDHIIAINKPAGLPTQGGSGQTRHVDGLAEALKFGFEDKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
+R K+ +K+Y AL G+ T Y+ I A LV E +
Sbjct: 157 MAAKALTTAMRHKETRKIYWALV-----AGVPTPYLGEIRYA--LVKAQGRGRGGEGEKM 209
Query: 344 KKVP--WPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+P D T G +A+++ + A ++ +TGRTHQ+RA +A G PI+GD
Sbjct: 210 IALPPREVDETPGAKRAHTLYATLYRVGSRASWVAMEPITGRTHQLRAHMAEIGHPIIGD 269
Query: 400 SMY 402
Y
Sbjct: 270 GKY 272
>gi|33519868|ref|NP_878700.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Blochmannia floridanus]
gi|33504213|emb|CAD83475.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Blochmannia floridanus]
Length = 322
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 16/200 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG-LTTPLRTTHQIDNCTEGCVV 278
+I E +VL+KP+G SV G DN + A R L L H++D T G ++
Sbjct: 94 VIYEDEHLLVLNKPSGISVHGGGDNKLQLNIIDALRMLRPKIRFLWLVHRLDRDTSGLLL 153
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+A+++ H ++R +K++K YLA+ I + I+ L + Y+ +
Sbjct: 154 IAKSRIVLIKLHEQLRLQKIQKTYLAIVYGSWDTHITS-------ISAPLFKKKDYIKNI 206
Query: 339 EVMECKKVPWPDATVGK-AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
V+ + D+ GK A + ++ A I +TGRTHQ+R PI+
Sbjct: 207 NVV------FIDSKFGKLAQTCFQVKERFKNIATLLNIIPITGRTHQIRVHTQYAQCPII 260
Query: 398 GDSMYMPAAI-AQLSSPGLN 416
GD +Y + Q G N
Sbjct: 261 GDHVYGKQKVNVQFKKLGWN 280
>gi|83950496|ref|ZP_00959229.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
gi|83838395|gb|EAP77691.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
Length = 346
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 8/181 (4%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + L R H++D T G ++LART+
Sbjct: 96 DDHIIALNKPPGLPVQGGSKQTRHVDGLAEALRFDLDEKPRLVHRLDKDTSGVLILARTR 155
Query: 284 EYCSIFHRKIREKKVKKLY-LALTTAPLP-VGIMTHYMRPINIAPRLVSEGWYLCQLEVM 341
+ + R + +K+Y A+ PLP +G + + + + LC +
Sbjct: 156 QMAADLTAAFRHRNTRKIYWAAVAGVPLPRMGTVKYGLVKAPGHGKGGEGEKMLC-IHPR 214
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
E P +E+ G + A+ + + TGRTHQ+RA +A G PIVGD
Sbjct: 215 EVDNTPGAKHATSDYAVLENAG---QRTAWMALVPV-TGRTHQLRAHMAELGHPIVGDGK 270
Query: 402 Y 402
Y
Sbjct: 271 Y 271
>gi|415884374|ref|ZP_11546302.1| pseudouridine synthase, RluA family protein [Bacillus methanolicus
MGA3]
gi|387590043|gb|EIJ82362.1| pseudouridine synthase, RluA family protein [Bacillus methanolicus
MGA3]
Length = 306
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
++ +++ E ++ +KPAG G T+ + + A F +A G ++ H++D
Sbjct: 84 FDVQVLYEDEHLIIFNKPAGMDTHPNEAGQTNTLANAAA-FYLQAKGEAVKIKHIHRLDR 142
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA---------PLPVGIMTHYMRPI 322
T G V+ A+ SI R + E+ +K+ YLA+T LP+G H+ P
Sbjct: 143 DTTGAVLFAKHSLAGSILDRMLEERLIKRTYLAITEGFFQKQSGIINLPIGRDRHH--PT 200
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
++V T Y++ D K +L TGRT
Sbjct: 201 R--------------------RRVSATGQTAVTKYNV--VHILKEDKLSIVKCQLDTGRT 238
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R L++ G P+ GD +Y
Sbjct: 239 HQIRVHLSSIGHPLAGDVLY 258
>gi|384084825|ref|ZP_09996000.1| RluA family pseudouridine synthase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 317
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ +SHV VL+KP+G +V G + I E+ A L H++D T GC
Sbjct: 92 VLFEDSHVLVLNKPSGLAVHGGSGLSWGIIEALRQLRPEA----RELELVHRLDRDTSGC 147
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR--LVSEGWY 334
+VL++ + H +R+ +++K YL LT +G R + +A R + G
Sbjct: 148 LVLSKKRSALRALHEALRQGQMEKQYLTLT-----LGDWKDKTRSVRLALRKNTLQSGER 202
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ +++ ++ K P T +++ + +P A + L TGRTHQ+R L A
Sbjct: 203 MVRVDPVDGK----PAHT---RFTLLEH-FPG---AALLQADLDTGRTHQIRVHLQAIEH 251
Query: 395 PIVGDSMYMPAAIAQ-LSSPGLN 416
P+ GD Y AA Q + S GL
Sbjct: 252 PVAGDEKYGDAAFNQRMRSLGLR 274
>gi|251792493|ref|YP_003007219.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus NJ8700]
gi|422336047|ref|ZP_16417020.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus F0387]
gi|247533886|gb|ACS97132.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus NJ8700]
gi|353346233|gb|EHB90518.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus F0387]
Length = 238
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV D+ + ++ LG+ + H++D T G ++LA ++
Sbjct: 13 IVINKPNGISV--HKDHADVGLTRLVAQQLGVPQ-VWLVHRLDKVTSGLLILALNEKAAV 69
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
RK E +++K+YLAL+T P + A R W LCQ K+ P
Sbjct: 70 TLSRKFAEHQIQKIYLALSTQK-PKKKQGRISGDMQKARR---GAWKLCQ-----SKENP 120
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAPIVGDSMY 402
+I D + S A ++ +L TG+THQ+R + + G+PI+GD +Y
Sbjct: 121 ----------AITD--FVSHSLAPNLRLFILYPKTGKTHQIRVAMKSLGSPILGDELY 166
>gi|444318599|ref|XP_004179957.1| hypothetical protein TBLA_0C06450 [Tetrapisispora blattae CBS 6284]
gi|387512998|emb|CCH60438.1| hypothetical protein TBLA_0C06450 [Tetrapisispora blattae CBS 6284]
Length = 378
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 24/201 (11%)
Query: 207 RFPRCYDIDWNSR---IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
++P C D+ N I+ + + +V+DKP+G V T + LG L
Sbjct: 101 QWPSCGDLVENILGVPIVFKSSNLLVIDKPSGLPVHPTGQYFYNTLTKVLE--LGDFPSL 158
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
R ++D T G +VLAR E +KI+E V KLY A ++H
Sbjct: 159 RPAFRLDKPTSGLLVLARDTETAGTIQKKIKEHSVTKLYFARVKGKFQDIPLSHSSSIFT 218
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI--KLLTGR 381
I + +G + ++ + + E W E I K +TGR
Sbjct: 219 IELKRTFDGAF-----------------SIPRDATTEFSLWKYSPKLDESIILCKPITGR 261
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R LA G PI+ D +
Sbjct: 262 THQIRIHLARLGFPIINDPFF 282
>gi|383767080|ref|YP_005446061.1| putative pseudouridine synthase [Phycisphaera mikurensis NBRC
102666]
gi|381387348|dbj|BAM04164.1| putative pseudouridine synthase [Phycisphaera mikurensis NBRC
102666]
Length = 265
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 76/190 (40%), Gaps = 34/190 (17%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRA-----------LGLTTPLRT--THQIDNCTEG 275
VLDKPAG V IEE+ + A +G PLR+ H+ID T G
Sbjct: 59 VLDKPAGQDV--HPLKIEEAGTLLQAAAGRYPELLRGGGVGREGPLRSGVVHRIDGVTSG 116
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR---LVSEG 332
CVVLART + +V+K YLA G + M + P +V
Sbjct: 117 CVVLARTDDAWDALRDAFARHRVRKTYLARVAGRPGAGRLNAPMAVVKHRPARAGVVGSA 176
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
M + W + T A S+ ++ L TG HQVRA LA
Sbjct: 177 DGRGHATAMSWSEHHWDEQT---AQSV-------------LRVDLETGFLHQVRAGLAHL 220
Query: 393 GAPIVGDSMY 402
G P+VGD +Y
Sbjct: 221 GHPVVGDWLY 230
>gi|154498138|ref|ZP_02036516.1| hypothetical protein BACCAP_02119 [Bacteroides capillosus ATCC
29799]
gi|150273128|gb|EDN00285.1| pseudouridine synthase, RluA family [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 321
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 40/149 (26%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
++ID T G V+ A+ E I ++KI+++++ K YLA+ M P P
Sbjct: 144 NRIDRNTGGIVIAAKNAETLRIMNQKIKDREIDKFYLAVVLGK---------MNP----P 190
Query: 327 RLVSEGWYLCQLEVMECKKV---PWPDA----------TVGKAYSIEDCGWPSRDYAYEC 373
EG +L + EV + V P PD VG S+ +C
Sbjct: 191 EGRLEG-FLVKDEVKKQVTVYHHPVPDGRTALTVYKTLKVGNGLSLVEC----------- 238
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+LLTGRTHQ+RAQ A G P++GD Y
Sbjct: 239 --ELLTGRTHQIRAQFADAGHPLLGDGKY 265
>gi|333395870|ref|ZP_08477687.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 293
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 25/182 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP GT + ++S + LG +P H++D T G +V+A+
Sbjct: 96 LVVDKPIGTKTHPNRPDEQDSLMNHVTAYLG--SPAYVVHRLDRDTSGAIVIAKNPVVLP 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV-GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
I +R I K++ + Y A LP G ++ PI P L+ + ++V
Sbjct: 154 ILNRLISSKRITRQYRAWVHGHLPASGTIS---LPIGRDP-----------LDKRK-RQV 198
Query: 347 PWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
PDA + ++ S I+L TGRTHQ+R + G P+VGD +Y P
Sbjct: 199 DGPDAVAAITHYRVLQQTATKSL-----LAIQLETGRTHQIRVHFSYLGHPLVGDVLYDP 253
Query: 405 AA 406
A
Sbjct: 254 QA 255
>gi|301052930|ref|YP_003791141.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|300375099|gb|ADK04003.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
Length = 307
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E G+ + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVE--GYFKKQNVTLVTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|410446729|ref|ZP_11300832.1| pseudouridine synthase, RluA family [SAR86 cluster bacterium
SAR86E]
gi|409980401|gb|EKO37152.1| pseudouridine synthase, RluA family [SAR86 cluster bacterium
SAR86E]
Length = 313
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 33/203 (16%)
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN----IEESCATFASRALGLTTP 262
+ P I++ S II + ++++K G SV T+N ++ + A F S + L
Sbjct: 78 KIPSSRLIEFESSIIDQNDDFILVNKEPGLSVHSGTNNQFGLVDIARAKFPSLEIDLC-- 135
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
H+ID T GCV+L++ + + FH+++ V K Y A+ +G+M + I
Sbjct: 136 ----HRIDKSTSGCVLLSKNKLFLRHFHKQLINNNVTKKYEAIL-----IGVMK---KNI 183
Query: 323 NIAPRLVS---EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
+ +L S E ++ Q + K + + K Y + + Y +I + T
Sbjct: 184 KVESKLDSSTKEHFHKVQESIAGKKAISA--FKILKKYKL---------FTY-VEIIIST 231
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GR HQ+R Q + PIV D Y
Sbjct: 232 GRMHQIRVQSSNLNHPIVNDKKY 254
>gi|366086494|ref|ZP_09452979.1| pseudouridine synthase [Lactobacillus zeae KCTC 3804]
Length = 300
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ ++V++KPAG + +G D++ + + + + ++D T G +V A
Sbjct: 84 DDYLVVNKPAGVASIPAIGRKNDSMANMVKAYLIKTHAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ R++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHSLAHSLLDRQLHSEAFLKQYVAIVTAKSPLPAHGWIVLPIG-----VSQGFYMRRIV- 197
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
+T GK E A + L TGRTHQ+R AA G + GD
Sbjct: 198 ----------STTGKPSVTEYRTLAQTSQAAAVLVTLHTGRTHQIRVHFAAIGHVLFGDD 247
Query: 401 MY 402
+Y
Sbjct: 248 LY 249
>gi|153938225|ref|YP_001390782.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
Langeland]
gi|168180094|ref|ZP_02614758.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|170754896|ref|YP_001781073.1| RluA family pseudouridine synthase [Clostridium botulinum B1 str.
Okra]
gi|226948698|ref|YP_002803789.1| RluA family pseudouridine synthase [Clostridium botulinum A2 str.
Kyoto]
gi|384461837|ref|YP_005674432.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
230613]
gi|429246994|ref|ZP_19210271.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
gi|152934121|gb|ABS39619.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
Langeland]
gi|169120108|gb|ACA43944.1| pseudouridine synthase, RluA family [Clostridium botulinum B1 str.
Okra]
gi|182668924|gb|EDT80900.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226843753|gb|ACO86419.1| pseudouridine synthase, RluA family [Clostridium botulinum A2 str.
Kyoto]
gi|295318854|gb|ADF99231.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
230613]
gi|428755976|gb|EKX78570.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLT 260
K+F R ID N +I E+ V+++K G V E + + L G
Sbjct: 68 EKKKFVR---IDNNLKITYEDENMVLVEKWPGVLVHSDKKEGEPTLTDYVLSYLYDKGDY 124
Query: 261 TP-LRTT------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
TP L T +++D T G V+ + E + IR++K++K Y +L + G
Sbjct: 125 TPELEVTFTPASCNRLDRNTSGIVIFGKNYEALKTLNEMIRDRKIEKYYSSLVKGRIKDG 184
Query: 314 IMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
+ Y+ +E + ++ E K P +I+ CG S
Sbjct: 185 VYEAYISK--------NEDTNMSKI-YNEPK--PNTKKIAMNVKTIQTCGSFSF-----I 228
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+I+LLTGR+HQ+RA L G PI+GDS Y +L+S N +G
Sbjct: 229 EIELLTGRSHQLRAHLNHLGNPIIGDSKY---GDKKLNSFFHNKYG 271
>gi|336393990|ref|ZP_08575389.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
Length = 293
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 25/182 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP GT + ++S + LG +P H++D T G +V+A+
Sbjct: 96 LVVDKPIGTKTHPNRPDEQDSLMNHVTAYLG--SPAYVVHRLDRDTSGAIVIAKNPVVLP 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV-GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
I +R I K++ + Y A LP G ++ PI P L+ + ++V
Sbjct: 154 ILNRLISSKRITRQYRAWVHGHLPASGTIS---LPIGRDP-----------LDKRK-RQV 198
Query: 347 PWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
PDA + ++ S I+L TGRTHQ+R + G P+VGD +Y P
Sbjct: 199 DGPDAVAAITHYRVLQQTATKSL-----LAIQLETGRTHQIRVHFSYLGHPLVGDVLYDP 253
Query: 405 AA 406
A
Sbjct: 254 QA 255
>gi|402772320|ref|YP_006591857.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401774340|emb|CCJ07206.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 356
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KP G + G + S A G T P+ H++D T G +++A+ + +
Sbjct: 111 LVLNKPYGLATQGGSGQTRHVDGMLESLAKGDTRPV-LVHRLDRDTSGVLLVAKNRRMAA 169
Query: 288 IFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R ++ KK+Y AL P P G ++ Y+ A S G +LE M K
Sbjct: 170 ELGEIFRSRQAKKIYWALVEGVPKPAQGRISLYL--AKGAGMEKSRGGA-RELEKMRVAK 226
Query: 346 VPWPDATVGKAY-SIED-----CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
DA Y +I D C W S +K LTGRTHQ+RA A G PI GD
Sbjct: 227 HGEADAQHSLTYYAIVDKVAPRCAWLS--------MKPLTGRTHQLRAHAEAIGHPIFGD 278
Query: 400 SMY 402
Y
Sbjct: 279 PKY 281
>gi|440298171|gb|ELP90812.1| ribosomal large subunit pseudouridine synthase C, putative
[Entamoeba invadens IP1]
Length = 362
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 200 RVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL 259
R+H H P D + II T+ ++V++KPAG V T + S T G
Sbjct: 87 RIHAHEPPVP-----DHHIDIIEDTDEYLVINKPAGIPVHPTGRYMYNSIITILKEE-GK 140
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK------KVKKLYLALTTAPLPVG 313
L+ +++D T G +VLA+T+ F + +R+K +++K+YLA P
Sbjct: 141 YNDLKLVYRLDKNTSGVLVLAKTKRIAQKFQKALRDKTVGDFQEIEKIYLARVVGEFPET 200
Query: 314 IMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
++ +PI++ + ++ + K + KA S EC
Sbjct: 201 LVVD--KPIHLVVFGTEQQHHVSDEGI--SAKSGFKRIFYDKA---------SDTSVVEC 247
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
TGRTHQ+R L + G PI DS Y+ I
Sbjct: 248 --VPYTGRTHQLRLHLKSVGHPIANDSAYLLEHI 279
>gi|431929968|ref|YP_007243014.1| RluA family pseudouridine synthase [Thioflavicoccus mobilis 8321]
gi|431828271|gb|AGA89384.1| pseudouridine synthase, RluA family [Thioflavicoccus mobilis 8321]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKPAG +V G + + RA L H++D T GC+++++ +
Sbjct: 103 LVIDKPAGLAVHGGS-GLSHGLIELL-RAARPAQELELVHRLDRDTSGCLLVSKRRSALR 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR--LVSEGWYLCQLEVMECKK 345
HR +R+K V K YLAL LP +T + A R ++ G + +++ ++ K
Sbjct: 161 ELHRLLRDKAVDKRYLALLVGRLPRAEVT-----VEAALRKNVLQGGERVVRVDEVDGK- 214
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPA 405
P T + S A + +L+TGRTHQ+R A G P+ GD Y A
Sbjct: 215 ---PARTCFRRLR-------SLPGATLVEAQLVTGRTHQIRVHAAHLGLPLAGDEKYGDA 264
>gi|404494901|ref|YP_006719007.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|418067555|ref|ZP_12704894.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78192530|gb|ABB30297.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|373558553|gb|EHP84889.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 295
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 62/250 (24%)
Query: 171 SIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV-HPKRFPR-CYDIDWNSRIIAVTESHV 228
++ G VR A +T R AG + + V P+R+ Y D ++ + ++
Sbjct: 42 AVAGAMVRVASRTLR---------AGEEIVLGVMEPERYQELAYTRD---DLLFENDDYL 89
Query: 229 VLDKPAGTSVGGTTDNIE---ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
++K AG + T ++ E T R LG P R H++D T G ++ +T+
Sbjct: 90 AVNKAAGLNCQRTPYQLKGTVEHAVTLYLRTLGSQEPARVIHRLDRGTSGVMIFPKTKRA 149
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
+ +++E +V+K+Y AL TA S+ W +
Sbjct: 150 AAHISAQLKEGRVEKVYWALVTA------------------EPASDQW-----------E 180
Query: 346 VPWPDATVGKA-YSIEDCGWPSRDYAYECKI------------KLLTGRTHQVRAQLAAC 392
V P A VG A Y + P R+ + + LTGRTHQ+R LA C
Sbjct: 181 VNAPIAKVGSARYGVAT---PGREALTRFAVIARGTCGVLVEARPLTGRTHQIRVHLAHC 237
Query: 393 GAPIVGDSMY 402
G PIVGD Y
Sbjct: 238 GLPIVGDPTY 247
>gi|21672612|ref|NP_660679.1| ribosomal large subunit pseudouridine synthase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25091178|sp|Q8K9J8.1|RLUC_BUCAP RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|21623244|gb|AAM67890.1| ribosomal large subunit pseudouridine synthase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 314
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP+G +V G + I + + L L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGS-GINLGVIEYFRKIRPLEKFLELVHRIDRDTSGVLMLAKKRRSLL 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
H++IREKKV+K Y+AL P+ + R VSE L+ + K +
Sbjct: 161 SLHKQIREKKVQKKYIALVHGLWPLSL------------RKVSEPLLKTHLKNKQRKILI 208
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMY 402
+ + Y + Y + + + TGRTHQ+R G PI+ D Y
Sbjct: 209 NKEGKPAETYF-----KIKKQYLFTTLVSITPKTGRTHQIRVHTLHAGHPILFDKRY 260
>gi|383453341|ref|YP_005367330.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
gi|380734165|gb|AFE10167.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
Length = 312
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +DKPAG + T + S S LG L H++D T G V +T S
Sbjct: 92 IAVDKPAGLNAQPTEGRVGGSLVDLVSEHLGRQAGL--VHRLDRETSGVTVFGKTPAATS 149
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
RE +K YLA T LP G P++ P W + VP
Sbjct: 150 ALAEAFREGTARKRYLAATGPGLPAGGTVDL--PLSKDPSRPGR-WRATR----AANGVP 202
Query: 348 -WPD---ATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSM 401
W D G+A+S+ ++LL TGRTHQ+RA L A PI+GDS
Sbjct: 203 AWTDYRTLFAGEAFSL---------------VELLPRTGRTHQLRAHLTALEHPILGDSR 247
Query: 402 Y 402
Y
Sbjct: 248 Y 248
>gi|406944303|gb|EKD76107.1| hypothetical protein ACD_43C00224G0004 [uncultured bacterium]
Length = 258
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 27/205 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT----------HQI 269
IIA T +VV++KPAG + T + T + LGL L ++
Sbjct: 35 IIADTADYVVINKPAGVVIHQT--QVHPEPDTVVNGLLGLYPELAAVGDDPQRPGIVQRL 92
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D G +V+A+TQ + ++ V K YLAL G + I +
Sbjct: 93 DQFVSGVMVVAKTQTMFEYLKSQFQQHHVYKRYLALAH-----GKFSQAGGEIRFS---- 143
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+ + E K PD + A + + Y Y ++++ TGRTHQ+R L
Sbjct: 144 -----IARSEKNFIKMAARPDDSGKAAVTKYTVLKQYQQYTY-LELEIATGRTHQIRVHL 197
Query: 390 AACGAPIVGDSMYMPAAIAQLSSPG 414
A G P+VG+++Y+P PG
Sbjct: 198 NALGHPLVGETVYLPKNFHSRLQPG 222
>gi|254476979|ref|ZP_05090365.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
gi|214031222|gb|EEB72057.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
Length = 348
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 30/229 (13%)
Query: 193 VEAGTYLRV------HVHPKRFPRCYDIDWNSR-----IIAVTESHVVLDKPAGTSVGGT 241
VEAG +RV + P P D +++ +I ++ +VL+KPAG +V G
Sbjct: 56 VEAGQTVRVPPLPASDLKPAEAPSRRISDADAKMIRGCVIYKDDAVIVLNKPAGLAVQGG 115
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+ + + R H++D T G +VLART++ R +K+
Sbjct: 116 SGTTKHVDGLSEALKFDAEEKPRLVHRLDKDTSGVLVLARTRQAAQALTAAFRHHATRKI 175
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLV--------SEGWYLCQLEVMECKKVPWPDATV 353
Y AL G+ T Y+ I LV EG + + E P
Sbjct: 176 YWALV-----AGVPTPYLGEIKCG--LVKAPGHGKSGEGEKMIAIHSNEVDSTP----GA 224
Query: 354 GKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++++ + A ++ +TGRTHQ+RA +A G PI GD Y
Sbjct: 225 KRSHTQYATLYRVASRAAWVAMEPITGRTHQLRAHMAEIGHPIAGDGKY 273
>gi|423455161|ref|ZP_17432014.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|401134944|gb|EJQ42551.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
Length = 307
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYGVEPEYGELNVVFEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
P+G + GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEQMDTHPSGKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ +I R + E+K+K+ Y AL + T + E +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYTALVEGKVKKKQGT------------IDEAIGRDRHHATR 200
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ P D + Y +E + + A ++L TGRTHQ+R ++ G P+VGD +Y
Sbjct: 201 RRVSPKGDQAI-TYYKVEK--YFKKQNATLVTLQLETGRTHQIRVHMSYNGNPLVGDVLY 257
>gi|196004434|ref|XP_002112084.1| hypothetical protein TRIADDRAFT_1807 [Trichoplax adhaerens]
gi|190585983|gb|EDV26051.1| hypothetical protein TRIADDRAFT_1807, partial [Trichoplax
adhaerens]
Length = 418
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II + + VV++KPA V S +R GL L T H++D T G ++
Sbjct: 101 QIIKMDDDIVVINKPASIPVHPCGRYRHNSVVFMLARDYGLQN-LHTIHRLDRLTSGILI 159
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
ART + +++R+++++K Y+ P + PI++ VS +C++
Sbjct: 160 FARTLQKAQELEKQVRDRQIEKQYVCRVDGEFPTETID-CKEPIDV----VSHKLGVCRV 214
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL-----LTGRTHQVRAQLAACG 393
+ GK+ C + +Y K L LTGR HQ+R L G
Sbjct: 215 ------------SPKGKS-----CQTIFQRLSYNGKTSLVKCIPLTGRMHQIRVHLQWLG 257
Query: 394 APIVGDSMYMPAA 406
PIV D +Y A
Sbjct: 258 YPIVNDPIYNHEA 270
>gi|209963759|ref|YP_002296674.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957225|gb|ACI97861.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
Length = 336
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+ +R++ +VLDKPAG + G T+ ++ A + + H++D T
Sbjct: 96 ELRARVLFRDHDVIVLDKPAGLATQGGTNQVKHLDAMLDALKFEAEGRPKLVHRLDKDTS 155
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
GC+VLAR+ + R ++ +K+Y A+T VG+ I++ P G
Sbjct: 156 GCLVLARSAAAAAKLTAAFRSREARKIYWAVT-----VGVPKPMKGRIDL-PVAKEAGTR 209
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCG----WPSRDYAYECKIKLLTGRTHQVRAQLA 390
++ V E + V ++ + WP TGRTHQ+R +A
Sbjct: 210 GERMTVDEDEGVHAITYYTVLEHAHKQAAFVALWPR------------TGRTHQLRVHMA 257
Query: 391 ACGAPIVGDSMY 402
A G PI+GD Y
Sbjct: 258 ALGTPILGDGKY 269
>gi|407783425|ref|ZP_11130626.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
gi|407202150|gb|EKE72145.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
Length = 222
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 16/190 (8%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +++DKPAG A F + GL P H++D T GC
Sbjct: 2 QARVLHRDGLMLIIDKPAGLPCHAGPKGGPNLEAQFDALRFGLPKPPSLAHRLDRDTSGC 61
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
+VL R ++ + R + K Y A+ P H RP++ + GW +
Sbjct: 62 LVLGRHRKALAKLGRLFSSGGIDKTYWAVVAGG-PQEEAGHIDRPLSKLNK--KSGWKMV 118
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ + + +G++ I C W ++K LTGRTHQ+R ++ G PI
Sbjct: 119 VDPQGQPSQTDF--RVLGRSEGI--C-W--------LELKPLTGRTHQLRIHCSSMGWPI 165
Query: 397 VGDSMYMPAA 406
+GD +Y P A
Sbjct: 166 LGDPVYGPVA 175
>gi|195051252|ref|XP_001993060.1| GH13297 [Drosophila grimshawi]
gi|193900119|gb|EDV98985.1| GH13297 [Drosophila grimshawi]
Length = 562
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + + +V++KPA V + ++ + LRT H++D T G ++
Sbjct: 235 IVHMDDDILVVNKPASIPVHPCGRYRHNTMIFILAKEFNMRN-LRTIHRLDRLTSGLLLF 293
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL- 338
RT E ++IR ++V+K Y+ P G + PI + VS +C++
Sbjct: 294 GRTAEKAREMEQQIRNRQVQKEYVCCVEGCFPDGNI-ECNEPIEV----VSYKIGVCKVS 348
Query: 339 -EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ +CK VG YSI C K LTGR HQ+R L G PIV
Sbjct: 349 PKGKDCKTTFKRLGQVGD-YSIVQC-------------KPLTGRMHQIRVHLQYLGYPIV 394
Query: 398 GDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y L G + GK + D
Sbjct: 395 NDPLYNHEVFGPLKGRGGDIGGKSDDQLIRD 425
>gi|319948901|ref|ZP_08023012.1| ribosomal pseudouridine synthase [Dietzia cinnamea P4]
gi|319437439|gb|EFV92448.1| ribosomal pseudouridine synthase [Dietzia cinnamea P4]
Length = 332
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
VV+DKP + ++ E+ R LGL L H++D T G +V Y
Sbjct: 104 VVVDKPHFLATTPRAGHVTETALVRLRRDLGLDD-LAPAHRLDRLTAGVLVFTADPAYRG 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ ++V K YLA+ AP P G+ T R I L + G V++ +V
Sbjct: 163 AYQDLFAARRVTKTYLAV--APAPDGVATVRERSSRI---LKTRG-------VLQATEVD 210
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
PDA P R Y +++ TGRTHQ+R + A G PI+GD +Y
Sbjct: 211 GEPDAHTRITLLDTRGAGPDRLGLY--RLEPTTGRTHQLRVHMNALGTPILGDDLY 264
>gi|298713714|emb|CBJ48905.1| putative RNA pseudouridylate synthase [Ectocarpus siliculosus]
Length = 555
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 43/194 (22%)
Query: 91 PCPSQNCPPR--VEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP--- 145
P P N PP V H GP+ + L LI FG VYY KP
Sbjct: 37 PLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYY-----KPGGA 91
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P A P K DP D+ VE G YLR+ P
Sbjct: 92 PALAKP------KRELDP--------------------------DREVEIGEYLRIFPEP 119
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+R+P +DW S+I+ ++++KPAG T DN E+ R++ L
Sbjct: 120 RRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLA-GIRSVRPDLDLLL 178
Query: 266 THQIDNCTEGCVVL 279
H++D T G V++
Sbjct: 179 PHRLDIDTSGLVIV 192
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 61/137 (44%), Gaps = 24/137 (17%)
Query: 333 WYLCQLEVMECKKVP---------WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
W C+L V+ + +P T G G S E +++LLTGRTH
Sbjct: 400 WIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGGIGDGGVSTGMLQEVEVQLLTGRTH 459
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG 443
Q+R QLAA G PI GD +Y PA + PGL Q + D++ S+ G
Sbjct: 460 QIRGQLAAEGCPIYGDYLYGPAE-ESVRQPGL------QAGFQRDEND--------SRSG 504
Query: 444 MEPSVAIGLQACHISWD 460
S + LQA HIS +
Sbjct: 505 FVESPKMALQASHISLE 521
>gi|77462289|ref|YP_351793.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332560170|ref|ZP_08414492.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
gi|77386707|gb|ABA77892.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332277882|gb|EGJ23197.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
Length = 346
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 100 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 159
Query: 287 SIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R + +K+Y AL P P Y + AP G L + K
Sbjct: 160 RALSESFRHRNTRKIYWALVAGVPSPKQGSIKYA--LMKAPGHGRGGEGEKMLCIHPAKV 217
Query: 346 VPWPDATVGKA------YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+P+A + + C W + +TGRTHQ+RA +A G PIVGD
Sbjct: 218 GDYPEAKRAQTDFFTLWFLGSRCAW--------MALSPITGRTHQLRAHMAELGHPIVGD 269
Query: 400 SMY 402
Y
Sbjct: 270 GKY 272
>gi|365843453|ref|ZP_09384371.1| pseudouridine synthase, RluA family [Flavonifractor plautii ATCC
29863]
gi|364571378|gb|EHM48966.1| pseudouridine synthase, RluA family [Flavonifractor plautii ATCC
29863]
Length = 323
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 24/141 (17%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
++ID T G V+ A+ E I ++KIR++++ K YLA I+ M+P
Sbjct: 144 NRIDRNTGGIVMAAKNAETLRILNQKIRDREIAKFYLA---------IVHGRMKP----S 190
Query: 327 RLVSEGWYL-----CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ EG+ L Q++V + VP + ++ G S EC+ LLTGR
Sbjct: 191 QGKLEGFLLKDEDQAQVKVF-SRPVPGGKSAATLYKTLRTAGGLS---LVECE--LLTGR 244
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+RAQ AA G P++GD Y
Sbjct: 245 THQIRAQFAAAGHPLLGDGKY 265
>gi|373115169|ref|ZP_09529346.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670644|gb|EHO35722.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
7_1_58FAA]
Length = 323
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 24/141 (17%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
++ID T G V+ A+ E I ++KIR++++ K YLA I+ M+P
Sbjct: 144 NRIDRNTGGIVMAAKNAETLRILNQKIRDREIAKFYLA---------IVHGRMKP----S 190
Query: 327 RLVSEGWYL-----CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ EG+ L Q++V + VP + ++ G S EC+ LLTGR
Sbjct: 191 QGKLEGFLLKDEDRAQVKVF-SRPVPGGKSAATLYKTLRTAGGLS---LVECE--LLTGR 244
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+RAQ AA G P++GD Y
Sbjct: 245 THQIRAQFAAAGHPLLGDGKY 265
>gi|221638143|ref|YP_002524405.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
gi|221158924|gb|ACL99903.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
Length = 343
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 97 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 156
Query: 287 SIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R + +K+Y AL P P Y + AP G L + K
Sbjct: 157 RALSESFRHRNTRKIYWALVAGVPSPKQGSIKYA--LMKAPGHGRGGEGEKMLCIHPAKV 214
Query: 346 VPWPDATVGKA------YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+P+A + + C W + +TGRTHQ+RA +A G PIVGD
Sbjct: 215 GDYPEAKRAQTDFFTLWFLGSRCAW--------MALSPITGRTHQLRAHMAELGHPIVGD 266
Query: 400 SMY 402
Y
Sbjct: 267 GKY 269
>gi|405355381|ref|ZP_11024607.1| Ribosomal large subunit pseudouridine synthase D [Chondromyces
apiculatus DSM 436]
gi|397091723|gb|EJJ22525.1| Ribosomal large subunit pseudouridine synthase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 314
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 22/177 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +DKPAG + T + S LG P H++D T G V ++ E S
Sbjct: 92 IAVDKPAGVTAQPTEGRVGGSLVDLVGEKLG--RPAGLVHRLDRETSGVTVFGKSAEATS 149
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ RE + +K Y+A+ LP+ P++ P W + VP
Sbjct: 150 ALAAEFREGRARKRYVAVAGPGLPLNGTVDL--PLSKDPSRPGR-WRATR----AANGVP 202
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMY 402
++ D A+ C ++LL TGRTHQ+RA L A GAPI+GD+ Y
Sbjct: 203 ----------ALTDFHTLFSGPAF-CVVELLPHTGRTHQLRAHLTALGAPILGDARY 248
>gi|359683949|ref|ZP_09253950.1| pseudouridylate synthase [Leptospira santarosai str. 2000030832]
gi|421111589|ref|ZP_15572063.1| RNA pseudouridine synthase [Leptospira santarosai str. JET]
gi|410802998|gb|EKS09142.1| RNA pseudouridine synthase [Leptospira santarosai str. JET]
Length = 254
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI+ ES++ +KP G V T D+ E+ A + L L LRT +++D T G
Sbjct: 6 LNIRILYENESYIFAEKPPGIPVHATKDSKRENFADILQKQLSLDY-LRTVNRLDLETSG 64
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGW 333
V + + R + K K+YL + + +P + T Y++ N R V G
Sbjct: 65 LVFFCKNPDKNKEADRIL--KTSVKIYLCVVSGTIPEEHFLETCYIKDGNKKVRKVFSGG 122
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E + K+ P +V A KL TGR HQ+R L+ G
Sbjct: 123 DKAVTEFLTLKQNPKERYSVLLA-------------------KLHTGRRHQIRLHLSEKG 163
Query: 394 APIVGDSMY 402
PI+GD +Y
Sbjct: 164 FPILGDRVY 172
>gi|418744309|ref|ZP_13300665.1| RNA pseudouridine synthase [Leptospira santarosai str. CBC379]
gi|418752826|ref|ZP_13309083.1| RNA pseudouridine synthase [Leptospira santarosai str. MOR084]
gi|409966778|gb|EKO34618.1| RNA pseudouridine synthase [Leptospira santarosai str. MOR084]
gi|410794760|gb|EKR92660.1| RNA pseudouridine synthase [Leptospira santarosai str. CBC379]
Length = 254
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI+ ES++ +KP G V T D+ E+ A + L L LRT +++D T G
Sbjct: 6 LNIRILYENESYIFAEKPPGIPVHATKDSKRENFADILQKQLSLDY-LRTVNRLDLETSG 64
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGW 333
V + + R + K K+YL + + +P + T Y++ N R V G
Sbjct: 65 LVFFCKNPDKNKEADRIL--KTSVKIYLCVVSGTIPEEHFLETCYIKDGNKKVRKVFSGG 122
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E + K+ P +V A KL TGR HQ+R L+ G
Sbjct: 123 DKAVTEFLTLKQNPKERYSVLLA-------------------KLHTGRRHQIRLHLSEKG 163
Query: 394 APIVGDSMY 402
PI+GD +Y
Sbjct: 164 FPILGDRVY 172
>gi|429207722|ref|ZP_19198978.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
gi|428189115|gb|EKX57671.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
Length = 349
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 103 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 162
Query: 287 SIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R + +K+Y AL P P Y + AP G L + K
Sbjct: 163 RALSESFRHRNTRKIYWALVAGVPSPKQGSIKYA--LMKAPGHGRGGEGEKMLCIHPAKV 220
Query: 346 VPWPDATVGKA------YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+P+A + + C W + +TGRTHQ+RA +A G PIVGD
Sbjct: 221 GDYPEAKRAQTDFFTLWFLGSRCAW--------MALSPITGRTHQLRAHMAELGHPIVGD 272
Query: 400 SMY 402
Y
Sbjct: 273 GKY 275
>gi|397170381|ref|ZP_10493797.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
gi|396088048|gb|EJI85642.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
Length = 238
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A T+ VL+K AG S + E+ A L L H++D T G ++
Sbjct: 6 QIVAQTDDFYVLNKAAGVSF-----HSEQGPGLVALAEQQLAQKLYPVHRLDKVTSGLLL 60
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LAR + R +++V+K YLAL+ A P P+ A R W L Q
Sbjct: 61 LARRPGVAAELTRLFAKRQVQKCYLALSAA-RPQKKQGWVKGPMQPARR---GAWRLGQG 116
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
E + P V + Y +D P R + +K TG+THQ+R L + GA I+G
Sbjct: 117 E-----QAPAVTYFVSQGY--QDA--PFRAFL----LKPFTGKTHQLRVALKSVGAAILG 163
Query: 399 DSMY 402
D +Y
Sbjct: 164 DELY 167
>gi|408370137|ref|ZP_11167916.1| pseudouridine synthase [Galbibacter sp. ck-I2-15]
gi|407744612|gb|EKF56180.1| pseudouridine synthase [Galbibacter sp. ck-I2-15]
Length = 230
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGG--TTDN---------IEESCATFASRALGLTTPLRT 265
N +II +V++K AG V G T D I+E + LG+
Sbjct: 9 NLQIIYEDNHIIVINKRAGDLVQGDKTGDTPLADIVKAYIKEKYQKPGNVYLGVV----- 63
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPIN 323
H++D T G V+ A+T + ++ ++KK K YLA+T P + H+M+
Sbjct: 64 -HRLDRPTTGIVLFAKTSKALPRLNKLFKDKKANKTYLAITKGKPPKDKATLVHWMKR-- 120
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
P+ Y + EV E KK Y ++ + Y K+ L TGR H
Sbjct: 121 -NPK--QNKSYAHEKEVAESKKAIL-------HYELQKV----LNNYYLLKVDLETGRHH 166
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R+QL+A G PI GD Y
Sbjct: 167 QIRSQLSAIGCPIKGDLKY 185
>gi|146281243|ref|YP_001171396.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
A1501]
gi|145569448|gb|ABP78554.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
A1501]
Length = 294
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 19/204 (9%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 64 MRVHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 122
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318
L H+ID T G V+ + +E + RE+++ K Y A+ A LP G+
Sbjct: 123 -NADLVPIHRIDRLTAGLVLFSANRESRDAYQALFRERRIAKRYEAICPA-LP-GLEFPL 179
Query: 319 MRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
R + + P E ++L + D IE RD+ + + +
Sbjct: 180 RRQLCMVP---GEPFFLMREG----------DGEPNSETLIEVLE--RRDHLWRYALTPI 224
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGR HQ+R +A GA I D Y
Sbjct: 225 TGRKHQLRLHMATLGAGICNDPFY 248
>gi|359727331|ref|ZP_09266027.1| pseudouridylate synthase [Leptospira weilii str. 2006001855]
gi|417782254|ref|ZP_12429987.1| RNA pseudouridine synthase [Leptospira weilii str. 2006001853]
gi|410777847|gb|EKR62492.1| RNA pseudouridine synthase [Leptospira weilii str. 2006001853]
Length = 270
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+I N RI TES + +KP G V T D+ E+ A + L L LRT +++D
Sbjct: 3 EIYSNIRIFYETESFLFAEKPPGIPVHATKDSKRENFADTLQKQLSLEY-LRTVNRLDLD 61
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVS 330
T G V + + R + K K+YL +++ +P + T +++ N R V
Sbjct: 62 TSGLVFFCKNPDKNKEADRIL--KSSSKIYLCVSSGAIPEEHFLETCHIKDGNKKVRKVF 119
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G E + K+ P +V A KL TGR HQ+R L+
Sbjct: 120 SGGDKAVTEFLTLKRNPKEHYSVLLA-------------------KLHTGRRHQIRLHLS 160
Query: 391 ACGAPIVGDSMY 402
G PIVGD +Y
Sbjct: 161 EKGFPIVGDFVY 172
>gi|421856423|ref|ZP_16288789.1| pseudouridine synthase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|403188121|dbj|GAB74990.1| pseudouridine synthase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 303
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 189 VDQIVEAGTYLRVHVHPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+D I E H++ RF + + + I+ T+ +V+DKP ++ T ++E
Sbjct: 68 IDSIYEGNQ----HIYYYRFLSKETPVPFEHHILHETDEFLVVDKPHFLTMSPTGQYVQE 123
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+ + G+ T L H++D T G V+ ++ E ++ + E+KV+K Y A+
Sbjct: 124 TLLVRLKKQTGIET-LTPIHRLDRETAGVVLFSKRPETRGLYQKLFAERKVEKTYHAV-- 180
Query: 308 APLPVGIMTHYMRPINIAPRL-VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
AP + PIN+ RL E +Y Q+ E D +A+ W
Sbjct: 181 APFKPELNF----PINLTLRLDKGEPFYTMQIVEGESNTETLIDLLDVRAH------WAK 230
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
Y+ K + TG+ HQ+R L G PI DS Y
Sbjct: 231 ----YQLKPR--TGKQHQLRVHLNHLGIPIQNDSFY 260
>gi|254486362|ref|ZP_05099567.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
gi|214043231|gb|EEB83869.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
Length = 349
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 10/179 (5%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL-GLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ L+KP G V G + + A + L R H++D T G +++ART+
Sbjct: 101 IALNKPPGLPVQGGSGQSDRHVDALADALMFDLDEKPRLVHRLDKDTSGVLIMARTRSIA 160
Query: 287 SIFHRKIREKKVKKLY-LALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
+ R ++ +K+Y A+ P P + EG E M C
Sbjct: 161 ADLTSSFRHRQTRKIYWAAVAGVPHPKNGTIKFGLVKAFGHGARGEG------EKMYCVH 214
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMY 402
D T G + D ++ C + L+ TGRTHQ+RA +A G PIVGD Y
Sbjct: 215 PKDMDTTEGAKRATTDYATLAQAGTRTCWVALIPVTGRTHQLRAHMAEIGHPIVGDGKY 273
>gi|331269001|ref|YP_004395493.1| RluA family pseudouridine synthase [Clostridium botulinum
BKT015925]
gi|329125551|gb|AEB75496.1| pseudouridine synthase, RluA family [Clostridium botulinum
BKT015925]
Length = 323
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 36/256 (14%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCY-DIDWNS-RIIAVTESHVVLDKPAG 235
++A++ + + D I+E + K P+ + ++D++S +I E+ ++++K G
Sbjct: 44 KKAKQNYFLQEED-IIETKYIETYKQNKKNMPKKFQEVDFSSIKISYEDENMLIIEKWPG 102
Query: 236 TSVGGTTDNIEESCATFASRAL---GLTTPLRTT-------HQIDNCTEGCVVLARTQEY 285
V + E + + L G P + +++D T G V+ + +
Sbjct: 103 VLVHSDKKDGEPTLTDYVLSYLFQKGDYDPQKEVTFTPAPCNRLDRNTSGMVIFGKNFKT 162
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP--INIAPRLVSEGWYLCQLEVMEC 343
I + IRE+K+KK Y AL + G Y+ +N + E + ME
Sbjct: 163 LKILNAMIRERKIKKYYNALVKGKIKEGYYEAYISKDQVNNISEIHKEKKQNSKKIAMEV 222
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYM 403
+ TVG +E + LLTGR+HQ+RA LA G PI+GD Y
Sbjct: 223 NVID----TVGTFSFLE--------------LDLLTGRSHQLRAHLAYLGNPIIGDDKY- 263
Query: 404 PAAIAQLSSPGLNPFG 419
+L+S N +G
Sbjct: 264 --GDKKLNSFFNNKYG 277
>gi|365902493|ref|ZP_09440316.1| RluA family pseudouridine synthase [Lactobacillus malefermentans
KCTC 3548]
Length = 294
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-FASRALGLTTPLRTTH---QIDNCTEG 275
I+A T +V++K AG +V N E++ + + H ++D T G
Sbjct: 81 IVAETNHWLVVNKEAGLTVVPGPANREDTLVNRIKGHLMNENSAQLVPHIITRLDRFTSG 140
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V++A+ + S+F ++ ++KK Y+A+ + G M I+ R EG+
Sbjct: 141 LVLVAKHRYANSLFSEQLANHELKKTYIAIVS-----GNMEKAHDLIDKPIRRADEGF-- 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
++ PD GK+ E D K+ LLTGRTHQ+R A G P
Sbjct: 194 --------NQIVAPD---GKSAQTEYWVLGQNDDYSLVKVNLLTGRTHQIRVHFQAIGHP 242
Query: 396 IVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYASDDDKEMA 434
++GD +Y +S L +PF +++ +D +MA
Sbjct: 243 LLGDELYHGPLNLGISRQALHASELSFTDPFTGELQQFKADLPADMA 289
>gi|239815171|ref|YP_002944081.1| RluA family pseudouridine synthase [Variovorax paradoxus S110]
gi|239801748|gb|ACS18815.1| pseudouridine synthase, RluA family [Variovorax paradoxus S110]
Length = 327
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 31/254 (12%)
Query: 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VL 230
++G+T+ +A T R AG + + P + + + + + H+ ++
Sbjct: 61 LQGRTLLKASATVR---------AGQTGHIELRPTPQSQAFRPEPMDIVTVHEDEHLRII 111
Query: 231 DKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
DKPAG V G + + +A L H++D T G +V+ART+
Sbjct: 112 DKPAGLVVHPAPGHWSGTLLNGLLALDPKA-ALLPRAGIVHRLDRDTSGLMVVARTRAAM 170
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
I ++VK+ YLAL P PI PR ++ V++ ++
Sbjct: 171 DAMVALIAAREVKRQYLALGHKPWAGAAARQVDAPIGRDPR------NRLRMAVVDLER- 223
Query: 347 PWPDATVGKAYS--IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
GK IE ++ A C ++ TGRTHQ+R +A+ G P+VGD++Y
Sbjct: 224 -----HAGKTARTLIERLDSNAQACAVRCTLE--TGRTHQIRVHMASIGHPLVGDALYGG 276
Query: 405 AAIAQLSSPGLNPF 418
A A L L+ F
Sbjct: 277 APAAGLGRQALHAF 290
>gi|257464999|ref|ZP_05629370.1| RNA pseudouridine synthase [Actinobacillus minor 202]
gi|257450659|gb|EEV24702.1| RNA pseudouridine synthase [Actinobacillus minor 202]
Length = 212
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 41/185 (22%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP G SV DN ++ LG+ + H++D T G ++LA T+E
Sbjct: 15 IVIDKPEGISVH--KDNEATGLTERIAQQLGVPQ-VWLVHRLDKATSGLLILALTKEAAV 71
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE-------GWYLCQLEV 340
F+ ++ K++K Y AL+TA +P ++V + W LC
Sbjct: 72 EFYHLFKQHKIQKTYWALSTA-----------KPKKKQGKIVGDMKKSRNSAWKLC---- 116
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAPIV 397
K+ P + S+ A + + L TGRTHQ+R + + G+PI+
Sbjct: 117 -HTKETP------------AITQFTSQSVAPQLRWFTLNPHTGRTHQLRVAMKSLGSPIL 163
Query: 398 GDSMY 402
GDS+Y
Sbjct: 164 GDSLY 168
>gi|393759256|ref|ZP_10348072.1| ribosomal large subunit pseudouridine synthase D [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
gi|393162484|gb|EJC62542.1| ribosomal large subunit pseudouridine synthase D [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
Length = 321
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQI 269
D+D+ I+A ++S +V++KP G N + F AL H++
Sbjct: 91 DVDFE--IVAQSDSWLVVNKPVGLVTHPGAGNWRGTLLNGLLFRFPALRQVPRAGVVHRL 148
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIAPR 327
D T G +V+ART+ + F R+++E+ + + YLAL LP + R + + R
Sbjct: 149 DKDTSGLLVVARTEVAQTHFVRQLQERSMGRQYLALVHGVLPGQGSVEEPIGRDLRVPVR 208
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ S G + P P T Y + G+ + E +L TGRTHQ+R
Sbjct: 209 M-STGPSVA----------PKPAVT---HYQMLRQGYAGDEAVTEVACRLETGRTHQIRV 254
Query: 388 QLAACGAPIVGDSMYMPAAIA 408
L++ P++ D++Y A+A
Sbjct: 255 HLSSIKHPLLADTLYGGRAVA 275
>gi|334129805|ref|ZP_08503608.1| Ribosomal large subunit pseudouridine synthase C [Methyloversatilis
universalis FAM5]
gi|333444841|gb|EGK72784.1| Ribosomal large subunit pseudouridine synthase C [Methyloversatilis
universalis FAM5]
Length = 316
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E+ + ++KPAG +V G + + RA L H++D T G +++
Sbjct: 82 ILYEDEAFLAINKPAGIAVHGGS-GVSFGVIESLRRARPQARLLELAHRLDRETSGILLI 140
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + + H R+ + K Y AL + ++ P+ +++ YL E
Sbjct: 141 AKKRSALTALHDAFRDGAMDKRYFAL--------VKGRWLNPVQHIRLALTK--YLT--E 188
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
E + PD + + WP Y+ +++ TGRTHQ+R L+A G PI GD
Sbjct: 189 SGERRVSVDPDGKTAHSIVELEARWPG--YSL-LGVRIKTGRTHQIRVHLSASGFPIAGD 245
Query: 400 SMY 402
Y
Sbjct: 246 EKY 248
>gi|451818388|ref|YP_007454589.1| ribosomal large subunit pseudouridine synthase C [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784367|gb|AGF55335.1| ribosomal large subunit pseudouridine synthase C [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 323
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP---IN 323
+++D T G VV ++ E + IRE +VKK Y L + G+ Y+ N
Sbjct: 142 NRLDRNTAGMVVFGKSFEGLKCINEAIREDEVKKYYYTLAKGKIRDGLHEAYILKNPETN 201
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATV--GKAYSIEDCGWPSRDYAYECKIKLLTGR 381
I+ + + EV KK+ TV AYS+ D I L+TGR
Sbjct: 202 ISK--------IYETEVPGSKKIAMKITTVETNGAYSLID-------------INLITGR 240
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
+HQ+RA LA G PI+GD+ Y +L+S N +G
Sbjct: 241 SHQIRAHLAHLGNPIIGDNKY---GDKKLNSFFENKYG 275
>gi|399991417|ref|YP_006571657.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398655972|gb|AFO89938.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 343
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 19/191 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I ++ +VL+KPAG +V G + + A+ R H++D T G +VL
Sbjct: 89 VIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAALQFDAEEKPRLVHRLDKDTSGVLVL 148
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SE 331
ART+ R + +K+Y AL G+ T Y+ I LV E
Sbjct: 149 ARTRLAAQSLTAAFRHRATRKIYWALV-----AGVPTPYLGEIKCG--LVKAPGHGKSGE 201
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G + + E P ++++ + A ++ +TGRTHQ+RA +A
Sbjct: 202 GEKMIAIHSNEVDSTP----GAKRSHTHYATLYRVASRAAWVAMEPITGRTHQLRAHMAE 257
Query: 392 CGAPIVGDSMY 402
G PI GD Y
Sbjct: 258 IGHPIAGDGKY 268
>gi|262198126|ref|YP_003269335.1| pseudouridine synthase [Haliangium ochraceum DSM 14365]
gi|262081473|gb|ACY17442.1| pseudouridine synthase, RluA family [Haliangium ochraceum DSM
14365]
Length = 369
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLT---TPLRTTHQIDNCTEGCVVLARTQE 284
+V+DKPAG V + + +R LG P++ H++D T G +V+AR +
Sbjct: 118 LVIDKPAGLPVHASARFYFNTL----TRVLGERFPGQPMQICHRLDRETSGALVVARGKP 173
Query: 285 YCSIFHRKIREKKVKKLYLALT--TAPLPVGIMTHYMRP---INIAPRLVSEGWYLCQLE 339
+ +K+ K YLAL P P G I++ LV++ ++
Sbjct: 174 EAARLKGAFADKRAHKTYLALVWGDPPWPDGAWDSAPEDDAIIDLPLGLVADESARIKIR 233
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
ME + P T + R A + LTGR HQ+RA LAACG PIVGD
Sbjct: 234 -MEVRAGALPSLTRVRVLE-------RRGRAALVRCLPLTGRQHQIRAHLAACGHPIVGD 285
Query: 400 SMY 402
+Y
Sbjct: 286 KLY 288
>gi|400755741|ref|YP_006564109.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
gi|398654894|gb|AFO88864.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
Length = 348
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 19/191 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I ++ +VL+KPAG +V G + + A+ R H++D T G +VL
Sbjct: 94 VIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAALQFDAEEKPRLVHRLDKDTSGVLVL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SE 331
ART+ R + +K+Y AL G+ T Y+ I LV E
Sbjct: 154 ARTRLAAQSLTAAFRHRATRKIYWALV-----AGVPTPYLGEIKCG--LVKAPGHGKSGE 206
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G + + E P ++++ + A ++ +TGRTHQ+RA +A
Sbjct: 207 GEKMIAIHSNEVDSTP----GAKRSHTHYATLYRVASRAAWVAMEPITGRTHQLRAHMAE 262
Query: 392 CGAPIVGDSMY 402
G PI GD Y
Sbjct: 263 IGHPIAGDGKY 273
>gi|416891724|ref|ZP_11923271.1| RluA protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347815272|gb|EGY31912.1| RluA protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 238
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV D+ + ++ LG+ + H++D T G ++LA ++
Sbjct: 13 IVINKPNGISV--HKDDADVGLTRLVAQQLGVPQ-VWLVHRLDKVTSGLLILALNEKAAV 69
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
RK E +++K YLAL+T P + A R W LCQ K+ P
Sbjct: 70 TLSRKFAEHQIQKTYLALSTQK-PKKKQGRISGDMQKARR---GAWKLCQ-----SKENP 120
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAPIVGDSMY 402
+I D + S A ++ +L TG+THQ+R + + G+PI+GD +Y
Sbjct: 121 ----------AITD--FVSHSLAPNLRLFILYPKTGKTHQIRVAMKSLGSPILGDELY 166
>gi|319794365|ref|YP_004156005.1| RluA family pseudouridine synthase [Variovorax paradoxus EPS]
gi|315596828|gb|ADU37894.1| pseudouridine synthase, RluA family [Variovorax paradoxus EPS]
Length = 322
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 27/252 (10%)
Query: 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VL 230
+G+T+ +A T R AG R+ + P + + + + + H+ ++
Sbjct: 56 FQGRTLTKASATVR---------AGQAGRIELRPTPQSQAFRPEPMDLVTVFEDEHLRIV 106
Query: 231 DKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
DKPAG V G + + +A+ L H++D T G +V+ART+
Sbjct: 107 DKPAGLVVHPAPGHWSGTLLNGLLALDPKAV-LLPRAGIVHRLDRDTSGLMVVARTRAAM 165
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
I ++VK+ YLA+ P PI PR ++ V++ ++
Sbjct: 166 DALVALIAAREVKRQYLAIGHKPWVGAAARQVDAPIGRDPR------NRLRMAVVDLERH 219
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
A IE S C ++ TGRTHQ+R +A+ G P+VGD++Y A
Sbjct: 220 SGKTART----LIERLDSHSEGCVVRCTLE--TGRTHQIRVHMASIGHPLVGDALYGGAP 273
Query: 407 IAQLSSPGLNPF 418
L+ L+ F
Sbjct: 274 AVGLARQALHAF 285
>gi|158334165|ref|YP_001515337.1| RluA family pseudouridine synthase [Acaryochloris marina MBIC11017]
gi|158304406|gb|ABW26023.1| pseudouridine synthase, RluA family [Acaryochloris marina
MBIC11017]
Length = 306
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 190 DQIVEAGTYLRVHVHPKR---FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
D +++ G L H P + P +D+ + + + + KP+G V +E
Sbjct: 55 DTVLKQGQNLAYHRPPWQEPTVPLTFDVLYEDADV------LAIHKPSGLQVLPGGGFLE 108
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL- 305
+ + TP H++ T G V++AR+Q+ + +++R ++++K+Y AL
Sbjct: 109 HTLLHQVQQRFPQGTPF-PIHRLGRGTSGVVLMARSQQARAALSQQMRNRQIQKVYRALI 167
Query: 306 ----TTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC-KKVPWPDATVGKAYSIE 360
TT PL Q E+ + KVP+P+ +G Y+
Sbjct: 168 GPEQTTHPLEE------------------------QFEITQAIGKVPYPE--LGYIYAAT 201
Query: 361 DCGWPS---------RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQ 409
G P+ R A + + TGR HQ+R LA G P++GD +Y+ Q
Sbjct: 202 PKGRPAHSACTILQRRPEATLLAVTITTGRPHQIRIHLATIGYPLLGDPLYVAGGQPQ 259
>gi|383642663|ref|ZP_09955069.1| RluA family pseudouridine synthase [Sphingomonas elodea ATCC 31461]
Length = 367
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S +I S +VL+KP G + G T E + + H++D T G
Sbjct: 97 QSMVIHRDASAIVLNKPPGLATQGGTKTFEHVDGLLDALQFEAEGRPKLVHRLDKDTSGA 156
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR-PINIAPRLVSEGWYL 335
+++AR+ + F + + +K+Y AL +P I ++ PI P G
Sbjct: 157 LLIARSARAAAYFAKSFSGRTARKIYWALVMG-VP-DIEDGFIELPIGKQP---GTGGEK 211
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
Q+++ E + +A + C W +++ TGRTHQ+R +AA G P
Sbjct: 212 MQVDMEEGSPARTRYRVIEQAGN--RCAW--------VELQPFTGRTHQLRVHMAAIGHP 261
Query: 396 IVGDSMY 402
IVGD Y
Sbjct: 262 IVGDGKY 268
>gi|344199259|ref|YP_004783585.1| RluA family pseudouridine synthase [Acidithiobacillus ferrivorans
SS3]
gi|343774703|gb|AEM47259.1| pseudouridine synthase, RluA family [Acidithiobacillus ferrivorans
SS3]
Length = 317
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VLDKP+G +V G + I E+ A L H++D T GC++L++ +
Sbjct: 100 LVLDKPSGLAVHGGSGLSWGIIEALRQLRPDA----RELELVHRLDRDTSGCLILSKKRS 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR--LVSEGWYLCQLEVME 342
H +RE ++K YLAL G R + +A R + G + +++ +E
Sbjct: 156 ALRALHEALREGLMEKRYLALAA-----GDWQGKARAVRLALRKNTLQSGERMVRVDPVE 210
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K A + +E +P+ A + L TGRTHQ+R L A G + GD Y
Sbjct: 211 GK------AAHTRFLPLEH--FPA---AVLLQADLDTGRTHQIRVHLQAIGHSVAGDEKY 259
Query: 403 MPAAIAQ-LSSPGLN 416
A Q L + GL
Sbjct: 260 GDAVFNQRLRTMGLR 274
>gi|456875082|gb|EMF90316.1| RNA pseudouridine synthase [Leptospira santarosai str. ST188]
Length = 254
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI ES++ +KP G V T D+ E+ A + L L LRT +++D T G
Sbjct: 6 LNIRIFYENESYIFAEKPPGIPVHATKDSKRENFADILQKQLSLDY-LRTVNRLDLETSG 64
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGW 333
V + + R + K K+YL + + +P + T Y++ N R V G
Sbjct: 65 LVFFCKNPDKNKEADRIL--KTSVKIYLCVVSGTIPEEHFLETCYIKDGNKKVRKVFSGG 122
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E + K+ P +V A KL TGR HQ+R L+ G
Sbjct: 123 DKAVTEFLTLKQNPKERYSVLLA-------------------KLHTGRRHQIRLHLSEKG 163
Query: 394 APIVGDSMY 402
PI+GD +Y
Sbjct: 164 FPILGDRVY 172
>gi|422002202|ref|ZP_16349440.1| pseudouridylate synthase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|417259134|gb|EKT88513.1| pseudouridylate synthase [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 254
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI ES++ +KP G V T D+ E+ A + L L LRT +++D T G
Sbjct: 6 LNIRIFYENESYIFAEKPPGIPVHATKDSKRENFADILQKQLSLDY-LRTVNRLDLETSG 64
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGW 333
V + + R + K K+YL + + +P + T Y++ N R V G
Sbjct: 65 LVFFCKNPDKNKEADRIL--KTSVKIYLCVVSGTIPEEHFLETCYIKDGNKKVRKVFSGG 122
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E + K+ P +V A KL TGR HQ+R L+ G
Sbjct: 123 DKAVTEFLTLKQNPKERYSVLLA-------------------KLHTGRRHQIRLHLSEKG 163
Query: 394 APIVGDSMY 402
PI+GD +Y
Sbjct: 164 FPILGDRVY 172
>gi|392390653|ref|YP_006427256.1| 23S RNA-specific pseudouridylate synthase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521731|gb|AFL97462.1| 23S RNA-specific pseudouridylate synthase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 229
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 32/150 (21%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP----VGIMTHY 318
L H++D T G +V A+T + S + K + +KV K Y AL T P G +THY
Sbjct: 56 LGLIHRLDRVTSGAIVYAKTSKALSRMNEKFKSRKVDKTYWALCTPLAPNQPTEGTLTHY 115
Query: 319 MRP------INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+R + + PR ++G L KK+ D +
Sbjct: 116 LRKNSKNNTVTVFPR-PTDGAKKAVLHYKLIKKL---------------------DRYWL 153
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+I+L TGR+HQ+RAQ+A GA I GD Y
Sbjct: 154 FEIELETGRSHQIRAQMAKIGAIIKGDLKY 183
>gi|269798694|ref|YP_003312594.1| pseudouridine synthase [Veillonella parvula DSM 2008]
gi|269095323|gb|ACZ25314.1| pseudouridine synthase, RluA family [Veillonella parvula DSM 2008]
Length = 288
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 113/269 (42%), Gaps = 49/269 (18%)
Query: 151 PEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR 210
P ++ V K V + LS R + + R+ H + ++ G L + + P+
Sbjct: 11 PTELTVSKYVKERFSLSSRDIQMMFRKKRVKVNSRVAHSQRALKKGDVLTLEL-PQDKDY 69
Query: 211 CYDID--------WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
D++ ++ + V + +L PAG + T N A + ++ +
Sbjct: 70 GVDVEKGPITVLYEDAHTLVVNKDPFMLVHPAGQTKSCTLSNY---VAGYYAKK-NVVHK 125
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R H++D T GC++ +T+E + +++ ++ ++Y L + M PI
Sbjct: 126 VRPVHRLDRDTSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGRIDANGMVD--API 183
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR------DYAYE---C 373
+ P V + ++V I++ G P++ D+ +
Sbjct: 184 GVDP-------------VFDNRRV------------IDELGQPAQTEYIVLDHEGDNTLL 218
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ KLLTGRTHQ+R + G PIVGD+MY
Sbjct: 219 RFKLLTGRTHQIRVHMEHIGHPIVGDAMY 247
>gi|423475275|ref|ZP_17451990.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
gi|402436377|gb|EJV68408.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
Length = 307
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 51/247 (20%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGITVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKVKGKQGTIDAAIGRDRHHATRRRVSPK-------- 206
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + Y +E + + A ++L TGRTHQ+R ++ G P
Sbjct: 207 -------------GDQAI-TYYKVEK--YFKKQNATFVTLQLETGRTHQIRVHMSYHGNP 250
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 251 LVGDVLY 257
>gi|326383527|ref|ZP_08205213.1| pseudouridine synthase [Gordonia neofelifaecis NRRL B-59395]
gi|326197611|gb|EGD54799.1| pseudouridine synthase [Gordonia neofelifaecis NRRL B-59395]
Length = 291
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P+ FP +D+ I+ + + V+DKP + ++ E+ R LG + +
Sbjct: 68 PEEFPVPFDMP----ILHLDDDLAVVDKPHFLATMPRGAHVAETALVRLRRELG-SDEVA 122
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G ++ R +E + + +++V K Y AL A + + I
Sbjct: 123 PAHRLDRLTAGVLLFTRRREVRAAYQELFAQRRVHKEYRALARAD------DALVERVRI 176
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRT 382
R+V L + VP G+ ++ D R + +LL TGRT
Sbjct: 177 ENRIVKTAGDL------RARVVP------GEVNAVSDIELAVRHGEGLAEYRLLPSTGRT 224
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R +A G PI+GD +Y
Sbjct: 225 HQLRMHMAGLGTPIIGDPLY 244
>gi|297182825|gb|ADI18977.1| pseudouridylate synthases, 23S RNA-specific [uncultured delta
proteobacterium HF0010_10I05]
Length = 316
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L T H++D T G V+ A+T + R+K+++K Y A+ T PLP +
Sbjct: 126 LYTIHRLDRETSGVVLFAKTHQMAQQMAALFRDKQIRKEYRAVVTTPLP---KEEILVSK 182
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
I P S +++ C+ + + +I +C + +I +TGRT
Sbjct: 183 PIGPDRSSS----IRIKQSVCEDGKPSETRFRQLKTIRECAY--------LQIHPMTGRT 230
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R AA G PIVGD +Y
Sbjct: 231 HQIRIHAAASGFPIVGDKLY 250
>gi|427430618|ref|ZP_18920380.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425878587|gb|EKV27301.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 235
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 31/222 (13%)
Query: 228 VVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+VL+KPAG V GG DN+E GL H++D T GC++L R
Sbjct: 18 LVLNKPAGLPVHAGPKGG--DNLEMFLDPLR---FGLPRLPSLAHRLDRDTSGCLILGRH 72
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ + ++ +V+K Y A+ P G++ +R + P+ GW + E
Sbjct: 73 SKALRKLGKLFQQGRVEKTYWAVVDGAPPKEQGVLHAKLR--KLTPK---SGWKMVVDEA 127
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
P T + D G R ECK K TGRTHQ+R A G PIVGD+
Sbjct: 128 EG-----QPAVTEYRVLGRSDDG---RRTWLECKPK--TGRTHQIRVHCAHLGCPIVGDA 177
Query: 401 MYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQH 442
+Y +A L L+ G Y S D+ +AV + +H
Sbjct: 178 VYGTPGVAPLH---LHARGVAVPLYPSRDE-PIAVEAPVPEH 215
>gi|384227779|ref|YP_005619524.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ak (Acyrthosiphon kondoi)]
gi|345538719|gb|AEO08696.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ak (Acyrthosiphon kondoi)]
Length = 314
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP+G +V G + + + + L L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGS-GLSFGIIEYFRKLRPLDKFLELVHRIDRETSGVLILAKKRTSLI 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
H ++REKK+KK Y+AL H + PI+I +SE +L+ +
Sbjct: 161 SLHTQLREKKIKKEYIAL----------VHGLWPIHIKK--ISEPLLKIRLKNKQ----- 203
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIK-----LL-----TGRTHQVRAQLAACGAPIV 397
K I+ G PS + ++ K K LL TGRTHQ+R G PI+
Sbjct: 204 -------KIVLIDQKGKPSETH-FQIKKKFSSSTLLSIVPKTGRTHQIRVHTLHAGHPIL 255
Query: 398 GDSMY 402
D Y
Sbjct: 256 FDKRY 260
>gi|170078760|ref|YP_001735398.1| putative pseudouridine synthase [Synechococcus sp. PCC 7002]
gi|169886429|gb|ACB00143.1| putative pseudouridine synthase [Synechococcus sp. PCC 7002]
Length = 282
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
D+ N +I+ ++DKPAG V + +E + R TP+ H++
Sbjct: 55 DVPLNFQILHQDPHFWIIDKPAGLPVLPAGNFLENTLLAQLKRQFPDETPV-PIHRLGRG 113
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G ++L R+ R++RE ++ K+Y A+ A G
Sbjct: 114 TSGLMILGRSPLGRQSLTRQLREHQITKIYRAVIPA-----------------------G 150
Query: 333 WYLCQLEVME-CKKVPWPDATVGKAYSIEDCGWPSRDYAYE-------CKIKLLTGRTHQ 384
Y Q+ + K+ P A + + S E ++++ TGR HQ
Sbjct: 151 DYPDQITITTPIGKIFHPSLGTIFAATADGLSAHSEMRVLERLAKVSRVEVQIFTGRPHQ 210
Query: 385 VRAQLAACGAPIVGDSMYMPAAI 407
+R +AA G P+VGD +Y+P +
Sbjct: 211 IRIHMAAMGFPLVGDRLYLPGGL 233
>gi|386019428|ref|YP_005937452.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
DSM 4166]
gi|327479400|gb|AEA82710.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
DSM 4166]
Length = 274
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 19/204 (9%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 44 MRVHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 102
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318
L H+ID T G V+ + +E + RE+++ K Y A+ A LP G+
Sbjct: 103 -NADLVPIHRIDRLTAGLVLFSANRESRDAYQALFRERRIAKRYEAICPA-LP-GLEFPL 159
Query: 319 MRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
R + + P E ++L + E P + + RD+ + + +
Sbjct: 160 RRQLCMVP---GEPFFLMR----EGDGEPNSETLIEV--------LERRDHLWRYALTPI 204
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGR HQ+R +A GA I D Y
Sbjct: 205 TGRKHQLRLHMATLGAGICNDPFY 228
>gi|229057021|ref|ZP_04196415.1| Pseudouridine synthase [Bacillus cereus AH603]
gi|228720298|gb|EEL71874.1| Pseudouridine synthase [Bacillus cereus AH603]
Length = 307
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 51/247 (20%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYL 335
+I R + E+K+K+ Y+AL A + +G H+ ++P+
Sbjct: 155 AGAIMDRLLMERKIKRTYMALVEAKVKKKQGTIDAAIGRDRHHATRRRVSPK-------- 206
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + Y +E + + A ++L TGRTHQ+R ++ G P
Sbjct: 207 -------------GDQAI-TYYKVEK--YFKKQNATLVTLQLETGRTHQIRVHMSYNGNP 250
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 251 LVGDVLY 257
>gi|195146688|ref|XP_002014316.1| GL19135 [Drosophila persimilis]
gi|194106269|gb|EDW28312.1| GL19135 [Drosophila persimilis]
Length = 478
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + E VV++KPA V + +++ L LRT H++D T G ++
Sbjct: 155 IVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKSHNLKN-LRTIHRLDRLTSGLLIF 213
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL- 338
RT + ++IR ++V+K Y+ P GI+ N ++VS +C++
Sbjct: 214 GRTSKKARELEQQIRNRQVQKEYICRVEGRFPDGIIE-----CNEPIQVVSYKIGVCRVS 268
Query: 339 -EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+C+ T + + DC K LTGR HQ+R L G PIV
Sbjct: 269 PNGKDCR------TTFRRISEVGDCSI--------VLCKPLTGRMHQIRVHLQYLGYPIV 314
Query: 398 GDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWIS 440
D +Y G + GK + ++ K W+
Sbjct: 315 NDPLYNHEVFGPSKGRGGDIGGKSDDQLINNLIKIHNAENWLG 357
>gi|237836503|ref|XP_002367549.1| RNA pseudouridylate synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|211965213|gb|EEB00409.1| RNA pseudouridylate synthase domain-containing protein [Toxoplasma
gondii ME49]
Length = 2257
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A++ + ++ + KK+YLAL +P+ + P+
Sbjct: 2023 HRLDTPTSGPLLVAKSYAGLAFLRAQLASWRPKKVYLALVFGAVPLREKVRLVHPL---- 2078
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R E + E+ V DA + ++ I + RD+ C+++ +TGRTHQ
Sbjct: 2079 RPTFEAGKTGKKEMEVANTV---DAKIALSFLSGITHYSYGGRDFTL-CRVEPVTGRTHQ 2134
Query: 385 VRAQLAACGAPIVGDSMYM 403
+RAQLA G PIV D +Y+
Sbjct: 2135 IRAQLAHIGHPIVADPIYV 2153
>gi|323138142|ref|ZP_08073215.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
gi|322396604|gb|EFX99132.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
Length = 351
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KP G + G + S A G + P+ H++D T G +++A+T+ +
Sbjct: 106 LVLNKPWGLATQGGSGQKRHVDGMLESLARGDSRPV-LVHRLDRDTSGVLLVAKTRRMAA 164
Query: 288 IFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R ++ KK+Y AL P P G ++ Y+ + G LE M K
Sbjct: 165 DLGEIFRSRQAKKIYWALVEGVPKPAQGRVSLYLAKGAGMEKARGGG---RDLEKMRVAK 221
Query: 346 VPWPDATVGKAY-SIED-----CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
DA Y +I D C W S +K LTGRTHQ+RA A G PI GD
Sbjct: 222 HGEADAQHSLTYYAIVDKVAPRCAWLS--------MKPLTGRTHQLRAHAEAIGHPIFGD 273
Query: 400 SMY 402
Y
Sbjct: 274 PKY 276
>gi|332668407|ref|YP_004451195.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
gi|332337221|gb|AEE54322.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
Length = 243
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 30/228 (13%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II V E +V +KP+G + D ++ + H+ID T G +V
Sbjct: 7 KIIHVDEHIIVCEKPSG--LLSIPDRFDQEKPNLYHLLEAQYGQVWIVHRIDRETSGILV 64
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA-PL-PVGIMTHYMRPI-NIAPRLVSEGWYL 335
AR ++ +++ ++ V+K+YLAL P+ P G + + P +IA ++++ G
Sbjct: 65 FARNEDAHRALNQQFLDRSVEKIYLALVEGRPMPPTGEINKAIAPHPSIAGKMITSGKGK 124
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
L + + KAY++ E IK TGRTHQ+R A+ G P
Sbjct: 125 SALTLYKV-------VDTYKAYAL-----------VEADIK--TGRTHQIRVHFASIGHP 164
Query: 396 IVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG 443
+ D +Y A LS + F D D+E A++ ++ H
Sbjct: 165 LAVDPVYGKRAAFFLSEIKTHRFN-----LKKDQDEEQALVSRLTLHA 207
>gi|307718151|ref|YP_003873683.1| ribosomal large subunit pseudouridine synthase C [Spirochaeta
thermophila DSM 6192]
gi|306531876|gb|ADN01410.1| ribosomal large subunit pseudouridine synthase C [Spirochaeta
thermophila DSM 6192]
Length = 300
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 87/214 (40%), Gaps = 38/214 (17%)
Query: 200 RVHVH----PKRFPRCYDIDWNSR---IIAVTESHVVLDKPAGTSV---GGTTDNIEESC 249
R+H+H P+R PR W R I+ T+ ++L+KP G V G TD +
Sbjct: 61 RIHIHRSLLPEREPRQ---KWEPRALPILLETDHLLILNKPPGAVVHGPGSLTDQVRSYL 117
Query: 250 ATFASRALGLT-TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+L T +PL H++D T G +V +R+ F R +RE ++K YLAL
Sbjct: 118 KDRIPPSLAFTPSPL---HRLDRLTSGILVFSRSIHGARWFTRALREGGIEKTYLALLEG 174
Query: 309 PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRD 368
L P L EG + P P P+
Sbjct: 175 TL--------AEPARWEDLLTREG----------RRSRPSPHGRPALTDVRPLLAAPTAT 216
Query: 369 YAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
A C I TGR HQ+R Q A G P++GD+ Y
Sbjct: 217 LAL-CIIH--TGRMHQIRVQAALRGHPLLGDTAY 247
>gi|383457505|ref|YP_005371494.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
gi|380734169|gb|AFE10171.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
Length = 313
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 101/261 (38%), Gaps = 71/261 (27%)
Query: 166 LSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR--CYDIDWNSRIIAV 223
+ R + KG TV E QK V V + PR D D+ ++
Sbjct: 46 VDGRPAKKGLTVTEGQK------------------VSVTVEEAPREAVPDTDFPLVVLHE 87
Query: 224 TESHVVLDKPAGT-------SVGGTTDNI------EESCATFASRALGLTTPLRTTHQID 270
S + +DKPAG GT N E + A+ R GL H++D
Sbjct: 88 DPSLLFVDKPAGRPSHPLQPGETGTVANALVARYPEVAQASQDPREGGLC------HRLD 141
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G + +ART+E + + V K Y+AL T PL
Sbjct: 142 VETSGVLAVARTREAWTRVREAFSNRAVDKRYVALVTGPL------------------AD 183
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWP---------SRDYAYECKIKLLTGR 381
EG ++EV PD Y ED S DY+ ++K+LTG
Sbjct: 184 EG----EVEVPLRHHPRHPDRVEPAPYGAEDAREALSHFRVLARSGDYSL-VEVKILTGV 238
Query: 382 THQVRAQLAACGAPIVGDSMY 402
HQVRA LA GAP+VGD++Y
Sbjct: 239 LHQVRAHLAGVGAPLVGDALY 259
>gi|392382035|ref|YP_005031232.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
gi|356877000|emb|CCC97801.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
Length = 339
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 38/187 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ L+KPAG +V G T+ + A + + H++D T G ++LAR S
Sbjct: 112 IALNKPAGLAVQGGTNTTKHLDAMLDALRFDAKERPKLVHRLDKDTSGVLLLARNTFAAS 171
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ R + V+K+Y A T VG+ Y I++A L EG + ++V
Sbjct: 172 KLTEQFRGRDVRKIYWAAT-----VGVPKPYQGKIDLA--LAKEGG-------PQGERVA 217
Query: 348 WPDATVGKAYS----IEDCG--------WPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ +A + +E+ G WP TGRTHQ+R + A G P
Sbjct: 218 GDEDDGKRAVTYYTVLENLGKQAAFVAMWPR------------TGRTHQLRVHMNAIGTP 265
Query: 396 IVGDSMY 402
I+GD Y
Sbjct: 266 ILGDGKY 272
>gi|381168928|ref|ZP_09878109.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380681944|emb|CCG42929.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 231
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 31/202 (15%)
Query: 218 SRIIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+R++ + +VLDKPAG +V GTTD++E G + R H++D T
Sbjct: 8 ARVLYRDQDVIVLDKPAGLAVHAGPGTTDHLELYLDPLR---FGWSQNPRLAHRLDRDTS 64
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL-VSE-- 331
GC++L R + R +++K+Y ++ P R AP L VSE
Sbjct: 65 GCLILGRHDKALKRLGRMFETHRIEKVYWSVCIGAPP------QARGRVEAPLLKVSEPG 118
Query: 332 -GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
GW + + W +G+A + W R TGRTHQ+RA A
Sbjct: 119 KGWRVRVDPAGQRAVTDW--VVLGQADGLCWVEWRPR-----------TGRTHQIRAHAA 165
Query: 391 ACGAPIVGDSMYM--PAAIAQL 410
G P++GD+++ PA +A L
Sbjct: 166 HLGCPLLGDAVHGGDPAPVAPL 187
>gi|118476866|ref|YP_894017.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|196046511|ref|ZP_03113736.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|225863254|ref|YP_002748632.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|229183584|ref|ZP_04310807.1| Pseudouridine synthase [Bacillus cereus BGSC 6E1]
gi|376265233|ref|YP_005117945.1| putative ribosomal large subunit pseudouridine synthase [Bacillus
cereus F837/76]
gi|118416091|gb|ABK84510.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|196022695|gb|EDX61377.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|225789436|gb|ACO29653.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228599827|gb|EEK57424.1| Pseudouridine synthase [Bacillus cereus BGSC 6E1]
gi|364511033|gb|AEW54432.1| putative ribosomal large subunit pseudouridine synthase [Bacillus
cereus F837/76]
Length = 307
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATKRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E+ + + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVEE--YFKKQNVTLVTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|221505297|gb|EEE30951.1| RNA pseudouridylate synthase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 2273
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A++ + ++ + KK+YLAL +P+ + P+
Sbjct: 2039 HRLDTPTSGPLLVAKSYAGLAFLRAQLASWRPKKVYLALVFGAVPLREKVRLVHPL---- 2094
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R E + E+ V DA + ++ I + RD+ C+++ +TGRTHQ
Sbjct: 2095 RPTFEAGKTGKKEMEVANTV---DAKIALSFLSGITHYSYGGRDFTL-CRVEPVTGRTHQ 2150
Query: 385 VRAQLAACGAPIVGDSMYM 403
+RAQLA G PIV D +Y+
Sbjct: 2151 IRAQLAHIGHPIVADPIYV 2169
>gi|209483640|gb|ACI47296.1| pseudouridine synthase 1 [Toxoplasma gondii]
Length = 2117
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A++ + ++ + KK+YLAL +P+ + P+
Sbjct: 1883 HRLDTPTSGPLLVAKSYAGLAFLRAQLASWRPKKVYLALVFGAVPLREKVRLVHPL---- 1938
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R E + E+ V DA + ++ I + RD+ C+++ +TGRTHQ
Sbjct: 1939 RPTFEAGKTGKKEMEVANTV---DAKIALSFLSGITHYSYGGRDFTL-CRVEPVTGRTHQ 1994
Query: 385 VRAQLAACGAPIVGDSMYM 403
+RAQLA G PIV D +Y+
Sbjct: 1995 IRAQLAHIGHPIVADPIYV 2013
>gi|399024546|ref|ZP_10726582.1| 23S RNA-specific pseudouridylate synthase [Chryseobacterium sp.
CF314]
gi|398080332|gb|EJL71149.1| 23S RNA-specific pseudouridylate synthase [Chryseobacterium sp.
CF314]
Length = 225
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTT---DNIEESCATFASRALGL--TTPLRTTHQIDNCTE 274
I ++H+ V++K G V G +++ ES F + G L H+ID T
Sbjct: 5 IVYEDNHLLVINKKVGQLVQGDKTGDESLLESIKKFIKKRDGKPGNVFLGLVHRIDRPTS 64
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
G V+ A+T + S + ++ +++KK Y A+ + P+ + Y
Sbjct: 65 GLVIYAKTSKALSRLTQMVKNREIKKTYWAVVAKEM--------------IPQTLRLIHY 110
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCG-WPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
L + E K + +P AT G +I S D +I L TGR HQ+RAQL+ G
Sbjct: 111 LKKNE-KNNKAIVYPKATEGAKEAILTYNVIKSLDNYLLLEIDLETGRHHQIRAQLSKTG 169
Query: 394 APIVGDSMYMPAAIAQLSSPGLNPFG 419
PI GD Y +P NP G
Sbjct: 170 IPIKGDLKY--------GAPRSNPDG 187
>gi|144897601|emb|CAM74465.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 230
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 22/202 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +++DKPAG +V G D GL H++D T GC
Sbjct: 8 ARVLYRDAMVLIIDKPAGLAVHAGARDGSHHLMDLLEPLRFGLPRNPELAHRLDRDTSGC 67
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIAPRLVSEGWY 334
+VL R ++ + + +K Y A+ P GI+ ++ + GW
Sbjct: 68 LVLGRHRKALARLGEIFAGSEAQKTYWAVVVGKPPAESGIIDKRLKKLE-----RRHGWR 122
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ V++ K DA Y + G R E K + TGRTHQ+R LAA G
Sbjct: 123 M----VVDDKG---QDAVT--EYRV--LGGNGRLSWIEAKPR--TGRTHQIRVHLAAIGC 169
Query: 395 PIVGDSMYMPAAIAQLSSPGLN 416
PIVGDS Y A L SP L+
Sbjct: 170 PIVGDSTY-GRGTADLVSPHLH 190
>gi|298530696|ref|ZP_07018098.1| pseudouridine synthase [Desulfonatronospira thiodismutans ASO3-1]
gi|298510070|gb|EFI33974.1| pseudouridine synthase [Desulfonatronospira thiodismutans ASO3-1]
Length = 318
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 89/216 (41%), Gaps = 31/216 (14%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNS---RIIAVTESHVVLDKPAGTSV-GGTTDNIEES 248
V AG +R+ P FP D + +I+ VLDKPAG V GT+ +
Sbjct: 62 VYAGDTVRI---PPHFPETGDDPQRAGELQIVFENPDFTVLDKPAGVPVHSGTSARRDNM 118
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G H++D T G ++ A+ + + V+K YLA
Sbjct: 119 VLRLRKHYAGADFSPALVHRLDKETSGLLLAAKNYAWLRRIQAMWNKNLVEKTYLAWVHG 178
Query: 309 PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDA--TVGKAYSIEDCGWPS 366
P R +N+ RL+ E M+ P P+ + + SI S
Sbjct: 179 SWPS-------RWVNLEHRLIKT------FEKMQ----PSPEGRPALSRVRSIAS----S 217
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
RD +I+++TGRTHQ+R QL+ G P++GD Y
Sbjct: 218 RDKTL-VQIRIITGRTHQIRTQLSLSGHPVIGDGKY 252
>gi|350564123|ref|ZP_08932942.1| pseudouridine synthase Rlu family protein, TIGR01621
[Thioalkalimicrobium aerophilum AL3]
gi|349778123|gb|EGZ32482.1| pseudouridine synthase Rlu family protein, TIGR01621
[Thioalkalimicrobium aerophilum AL3]
Length = 223
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 33/200 (16%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + VVLDKP G S + A R L T L H++D T G V++
Sbjct: 5 VVFESNEFVVLDKPDGLSFHSEQ---QPGLVVLAERQLNQT--LYPVHRLDKMTSGLVIM 59
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+T + F + ++ ++K YLA++T +P +GW + +
Sbjct: 60 AKTDQVARQFQQMFEQRLIEKYYLAISTH-----------KPKK------KQGW--VKGD 100
Query: 340 VMECKKVPWPDATVGK-----AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
++ ++ W +VG I P + +K TG+THQ+R L + GA
Sbjct: 101 MVASRRGSW-RLSVGMMNPAITQFISLASQPGERF---FLVKPHTGKTHQIRVALKSLGA 156
Query: 395 PIVGDSMYMPAAIAQLSSPG 414
PI GD Y A A G
Sbjct: 157 PIAGDIRYQLVADAMQEERG 176
>gi|312084667|ref|XP_003144368.1| hypothetical protein LOAG_08790 [Loa loa]
gi|307760466|gb|EFO19700.1| hypothetical protein LOAG_08790 [Loa loa]
Length = 379
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 108/271 (39%), Gaps = 26/271 (9%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
++T+V+ IV+ + H P +D R+I + +V+DKPA V
Sbjct: 43 QMTNVNYIVQHNDSIEHIGHRHEHPI---LDHYIRVIDNDNNIIVVDKPASMPVHPCGRY 99
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV-KKLYL 303
+ GL LR H++D T G ++ AR E + + +R +V K YL
Sbjct: 100 CVHTVLGMLREQRGLRD-LRVVHRLDRTTSGVLLFARNSETDTKLKKMLRVGEVWHKEYL 158
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP-WPDATVGKAYSIEDC 362
P RPI P ++S G C + +C + W T G+ SI C
Sbjct: 159 CKVEGVFPADKEIICDRPI--GPLVLSMG-IQCIRDDGKCARSRFWRLWTDGQT-SIVRC 214
Query: 363 GWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQ 422
L TGRTHQ+R L G PIV D +Y AA Q N +GK
Sbjct: 215 -------------MLETGRTHQIRVHLQYLGYPIVDDYIYNTAAWGQTKGKDGN-YGKSL 260
Query: 423 KEYASDDDKEMAVIEWISQHGMEPSVAIGLQ 453
+ D +E W Q ++P I +Q
Sbjct: 261 DQLRKDVLEEHKASNWHEQ--VDPEYEIRVQ 289
>gi|209965860|ref|YP_002298775.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209959326|gb|ACI99962.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 239
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 80/197 (40%), Gaps = 25/197 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGT------TDNIEESCATFASRALGLTTPLRTTHQID 270
+R++ ++LDKPAG +V G DN+E F GL P H++D
Sbjct: 7 QARLLYRDGLMLILDKPAGIAVHGGPGSRHGADNLER---YFEHLRFGLPRPPALAHRLD 63
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T GC+VL R + ++ ++ K Y A+ P G + + +
Sbjct: 64 RDTSGCLVLGRHPKALRKLGLLFQDGRIGKTYWAVVRGG-PEGDAGTIDKAL-LKRTDAR 121
Query: 331 EGWYLCQL-----EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
GW + L E E W G I D W ++ TGRTHQ+
Sbjct: 122 RGWKMIALPPGTPEAQEAV-TDWRVMGRGSLPKIGDLAW--------LELHPRTGRTHQI 172
Query: 386 RAQLAACGAPIVGDSMY 402
RA AA G P++GD +Y
Sbjct: 173 RAHCAAMGCPVLGDPVY 189
>gi|423460729|ref|ZP_17437526.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|401140782|gb|EJQ48338.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
Length = 307
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 51/247 (20%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGITVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKVKGKQGTIDAAIGRDRHHATRRRVSPK-------- 206
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + Y +E + +++ + ++L TGRTHQ+R ++ G P
Sbjct: 207 -------------GDQAI-TFYKVEKY-FKNQNVTF-VTLQLETGRTHQIRVHMSYNGNP 250
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 251 LVGDVLY 257
>gi|359463161|ref|ZP_09251724.1| pseudouridine synthase [Acaryochloris sp. CCMEE 5410]
Length = 306
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 190 DQIVEAGTYLRVHVHPKR---FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
D +++ G L H P + P +D+ + + + + KP+G V +E
Sbjct: 55 DTVLKQGQNLAYHRPPWQEPTVPLTFDVLYEDADV------LAIHKPSGLPVLPGGGFLE 108
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL- 305
+ + TP H++ T G V++AR+Q+ + +++R ++++K+Y AL
Sbjct: 109 HTLLHQVQQCFPQGTPF-PIHRLGRGTSGVVLMARSQQARAALSQQMRTRQIQKVYRALI 167
Query: 306 ----TTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC-KKVPWPDATVGKAYSIE 360
TT PL Q E+ + KVP+P+ +G Y+
Sbjct: 168 GPEQTTHPLE------------------------KQFEITQAIGKVPYPE--LGYIYAAT 201
Query: 361 DCGWPS---------RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQ 409
G P+ R A + + TGR HQ+R LA G P++GD +Y+ Q
Sbjct: 202 QKGRPAHSACTILQRRPEATLLAVTITTGRPHQIRIHLATIGYPLLGDPLYVAGGQPQ 259
>gi|83854943|ref|ZP_00948473.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83941466|ref|ZP_00953928.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
gi|83842786|gb|EAP81953.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83847286|gb|EAP85161.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
Length = 349
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 15/185 (8%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRAL-GLTTPLRTTHQIDNCTEGCVVLART 282
+ H++ L+KP G V G + + A + L R H++D T G +++ART
Sbjct: 97 DDHIIALNKPPGLPVQGGSGQSDRHVDALADALMFELDEKPRLVHRLDKDTSGVLIMART 156
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTA---PLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
+ + R ++ +K+Y A P I ++ R E Y +
Sbjct: 157 RSIAAALTASFRHRETRKIYWAAVAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCVHPK 216
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIV 397
ME T G + D ++ C + L+ TGRTHQ+RA +A G PIV
Sbjct: 217 DMET--------TEGAKRATTDYATLAQAGKRTCWMALIPVTGRTHQLRAHMAEIGHPIV 268
Query: 398 GDSMY 402
GD Y
Sbjct: 269 GDGKY 273
>gi|373857131|ref|ZP_09599874.1| pseudouridine synthase, RluA family [Bacillus sp. 1NLA3E]
gi|372453377|gb|EHP26845.1| pseudouridine synthase, RluA family [Bacillus sp. 1NLA3E]
Length = 300
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT-- 266
P +DI+ I+ + +V++KP G +++ A + L R
Sbjct: 80 PTYFDIN----ILYEDDHLLVVNKPGGMDTHPNEPTQKDTLANAVAYYLQAKGEFRKVLH 135
Query: 267 -HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMT 316
H++D T G V+ A+ +I + + E+K+K+ YLALT T P+G
Sbjct: 136 IHRLDQNTTGAVLFAKYSFIGAILDKLLEERKIKRTYLALTDGIMKKKQGTIDAPIGRDR 195
Query: 317 HYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIK 376
H+ ++P Q V K + + K YS+ C
Sbjct: 196 HHPTKRRVSPT--------GQKAVTHYKVL---NTFQNKNYSLIQC-------------D 231
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMY 402
L TGRTHQ+R L+ G PI GD++Y
Sbjct: 232 LDTGRTHQIRVHLSDIGHPITGDTLY 257
>gi|338530293|ref|YP_004663627.1| RNA pseudouridine synthase family protein [Myxococcus fulvus HW-1]
gi|337256389|gb|AEI62549.1| RNA pseudouridine synthase family protein [Myxococcus fulvus HW-1]
Length = 330
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 81/206 (39%), Gaps = 34/206 (16%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--LTTP 262
P P + DW +VLDKPAG + T + + T G P
Sbjct: 85 PTELPVVFQDDWL----------LVLDKPAGLPIHPTARYHKGTLVTLLRERFGERFAEP 134
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
H++D T G VV RT E C + R ++V K YLAL P T
Sbjct: 135 ---AHRLDRETSGLVVCGRTTESCRVLGRLFVSREVHKEYLALCEGHPPEDTFT------ 185
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA--YSIEDCGWPSRDYAYECKIKLL-- 378
AP ++EG L ++ V D GK + +RD A ++
Sbjct: 186 VEAP--IAEGTELIRIAVRI-------DPVEGKESRTRFQVLQRFTRDGAPFALLRCFPE 236
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMP 404
TGR HQ+R L G P+VGD MY P
Sbjct: 237 TGRQHQIRIHLHHAGFPLVGDKMYGP 262
>gi|377832427|ref|ZP_09815385.1| pseudouridine synthase [Lactobacillus mucosae LM1]
gi|377553619|gb|EHT15340.1| pseudouridine synthase [Lactobacillus mucosae LM1]
Length = 301
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 36/210 (17%)
Query: 200 RVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL 259
+ H P PR + N ++ V++KPAG + N T + A G
Sbjct: 77 QTHYQPTPHPRLNVLFENRDVL-------VVNKPAGQKM---HPNQPLEIGTLLNDAAGY 126
Query: 260 TTPLRTT-------HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
L+T+ H++D T G V +A+ I R+I + ++ + YLAL
Sbjct: 127 ---LKTSSADAFMVHRLDQATSGAVAIAKNPIVVPILDRRISQGQMHRQYLALVAG---- 179
Query: 313 GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
NI P W + + ++++ +K A + W ++ A
Sbjct: 180 ----------NITPDAGKFDWPIGR-DLLDQRKRRVNGFASQPALTYYQVAWRGKN-ATL 227
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+++L TGRTHQ+R LA G PI+GD +Y
Sbjct: 228 VRLQLATGRTHQLRVHLAYSGHPIIGDPLY 257
>gi|152990499|ref|YP_001356221.1| ribosomal large subunit pseudouridine synthase D [Nitratiruptor sp.
SB155-2]
gi|151422360|dbj|BAF69864.1| ribosomal large subunit pseudouridine synthase D [Nitratiruptor sp.
SB155-2]
Length = 319
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 22/216 (10%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT- 251
+++G + V + + + D+ ++ I E +VL+KPAG V E +
Sbjct: 52 LKSGDLVEVTIPEPKVSQPKDVHFDVERIYEDEDILVLNKPAGLVVHPAPSVKEPTLVDW 111
Query: 252 FASRALGLTT-----PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ + L+T H++D T G +V+A+ E +++++K + + YLA+
Sbjct: 112 LKANDISLSTLSGEERHGIVHRLDKETSGLIVIAKNNETHQALSKQLQDKSMGRYYLAIV 171
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
PL ++ +PI P+ + +E K + T K E G
Sbjct: 172 EPPLKEDLIIE--KPIARNPK---NRLKMGVVEGGRYAKSAFVKLTTSKNNKYELIGA-- 224
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
KL TGRTHQ+R LA+ I+GDS+Y
Sbjct: 225 ---------KLFTGRTHQIRVHLASINRHILGDSLY 251
>gi|413958515|ref|ZP_11397754.1| RluA family pseudouridine synthase [Burkholderia sp. SJ98]
gi|413941095|gb|EKS73055.1| RluA family pseudouridine synthase [Burkholderia sp. SJ98]
Length = 314
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 34/201 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G +V G + + A L H++D T G ++LA+ ++
Sbjct: 91 IVIDKPSGVAVHGGS-GVAFGVIEQLRNARPHAKFLELVHRLDRETSGVLMLAKKRQALV 149
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
H +IRE +V K Y A W ++ K
Sbjct: 150 GLHEQIRENRVDKRYYACGHGDW-------------------QSDWGRRRIVKAPLHKYV 190
Query: 348 WPDATVGKAYSIEDCGWPS----------RDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D + I++ G PS RDYA+ + +L TGRTHQ+R +A+ G PI
Sbjct: 191 AADGE--RRVRIQENGLPSHTVFNLIERWRDYAW-VEAELKTGRTHQIRVHMASIGLPIA 247
Query: 398 GDSMYMPAAI-AQLSSPGLNP 417
GD+ Y + +L+ P P
Sbjct: 248 GDAKYGDFTLNKELARPSAKP 268
>gi|330718647|ref|ZP_08313247.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc fallax KCTC
3537]
Length = 301
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 26/221 (11%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH---QIDNCTEG 275
II E ++++KP G T+V G D + + H ++D T G
Sbjct: 80 IIFENEHWLIVNKPFGVTTVPGHADRLHTLVNQVKGHLEEIEAEDLVPHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
V+LA+ + ++ +++ +V+K Y+A P GI+ IN AP +G ++
Sbjct: 140 LVLLAKHRFAHAVLDDQLQRHEVEKFYVAY-----PSGILEQNHGEIN-APIGRMDGDFI 193
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDC-GWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ EV E K P T Y +ED G + K++L TGRTHQ+R + G
Sbjct: 194 KR-EVREDGK---PSLT---EYWVEDVIGADTPHPMTRVKVQLHTGRTHQIRVHFSNIGH 246
Query: 395 PIVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS 427
P+VGD +Y + + L +PF + +E+ +
Sbjct: 247 PLVGDDLYGGPLVHNIQRQALHAYHMRFYDPFVEQYREFET 287
>gi|149913096|ref|ZP_01901630.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
gi|149813502|gb|EDM73328.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
Length = 348
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 215 DWNSRIIAVT----ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
D ++R+I + H++ L+KP G V G + + G R H++
Sbjct: 84 DADARMIQSAVIYRDDHIIALNKPPGLPVQGGSKQTRHVDGLADALRFGAEEKPRLVHRL 143
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G ++LAR++ R + +K+Y A A +P M + AP
Sbjct: 144 DKDTSGVLILARSRAVAKTLTAGFRHRDTRKIYWA-AVAGVPSPRMGTIRFGLVKAPGHG 202
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIED----------CGWPSRDYAYECKIKLLT 379
++G + E M C D+T G + D C W + +T
Sbjct: 203 AQG----EGEKMLCLHPEAVDSTPGAKRATTDFAVIESAGARCAW--------VALVPVT 250
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+RA +A G PIVGD Y
Sbjct: 251 GRTHQLRAHMAEIGHPIVGDGKY 273
>gi|99080132|ref|YP_612286.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
gi|99036412|gb|ABF63024.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
Length = 348
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I + +V++KPAG +V G + + + R H++D T G +VL
Sbjct: 94 VIYKDDDVLVINKPAGLAVQGGSGTTKHVDGLSEALRFDAEDKPRLVHRLDKDTSGLLVL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SE 331
AR ++ R K +K+Y AL G+ T Y+ I LV E
Sbjct: 154 ARNRKAAQGLTAAFRHKNTRKIYWALV-----AGVPTPYLGEIKTG--LVKAPGHGKSGE 206
Query: 332 GWYLCQLEVMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
G + ++ + DAT G +A++ + A ++ +TGRTHQ+RA +
Sbjct: 207 GEKMIPVDPRDV------DATPGAKRAHTYYATLYRVASRASWVAMEPVTGRTHQLRAHM 260
Query: 390 AACGAPIVGDSMY 402
A G PI+GD Y
Sbjct: 261 AGMGHPIIGDGKY 273
>gi|49184224|ref|YP_027476.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|65318659|ref|ZP_00391618.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Bacillus
anthracis str. A2012]
gi|165870408|ref|ZP_02215063.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167634370|ref|ZP_02392691.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|167639342|ref|ZP_02397614.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|170686762|ref|ZP_02877982.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|170706270|ref|ZP_02896731.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|177651449|ref|ZP_02934238.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190568721|ref|ZP_03021625.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|218902499|ref|YP_002450333.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|227815867|ref|YP_002815876.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|228913961|ref|ZP_04077585.1| Pseudouridine synthase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229604571|ref|YP_002865810.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|254682548|ref|ZP_05146409.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. CNEVA-9066]
gi|254726210|ref|ZP_05187992.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. A1055]
gi|254733966|ref|ZP_05191680.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Western North America USA6153]
gi|254740346|ref|ZP_05198037.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Kruger B]
gi|254753734|ref|ZP_05205769.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Vollum]
gi|254758830|ref|ZP_05210857.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Australia 94]
gi|270000596|ref|YP_003329034.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. Ames]
gi|291612209|ref|YP_003541023.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. 'Ames Ancestor']
gi|421507075|ref|ZP_15953996.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. UR-1]
gi|421637892|ref|ZP_16078489.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. BF1]
gi|49178151|gb|AAT53527.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|164713903|gb|EDR19425.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167512781|gb|EDR88155.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|167530258|gb|EDR92984.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|170128804|gb|EDS97670.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|170669285|gb|EDT20028.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|172082727|gb|EDT67790.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190560137|gb|EDV14118.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|218535216|gb|ACK87614.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|224552848|gb|ACN55061.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. 'Ames Ancestor']
gi|227003057|gb|ACP12800.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|228845683|gb|EEM90710.1| Pseudouridine synthase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229268979|gb|ACQ50616.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|269850296|gb|ACZ49998.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Ames]
gi|401822727|gb|EJT21876.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. UR-1]
gi|403395451|gb|EJY92690.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. BF1]
Length = 307
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 106/249 (42%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E+ + ++ + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVEEY-FKKQNVTF-VTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|456862038|gb|EMF80624.1| RNA pseudouridine synthase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 268
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI TE + +KP G V T D+ E+ + + L L LRT +++D T G
Sbjct: 1 MNIRIFYETEYFLFAEKPPGIPVHATKDSKRENFSDILQKQLSLEY-LRTVNRLDLDTSG 59
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGW 333
V + + R + K K+YL +++ +P + T Y++ N R V G
Sbjct: 60 LVFFCKNPDKNKEADRIL--KSSSKIYLCVSSGVIPEEHFLETCYIKDGNKKVRKVFSGG 117
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E + K+ P +V A KL TGR HQ+R L+ G
Sbjct: 118 DKAVTEFLTLKRNPKEHYSVLLA-------------------KLHTGRRHQIRLHLSEKG 158
Query: 394 APIVGDSMY 402
PIVGD +Y
Sbjct: 159 FPIVGDFVY 167
>gi|229172031|ref|ZP_04299596.1| Pseudouridine synthase [Bacillus cereus MM3]
gi|423404095|ref|ZP_17381268.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|228611374|gb|EEK68631.1| Pseudouridine synthase [Bacillus cereus MM3]
gi|401647302|gb|EJS64911.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
Length = 307
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 51/247 (20%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGITVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKVKGKQGTIDAAIGRDRHHATRRRVSPK-------- 206
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + Y +E + +++ + ++L TGRTHQ+R ++ G P
Sbjct: 207 -------------GDQAI-TFYKVEKY-FKNQNVTF-VTLQLETGRTHQIRVHMSYHGNP 250
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 251 LVGDVLY 257
>gi|424863214|ref|ZP_18287127.1| rRNA pseudouridylate synthase C [SAR86 cluster bacterium SAR86A]
gi|400757835|gb|EJP72046.1| rRNA pseudouridylate synthase C [SAR86 cluster bacterium SAR86A]
Length = 294
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+ +II ++++V++K AG +V G + N A + G L H++D T
Sbjct: 84 NLKEKIIYEDKNYIVINKDAGIAVHGGSKNYI-GIIDIARKIYGRNIDL--CHRLDKNTS 140
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
GC+VLA+ ++ F+ I+ + V+K Y+ + + I+ + RP+ Y
Sbjct: 141 GCLVLAKNKQSAKHFNNLIKNRLVQKTYVCVLKGNIRKSIVVN--RPV-----------Y 187
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ + + K +S+ K+K+ TGRTHQ+R A G
Sbjct: 188 KTKNSKSKEAHSKFEKIKNLKGFSV-------------VKVKIFTGRTHQIRIHAAMIGH 234
Query: 395 PIVGDSMY 402
PIV D+ Y
Sbjct: 235 PIVFDNKY 242
>gi|78485672|ref|YP_391597.1| pseudouridine synthase RluA-like protein [Thiomicrospira crunogena
XCL-2]
gi|78363958|gb|ABB41923.1| Pseudouridine synthase, Rlu family protein [Thiomicrospira
crunogena XCL-2]
Length = 238
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 24/199 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ + +V+DKPAG + D+ + F + LG+ L H++D T G
Sbjct: 10 VVFQSTEFIVVDKPAGMNFHSEPDSDGQKQPGLVVFVQQQLGVEE-LYPVHRLDKMTSGL 68
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+ A ++ F + ++++K YLA++T +P +GW
Sbjct: 69 VIFALSKASAKAFQQLFESRQIQKFYLAIST-----------HKPKK------KQGW--V 109
Query: 337 QLEVMECKKVPWP-DATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ ++M ++ W T+ + +R + TG+THQ+R L + GAP
Sbjct: 110 KGDMMPARRGSWKLSKTLENPAITQFISQNTRPGERWFLLNPHTGKTHQLRVALKSLGAP 169
Query: 396 IVGDSMYMPAAIAQLSSPG 414
I GD+ Y +A A+ G
Sbjct: 170 IAGDARYALSAEAEHEDRG 188
>gi|336316273|ref|ZP_08571173.1| 23S RNA-specific pseudouridylate synthase [Rheinheimera sp. A13L]
gi|335879395|gb|EGM77294.1| 23S RNA-specific pseudouridylate synthase [Rheinheimera sp. A13L]
Length = 235
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKP+G+S E A GL L H++D T G ++LA++ E +
Sbjct: 13 LVLDKPSGSSF---HSEFEPGVVALAEAQFGLK--LYAVHRLDKGTSGLLLLAKSSEAAA 67
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ ++++K YLALT +P +GW + ++++ ++
Sbjct: 68 LLSELFLNQQIQKFYLALTD-----------QKPKK------KQGW--VKGDMVQARRSA 108
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECK----IKLLTGRTHQVRAQLAACGAPIVGDSMY 402
W + + + S Y E + +K TG+THQVR L + A I+GD +Y
Sbjct: 109 WK--LTSRLTNPAVSYFVSAFYEVEGRRAFLVKPFTGKTHQVRVALKSVSAAILGDELY 165
>gi|320332730|ref|YP_004169441.1| RluA family pseudouridine synthase [Deinococcus maricopensis DSM
21211]
gi|319754019|gb|ADV65776.1| pseudouridine synthase, RluA family [Deinococcus maricopensis DSM
21211]
Length = 318
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 47/238 (19%)
Query: 191 QIVEAGTYLRVHVHP---KRFPRCYDIDW-NSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
+I++AG L + P + PR +DI + + ++AV KP+G +E
Sbjct: 76 EILQAGQVLVWNRPPWDEEATPRTFDIAYLDDALLAVI-------KPSGLPTMHGGGFLE 128
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ + TPL H++ T G V+ ART S R V+K Y AL
Sbjct: 129 NTLLSLVRAQHPEATPL---HRLGRATSGLVLFARTHAAASRLSEAWRMHHVEKRYRALA 185
Query: 307 TAPL---------PVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAY 357
+ L P+G + H PRL + V + GKA
Sbjct: 186 SGVLAQDRVTIEAPIGPVPH--------PRLGT------------VHGV----SATGKAS 221
Query: 358 SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL 415
C R+ A ++ + TGR HQ+R A G P+VGD +Y P + +PGL
Sbjct: 222 RSVACVLERREDATLLQVDIFTGRPHQIRIHTAFLGHPLVGDPLYGPGGQPKADNPGL 279
>gi|392424483|ref|YP_006465477.1| pseudouridine synthase, RluA family [Desulfosporosinus acidiphilus
SJ4]
gi|391354446|gb|AFM40145.1| pseudouridine synthase, RluA family [Desulfosporosinus acidiphilus
SJ4]
Length = 303
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+G V G T+ + + G +R H++D T GC++ A+
Sbjct: 90 IVLNKPSGLLVHPAGQTSHGTLSNYLACHYQQQGAIHAIRPLHRLDRETSGCILFAKDSH 149
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ ++E ++K+ Y A+ + + P G +T + P P + G
Sbjct: 150 TQTQLETLLKEGRIKRTYQAIVSGIVDPPSGTITLPIGPHPTKPNRRAVG---------- 199
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P D V +I + +P K+ L TGRTHQ+R L+ G PIVGD MY
Sbjct: 200 ----PVGDQAVTHYETIRN--YPGYSL---LKLTLETGRTHQIRVHLSHLGHPIVGDRMY 250
>gi|347531664|ref|YP_004838427.1| pseudouridine synthase [Roseburia hominis A2-183]
gi|345501812|gb|AEN96495.1| pseudouridine synthase [Roseburia hominis A2-183]
Length = 313
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 43/233 (18%)
Query: 188 HVDQIVEAGTYLRVH---------VHPKRFPR--CYDIDWNSRIIAVTESHVVLDKPAGT 236
H+++ + G L +H + P++ P CY+ E +V+DKPAG
Sbjct: 50 HMNETLHTGDLLCLHLEENTSGTSIFPQQIPLAICYE----------DEDLLVIDKPAGM 99
Query: 237 SVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKI 293
V + + ++ A + RA G P R +++D T G +++A+ ++ + +
Sbjct: 100 PVHPSAAHQRDTLANAVTGYYRAKGEIRPFRCINRLDADTSGLIIVAKNMLSAALLGKAM 159
Query: 294 REKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW-YLCQLEVMECKKVPWPDAT 352
+++ +++ YLA+ L G T + + P V +LC + + K A
Sbjct: 160 QQRMIRREYLAVVCGTL-TGSGTVHAPIARVKPGDVRRQVDFLCGDDAITHYKSLLCHA- 217
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPA 405
YS+ + L TGRTHQ+R ++A G P+ GD +Y PA
Sbjct: 218 ---PYSL-------------LSLHLETGRTHQIRVHMSALGYPLAGDQLYYPA 254
>gi|410451773|ref|ZP_11305775.1| RNA pseudouridine synthase [Leptospira sp. Fiocruz LV3954]
gi|410014539|gb|EKO76669.1| RNA pseudouridine synthase [Leptospira sp. Fiocruz LV3954]
Length = 254
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI+ ES++ +KP G V T D+ E+ A + L L LRT +++D T G
Sbjct: 6 LNIRILYENESYIFAEKPPGIPVHATKDSKRENFADILQKQLSLDY-LRTVNRLDLETSG 64
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGW 333
V + + R + K K+YL + + +P + T Y++ N R V G
Sbjct: 65 LVFFCKNPDKNKEADRIL--KTSVKIYLCVVSGTIPEEHFLETCYIKDGNKKVRKVFSGG 122
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E + ++ P +V A KL TGR HQ+R L+ G
Sbjct: 123 DKAVTEFLTLQQNPKERYSVLLA-------------------KLHTGRRHQIRLHLSEKG 163
Query: 394 APIVGDSMY 402
PI+GD +Y
Sbjct: 164 FPILGDRVY 172
>gi|330815964|ref|YP_004359669.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
gladioli BSR3]
gi|327368357|gb|AEA59713.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
gladioli BSR3]
Length = 342
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E+ +V++KPAG +V G + + A L H++D T G +++
Sbjct: 109 VVFEDEAMLVINKPAGVAVHGGS-GVSFGVIEQLREARPEARFLELVHRLDRETSGILMI 167
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H +IR+ ++ K Y A G +
Sbjct: 168 AKKRSALVGLHEQIRDNRMDKRYYAAV------------------------HGEWAADWG 203
Query: 340 VMECKKVPW-----PDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQ 384
KVP PD + ++D G PS DYA+ + +L TGRTHQ
Sbjct: 204 RRRAVKVPLFKYSTPDGE--RRVRVQDDGLPSHTVFNLIDRWSDYAF-LEAELKTGRTHQ 260
Query: 385 VRAQLAACGAPIVGDSMYMPAAI 407
+R LA G PIVGD+ Y A+
Sbjct: 261 IRVHLAHLGLPIVGDAKYGDFAL 283
>gi|157164896|ref|YP_001467348.1| P-protein [Campylobacter concisus 13826]
gi|112801995|gb|EAT99339.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Campylobacter concisus 13826]
Length = 323
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 24/197 (12%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR------T 265
Y+++++ II + +VL+KP V E + + ++ + + L
Sbjct: 70 YEVNFDIPIIYEDDDLIVLNKPPQIVVHQAPSVKEATLVEWLNKKGFMLSNLNGDVRAGI 129
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +V+A+ + ++ +K + ++YLALT PL I+ +PI
Sbjct: 130 VHRLDKGTSGAIVVAKNNFAHAKLSEQLSDKSMGRIYLALTDLPLKEDIIID--KPIGRN 187
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
P KK DA K+ + S KL TGRTHQ+
Sbjct: 188 PN-------------NRLKKAIVADAKFAKSAFV---NLLSEGGVNLIAAKLFTGRTHQI 231
Query: 386 RAQLAACGAPIVGDSMY 402
R LA+ I+GD +Y
Sbjct: 232 RVHLASINRHILGDDLY 248
>gi|359411844|ref|ZP_09204309.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357170728|gb|EHI98902.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 324
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP---IN 323
+++D T G VV ++ E + IR+ +++K Y L + G+ Y+ N
Sbjct: 142 NRLDRNTSGMVVFGKSFEGLKCINEAIRDDEIRKYYYTLAKGKVRDGLYEAYILKNPETN 201
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATV--GKAYSIEDCGWPSRDYAYECKIKLLTGR 381
++ + EV K++ +TV AYS+ D I L+TGR
Sbjct: 202 VSK--------IYDTEVKGSKRIAMEISTVESNGAYSLID-------------INLITGR 240
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQL--SSPGLN 416
+HQ+RA LA G PI+GDS Y + S GLN
Sbjct: 241 SHQIRAHLAHLGNPIIGDSKYGDKKLNSFFESKYGLN 277
>gi|196040729|ref|ZP_03108028.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|228932672|ref|ZP_04095546.1| Pseudouridine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229090345|ref|ZP_04221588.1| Pseudouridine synthase [Bacillus cereus Rock3-42]
gi|196028519|gb|EDX67127.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|228692928|gb|EEL46646.1| Pseudouridine synthase [Bacillus cereus Rock3-42]
gi|228826990|gb|EEM72750.1| Pseudouridine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 307
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E+ + + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVEE--YFKKQNVTLVTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|403216128|emb|CCK70626.1| hypothetical protein KNAG_0E03690 [Kazachstania naganishii CBS
8797]
Length = 354
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E ++V+DKP G V T T + PL H++D T G ++ ART +
Sbjct: 97 EQYLVVDKPCGIPVHPTGQYFHH---TLVEQLRATQGPLWPCHRLDRVTSGLMIFARTPQ 153
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIM-----THYMRPINIAPRLVSEGWYL-CQL 338
S R I+ K+YLA P G+ + + P P + Q
Sbjct: 154 AASKLQRAIQRHDAVKVYLARVQGKFPGGVTLVDSPVYTLEPKRGFPAALGPSRDASTQF 213
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
E+++ DA+ G++ +C + TGRTHQ+R LA G PIV
Sbjct: 214 ELIKY------DASTGQSL-------------VQCTPR--TGRTHQIRIHLARLGFPIVN 252
Query: 399 DSMY 402
D +Y
Sbjct: 253 DQLY 256
>gi|228926422|ref|ZP_04089494.1| Pseudouridine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229120931|ref|ZP_04250173.1| Pseudouridine synthase [Bacillus cereus 95/8201]
gi|228662591|gb|EEL18189.1| Pseudouridine synthase [Bacillus cereus 95/8201]
gi|228833246|gb|EEM78811.1| Pseudouridine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 307
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E+ + + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVEE--YFKKQNVTLVTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|254360710|ref|ZP_04976858.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|261496892|ref|ZP_05993260.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452744059|ref|ZP_21943910.1| RNA pseudouridine synthase [Mannheimia haemolytica serotype 6 str.
H23]
gi|153091280|gb|EDN73254.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|261307416|gb|EEY08751.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452087884|gb|EME04256.1| RNA pseudouridine synthase [Mannheimia haemolytica serotype 6 str.
H23]
Length = 217
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 35/182 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E +R L + + H++D T G ++LA +E +
Sbjct: 15 IIINKPEGLSV--HKDEAEIGLTELVARQLNVKQ-VWLVHRLDKITSGLLILALNKEAAA 71
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE-------GWYLCQLEV 340
F+ + K+ K Y AL+ +P R+V + W LC +
Sbjct: 72 RFYHLFEQHKIYKTYWALSDK-----------KPKKKQGRIVGDMQKSRNGAWKLCHSKE 120
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
P T ++S+ED R + + K TG+THQ+R + + G+PI+GD
Sbjct: 121 N-------PAVTQFISHSVEDS---LRHFILQPK----TGKTHQLRVAMKSLGSPILGDK 166
Query: 401 MY 402
+Y
Sbjct: 167 LY 168
>gi|289424437|ref|ZP_06426220.1| RNA pseudouridine synthase [Propionibacterium acnes SK187]
gi|289427345|ref|ZP_06429058.1| RNA pseudouridine synthase [Propionibacterium acnes J165]
gi|335053667|ref|ZP_08546499.1| RNA pseudouridine synthase [Propionibacterium sp. 434-HC2]
gi|386025243|ref|YP_005943549.1| putative RNA pseudouridylate synthase [Propionibacterium acnes 266]
gi|289155134|gb|EFD03816.1| RNA pseudouridine synthase [Propionibacterium acnes SK187]
gi|289159275|gb|EFD07466.1| RNA pseudouridine synthase [Propionibacterium acnes J165]
gi|332676702|gb|AEE73518.1| putative RNA pseudouridylate synthase [Propionibacterium acnes 266]
gi|333766454|gb|EGL43755.1| RNA pseudouridine synthase [Propionibacterium sp. 434-HC2]
Length = 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 64 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 117
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 118 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 176
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 177 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 227
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 228 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 277
>gi|365134632|ref|ZP_09343347.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613591|gb|EHL65100.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 316
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 32/188 (17%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------GLTTPLR-----TTHQIDNCTEGC 276
+V DKPAG V TD + T +RAL G P R H++D T G
Sbjct: 92 LVADKPAGLPV---TDEDGRTADTLINRALLYLYHKGEYAPERGWTPRLCHRLDTGTSGL 148
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVG-IMTHYMRPINIAPRLVSEGWY 334
V++A+TQ+ ++ ++E+ ++K YL +T P P + Y++ +
Sbjct: 149 VLIAKTQQAEALLLHLVKERMIEKKYLCVTFGHPSPAAATLRGYLQ----------KDAR 198
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
++ +++ P V K ++ G + +++L+TGRTHQ+RA LA+ G
Sbjct: 199 QARVRILDTS-APGAKDIVTKYKTLAVSGRLAL-----LEVELVTGRTHQIRAHLASIGC 252
Query: 395 PIVGDSMY 402
PI+GD Y
Sbjct: 253 PILGDGKY 260
>gi|328543393|ref|YP_004303502.1| pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
gi|326413138|gb|ADZ70201.1| Pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
Length = 334
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPAG +V G + +++ F ++ R H++D T G +++A+T++
Sbjct: 106 MVLNKPAGLAVQGGSGLSRHLDGMLDAFTNKK---GEKPRLVHRLDRETSGVLLVAKTRK 162
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
R R++ +K+Y AL A +P PR YL + E E
Sbjct: 163 AAQELTRAFRQRSTRKIYWALL-AGVP-------------KPRQGRISTYLARDEGSEKM 208
Query: 345 KVP-WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYM 403
KV D A S+ S ++ +TGRTHQ+RA A G PIVGD Y
Sbjct: 209 KVARHGDDEAQHAVSLYSVVEQSAQKLAWVSLRPVTGRTHQLRAHAAHIGHPIVGDDKYF 268
>gi|194761918|ref|XP_001963138.1| GF15796 [Drosophila ananassae]
gi|190616835|gb|EDV32359.1| GF15796 [Drosophila ananassae]
Length = 524
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 43/242 (17%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 179 LEAG---KLTVNNEKVPKDYKIKHNDLLANVVHRHEVPVTSQPITIVYMDKDIVVVNKPA 235
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT + ++IR
Sbjct: 236 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTSDKARELEQQIR 294
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EVMECKKVPWPDAT 352
++V+K Y+ P GI+ PI++ VS +C++ + +CK T
Sbjct: 295 NRQVQKEYVCRVEGRFPDGII-ECCEPIDV----VSYKIGVCKVSPKGKDCK------TT 343
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
+ + DC K LTGR HQ+R L G PI D +Y L
Sbjct: 344 FQRIGEVGDCSI--------VHCKPLTGRMHQIRVHLQYLGYPISNDPLYNHEVFGPLKG 395
Query: 413 PG 414
G
Sbjct: 396 RG 397
>gi|83814990|ref|YP_445861.1| ribosomal large subunit pseudouridine synthase A [Salinibacter
ruber DSM 13855]
gi|294507771|ref|YP_003571829.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber M8]
gi|83756384|gb|ABC44497.1| ribosomal large subunit pseudouridine synthase A [Salinibacter
ruber DSM 13855]
gi|294344099|emb|CBH24877.1| Ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber M8]
Length = 232
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRP 321
L H++D G + LAR+ E R+ RE+ V+K Y+ L +G T Y+
Sbjct: 49 LGLVHRLDRPASGVMALARSPEAARELSRQFRERLVEKRYVVAVEGTLQGIGAWTDYIAK 108
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ PRLV PD GK +++ S ++ L TGR
Sbjct: 109 PDRQPRLVD------------------PDHPEGKRAALDWQVLESSSAHTLLQVTLQTGR 150
Query: 382 THQVRAQLAACGAPIVGDSMY 402
+HQ+R Q A+ G P+VGD Y
Sbjct: 151 SHQIRLQAASRGHPVVGDDRY 171
>gi|365153567|ref|ZP_09350006.1| RluA family pseudouridine synthase [Campylobacter sp. 10_1_50]
gi|363651579|gb|EHL90637.1| RluA family pseudouridine synthase [Campylobacter sp. 10_1_50]
Length = 323
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 24/203 (11%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR- 264
K Y+++++ II + +VL+KP V E + + ++ + + L
Sbjct: 64 KEVQNEYEVNFDIPIIYEDDDLIVLNKPPQIVVHQAPSVKEATLVEWLNKKGFMLSNLNG 123
Query: 265 -----TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H++D T G +V+A+ + ++ +K + ++YLALT PL ++
Sbjct: 124 DVRAGIVHRLDKGTSGAIVVAKNNFAHAKLSEQLSDKSMGRIYLALTDLPLKEDVIID-- 181
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
+PI P KK DA + K+ + S KL T
Sbjct: 182 KPIGRNPN-------------NRLKKAIVADAKLAKSAFV---NLLSEGGVNLIAAKLFT 225
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R LA+ I+GD +Y
Sbjct: 226 GRTHQIRVHLASINRHILGDDLY 248
>gi|325289223|ref|YP_004265404.1| pseudouridine synthase [Syntrophobotulus glycolicus DSM 8271]
gi|324964624|gb|ADY55403.1| pseudouridine synthase, RluA family [Syntrophobotulus glycolicus
DSM 8271]
Length = 303
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 44/253 (17%)
Query: 165 VLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR----FPRCYDIDWNSRI 220
+LS ++ K + Q ++ H + ++AG ++ +++ P +D I
Sbjct: 28 LLSHSLVVRLKHQNKIQVNGQLVHTNYRLQAGDFVTINIDLSEENNIIPESIPLD----I 83
Query: 221 IAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+ E V ++KPAG S+ GGT + T+ + LG R +++D T G
Sbjct: 84 VYEDEDFVAVNKPAGMSIHPSRLGGT--GTLANAVTYHWQGLGRNILFRPINRLDKDTSG 141
Query: 276 CVVLARTQ-EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI-----NIAPRLV 329
V++ ++Q + IF+ ++++ K+ + Y+AL L H +PI N R+V
Sbjct: 142 LVLIGKSQFAHQGIFN-QLKQHKIDRRYIALVERALTRD-HGHIDQPIARPDANKRRRIV 199
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+ +PD T+ +KL TGRTHQ+R L
Sbjct: 200 HPAGQAATTHYQVLDR--YPDHTL-------------------LSLKLETGRTHQIRVHL 238
Query: 390 AACGAPIVGDSMY 402
+ G P+ GD +Y
Sbjct: 239 SYIGHPVSGDLLY 251
>gi|312866863|ref|ZP_07727076.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
gi|311097646|gb|EFQ55877.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
Length = 287
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 37/187 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E S S +G T H++D T G ++ A+
Sbjct: 91 IIVNKPEGMKTHAN-EPTEISLLNHVSSYVGSTC--YVVHRLDKETSGAILFAKNPFILP 147
Query: 288 IFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + +K +++ Y AL L +G H R + PR +G Y +
Sbjct: 148 ILNRILEDKNIQREYWALIQGSLAQKTIVYKDKIGRDRHDRRKRLVDPR---KGQY-AET 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+V + KK+ R+ +C++K TGRTHQ+R L+ G PIVG
Sbjct: 204 QVTQLKKI-------------------GRNSLVKCQLK--TGRTHQIRVHLSHHGHPIVG 242
Query: 399 DSMYMPA 405
D +Y PA
Sbjct: 243 DPLYNPA 249
>gi|417986192|ref|ZP_12626764.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|410526385|gb|EKQ01272.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
Length = 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAKTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNKAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|418004602|ref|ZP_12644619.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
gi|410549403|gb|EKQ23574.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
Length = 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNKAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|354808142|ref|ZP_09041581.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
gi|354513374|gb|EHE85382.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
Length = 280
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 212 YDIDWNSRIIAVTESH--VVLDKPAG--TSVGGTTDN--IEESCATFASRALGLTTPLRT 265
Y++D + E +V++KPAG T G +N + A + ++
Sbjct: 59 YELDERQSFSVLYEDDDLLVVNKPAGIKTHPNGPGENFTLMNQVAAYLAKQ---DKKAYM 115
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP-----------LPVGI 314
H+ID T G +++ +T I +R++ +K + + Y+A+ P LP+G+
Sbjct: 116 VHRIDQATSGVLLIGKTPIVIGILNRQLSQKTMSRQYIAIANDPEQTLLEHATINLPIGV 175
Query: 315 MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECK 374
P N R + L + + P AT+
Sbjct: 176 -----DPYNKRKRTIDYITGLSAVTHYQLLHRKGPAATLA-------------------- 210
Query: 375 IKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQ 409
+ L TGRTHQ+R LAA G PI+GD +Y P Q
Sbjct: 211 VNLETGRTHQIRLHLAADGHPILGDPLYFPTDSTQ 245
>gi|365093157|ref|ZP_09330229.1| pseudouridine synthase [Acidovorax sp. NO-1]
gi|363414669|gb|EHL21812.1| pseudouridine synthase [Acidovorax sp. NO-1]
Length = 220
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKPAG ++ C ++RA H++D T G V++AR +
Sbjct: 21 LVLDKPAGLLCVPGRGPDKQDC--LSARAQQRWPGALIVHRLDQATSGLVLMARHIDAQR 78
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
E++V K Y A+ G++ R N ++ W L V++ K
Sbjct: 79 QLSHAFAERQVHKRYQAVVQ-----GLLYSADRCWNEIELPIAADWERRPLRVVDAAKGK 133
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P T + + ++ + SR +++ +TGRTHQ+R LAA G PI+GD++Y
Sbjct: 134 -PSLTRWRLLAQDEAAFSSR-----VELEPVTGRTHQLRVHLAAIGHPILGDALY 182
>gi|256423396|ref|YP_003124049.1| pseudouridine synthase [Chitinophaga pinensis DSM 2588]
gi|256038304|gb|ACU61848.1| pseudouridine synthase [Chitinophaga pinensis DSM 2588]
Length = 570
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
II ES VV++KP+G SV G T I++S T ALG PL H++D T G +V
Sbjct: 370 IIYQDESVVVVNKPSGLRSVPGVT--IQDSVYTRLKHALGDIEPL-IVHRLDMDTSGLLV 426
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA-----------PLPVGIMTHYMRPINIAPR 327
+A+TQ R+ ++ V K Y AL + PL + + RP I
Sbjct: 427 VAKTQAAHKHIQRQFLQRTVSKRYTALLSKVIDTSEGEIDLPLTADL---FNRPRQI--- 480
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+C + W T +A + D WP LTGRTHQ+R
Sbjct: 481 -------VC-FTTGKKSVTRWKVVTRYQAMTKIDF-WP------------LTGRTHQLRM 519
Query: 388 QLA---ACGAPIVGDSMYMPAA 406
A APIVGD +Y AA
Sbjct: 520 HSAHPLGLNAPIVGDDLYGTAA 541
>gi|191637795|ref|YP_001986961.1| pseudouridine synthase [Lactobacillus casei BL23]
gi|301065920|ref|YP_003787943.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus casei str.
Zhang]
gi|385819534|ref|YP_005855921.1| RNA pseudouridine synthase yhcT [Lactobacillus casei LC2W]
gi|385822696|ref|YP_005859038.1| RNA pseudouridine synthase yhcT [Lactobacillus casei BD-II]
gi|409996654|ref|YP_006751055.1| RNA pseudouridine synthase YhcT [Lactobacillus casei W56]
gi|190712097|emb|CAQ66103.1| Pseudouridine synthase [Lactobacillus casei BL23]
gi|300438327|gb|ADK18093.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
str. Zhang]
gi|327381861|gb|AEA53337.1| Uncharacterized RNA pseudouridine synthase yhcT [Lactobacillus
casei LC2W]
gi|327385023|gb|AEA56497.1| Uncharacterized RNA pseudouridine synthase yhcT [Lactobacillus
casei BD-II]
gi|406357666|emb|CCK21936.1| Uncharacterized RNA pseudouridine synthase YhcT [Lactobacillus
casei W56]
Length = 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNKAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|417992407|ref|ZP_12632764.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
gi|410533398|gb|EKQ08077.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
Length = 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNKAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|259416795|ref|ZP_05740715.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
gi|259348234|gb|EEW60011.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
Length = 348
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KPAG +V G + + + R H++D T G +VLAR ++
Sbjct: 102 LVINKPAGLAVQGGSGTTKHVDGLSEALRFDAEDKPRLVHRLDKDTSGLLVLARNRKAAQ 161
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV--------SEGWYLCQLE 339
R K +K+Y AL G+ T Y+ I LV EG + ++
Sbjct: 162 GLTAAFRHKNTRKIYWALV-----AGVPTPYLGEIKTG--LVKAPGHGKSGEGEKMIPVD 214
Query: 340 VMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ DAT G +A++ + A ++ +TGRTHQ+RA +A G PI+
Sbjct: 215 PRDV------DATPGAKRAHTYYATLYRVASRASWVAMEPVTGRTHQLRAHMAGMGHPII 268
Query: 398 GDSMY 402
GD Y
Sbjct: 269 GDGKY 273
>gi|222110929|ref|YP_002553193.1| pseudouridine synthase [Acidovorax ebreus TPSY]
gi|221730373|gb|ACM33193.1| pseudouridine synthase [Acidovorax ebreus TPSY]
Length = 222
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 219 RIIAVTESHVVLDKPAGTS-VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R + V ++ +VL+KP+G V G + +++ +T RA L H++D T G V
Sbjct: 10 RSVHVDDTLLVLEKPSGLLCVPGRGPDKQDALST---RAQALWPDALIVHRLDQPTSGLV 66
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
++AR ++ V K Y A+ +P H ++GW
Sbjct: 67 LMARGAAMQRALSHSFAQRLVHKRYRAVVAGRMPPPDPAH------------ADGWGEIA 114
Query: 338 LEVM---ECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVRAQLAA 391
L + E + + DAT G+ S+ + D A + +++ +TGRTHQ+R LAA
Sbjct: 115 LPIAADWERRPLRVVDATHGQP-SLTRWRVLAHDAARDTTSVELEPVTGRTHQLRVHLAA 173
Query: 392 CGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYA 426
G PI+GD +Y A + Q +P L C E+A
Sbjct: 174 LGHPILGDQLYADAPV-QARAPRLL-LHACVLEFA 206
>gi|350561198|ref|ZP_08930037.1| pseudouridine synthase, RluA family [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781305|gb|EGZ35613.1| pseudouridine synthase, RluA family [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 319
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 84/204 (41%), Gaps = 48/204 (23%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTPLRTTHQIDNCTEG 275
I+ + ++VLDKPAG +V G S F A R L L H++D T G
Sbjct: 93 ILFEDDDYLVLDKPAGLAVHGG------SGLAFGLIEAMRELRPGVALELGHRLDRETSG 146
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
C++L R++ + FH +R V+K YLAL G PR
Sbjct: 147 CLILTRSRRALTAFHSALRSGGVEKRYLALLAGRWQGG------------PR-------H 187
Query: 336 CQLEV------MECKKVPWPDATVGKAYS--------IEDCGWPSRDYAYECKIKLLTGR 381
C L + +++ PD G A +E G D+ ++ + TGR
Sbjct: 188 CDLPIARGRDDSGRRRMRTPDRDDGDAARTATSLFTPLERFG----DFTL-MEVNIGTGR 242
Query: 382 THQVRAQLAACGAPIVGDSMYMPA 405
THQ+R +A G P+ GD Y A
Sbjct: 243 THQIRVHASALGHPVAGDHEYGDA 266
>gi|37519752|ref|NP_923129.1| pseudouridine synthase [Gloeobacter violaceus PCC 7421]
gi|35210743|dbj|BAC88124.1| gll0183 [Gloeobacter violaceus PCC 7421]
Length = 314
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II E +V+ KP G V +E + R P H++ T G V+L
Sbjct: 98 IIYADEQVLVVAKPGGLPVLPGGGFLEHTLLWQVRRRFAGEEPPVPIHRLGRGTSGLVLL 157
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM--RPINIAPRLVSEGWYLCQ 337
ART + ++R +++ KLY AL + G+ + +PI
Sbjct: 158 ARTHSSRAALSEQMRRQRIGKLYRALASG---TGMRDRFTIRQPIG-------------- 200
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRD----YAYECKIKLL-----TGRTHQVRAQ 388
KVP P +G ++ G P+R +C LL TGR HQ+R
Sbjct: 201 -------KVPHP--LLGTLWAAAADGLPARSDCVVLRRQCTDSLLAVAISTGRPHQIRIH 251
Query: 389 LAACGAPIVGDSMYMPAAIAQLSS 412
LAA G P+VGD ++ P +A+L +
Sbjct: 252 LAAAGYPLVGDPLFGPGGVARLDN 275
>gi|375309918|ref|ZP_09775196.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
gi|375077871|gb|EHS56101.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
Length = 309
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKR----FPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H I G LR+ + P PR YD+ +++ + +V+ KPAG +V
Sbjct: 55 RLRHEKGIEHTGDRLRLALFPVMDLGVIPRWYDL----KVLYEDDFCLVVHKPAGMAVHP 110
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
GG D ++ + A++ G+ +R H++D T G V+ A+ + ++R
Sbjct: 111 DGGVKDGPLTLDHAVASYYE-IHGIHAAVRHVHRLDGDTTGPVLYAKNEFALLKLDEQMR 169
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVG 354
K + + Y+AL +P + T W + + + ++ P T
Sbjct: 170 AKAIDRRYVALVRGEVPSSLRT--------------LDWPIGKDRHHKQRRRVSP--TGQ 213
Query: 355 KAYSIEDCG--WPSRDYAYE-CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
KA + + G W S A + L TGRTHQ+R L+ G P++GD +Y
Sbjct: 214 KAVTHVELGDVWGSGPSAISLVYLTLDTGRTHQIRVHLSHAGFPLLGDVLY 264
>gi|343518830|ref|ZP_08755817.1| pseudouridine synthase A [Haemophilus pittmaniae HK 85]
gi|343393310|gb|EGV05868.1| pseudouridine synthase A [Haemophilus pittmaniae HK 85]
Length = 219
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 221 IAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I ++H+ V++KP+G SV G +S + G P H++D T G ++
Sbjct: 16 IVYQDNHICVVNKPSGLLSVPGNKPEYFDSAMSRVKEKFGFCEP---AHRLDMATSGILL 72
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A ++ R+ RE++ +K YLAL G + +N +C
Sbjct: 73 FALSKAADRELKRQFREREPQKHYLALV-----FGHLQQESGEVNFP--------LICDW 119
Query: 339 EVMECKKVPWPDATVGK-AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
E +++ D VGK A + + D++ K+ +TGR+HQ+R + A G PI+
Sbjct: 120 ENRPRQRI---DFVVGKKACTHFEILERRNDFSTLVKLTPITGRSHQLRLHMLALGHPIL 176
Query: 398 GDSMYMP 404
GD Y P
Sbjct: 177 GDKFYAP 183
>gi|115376841|ref|ZP_01464064.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|115366144|gb|EAU65156.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
Length = 240
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 38/190 (20%)
Query: 228 VVLDKPAGTSV--GGTTDNIEESCATFASR----ALGLTTPLRTTHQIDNCTEGCVVLAR 281
V++DKP G V GG ++ E A A R G+ P H++D T GC++ AR
Sbjct: 23 VIVDKPVGLVVEPGGGAPSVVELLA--AQRPPFDVEGVARP-GVVHRLDRETSGCLMFAR 79
Query: 282 TQEYCSIFHRKIREKKVKKLY--LALTTAPLPVGIMTHYMR----PINIAPRLVSEGWYL 335
T + + ++K+V K Y L L P + Y R P R+ S
Sbjct: 80 TDAAAAALDQAFQQKRVDKRYWTLVLGETPEHERLEGPYGRDPQDPRKFTTRVKSARRAA 139
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
EV E + AT+ +++L TGRTHQ+R QL+ G P
Sbjct: 140 LSFEVRERLR----GATL-------------------LEVRLETGRTHQIRVQLSEAGFP 176
Query: 396 IVGDSMYMPA 405
++GDS+Y P+
Sbjct: 177 VLGDSVYGPS 186
>gi|225570461|ref|ZP_03779486.1| hypothetical protein CLOHYLEM_06562 [Clostridium hylemonae DSM
15053]
gi|225160658|gb|EEG73277.1| hypothetical protein CLOHYLEM_06562 [Clostridium hylemonae DSM
15053]
Length = 291
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 220 IIAVTESHVVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
II E +V+DKPAG S G + + + + SR G+ R +++D T G
Sbjct: 83 IIYEDEDLLVIDKPAGMPTQPSQGNHDNTLANALVCYYSRR-GIPFTYRCINRLDKNTSG 141
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV-GIMTHYM--RPINIAPRLVSE- 331
+++A+ SI + I+E+++ + YLAL P G +T + R + R V E
Sbjct: 142 LLIVAKHMLSASILYAMIKERRIHREYLALAEGLTPSEGTITAPIARRSRSTIERCVDET 201
Query: 332 -GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G Y C +++ + K YS+ + L TGRTHQ+R L
Sbjct: 202 NGEYACT----HYRRLDYR-----KGYSL-------------LSVTLDTGRTHQIRVHLK 239
Query: 391 ACGAPIVGDSMYMP 404
G P+ GD +Y P
Sbjct: 240 HIGHPLPGDFLYHP 253
>gi|116494411|ref|YP_806145.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
ATCC 334]
gi|116104561|gb|ABJ69703.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
ATCC 334]
Length = 300
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 29/229 (12%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKR-----FPRCYDIDWNSRIIAVTESHVVLDKPAGTS-- 237
R H +V +G + V P+ P +D+ I + +++++KPAG +
Sbjct: 43 RQRHTAYLVRSGDRILVQTAPEHAADSVVPYSHDL----AISYEDDDYLIVNKPAGVASI 98
Query: 238 --VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
VG +++ + + + + ++D T G +V A+ S+ +++
Sbjct: 99 PAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFAKHGLAHSLLDQQLHS 158
Query: 296 KKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGK 355
+ K Y+A+ TA P+ + PI VS+G+Y+ ++ GK
Sbjct: 159 QDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT-----------DTGK 202
Query: 356 AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
A E + L TGRTHQ+R AA G + GD +Y P
Sbjct: 203 ASVTEYRTLDENTAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDGLYSP 251
>gi|389878892|ref|YP_006372457.1| ribosomal large subunit pseudouridine synthase D [Tistrella mobilis
KA081020-065]
gi|388529676|gb|AFK54873.1| ribosomal large subunit pseudouridine synthase D [Tistrella mobilis
KA081020-065]
Length = 289
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
+R++ V++DKPAG V GG + F G H++D
Sbjct: 7 RARVLHRDRLVVIIDKPAGLPVHAGPRGGPNLELYLDALRF-----GYKEQPSLAHRLDR 61
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T GC+VL R + + R + +V+K+Y A+T +P P+ A R
Sbjct: 62 DTSGCLVLGRNRRALARLGRMFQGGRVEKVYWAVTDG-VPEAPEGRVDAPL--AKRTPGR 118
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
GW + + W +G+A W EC+ + TGRTHQ+R +A
Sbjct: 119 GWKMVVDPAGQAAVTDW--RVLGQAGG---RAW------IECRPR--TGRTHQIRVHMAH 165
Query: 392 CGAPIVGDSMY 402
G P+VGD +Y
Sbjct: 166 MGCPLVGDPVY 176
>gi|325578565|ref|ZP_08148665.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parainfluenzae ATCC 33392]
gi|325159801|gb|EGC71931.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parainfluenzae ATCC 33392]
Length = 225
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ T+ +++ KP G SV D E T + LG+ + H++D T G ++L
Sbjct: 5 IVYQTDDFIIIYKPCGLSV--HKDQSEIGLTTLLAEQLGVPQ-VWLVHRLDKVTSGLLIL 61
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
A E + F R E ++K YLAL+ G++ M+ + + W LCQ
Sbjct: 62 ALNAESAAEFFRLFSEHHIQKTYLALSNQKPKKKQGLIVGDMQKVR------NGAWKLCQ 115
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
K+ P + + S+ C R + +K TG+THQ+R + + G+PI+
Sbjct: 116 -----SKENP----AITRFESV-SCEPNLRLFI----LKPQTGKTHQLRVAMKSLGSPIL 161
Query: 398 GDSMY 402
GD +Y
Sbjct: 162 GDLLY 166
>gi|227535627|ref|ZP_03965676.1| pseudouridine synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239631158|ref|ZP_04674189.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|417980106|ref|ZP_12620787.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|417989077|ref|ZP_12629596.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|418001513|ref|ZP_12641654.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|418010290|ref|ZP_12650069.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
gi|227186757|gb|EEI66824.1| pseudouridine synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239525623|gb|EEQ64624.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|410525333|gb|EKQ00235.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|410539669|gb|EKQ14195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|410546383|gb|EKQ20640.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|410554216|gb|EKQ28198.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
Length = 300
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNTAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|126461165|ref|YP_001042279.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17029]
gi|126102829|gb|ABN75507.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17029]
Length = 346
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 18/183 (9%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP G S GG+ + G + H++D T G +VLART
Sbjct: 100 IVLNKPPGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 159
Query: 287 SIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R + +K+Y AL P P Y + AP G L + K
Sbjct: 160 RALSESFRHRNTRKIYWALVAGVPSPKQGSIKYA--LMKAPGHGRGGEGEKMLCIHPAKV 217
Query: 346 VPWPDATVGKA------YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+P+A + + C W + +TGRTHQ+RA +A G PIVGD
Sbjct: 218 GDYPEAKRAQTDFFTLWFLGSRCAW--------MALSPITGRTHQLRAHMAELGHPIVGD 269
Query: 400 SMY 402
Y
Sbjct: 270 GKY 272
>gi|418007477|ref|ZP_12647360.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
gi|410548925|gb|EKQ23108.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
Length = 300
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNTAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|417982964|ref|ZP_12623609.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
gi|417995687|ref|ZP_12635975.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|417998624|ref|ZP_12638840.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|418013280|ref|ZP_12652924.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
gi|410529095|gb|EKQ03924.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
gi|410536844|gb|EKQ11432.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|410540465|gb|EKQ14978.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|410555806|gb|EKQ29737.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
Length = 300
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 225 ESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ +++++KPAG + VG +++ + + + + ++D T G +V A
Sbjct: 84 DDYLIVNKPAGVASIPAVGRQNNSMANMVKAYLIKTKAESQAVHVVTRLDRDTSGLMVFA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ S+ +++ + K Y+A+ TA P+ + PI VS+G+Y+ ++
Sbjct: 144 KHGLAHSLLDQQLHSQDFVKQYVAIVTAQTPLATHGWIVLPIG-----VSDGFYMRRVVT 198
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
GKA E + L TGRTHQ+R AA G + GD
Sbjct: 199 -----------DTGKASVTEYRTLDQNTAGAMMLVTLHTGRTHQIRVHFAAIGHALYGDG 247
Query: 401 MYMP 404
+Y P
Sbjct: 248 LYSP 251
>gi|86156693|ref|YP_463478.1| pseudouridine synthase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773204|gb|ABC80041.1| Pseudouridine synthase, RluD [Anaeromyxobacter dehalogenans 2CP-C]
Length = 312
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 41/200 (20%)
Query: 227 HVVLDKPAGTSV-------GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNCTEGC 276
++V+DKPAG +V GGT N + A G + R ++D T GC
Sbjct: 86 YLVVDKPAGVAVHPLAPGEGGTLAN---AVAARHPECAGASPEPREGGAVQRLDLETSGC 142
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+ AR E H ++ V K+YLAL +P G G
Sbjct: 143 VLFARDPEAWEALHAQLGAHTVDKVYLALAVGRVPAG------------------GVCSV 184
Query: 337 QLEVMECKKVPWPDATVG--------KAYSIEDCGWPSRDYAYE--CKIKLLTGRTHQVR 386
L + +P PDA + E P R +A +++++TG HQ+R
Sbjct: 185 PLAQRGGRVLPAPDAEAEERLRARGLRPRPAETHYEPERRFAGHTLLRVRIVTGVMHQIR 244
Query: 387 AQLAACGAPIVGDSMYMPAA 406
A LA G P+ GD++Y AA
Sbjct: 245 AHLALLGHPVAGDALYGGAA 264
>gi|33151828|ref|NP_873181.1| 23S rRNA pseudouridylate synthase C [Haemophilus ducreyi 35000HP]
gi|34395752|sp|P59835.1|RLUC_HAEDU RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|33148049|gb|AAP95570.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
ducreyi 35000HP]
Length = 320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+G V G S +F AL P L H+ID T G +++A+
Sbjct: 106 LVLNKPSGIGVHGG------SGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKK 159
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI--APRLVSEGWYLCQLEV 340
+ H ++REK V+K YLAL + + IN+ AP L +E +
Sbjct: 160 RSALRALHEQLREKVVQKDYLAL--------VRGQWQAHINVIKAPLLKNE--LQSGERI 209
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
++ + P T +SIE+ +P+ A K +TGRTHQ+R G PI D
Sbjct: 210 VKVSEQGKPSET---RFSIEER-YPN---ATLIKASPITGRTHQIRVHTQYAGHPIACDD 262
Query: 401 MYMPAAI-AQLSSPGLN 416
Y A A+L GLN
Sbjct: 263 RYGDQAFDAKLKQAGLN 279
>gi|255711220|ref|XP_002551893.1| KLTH0B02376p [Lachancea thermotolerans]
gi|238933271|emb|CAR21455.1| KLTH0B02376p [Lachancea thermotolerans CBS 6340]
Length = 397
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 12/188 (6%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+++ E +V+DKP+G + T + + P +H++D T G ++
Sbjct: 114 KVVHECEDLLVIDKPSGIPIHPTGQYYQNTLVEVLKSHGKTVFP---SHRLDKITSGVLI 170
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP----VGIMTHYMRPINIAPRLVSEGWY 334
L + + +IR++ + K+YLA P +G +T + P + V Y
Sbjct: 171 LTKNPHMANKIQHQIRQRTMSKIYLARVDGAFPMADTLGSLTPFESPDKT--QTVDSAIY 228
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+L+ P K Y ++ +P D + +TGRTHQ+R LA G
Sbjct: 229 TVELKKQFPAAFSPPREAKTKFYPLK--YYPKSDETL-VACQPITGRTHQIRIHLARLGH 285
Query: 395 PIVGDSMY 402
PIV D Y
Sbjct: 286 PIVNDPFY 293
>gi|344340218|ref|ZP_08771144.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
gi|343799876|gb|EGV17824.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
Length = 420
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 84/198 (42%), Gaps = 52/198 (26%)
Query: 225 ESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG +V G + + ES R L L H++D T GC+V+++
Sbjct: 199 ERLLVIDKPAGLAVHGGSGLSYGLIESL-----RELRPGRELELVHRLDRDTSGCLVISK 253
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI-AP---RLVSEGWYLCQ 337
+ H IRE + K YLAL VG + +N+ AP L+ G + Q
Sbjct: 254 RRSALRELHELIREGGMDKRYLALI-----VGELERAK--VNVDAPLKKNLLQGGERMVQ 306
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSR-------DYAYECKI------KLLTGRTHQ 384
++ +D G P+R + E + +L+TGRTHQ
Sbjct: 307 VD--------------------QDDGKPARTVFRRLGRFRAESGVLTLVEAELITGRTHQ 346
Query: 385 VRAQLAACGAPIVGDSMY 402
+R A G P+ GD Y
Sbjct: 347 IRVHAAHLGTPLAGDPKY 364
>gi|332664097|ref|YP_004446885.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
gi|332332911|gb|AEE50012.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
Length = 237
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 215 DWNSRIIAVTESHVVLDKPAG--TSVGGTTD-NIEESCATFASRALGLTTPLRTTHQIDN 271
DW ++ + +KPAG T T D ++ + F A+ L H++D
Sbjct: 19 DW---VLYKNNQLIAFNKPAGIPTQTDKTGDKSLLQLAEIFTKSAVQLV------HRLDR 69
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLV 329
G V++++T + + + + R ++++K YLA+ A P G + H++ R V
Sbjct: 70 PASGIVLVSKTAKALANLNEQFRNRQIQKTYLAVVEALPAEPKGRLEHWIWKNGQTNRSV 129
Query: 330 ---SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+G Q ++E + + S D + ++KLLTGR HQ+R
Sbjct: 130 ISTEKGHANAQEAILEYQLL------------------GSSDRYHLLEVKLLTGRHHQIR 171
Query: 387 AQLAACGAPIVGDSMY 402
AQLAA G I GD Y
Sbjct: 172 AQLAAMGCIIKGDVKY 187
>gi|418532008|ref|ZP_13097917.1| pseudouridine synthase [Comamonas testosteroni ATCC 11996]
gi|371450803|gb|EHN63846.1| pseudouridine synthase [Comamonas testosteroni ATCC 11996]
Length = 214
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 28/198 (14%)
Query: 225 ESHVVLDKPAGTS-VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
E +VLDKP+G V G + ++ + A R G H++D T G VV+AR
Sbjct: 5 EHLLVLDKPSGLLCVPGRGPDKQDCLSLRALRHFGDAL---VVHRLDQATSGLVVMARNP 61
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM-- 341
+ E+KV K Y+A+ L R GW L L +
Sbjct: 62 AVQRQLSQAFAERKVDKRYMAVVAGELQAHSEAADTR-----------GWQLIDLPIAAD 110
Query: 342 -ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI-------KLLTGRTHQVRAQLAACG 393
E + + + GK+ W ++ + I LTGRTHQ+R +AA G
Sbjct: 111 WERRPLRVINHETGKS---SQTLWRVIEHTTQSGIPGTRVLLSPLTGRTHQLRLHMAAIG 167
Query: 394 APIVGDSMYMPAAIAQLS 411
P++GD++Y A+A S
Sbjct: 168 HPMLGDALYASEAVASAS 185
>gi|52144044|ref|YP_082785.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
E33L]
gi|51977513|gb|AAU19063.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
E33L]
Length = 307
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSVG-------GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++KP GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E+ + + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVEE--YFKKQNVTLVTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|331005269|ref|ZP_08328661.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium IMCC1989]
gi|330420946|gb|EGG95220.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium IMCC1989]
Length = 362
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 38/212 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT----------THQI 269
I+ + +V++KP+G +V G + +LGL R H++
Sbjct: 114 ILFENDDLMVVNKPSGLAVHGGS-----------GISLGLIESFRQMRPDNRFLELVHRL 162
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHY 318
D T GC+++A+ + +++RE +++K+Y AL T+PL ++
Sbjct: 163 DRDTSGCIMIAKKRSSLRYIQQELREGRIQKIYRALVDGRWPNRRKNVTSPLVKNQLSSG 222
Query: 319 MRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI--- 375
R + IA + +EG + E ++ + + G+ ++ G D EC +
Sbjct: 223 ERVVRIA-QPETEGAKASRTEYNVIQRYQYTANSHGECNGGQNGGQF--DGRRECTLVEA 279
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
K +TGRTHQ+R + G I+GD Y I
Sbjct: 280 KPITGRTHQIRVHCQSVGCAIIGDDKYCDGEI 311
>gi|387774020|ref|ZP_10129300.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parahaemolyticus HK385]
gi|386903107|gb|EIJ67927.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parahaemolyticus HK385]
Length = 214
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
V+++KPAG SV D ++ LG+ + H++D T G ++LA +E +
Sbjct: 15 VIINKPAGISV--HKDQQAVGLTELVAKQLGVEQ-VWLVHRLDKITSGLLILALNKEAAA 71
Query: 288 IFHRKIREKKVKKLYLALT---TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
F+ + K++K Y A++ I+ + N A W LC +
Sbjct: 72 NFYTLFEQHKIQKTYWAISDKKPKKKQGKIVGDMQKSRNGA-------WKLCHSKENSA- 123
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
T +++SIE P R++ + K TG+THQ+R + + G+PI+GDS+Y
Sbjct: 124 ------ITQFRSHSIEP---PLRNFILQPK----TGKTHQLRVAMKSLGSPILGDSLY 168
>gi|167570710|ref|ZP_02363584.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
oklahomensis C6786]
Length = 335
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ + L+KPAG +V G + + A L H++D T G ++L
Sbjct: 103 ILFEDDAIIALNKPAGVAVHGGS-GVAFGVIEQMRHARPHAKFLELVHRLDRETSGILML 161
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H +IRE ++ K Y A + R + L +
Sbjct: 162 AKKRSALVGLHEQIRENRMDKRYFACVHGEW----APDWGRRRAVKAPLFKYSTPDGERR 217
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V ++ P TV +++ DC WP DYA + +L TGRTHQ+R LA G PIVGD
Sbjct: 218 V-RVQEDGLPSHTV---FNLVDC-WP--DYAL-LEAELKTGRTHQIRVHLAHLGLPIVGD 269
Query: 400 SMYMPAAI 407
+ Y A+
Sbjct: 270 AKYGDFAL 277
>gi|365963933|ref|YP_004945499.1| RNA pseudouridylate synthase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365966197|ref|YP_004947762.1| RNA pseudouridylate synthase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365975113|ref|YP_004956672.1| RNA pseudouridylate synthase [Propionibacterium acnes TypeIA2
P.acn33]
gi|387504670|ref|YP_005945899.1| putative RNA pseudouridylate synthase [Propionibacterium acnes
6609]
gi|407936680|ref|YP_006852322.1| RNA pseudouridylate synthase [Propionibacterium acnes C1]
gi|335278715|gb|AEH30620.1| putative RNA pseudouridylate synthase [Propionibacterium acnes
6609]
gi|365740614|gb|AEW84816.1| RNA pseudouridylate synthase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365742878|gb|AEW82572.1| RNA pseudouridylate synthase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365745112|gb|AEW80309.1| RNA pseudouridylate synthase [Propionibacterium acnes TypeIA2
P.acn33]
gi|407905261|gb|AFU42091.1| putative RNA pseudouridylate synthase [Propionibacterium acnes C1]
gi|456738296|gb|EMF62930.1| RNA pseudouridylate synthase [Propionibacterium acnes FZ1/2/0]
Length = 270
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 12 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 65
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 66 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 124
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 125 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 175
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 176 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 225
>gi|85703848|ref|ZP_01034951.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
gi|85671168|gb|EAQ26026.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
Length = 347
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ HV+ L+KP G V G + + G R H++D T G ++LART+
Sbjct: 97 DDHVIALNKPPGLPVQGGSKQTRHVDGLAEALRFGAEEKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
E R + +K+Y A A +P M + AP ++G + E M C
Sbjct: 157 EAAKGLTAAFRHRNTRKIYWA-AVAGVPTPRMGTVRYGLVKAPGHGAKG----EGEKMIC 211
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSM 401
++T G + D A + L+ TGRTHQ+RA +A G P+VGD
Sbjct: 212 VHPREVESTPGAKPATTDYAVIEAAGARTSWMALIPVTGRTHQLRAHMAEIGHPVVGDGK 271
Query: 402 Y 402
Y
Sbjct: 272 Y 272
>gi|354605882|ref|ZP_09023855.1| hypothetical protein HMPREF1003_00422 [Propionibacterium sp.
5_U_42AFAA]
gi|422383903|ref|ZP_16464044.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL096PA3]
gi|422426681|ref|ZP_16503599.1| RNA pseudouridine synthase [Propionibacterium acnes HL087PA1]
gi|422429501|ref|ZP_16506406.1| RNA pseudouridine synthase [Propionibacterium acnes HL072PA2]
gi|422434559|ref|ZP_16511417.1| RNA pseudouridine synthase [Propionibacterium acnes HL083PA2]
gi|422437187|ref|ZP_16514034.1| RNA pseudouridine synthase [Propionibacterium acnes HL092PA1]
gi|422446074|ref|ZP_16522819.1| RNA pseudouridine synthase [Propionibacterium acnes HL027PA1]
gi|422448051|ref|ZP_16524783.1| RNA pseudouridine synthase [Propionibacterium acnes HL036PA3]
gi|422450592|ref|ZP_16527309.1| RNA pseudouridine synthase [Propionibacterium acnes HL030PA2]
gi|422452725|ref|ZP_16529421.1| RNA pseudouridine synthase [Propionibacterium acnes HL087PA3]
gi|422455547|ref|ZP_16532217.1| RNA pseudouridine synthase [Propionibacterium acnes HL030PA1]
gi|422479150|ref|ZP_16555560.1| RNA pseudouridine synthase [Propionibacterium acnes HL063PA1]
gi|422482096|ref|ZP_16558495.1| RNA pseudouridine synthase [Propionibacterium acnes HL036PA1]
gi|422488182|ref|ZP_16564513.1| RNA pseudouridine synthase [Propionibacterium acnes HL013PA2]
gi|422489619|ref|ZP_16565946.1| RNA pseudouridine synthase [Propionibacterium acnes HL020PA1]
gi|422492180|ref|ZP_16568488.1| RNA pseudouridine synthase [Propionibacterium acnes HL086PA1]
gi|422497448|ref|ZP_16573721.1| RNA pseudouridine synthase [Propionibacterium acnes HL002PA3]
gi|422499869|ref|ZP_16576125.1| RNA pseudouridine synthase [Propionibacterium acnes HL063PA2]
gi|422503651|ref|ZP_16579888.1| RNA pseudouridine synthase [Propionibacterium acnes HL027PA2]
gi|422504374|ref|ZP_16580608.1| RNA pseudouridine synthase [Propionibacterium acnes HL036PA2]
gi|422508845|ref|ZP_16585003.1| RNA pseudouridine synthase [Propionibacterium acnes HL046PA2]
gi|422513834|ref|ZP_16589955.1| RNA pseudouridine synthase [Propionibacterium acnes HL087PA2]
gi|422514861|ref|ZP_16590979.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA2]
gi|422523196|ref|ZP_16599208.1| RNA pseudouridine synthase [Propionibacterium acnes HL053PA2]
gi|422531857|ref|ZP_16607805.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA1]
gi|422534793|ref|ZP_16610716.1| RNA pseudouridine synthase [Propionibacterium acnes HL072PA1]
gi|422536397|ref|ZP_16612305.1| RNA pseudouridine synthase [Propionibacterium acnes HL078PA1]
gi|422538876|ref|ZP_16614750.1| RNA pseudouridine synthase [Propionibacterium acnes HL013PA1]
gi|422541659|ref|ZP_16617517.1| RNA pseudouridine synthase [Propionibacterium acnes HL037PA1]
gi|422544206|ref|ZP_16620046.1| RNA pseudouridine synthase [Propionibacterium acnes HL082PA1]
gi|422545986|ref|ZP_16621813.1| RNA pseudouridine synthase [Propionibacterium acnes HL050PA3]
gi|422550396|ref|ZP_16626193.1| RNA pseudouridine synthase [Propionibacterium acnes HL050PA1]
gi|422551358|ref|ZP_16627151.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA3]
gi|422555198|ref|ZP_16630968.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA2]
gi|422556749|ref|ZP_16632496.1| RNA pseudouridine synthase [Propionibacterium acnes HL025PA2]
gi|422561973|ref|ZP_16637651.1| RNA pseudouridine synthase [Propionibacterium acnes HL046PA1]
gi|422567189|ref|ZP_16642815.1| RNA pseudouridine synthase [Propionibacterium acnes HL002PA2]
gi|422571032|ref|ZP_16646627.1| RNA pseudouridine synthase [Propionibacterium acnes HL067PA1]
gi|422577726|ref|ZP_16653255.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA4]
gi|313765077|gb|EFS36441.1| RNA pseudouridine synthase [Propionibacterium acnes HL013PA1]
gi|313792621|gb|EFS40707.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA1]
gi|313803157|gb|EFS44353.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA2]
gi|313806800|gb|EFS45298.1| RNA pseudouridine synthase [Propionibacterium acnes HL087PA2]
gi|313817590|gb|EFS55304.1| RNA pseudouridine synthase [Propionibacterium acnes HL046PA2]
gi|313821584|gb|EFS59298.1| RNA pseudouridine synthase [Propionibacterium acnes HL036PA1]
gi|313824472|gb|EFS62186.1| RNA pseudouridine synthase [Propionibacterium acnes HL036PA2]
gi|313826817|gb|EFS64531.1| RNA pseudouridine synthase [Propionibacterium acnes HL063PA1]
gi|313829136|gb|EFS66850.1| RNA pseudouridine synthase [Propionibacterium acnes HL063PA2]
gi|313839569|gb|EFS77283.1| RNA pseudouridine synthase [Propionibacterium acnes HL086PA1]
gi|314916163|gb|EFS79994.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA4]
gi|314917426|gb|EFS81257.1| RNA pseudouridine synthase [Propionibacterium acnes HL050PA1]
gi|314921765|gb|EFS85596.1| RNA pseudouridine synthase [Propionibacterium acnes HL050PA3]
gi|314926247|gb|EFS90078.1| RNA pseudouridine synthase [Propionibacterium acnes HL036PA3]
gi|314930967|gb|EFS94798.1| RNA pseudouridine synthase [Propionibacterium acnes HL067PA1]
gi|314955362|gb|EFS99767.1| RNA pseudouridine synthase [Propionibacterium acnes HL027PA1]
gi|314961609|gb|EFT05710.1| RNA pseudouridine synthase [Propionibacterium acnes HL002PA2]
gi|314963927|gb|EFT08027.1| RNA pseudouridine synthase [Propionibacterium acnes HL082PA1]
gi|314969134|gb|EFT13232.1| RNA pseudouridine synthase [Propionibacterium acnes HL037PA1]
gi|314979975|gb|EFT24069.1| RNA pseudouridine synthase [Propionibacterium acnes HL072PA2]
gi|314987166|gb|EFT31258.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA2]
gi|314990633|gb|EFT34724.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA3]
gi|315079107|gb|EFT51114.1| RNA pseudouridine synthase [Propionibacterium acnes HL053PA2]
gi|315081549|gb|EFT53525.1| RNA pseudouridine synthase [Propionibacterium acnes HL078PA1]
gi|315083025|gb|EFT55001.1| RNA pseudouridine synthase [Propionibacterium acnes HL027PA2]
gi|315086559|gb|EFT58535.1| RNA pseudouridine synthase [Propionibacterium acnes HL002PA3]
gi|315087963|gb|EFT59939.1| RNA pseudouridine synthase [Propionibacterium acnes HL072PA1]
gi|315102262|gb|EFT74238.1| RNA pseudouridine synthase [Propionibacterium acnes HL046PA1]
gi|315107443|gb|EFT79419.1| RNA pseudouridine synthase [Propionibacterium acnes HL030PA1]
gi|315109736|gb|EFT81712.1| RNA pseudouridine synthase [Propionibacterium acnes HL030PA2]
gi|327334072|gb|EGE75787.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL096PA3]
gi|327444523|gb|EGE91177.1| RNA pseudouridine synthase [Propionibacterium acnes HL013PA2]
gi|327454203|gb|EGF00858.1| RNA pseudouridine synthase [Propionibacterium acnes HL087PA3]
gi|327456261|gb|EGF02916.1| RNA pseudouridine synthase [Propionibacterium acnes HL083PA2]
gi|327457465|gb|EGF04120.1| RNA pseudouridine synthase [Propionibacterium acnes HL092PA1]
gi|328755960|gb|EGF69576.1| RNA pseudouridine synthase [Propionibacterium acnes HL087PA1]
gi|328758029|gb|EGF71645.1| RNA pseudouridine synthase [Propionibacterium acnes HL020PA1]
gi|328758923|gb|EGF72539.1| RNA pseudouridine synthase [Propionibacterium acnes HL025PA2]
gi|353558020|gb|EHC27386.1| hypothetical protein HMPREF1003_00422 [Propionibacterium sp.
5_U_42AFAA]
Length = 281
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 23 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 76
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 77 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 135
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 136 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 186
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 187 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 236
>gi|219846960|ref|YP_002461393.1| pseudouridine synthase [Chloroflexus aggregans DSM 9485]
gi|219541219|gb|ACL22957.1| pseudouridine synthase [Chloroflexus aggregans DSM 9485]
Length = 307
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 102/254 (40%), Gaps = 22/254 (8%)
Query: 167 SKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTES 226
++++I+G + ++ D AG L V + P R + N II +
Sbjct: 31 GRQAAIRGGLWQHGRRV----SADTPARAGETLLVRLPPVGGYRDAPLTLN-HIIYEDDD 85
Query: 227 HVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRTTHQIDNCTEGCVVLART 282
+V++KP G T + + S A R L GL L HQ+D T G +V+++
Sbjct: 86 LLVINKPPACYTGDTPWDTQGSVLAVARRLLTERDGLVPTLHLAHQLDAGTSGILVISKH 145
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ +V K YLAL P I R + W L E E
Sbjct: 146 PRANAPLQAAFNHGQVDKRYLALCAGHPPTATEL-----ITGHGRAAAGRWRL--YEQAE 198
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI--KLLTGRTHQVRAQLAACGAPIVGDS 400
KV V +A++ + R Y + K LTGRTHQ+R L A G P++GD
Sbjct: 199 IGKVLPNGQRVKRAHTQIEL---RRQYGDVALVWAKPLTGRTHQIRLHLVALGCPLLGDE 255
Query: 401 MY-MPAAIAQLSSP 413
Y P +A + P
Sbjct: 256 RYGGPTTVAGMLIP 269
>gi|451979546|ref|ZP_21927962.1| Pseudouridine synthase [Nitrospina gracilis 3/211]
gi|451763198|emb|CCQ89153.1| Pseudouridine synthase [Nitrospina gracilis 3/211]
Length = 227
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 79/197 (40%), Gaps = 38/197 (19%)
Query: 220 IIAVTESHVVLDKPAG-----------TSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
I+ V + +DKPAG + T D I+ LGL H+
Sbjct: 11 ILYVDNHLIAVDKPAGVLTQSDAPGAPNLLDQTRDWIKNEYGKPGKVYLGLV------HR 64
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
+D G V+ ART + S + R +K YLA P + RL
Sbjct: 65 LDRPVSGVVLFARTSKGASRLSEQFRNHTARKFYLARVEGA-----------PEKESDRL 113
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKA---YSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
V YL + M+ P P +A Y++ + R +++L TGR HQ+
Sbjct: 114 VH---YLRKERSMKATVFPRPTPEAKQAELTYTVLE----KRGETSLVEVELHTGRFHQI 166
Query: 386 RAQLAACGAPIVGDSMY 402
RAQLA G P+VGD+ Y
Sbjct: 167 RAQLAFLGHPLVGDAKY 183
>gi|347534684|ref|YP_004841354.1| hypothetical protein LSA_10240 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504740|gb|AEN99422.1| hypothetical protein LSA_10240 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 295
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 45/199 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL----TTPLRTTH---QIDNC 272
I+ +++++++KP + T + T +R LG P R H ++D
Sbjct: 81 ILFENDNYLIVNKPVNVA---TVPSHLYPNDTMVNRVLGYYLRKDYPSRKIHVVNRLDRG 137
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLA---------LTTAPLPVGIMTHYMRPIN 323
T G V+ A+ SI ++ + ++KK Y+A + LP+G +P +
Sbjct: 138 TSGPVIFAKNSLAHSILDKEFKNHRIKKSYIAGLVGRIPYQHASIKLPIG-----RKPDS 192
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
R+V +G GK E + + D KI+L TGRTH
Sbjct: 193 FLERMVIDG---------------------GKVSDTEFWKYKTNDQYSLVKIRLHTGRTH 231
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R A G P++GD +Y
Sbjct: 232 QIRVHFATIGYPLIGDWLY 250
>gi|422442290|ref|ZP_16519093.1| RNA pseudouridine synthase [Propionibacterium acnes HL002PA1]
gi|314959443|gb|EFT03545.1| RNA pseudouridine synthase [Propionibacterium acnes HL002PA1]
Length = 281
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 23 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 76
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 77 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 135
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 136 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 186
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 187 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 236
>gi|294792627|ref|ZP_06757774.1| ribosomal large subunit pseudouridine synthase, RluA family
[Veillonella sp. 6_1_27]
gi|294456526|gb|EFG24889.1| ribosomal large subunit pseudouridine synthase, RluA family
[Veillonella sp. 6_1_27]
Length = 300
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 108/265 (40%), Gaps = 41/265 (15%)
Query: 151 PEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR 210
P ++ V K V + LS R + + R+ H + ++ G L + + P+
Sbjct: 23 PTELTVSKYVKERFSLSSRDIQMMFRKKRVKVNSRVAHSQRALKKGDVLTLEL-PQDKDY 81
Query: 211 CYDID--------WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
D++ ++ + V + +L PAG + T N A + ++ +
Sbjct: 82 GVDVEKGPITVLYEDAHTLVVNKDPFMLVHPAGQTKSCTLSNY---VAGYYAKK-NVVHK 137
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R H++D T GC++ +T+E + +++ ++ ++Y L + M PI
Sbjct: 138 VRPVHRLDRDTSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGRIDADGMVD--API 195
Query: 323 NIAP-----RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 377
+ P R++ E Q E + D T+ + KL
Sbjct: 196 GVDPVFDNRRVIDEFGQPAQTEYIVLNH--EGDNTL-------------------LRFKL 234
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
LTGRTHQ+R + G PIVGD+MY
Sbjct: 235 LTGRTHQIRVHMEHIGHPIVGDAMY 259
>gi|167563550|ref|ZP_02356466.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
oklahomensis EO147]
Length = 247
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ + L+KPAG +V G + + A L H++D T G ++L
Sbjct: 15 ILFEDDAIIALNKPAGVAVHGGS-GVAFGVIEQMRHARPHAKFLELVHRLDRETSGILML 73
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H +IRE ++ K Y A + R + L +
Sbjct: 74 AKKRSALVGLHEQIRENRMDKRYFACVHGEW----APDWGRRRAVKAPLFKYSTPDGERR 129
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V ++ P TV +++ DC WP DYA + +L TGRTHQ+R LA G PIVGD
Sbjct: 130 V-RVQEDGLPSHTV---FNLVDC-WP--DYAL-LEAELKTGRTHQIRVHLAHLGLPIVGD 181
Query: 400 SMY 402
+ Y
Sbjct: 182 AKY 184
>gi|217976505|ref|YP_002360652.1| pseudouridine synthase [Methylocella silvestris BL2]
gi|217501881|gb|ACK49290.1| pseudouridine synthase [Methylocella silvestris BL2]
Length = 234
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 16/190 (8%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+ + N+R++ +V+DKPAG +V A F GL H++D
Sbjct: 10 EAELNARLLYRDGLMLVIDKPAGVAVHRGPKGGANLEAAFHWLRFGLPRSPALAHRLDRD 69
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T GC+VL R + ++ K+ K Y+++ + + + R + G
Sbjct: 70 TSGCLVLGRHHKALEKLGLLFKQGKIGKTYVSIVNGRPGA---EEGLIDLPLGRRDETRG 126
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
W++ + + W G A+++ + LTGRTHQ+R AA
Sbjct: 127 WWMKVDPAGQSSQTRWRILAKGPAHTL-------------LALTPLTGRTHQLRVHCAAM 173
Query: 393 GAPIVGDSMY 402
G I+GD +Y
Sbjct: 174 GFSILGDPIY 183
>gi|229029062|ref|ZP_04185161.1| Pseudouridine synthase [Bacillus cereus AH1271]
gi|228732342|gb|EEL83225.1| Pseudouridine synthase [Bacillus cereus AH1271]
Length = 307
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 51/247 (20%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---VEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKVKGKQGTVDAAIGRDRHHATRRRVSPK-------- 206
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + Y +E + ++ + ++L TGRTHQ+R ++ G P
Sbjct: 207 -------------GDQAI-TYYKVEKY-FKKQNVTF-VTLQLETGRTHQIRVHMSYHGNP 250
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 251 LVGDVLY 257
>gi|50843747|ref|YP_056974.1| RNA pseudouridylate synthase [Propionibacterium acnes KPA171202]
gi|50841349|gb|AAT84016.1| putative RNA pseudouridylate synthase [Propionibacterium acnes
KPA171202]
Length = 295
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 37 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 90
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 91 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 149
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 150 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 200
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 201 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 250
>gi|397677850|ref|YP_006519386.1| putative pseudouridine synthase [Mycoplasma wenyonii str.
Massachusetts]
gi|395456115|gb|AFN65057.1| putative pseudouridine synthase [Mycoplasma wenyonii str.
Massachusetts]
Length = 331
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTD----NIEESCATFASR----ALGLTTPLRTTHQID 270
+I+ +VL K AG V ++ ++EE + S + GL P + H+ID
Sbjct: 91 QIVFENSELLVLAKKAGQIVQPSSKLSCYSLEELLQLYLSSKEKVSSGLEYPAKFIHRID 150
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
+ G ++ A+T ++ ++ +++KK+Y A+ P ++R N
Sbjct: 151 HPVSGLLIGAKTATSHNLLSNSLKHRELKKVYRAIVFGSFP----QEFLRLRN------- 199
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
W + + ++ K P ++ + I+ S+ Y+Y ++ L+TGR +Q+RAQLA
Sbjct: 200 --WIVDKHSKVKVLKEPTNESKLA-ILEIKRLKKNSK-YSY-LELNLVTGRKNQIRAQLA 254
Query: 391 ACGAPIVGDSMY 402
G PI+GD Y
Sbjct: 255 DLGFPILGDRKY 266
>gi|28210692|ref|NP_781636.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
gi|28203130|gb|AAO35573.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
Length = 320
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D T G ++ + E ++ IRE+ V K Y AL + G+ + I
Sbjct: 141 NRLDRNTAGIIIFGKNYESLKDLNQMIRERHVDKYYQALVCGKIKDGLYKAH-----IVK 195
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
S Y+ + K++ T I+ CG S +I+L+TGR+HQ+R
Sbjct: 196 DEKSNKSYIHKEPKKNSKEIEMEVKT------IQTCGTYSL-----LEIQLITGRSHQIR 244
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
A L++ G PIVGD Y +L+S N +G
Sbjct: 245 AHLSSLGNPIVGDKKY---GSKKLNSFFYNKYG 274
>gi|383643235|ref|ZP_09955641.1| pseudouridylate synthase [Sphingomonas elodea ATCC 31461]
Length = 228
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 34/197 (17%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+ R++ + +++DKPAG V D E G H++D T G
Sbjct: 11 FKDRVLFIDGEALIIDKPAGLPVDRPRDRSESLEDLLDQLTFGFERLPVPVHRLDRDTSG 70
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA---------PLPVGIMTHYMRPINIAP 326
C++LAR + F + +V K Y+A+ LP+G ++
Sbjct: 71 CLLLARNPKAMKRFGQAFEAGQVTKRYVAILDGVPEQESGEIDLPLGKVS---------- 120
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ EGW + + + W V ++ +P TGRTHQ+R
Sbjct: 121 -TIEEGWRMTHDPKGKSARTRWKRMEVQDGRALV-AFYPE------------TGRTHQIR 166
Query: 387 AQ-LAACGAPIVGDSMY 402
L G PIVGD +Y
Sbjct: 167 VHALEGIGIPIVGDPVY 183
>gi|389576538|ref|ZP_10166566.1| 23S RNA-specific pseudouridylate synthase [Eubacterium
cellulosolvens 6]
gi|389312023|gb|EIM56956.1| 23S RNA-specific pseudouridylate synthase [Eubacterium
cellulosolvens 6]
Length = 326
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 19/206 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGC 276
+I E +++DKPAG ++ + ++ A + + G+ +R +++D T G
Sbjct: 83 VIYEDEDVLIVDKPAGQAIHPAISHPADTLANGLAWYYQQKGIPFVVRCINRLDRDTTGL 142
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL- 335
+++A+ + + + + + + YLA+ LP IN+ P EG +
Sbjct: 143 LIVAKNLVSACVLEQDLLARNIHRTYLAIAEGELPESGT------INL-PIARKEGSLIE 195
Query: 336 -CQLEVMECKKVP-------WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
C E + V +P AT S+ +R+ ++KL TGRTHQ+R
Sbjct: 196 RCVDEDRGDRAVTHFFRKGYYPPATNASPESVSTGSVKNRNGYSLVQLKLETGRTHQIRV 255
Query: 388 QLAACGAPIVGDSMYMPAAIAQLSSP 413
L+ G P++GD++Y P + P
Sbjct: 256 HLSHTGHPLLGDTLYHPDYLRTPEDP 281
>gi|373485937|ref|ZP_09576617.1| pseudouridine synthase, RluA family [Holophaga foetida DSM 6591]
gi|372012775|gb|EHP13337.1| pseudouridine synthase, RluA family [Holophaga foetida DSM 6591]
Length = 293
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++ T G VV AR+ + +RE K+ K+Y AL T
Sbjct: 127 HRLGRTTSGIVVFARSPGARKSLSQALREHKLVKVYRALVT------------------- 167
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS---------RDYAYECKIKL 377
GW ++ P P +G + G P+ R+ A ++ +
Sbjct: 168 -----GWPELDAFTVDAPIGPLPHPLLGTLHGPSPAGKPAVSHVRVLERREDASLVEVHI 222
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
TGR HQ+R +A CG P+VGD +Y P +
Sbjct: 223 ETGRPHQIRIHMAVCGHPLVGDPLYGPGGV 252
>gi|291522040|emb|CBK80333.1| Pseudouridylate synthases, 23S RNA-specific [Coprococcus catus
GD/7]
Length = 234
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D G +V A+TQ+ + ++R K+ K YLA+ T LP + +
Sbjct: 58 HRLDKPVGGVMVYAKTQQAAAKLSEQVRNNKMTKEYLAVLTGNLP-------KKEGRLED 110
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
L+S G + EV++ K A + Y ++ + + L+TGR HQ+R
Sbjct: 111 MLLSNG-KTNRTEVVDAKTSGAKKAVL--EYKVKRTKFEEGQQYSLVNVHLITGRRHQIR 167
Query: 387 AQLAACGAPIVGDSMYMP 404
Q+A GA + GD+ Y P
Sbjct: 168 VQMAHAGAGLWGDTRYNP 185
>gi|302382665|ref|YP_003818488.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193293|gb|ADL00865.1| pseudouridine synthase, RluA family [Brevundimonas subvibrioides
ATCC 15264]
Length = 350
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S +I + + L+KP G +V G T ++ G+ P R H++D T G
Sbjct: 110 KSMVIYEDDLVIALNKPWGLAVQGGTKTTRHVDRLLSAWGEGMERP-RLVHRLDRDTSGV 168
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWY 334
++L + E ++ KK Y A+ P P G ++ +++ I
Sbjct: 169 LLLGKGPEAAKRLAGAFARRQAKKTYWAIVMGLPKPADGQISVHLKKSGI---------- 218
Query: 335 LCQLEVMECKKVPWPDATVGK-AYSI-----EDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
E+M P A + AY++ + W ++ TGRTHQ+RA
Sbjct: 219 -NDYEIMRPADPKDPGAEPAETAYAVISHAAQRASW--------MALRPFTGRTHQLRAH 269
Query: 389 LAACGAPIVGDSMYMPAAIAQLSSP 413
+ A G PI+GD Y A QLS P
Sbjct: 270 MKAIGHPILGDPKYGDDASTQLSGP 294
>gi|255263430|ref|ZP_05342772.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
gi|255105765|gb|EET48439.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
Length = 347
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 26/212 (12%)
Query: 213 DIDWNSRIIAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
D + ++ + H++ L+KP+G + G + + + R H++D
Sbjct: 85 DAEMMRSLVIYKDDHIIALNKPSGIASQGGSKQVRHLDGLAEALKFDYFEKPRLVHRLDR 144
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G ++ART+E +E++ +K+Y A VG + H P + +
Sbjct: 145 DTSGVFIMARTREIAKAMSDAFKERETRKIYWA------AVGGVPH--------PAMGTV 190
Query: 332 GWYLC---------QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TG 380
W L + E M C + T G + D R + I L+ TG
Sbjct: 191 RWGLIKSGGHGRGGENEKMRCIHPREVEHTPGAKRATTDYALLDRLGSRAAWIALVPVTG 250
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
RTHQ+RA +A G PI+GD Y + L
Sbjct: 251 RTHQLRAHMAEMGHPIIGDGKYGGSGQENLGD 282
>gi|310820148|ref|YP_003952506.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|309393220|gb|ADO70679.1| Pseudouridine synthase, RluA family [Stigmatella aurantiaca
DW4/3-1]
Length = 304
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 38/190 (20%)
Query: 228 VVLDKPAGTSV--GGTTDNIEESCATFASR----ALGLTTPLRTTHQIDNCTEGCVVLAR 281
V++DKP G V GG ++ E A A R G+ P H++D T GC++ AR
Sbjct: 87 VIVDKPVGLVVEPGGGAPSVVELLA--AQRPPFDVEGVARP-GVVHRLDRETSGCLMFAR 143
Query: 282 TQEYCSIFHRKIREKKVKKLY--LALTTAPLPVGIMTHYMR----PINIAPRLVSEGWYL 335
T + + ++K+V K Y L L P + Y R P R+ S
Sbjct: 144 TDAAAAALDQAFQQKRVDKRYWTLVLGETPEHERLEGPYGRDPQDPRKFTTRVKSARRAA 203
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
EV E + AT+ +++L TGRTHQ+R QL+ G P
Sbjct: 204 LSFEVRERLR----GATL-------------------LEVRLETGRTHQIRVQLSEAGFP 240
Query: 396 IVGDSMYMPA 405
++GDS+Y P+
Sbjct: 241 VLGDSVYGPS 250
>gi|416113497|ref|ZP_11593354.1| Ribosomal large subunit pseudouridine synthase D [Campylobacter
concisus UNSWCD]
gi|384578543|gb|EIF07807.1| Ribosomal large subunit pseudouridine synthase D [Campylobacter
concisus UNSWCD]
Length = 323
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 24/197 (12%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR------T 265
Y+++++ II + +VL+KP V E + + ++ + + L
Sbjct: 70 YEVNFDIPIIYEDDDLIVLNKPPQIVVHQAPSVKEATLVEWLNKKGFMLSNLNGDVRAGI 129
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +V+A+ + ++ +K + ++YLALT PL ++ +PI
Sbjct: 130 VHRLDKGTSGAIVVAKNNFAHAKLSEQLSDKSMGRIYLALTDLPLKEDVIID--KPIGRN 187
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
P KK DA K+ + S KL TGRTHQ+
Sbjct: 188 PN-------------NRLKKAIVADAKFAKSAFV---NLLSEGGVNLIAAKLFTGRTHQI 231
Query: 386 RAQLAACGAPIVGDSMY 402
R LA+ I+GD +Y
Sbjct: 232 RVHLASINRHILGDDLY 248
>gi|291514879|emb|CBK64089.1| ribosomal large subunit pseudouridine synthase D [Alistipes shahii
WAL 8301]
Length = 228
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLP-VGIMTHYMR 320
L H+ID G VV A+T + + IRE ++ K+Y ALT A P P G + HY+
Sbjct: 55 LGVVHRIDRPVSGAVVFAKTSKALVRLNEMIREGRIHKVYWALTEATPDPESGELRHYIL 114
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA--YSIEDCGWPSRDYAYECKIKLL 378
R + C + K+ AT+G Y++ +++LL
Sbjct: 115 RDGRTNRSRA-----CDAPKGDAKEARLRYATLGAGTNYTL-------------VEVELL 156
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
TGR HQ+RAQL+ G PI GD Y A+ S PG
Sbjct: 157 TGRHHQIRAQLSKIGCPIRGDLKYG----ARRSLPG 188
>gi|295688947|ref|YP_003592640.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430850|gb|ADG10022.1| pseudouridine synthase, RluA family [Caulobacter segnis ATCC 21756]
Length = 332
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 24/233 (10%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV--------LDKPAGTSVGG 240
D + AG+ +RV P ++R +A +S V+ L+KPAG +V G
Sbjct: 55 ADTKLAAGSQIRVPPLPDAPDPADKNKLSARDVAYAKSLVLYEDEEVLALNKPAGLAVQG 114
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
T + ++ G+ P R H++D T G ++L +T + ++K +K
Sbjct: 115 GTKTTKHIDKLLSAWGEGVDRP-RLVHRLDRDTSGVLLLGKTPSAAARLSGAFAKRKAQK 173
Query: 301 LYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYS 358
Y A+ P P G+M +++A R V + + + + P V + +
Sbjct: 174 TYWAIVAGNPHPTEGVME-----LHLAKRGVGDRELVVPAQPKDADAQPAETEFVTISRA 228
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
W ++ TGRTHQ+RA + A G PI+GD Y A LS
Sbjct: 229 GPRVTW--------MALRPHTGRTHQLRAHMKAMGHPILGDPKYGDEKSAPLS 273
>gi|253579159|ref|ZP_04856429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849257|gb|EES77217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 233
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 27/208 (12%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVG----GTTDNIEESCATFASRALGLTTPLRTTHQID 270
D I+ + +V KPAG +V G+ D A + G L H++D
Sbjct: 5 DIRDYILYEDKDILVCHKPAGLAVQNARVGSMDMESLLKNYIAQKVPGKMPYLGIIHRLD 64
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
EG +V A + + R++ K+KK YLA+T + V + +LV
Sbjct: 65 QPVEGVLVFALNPKAAADLSRQMTAGKIKKTYLAVTEGTVKVK-----------SAKLVD 113
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKA---YSIEDCGWPSRDYAYEC------KIKLLTGR 381
W V + KA Y + + W +++ A +C +I L TGR
Sbjct: 114 --WLKKDGRTNSSAVVEGGTSGAKKAILSYEVLET-WKNKEDAQDCGERNLIRIDLDTGR 170
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQ 409
HQ+R Q+A G P+VGD Y P +Q
Sbjct: 171 HHQIRVQMAHAGMPLVGDRKYNPGQNSQ 198
>gi|406874418|gb|EKD24376.1| hypothetical protein ACD_81C00036G0004, partial [uncultured
bacterium]
Length = 246
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 30/195 (15%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATF------ASRALGLTTPLR--TTHQIDNCTEGC 276
E+ V ++KPA V DN + + T+ + +G R H++D T G
Sbjct: 5 ENVVAINKPAHLLVHPYADNKDYALTTWLLKHYPGVKTVGDDPEQRPGIVHRLDKDTSGV 64
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI----APRLVSEG 332
+++ R+ EY + +KK YLAL + T +PI++ R V +G
Sbjct: 65 ILVPRSHEYFRYLKELFQSHGIKKSYLALVWGKVQEKKGT-INKPISLKGGTTKRTVHDG 123
Query: 333 WY----LCQLEVMECKKVPWPDATVGKAYSIEDC-GWPSRDYAYECKIKLLTGRTHQVRA 387
L EV++ PD K Y WP TGRTHQ+R
Sbjct: 124 KMTKEALTDYEVVKRFTFDDPDTETRKIYDFTLVRAWPK------------TGRTHQIRV 171
Query: 388 QLAACGAPIVGDSMY 402
LA+ G IVGD+MY
Sbjct: 172 HLASIGFAIVGDTMY 186
>gi|261493419|ref|ZP_05989944.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261310913|gb|EEY12091.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 217
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 35/182 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E +R L + + H++D T G ++LA +E +
Sbjct: 15 IIINKPEGLSV--HKDEAEIGLTELVARQLNVKQ-VWLVHRLDKITSGLLILALNKEAAA 71
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE-------GWYLCQLEV 340
F+ + K+ K Y AL+ +P R+V + W LC +
Sbjct: 72 RFYHLFEQHKIYKTYWALSDK-----------KPKKKQGRIVGDMQKSRNGAWKLCYSKE 120
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
P T ++S+ED R + + K TG+THQ+R + + G+PI+GD
Sbjct: 121 N-------PAVTQFISHSVEDS---LRHFILQPK----TGKTHQLRVAMKSLGSPILGDK 166
Query: 401 MY 402
+Y
Sbjct: 167 LY 168
>gi|282600817|ref|ZP_06257758.1| ribosomal large subunit pseudouridine synthase [Subdoligranulum
variabile DSM 15176]
gi|282571024|gb|EFB76559.1| pseudouridine synthase, RluA family [Subdoligranulum variabile DSM
15176]
Length = 302
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 225 ESHVVLDKPAGTSVGG-TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
E +V++KPAG V G D + + T + A G H++D T G V+LA+ Q
Sbjct: 82 EDILVVNKPAGIEVDGPAADTLLKRVQTTLAAA-GKAGHAVLCHRLDTGTSGLVLLAKNQ 140
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ I+ + ++K YL +T P P + H + L E
Sbjct: 141 ATELFLTQAIKARTIEKRYLCVTFGRPQPPAALMH--------------DYLLKDAERGV 186
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K + P + + + + S A +++L+TGRTHQ+RA LA G PI+GDS Y
Sbjct: 187 VKIITSPASGAKEVITGYETLAVSGRLAL-LEVELVTGRTHQIRAHLAHIGCPILGDSKY 245
>gi|332290332|ref|YP_004421184.1| tRNA pseudouridine synthase C [Gallibacterium anatis UMN179]
gi|330433228|gb|AEC18287.1| tRNA pseudouridine synthase C [Gallibacterium anatis UMN179]
Length = 232
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 33/190 (17%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A TE+ VV++KP G SV D+ E+ T + LG+ + H++D T G ++
Sbjct: 12 QIVAQTENFVVINKPCGVSV--HKDDNEQGLTTQLAEQLGVEQ-VWLVHRLDKSTSGLLL 68
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A ++ + + +V+K+YLAL T +P + L +
Sbjct: 69 CALNRQAAAELSAQFAAHQVQKIYLALATG-----------KP--------KKKQGLIKG 109
Query: 339 EVMECKKVPWP------DATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+++ ++ W + + + YSI C R + +K TG+THQ+R + +
Sbjct: 110 DMIRSRRAMWKLSPSCSNPAITRFYSI-SCESGLRLFV----LKPQTGKTHQLRVAMKSL 164
Query: 393 GAPIVGDSMY 402
G+PI+GD +Y
Sbjct: 165 GSPILGDPLY 174
>gi|441522395|ref|ZP_21004042.1| putative pseudouridine synthase [Gordonia sihwensis NBRC 108236]
gi|441458018|dbj|GAC62003.1| putative pseudouridine synthase [Gordonia sihwensis NBRC 108236]
Length = 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
PR + ++ I+ + + VV+DKP + ++ ++ R LG + + H+
Sbjct: 68 PREPPVPFDMPILHLDDDLVVVDKPHFLATMPRGAHVAQTALVRLRRELG-SDDVAPAHR 126
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP--LPVGIMTHYMRPINIAP 326
+D T G ++ R +E + + +++V+K Y A+ A L G+ I
Sbjct: 127 LDRLTAGVLLFTRRREVRAAYQELFAQRRVRKEYRAIAPADDALAGGV--------RIEN 178
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR--DYAYECKIKLLTGRTHQ 384
R+V L + V+E G+ +I D +R D E ++ TGRTHQ
Sbjct: 179 RIVKTAGDL-RARVVE-----------GEVNAISDIELSTRLGDGLAEYRLAPHTGRTHQ 226
Query: 385 VRAQLAACGAPIVGDSMYMPAAIAQLSS 412
+R +A G PIVGD +Y P A L++
Sbjct: 227 LRMHMAQLGVPIVGDPLY-PEVDADLAA 253
>gi|398810211|ref|ZP_10569041.1| 23S RNA-specific pseudouridylate synthase [Variovorax sp. CF313]
gi|398083902|gb|EJL74606.1| 23S RNA-specific pseudouridylate synthase [Variovorax sp. CF313]
Length = 218
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V DKPAG ++ C ++RA+ H++D T G VV+AR
Sbjct: 17 LVFDKPAGLLCVPGRGEDKQDC--LSARAMRQWPDALIVHRLDMGTSGLVVMARGIPMQR 74
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM-ECKKV 346
E++V K Y A+ +PV E W L +M + +
Sbjct: 75 ALSAAFAERRVHKRYEAVVDGAMPV-----------------REDWSLIDAPLMADWPRR 117
Query: 347 PW--------PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
P P T KA S+ P A ++ LTGR+HQ+R L + G PI+G
Sbjct: 118 PLQKIDPAGKPSVTRWKAVSL----LPGEPAATHVLLEPLTGRSHQLRVHLLSIGHPILG 173
Query: 399 DSMYMPAAIAQLSSPGL 415
D++Y AA+ Q +P L
Sbjct: 174 DALYGDAAL-QARAPRL 189
>gi|344923325|ref|ZP_08776786.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 233
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 27/181 (14%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP G +V G N+E+ F GL H++D T GC+VL R +
Sbjct: 20 LVLNKPKGYAVHKGKGRKPNLEDY---FYQLQFGLPNLPGLGHRLDASTSGCLVLGRHPK 76
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+KK Y A+ T LP ++G L M +
Sbjct: 77 ALRRLGILFSGGHIKKTYWAVVTGKLPE-----------------AQGIIDLPLAKMNDR 119
Query: 345 KVPW---PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
K W DA KA + + Y++ ++ +TGRTHQ+R L A G PIVGD +
Sbjct: 120 KSNWWMKVDANGQKAVTQYKVLGETAQYSF-VELTPITGRTHQLRVHLEALGCPIVGDPV 178
Query: 402 Y 402
Y
Sbjct: 179 Y 179
>gi|16126223|ref|NP_420787.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|221234996|ref|YP_002517432.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13423445|gb|AAK23955.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|220964168|gb|ACL95524.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 331
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S ++ E + L+KPAG +V G T + ++ G+ P R H++D T G
Sbjct: 90 KSLVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRP-RLVHRLDRDTSGV 148
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWY 334
++L +T + ++K +K Y A+ P P G+M +++A R V +
Sbjct: 149 LLLGKTPSAAARLSGAFAKRKAQKTYWAIVAGNPHPTEGVME-----LHLAKRGVGDREL 203
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ + + P V + + W ++ TGRTHQ+RA + A G
Sbjct: 204 VVPAQPKDPDAQPAETEFVTISRAGPRVTW--------MALRPHTGRTHQLRAHMKAMGH 255
Query: 395 PIVGDSMYMPAAIAQLS 411
PI+GD Y A LS
Sbjct: 256 PILGDPKYGDEKSAPLS 272
>gi|332284960|ref|YP_004416871.1| ribosomal large subunit pseudouridine synthase C [Pusillimonas sp.
T7-7]
gi|330428913|gb|AEC20247.1| ribosomal large subunit pseudouridine synthase C [Pusillimonas sp.
T7-7]
Length = 322
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 39/240 (16%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRI-------IAVTESHVVLDKPAGTSVGGTT 242
D +E G +RV P R PR D R+ + E+ VV++KPAG +V G
Sbjct: 68 DYRLELGDTVRVP--PLRLPRP---DEPRRVPPAVFPVVFEDEAMVVVNKPAGVAVHGG- 121
Query: 243 DNIEESCATFAS----RALGLTTP-LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKK 297
S +F RA P L H++D T G +++A+ ++ H +RE
Sbjct: 122 -----SGVSFGVIEQLRAARPDAPFLELAHRLDRETSGLLIIAKKRKALLGLHDMMREGG 176
Query: 298 VKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAY 357
+K Y AL V H +P+ L + G +++ KV T+ K Y
Sbjct: 177 GRKHYQALVVGDW-VNDKQHLRQPL--LKWLTASGERRVKVDAQ--GKVAHTIITLQKRY 231
Query: 358 SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
Y+ +L TGRTHQ+R LA+CG PIVGD Y + A + GLN
Sbjct: 232 G---------RYSL-LGAELRTGRTHQIRVHLASCGYPIVGDDKYGSDEVRAYFAGLGLN 281
>gi|407641952|ref|YP_006805711.1| putative RNA pseudouridylate synthase [Nocardia brasiliensis ATCC
700358]
gi|407304836|gb|AFT98736.1| putative RNA pseudouridylate synthase [Nocardia brasiliensis ATCC
700358]
Length = 247
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 42/216 (19%)
Query: 214 IDWNSR----IIAVTESHVVLDKPAGTSVGG---TTDNIEESCATFASRALGLTTPLRTT 266
+DW+ ++A ++ + L KPAG SV G TD +E + A + L
Sbjct: 1 MDWSELRTRCLVAEDDAILALHKPAGISVTGERHDTDLVELAAAAGET--------LYPV 52
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-----------PLPVGIM 315
H+ID T G ++ A+ R+ ++ K YLA+ + PL VG
Sbjct: 53 HRIDKVTSGLILFAKELGAHGQLTRQFNKQTADKAYLAIVESAGLPETGTLELPLSVG-- 110
Query: 316 THYMRPINIAPR----LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY 371
R APR V + W++ ++++ K P + + R
Sbjct: 111 -RKNRVRIAAPRECIQRVGDRWFVDDADLLDTKSYP---------STTQFTTVLRRAERT 160
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
++ +TGR HQ+R QLA G PIVGD ++ + I
Sbjct: 161 VLALRPITGRRHQIRVQLAWIGHPIVGDPLFDKSGI 196
>gi|406907642|gb|EKD48415.1| hypothetical protein ACD_64C00330G0003 [uncultured bacterium]
Length = 320
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS---------RALGLTTPLRTTHQIDNCTEGCVV 278
++++KPAG V T+ ++ + AT +G H++D T G ++
Sbjct: 103 LIINKPAGLLVHPTS--MKSTAATLVDWLLMNYASIEDVGYVDRPGIVHRLDKDTSGLLI 160
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+ RT IF R++K+ K Y A+ P G++T PI P L ++
Sbjct: 161 VPRTNYAHGIFADLFRDRKMSKTYYAIVQGHPEKQGVIT---LPIGRDPILKTK------ 211
Query: 338 LEVMECKKVPWPDATVGKA---YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
M K+ P V A Y + + D A ++K +TGRTHQ+R A G
Sbjct: 212 ---MTSKQFPERSMKVRDATTHYKVLEYF----DDAALIEVKPVTGRTHQIRVHFVAIGH 264
Query: 395 PIVGDSMY 402
P++GD++Y
Sbjct: 265 PLIGDAVY 272
>gi|335051001|ref|ZP_08543941.1| RNA pseudouridine synthase [Propionibacterium sp. 409-HC1]
gi|342213619|ref|ZP_08706344.1| RNA pseudouridine synthase [Propionibacterium sp. CC003-HC2]
gi|333768198|gb|EGL45398.1| RNA pseudouridine synthase [Propionibacterium sp. 409-HC1]
gi|340769163|gb|EGR91688.1| RNA pseudouridine synthase [Propionibacterium sp. CC003-HC2]
Length = 322
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 64 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 117
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 118 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 176
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VK+ L P G +T + R++ E +++ ++VP
Sbjct: 177 FERR---EVVKRYRLVAPVVHNPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 227
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 228 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 277
>gi|158298572|ref|XP_553504.3| AGAP009693-PA [Anopheles gambiae str. PEST]
gi|157013948|gb|EAL39149.3| AGAP009693-PA [Anopheles gambiae str. PEST]
Length = 494
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 22/211 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + + VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 144 IVHMDDDIVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKN-LRTIHRLDRLTSGLLLF 202
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL- 338
R+ + +IR ++V+K Y+ P GI+ PI + VS +C++
Sbjct: 203 GRSPKKARQMEHQIRNRQVQKEYICRVEGEFPDGII-ECKEPIEV----VSYKIGVCKVS 257
Query: 339 -EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ EC + + G+ CK LTGR HQ+R L G P+V
Sbjct: 258 PKGKEC------------TTTFQKLGFNGNSSVVLCKP--LTGRMHQIRVHLQYLGYPVV 303
Query: 398 GDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y G + GK ++ D
Sbjct: 304 NDPLYNHDVFGPAKGRGGDIGGKSDEQLVKD 334
>gi|427429389|ref|ZP_18919424.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425880582|gb|EKV29278.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 325
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 39/244 (15%)
Query: 190 DQIVEAGTYLRV-------HVHPKRFPRCYDIDW---NSRIIAVTESHVVLDKPAGTSVG 239
+Q +EAG +RV + P PR D + +I + + +VL+KP G +
Sbjct: 53 NQRLEAGQAVRVPPLGEQPDLPPDDEPRVSQADAAMIRACVIHMDDDVIVLNKPPGLATQ 112
Query: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
G T + R H++D T G +V+ RT + S+ + + +
Sbjct: 113 GGTGTNRHIDGMLEALRYDYPDKPRLVHRLDRDTSGVLVVGRTAKAASVLAAAFKSRDAR 172
Query: 300 KLYLALTT-APLPVGIMTHYMRPINIAP-----RL-VSEGWYLCQLEVMECKKVPWPDAT 352
K+Y A+ AP P P+ AP R+ V E W + V +A
Sbjct: 173 KVYWAVVVGAPKPS--EGRLSAPLAKAPGKAGERMEVDEDWGKPAVTVFRTV-----EAV 225
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
GKA +E ++ LTGRTHQ+R AA G PI+GD Y A A LS
Sbjct: 226 AGKAAWLE--------------MEPLTGRTHQLRVHAAAMGTPILGDGKYG-GAEAHLSG 270
Query: 413 PGLN 416
G++
Sbjct: 271 RGVS 274
>gi|384228339|ref|YP_005620074.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ua (Uroleucon ambrosiae)]
gi|345539272|gb|AEO08139.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ua (Uroleucon ambrosiae)]
Length = 314
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 36/185 (19%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++++KP+G +V GG+ N + + L T L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGSGCNF--GVIEYFRKLRPLNTFLELVHRIDRETSGILMLAKKRISL 159
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
H+++RE K+KK Y AL P I + +SE Q + +
Sbjct: 160 VSLHKQLRENKIKKEYTALVHGLWPRHI------------KKISEPLLKIQFKYNQ---- 203
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECK---------IKLLTGRTHQVRAQLAACGAPIV 397
K I G PS Y Y K I TGRTHQ+R G PI
Sbjct: 204 --------KKVFIHKNGKPSETYFYIKKQFSTSTLLSIFPKTGRTHQIRVHALHAGHPIF 255
Query: 398 GDSMY 402
D Y
Sbjct: 256 FDQRY 260
>gi|220904744|ref|YP_002480056.1| pseudouridine synthase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869043|gb|ACL49378.1| pseudouridine synthase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 360
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 230 LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIF 289
DKPAG V T + + + G++ H++D T G +++A +
Sbjct: 126 FDKPAGLPVHPGTGHEDSLTTRLSCHFAGVSFMPTPVHRLDRGTSGIILVAASYAALDET 185
Query: 290 HRKIREKKVKKLYLALTTAPLP---VGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
R +R + K Y+A P ++ H++R + +G+ E + K
Sbjct: 186 QRALRANAMHKEYVAWVAGRWPHTQTCLVRHFLR------KEAVDGF-----ERVRPVKA 234
Query: 347 PWPDAT----VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
PDA + +A SI D A +++LLTGRTHQ+R QL++ G P++GD+ Y
Sbjct: 235 DAPDAKEALCLVRALSIAD-------RASLVQVRLLTGRTHQIRVQLSSLGHPVLGDTKY 287
>gi|254459621|ref|ZP_05073037.1| pseudouridine synthase, RluA family [Rhodobacterales bacterium
HTCC2083]
gi|206676210|gb|EDZ40697.1| pseudouridine synthase, RluA family [Rhodobacteraceae bacterium
HTCC2083]
Length = 347
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 23/225 (10%)
Query: 193 VEAGTYLRV----------HVHPKRFPRCYDIDWNSRIIAVTESHVV-LDKPAGTSVGGT 241
VE G LR+ H P + D + + + HV+ L+KPAG V G
Sbjct: 56 VETGMQLRIPPLPDSAAPKHAAPSKVS-AADTKFIRSCVIYKDDHVIALNKPAGLPVQGG 114
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
T + + + H++D T G ++L RT+ + R + +K+
Sbjct: 115 TGHARHVDGLLDALMYDFEERPKLVHRLDKDTSGVLILGRTRRATADLTASFRHRNTRKI 174
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIED 361
Y A A +P M + AP + G + E M C D T G ++ D
Sbjct: 175 YWA-AIAGVPNPRMGTIKYGLMKAPGHGARG----EGEKMICIHPREVDQTEGAKRALTD 229
Query: 362 CGWPSRDYAYE----CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ + A + C + +TGRTHQ+RA ++ G P+VGD Y
Sbjct: 230 --YAVLETAGQRTSWCALIPITGRTHQLRAHMSEMGHPVVGDGKY 272
>gi|218442079|ref|YP_002380408.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218174807|gb|ACK73540.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7424]
Length = 308
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 40/198 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+ KPAG + +E + + TP H++ T G V+LAR+
Sbjct: 95 LVVAKPAGLPILPGGGFVEHTLLGQLKQHYPEDTPF-PIHRLGRGTSGLVLLARSSFARG 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
++R +++ K+Y AL +P +T + IN K+P
Sbjct: 154 FLSEQMRSRQISKIYRAL----IPKSDLTDHFT-IN-----------------QPIGKIP 191
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECK------------IKLLTGRTHQVRAQLAACGAP 395
P +G + G +D EC+ +K+LTGR HQ+R LAA G P
Sbjct: 192 HP--VLGYIFGATPNG---KDALSECRVLKRTSETTLVEVKILTGRPHQIRIHLAAIGYP 246
Query: 396 IVGDSMYMPAAIAQLSSP 413
++GD +Y I ++ +P
Sbjct: 247 LIGDPLYTMGGIPKIQTP 264
>gi|197104730|ref|YP_002130107.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
gi|196478150|gb|ACG77678.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
Length = 243
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 228 VVLDKPAGTSVGG---TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ L+KPAG S G + ++E FA G P R H++D T G ++ A+T+
Sbjct: 29 LALNKPAGLSSQGGRGQVNTLDELLWAFAKP--GKARP-RLIHRLDRDTSGVILTAKTKP 85
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ + ++ K YLA+ T PV RP+ R V EG + V E
Sbjct: 86 AAGFLGKALMKRAFSKTYLAIVTPGAPVPAKGVIDRPL----RRVEEGRE-AYMRVCEPD 140
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P +A + ++++ + A ++ TGR HQ+R LAA G PI GD+ Y
Sbjct: 141 H-PDAEAAASRYRTLKEG-----EGAALVELSPETGRMHQLRVHLAAVGRPIAGDARY 192
>gi|268316750|ref|YP_003290469.1| pseudouridine synthase [Rhodothermus marinus DSM 4252]
gi|262334284|gb|ACY48081.1| pseudouridine synthase [Rhodothermus marinus DSM 4252]
Length = 242
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 36/187 (19%)
Query: 228 VVLDKPAGTSVGGTTDN-----------IEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+V++KP+G G I+E + LGL H++D G
Sbjct: 17 LVINKPSGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLV------HRLDAPVSGV 70
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEGWYL 335
+VLART + + ++ RE+ V+K+YLAL L G ++ P RLV E
Sbjct: 71 MVLARTSKAAARLMQQFRERTVEKVYLALVEGELEGSGTWEDFIAPARDHMRLVPE---- 126
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D GK + +R+ ++ TGR HQ+R QLA G P
Sbjct: 127 --------------DHPFGKRAVLHWQALMTRNGLTLMRLVPETGRKHQIRVQLAFRGYP 172
Query: 396 IVGDSMY 402
I+GD Y
Sbjct: 173 ILGDRRY 179
>gi|402311645|ref|ZP_10830582.1| RNA pseudouridine synthase [Lachnospiraceae bacterium ICM7]
gi|400371293|gb|EJP24254.1| RNA pseudouridine synthase [Lachnospiraceae bacterium ICM7]
Length = 216
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N +I+ + +V KP G S ++++ EE + + +G + H++D G
Sbjct: 1 MNLKILYEDKDVIVTVKPRGIS-SQSSNSFEEDMVSLLKKHMGKDAYVGVIHRLDKPVYG 59
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPI-NIAPRLVSEG 332
+V + ++ I ++R+K ++K Y AL G + +++ + N ++V +
Sbjct: 60 IMVYGKNKKATEILSNELRKKNIEKTYEALVDGFPESDEGELIDFIKKLDNNVSKVVEKS 119
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ V++ K V ++Y +D Y +I L+TGR HQ+R Q A+
Sbjct: 120 TRGAKEAVLKYK--------VLESYKKDDR------YITRLRINLITGRHHQIRLQCASH 165
Query: 393 GAPIVGDSMY 402
G P+ GD Y
Sbjct: 166 GFPLYGDHKY 175
>gi|198461946|ref|XP_001352285.2| GA19422 [Drosophila pseudoobscura pseudoobscura]
gi|198142379|gb|EAL42449.2| GA19422 [Drosophila pseudoobscura pseudoobscura]
Length = 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 22/220 (10%)
Query: 223 VTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+ E VV++KPA V + +++ L LRT H++D T G ++ RT
Sbjct: 1 MDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKSHNLKN-LRTIHRLDRLTSGLLIFGRT 59
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EV 340
+ ++IR ++V+K Y+ P GI+ N ++VS +C++
Sbjct: 60 SKKARELEQQIRNRQVQKEYVCRVEGRFPDGIIE-----CNEPIQVVSYKIGVCRVSPNG 114
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
+C+ T + + DC K LTGR HQ+R L G PIV D
Sbjct: 115 KDCR------TTFRRISEVGDCSI--------VLCKPLTGRMHQIRVHLQYLGYPIVNDP 160
Query: 401 MYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWIS 440
+Y G + GK ++ ++ K W+
Sbjct: 161 LYNHEVFGPSKGRGGDIGGKSDEQLINNLIKIHNAENWLG 200
>gi|157116527|ref|XP_001658535.1| ribosomal pseudouridine synthase [Aedes aegypti]
gi|108883445|gb|EAT47670.1| AAEL001242-PA [Aedes aegypti]
Length = 516
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 22/211 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + + VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 144 IVHMDDDIVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKN-LRTIHRLDRLTSGLLLF 202
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL- 338
R+ + +IR ++V+K Y+ P GI+ PI + VS +C++
Sbjct: 203 GRSPKKARQMEHQIRNRQVQKEYICRVEGEFPDGII-ECKEPIEV----VSYKIGVCKVS 257
Query: 339 -EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ EC + + G+ CK LTGR HQ+R L G P+V
Sbjct: 258 PKGKEC------------TTTFQKLGYNGTSSVVLCKP--LTGRMHQIRVHLQYLGYPVV 303
Query: 398 GDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y G + GK ++ D
Sbjct: 304 NDPLYNHEVFGPAKGRGGDIGGKSDEQLVKD 334
>gi|354605349|ref|ZP_09023338.1| hypothetical protein HMPREF9450_02253 [Alistipes indistinctus YIT
12060]
gi|353347928|gb|EHB92204.1| hypothetical protein HMPREF9450_02253 [Alistipes indistinctus YIT
12060]
Length = 235
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSV--GGTTD-NIEESCATF--ASRALGLTTPLRTTHQIDNC 272
RI+ +V++K AG V T D +E+ F A A L H+ID
Sbjct: 5 QRILYEDNHLLVVNKRAGELVQPDPTGDPALEDEIKAFLGAREAKPGNVFLGVVHRIDRP 64
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
G V+ A+T + + + I+ +++ K Y A+T PL T + LV +G
Sbjct: 65 VSGAVIFAKTGKALTRLNEMIKVREIDKYYWAITEKPLQPEAGT-------LVGHLVRDG 117
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ + P P +A S++Y + +++LLTGR HQ+RAQL+A
Sbjct: 118 ------RTNKSRIYPKPVPGSKEARLNYKLLGGSKNY-FLVEVELLTGRHHQIRAQLSAA 170
Query: 393 GAPIVGDSMY 402
G+PI GD Y
Sbjct: 171 GSPIRGDLKY 180
>gi|149195656|ref|ZP_01872713.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155]
gi|149141118|gb|EDM29514.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155]
Length = 231
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I E ++++K G + +++ EE G P+ H++D T G +++
Sbjct: 7 VIEEFEDFILVNKKPGENF--HSESGEEGLFHQLKEHYGELYPV---HRLDKVTSGLLLM 61
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
AR + C ++ +K++K YLA++ P + + + R GW LC
Sbjct: 62 ARNLQSCQELNQLFEAQKIEKFYLAISDRK-PKKKQGWVIGDMEKSRR---GGWKLC--- 114
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
E +K P T +YSI G R Y ++ TG+THQ+R + A GAPI GD
Sbjct: 115 --ESRKNP--AVTQFFSYSI---GQGKRVYL----LRPRTGKTHQLRVAMKAIGAPICGD 163
Query: 400 SMYMPAAI 407
Y P I
Sbjct: 164 PNYYPGLI 171
>gi|365853934|ref|ZP_09394190.1| pseudouridine synthase, RluA family [Lactobacillus parafarraginis
F0439]
gi|363711707|gb|EHL95429.1| pseudouridine synthase, RluA family [Lactobacillus parafarraginis
F0439]
Length = 291
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 42/236 (17%)
Query: 219 RIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
++I ++ +++DKPAG +V TD + +A ++D T
Sbjct: 78 KVIYEDDNWLIVDKPAGLTVVPGPANRTDTLVNRVKGHLIKAHAKNVVPHVITRLDRFTS 137
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAP----RL 328
G V++A+ + S+ + + K++ K YLA+ + G++ H +PI P ++
Sbjct: 138 GLVLIAKHRLANSLANELLAAKQLHKRYLAVVSG---TGLLAHGRIQKPIAKDPDGFGQV 194
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
++E E K PD T+ ++ L TGRTHQ+R
Sbjct: 195 IAESGRAADTEY--WVKQALPDRTL-------------------VEVALHTGRTHQIRVH 233
Query: 389 LAACGAPIVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYASDDDKEMAVI 436
AA G P++GD +Y +S L +PF K + SD +M I
Sbjct: 234 FAAIGHPLLGDELYHGPMDRGISRQALHAAKLDFDDPFSKTHLSFQSDLPGDMTAI 289
>gi|195578233|ref|XP_002078970.1| GD22253 [Drosophila simulans]
gi|194190979|gb|EDX04555.1| GD22253 [Drosophila simulans]
Length = 555
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 193 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 251
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
R+ + ++IR ++V+K Y+ P GI+ PI +
Sbjct: 252 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV-ECKEPIEVV-----------SY 299
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
++ CK P + G S CK LTGR HQ+R L G PI+
Sbjct: 300 KIGVCKVSPKGKDCTTTFQKLSQNGTTS---VVLCKP--LTGRMHQIRVHLQYLGYPILN 354
Query: 399 DSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y L + GK +E D
Sbjct: 355 DPLYNHEVFGPLKGRSGDIGGKSDEELIRD 384
>gi|337282859|ref|YP_004622330.1| ribosomal large subunit pseudouridine synthase [Streptococcus
parasanguinis ATCC 15912]
gi|335370452|gb|AEH56402.1| ribosomal large subunit pseudouridine synthase [Streptococcus
parasanguinis ATCC 15912]
Length = 287
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 37/187 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E + S +G T H++D T G ++ A+
Sbjct: 91 IIVNKPEGMKTHAN-EPTEIALLNHVSSYVGSTC--YVVHRLDKETSGAILFAKNPFILP 147
Query: 288 IFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + +K +++ Y AL L +G H R + PR +G Y +
Sbjct: 148 ILNRILEDKNIQREYWALIQGSLAQKTIVYKDKIGRDRHDRRKRLVDPR---KGQY-AET 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+V + KK+ R+ +C++K TGRTHQ+R L+ G PIVG
Sbjct: 204 QVTQLKKI-------------------GRNSLVKCQLK--TGRTHQIRVHLSHHGHPIVG 242
Query: 399 DSMYMPA 405
D +Y PA
Sbjct: 243 DPLYNPA 249
>gi|401406047|ref|XP_003882473.1| RNA pseudouridylate synthase domain-containing protein [Neospora
caninum Liverpool]
gi|325116888|emb|CBZ52441.1| RNA pseudouridylate synthase domain-containing protein [Neospora
caninum Liverpool]
Length = 2211
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT----HYMRPI 322
H++D T G +++A++ + ++ + KK+YLAL +P+ T H +RP
Sbjct: 1964 HRLDTPTSGPLLVAKSYAGLAFLRAQLASWRPKKVYLALVFGAVPLRRETVRLVHPLRPT 2023
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAY--SIEDCGWPSRDYAYECKIKLLTG 380
+ Q E + DA + + ++ + RD+ C+++ +TG
Sbjct: 2024 ----------FEARQAGKKEMEVASTIDAKIALLFLTALAQYSYAGRDFTL-CRVEPVTG 2072
Query: 381 RTHQVRAQLAACGAPIVGDSMYM 403
RTHQ+RAQLA G PIV D +Y+
Sbjct: 2073 RTHQIRAQLAHIGHPIVADPIYV 2095
>gi|68488811|ref|XP_711752.1| hypothetical protein CaO19.10304 [Candida albicans SC5314]
gi|46433075|gb|EAK92530.1| hypothetical protein CaO19.10304 [Candida albicans SC5314]
Length = 402
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYFNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQYTEKTYLARVSGKFPEGIH-RYRCPI----FA 213
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V+ YL + E +P T+ E + + K +TG+ HQ+R
Sbjct: 214 VNMNGYLMSGNMEE---LPTDSTTI-----FERIKYNASLDQSLVKCVPITGKFHQIRVH 265
Query: 389 LAACGAPIVGDSMYMP 404
L G PIV DS Y P
Sbjct: 266 LRNLGFPIVNDSFYQP 281
>gi|417918047|ref|ZP_12561600.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
gi|342829038|gb|EGU63399.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
Length = 287
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 37/186 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E + S +G T H++D T G ++ A+
Sbjct: 91 IIVNKPEGMKTHAN-EPTEIALLNHVSSYVGSTC--YVVHRLDKETSGAILFAKNPFILP 147
Query: 288 IFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + +KK+++ Y AL L +G H R + PR +G Y +
Sbjct: 148 ILNRILEDKKIQREYWALIQGSLAQKALIYKDKIGRDRHDRRKRLVDPR---KGQY-AET 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+V + KK+ R+ +C++K TGRTHQ+R L+ G PIVG
Sbjct: 204 QVTQLKKI-------------------GRNSLVKCQLK--TGRTHQIRVHLSHHGHPIVG 242
Query: 399 DSMYMP 404
D +Y P
Sbjct: 243 DPLYNP 248
>gi|91789312|ref|YP_550264.1| ribosomal large subunit pseudouridine synthase A [Polaromonas sp.
JS666]
gi|91698537|gb|ABE45366.1| ribosomal large subunit pseudouridine synthase A [Polaromonas sp.
JS666]
Length = 223
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ + +VL KP+G +V G ++ ++ +T R H++D T G VV
Sbjct: 13 IVHTDDLFLVLRKPSGLLAVPGRGEDKQDCLST---RVQQQHPEALVVHRLDMGTSGLVV 69
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+AR++E + E+ V K Y+A+ G+M AP +GW L
Sbjct: 70 MARSREAQRALSKAFAERAVHKRYVAVVD-----GLMA--------APADSPDGWGRIDL 116
Query: 339 EVMECKKVPWP-------DATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQ 388
++ V W DA GK S+ D LL TGR+HQ+R
Sbjct: 117 PII----VDWARRPLRVIDAERGKP-SVTRWQIQHHDRQRNTTRLLLEPVTGRSHQLRVH 171
Query: 389 LAACGAPIVGDSMYMPAAIA 408
L A G PIVGD++Y A+A
Sbjct: 172 LQAIGHPIVGDALYATPAVA 191
>gi|390950506|ref|YP_006414265.1| RluA family pseudouridine synthase [Thiocystis violascens DSM 198]
gi|390427075|gb|AFL74140.1| pseudouridine synthase, RluA family [Thiocystis violascens DSM 198]
Length = 348
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 18/201 (8%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
P R P + ++ + +V+DKP G +V G + + ES R L
Sbjct: 107 PGRAPETQLARLDRSVLYEDDRLLVIDKPPGLAVHGGSGLSYGLIESL-----RQLRPGH 161
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
L H++D T GC+V+++ + H IRE K+ K YLAL L +
Sbjct: 162 ELELVHRLDRETSGCLVISKRRSALRELHALIREGKMDKRYLALIVGEL---AQPEMLVD 218
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ ++ G L +++ +E K P T+ + G + L+TGR
Sbjct: 219 APLKKNVLRGGERLVRVDPIEGK----PARTLFRRLRRFALGE---QRVTLVEAHLITGR 271
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R A G P+ GD Y
Sbjct: 272 THQIRVHAAHLGTPLAGDPKY 292
>gi|238878813|gb|EEQ42451.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 402
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNIDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQYTEKTYLARVSGKFPEGIH-RYRCPI----FA 213
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V+ YL + E +P T+ E + + K +TG+ HQ+R
Sbjct: 214 VNMNGYLMSGNMEE---LPTDSTTI-----FERIKYNASLDESLIKCVSITGKFHQIRIH 265
Query: 389 LAACGAPIVGDSMYMP 404
L G PIV DS Y P
Sbjct: 266 LRNLGFPIVNDSFYQP 281
>gi|387880455|ref|YP_006310758.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis FW213]
gi|386793903|gb|AFJ26938.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis FW213]
Length = 334
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E ++++KP G + E + S +G T H++D T G ++ A+
Sbjct: 135 EHVIIVNKPEGMKTHAN-EPTEIALLNHVSSYVGSTC--YVVHRLDKETSGAILFAKNPF 191
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLVSEGWYL 335
I +R + +K +++ Y AL L +G H R + PR +G Y
Sbjct: 192 ILPILNRILEDKNIQREYWALIQGSLAQKTIVYKDKIGRDRHDRRKRLVDPR---KGQY- 247
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ +V + KK+ R+ +C++K TGRTHQ+R L+ G P
Sbjct: 248 AETQVTQLKKI-------------------GRNSLVKCQLK--TGRTHQIRVHLSHHGHP 286
Query: 396 IVGDSMYMPA 405
I+GD +Y PA
Sbjct: 287 IIGDPLYNPA 296
>gi|322390416|ref|ZP_08063937.1| ribosomal large subunit pseudouridine synthase [Streptococcus
parasanguinis ATCC 903]
gi|321142874|gb|EFX38331.1| ribosomal large subunit pseudouridine synthase [Streptococcus
parasanguinis ATCC 903]
Length = 287
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 37/187 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E + S +G T H++D T G ++ A+
Sbjct: 91 IIVNKPEGMKTHAN-EPTEIALLNHVSSYVGSTC--YVVHRLDKETSGAILFAKNPFILP 147
Query: 288 IFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + +K +++ Y AL L +G H R + PR +G Y +
Sbjct: 148 ILNRILEDKNIQREYWALIQGSLAQRTIVYKDKIGRDRHDRRKRLVDPR---KGQY-AET 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+V + KK+ R+ +C++K TGRTHQ+R L+ G PIVG
Sbjct: 204 QVTQLKKI-------------------GRNSLVKCQLK--TGRTHQIRVHLSHHGHPIVG 242
Query: 399 DSMYMPA 405
D +Y PA
Sbjct: 243 DPLYNPA 249
>gi|68488860|ref|XP_711730.1| hypothetical protein CaO19.2788 [Candida albicans SC5314]
gi|46433052|gb|EAK92508.1| hypothetical protein CaO19.2788 [Candida albicans SC5314]
Length = 402
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGIH-RYRCPI----FA 213
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V+ YL + E +P T+ E + + K +TG+ HQ+R
Sbjct: 214 VNMNGYLMSGNMEE---LPTDSTTI-----FERIKYNASLDQSLVKCVPITGKFHQIRIH 265
Query: 389 LAACGAPIVGDSMYMP 404
L G PIV DS Y P
Sbjct: 266 LRNLGFPIVNDSFYQP 281
>gi|304312939|ref|YP_003812537.1| ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
gi|301798672|emb|CBL46904.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
Length = 311
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 36/193 (18%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ E +VL+KPAG +V GG+ ++ A A R L + L H++D T GC++
Sbjct: 88 ILYEDEGLIVLNKPAGMAVHGGSGVSVGVIEALRAIRPL--SRHLELVHRLDRDTSGCLM 145
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+A+ + + H +++ +++K+Y AL EG + +
Sbjct: 146 VAKKRSRLRVLHEQLQAGEIRKVYWALV------------------------EGRWKGKF 181
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPS-------RDYAYECKIKL--LTGRTHQVRAQL 389
++ + + + + G PS R + ++ LTGRTHQ+R
Sbjct: 182 RRIDAPLQKFGEQGGERIVKVSQQGKPSSTEFVLLRHFEETSLVEASPLTGRTHQIRVHA 241
Query: 390 AACGAPIVGDSMY 402
G PIVGD Y
Sbjct: 242 QFAGHPIVGDDKY 254
>gi|419767492|ref|ZP_14293645.1| pseudouridine synthase, RluA family [Streptococcus mitis SK579]
gi|383353035|gb|EID30662.1| pseudouridine synthase, RluA family [Streptococcus mitis SK579]
Length = 296
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 27/259 (10%)
Query: 154 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTF--RITHVDQIVEAGTYLRVHVHPKRFPRC 211
+R+ K ++D + LS+ S+ + ++ Q ++ V+ G + HV
Sbjct: 10 LRLDKALSDLTELSR--SLANEQIKSGQVLVNGQVKKAKYTVQEGDVVTYHVPEPEVLEY 67
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLR--T 265
+ II E V++KP G S G T+ + + G+ LR
Sbjct: 68 VAENLPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGI 127
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H+ID T G +++A+ E +++++KK + Y A+ LP R + A
Sbjct: 128 VHRIDKDTSGLLMIAKNDEAHLALAQELKDKKSLRKYWAIVHGNLPND------RGVIEA 181
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
P SE Q + K P V + Y +E G DY+ +++L TGRTHQ+
Sbjct: 182 PIGRSEKDRKKQ--AVTAKGKP----AVTRFYVLERFG----DYSL-VELQLETGRTHQI 230
Query: 386 RAQLAACGAPIVGDSMYMP 404
R +A G P+ GD +Y P
Sbjct: 231 RVHMAYIGHPVAGDEVYGP 249
>gi|385826351|ref|YP_005862693.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|329667795|gb|AEB93743.1| hypothetical protein LJP_1421 [Lactobacillus johnsonii DPC 6026]
Length = 282
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 49/193 (25%)
Query: 228 VVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPAG D CAT+ LG + P H++D T G +++A+
Sbjct: 92 LVINKPAGQKTHPNLNEEDTALNDCATY----LGYS-PF-IVHRLDMLTSGLLLVAKNPA 145
Query: 285 YCSIFHRKIREKKVKKLYLA-LTTAP---------LPVGIMTHYMRPINIAPRLVSEGWY 334
I +R++ +K + + YLA ++ +P LP+G H R R+V +
Sbjct: 146 VVPILNRQLTDKTLHREYLAWISNSPQIKNTGIIDLPIGHDPHDQRK-----RMVRQDGQ 200
Query: 335 --LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ EV++ K D + K+ L TGRTHQ+R LAA
Sbjct: 201 KAVTHYEVIKRDK----DRIL-------------------VKLTLETGRTHQIRVHLAAL 237
Query: 393 GAPIVGDSMYMPA 405
GAPI+GD +Y A
Sbjct: 238 GAPIIGDPLYNSA 250
>gi|42519556|ref|NP_965486.1| hypothetical protein LJ1679 [Lactobacillus johnsonii NCC 533]
gi|41583845|gb|AAS09452.1| hypothetical protein LJ_1679 [Lactobacillus johnsonii NCC 533]
Length = 282
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 49/193 (25%)
Query: 228 VVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPAG D CAT+ LG + P H++D T G +++A+
Sbjct: 92 LVINKPAGQKTHPNLNEEDTALNDCATY----LGYS-PF-IVHRLDMLTSGLLLVAKNPA 145
Query: 285 YCSIFHRKIREKKVKKLYLA-LTTAP---------LPVGIMTHYMRPINIAPRLVSEGWY 334
I +R++ +K + + YLA ++ +P LP+G H R R+V +
Sbjct: 146 VVPILNRQLTDKTLHREYLAWISNSPQIKNTGIIDLPIGHDPHDQRK-----RMVRQDGQ 200
Query: 335 --LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ EV++ K D + K+ L TGRTHQ+R LAA
Sbjct: 201 KAVTHYEVIKRDK----DRIL-------------------VKLTLETGRTHQIRVHLAAL 237
Query: 393 GAPIVGDSMYMPA 405
GAPI+GD +Y A
Sbjct: 238 GAPIIGDPLYNSA 250
>gi|403386405|ref|ZP_10928462.1| RluA family pseudouridine synthase [Clostridium sp. JC122]
Length = 320
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM---RPIN 323
+++D T G V+ + + IRE+KV+K Y+AL + G Y+ N
Sbjct: 141 NRLDRNTSGIVIYGKNFSSLKEMNEMIRERKVEKYYMALIKGKIKEGYYEAYISKNEDNN 200
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
I+ +V E K P + I+ CG S +++LLTGR+H
Sbjct: 201 IS-------------KVYEEYK-PNTKKIAMRVKVIQSCGIFSL-----VELELLTGRSH 241
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
Q+R+ LA G PIVGD+ Y +L+S +N +G
Sbjct: 242 QLRSHLAFLGNPIVGDTKY---GEKKLNSFFVNRYG 274
>gi|331701048|ref|YP_004398007.1| RluA family pseudouridine synthase [Lactobacillus buchneri NRRL
B-30929]
gi|329128391|gb|AEB72944.1| pseudouridine synthase, RluA family [Lactobacillus buchneri NRRL
B-30929]
Length = 296
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 228 VVLDKPAGTS---VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KP G + D++ + R + ++D T G V+ A+
Sbjct: 89 LVVNKPYGVASVPAHNHVDSLVNRVKGYYQRQGYANQKIHIVTRLDKDTSGLVIFAKHHF 148
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
S+ ++++++ ++K YLA+ + + Y+ PI A + +V++
Sbjct: 149 AHSVLDKQLKDRTIQKTYLAIVAGRISMPHFEIYL-PIGRADD------SFVKRQVVDSG 201
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYE--CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K+ +A W R A + K++L TGRTHQ+R +AA G P++GD +Y
Sbjct: 202 KMSVTEA------------WTVRRLAKQTLLKVRLHTGRTHQIRVHMAAIGHPLIGDWLY 249
>gi|406969316|gb|EKD93992.1| Pseudouridine synthase [uncultured bacterium]
Length = 318
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 39/210 (18%)
Query: 219 RIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRAL----GLTTPLRTTHQID 270
+++ +++ V+DKPAG V G ++ + E+ + L G+ P H++D
Sbjct: 88 KVLFEDQNYAVIDKPAGLVVHPGAGVHSETLTEALKSHFKDQLSHMGGVNRP-GIVHRLD 146
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRP 321
T G +V+A+ E ++ K + KLY AL L P+ + +
Sbjct: 147 KGTSGIMVIAKNDETHRNLAKQFESKTIIKLYTALVVGHLTPKQGSIEAPLTRNEKHRQK 206
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
I I+ S + L EV+ VP + + K+++ TGR
Sbjct: 207 ITISTHPKSR-YALTHYEVLRWMDVPCKSSLL--------------------KVRIETGR 245
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
THQ+R A G PIVGD +Y +I L+
Sbjct: 246 THQIRVHCEAIGYPIVGDPVYGTKSINLLA 275
>gi|197120696|ref|YP_002132647.1| pseudouridine synthase [Anaeromyxobacter sp. K]
gi|196170545|gb|ACG71518.1| pseudouridine synthase, RluA family [Anaeromyxobacter sp. K]
Length = 312
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 227 HVVLDKPAGTSV-------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++V++KPAG +V GGT N + + A ++D T GCV+
Sbjct: 86 YLVVEKPAGVAVHPLAPGEGGTLANAVAARHPECAEASPEPREGGAVQRLDLETSGCVLF 145
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG-----IMTHYMRPINIAPRLVSEGWY 334
AR E H ++ V K+YLAL LP G + + AP L +E
Sbjct: 146 ARDPEAWEALHAQLGAHTVDKVYLALAVGRLPAGGVCSVPLAQRGGRVVPAPDLEAE--- 202
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE--CKIKLLTGRTHQVRAQLAAC 392
E ++ + + + E P R +A +++++TG HQ+RA LA
Sbjct: 203 ----ERLQARGL--------RPRPAETHYEPERRFADHTLLRVRIVTGVMHQIRAHLALL 250
Query: 393 GAPIVGDSMYMPAAIAQLSSPGLN 416
G P+ GD++Y AA PGL
Sbjct: 251 GHPVAGDALYGGAAA---GLPGLE 271
>gi|444430277|ref|ZP_21225455.1| putative pseudouridine synthase [Gordonia soli NBRC 108243]
gi|443888821|dbj|GAC67176.1| putative pseudouridine synthase [Gordonia soli NBRC 108243]
Length = 302
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 25/193 (12%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
I ++ I+ + VV+DKP + ++ ES R+LG TT + H++D T
Sbjct: 70 IPFDLPILYRDDDIVVVDKPHFLATMPRGRHVAESALVRLRRSLGSTT-VSPAHRLDRLT 128
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G ++ E S + + +++V K Y AL AP P G T M + R+V
Sbjct: 129 AGVLLCTLRPEVRSAYQQLFADRRVHKEYRAL--APAPTGPDTSTM---TVRNRIVKTAG 183
Query: 334 YL----CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
L EV ++ DAT D E ++ TGRTHQ+R +
Sbjct: 184 DLRARVVDGEVNAISEITPLDAT---------------DDGTEYRLTPHTGRTHQLRMHM 228
Query: 390 AACGAPIVGDSMY 402
A G IVGD +Y
Sbjct: 229 AGLGVGIVGDPLY 241
>gi|367014827|ref|XP_003681913.1| hypothetical protein TDEL_0E04590 [Torulaspora delbrueckii]
gi|359749574|emb|CCE92702.1| hypothetical protein TDEL_0E04590 [Torulaspora delbrueckii]
Length = 406
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 22/195 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I+ E+ +VLDKP G + T + + E T A R +++D T G
Sbjct: 115 IVYEDENMLVLDKPNGIPIHPTGQFYQNTLTEILKTRNKEA-------RPCYRLDKVTSG 167
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV------GIMTHYMRPINIAPRLV 329
+++ +T+ + KIR + + K+YLA + P GI H P +
Sbjct: 168 LLIMGKTKAIANEIQAKIRSRDMDKIYLARVSGKFPKSECLTRGIEDHLPTPFEDKSMIT 227
Query: 330 S--EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ Y +L+ + P Y + +P+ + K LTGRTHQ+R
Sbjct: 228 TADSATYTVELKKSFPAGLSVPKTAATSFYPLR--YFPNHNQTL-VACKPLTGRTHQIRI 284
Query: 388 QLAACGAPIVGDSMY 402
LA G PIV D Y
Sbjct: 285 HLARMGFPIVNDPFY 299
>gi|423552873|ref|ZP_17529200.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|401185486|gb|EJQ92580.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
Length = 307
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ +I R + E+K+K+ Y AL + + I + + + +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVK-------KKQGTIDAAIGRDRHHATR----- 200
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++V Y +E+ + + ++L TGRTHQ+R ++ G P+VGD +Y
Sbjct: 201 -RRVSQKGDQAITYYKVEE--YFKKQNVTLVTLQLETGRTHQIRVHMSYNGNPLVGDVLY 257
>gi|383450992|ref|YP_005357713.1| 23S rRNA pseudouridine synthase [Flavobacterium indicum GPTSA100-9]
gi|380502614|emb|CCG53656.1| Probable 23S rRNA pseudouridine synthase [Flavobacterium indicum
GPTSA100-9]
Length = 229
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D T G VV A+T + + + + ++ +K Y A+ P I+ HY++
Sbjct: 60 LGVIHRLDRPTTGIVVFAKTSKALTRLNETFKNRETQKTYWAIVKNQPPQTEDILIHYIK 119
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
P+ + ++ EV E KK AY I D Y ++ L TG
Sbjct: 120 R---NPKNNTSKAHVN--EVPESKKASL-------AYKI----IKKLDNYYALEVDLHTG 163
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+RAQLAA G PI GD Y
Sbjct: 164 RHHQIRAQLAAIGCPIKGDLKY 185
>gi|387592800|gb|EIJ87824.1| hypothetical protein NEQG_01896 [Nematocida parisii ERTm3]
Length = 426
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G + + + + GL+ + +++D T G V+LA++ +
Sbjct: 95 LVVDKPSGIPCHPNSSYNKHTLTEILKKKCGLSF-VSAQNRLDKQTSGVVILAKSSKAAV 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLP-----VGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+H+KI EK+ K+YL + P V + R +G + + +
Sbjct: 154 KYHKKIEEKEGFKIYLCKVSGEFPECEVIVNLPLSISRKTCTTTVFQEDGVFQGKPSITI 213
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++V +V SI CG L+TGRTHQ+R L A G PI+ D +Y
Sbjct: 214 FRRV-----SVENGESILACG-------------LVTGRTHQIRVHLQAIGYPIIDDMIY 255
>gi|352090010|ref|ZP_08954247.1| pseudouridine synthase [Rhodanobacter sp. 2APBS1]
gi|389797081|ref|ZP_10200125.1| pseudouridine synthase [Rhodanobacter sp. 116-2]
gi|351678546|gb|EHA61692.1| pseudouridine synthase [Rhodanobacter sp. 2APBS1]
gi|388447914|gb|EIM03908.1| pseudouridine synthase [Rhodanobacter sp. 116-2]
Length = 295
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
VV DKP V +E++ LG + L H+ID T G V+ + +
Sbjct: 98 VVADKPHFLPVTPAGGFVEQTLLRRLMHRLG-NSDLVPLHRIDRATAGLVLFSANPASRA 156
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ RE+++ K Y AL PLP P++ R+V+ + EV
Sbjct: 157 AYQALFRERRIDKRYEALAP-PLPSLAF-----PLSRRSRIVAGEPFFRMREV------- 203
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
D IE G + A+ + ++GR HQ+R +AA GAPIVGD++Y
Sbjct: 204 --DGEPNSETRIEPIG--RGEDAWRYALFPVSGRKHQLRVHMAALGAPIVGDTLY 254
>gi|344923106|ref|ZP_08776567.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 323
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+ S II E ++++KP+G +V G T A R TH+ID T G
Sbjct: 93 FKSLIIWEDEDLLIINKPSGLAVQGGTKTFRHVDRYLAGLGELNNCRYRLTHRIDRDTSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLP-VGIMTHYMRPINIAPRLVSEGW 333
+V+A+ + + ++ ++ KV+K+Y A+T P P GI+ AP
Sbjct: 153 LLVIAKKSDMATHLTQQFKDGKVEKIYWAVTLGQPRPGSGILK--------AP------- 197
Query: 334 YLCQLEVMECKKVPWPDATVGKA-----YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
L + V + +KV D GK +++ P Y ++K TGRTHQ+R
Sbjct: 198 -LIKAGVGDKEKVV-VDFETGKPAITVYQTLKRLEKPRLPYMAWVELKPQTGRTHQLRVH 255
Query: 389 LAACGAPIVGDSMY 402
API+GD Y
Sbjct: 256 CVHLDAPILGDGKY 269
>gi|268319938|ref|YP_003293594.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
gi|262398313|emb|CAX67327.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
Length = 282
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 49/190 (25%)
Query: 228 VVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPAG D CAT+ LG + P H++D T G +++A+
Sbjct: 92 LVINKPAGQKTHPNLNEEDTALNDCATY----LGYS-PF-IVHRLDMLTSGLLLVAKNPA 145
Query: 285 YCSIFHRKIREKKVKKLYLA-LTTAP---------LPVGIMTHYMRPINIAPRLVSEGWY 334
I +R++ +K + + YLA ++ +P LP+G H R R+V +
Sbjct: 146 VVPILNRQLTDKTLHREYLAWISNSPQIKNTGIIDLPIGHDPHDQRK-----RMVRQDGQ 200
Query: 335 --LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ EV++ K D + K+ L TGRTHQ+R LAA
Sbjct: 201 KAVTHYEVIKRDK----DRIL-------------------VKLTLETGRTHQIRVHLAAL 237
Query: 393 GAPIVGDSMY 402
GAPI+GD +Y
Sbjct: 238 GAPIIGDPLY 247
>gi|398804473|ref|ZP_10563467.1| 23S RNA-specific pseudouridylate synthase [Polaromonas sp. CF318]
gi|398093646|gb|EJL84022.1| 23S RNA-specific pseudouridylate synthase [Polaromonas sp. CF318]
Length = 236
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ +S +VLDKPAG ++ C ++R + H++D T G +++
Sbjct: 23 LLHADDSLLVLDKPAGLLAVPGRGEGKQDC--LSARVQAVYPDALVVHRLDQATSGLMLM 80
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
AR ++V K Y+A+ LP + ++GW L
Sbjct: 81 ARGAAMQRALSLAFESREVGKRYVAVVEGRLPPPPPSSLD----------NDGWGSIDLP 130
Query: 340 VMECKKVPWPDATVGKAYSIEDC--GWPSRD----YAYEC-------KIKLLTGRTHQVR 386
++ V WP+ + I D G PSR A++ +++ +TGR+HQ+R
Sbjct: 131 II----VDWPN----RPLRIIDAERGKPSRTRWRVLAFDAAANTTRVELEPITGRSHQLR 182
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLSSPGL 415
L A G PI+GD++Y PA + Q +P L
Sbjct: 183 VHLQALGHPILGDALYAPAEV-QAKAPRL 210
>gi|387595421|gb|EIJ93045.1| hypothetical protein NEPG_02001 [Nematocida parisii ERTm1]
Length = 426
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G + + + + GL+ + +++D T G V+LA++ +
Sbjct: 95 LVVDKPSGIPCHPNSSYNKHTLTEILKKKCGLSF-VSAQNRLDKQTSGVVILAKSSKAAV 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLP-----VGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+H+KI EK+ K+YL + P V + R +G + + +
Sbjct: 154 KYHKKIEEKEGFKIYLCKVSGEFPECEVIVNLPLSISRKTCTTTVFQEDGVFQGKPSITI 213
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++V +V SI CG L+TGRTHQ+R L A G PI+ D +Y
Sbjct: 214 FRRV-----SVENGESILACG-------------LVTGRTHQIRVHLQAIGYPIIDDMIY 255
>gi|417000442|ref|ZP_11940658.1| pseudouridine synthase, RluA family [Veillonella parvula
ACS-068-V-Sch12]
gi|333976144|gb|EGL77016.1| pseudouridine synthase, RluA family [Veillonella parvula
ACS-068-V-Sch12]
Length = 289
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 31/260 (11%)
Query: 151 PEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR 210
P ++ V K V + LS R + + R+ H + ++ G L + + P+
Sbjct: 11 PTELTVSKYVKERFSLSARDIQMMFRKKRVKVNSRVAHSQRALKKGDVLTLEL-PQDKDY 69
Query: 211 CYDID--------WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
D++ ++ + V ++ +L PAG + T N A + ++ +
Sbjct: 70 GVDVEKGPITVLYEDAHTLVVNKAPFMLVHPAGQTKSCTLSNY---VAGYYAKK-NVVHK 125
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R H++D T GC++ +T+E + +++ ++ ++Y L + M PI
Sbjct: 126 VRPVHRLDRDTSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGRIDADGMVD--API 183
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
+ P V + ++V G++ E + KLLTGRT
Sbjct: 184 GVDP-------------VFDNRRVI---DEFGQSAQTEYTVLGHEGDNTLLRFKLLTGRT 227
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R + G PI+GD+MY
Sbjct: 228 HQIRVHMEHIGHPIIGDAMY 247
>gi|425078421|ref|ZP_18481524.1| ribosomal large subunit pseudouridine synthase A [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425089053|ref|ZP_18492146.1| ribosomal large subunit pseudouridine synthase A [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405590282|gb|EKB63816.1| ribosomal large subunit pseudouridine synthase A [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600191|gb|EKB73358.1| ribosomal large subunit pseudouridine synthase A [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
Length = 219
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 39/201 (19%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A + R+ RE++ KK Y+AL P P +EG L
Sbjct: 72 VVALNKAAERELKRQFREREPKKQYVALVWGHPQP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATV-------GKAYSIE-DCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
L ++ C WP+ + GKA E + + D ++K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVH 167
Query: 389 LAACGAPIVGDSMY-MPAAIA 408
+ A G PI+GD Y P A+A
Sbjct: 168 MLALGHPILGDRFYATPEALA 188
>gi|419800604|ref|ZP_14325879.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
gi|385694626|gb|EIG25216.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
Length = 274
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 37/187 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E + S +G T H++D T G ++ A+
Sbjct: 78 IIVNKPEGMKTHAN-EPTEIALLNHVSSYVGSTC--YVVHRLDKETSGAILFAKNPFILP 134
Query: 288 IFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + +K +++ Y AL L +G H R + PR +G Y +
Sbjct: 135 ILNRILEDKNIQREYWALIQGNLAQKTIVYKDKIGRDRHDRRKRLVDPR---KGQY-AET 190
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+V + KK+ R+ +C++K TGRTHQ+R L+ G PIVG
Sbjct: 191 QVTQLKKI-------------------GRNSLVKCQLK--TGRTHQIRVHLSHHGHPIVG 229
Query: 399 DSMYMPA 405
D +Y PA
Sbjct: 230 DPLYNPA 236
>gi|312114651|ref|YP_004012247.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219780|gb|ADP71148.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 358
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 84/202 (41%), Gaps = 37/202 (18%)
Query: 226 SHVVLDKPAGTSV--------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
S +V+DKPAG V G + + C S G+T P H++D T G +
Sbjct: 99 SLIVIDKPAGLVVHPGAGNPNGTLVNALIAHCGDSLSGIGGVTRP-GIVHRLDKNTSGLM 157
Query: 278 VLARTQE----YCSIFHRKIREKKVKKLYLAL-------TTAPLPVGIMTHYMRPINIAP 326
V+A+T + + F R +++ YLAL T+ + I H I +A
Sbjct: 158 VVAKTDKAHRSLSAQFADHGRTGALRREYLALVWGEPQPTSGRIEARIARHAGSRIKMA- 216
Query: 327 RLVSEGW------YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
+V G Y + V V A +GK W + KL TG
Sbjct: 217 -VVRNGGREAATIYATE-RVFRLGNVESQSAAMGK--------WNKTATLSVLRCKLETG 266
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQVR LA G P+VGDS+Y
Sbjct: 267 RTHQVRVHLAHIGVPLVGDSVY 288
>gi|71083779|ref|YP_266499.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1062]
gi|91763185|ref|ZP_01265149.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1002]
gi|71062892|gb|AAZ21895.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1062]
gi|91717598|gb|EAS84249.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1002]
Length = 304
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 35/189 (18%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II + +VL+K +G SV G T + + FA + T + H++D T G ++
Sbjct: 92 IIDNNDDFIVLNKSSGISVQGGTKSKKNLVDIFARSEIFQDTKPFSVHRLDKDTSGVFIM 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW------ 333
A+ ++ + R +KV K YLA+ L S W
Sbjct: 152 AKHRQSAQLLTSLFRLRKVHKTYLAICHGELQKD----------------SGEWNDDLTR 195
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
Y EV+E + + V SI C ++K +TGR HQ+R QL A G
Sbjct: 196 YDNDREVVEKARTLYK---VLDKNSI--CSL--------VEMKPITGRKHQLRKQLYAVG 242
Query: 394 APIVGDSMY 402
PI GD Y
Sbjct: 243 CPIYGDQKY 251
>gi|329919667|ref|ZP_08276645.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|328937319|gb|EGG33743.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
Length = 292
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KPAG TD CA + LG + + H++D T G
Sbjct: 93 IIYENDDVLVINKPAGQKTHPNLYETDTALNDCANY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT----------TAPLPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A T LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIEATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V E KK T K K++L TGRTHQ+R
Sbjct: 202 RMVREDGLKAITHYQVVKK------TANKIL---------------VKLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|167645622|ref|YP_001683285.1| RluA family pseudouridine synthase [Caulobacter sp. K31]
gi|167348052|gb|ABZ70787.1| pseudouridine synthase, RluA family [Caulobacter sp. K31]
Length = 329
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S ++ E + L+KPAG +V G T ++ G+ P + H++D T G
Sbjct: 88 KSLVLYEDEEVLALNKPAGLAVQGGTKTTHHIDKLLSAWGEGVNRP-KLVHRLDRDTSGV 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYL 335
++L +T + ++K +K Y A+ P P T + +++A R V + +
Sbjct: 147 LLLGKTPAAAARLSGSFAKRKAQKTYWAIVAGNPHP----TEGVIELHLAKRGVGDRELV 202
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
E + P V + + W ++ TGRTHQ+RA + A G P
Sbjct: 203 VPAEPKDPDGQPAETEFVSISRAGPRVTW--------MALRPHTGRTHQLRAHMKAIGHP 254
Query: 396 IVGDSMYMPAAIAQLS 411
I+GD Y QLS
Sbjct: 255 ILGDPKYSDDKALQLS 270
>gi|118579004|ref|YP_900254.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118501714|gb|ABK98196.1| pseudouridine synthase, RluA family [Pelobacter propionicus DSM
2379]
Length = 306
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ L+KPAG + T ++ + +AS R G P R H++D T G ++ + +
Sbjct: 89 IALNKPAGVNTQRTPYQLKGTLEYWASEYFRRQGNPEPARVIHRLDRGTSGVMLFPKHKR 148
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ ++ + +V+K YLAL + P I PI ++ S + +
Sbjct: 149 AAAWLSKRFHDGQVEKRYLALVSGT-PGQIEWRVDGPIG---KIASARYGIV-------- 196
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY-- 402
A E CG YA + K LTGRTHQ+R L +CG PIVGD Y
Sbjct: 197 -AGGRSALTEFRLLAESCG-----YAL-VEAKPLTGRTHQIRVHLQSCGLPIVGDGTYGG 249
Query: 403 MPAAIAQL 410
PAA L
Sbjct: 250 EPAARMML 257
>gi|452963354|gb|EME68427.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
sp. SO-1]
Length = 228
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 15/187 (8%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
SR++ + +VLDKPAG +V ++ + + G + H++D T GC+
Sbjct: 8 SRVLYKDQDVIVLDKPAGLAVHAGPNSPDHLELYLPGLSFGWAEVPKLAHRLDRDTSGCL 67
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+L R + + + +V K+Y ++ T + ++ R +GW +
Sbjct: 68 ILGRHAKAIKRLGKMFEQHRVDKVYWSVCHGAPEADSGTVDAPLLKVSAR--GQGWRIKV 125
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ W + +G+ + W R TGRTHQ+R G P++
Sbjct: 126 DPAGQPSMTDW--SVLGRGGGLSWIEWRPR-----------TGRTHQIRIHAKHLGCPLL 172
Query: 398 GDSMYMP 404
GD+ Y P
Sbjct: 173 GDAYYGP 179
>gi|254459281|ref|ZP_05072702.1| ribosomal large subunit pseudouridine synthase, RluA family
[Sulfurimonas gotlandica GD1]
gi|373866526|ref|ZP_09602924.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
gotlandica GD1]
gi|207083894|gb|EDZ61185.1| ribosomal large subunit pseudouridine synthase, RluA family
[Sulfurimonas gotlandica GD1]
gi|372468627|gb|EHP28831.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
gotlandica GD1]
Length = 325
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 19/225 (8%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF 252
+++G ++V + DID+N I+ + +V++KP+G +V E + +
Sbjct: 53 LKSGQNIKVEFPEAKESPALDIDFNVEILYEDDDVLVINKPSGVTVHPAPSVKEATLVDW 112
Query: 253 AS----RALGLTTPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
R ++ R H++D T G +V+A+ E ++++K + + YLA+
Sbjct: 113 LKHKGIRLSNISGEERHGIVHRLDKGTSGTMVVAKNNEAHEFLSEQLQDKSMGRYYLAVL 172
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
PL I T I + ++ + K + T+ K S+ +
Sbjct: 173 NPPLKDEITT-------IEQNIGRSAHNRLKMTCTDAGKSKYA-KTMFKVLSLSN---DE 221
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
+ C KL TGRTHQ+R L + I+GD +Y + A+ S
Sbjct: 222 KQQFVAC--KLFTGRTHQIRVHLESINRHIIGDHIYALSPKAEKS 264
>gi|229195588|ref|ZP_04322354.1| Pseudouridine synthase [Bacillus cereus m1293]
gi|423576890|ref|ZP_17553009.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|423606904|ref|ZP_17582797.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
gi|228587837|gb|EEK45889.1| Pseudouridine synthase [Bacillus cereus m1293]
gi|401206640|gb|EJR13428.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|401241094|gb|EJR47486.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
Length = 307
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSVG-------GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++KP GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
+ +I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK------ 206
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D + Y +E + + ++L TGRTHQ+R ++ G
Sbjct: 207 ---------------GDQAI-TYYKVEK--YFRKQNVTLVTLQLETGRTHQIRVHMSYNG 248
Query: 394 APIVGDSMY 402
P+VGD +Y
Sbjct: 249 NPLVGDVLY 257
>gi|118581355|ref|YP_902605.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118504065|gb|ABL00548.1| pseudouridine synthase, RluA family [Pelobacter propionicus DSM
2379]
Length = 310
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 48/199 (24%)
Query: 229 VLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+++KP+G ++ T T+ +E+ A A R G L +++D T G V+LA++
Sbjct: 89 IVNKPSGLAMHRTAEQETNLVEQGTAFMAWR--GTPCKLYPVNRLDRGTSGAVILAKSST 146
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
IF R+++E + KLYLAL +A R G L+ EC+
Sbjct: 147 AAGIFGRQVKETGLDKLYLAL------------------VAGRPDGAGVIDAPLDGKECR 188
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL-----TGRTHQVRAQLAACGAPIVGD 399
R A C LL +GR HQ+R L G PI+GD
Sbjct: 189 T-------------------DYRLLAQGCGFSLLELLPFSGRMHQIRRHLEMIGHPILGD 229
Query: 400 SMYMPAAIAQLSSPGLNPF 418
Y + +L+ L+ F
Sbjct: 230 QRYSGRVVEELAGFALHSF 248
>gi|253579056|ref|ZP_04856327.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849999|gb|EES77958.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 299
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-----FASRALGLTTPLRTTHQ 268
+D N II E +V++KPA V + N E + A FA + G R ++
Sbjct: 79 MDLN--IIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFAEK--GEDFVYRCINR 134
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
+D T G ++LA+ +I +++++++ + YLAL LP IN AP
Sbjct: 135 LDRDTTGALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDS------GTIN-APIA 187
Query: 329 VSEGWYLCQ---LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
EG + + E + GK YS+ ++ L TGRTHQ+
Sbjct: 188 RMEGSVITREVNFGTGESAITHYERLAAGKEYSL-------------AELHLETGRTHQI 234
Query: 386 RAQLAACGAPIVGDSMYMP 404
R + G P+ GD +Y P
Sbjct: 235 RVHMKYIGHPLPGDYLYNP 253
>gi|422565694|ref|ZP_16641333.1| RNA pseudouridine synthase [Propionibacterium acnes HL082PA2]
gi|314965704|gb|EFT09803.1| RNA pseudouridine synthase [Propionibacterium acnes HL082PA2]
Length = 281
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 23 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 76
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 77 PPFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 135
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 136 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 186
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+ A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 187 GVPNTVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 236
>gi|444918132|ref|ZP_21238211.1| ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
gi|444710246|gb|ELW51233.1| ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
Length = 331
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P ++ DW +VLDKPAG + T + + + LG +
Sbjct: 80 PTEVPVVFEDDWL----------LVLDKPAGLPLHPTARYHKGTLVSLLRERLGHAS-AE 128
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G VV RT E C + R ++V K YLA+ AP+ G
Sbjct: 129 PAHRLDRETSGLVVCGRTTEACRVLGRLFISREVHKEYLAICEGHPPEDSFRVDAPIAEG 188
Query: 314 IMTHYMR-PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
T +R + I P L E + EV+ + G+ +++ C P
Sbjct: 189 --TELIRIAVRIDPILGKESH--TRFEVLSRFTL------EGEPFALLRC-HPE------ 231
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
TGR HQ+R L G P+VGD MY P
Sbjct: 232 ------TGRQHQIRVHLREAGFPLVGDKMYGP 257
>gi|50311419|ref|XP_455734.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644870|emb|CAG98442.1| KLLA0F14553p [Kluyveromyces lactis]
Length = 377
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 19/183 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E +V++KP G V T + + +LG P+ +++D T G ++L
Sbjct: 113 IVHQDEQLLVINKPNGIPVHPTAYFYKNTLTELLKDSLGY--PVHPCYRLDKITSGLLIL 170
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + KIR++ +KK YLA P + PI Y C L+
Sbjct: 171 AKNPIDANRVQSKIRDRDMKKYYLARVKGKFPETAVDK--SPI-----------YTCDLK 217
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+ P DA + + + + CK TGRTHQ+R LA G PI D
Sbjct: 218 IKSEPLSPLKDAHT--EFELMEYDAVTDQSIVLCKP--FTGRTHQIRIHLARQGHPITND 273
Query: 400 SMY 402
Y
Sbjct: 274 PFY 276
>gi|312875041|ref|ZP_07735059.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|311089436|gb|EFQ47862.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
Length = 283
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V+DKPAG TD CA++ LG + + H++D T G
Sbjct: 84 IIYENDDVLVIDKPAGQKTHPNLYETDTALNDCASY----LGYSPYI--VHRLDMLTNGL 137
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT----------TAPLPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A T LP+G P+++
Sbjct: 138 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIEATNDISDNGTINLPIG-----DDPLDMRK 192
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK T K K++L TGRTHQ+R
Sbjct: 193 RMVRTDGLKAITHYQVVKK------TANKIL---------------VKLQLETGRTHQIR 231
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 232 VHLAAIGHPIIGDPLY 247
>gi|332295618|ref|YP_004437541.1| RluA family pseudouridine synthase [Thermodesulfobium narugense DSM
14796]
gi|332178721|gb|AEE14410.1| pseudouridine synthase, RluA family [Thermodesulfobium narugense
DSM 14796]
Length = 319
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +++A++++ + + ++VKK YLAL + +Y
Sbjct: 142 VHRLDKETTGVLIIAKSEKIMRKLSEQFKNRQVKKTYLALVYGDV------NYKEGFISM 195
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
P + + ++EV KV + + YS+ + G + K+ + TGRTHQ+
Sbjct: 196 P-IKRSKIHRQKMEVNLSGKVAFTE------YSVINKGIFEKQIVSLLKVNIFTGRTHQI 248
Query: 386 RAQLAACGAPIVGDSMY 402
R ++ G PIVGD Y
Sbjct: 249 RVHMSYIGHPIVGDKKY 265
>gi|184199951|ref|YP_001854158.1| putative pseudouridine synthase [Kocuria rhizophila DC2201]
gi|183580181|dbj|BAG28652.1| putative pseudouridine synthase [Kocuria rhizophila DC2201]
Length = 326
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +DKP G +N+ S A+R + H++D T G ++L + E S
Sbjct: 112 MAVDKPHGLCSTPKGENVRRSV-VVAARCQFDNDEISALHRLDRSTGGVLLLCKRAEDRS 170
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS-EGWYLCQLEVMECKKV 346
FHR +E+ V+K Y A+ VG T + + R+ +G E E V
Sbjct: 171 AFHRLFQERTVRKTYWAVAGVNERVGEQT-----VRVESRIRKIQGVVQAFEEPGEVNAV 225
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
D + ++ D W YE I LTGRTHQ+R + + G P+ GD +Y
Sbjct: 226 --TDVRRVETFTDADGTW----GLYE--IAPLTGRTHQIRVHMTSLGLPLRGDKLY 273
>gi|347529629|ref|YP_004836377.1| putative pseudouridine synthase [Sphingobium sp. SYK-6]
gi|345138311|dbj|BAK67920.1| putative pseudouridine synthase [Sphingobium sp. SYK-6]
Length = 244
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 22/194 (11%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
R++ + ++LDKPAG V D AS G H++D T GC
Sbjct: 18 TDRVLFIDGEAIILDKPAGLPVDPPRDGSLSLHNHLASLTFGFERWPVAVHRLDRDTSGC 77
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPR-LVSEGW 333
++LAR + F + V+K YLA+ P G++ + +A R + GW
Sbjct: 78 LLLARNPKAAKRFTEAFEARAVEKSYLAVVDGVPDAPEGVID-----LPLAKRSTAATGW 132
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ-LAAC 392
+ PDA GK +RD + TGRTHQ+RA L
Sbjct: 133 RMV------------PDA-AGKQAVTHWHLLAARDGRALLRFTPETGRTHQLRAHSLHGL 179
Query: 393 GAPIVGDSMYMPAA 406
G I+GD +Y A
Sbjct: 180 GFGILGDPVYSSGA 193
>gi|389690733|ref|ZP_10179626.1| 23S RNA-specific pseudouridylate synthase [Microvirga sp. WSM3557]
gi|388588976|gb|EIM29265.1| 23S RNA-specific pseudouridylate synthase [Microvirga sp. WSM3557]
Length = 226
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 20/200 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+R++ +V+DKPAG V E + GL H++D T GC+
Sbjct: 8 NRLLYRDALMLVIDKPAGLPVHPGPKGGETLFHHLDALRFGLPRRPEAAHRLDKDTSGCL 67
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR-PINIAPRLVSEGWYLC 336
VL R + + + R+ +V K+Y A+ G + +AP+ GW++
Sbjct: 68 VLGRHPKAIARLNELFRKGEVDKVYWAVVEG----GPHEDEGEIDLALAPKSPDRGWWMK 123
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ W G+ + +++ +TGRTHQ+R AA PI
Sbjct: 124 VDPKGQPSLTKWRVLGRGEGLCL-------------LELRPITGRTHQLRVHCAAMNFPI 170
Query: 397 VGDSMYMPAAIAQLSSPGLN 416
+GD +Y + PGL+
Sbjct: 171 LGDPIY--GTAPRFHGPGLH 188
>gi|419801690|ref|ZP_14326905.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK262]
gi|419844396|ref|ZP_14367687.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK2019]
gi|385193297|gb|EIF40675.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK262]
gi|386417521|gb|EIJ32000.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK2019]
Length = 225
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ T+ +++ KP G SV D E T + LG+ + H++D T G ++L
Sbjct: 5 IVYQTDDFIIIYKPCGLSV--HKDQSEIGLTTLLAEQLGVPQ-VWLVHRLDKVTSGLLIL 61
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAP------LPVGIMTHYMRPINIAPRLVSEGW 333
A E + F R E ++K YLAL+ L VG M + + W
Sbjct: 62 ALNAESAAEFFRLFSEHHIQKTYLALSNQKPKKKQGLIVGDMQ----------KARNGAW 111
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
LCQ K+ P + + S+ C R + +K TG+THQ+R + + G
Sbjct: 112 KLCQ-----SKENP----AITRFESV-SCEPNLRLFI----LKPQTGKTHQLRVAMKSLG 157
Query: 394 APIVGDSMY 402
+PI+GD +Y
Sbjct: 158 SPILGDLLY 166
>gi|336452974|ref|YP_004607440.1| ribosomal large subunit pseudouridine synthase D [Helicobacter
bizzozeronii CIII-1]
gi|335333001|emb|CCB79728.1| ribosomal large subunit pseudouridine synthase D [Helicobacter
bizzozeronii CIII-1]
Length = 293
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 31/169 (18%)
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
TD++ ES +A R H++D T G V++++++ + + ++++K
Sbjct: 98 TDSLYESIYAHNPQA-------RLIHRLDYETSGLVLVSQSKAHENALRELFSLRRIQKT 150
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDA------TVGK 355
YLA L RL + G + L ++E + T GK
Sbjct: 151 YLASVQGDL----------------RLYASGAFSVILPILEPSSIRGDLGVRSKIDTRGK 194
Query: 356 --AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
A +IE G+ R KI LTGRTHQ+R L+A G PIVG+ +Y
Sbjct: 195 FSATTIEILGYNPRTNQTHLKITPLTGRTHQIRLHLSALGFPIVGEPLY 243
>gi|302307964|ref|NP_984770.2| AEL091Cp [Ashbya gossypii ATCC 10895]
gi|299789245|gb|AAS52594.2| AEL091Cp [Ashbya gossypii ATCC 10895]
Length = 609
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R + + +V+DKP+G T S + LG T + +++D T G +
Sbjct: 190 RTVYEDDDILVIDKPSGIPAHPTGRYRFNSITKILEKQLGYT--VHPCNRLDRLTSGLMF 247
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LA+T + +++ ++VKK Y+A P+G + M I P+L
Sbjct: 248 LAKTPKGADEMGDQMKAREVKKEYVARVVGEFPIGEIVVDMPLKTIEPKLALN------- 300
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
M C P +A G + + + +C+ TGRTHQ+R L G PI
Sbjct: 301 --MVCD--PEDEAGKGAKTQFKRISYDGQTSIVKCQP--YTGRTHQIRVHLQYLGFPIAN 354
Query: 399 DSMY 402
D +Y
Sbjct: 355 DPIY 358
>gi|414161165|ref|ZP_11417428.1| RluA family pseudouridine synthase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876844|gb|EKS24742.1| RluA family pseudouridine synthase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 275
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ + R + E ++ ++Y A+ + LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKLLDRMLEENQISRIYKAVVKSLLP-------LKPQTIDK 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + + +C E IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHPNRRRVSPTGQQAITHILDARMLKENEC---------ELDIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQL 410
LAA G P++GD +Y + + QL
Sbjct: 226 VHLAAIGHPVIGDPLYGDSKLRQL 249
>gi|297172314|gb|ADI23291.1| pseudouridylate synthases, 23S RNA-specific [uncultured
actinobacterium HF0770_13M05]
Length = 244
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II E +VL+KP G +V G + I R H++D T GC+++
Sbjct: 34 IIYEDEELLVLNKPVGVAVHGGS-GIRHGIIEIL-RQTRSDVAFELVHRLDRDTSGCMLI 91
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT--HYMRPINIAPRLVSEGWYLCQ 337
A+T+ H RE +VKK Y A+ P G+ T H +R + G +
Sbjct: 92 AKTRRMLLELHAAFREARVKKRYDAVVAGDWPQGLRTVRHSLRRHTL-----QSGERRVR 146
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWP-SRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+++ K + ++ G +R + Y TGRTHQ+R AA G +
Sbjct: 147 IDLHGDK--------ARTDFEVQQRGARVTRLWVYPH-----TGRTHQIRVHAAAEGHAV 193
Query: 397 VGDSMYMPAAIAQLSSP 413
VGD+ Y QL+ P
Sbjct: 194 VGDNKY------QLNGP 204
>gi|30019444|ref|NP_831075.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|229126707|ref|ZP_04255719.1| Pseudouridine synthase [Bacillus cereus BDRD-Cer4]
gi|229143996|ref|ZP_04272412.1| Pseudouridine synthase [Bacillus cereus BDRD-ST24]
gi|29894988|gb|AAP08276.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|228639393|gb|EEK95807.1| Pseudouridine synthase [Bacillus cereus BDRD-ST24]
gi|228656647|gb|EEL12473.1| Pseudouridine synthase [Bacillus cereus BDRD-Cer4]
Length = 307
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 47/245 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLCQ 337
SI R + E+K+K+ Y AL + +G H+ I+P+
Sbjct: 157 SIMDRLLMERKIKRTYAALVEGKVKKKQGKIDAAIGRDRHHATRRRISPK---------- 206
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D + Y +E + ++ + ++L TGRTHQ+R ++ G P+V
Sbjct: 207 -----------GDQAI-TYYKVEKY-FKKQNTTF-VTLQLETGRTHQIRVHMSHNGNPLV 252
Query: 398 GDSMY 402
GD +Y
Sbjct: 253 GDVLY 257
>gi|333994154|ref|YP_004526767.1| ribosomal large subunit pseudouridine synthase family protein
[Treponema azotonutricium ZAS-9]
gi|333736031|gb|AEF81980.1| ribosomal large subunit pseudouridine synthase family protein
[Treponema azotonutricium ZAS-9]
Length = 215
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP------VGIMTHYMR 320
H++D GC++LA+T E + + + V+K Y A+ AP P G +TH++
Sbjct: 36 HRLDMPVSGCLLLAQTPEARAFLFDAFKTRNVEKRYWAVVEAPAPDKIPPDSGELTHWLM 95
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
+ ++ G +E KK Y I G D+ +I+LLTG
Sbjct: 96 TDTKRNKSLAYG-----VEKKGSKKA-------SLRYRIAGRG----DHYLFMEIELLTG 139
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+RAQLAA G I GD Y
Sbjct: 140 RHHQIRAQLAALGLHIKGDVKY 161
>gi|387122000|ref|YP_006287883.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756058|ref|ZP_11480968.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416038207|ref|ZP_11574067.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429732211|ref|ZP_19266829.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995149|gb|EGY36360.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655896|gb|EGY71322.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876492|gb|AFI88051.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429156838|gb|EKX99458.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans Y4]
Length = 225
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV D+ + ++ LG+ + H++D T G ++LA ++
Sbjct: 13 IVINKPTGISV--HKDDADIGLTRLVAQQLGVPQ-VWLVHRLDKVTSGLLMLALNEQTAV 69
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+K +++K YLALTT +P R+ + + + ++
Sbjct: 70 TLSQKFAHHQIQKTYLALTT-----------HKPKKKQGRISGD--------MQKARRGA 110
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAPIVGDSMY 402
W + ++ D + SR A ++ +L TG+THQ+R + + G+PI+GD++Y
Sbjct: 111 WKLTQSKENPAVTD--FVSRSLAPNLRLFILQPKTGKTHQLRVAMKSLGSPILGDALY 166
>gi|319956455|ref|YP_004167718.1| pseudouridine synthase [Nitratifractor salsuginis DSM 16511]
gi|319418859|gb|ADV45969.1| pseudouridine synthase [Nitratifractor salsuginis DSM 16511]
Length = 243
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 48/194 (24%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ +II E V ++KPA D+ E A ++ L H++D T G
Sbjct: 55 DVKIIYQDEQVVAVNKPA------FIDSYEIEEAIEGAQLL---------HRLDRDTSGV 99
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLA----LTTAPLPVGIMTHYMRPINIAPRLVSEG 332
++LAR + + R++KV K Y+A + P + + H + +G
Sbjct: 100 LLLARDEAFAKKAIEAFRQRKVHKEYVAWVEGVVVEPFEIDLPIH----------TIKKG 149
Query: 333 WYLCQLEVMECK----KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
+++ K KV WPD GK + +I++ TGRTHQ+R
Sbjct: 150 KAFSKIDKKLGKPALTKV-WPDEVQGKKSKV--------------RIEIETGRTHQIRVH 194
Query: 389 LAACGAPIVGDSMY 402
LA G PIVGD Y
Sbjct: 195 LAHVGHPIVGDEQY 208
>gi|229043131|ref|ZP_04190856.1| Pseudouridine synthase [Bacillus cereus AH676]
gi|423643563|ref|ZP_17619181.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|423647320|ref|ZP_17622890.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
gi|228726190|gb|EEL77422.1| Pseudouridine synthase [Bacillus cereus AH676]
gi|401274143|gb|EJR80121.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|401286138|gb|EJR91971.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
Length = 307
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 49/246 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR-------FPRCYDIDWNSRIIAVTE 225
KG TV Q+ + +++++ L+VH+ + + + + + ++ V +
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEEEYGVDPEYGELHVVYEDDHVLIVNK 99
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 100 PEQMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIA 155
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLC 336
SI R + E+K+K+ Y AL + +G H+ I+P+
Sbjct: 156 GSIMDRLLMERKIKRTYAALVEGKVKKKQGKIDAAIGRDRHHATRRRISPK--------- 206
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
D + Y +E + + ++L TGRTHQ+R ++ G P+
Sbjct: 207 ------------GDQAI-TYYKVEK--YFKKQNTTLVTLQLETGRTHQIRVHMSHNGNPL 251
Query: 397 VGDSMY 402
VGD +Y
Sbjct: 252 VGDVLY 257
>gi|387131884|ref|YP_006297857.1| RNA pseudouridine synthase [Prevotella intermedia 17]
gi|386374732|gb|AFJ07584.1| RNA pseudouridine synthase [Prevotella intermedia 17]
Length = 222
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP--LPVGIMTHYMR 320
L H++D G VV A+T + S + R+ +VKK Y A+ P P G +T+++
Sbjct: 51 LGVVHRLDRPVSGLVVFAKTSKALSRLNDMFRKGEVKKTYWAMVQTPPAEPEGTLTNWL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK T+G+ ++ ++ LLTG
Sbjct: 110 ----VRNEKQNKSYAYDHEVPNAKKAILKYKTIGQT-----------EHYTLLEVNLLTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QL+A G PI GD Y
Sbjct: 155 RHHQIRCQLSAIGCPIKGDLKY 176
>gi|423654172|ref|ZP_17629471.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
gi|401296639|gb|EJS02256.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
Length = 307
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 49/246 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR-------FPRCYDIDWNSRIIAVTE 225
KG TV Q+ + +++++ L+VH+ + + + + + ++ V +
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEEEYGVDPEYGELHVVYEDDHVLIVNK 99
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 100 PEQMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIA 155
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLC 336
SI R + E+K+K+ Y AL + +G H+ I+P+
Sbjct: 156 GSIMDRLLMERKIKRTYAALVEGKVKKKQGKIDAAIGRDRHHATRRRISPK--------- 206
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
D + Y +E + + ++L TGRTHQ+R ++ G P+
Sbjct: 207 ------------GDQAI-TYYKVEK--YFKKQNTTLVTLQLETGRTHQIRVHMSHNGNPL 251
Query: 397 VGDSMY 402
VGD +Y
Sbjct: 252 VGDVLY 257
>gi|317503596|ref|ZP_07961617.1| ribosomal large subunit pseudouridine synthase [Prevotella salivae
DSM 15606]
gi|315665288|gb|EFV04934.1| ribosomal large subunit pseudouridine synthase [Prevotella salivae
DSM 15606]
Length = 221
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT--TAPLPVGIMTHYMR 320
L H++D G VV A+T + + ++ RE +V K Y ALT P +T+++
Sbjct: 51 LGVVHRLDRPVSGLVVFAKTSKALTRLNKMFREGEVHKTYWALTKNNPSQPEATLTNWL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA--YSIEDCGWPSRDYAYECKIKLL 378
Y+ EV KK +G++ YS+ ++ L+
Sbjct: 110 ----VRNEKQNKSYVYDHEVPRSKKAILSYRVIGRSEHYSL-------------LEVNLM 152
Query: 379 TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSP 413
TGR HQ+R+QLAA G PI GD Y AQ S+P
Sbjct: 153 TGRHHQIRSQLAAMGCPIKGDLKYG----AQRSNP 183
>gi|163745572|ref|ZP_02152932.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
gi|161382390|gb|EDQ06799.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
Length = 348
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL--RTTHQIDNCTEGCV 277
+I E + L+KP G +V G + + S AL R H++D T G +
Sbjct: 93 VIYRDEHVIALNKPPGLAVQGGSGQADRHVDAL-SEALIFDAEEKPRLVHRLDRDTSGVL 151
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY--L 335
+LART+ +R ++ +K+Y A+ G+ T Y+ + LV G +
Sbjct: 152 LLARTRLAAKALTAAMRHRETRKIYWAIV-----AGVPTPYLGEVKYG--LVKAGGHGRS 204
Query: 336 CQLEVMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+ E M DAT G +A+++ + A ++ +TGRTHQ+RA +A G
Sbjct: 205 GEGEKMIAVHPRDMDATPGAKRAHTLYATLFRVGSRASWVAMEPVTGRTHQLRAHMAEIG 264
Query: 394 APIVGDSMY 402
PIVGD Y
Sbjct: 265 HPIVGDGKY 273
>gi|156742179|ref|YP_001432308.1| pseudouridine synthase [Roseiflexus castenholzii DSM 13941]
gi|156233507|gb|ABU58290.1| pseudouridine synthase [Roseiflexus castenholzii DSM 13941]
Length = 309
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 228 VVLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ LDKP T V T ++ + A F G PL H++D T G ++L++
Sbjct: 85 IALDKPIDTYVEATPWDAEGHLRAALAHFLEVRDGSAPPLHLAHRLDRDTSGVLLLSKAP 144
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLP----VGIMTHYMRPINIAPRLVSEGWYLCQLE 339
+ + R RE V+K YLAL A LP + I T + R G
Sbjct: 145 DVNAALQRAFREGAVRKTYLAL-CAGLPAFDEIEIETGHGR---------GRGGVFRVFP 194
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
E + TV + D A C LTGRTHQ+R LA G P++GD
Sbjct: 195 HEEIGRALPQGGTVKAMRTRLRVVRRMDDAALACATP-LTGRTHQIRLHLAFLGHPLIGD 253
Query: 400 SMY 402
Y
Sbjct: 254 VKY 256
>gi|307946319|ref|ZP_07661654.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
gi|307769983|gb|EFO29209.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
Length = 333
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++ ++HV VL+KPAG +V G + + + H++D T G ++
Sbjct: 97 MMLFEDNHVMVLNKPAGLAVQGGSGLKRHLDGMLEAYTNKKGEKPKLVHRLDRETSGIIL 156
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA-LTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+A+T++ + R + +K+Y A L P P H R +S YL +
Sbjct: 157 VAKTRKAAQELTKAFRHRNTRKIYWAMLAGVPKP-----HQGR--------IST--YLAR 201
Query: 338 LEVMECKKVP-WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
E ME +V D A S+ S +K +TGRTHQ+RA A G PI
Sbjct: 202 SEEMERMRVARHGDDEAQHAVSLYSVFEKSAQKLSWVTLKPVTGRTHQLRAHAAHIGHPI 261
Query: 397 VGDSMYM 403
+GD Y
Sbjct: 262 IGDDKYF 268
>gi|282852992|ref|ZP_06262329.1| RNA pseudouridine synthase [Propionibacterium acnes J139]
gi|422389356|ref|ZP_16469453.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL103PA1]
gi|422457704|ref|ZP_16534362.1| RNA pseudouridine synthase [Propionibacterium acnes HL050PA2]
gi|422463375|ref|ZP_16539988.1| RNA pseudouridine synthase [Propionibacterium acnes HL060PA1]
gi|422466526|ref|ZP_16543088.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA4]
gi|422468247|ref|ZP_16544778.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA3]
gi|282582445|gb|EFB87825.1| RNA pseudouridine synthase [Propionibacterium acnes J139]
gi|314982992|gb|EFT27084.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA3]
gi|315091497|gb|EFT63473.1| RNA pseudouridine synthase [Propionibacterium acnes HL110PA4]
gi|315094599|gb|EFT66575.1| RNA pseudouridine synthase [Propionibacterium acnes HL060PA1]
gi|315105253|gb|EFT77229.1| RNA pseudouridine synthase [Propionibacterium acnes HL050PA2]
gi|327328883|gb|EGE70643.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL103PA1]
Length = 281
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 23 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 76
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 77 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 135
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 136 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 186
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+ A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 187 GVPNTVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 236
>gi|414156413|ref|ZP_11412715.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410870060|gb|EKS18019.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 287
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 34/147 (23%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL---------PVGIMTH 317
H++D T G ++ A+ I +R + +KK+++ Y AL L +G H
Sbjct: 127 HRLDKETSGAILFAKNPFILPILNRILEDKKIQREYWALIQGSLRQKTIIYKDKIGRDRH 186
Query: 318 YMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 377
R + PR +G Y + +V + KK+ R+ +C++K
Sbjct: 187 DRRKRLVDPR---KGQY-AETQVTQLKKI-------------------GRNSLVKCQLK- 222
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMP 404
TGRTHQ+R L+ G PIVGD +Y P
Sbjct: 223 -TGRTHQIRVHLSHHGHPIVGDPLYNP 248
>gi|114320585|ref|YP_742268.1| ribosomal large subunit pseudouridine synthase C [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226979|gb|ABI56778.1| ribosomal large subunit pseudouridine synthase C [Alkalilimnicola
ehrlichii MLHE-1]
Length = 327
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 18/193 (9%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+ RI+ + +V+DKP+G +V G + + +A L H++D T
Sbjct: 95 ELAQRILYEDDRLLVIDKPSGLAVHGGS-GLAWGLIEVLRQARPSAPFLELVHRLDRATS 153
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
GC+++A+ + H ++R V K YLAL T L G PI + L
Sbjct: 154 GCLMVAKRRSALRELHEQLRTGAVHKRYLALLTGALGRG-------PIPVEAPLERRSGP 206
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ V K+ TV +A + P E I TGRTHQ+R A G
Sbjct: 207 AGGVRVASHGKLAR---TVFRAVA-----RPGGMTLAEADIA--TGRTHQIRVHAAHLGM 256
Query: 395 PIVGDSMYMPAAI 407
PI GD Y A+
Sbjct: 257 PIAGDDRYGERAV 269
>gi|53804453|ref|YP_113936.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
gi|53758214|gb|AAU92505.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
Length = 316
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 42/205 (20%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+RI+ E +V++KPAG +V GG+ A+R L H++D T GC
Sbjct: 92 NRILHEDEDLLVVNKPAGMAVHGGSGLRFGVIEGLRAAREDARF--LELVHRLDRDTSGC 149
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H + R + V K YLAL APL ++ R + I+
Sbjct: 150 LLIAKRRSALRQLHEQFRGEGVDKTYLALFSGVWARRRQVVDAPLLKNVLQSGERMVKIS 209
Query: 326 PRLVSEGWYLCQLEVMECKKV-PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
SEG + + E +++ P AT+ +A + TGRTHQ
Sbjct: 210 ----SEG----KAAITEFRRLEPLSGATLVEARPV-------------------TGRTHQ 242
Query: 385 VRAQLAACGAPIVGDSMYMPAAIAQ 409
+R + G P+ GD Y ++ Q
Sbjct: 243 IRVHARSLGHPLAGDERYGDPSLNQ 267
>gi|402306779|ref|ZP_10825817.1| rRNA pseudouridylate synthase C [Haemophilus sputorum HK 2154]
gi|400374207|gb|EJP27128.1| rRNA pseudouridylate synthase C [Haemophilus sputorum HK 2154]
Length = 320
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 28/209 (13%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALG-LTTPLRTTHQIDNC 272
+ +I+ E +V++KP+G +V GG+ N A RAL L H+ID
Sbjct: 93 ELEQQILYEDEVLLVINKPSGIAVHGGSGLNF---GVIEALRALRPQARFLELVHRIDRD 149
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G +++ I AP L +E
Sbjct: 150 TSGILLVAKKRSALRHLHEQLREKTVQKDYLALVR-----GQWQSHVKAIK-APLLKNE- 202
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC---KIKLLTGRTHQVRAQ 388
L E +++ + P T + IE+ Y E K +TGRTHQ+R
Sbjct: 203 --LASGERIVKVSEAGKPSET---RFQIEE------RYGQEATLVKASPVTGRTHQIRVH 251
Query: 389 LAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A A++ + GLN
Sbjct: 252 TQYAGHPIACDDKYGEAEFDAKMQTLGLN 280
>gi|399077421|ref|ZP_10752399.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
gi|398035490|gb|EJL28731.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
Length = 329
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 22/233 (9%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV--------LDKPAGTSVGG 240
D + AG +RV P + + R IA +S V+ L+KPAG +V G
Sbjct: 52 ADTKLAAGAQIRVPPLPDAPDPNEKLALSKRDIAFAKSLVLYEDEEVLALNKPAGLAVQG 111
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
T ++ G+ P + H++D T G ++L +T + ++ +K
Sbjct: 112 GTKTTHHIDKLLSAWGEGVNRP-KLVHRLDRDTSGVLLLGKTPGAAAKLSGAFARRRAQK 170
Query: 301 LYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSI 359
Y A+ P P T + +++A R V + + E + P V + +
Sbjct: 171 TYWAIVAGNPHP----TEGVIELHLAKRGVGDRELVVPAEPKDPDAQPAETEFVSISRAG 226
Query: 360 EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
W ++ TGRTHQ+RA + A G PI+GD Y QLS
Sbjct: 227 PRVTW--------MALRPHTGRTHQLRAHMKAIGHPILGDPKYSDEKALQLSE 271
>gi|296501973|ref|YP_003663673.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|296323025|gb|ADH05953.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
Length = 307
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 47/245 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLCQ 337
SI R + E+K+K+ Y AL + +G H+ I+P+
Sbjct: 157 SIMDRLLMERKIKRTYAALVEGKVKKKQGKIDAAIGRDRHHATRRRISPK---------- 206
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D + Y +E + ++ + ++L TGRTHQ+R ++ G P+V
Sbjct: 207 -----------GDQAI-TYYKVEKY-FKKQNTTF-VTLQLETGRTHQIRVHMSHNGNPLV 252
Query: 398 GDSMY 402
GD +Y
Sbjct: 253 GDVLY 257
>gi|294628458|ref|ZP_06707018.1| RNA pseudouridylate synthase [Streptomyces sp. e14]
gi|292831791|gb|EFF90140.1| RNA pseudouridylate synthase [Streptomyces sp. e14]
Length = 324
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 26/227 (11%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D E G ++ H + P + + ++ E VV+DKP + ++ E+
Sbjct: 77 DAPYEPGMFVWFH---RELPAETPVPFPLVVVHRDEHIVVVDKPHFLATTPRGSHVTETA 133
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
R L L T L H++D T G V+ E + R+++V+K Y A+ AP
Sbjct: 134 LARLRRELDLPT-LGAAHRLDRLTAGLVLFTVRPEERGAYQTLFRDRRVRKEYEAV--AP 190
Query: 310 LPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDY 369
+ P + R+V E V+ ++VP G+ ++ D R
Sbjct: 191 YDPDLAL----PRTVRSRIVKE------RGVLTAEEVP------GEPNAVTDVELVGRRP 234
Query: 370 AYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
+ +L TG+THQ+R + A G PI+GD +Y A+ PG
Sbjct: 235 GGPARYRLTPRTGQTHQLRVHMNALGVPILGDPLY--PAVTPDGPPG 279
>gi|291523779|emb|CBK89366.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
rectale DSM 17629]
Length = 241
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI----------MT 316
H++D EG +V A+ Q+ + R+I+E +K Y A + G +T
Sbjct: 55 HRLDQPVEGVMVFAKNQKAAASLSRQIKEHTTEKYYRAASRGQGVSGTAVEEEEAWHTLT 114
Query: 317 HYM---RPINIAPRLVSEGWYLCQLEVMECKKVP-WPDATVGKAYSIEDCGWPSRDYAYE 372
Y+ + N + ++ SE L + V++ + + PD G+ + E
Sbjct: 115 DYISFDKRTNTS-KITSEKDRLAKKAVLQYRVISVTPDRD----------GFKNECIRTE 163
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
IKLLTGR HQ+R QLA G P++GD+ Y
Sbjct: 164 FDIKLLTGRHHQIRLQLANIGYPLIGDTKY 193
>gi|81429051|ref|YP_396051.1| pseudouridine synthase [Lactobacillus sakei subsp. sakei 23K]
gi|78610693|emb|CAI55744.1| Pseudouridine synthase, 23S-rRNA-specific [Lactobacillus sakei
subsp. sakei 23K]
Length = 306
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 23/189 (12%)
Query: 221 IAVTESH-VVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRTTHQIDNCTEG 275
IA + H +++DKPA + ++ + A F + L + + ++D T G
Sbjct: 80 IAYEDDHFLIVDKPAFVASLPAPNHPNNTMANFVKQYLIDEQAESLAVHVVTRLDRDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVSEGW 333
++ + S+ R+++ K+++K Y+A+ + + + H RPI SE +
Sbjct: 140 LMMFTKHGFAHSLLDRQLQSKELQKTYIAIASGDMREDLPQHAWIDRPIK-----RSEEF 194
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
Y+ ++ V E GK E D A K+KLLTGRTHQ+R A+ G
Sbjct: 195 YMRRV-VGEG----------GKRSLTEYWQAAHGDGATLVKLKLLTGRTHQIRVHFASLG 243
Query: 394 APIVGDSMY 402
++GD++Y
Sbjct: 244 HSLIGDNLY 252
>gi|386070496|ref|YP_005985392.1| putative RNA pseudouridylate synthase [Propionibacterium acnes ATCC
11828]
gi|353454862|gb|AER05381.1| putative RNA pseudouridylate synthase [Propionibacterium acnes ATCC
11828]
Length = 295
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 37 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 90
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 91 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 149
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L P G +T + R++ E +++ ++VP
Sbjct: 150 FERR---EVVKKYRLVAPVVHDPAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 200
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+ A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 201 GVPNTVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 250
>gi|322418067|ref|YP_004197290.1| RluA family pseudouridine synthase [Geobacter sp. M18]
gi|320124454|gb|ADW12014.1| pseudouridine synthase, RluA family [Geobacter sp. M18]
Length = 300
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 41/164 (25%)
Query: 255 RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
+++GL P R H++D T G + + ++ ++ ++E KV+K Y AL +
Sbjct: 119 KSIGLRDPSRVVHRLDRGTSGVMFFPKHKQAATLISNLLKEGKVQKTYWALVSG------ 172
Query: 315 MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGK-AYSIEDCGWPSRDY---- 369
+P +GW KV P VGK Y + G P+R
Sbjct: 173 ----------SPD--QQGW-----------KVDAPLDRVGKFRYGVSLRGKPARTVFSVL 209
Query: 370 -----AYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY--MPAA 406
+ K LTGRTHQ+R LA G PI+GD Y +PA+
Sbjct: 210 GEGKGVTVIEAKPLTGRTHQIRVHLAHSGFPIIGDESYGGIPAS 253
>gi|19921090|ref|NP_609411.1| RluA-2, isoform A [Drosophila melanogaster]
gi|442627330|ref|NP_001188782.2| RluA-2, isoform D [Drosophila melanogaster]
gi|16198203|gb|AAL13915.1| LD40728p [Drosophila melanogaster]
gi|22946170|gb|AAF52961.2| RluA-2, isoform A [Drosophila melanogaster]
gi|220946196|gb|ACL85641.1| RluA-2-PA [synthetic construct]
gi|220955960|gb|ACL90523.1| RluA-2-PA [synthetic construct]
gi|440213673|gb|ADV37032.2| RluA-2, isoform D [Drosophila melanogaster]
Length = 547
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 43/256 (16%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 176 LEAG---KLTVNSEKVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPA 232
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT E +IR
Sbjct: 233 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTAEKARELELQIR 291
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EVMECKKVPWPDAT 352
++V+K Y+ P GI+ N +VS +C++ + +CK
Sbjct: 292 TRQVQKEYVCRVEGRFPDGIVE-----CNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGE 346
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
VG + SI C K LTGR HQ+R L G PI D +Y L
Sbjct: 347 VG-SDSIVLC-------------KPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKG 392
Query: 413 PGLNPFGKCQKEYASD 428
G + G +++ S+
Sbjct: 393 RGGDIGGITEEQLISN 408
>gi|406936443|gb|EKD70162.1| hypothetical protein ACD_46C00616G0003 [uncultured bacterium]
Length = 322
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 84/215 (39%), Gaps = 52/215 (24%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
RI+ E ++++KP+G SV G T + A R + P L H++D+ T G
Sbjct: 98 DRILYEDEYLLIINKPSGMSVHAGNTVRV---GVVEALRHMFPKLPHLELAHRLDSETSG 154
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
C+VLA+ + H +RE KV K+Y ALT W
Sbjct: 155 CLVLAKRKRILRELHTLLREGKVNKIYWALTKGK-----------------------WKK 191
Query: 336 CQLEVMECKKVPW-PDATVGKAYSIE---------DCGWPSRDY--AYECKIKLLTGRTH 383
+L V +P D G + +E P ++ A ++KL TGRTH
Sbjct: 192 SELRV----DLPLHKDYRDGGKHVVEVNREGKSALTVFTPLNEFTSASLMEVKLYTGRTH 247
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
Q+R G PI GD Y P N F
Sbjct: 248 QIRVHAKHQGHPIAGDDRY--------GDPEFNKF 274
>gi|374107989|gb|AEY96896.1| FAEL091Cp [Ashbya gossypii FDAG1]
Length = 609
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R + + +V+DKP+G T S + LG T + +++D T G +
Sbjct: 190 RTVYEDDDILVIDKPSGIPAHPTGRYRFNSITKILEKQLGYT--VHPCNRLDRLTSGLMF 247
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LA+T + +++ ++VKK Y+A P+G + M I P+L
Sbjct: 248 LAKTPKGADEMGDQMKAREVKKEYVARVVGEFPIGEVVVDMPLKTIEPKLALN------- 300
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
M C P +A G + + + +C+ TGRTHQ+R L G PI
Sbjct: 301 --MVCD--PEDEAGKGAKTQFKRISYDGQTSIVKCQP--YTGRTHQIRVHLQYLGFPIAN 354
Query: 399 DSMY 402
D +Y
Sbjct: 355 DPIY 358
>gi|195339845|ref|XP_002036527.1| GM11650 [Drosophila sechellia]
gi|194130407|gb|EDW52450.1| GM11650 [Drosophila sechellia]
Length = 739
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 377 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 435
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
R+ + ++IR ++V+K Y+ P GI+ PI +
Sbjct: 436 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV-ECKEPIEV-----------VSY 483
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
++ CK P + G S CK LTGR HQ+R L G PI+
Sbjct: 484 KIGVCKVSPKGKDCTTTFQKLSQNGTTS---VVLCKP--LTGRMHQIRVHLQYLGYPILN 538
Query: 399 DSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y L + GK +E D
Sbjct: 539 DPLYNHEVFGPLKGRSGDIGGKSDEELIRD 568
>gi|384179325|ref|YP_005565087.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324325409|gb|ADY20669.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 307
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 51/247 (20%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+I R + E+K+K+ Y AL T +G H+ ++P+
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPK-------- 206
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
D + Y +E + + ++L TGRTHQ+R ++ G P
Sbjct: 207 -------------GDQAI-TYYKVEK--YFRKQNVTLVTLQLETGRTHQIRVHMSYNGNP 250
Query: 396 IVGDSMY 402
+VGD +Y
Sbjct: 251 LVGDVLY 257
>gi|320544926|ref|NP_001188783.1| RluA-2, isoform C [Drosophila melanogaster]
gi|318068417|gb|ADV37033.1| RluA-2, isoform C [Drosophila melanogaster]
Length = 543
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 43/256 (16%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 176 LEAG---KLTVNSEKVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPA 232
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT E +IR
Sbjct: 233 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTAEKARELELQIR 291
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EVMECKKVPWPDAT 352
++V+K Y+ P GI+ N +VS +C++ + +CK
Sbjct: 292 TRQVQKEYVCRVEGRFPDGIVE-----CNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGE 346
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
VG + SI C K LTGR HQ+R L G PI D +Y L
Sbjct: 347 VG-SDSIVLC-------------KPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKG 392
Query: 413 PGLNPFGKCQKEYASD 428
G + G +++ S+
Sbjct: 393 RGGDIGGITEEQLISN 408
>gi|423335053|ref|ZP_17312831.1| pseudouridylate synthase [Lactobacillus reuteri ATCC 53608]
gi|337728574|emb|CCC03680.1| pseudouridylate synthase [Lactobacillus reuteri ATCC 53608]
Length = 306
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 228 VVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V++KP G + G T + A + + + H+ID T G V++A+
Sbjct: 98 LVVNKPRGQKTHPNYHGETGTLMNDVAGYLAHS---QKNAYMVHRIDLQTSGAVIVAKNP 154
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
I +R I + ++ + YLA+ + ++ I P E YL Q+
Sbjct: 155 IVVPILNRLISDGQIHRQYLAVVEGEMAQSGKFDWV--IGRNP----ENPYLHQVNGQNA 208
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYM 403
+ A + D +R+ + K++L+TGRTHQ+R LA G PIVGD +Y
Sbjct: 209 QP----------ALTYYDTLASNRERSL-VKLRLVTGRTHQLRVHLAYSGHPIVGDPLYN 257
Query: 404 PAAIAQLSSPGLNPFGKCQK 423
P LS+ G+ G QK
Sbjct: 258 P-----LSTEGMLLHGVSQK 272
>gi|39995777|ref|NP_951728.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
PCA]
gi|409911220|ref|YP_006889685.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
KN400]
gi|39982541|gb|AAR34001.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
PCA]
gi|298504786|gb|ADI83509.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
KN400]
Length = 296
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 37/179 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
V+++KPAG V T + E + A + G LR +++D T G +LA++
Sbjct: 88 VIVNKPAGLPVHRTAEAGEANLVELAEHFMAGRGTAVKLRPVNRLDRGTSGATILAKSSS 147
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ R ++E+ + KLYLA+T LP G L+ +
Sbjct: 148 SAGMLGRYVKEEGLDKLYLAVTDGSLP------------------DAGTIDTPLDGKDAH 189
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL-LTGRTHQVRAQLAACGAPIVGDSMY 402
D +RD A + + ++GR HQ+R L+A G P+ GD Y
Sbjct: 190 T---------------DFRTLARDTAVSFALVIPISGRMHQIRKHLSAIGHPVRGDRRY 233
>gi|374332189|ref|YP_005082373.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359344978|gb|AEV38352.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)
Query: 218 SRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+++ +SHV VL+KPAG +V G + +++ F ++ R H++D T
Sbjct: 111 EQMMLFEDSHVMVLNKPAGLAVQGGSGLKRHVDGMLDAFTNQK---GDKPRLVHRLDRET 167
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G +++A+T+ + R + +K+Y A+ A +P PR
Sbjct: 168 SGILLVAKTRRAAQELTKAFRHRNTRKIYWAMV-AGVP-------------KPRQGRIST 213
Query: 334 YLCQLEVMECKKVPW-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
YL + E E +V D A S+ + S +K +TGRTHQ+RA A
Sbjct: 214 YLARDEGEERMRVARHGDDEAQHAVSLYNVVEQSGQKLSWVTLKPVTGRTHQLRAHSAHI 273
Query: 393 GAPIVGDSMYM 403
G PI+GD Y
Sbjct: 274 GHPIIGDPKYF 284
>gi|237747439|ref|ZP_04577919.1| pseudouridine synthase [Oxalobacter formigenes HOxBLS]
gi|229378790|gb|EEO28881.1| pseudouridine synthase [Oxalobacter formigenes HOxBLS]
Length = 318
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 21/205 (10%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
P + + ++ E VV DKP V + + E+ + LG+ + L H
Sbjct: 85 LPNEWKNPFQETVLYQDEWLVVADKPHFLPVTPSGKYVRETLLVRLKQKLGIDS-LTPVH 143
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
+ID T G V+ + E +++ R RE V K Y A+ AP + P+ R
Sbjct: 144 RIDRETAGLVLFSTKPEGRNLYQRLFRENLVSKHYEAI--APYRDDLSF----PLRYKSR 197
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
LV +G +++ + K P + + + + G ++K +TGR HQ+R
Sbjct: 198 LV-QGDSFMRMQTVSGK--PNAETEIRLLQQLGEWG--------HYRLKPVTGRKHQLRV 246
Query: 388 QLAACGAPIVGDSMY---MPAAIAQ 409
Q+ + G PI+ D +Y P A+ Q
Sbjct: 247 QMCSLGIPILNDRIYPDHFPEAVTQ 271
>gi|253702213|ref|YP_003023402.1| pseudouridine synthase [Geobacter sp. M21]
gi|251777063|gb|ACT19644.1| pseudouridine synthase, RluA family [Geobacter sp. M21]
Length = 297
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 57/213 (26%)
Query: 255 RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA------ 308
+++GL P R H++D T G + + ++ ++ +++ KV+K Y AL +
Sbjct: 119 KSIGLRDPSRVVHRLDRGTSGVMFFPKHKQAATLISNLLKDGKVQKTYWALVSGSPDQQS 178
Query: 309 ---PLPVGIMTHYM-------RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYS 358
P+G ++ + +P R+V EG + +E
Sbjct: 179 WKVEAPLGKVSKFKYGVALNGKPARTLFRVVGEGAGVTAVEA------------------ 220
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY--MPAAIAQLSSPGL- 415
K LTGRTHQ+R LA G PI+GD Y +PAA L G+
Sbjct: 221 -----------------KPLTGRTHQIRVHLAYSGFPIIGDETYGGIPAARMMLHCRGMR 263
Query: 416 --NPFGKCQKEYA-SDDDKEMAVIEWISQHGME 445
GK + +A +D D A E I + E
Sbjct: 264 FTGAKGKVIEAFAPADADFRAAATEGIWEESAE 296
>gi|451334113|ref|ZP_21904694.1| Ribosomal large subunit pseudouridine synthase A [Amycolatopsis
azurea DSM 43854]
gi|449423369|gb|EMD28704.1| Ribosomal large subunit pseudouridine synthase A [Amycolatopsis
azurea DSM 43854]
Length = 290
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 18/197 (9%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+ P D+ ++ ++ E ++ DKP + +I ++ R L L T L
Sbjct: 58 RDLPDEVDVPFDVSVVHRDEHFLIADKPHFLATIPRGQHILQTALVRLRRELDLPT-LVP 116
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G ++ T E + R++ V K Y A+ + + P I+
Sbjct: 117 AHRLDRVTAGLILFVITPEVRGKYQTMFRDRLVHKEYEAIARYDPDIAM------PREIS 170
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
R+V E V+ ++V P + IE RD ++ TGRTHQ+
Sbjct: 171 SRIVKERG------VIAAQEVDGPPNAETRVELIE-----HRDGLGRYRLLPATGRTHQL 219
Query: 386 RAQLAACGAPIVGDSMY 402
R ++ G PI+GD Y
Sbjct: 220 RLHMSGLGLPILGDDFY 236
>gi|240949536|ref|ZP_04753876.1| RNA pseudouridine synthase [Actinobacillus minor NM305]
gi|240296109|gb|EER46770.1| RNA pseudouridine synthase [Actinobacillus minor NM305]
Length = 212
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV DN ++ LG+ + H++D T G ++LA T+E
Sbjct: 15 IVINKPEGVSVH--KDNEASGLTERIAQQLGVPQ-IWLVHRLDKATSGLLILALTKEAAV 71
Query: 288 IFHRKIREKKVKKLYLAL-TTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
F+ ++ K++K Y AL TT P + I + + W LC +
Sbjct: 72 EFYHLFKQHKIQKTYWALSTTKP-----KKKQGKIIGDMKKSRNSAWKLCHTKEN----- 121
Query: 347 PWPDATVGKAYSIE-DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P T + S+ W + + TGRTHQ+R + + G+PI+GDS+Y
Sbjct: 122 --PAITQFTSQSVAPQLRWFT--------LNPHTGRTHQLRVAMRSLGSPILGDSLY 168
>gi|406881564|gb|EKD29593.1| hypothetical protein ACD_78C00346G0006, partial [uncultured
bacterium (gcode 4)]
Length = 324
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA--LTTAPLPVGIMTHYMRPINI 324
H+ID T G V++A+T+ ++ K++K+YLA L T P G++ +R +
Sbjct: 148 HRIDKDTSGIVMIAKTKPSLDFMLNALQSNKIEKVYLAVCLGTPPETRGVIRRKLRRLEN 207
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
A R E + E T Y + + G + EC ++ TGR HQ
Sbjct: 208 AER---ENKIIIDDE---------GGQTAVTHYKVLETGIHGKYSLVECVLE--TGRMHQ 253
Query: 385 VRAQLAACGAPIVGDSMY 402
+R LA+ G P++GD+ Y
Sbjct: 254 IRVHLASIGCPVLGDTTY 271
>gi|373470885|ref|ZP_09561972.1| RNA pseudouridine synthase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371761507|gb|EHO50125.1| RNA pseudouridine synthase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 216
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + VV+ KP G + ++ EE + + LG + H++D G +V
Sbjct: 4 KILYEDKDIVVVVKPRGV-LSQSSSGFEEDMVSLLKKHLGRDGYIGVIHRLDKPVYGIMV 62
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP---VGIMTHYMRPINIAPRLVSEG--- 332
+ ++ I +++K + K+Y AL LP G +T +++ N ++++
Sbjct: 63 YGKNKKATDILCSDLKKKNIGKIYEALVEG-LPSEDTGRLTDFIKKENNNISMIADKNTK 121
Query: 333 ---WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+ + +V+E K D T +I LLTGR HQ+R Q
Sbjct: 122 DAKEAILEYKVVETKHSESKDIT-------------------RLRINLLTGRHHQIRLQC 162
Query: 390 AACGAPIVGDSMY 402
AA G P+ GD Y
Sbjct: 163 AAHGFPLFGDYKY 175
>gi|254470362|ref|ZP_05083766.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
gi|211960673|gb|EEA95869.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
Length = 349
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)
Query: 218 SRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+++ +SHV VL+KPAG +V G + +++ F ++ R H++D T
Sbjct: 111 EQMMLFEDSHVMVLNKPAGLAVQGGSGLKRHVDGMLDAFTNQK---GDKPRLVHRLDRET 167
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G +++A+T+ + R + +K+Y A+ A +P PR
Sbjct: 168 SGILLVAKTRRAAQELTKAFRHRNTRKIYWAMV-AGVP-------------KPRQGRIST 213
Query: 334 YLCQLEVMECKKVPW-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
YL + E E +V D A S+ + S +K +TGRTHQ+RA A
Sbjct: 214 YLARDEGEERMRVARHGDDEAQHAVSLYNVVEQSGQKLAWVTLKPVTGRTHQLRAHSAHI 273
Query: 393 GAPIVGDSMYM 403
G PI+GD Y
Sbjct: 274 GHPIIGDPKYF 284
>gi|195339847|ref|XP_002036528.1| GM18469 [Drosophila sechellia]
gi|194130408|gb|EDW52451.1| GM18469 [Drosophila sechellia]
Length = 537
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 43/256 (16%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 176 LEAG---KLTVNSEKVPKDYRIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPA 232
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT E +IR
Sbjct: 233 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTAEKARELELQIR 291
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EVMECKKVPWPDAT 352
++V+K Y+ P GI+ N +VS +C++ + +CK
Sbjct: 292 TRQVQKEYVCRVEGRFPDGIVE-----CNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGE 346
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
VG + SI C K LTGR HQ+R L G PI D +Y L
Sbjct: 347 VG-SDSIVLC-------------KPLTGRMHQIRVHLQYLGYPISNDPLYNHEVFGPLKG 392
Query: 413 PGLNPFGKCQKEYASD 428
G + G +++ S+
Sbjct: 393 RGGDIGGISEEQLISN 408
>gi|85710030|ref|ZP_01041095.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
gi|85688740|gb|EAQ28744.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
Length = 234
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 84/198 (42%), Gaps = 30/198 (15%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-----GGTT--DNIEESCATFASRALGLTTPLRTTHQI 269
N II +V+DKPAG V GG D+IE+ LG P H++
Sbjct: 2 NIPIIYEDGEALVIDKPAGLPVDRPKRGGPALFDHIEQL-------KLGFQRPPVPVHRL 54
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT--APLPVGIMTHYMRPINIAPR 327
D T GC++LAR + F++ ++ V K YLA+ G + + I+ A
Sbjct: 55 DTDTSGCLLLARNPKALKRFNKAFEDRLVGKTYLAVIDFEPSESSGTIELSLSKISSA-- 112
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+GW + + W IE G + + + + TGRTHQ+R
Sbjct: 113 --EKGWRMIAARKGKPAISHW--------ELIETIGEGDKKRSL-IRFRPETGRTHQLRV 161
Query: 388 Q-LAACGAPIVGDSMYMP 404
L GAP++GD +Y P
Sbjct: 162 HALQGLGAPLLGDPVYGP 179
>gi|340620679|ref|YP_004739132.1| tRNA pseudouridine synthase C [Zobellia galactanivorans]
gi|339735476|emb|CAZ98853.1| tRNA pseudouridine synthase C [Zobellia galactanivorans]
Length = 232
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 78/196 (39%), Gaps = 24/196 (12%)
Query: 215 DWNSRIIAVTESHVVL--DKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQ 268
D N+ ++ ++H+V +P G T ++ S P L H+
Sbjct: 8 DPNNLLVLFEDNHIVAINKRPGDIVQGDKTGDMPLSEVVKLYIKEKYDKPGNVYLGVAHR 67
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAP 326
+D T G VV A+T + ++ EK KK Y A+ +THY++ N
Sbjct: 68 LDRPTSGIVVFAKTSKALPRLNKLFAEKAAKKTYWAIVKNKPKKNEDTLTHYLKRNN--- 124
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
Y EV + KK + K D Y +I L TGR HQ+R
Sbjct: 125 --KQNKSYAHIKEVPDSKKAILDYRVIKKL-----------DRYYLLEIDLHTGRHHQIR 171
Query: 387 AQLAACGAPIVGDSMY 402
AQLAA G PI GD Y
Sbjct: 172 AQLAAIGCPIKGDLKY 187
>gi|300361154|ref|ZP_07057331.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
gasseri JV-V03]
gi|300353773|gb|EFJ69644.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
gasseri JV-V03]
Length = 285
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 29/182 (15%)
Query: 228 VVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+++DKPAG D CAT+ LG + P H++D T G +++A+
Sbjct: 95 LIIDKPAGQKTHPNLNEKDTALNDCATY----LGYS-PF-IVHRLDMLTNGLLLVAKNPA 148
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
I +R++ K + + YLA + + PI P + K
Sbjct: 149 VVPILNRQLTNKTLHREYLAWVSKSNQLKQSGTISLPIGHDPN-------------DQRK 195
Query: 345 KVPWPDATVGKAYS--IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++ PD + +++C + K+ L TGRTHQ+R LAA API+GD +Y
Sbjct: 196 RMVRPDGQKAITHYEIVKEC-----ENKALVKLTLETGRTHQIRVHLAALNAPIIGDPLY 250
Query: 403 MP 404
P
Sbjct: 251 NP 252
>gi|27904809|ref|NP_777935.1| ribosomal large subunit pseudouridine synthase D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|34395769|sp|Q89AH2.1|RLUC_BUCBP RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|27904207|gb|AAO27040.1| ribosomal large subunit pseudouridine synthase D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 315
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFA--SRALGLTTPLRTTHQ 268
I +N+ I+ ++L+KP+G SV G + E+ +R L L H+
Sbjct: 89 IIFNNMILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPYNRYLDLV------HR 142
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
+D T G +++A+ + H ++REKK+KK Y+AL P I+ +P
Sbjct: 143 LDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWP-DILKSISKP------- 194
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
L + + K + D GK SI + Y I + +TGRTHQ+R
Sbjct: 195 ------LLKTSSRKNKNIVKIDPK-GKE-SITHFNIKKK-YTKNTLISITPITGRTHQIR 245
Query: 387 AQLAACGAPIVGDSMY 402
L PIV D+ Y
Sbjct: 246 VHLLHLNYPIVLDAKY 261
>gi|237653101|ref|YP_002889415.1| pseudouridine synthase [Thauera sp. MZ1T]
gi|237624348|gb|ACR01038.1| pseudouridine synthase, RluA family [Thauera sp. MZ1T]
Length = 319
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 35/207 (16%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
++ E+ +V+DKP+G +V G + + L + P L H++D T G
Sbjct: 93 VVYEDEALLVIDKPSGKAVHGGS-----GVSYGVIEQLRVQRPELRMLELAHRLDRETSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALT----TAPLPVGIMTHYMRPINIAPRLVSE 331
+++A+ + + H +RE V+K YL L + PL H P++ L +E
Sbjct: 148 LLIVAKKRSALTALHDMMREGSVEKRYLTLVPGRWSNPL-----QHVKVPLH--KYLTAE 200
Query: 332 GWYLCQLEVMECKKVPWPDATVGKA-YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G ++ A GKA +SI RDY+ +++L TGRTHQ+R LA
Sbjct: 201 GERRVRV------------ADEGKAAHSIVRLVRRWRDYSL-LEVELKTGRTHQIRVHLA 247
Query: 391 ACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G + GD Y A+ +L GL
Sbjct: 248 HLGFALCGDDKYGDFALNKRLEVEGLR 274
>gi|220934527|ref|YP_002513426.1| RluA family pseudouridine synthase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995837|gb|ACL72439.1| pseudouridine synthase, RluA family [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 323
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 30/179 (16%)
Query: 231 DKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+KPAG +V G + + E+ RA L H++D T GC+VLA+ +E
Sbjct: 111 NKPAGLAVHGGSGVKLGLIEAMRRLRPRA----DFLELAHRLDRETSGCLVLAKRREALL 166
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG--WYLCQLEVMECKK 345
FH ++ V K Y+ L G P I+ L +G + ++EV E K
Sbjct: 167 AFHEALKSGGVDKHYVTLLAGVWQGG-------PRRISETLARKGPRTQVRKVEVDEDGK 219
Query: 346 VPWPDATVGKAYSIEDCGWPSRDY--AYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
E +P R + A +++ TGRTHQ+R A G P+ GDS Y
Sbjct: 220 ------------HAESFFFPRRHFVDATLMGVEIGTGRTHQIRVHAAHEGFPVAGDSQY 266
>gi|195578239|ref|XP_002078973.1| GD23709 [Drosophila simulans]
gi|194190982|gb|EDX04558.1| GD23709 [Drosophila simulans]
Length = 541
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 43/256 (16%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 176 LEAG---KLTVNSEKVPKDYRIKHNDLLANVVHRHEVPVTSQPIKIVFMDKDIVVVNKPA 232
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT E +IR
Sbjct: 233 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTAEKARELELQIR 291
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EVMECKKVPWPDAT 352
++V+K Y+ P GI+ N +VS +C++ + +CK
Sbjct: 292 TRQVQKEYVCRVEGRFPDGIVE-----CNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGE 346
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
VG + SI C K LTGR HQ+R L G PI D +Y L
Sbjct: 347 VG-SDSIVLC-------------KPLTGRMHQIRVHLQYLGYPISNDPLYNHEVFGPLKG 392
Query: 413 PGLNPFGKCQKEYASD 428
G + G +++ S+
Sbjct: 393 RGGDIGGISEEQLISN 408
>gi|184155038|ref|YP_001843378.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
gi|227514836|ref|ZP_03944885.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus fermentum
ATCC 14931]
gi|260663582|ref|ZP_05864471.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
gi|385812122|ref|YP_005848513.1| pseudouridine synthase [Lactobacillus fermentum CECT 5716]
gi|183226382|dbj|BAG26898.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
gi|227086826|gb|EEI22138.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus fermentum
ATCC 14931]
gi|260551808|gb|EEX24923.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
gi|299783021|gb|ADJ41019.1| Pseudouridine synthase [Lactobacillus fermentum CECT 5716]
Length = 296
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVG-----GTTDNIEESCATFASRALGLTTPLRTTH-- 267
D I E +V++K AG + D++ + R P + TH
Sbjct: 75 DQTFEIAYEDEDFLVINKEAGVATVPAHHVAVQDSLVNRVKGYYQRQ---NYPNQVTHVA 131
Query: 268 -QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR--PI 322
++D T G VV + + ++ R+++ ++VKK YLA+ L V G + +R P
Sbjct: 132 TRLDKDTSGLVVFPKHRFAHAVLDRQLKARQVKKEYLAMVQGRLTVSHGYIDAPIRRDPD 191
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR--DYAYECKIKLLTG 380
+ RLV+ PD GKA + E W R D +++L TG
Sbjct: 192 SFVKRLVA------------------PD---GKASATE--YWCERVTDTTSLVRVRLHTG 228
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQ+R + G P++GD MY
Sbjct: 229 RTHQIRVHFSFLGHPLLGDDMY 250
>gi|386390588|ref|ZP_10075373.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
paraphrohaemolyticus HK411]
gi|385692805|gb|EIG23475.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
paraphrohaemolyticus HK411]
Length = 214
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ V+++KPAG SV D ++ LG+ + H++D T G ++LA +E
Sbjct: 12 QDFVIINKPAGISV--HKDQQAVGLTELVAKQLGVEQ-VWLVHRLDKITSGLLILALNKE 68
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ F+ + K++K Y A++ + + + + W LC +
Sbjct: 69 AAANFYTLFEQHKIQKTYWAISDKK----PKKKQGKIVGDMQKSRNGTWKLCYSKEN--- 121
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P T ++SIE P R + + K TG+THQ+R + + G+PI+GDS+Y
Sbjct: 122 ----PAITQFSSHSIEP---PLRYFILQPK----TGKTHQLRVAMKSLGSPILGDSLY 168
>gi|309805370|ref|ZP_07699419.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
09V1-c]
gi|308165297|gb|EFO67531.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
09V1-c]
Length = 292
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V+DKPAG TD CA++ LG + + H++D T G
Sbjct: 93 IIYENDDVLVIDKPAGQKTHPNLYETDTALNDCASY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT----------TAPLPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A T LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIEATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK+ G + K++L TGRTHQ+R
Sbjct: 202 RMVRADGLKAITHYQVVKKI-------GSKILV--------------KLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|418721145|ref|ZP_13280333.1| RNA pseudouridine synthase [Leptospira borgpetersenii str. UI
09149]
gi|418735085|ref|ZP_13291497.1| RNA pseudouridine synthase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421092763|ref|ZP_15553492.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200801926]
gi|410364352|gb|EKP15376.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200801926]
gi|410742624|gb|EKQ91372.1| RNA pseudouridine synthase [Leptospira borgpetersenii str. UI
09149]
gi|410749341|gb|EKR02233.1| RNA pseudouridine synthase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456890514|gb|EMG01328.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200701203]
Length = 271
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
++ N RI TES + +KP G V T D+ E+ A L L LRT +++D T
Sbjct: 4 VNLNIRIFYETESFLFAEKPPGIPVHATKDSKRENFADRLQEELSLEY-LRTVNRLDLDT 62
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVSE 331
G V L + + R + K K+YL + + T Y++ N R V
Sbjct: 63 SGLVFLCKNPDKNKEADRIL--KSSSKIYLCVADGIVEEEHFTETCYIKDGNKKVRKVFS 120
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G E + K+ + YS+ KL TGR HQ+R L+
Sbjct: 121 GGDKAVTEFLTLKR------NLKDHYSV-------------LLAKLHTGRRHQIRLHLSE 161
Query: 392 CGAPIVGDSMY 402
G PIVGD +Y
Sbjct: 162 KGHPIVGDYVY 172
>gi|421100162|ref|ZP_15560798.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200901122]
gi|410796752|gb|EKR98875.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200901122]
Length = 274
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N RI ES + +KP+G V T D+ E+ A + L L LRT +++D T G
Sbjct: 6 LNIRIFYENESFLFAEKPSGIPVHATKDSKRENFADRLQKQLSLEY-LRTVNRLDLDTSG 64
Query: 276 CVVL----ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLV 329
V + QE I K +K+YL + + I T Y++ N R V
Sbjct: 65 LVFFCKDPGKNQEADRIL------KTSEKIYLCVVDGIVEEEHFIETCYIKDGNKKVRKV 118
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
G E + K+ +DY KL TGR HQ+R L
Sbjct: 119 FSGGNKAVTEFLILKR-------------------NLKDYYSVLLAKLHTGRRHQIRFHL 159
Query: 390 AACGAPIVGDSMY 402
+ G PIVGD +Y
Sbjct: 160 SEKGHPIVGDHVY 172
>gi|57239048|ref|YP_180184.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|58578991|ref|YP_197203.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|57161127|emb|CAH58040.1| putative ribosomal large subunit pseudouridine synthase C
[Ehrlichia ruminantium str. Welgevonden]
gi|58417617|emb|CAI26821.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
Length = 305
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ ++ +V++KP+G SV GG+ I S + R + ++ H++D T G ++
Sbjct: 92 IVYEDDNVLVINKPSGVSVQGGSKVKISISDVLDSIR---IGESMKIVHRLDKSTSGILM 148
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI---NIAPRLVSEGWYL 335
LAR + + +++KVKK YLALT +P PI L ++
Sbjct: 149 LARNARVSRLIMNEFKDRKVKKKYLALTCG-IPDDDFGQIDYPIVKKKHGITLEKNMSFM 207
Query: 336 CQLEVM--ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
Q M +K+P D G ++ +TGR HQ+R L+ G
Sbjct: 208 QQAVTMFSTLRKLP------------NDIGL--------LDLQPITGRKHQIRIHLSRIG 247
Query: 394 APIVGDSMY 402
PIVGD Y
Sbjct: 248 CPIVGDVKY 256
>gi|406026546|ref|YP_006725378.1| 23S rRNA pseudouridylate synthase [Lactobacillus buchneri CD034]
gi|405125035|gb|AFR99795.1| 23S rRNA pseudouridylate synthase [Lactobacillus buchneri CD034]
Length = 296
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 228 VVLDKPAGTS---VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KP G + D++ + R + ++D T G V+ A+
Sbjct: 89 LVVNKPYGVASVPAHNHVDSLVNRVKGYYQRQGYANQKIHIVTRLDKDTSGLVIFAKHHF 148
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
S+ ++++++ ++K YLA+ + Y+ PI A + +V++
Sbjct: 149 AHSVLDKQLKDRTIQKTYLAIVADRISTPHFEIYL-PIGRADD------SFVKRQVVDSG 201
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYE--CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K+ +A W R A + K++L TGRTHQ+R +AA G P++GD +Y
Sbjct: 202 KMSVTEA------------WTVRRLAKQTLLKVRLHTGRTHQIRVHMAAIGHPLIGDWLY 249
>gi|373450219|ref|ZP_09542244.1| Pseudouridine synthase [Wolbachia pipientis wAlbB]
gi|371932579|emb|CCE77241.1| Pseudouridine synthase [Wolbachia pipientis wAlbB]
Length = 317
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSR--IIAVTESHVVLDKPAGTSV----G 239
I + D IV+ G VH+ + ++N + II E +VL K +G +V G
Sbjct: 49 IINNDHIVKLGEEYIVHLVQPDISISIEPNYNIKLDIIYEDEDIIVLSKQSGLTVHPGAG 108
Query: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
D + + + + T H++D T G +V+A+ ++ S + +K+K
Sbjct: 109 TNNDTLLNAVIAHLGKIPYINTRSGIVHRLDKDTSGLMVIAKNEQSHSFLSELLSNRKIK 168
Query: 300 KLYLALTTAPLPV---GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA 356
+ YLA+ LP + TH IAP+ ++ E+M K A
Sbjct: 169 REYLAVIWGALPNLQGTVKTH------IAPKRSNK-------EMMCVTKTAGKLAIT--H 213
Query: 357 YSIEDC-GWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
YS++ G S K L TGRTHQ+R ++ G +VGD +Y
Sbjct: 214 YSVKKIIGQASL-----VKCTLETGRTHQIRVHMSHIGHSVVGDQVY 255
>gi|254448155|ref|ZP_05061618.1| ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HTCC5015]
gi|198262281|gb|EDY86563.1| ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HTCC5015]
Length = 321
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
RI+ E +V++KP+G + G+ + A G T L H++D T GC
Sbjct: 95 QRILFEDERLLVINKPSGMAAHAGSGVPFGIAEAVHQHHCDGKRTEL--VHRLDRETSGC 152
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP----VGIMTHYMRPINIAPRLVSEG 332
++LA+ + ++ R+++ K YLAL L V + + A +V E
Sbjct: 153 LLLAKGRSVLNVLQDSFRQRETHKQYLALLVGDLKGSRRVDLALQKTKLSGEAMVVVDEA 212
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ PW D T+ A ++ + TGRTHQ+R A
Sbjct: 213 GKSALSDFEPLAHYPWNDRTLTLA-----------------RVTIHTGRTHQIRVHARAL 255
Query: 393 GAPIVGDSMY 402
G P++GD Y
Sbjct: 256 GLPLLGDDKY 265
>gi|381394076|ref|ZP_09919794.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330348|dbj|GAB54927.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 315
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II + +V++KP+G +V G + A RAL +P L H++D T GC+V
Sbjct: 93 IIYEDDRLLVINKPSGMAVHGGSG--LSYGLIEALRALRPNSPYLELVHRLDRDTSGCIV 150
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LA+ + H ++R+KK+ K Y AL P VS G Q+
Sbjct: 151 LAKKRSALRHLHEQLRDKKMDKTYHALVAGHWPEKRSK------------VSAGLQKNQI 198
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+ E ++ + D GK +A + K +TGRTHQ+R G I
Sbjct: 199 QSGE--RMVFADEN-GKHSETRFSVIGYYPHASLLEAKPITGRTHQIRVHCQFAGHAIAN 255
Query: 399 DSMYMPAAIAQ 409
DS Y A +
Sbjct: 256 DSKYGDEAFTK 266
>gi|50545681|ref|XP_500379.1| YALI0B01276p [Yarrowia lipolytica]
gi|49646245|emb|CAG82596.1| YALI0B01276p [Yarrowia lipolytica CLIB122]
Length = 337
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 75/187 (40%), Gaps = 23/187 (12%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RI+ ++ VV+DKP G V T + S GL L H++D T G +V
Sbjct: 110 RIVFENDALVVVDKPGGIPVHPTGKYLFNSVKEILKHETGLEE-LYPAHRLDKNTTGVLV 168
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG-IMTHYMRPINIAPRLVSEGWYLCQ 337
A+T E + ++I + KK YLA P G + TH+ N R V
Sbjct: 169 FAKTSESVNHVTQQIMSRSAKKEYLARVKGRFPPGRVETHHPVVENTIKRNVQPKDAHTA 228
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
E +V + + + SI C PS TGR HQ+R L G PI
Sbjct: 229 FE-----RVAYDEH---RDLSIVRC-LPS------------TGRNHQIRQHLLHLGYPIE 267
Query: 398 GDSMYMP 404
D Y P
Sbjct: 268 NDREYNP 274
>gi|407773645|ref|ZP_11120945.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407283091|gb|EKF08632.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 267
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 15/177 (8%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KP G + G A G+ H++D T GC++L R +
Sbjct: 26 IVLNKPPGLASHGGPKTYFHVDAYLPDLKFGIQPEPTLAHRLDRDTAGCLLLCRHPKSSK 85
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
R EKK+ K Y A+ + G + + IN GW + E + K
Sbjct: 86 KITRLFTEKKIGKSYWAVVRGAMEDDHGFIDAPIGKIND-----ESGWTMLVHEDGQPSK 140
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ GK +D W ++ TGRTHQ+R L G P++GD Y
Sbjct: 141 TEYTVLGRGKDADGKDITW--------LELVPHTGRTHQLRVHLDHVGHPVIGDPFY 189
>gi|365174879|ref|ZP_09362317.1| RluA family pseudouridine synthase [Synergistes sp. 3_1_syn1]
gi|363613744|gb|EHL65249.1| RluA family pseudouridine synthase [Synergistes sp. 3_1_syn1]
Length = 331
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 228 VVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLR---TTHQIDNCTEGCVVLAR 281
+V+DKPAG V G F LG +R H++D T G +V+AR
Sbjct: 116 IVVDKPAGLVVHPAPGHWSGTLVHGLLFRYPDLGTLNGVRRPGIVHRLDATTSGLMVVAR 175
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM 341
R + ++++K YLAL P + PI+ P + ++ +
Sbjct: 176 NGLAQEGLFRDFKARRIRKEYLALCYGQTP-ALRGSVKYPIDRDP------YNRLRMACV 228
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
E + W D + W DY+ K L +GRTHQ+R + A P+VGD +
Sbjct: 229 EDGREAWTDY---------ERLWSVNDYSL-VKCTLHSGRTHQIRVHMQAVRCPLVGDRL 278
Query: 402 YMPA 405
Y P+
Sbjct: 279 YAPS 282
>gi|241764488|ref|ZP_04762509.1| pseudouridine synthase, RluA family [Acidovorax delafieldii 2AN]
gi|241366072|gb|EER60669.1| pseudouridine synthase, RluA family [Acidovorax delafieldii 2AN]
Length = 353
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 42/268 (15%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSV-------GGTTDN 244
V+AG L V + P + + + + ++H+ V++KPAG V GGT N
Sbjct: 99 VKAGDTLTVEMRPTLQSQAFRPEALPIDVVYEDAHLLVVNKPAGLVVHPAPGNWGGTLLN 158
Query: 245 ---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
++ A RA H++D T G +V+AR + R I + V +
Sbjct: 159 GLLARDAKAQLVPRA-------GIVHRLDKDTSGLMVVARDRTTMDALVRMIAARTVHRQ 211
Query: 302 YLALTTAPLPVGIMTHYMR-PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIE 360
YLA+ P G+ ++ PI PR ++ V+ D GK +
Sbjct: 212 YLAIAHRPW-TGVPNRAVQAPIGRDPR------NRLRMAVVNL------DTHAGKPARTD 258
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL----- 415
D + L TGRTHQ+R +A+ G P+V D++Y A A L L
Sbjct: 259 IRWLAGNDLGCWVECTLHTGRTHQIRVHMASLGHPLVADALYGGAPAAGLQRQALHAYRL 318
Query: 416 ---NPFGKCQKEYAS--DDDKEMAVIEW 438
+P E+ + DD A+ EW
Sbjct: 319 SFTHPVSGQALEFRAPLPDDMRRALAEW 346
>gi|404378747|ref|ZP_10983831.1| RluA family pseudouridine synthase [Simonsiella muelleri ATCC
29453]
gi|294483870|gb|EFG31554.1| RluA family pseudouridine synthase [Simonsiella muelleri ATCC
29453]
Length = 306
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-------FASRALGLTTPLRTT 266
I ++ RI++V +V+DKP V + + E+ T + TP+
Sbjct: 90 ISFDERILSVDNDLIVVDKPHFLPVIPSGRFLRETLLTRLRLRSDLQHLNVADITPI--- 146
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G ++L+ + +I+ + +EK ++K+Y AL L + P+ +
Sbjct: 147 HRLDKDTAGVILLSHNPKTRAIYQQLFQEKNIRKIYHALAPTRLDLAY------PLLVRS 200
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
RLV + K V + + +E+ G S YE +K +TG+ HQ+R
Sbjct: 201 RLVRGDEFFL------TKTVDGEPNSETEIRLLENRGKIS---LYE--LKPITGKKHQLR 249
Query: 387 AQLAACGAPIVGDSMY 402
+ + G P++ D +Y
Sbjct: 250 VHMMSLGMPLLNDMLY 265
>gi|195434114|ref|XP_002065048.1| GK15253 [Drosophila willistoni]
gi|194161133|gb|EDW76034.1| GK15253 [Drosophila willistoni]
Length = 761
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 83/214 (38%), Gaps = 28/214 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 397 IVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLLF 455
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
R+ + ++IR ++V+K Y+ P GI+ PI + +
Sbjct: 456 GRSPKKARQMEQQIRNRQVEKEYICRVEGIFPDGIV-ECKEPIEV-----------VSYK 503
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI-----KLLTGRTHQVRAQLAACGA 394
+ CK P GK DC + + K K LTGR HQ+R L G
Sbjct: 504 IGVCKVSPR-----GK-----DCTTTFQKLSQNGKTSVVLCKPLTGRMHQIRVHLQYLGY 553
Query: 395 PIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
PI+ D +Y L + GK E D
Sbjct: 554 PILNDPLYNHEVFGPLKGRSGDIGGKTDDELIRD 587
>gi|406960537|gb|EKD87564.1| Pseudouridine synthase [uncultured bacterium]
Length = 219
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT---HQIDNCTEGC 276
I+ E +V++KP G V EE+ +A + L T+ + + H+ID T GC
Sbjct: 5 ILFEDEDLLVINKPPGIVVNRAQSVKEETIEDWAGKKL--TSQVERSGIVHRIDKETSGC 62
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPR 327
+++A+T R+ +E+++ K YLA+ L PVG + I P
Sbjct: 63 LLIAKTPHVFFELQRQFKEREIHKTYLAIVHGSLVPEEGEIRAPVGRLPWNRERFGIVP- 121
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
E M KV D YS + +P TGRTHQ+R
Sbjct: 122 --------GGREAMTKYKVRKSDDN----YSFVEL-YPQ------------TGRTHQIRV 156
Query: 388 QLAACGAPIVGDSMY 402
L PIVGD +Y
Sbjct: 157 HLKYINHPIVGDYLY 171
>gi|92116023|ref|YP_575752.1| pseudouridine synthase [Nitrobacter hamburgensis X14]
gi|91798917|gb|ABE61292.1| pseudouridine synthase [Nitrobacter hamburgensis X14]
Length = 292
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 40/222 (18%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVIDKPAGIPVHRGPKGGANLEASFEALRFGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTH----YMRPI- 322
+VL R ++ + + K+ K Y A+ T +P+G + H + +P
Sbjct: 72 LVLGRHRKATASLGLLFKHGKISKTYWAVVEGGPTEDEGTIDIPLGRLNHERGWWQKPDP 131
Query: 323 NIAP-----RLVSEGWYL----------CQLEVMECKKVPWPDATVGKAYSIEDCGWPSR 367
N P +++ G + C +E E + P G + I P R
Sbjct: 132 NGLPSVTRWKVLGRGIFTAASDRFSPSPCGVETSEAR--PEGAGARGNSDGIAPDHPPPR 189
Query: 368 DYAYECKIKL-------LTGRTHQVRAQLAACGAPIVGDSMY 402
A E I+L +TGRTHQ+R AA PI GD++Y
Sbjct: 190 --AREEGIQLTWLALEPVTGRTHQLRVHCAAMRWPIAGDNIY 229
>gi|66813276|ref|XP_640817.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
gi|60468845|gb|EAL66845.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
Length = 578
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 92/231 (39%), Gaps = 35/231 (15%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL--------GLTTPLRTTHQID 270
+I+++ E+ VV+DKP+ V C F +L G+ L H++D
Sbjct: 241 KIVSLDENVVVVDKPSSIPV--------HPCGRFRHNSLMYILASEHGINQ-LYGVHRLD 291
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH-----YMRPINIA 325
T G ++LART + + +I+ V K YLA P + + I +
Sbjct: 292 RLTSGLLLLARTPDSANKKANQIQSGLVSKQYLAKVIGKFPGSDTINSSSSSFNEQIKLC 351
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL---LTGRT 382
L + + Q V++ ++ VG SI S D + I L TGRT
Sbjct: 352 KHLEDGTFIIDQPIVIQSMRLGINHVGVGGKPSITHIKLFSYDQSTNTSIVLCTPKTGRT 411
Query: 383 HQVRAQLAACGAPIVGDSMY---MPAAIAQLSSPGLNPFGKCQKEYASDDD 430
HQ+R L G PI D +Y + L+S G + Y DDD
Sbjct: 412 HQIRVHLKWLGFPIANDPLYNNEFKESFKALTSDG-------KTSYIFDDD 455
>gi|359299253|ref|ZP_09185092.1| 23S rRNA pseudouridylate synthase C [Haemophilus [parainfluenzae]
CCUG 13788]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 28/209 (13%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALG-LTTPLRTTHQIDNC 272
+ +I+ E +V++KP+G +V GG+ N A RAL L H+ID
Sbjct: 93 ELEQQILYEDEVLLVINKPSGIAVHGGSGLNF---GVIEALRALRPQARFLELVHRIDRD 149
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G +++ I AP L +E
Sbjct: 150 TSGILLVAKKRSSLRHLHEQLREKTVQKDYLALVR-----GQWQSHVKAIK-APLLKNE- 202
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC---KIKLLTGRTHQVRAQ 388
L E +++ + P T + IE+ Y E K +TGRTHQ+R
Sbjct: 203 --LASGERIVKVSEAGKPSET---RFQIEE------RYGQEATLVKASPITGRTHQIRVH 251
Query: 389 LAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A A++ GLN
Sbjct: 252 TQYAGHPIACDDKYGEAEFDAKMQMLGLN 280
>gi|332525768|ref|ZP_08401915.1| RluA family pseudouridine synthase [Rubrivivax benzoatilyticus JA2]
gi|332109325|gb|EGJ10248.1| RluA family pseudouridine synthase [Rubrivivax benzoatilyticus JA2]
Length = 305
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E + + KPAG +V G + + RA L H++D T G ++LA+ +
Sbjct: 87 EHLLAIAKPAGVAVHGGS-GVSSGVIEQLRRARPDARFLELVHRLDKETSGVLLLAKKRS 145
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ + R + K YLAL VG+ ++ +++A + +G +
Sbjct: 146 ALTALQDQFRARDTGKNYLALV-----VGVWPKKLKVLDLA---LHKGTDAAGERHVRVV 197
Query: 345 KVPWPDA--TVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
PDA ++ S+ G Y+ +I L TGRTHQ+R LA G PIVGD Y
Sbjct: 198 AADAPDARRSITVVRSVRAVG----PYSL-LEIGLKTGRTHQIRVHLAHSGHPIVGDPKY 252
>gi|153810096|ref|ZP_01962764.1| hypothetical protein RUMOBE_00477 [Ruminococcus obeum ATCC 29174]
gi|149834274|gb|EDM89354.1| RNA pseudouridine synthase [Ruminococcus obeum ATCC 29174]
Length = 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 216 WNSR------IIAVTESHVVLDKPAGTSVG----GTTDNIEESCATFASRALGLTTP-LR 264
WN++ II + +V K AG +V G D +E S + + T P L
Sbjct: 2 WNNKNSIEDMIIFEDKDILVCHKAAGIAVQNARIGAAD-MESSLKNYLALKNTETVPYLG 60
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT--TAPLPVGIMTHYMRPI 322
H++D EG +V A+ ++ + R+I + K YLA+T + G + Y
Sbjct: 61 VVHRLDQPVEGVLVFAKNKKAAAGLTRQITTGNIVKEYLAVTDRMSEKHQGRLEDY---- 116
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA--YSIEDCGWPSRDYAYECKIKLLTG 380
L+ G EV+ K A + + I D S KI L TG
Sbjct: 117 -----LIKNGRTNTS-EVVTSKTSGAKKAVLDYEVIHQISDERTESGKRIL-IKIHLETG 169
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKC 421
R HQ+R Q+A G P++GD Y P I+QL P G C
Sbjct: 170 RHHQIRVQMAHAGMPLLGDRKYNPGEISQL------PLGLC 204
>gi|256829455|ref|YP_003158183.1| pseudouridine synthase [Desulfomicrobium baculatum DSM 4028]
gi|256578631|gb|ACU89767.1| pseudouridine synthase [Desulfomicrobium baculatum DSM 4028]
Length = 234
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 40/206 (19%)
Query: 209 PRCYDIDWNSRIIAVTESH--VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRT 265
P YD R+ + E VV++KP+G SV G T + +S SR + +
Sbjct: 5 PLRYDPPTEPRLAVIHEDRDMVVVNKPSGLLSVPGRTPELFDSVL---SRVREIHRGAQA 61
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +V+A ++ +I ++ +++ +KLYLA G+M+ +++
Sbjct: 62 VHRLDLGTSGVLVVATRRKAETILRQQFQDRLTRKLYLARVQ-----GVMSEDSGQVDLP 116
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS-RDYAY-----ECKIKLL- 378
+C WP+ + D G P+ DY E + LL
Sbjct: 117 --------LICD----------WPNRPM--QMVCHDTGKPALTDYQVLESDGESTLVLLR 156
Query: 379 --TGRTHQVRAQLAACGAPIVGDSMY 402
TGR+HQ+R +A+ G PI+GD++Y
Sbjct: 157 PHTGRSHQLRVHMASLGHPILGDNLY 182
>gi|344943140|ref|ZP_08782427.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
gi|344260427|gb|EGW20699.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
Length = 319
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 46/209 (22%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LR 264
P+ I+ E ++++KPAG +V G + ++ L L P L
Sbjct: 87 PQGLQAALQQGILFEDEGFLIVNKPAGFAVHGGS-----GVSSGIIEGLRLIRPEAHFLE 141
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T GC+++A+ + + H R+ + K YLAL TAPL
Sbjct: 142 LVHRLDKDTSGCLIIAKKRSALKLLHELFRDNHIHKTYLALLAGQWARKKLVVTAPLLKN 201
Query: 314 IMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
+ R+V + E + + + D+T+ +A P
Sbjct: 202 VAKG-------GERMVVISQSGKEAETLFRRVKLFSDSTLVEA-------SPK------- 240
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R A+ G PIVGD Y
Sbjct: 241 -----TGRTHQIRVHAASLGHPIVGDERY 264
>gi|417838044|ref|ZP_12484282.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
gi|338761587|gb|EGP12856.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
Length = 260
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 49/190 (25%)
Query: 228 VVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPAG D CAT+ LG + P H++D T G +++A+
Sbjct: 70 LVINKPAGQKTHPNLNEEDTALNDCATY----LGYS-PF-IVHRLDMLTSGLLLVAKNPA 123
Query: 285 YCSIFHRKIREKKVKKLYLA-LTTAP---------LPVGIMTHYMRPINIAPRLVSEGWY 334
I +R++ +K + + YLA + +P LP+G H R R+V +
Sbjct: 124 VVPILNRQLTDKTLHREYLAWIYNSPQIKNTGIIDLPIGHDPHDQRK-----RMVRQDGQ 178
Query: 335 --LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ EV++ K D + K+ L TGRTHQ+R LAA
Sbjct: 179 KAVTHYEVIKRDK----DRIL-------------------VKLTLETGRTHQIRVHLAAL 215
Query: 393 GAPIVGDSMY 402
GAPI+GD +Y
Sbjct: 216 GAPIIGDPLY 225
>gi|440751287|ref|ZP_20930521.1| tRNA pseudouridine synthase [Mariniradius saccharolyticus AK6]
gi|436480151|gb|ELP36408.1| tRNA pseudouridine synthase [Mariniradius saccharolyticus AK6]
Length = 237
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 16/185 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCV 277
II E+++ ++KP G V T EE A A R L + H+ID T G V
Sbjct: 7 IIFENENYLAINKPVGMLVHRTNIAFEEH-ALIAERILKQQLGFKVFPLHRIDRPTSGIV 65
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
+ ++ + S + +KVKKLYL + +P H + ++ +L EG
Sbjct: 66 LFGKSSDAASALQPQFTTEKVKKLYLCIVRGHMPTA---HGILDFPLSKKL--EG----- 115
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
E+ E + W + +S D SR Y+ K+ TGR HQ+R +A ++
Sbjct: 116 -ELREARTEFWTLSETEIPFSSSDRYLTSR-YSL-LKVYPHTGRMHQIRRHMAKARHYVI 172
Query: 398 GDSMY 402
GD+ +
Sbjct: 173 GDTTH 177
>gi|254361221|ref|ZP_04977365.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|452745187|ref|ZP_21945024.1| 23S rRNA pseudouridylate synthase C [Mannheimia haemolytica
serotype 6 str. H23]
gi|153092712|gb|EDN73761.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|452086797|gb|EME03183.1| 23S rRNA pseudouridylate synthase C [Mannheimia haemolytica
serotype 6 str. H23]
Length = 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ S+I+ ES +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELESQILYEDESMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 200
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 201 NE---LASGERIVRVSEEGKPSET---RFSIEER------YANATLVKASPITGRTHQIR 248
Query: 387 AQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A +++ GL
Sbjct: 249 VHTQYAGHPIALDDKYGDAEFDSKMKEVGLQ 279
>gi|448081767|ref|XP_004194969.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
gi|359376391|emb|CCE86973.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
Length = 602
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 16/184 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ E+ + +DKP+G V T + LG + +++D T G +
Sbjct: 189 KIVFEDENIIAIDKPSGIPVHPTGRFRYNTITNIFKHELGQV--VHPCNRLDRLTSGLMF 246
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
L +T + F ++IR++ V K Y+A P+G +T I I+P+ L
Sbjct: 247 LGKTPKGADSFAQQIRDRTVSKEYVARVKGKFPLGEITVDEPLITISPKHT--------L 298
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
V++ +K T + + + P D + K + LTGRTHQ+R L G PI
Sbjct: 299 NVID-RKSGKEAKTAFRRITYD----PETDTSV-VKCRPLTGRTHQIRVHLQFLGHPIAN 352
Query: 399 DSMY 402
D +Y
Sbjct: 353 DPLY 356
>gi|409198959|ref|ZP_11227622.1| ribosomal large subunit pseudouridine synthase D [Marinilabilia
salmonicolor JCM 21150]
Length = 229
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H++D G V+ ART + S ++ +EK+VKK Y A+
Sbjct: 53 LGVVHRLDRPVSGVVLFARTSKALSRMNKMFQEKEVKKTYWAVVK--------------- 97
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLTGR 381
N+ P+ E + + + K +P +G I S Y ++ L TGR
Sbjct: 98 NLPPQDEGELRHFMLKDSNKNKSYAFPKKRLGAKEGILKYRLISSTSNYHLLEVDLQTGR 157
Query: 382 THQVRAQLAACGAPIVGDSMY 402
HQ+R+QLA G PI GD Y
Sbjct: 158 HHQIRSQLAKIGCPIKGDLKY 178
>gi|380301759|ref|ZP_09851452.1| 23S RNA-specific pseudouridylate synthase [Brachybacterium
squillarum M-6-3]
Length = 336
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 20/230 (8%)
Query: 191 QIVEAGTYLRVHVHPKRFPRCYDI-DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
Q V AG L H R P D+ D + ++ E +V+DKP G + ++ S
Sbjct: 84 QTVRAGDELWFH----REPAPEDVPDISLSVLLHDEHLLVIDKPPGVATMPRGAHVFGSA 139
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
RA G+T L H++D T G + + + + + +V K Y A P
Sbjct: 140 LVRLRRATGITA-LSPVHRLDLPTRGVLAFSVMPTERAAYQQLFARGEVAKEYRA-RVVP 197
Query: 310 LPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS--R 367
P + P V E L + + + V D G ++ + +
Sbjct: 198 APGADL----------PAAVGERTVLAD-RLEKTRGVHRTDVVAGAPNAVTEVELLAIGS 246
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNP 417
D ++ TGRTHQ+RAQLAA GAPI+GD +Y +PG P
Sbjct: 247 DGTRLLSLRPRTGRTHQLRAQLAARGAPILGDELYRDEPGGTSRAPGQVP 296
>gi|116492962|ref|YP_804697.1| pseudouridylate synthase, 23S RNA-specific [Pediococcus pentosaceus
ATCC 25745]
gi|421894326|ref|ZP_16324816.1| pseudouridine synthase, RluA family protein [Pediococcus
pentosaceus IE-3]
gi|116103112|gb|ABJ68255.1| Pseudouridylate synthase, 23S RNA-specific [Pediococcus pentosaceus
ATCC 25745]
gi|385272870|emb|CCG90188.1| pseudouridine synthase, RluA family protein [Pediococcus
pentosaceus IE-3]
Length = 253
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Query: 251 TFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ SR + + T ++D T G V+ A+ + ++ + +R++K+ K+YL +
Sbjct: 71 NYESRVVHVVT------RLDQDTSGLVIFAKHRFAHTVMDQDLRQRKINKMYLTIV---- 120
Query: 311 PVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS-RDY 369
EG + Q ++E PD+ + + + G PS +Y
Sbjct: 121 --------------------EGTFTNQHGIIETPIQRDPDSFIKRMVAPMGEGKPSLTEY 160
Query: 370 AYE--------CKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
E K+KL +GRTHQ+R ++ G P+VGD +Y A L L+ F
Sbjct: 161 WVEDTFKNFTLLKVKLHSGRTHQIRVHFSSIGHPLVGDELYGGMANDILQRQALHCF 217
>gi|404483334|ref|ZP_11018557.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
gi|404343607|gb|EJZ69968.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
Length = 216
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N +I+ + +V KP G S ++++ EE + + +G + H++D G
Sbjct: 1 MNLKILYEDKDVIVTVKPRGIS-SQSSNSFEEDMVSLLKKHMGKDAYVGVIHRLDKPVYG 59
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPI-NIAPRLVSEG 332
+V + ++ I ++R+K ++K Y AL G + +++ + N ++V +
Sbjct: 60 IMVYGKNKKATEILCNELRKKNIEKTYEALVDGFPESDEGELIDFIKKLDNNVSKVVEKS 119
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ V++ K V ++Y +D Y +I L+TGR HQ+R Q A+
Sbjct: 120 TAGAKEAVLKYK--------VLESYKKDDR------YITRLRINLITGRHHQIRLQCASH 165
Query: 393 GAPIVGDSMY 402
G P+ GD Y
Sbjct: 166 GFPLYGDHKY 175
>gi|254796911|ref|YP_003081748.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
gi|254590147|gb|ACT69509.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
Length = 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 40/228 (17%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVT--------ESHVVLDKPAGTSVG-- 239
D + + +L++ P+ P +S+ + E+ + +DKP G V
Sbjct: 55 DSLTLSANFLQILSSPREIPSDSSKVVDSKFVKFIASLMLYEDENVLAIDKPFGFPVQSG 114
Query: 240 -GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
G T +I+ + + + R H++D T G ++ A+T + R + V
Sbjct: 115 YGITTSIDNAMKS-------INPEYRVVHRLDKHTTGVLIFAKTLDAARELWRLFSNRLV 167
Query: 299 KKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA 356
KK YLA+ L G + Y+ +++ +G EVM+C + + + +
Sbjct: 168 KKRYLAIVIGELKEKKGAVDCYIN------KVLFKGE-----EVMQCNHIGNGEHAITQF 216
Query: 357 YSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLAACGAPIVGDSMY 402
+ I + + I+L LTGR HQ+R+Q+A+ G P++ D Y
Sbjct: 217 HVI-------KKFKNASLIELFPLTGRKHQIRSQMASIGHPVLNDGKY 257
>gi|237747521|ref|ZP_04578001.1| RNA pseudouridylate synthase [Oxalobacter formigenes OXCC13]
gi|229378883|gb|EEO28974.1| RNA pseudouridylate synthase [Oxalobacter formigenes OXCC13]
Length = 319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
VV DKP V + + E+ + LG+ T L H+ID T G V+ + E +
Sbjct: 105 VVADKPHFLPVTPSGKYVSETLLVRLRKKLGIDT-LTPIHRIDRETAGLVLFSVKPEGRN 163
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
++ R RE V K Y A+ AP I P+ R + EG ++ V+
Sbjct: 164 LYQRLFRENFVSKHYEAI--APYRDDIAF----PMRYRSR-IEEGDSFMRMRVI------ 210
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY---MP 404
PD T I S +A+ +K +TGR HQ+R Q+ + G P++ D +Y +P
Sbjct: 211 -PDGTPNAETEI-SIQQKSNAFAH-YHLKPVTGRKHQLRIQMCSLGIPLLNDRIYPVHLP 267
Query: 405 AAIA 408
A+
Sbjct: 268 EAVT 271
>gi|409397182|ref|ZP_11248120.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas sp. Chol1]
gi|409118342|gb|EKM94742.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas sp. Chol1]
Length = 294
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 24/222 (10%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
+DQ+ AG LR+H + P + + RI+ V E VV DKP SV + + E+
Sbjct: 56 LDQLYRAG--LRIHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNET 112
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+ LG L H+ID T G V+ + ++ + RE+++ K Y A+ A
Sbjct: 113 LLARLCKRLG-NADLVPIHRIDRLTAGLVLFSANRDSRGAYQALFREREIAKRYEAICPA 171
Query: 309 PLPVGIMTHYMRPINIAPRLV-SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR 367
+ H P+ R+V E ++L C+ P++ IE R
Sbjct: 172 ------LPHVEFPLRRRLRMVPGEPFFLM------CEGEGEPNSET----LIEVL--ERR 213
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQ 409
+ + ++GR HQ+R +A GA I D Y PA + +
Sbjct: 214 GDLWRYGLTPISGRKHQLRLHMATLGAGICNDPFY-PALLER 254
>gi|54022650|ref|YP_116892.1| RNA pseudouridylate synthase [Nocardia farcinica IFM 10152]
gi|54014158|dbj|BAD55528.1| putative RNA pseudouridylate synthase [Nocardia farcinica IFM
10152]
Length = 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 36/213 (16%)
Query: 213 DIDWNSR----IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
D DW+ ++A ++ + L+KPAG SV G E A G L H+
Sbjct: 2 DTDWSRLRERCLLAEDDAVLALNKPAGISVTG-----ERHDTDIVELAAGAGERLFPVHR 56
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-----------PLPVGIMTH 317
ID T G V+LA+ R+ ++ +K YLA+ PL VG
Sbjct: 57 IDKVTSGLVLLAKDLAAHGTLTRQFTKRTAEKAYLAVVAGGGLPDRGVIELPLSVG---R 113
Query: 318 YMRPINIAPR---LVSEG-WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
R APR +G W++ +++ K P V A + +
Sbjct: 114 KNRVRIAAPRESIRAEDGRWFVDDADLLAVKNYPSRTEFVTLARTADRT---------VL 164
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
++ +TGR HQ+R LA G IVGD ++ +A
Sbjct: 165 ALRPVTGRRHQIRVHLAWIGHAIVGDPLFDKSA 197
>gi|336399335|ref|ZP_08580135.1| ribosomal large subunit pseudouridine synthase D [Prevotella
multisaccharivorax DSM 17128]
gi|336069071|gb|EGN57705.1| ribosomal large subunit pseudouridine synthase D [Prevotella
multisaccharivorax DSM 17128]
Length = 223
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G VV ART + S + R+ +V K Y A+T P P +TH++
Sbjct: 51 LGVAHRLDRPVAGLVVFARTSKALSRLNDMFRKGEVHKTYWAITHDLPPEPESTLTHWL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK + + D + +I+L+TG
Sbjct: 110 ----TRNEKQNKSYASDHEVQGSKKAVLHYRVIAHS-----------DNYHLLEIRLMTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLAA G PI GD Y
Sbjct: 155 RHHQIRCQLAAMGCPIKGDLKY 176
>gi|194862296|ref|XP_001969969.1| GG23644 [Drosophila erecta]
gi|190661836|gb|EDV59028.1| GG23644 [Drosophila erecta]
Length = 537
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 100/256 (39%), Gaps = 43/256 (16%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 176 LEAG---KLTVNYEKVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPA 232
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT E +IR
Sbjct: 233 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTAERARELELQIR 291
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL--EVMECKKVPWPDAT 352
++V+K Y+ P GI+ N +VS +C++ + +CK
Sbjct: 292 TRQVQKEYVCRVEGRFPDGIVE-----CNEKIDVVSYKIGVCKVSPKGKDCKT------- 339
Query: 353 VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
+ + G D C K LTGR HQ+R L G PI D +Y L
Sbjct: 340 -----TFKRIGEVGSDSIVLC--KPLTGRMHQIRVHLQYLGYPISNDPLYNHEVFGPLKG 392
Query: 413 PGLNPFGKCQKEYASD 428
G + G +++ S+
Sbjct: 393 RGGDIGGITEEQLISN 408
>gi|73666929|ref|YP_302945.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
gi|72394070|gb|AAZ68347.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
Length = 308
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 193 VEAGTYLRVHVHPKRF---PRCYDIDWNSRIIAVTESHV-VLDKPAGTSV-GGTTDNIEE 247
++ T + +H KR Y I+ S I + V +++KPAG SV GGT I
Sbjct: 62 IKCNTIIGEEIHTKRICKTDSSYLINLISNSILYEDDDVLIINKPAGVSVQGGTKVRISI 121
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
S R +R H++D T G ++LAR + + + ++V+K YLALT
Sbjct: 122 SDILDKIRD---GESMRIVHRLDKDTSGILMLARNARASRLIMHEFKNRRVEKKYLALTQ 178
Query: 308 A--PLPVGIMTHYM--RPINIAPRLVSEGWYLCQLEVME---CKKVPWPDATVGKAYSIE 360
VG + H + + N + G + Q + KK+P+
Sbjct: 179 GIPKNDVGEINHSITKKKHNFYEN-IGTGNSIFQEAITSFFVLKKLPY------------ 225
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
D G ++K TGR HQ+R L+ G I+GD Y
Sbjct: 226 DIGL--------LELKPKTGRKHQIRIHLSHIGCSIIGDKKY 259
>gi|146302439|ref|YP_001197030.1| pseudouridine synthase [Flavobacterium johnsoniae UW101]
gi|146156857|gb|ABQ07711.1| ribosomal large subunit pseudouridine synthase D [Flavobacterium
johnsoniae UW101]
Length = 229
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H++D T G VV ART + S + ++ KK Y A+ +P+
Sbjct: 60 LGVIHRLDRPTTGIVVFARTSKALSRMNELFSNRETKKTYWAVVKN-----------KPV 108
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
A +LV YL + E K + K S++ +I L TGR
Sbjct: 109 EAAAKLVH---YLKRNEKNNTSKAHLKEVPDSKLASLDYKIIKELQNYTALEINLHTGRH 165
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+RAQL+A G+PI GD Y
Sbjct: 166 HQIRAQLSAIGSPIKGDLKY 185
>gi|393762106|ref|ZP_10350734.1| 23S rRNA pseudouridylate synthase [Alishewanella agri BL06]
gi|392606887|gb|EIW89770.1| 23S rRNA pseudouridylate synthase [Alishewanella agri BL06]
Length = 238
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 38/191 (19%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+IA T VL+K AG S + E+ A L H++D T G ++L
Sbjct: 7 VIAETPQFWVLNKAAGLSF-----HSEQGPGLVALAEAQFAEKLYAVHRLDKVTSGLLIL 61
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
AR + + +++ K YLAL+ A +P +GW +
Sbjct: 62 ARQPAGAAALTQLFASRQITKCYLALSAA-----------KPQK------KQGW--VKGA 102
Query: 340 VMECKKVPWPDATVGKAYSI--------EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ ++ W A G A ++ +D P R + ++ TG+THQ+R L +
Sbjct: 103 MQPARRGAWRLAEAGAAPAVTYFVSQGYQDA--PFRAFL----LRPYTGKTHQLRVALKS 156
Query: 392 CGAPIVGDSMY 402
GAPI+GDS+Y
Sbjct: 157 VGAPILGDSLY 167
>gi|334133185|ref|ZP_08506940.1| tRNA pseudouridine synthase C [Methyloversatilis universalis FAM5]
gi|333442095|gb|EGK70067.1| tRNA pseudouridine synthase C [Methyloversatilis universalis FAM5]
Length = 247
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCVVLARTQEY 285
V +DKP+G V T + E+ FA + L R H++D T G +V A E
Sbjct: 12 VAIDKPSGLLVHRTALDRHET--EFAVQRLRDQIGQRVWPVHRLDRGTSGVLVFALNPEA 69
Query: 286 CSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPIN--IAPRLVSEGW--YLCQLEV 340
+ ++ + K YLA+ P G + H +R I+ I PR EG + Q +
Sbjct: 70 AHVLAQQFAAHRPAKRYLAVVRGHPPEAGDIDHPLRRIDDAIDPRAAREGAEPVVAQPAL 129
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
+++ A +I+ +P+ YA + LTGRTHQ+R L PI+GD+
Sbjct: 130 TRYRRL----AVAEMPVAIDR--YPASRYAL-VEAMPLTGRTHQIRRHLKHIAHPIIGDA 182
Query: 401 MY 402
Y
Sbjct: 183 TY 184
>gi|319787308|ref|YP_004146783.1| pseudouridine synthase [Pseudoxanthomonas suwonensis 11-1]
gi|317465820|gb|ADV27552.1| pseudouridine synthase, RluA family [Pseudoxanthomonas suwonensis
11-1]
Length = 319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G + G + + T RAL L H++D T G +V+A+ + +
Sbjct: 104 LVIDKPSGVASHGGSGISFGAIETL--RALRPGQTLELAHRLDRDTSGILVVAKKRSALA 161
Query: 288 IFHRKIREKK----VKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
+RE ++K YL L +P G M+ P+++ R E ++V +
Sbjct: 162 ELQALMREGGSGGGIRKRYLTLLAGRMPDGTMS-VDAPLHVGLRQGGE----RHVQVNQA 216
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K +V ++E G S C++++ TGRTHQ+R G P+ GD Y
Sbjct: 217 GK-----PSVSHFRALERRGGQS-----YCEVRIETGRTHQIRVHAQHIGHPVAGDDKY 265
>gi|406965558|gb|EKD91180.1| Pseudouridine synthase [uncultured bacterium]
Length = 264
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 29/220 (13%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNI---EESCATFASRALGLTTPLR-TTHQIDNC 272
N II + VV+DKP SV T + + EE+ A+ ++ LG+ H++D
Sbjct: 3 NLSIIFEDDFLVVIDKPPNVSV--TDEGVKAGEETIASILAKELGIKAERGGIVHRLDKA 60
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV-GIMTHYMR--PINIAPRLV 329
T G ++ A+T E + + + +KK YLAL + G++ +R P N V
Sbjct: 61 TSGLLLAAKTNEVAQKLKDQFKGRTIKKTYLALVHGIVQDGGVIEGSIRRNPENRFKFTV 120
Query: 330 SEGWY--LCQLEVMECKKVPWPDATVGKAYSI------------EDCGWPSRDY----AY 371
+ + + + ++ ++ + + KA ++ E ++Y
Sbjct: 121 DDSGRDAVTEYKPLQQFQISFFERKFAKANNLKFKIILQELNKREINKLELQNYNQFTLL 180
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLS 411
EC K TGRTHQ+R L G PIVGD Y A+L
Sbjct: 181 ECYPK--TGRTHQIRVHLKYIGFPIVGDEKYAGRKTARLD 218
>gi|423434882|ref|ZP_17411863.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|401125120|gb|EJQ32880.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
Length = 307
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 49/246 (19%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR-------FPRCYDIDWNSRIIAVTE 225
KG TV Q+ + +++++ L+VH+ + + Y + + ++ V +
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEEEYGVDPEYGELYVVYEDDHVLIVNK 99
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 100 PEQMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIA 155
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLC 336
+I R + E+K+K+ Y AL + +G H+ R+ S+G
Sbjct: 156 GAIMDRLLMERKIKRTYAALVEGKVKKKQGKIDAAIGRDRHHA----TRRRISSKG---- 207
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
D + Y +E + ++ + ++L TGRTHQ+R ++ G P+
Sbjct: 208 -------------DQAI-TYYKVEKY-FKKQNTTF-VTLQLETGRTHQIRVHMSHNGNPL 251
Query: 397 VGDSMY 402
VGD +Y
Sbjct: 252 VGDVLY 257
>gi|291562536|emb|CBL41352.1| Pseudouridylate synthases, 23S RNA-specific [butyrate-producing
bacterium SS3/4]
Length = 266
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D G +V A+T+ + +I+ K+KK+Y A+ PV ++ +Y+ + P
Sbjct: 58 HRLDKPVSGVMVYAKTKRAAAALSEQIQSHKMKKIYTAVVHG-RPVNMVDNYVDYMVKTP 116
Query: 327 RLVSEGWY--LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
+G Y + + KK V K E G P ++ + ++ L TGR HQ
Sbjct: 117 ----DGNYSQVVDKGITGAKKAEL-SYEVLKTIDGEAAGMPGKELSL-VRVALKTGRHHQ 170
Query: 385 VRAQLAACGAPIVGDSMY-MPAAIAQLS 411
+R Q+A G P+ GD Y +P A+L
Sbjct: 171 IRVQMAHHGTPLYGDMKYGVPVGTAKLD 198
>gi|406923072|gb|EKD60332.1| hypothetical protein ACD_54C00808G0002 [uncultured bacterium]
Length = 346
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++ E ++L+KP G S GG+ + G + H++D T G ++
Sbjct: 93 VLWKDEHIIILNKPPGLPSQGGSGQGDRHVDGLCEALKFGYKEKPKLVHRLDKDTSGLLM 152
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LART +R + +K+Y A A +P + R +I L+ G
Sbjct: 153 LARTDRVARALSEALRHRLTRKIYWA-AVAGVP------HPRKGSIKYGLMKAGGGRGGD 205
Query: 339 EVMEC----KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
E M C K +P+A +A + W + ++ +TGRTHQ+RA +A G
Sbjct: 206 EKMICVHPAKMADFPEAK--RAQTDYFVLWFLGNRLSWMALEPVTGRTHQLRAHMAEMGH 263
Query: 395 PIVGDSMY 402
PI+GD Y
Sbjct: 264 PIIGDGKY 271
>gi|308177850|ref|YP_003917256.1| pseudouridylate synthase [Arthrobacter arilaitensis Re117]
gi|307745313|emb|CBT76285.1| pseudouridylate synthase [Arthrobacter arilaitensis Re117]
Length = 314
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 47/246 (19%)
Query: 171 SIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV 228
+ G+T+ K+ RI DQ+V V + P+ P ++ +IIA + +V
Sbjct: 47 QVNGRTI---SKSLRIKVGDQLV-------VTIPPQADPLEIKVEKVEELKIIADDDDYV 96
Query: 229 VLDKPAG------------TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
V+DKP G T VG + A+ G+ H++D T G
Sbjct: 97 VIDKPVGVAAHPSPGWVGPTVVGALMAEGYNITTSGAAERQGIV------HRLDVGTSGL 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
+V+A+T+ + R +E+ KK+Y A+ LP + PI P W
Sbjct: 151 MVVAKTERAYTELKRAFKERTPKKIYHAVVQG-LPDPLQGTIDAPIGRHP---GHDW--- 203
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ V++ + +V IE G S ++ L TGRTHQ+R +A G P
Sbjct: 204 KFAVLDGGR-----DSVTHYKVIEAFGRASL-----VEVHLETGRTHQIRVHFSAFGHPC 253
Query: 397 VGDSMY 402
VGD Y
Sbjct: 254 VGDQTY 259
>gi|120436437|ref|YP_862123.1| pseudouridylate synthase [Gramella forsetii KT0803]
gi|117578587|emb|CAL67056.1| pseudouridylate synthase [Gramella forsetii KT0803]
Length = 232
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMR 320
L H++D T G V+ ++T + ++ ++KK KK Y A+ AP G + H+M+
Sbjct: 63 LGVVHRLDRPTSGIVLFSKTSKALPRLNKLFQDKKAKKTYWAIVKNAPQEKSGELVHFMK 122
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
+ + Y + EV + KK + K D Y +I L TG
Sbjct: 123 RNSKQNK-----SYAHKNEVPDSKKAMLDYRLLKKL-----------DNYYLLEIDLHTG 166
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R+QL+A G+PI GD Y
Sbjct: 167 RHHQIRSQLSAIGSPIKGDLKY 188
>gi|348029689|ref|YP_004872375.1| pseudouridine synthase [Glaciecola nitratireducens FR1064]
gi|347947032|gb|AEP30382.1| pseudouridine synthase Rlu family protein [Glaciecola
nitratireducens FR1064]
Length = 238
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+++ +VL+KP G + + + I + AL L H++D+ T GC++
Sbjct: 3 KLVLDNPDFLVLNKPCGMPMHDSAEAIVP-----MAEALFNVDKLWLVHRLDSDTSGCIL 57
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
LA+ ++ + F ++ EK ++K YLAL + G + M+ + + W L
Sbjct: 58 LAKNKDAAAEFGKQFAEKTIQKYYLALIDSKPKKKQGTIKGDMK------KSRNGDWKLS 111
Query: 337 QLE----VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
V + D + E P+ C +K ++G+THQ+R L +
Sbjct: 112 TDNDNPAVTQFFSFVVKDPLQAPEINTEATMRPALRL---CMVKPISGKTHQIRVALKSL 168
Query: 393 GAPIVGDSMY 402
G+PI+GD Y
Sbjct: 169 GSPIIGDKRY 178
>gi|319762874|ref|YP_004126811.1| pseudouridine synthase [Alicycliphilus denitrificans BC]
gi|330824953|ref|YP_004388256.1| pseudouridine synthase [Alicycliphilus denitrificans K601]
gi|317117435|gb|ADU99923.1| pseudouridine synthase [Alicycliphilus denitrificans BC]
gi|329310325|gb|AEB84740.1| pseudouridine synthase [Alicycliphilus denitrificans K601]
Length = 225
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 22/192 (11%)
Query: 221 IAVTESHVVLDKPAGTS-VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+ ++ +VLDKPAG V G + ++S +T RA L H++D T G V++
Sbjct: 16 VHADDTLLVLDKPAGLLCVPGRGPDKQDSLST---RAQALWPDALIVHRLDQPTSGLVLM 72
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPL-----PVGIMTHYMRPINIAPRLVSEGWY 334
AR ++ V K Y A+ L G + PI + W
Sbjct: 73 ARGGAMQRALSHAFAQRLVHKRYQAVVAGLLRPARGSAGEWSEIALPI-------AADWE 125
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
L V++ + T + + ++ G +R +++ +TGRTHQ+R LAA G
Sbjct: 126 RRPLRVVDAGRGQ-ASLTRWRVLAHDEAGGTTR-----VELEPVTGRTHQLRVHLAALGH 179
Query: 395 PIVGDSMYMPAA 406
PI+GD++Y AA
Sbjct: 180 PILGDALYADAA 191
>gi|374703484|ref|ZP_09710354.1| pseudouridine synthase [Pseudomonas sp. S9]
Length = 297
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 19/204 (9%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
LRVH + P I + ++ + E +V+DKP V + +E++ ++A
Sbjct: 69 LRVHYF-REVPVELPIPFEEVVLHIDEHLMVVDKPHFLPVMPSGGYVEQTLQARLTKAFA 127
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318
+ H+ID T G V+ + + ++ RE+K+ K Y AL A LP +
Sbjct: 128 -NPDIVPLHRIDRHTAGLVLFSTNVQTRGLYQALFRERKMFKRYEALAKA-LP-DLTFPL 184
Query: 319 MRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 378
+R AP E ++ Q E + VP + + A + + W Y L
Sbjct: 185 LRRTRFAP---GEPFFRMQ----EIEGVPNTETRIEVAQKLGEH-WLYALYP-------L 229
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TG+ HQ+R LA+ GAPI D Y
Sbjct: 230 TGKKHQLRVHLASLGAPICNDPFY 253
>gi|319794856|ref|YP_004156496.1| pseudouridine synthase [Variovorax paradoxus EPS]
gi|315597319|gb|ADU38385.1| pseudouridine synthase [Variovorax paradoxus EPS]
Length = 220
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 42/202 (20%)
Query: 228 VVLDKPAGTS-VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG V G D+ ++ C ++RA+ H++D T G VV+AR+ E
Sbjct: 16 LVLEKPAGLLCVPGRGDD-KQDC--LSARAMHRWPDALIVHRLDMATSGLVVMARSLEMQ 72
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
+++V K Y A+ +P + E W + +M
Sbjct: 73 RALSAAFADRQVHKRYEAIVDGAMP-----------------MREDWSIIDAPLM----A 111
Query: 347 PWPDATVGKAYSIEDCGWPS----RDYAYECK---------IKLLTGRTHQVRAQLAACG 393
WP + K + G PS R A + ++ TGR+HQ+R L + G
Sbjct: 112 DWPRRPLQKT---DPAGKPSLTRWRALASSMQGEFSATHVLLEPETGRSHQLRVHLLSIG 168
Query: 394 APIVGDSMYMPAAIAQLSSPGL 415
PI+GD++Y AA+ Q +P L
Sbjct: 169 HPILGDALYGDAAV-QARAPRL 189
>gi|440294909|gb|ELP87849.1| ribosomal pseudouridine synthase, putative [Entamoeba invadens IP1]
Length = 407
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 105/264 (39%), Gaps = 33/264 (12%)
Query: 219 RIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+II T+ +V+DKP V G N F +LGL T LR H++D T G
Sbjct: 147 KIIKETQDFIVVDKPGSIPVHPCGRYRHN----TVVFIMASLGLKT-LRPVHRLDRMTSG 201
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
++LA++ + KI K+ K+YL + + I + E
Sbjct: 202 ILILAKSADAARRVGEKICSKQTAKVYLIRVRGKMSEMVTVEG----KIGRQSKKE---- 253
Query: 336 CQLEVMECKKVPWPDATVGKA--YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+++VM V D GKA E + + KL +GRTHQ+R L G
Sbjct: 254 -KIDVM----VQHIDEEKGKASKSQFEPLFYDEKSNTTVITGKLESGRTHQLRVHLKEIG 308
Query: 394 APIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQ----HGMEPSVA 449
P+ D +Y S+ + G + EY D K+ ++W + G +
Sbjct: 309 HPVANDPIY---GAKFDSTKHCDDDGIIESEYKG-DLKKWEKVDWCDECNKIKGDPEQLE 364
Query: 450 IGLQACHISWDDGECCYEARSPWW 473
I L A DGE +E PWW
Sbjct: 365 IYLHAWKYEI-DGE-KFETDVPWW 386
>gi|239906997|ref|YP_002953738.1| ribosomal large subunit pseudouridine synthase D/dephospho-CoA
kinase [Desulfovibrio magneticus RS-1]
gi|239796863|dbj|BAH75852.1| ribosomal large subunit pseudouridine synthase D/dephospho-CoA
kinase [Desulfovibrio magneticus RS-1]
Length = 554
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--------T 266
D +++ + +VL+KPAG ++ + + T +R L +R
Sbjct: 90 DGELKLLYLDGDVLVLNKPAGLTIHPASSQPD---GTLVNRLLHHFPDMRAMAGDRPGIV 146
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+T+ E++V K YLAL + RP
Sbjct: 147 HRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALV-----------HGRPER--- 192
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGK----AYSIEDCGWPSRD-YAYECKIKLLTGR 381
S+G + +L V K P A V K A S W + D A ++ + TGR
Sbjct: 193 ---SDG--VIELPVGRDPKHPTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGR 247
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R +AA G PIVGD++Y
Sbjct: 248 THQIRVHMAAMGHPIVGDAVY 268
>gi|58617049|ref|YP_196248.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
gi|58416661|emb|CAI27774.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
Length = 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ ++ +V++KP+G SV GG+ I S + R + ++ H++D T G ++
Sbjct: 92 IVYEDDNVLVINKPSGVSVQGGSKVKISISDVLDSIR---IGESMKIVHRLDKSTSGILM 148
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LAR + + +++KVKK YLALT C +
Sbjct: 149 LARNSRVSRLIMNEFKDRKVKKKYLALT-----------------------------CGI 179
Query: 339 EVMECKKVPWPDATVGKAYSIE-DCGWPSRDYAYECKIKLL------------TGRTHQV 385
+C ++ +P ++E + + + ++ L TGR HQ+
Sbjct: 180 PDDDCGQIDYPIVKKKHGITLEKNMSFVQQAVTMFSTLRKLPNDIGLLDLQPITGRKHQI 239
Query: 386 RAQLAACGAPIVGDSMY 402
R L+ G PIVGD Y
Sbjct: 240 RIHLSHIGCPIVGDVKY 256
>gi|329923371|ref|ZP_08278854.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF5]
gi|328941362|gb|EGG37655.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF5]
Length = 353
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 43/224 (19%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEES 248
V+AG + + + +R I+ E +VL+KPAG V G TD +
Sbjct: 59 VQAGDLVEIRMEQERSNDMLPQPMELHILYEDEHLLVLNKPAGVIVHPTHGHYTDTLANG 118
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK----KVKKLYLA 304
+ G R H++D T G +V+A+ + H+ + E+ V K Y+A
Sbjct: 119 VVHYWQEK-GWNYRFRAVHRLDQETSGVLVIAKN----AYIHQHVSEQMIAGTVDKRYVA 173
Query: 305 LTTA-PLPVGIMTHYMRPINIAP-----RLVSEGWYLCQLEVMECKKVPWPDATVGKAYS 358
P P G + PI+ P R+V+ Y C+ +P A++
Sbjct: 174 FVHGRPSPTGDID---GPIDRDPLEPHRRIVTPEGYPSLTRYRVCET--YPSASL----- 223
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++KL TGRTHQ+R + + G P++GD MY
Sbjct: 224 --------------VELKLETGRTHQIRVHMLSIGCPLIGDQMY 253
>gi|300775344|ref|ZP_07085206.1| ribosomal large subunit pseudouridine synthase D [Chryseobacterium
gleum ATCC 35910]
gi|300506084|gb|EFK37220.1| ribosomal large subunit pseudouridine synthase D [Chryseobacterium
gleum ATCC 35910]
Length = 225
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTT---DNIEESCATFAS--RALGLTTPLRTTHQIDNC 272
+II +V++K G V G +++ ES F A L H+ID
Sbjct: 3 EQIIYEDNHLLVVNKKVGQLVQGDKTGDESLLESIKNFIKIRDAKPGNVFLGLVHRIDRP 62
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G V+ A+T + S + ++ ++VKK Y A+ + I + RLV
Sbjct: 63 TSGLVIYAKTSKALSRLTQMVKNREVKKTYWAVVGKEM-----------IPQSQRLVH-- 109
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCG-WPSRDYAYECKIKLLTGRTHQVRAQLAA 391
YL + E K + +P AT G +I + D +I L TGR HQ+RAQL+
Sbjct: 110 -YLKKNE-KNNKAIVFPKATEGAKEAILTYHVIKTLDNYLLLEIDLETGRHHQIRAQLSK 167
Query: 392 CGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
G PI GD Y +P NP G
Sbjct: 168 TGVPIKGDLKY--------GAPRSNPDG 187
>gi|406575562|ref|ZP_11051262.1| pseudouridine synthase [Janibacter hoylei PVAS-1]
gi|404555029|gb|EKA60531.1| pseudouridine synthase [Janibacter hoylei PVAS-1]
Length = 304
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E VV+DKP S ++ +S LGL L H++D T G ++L
Sbjct: 95 VLHRDERLVVVDKPPFLSTIPRGRHVRQSVTVRLRDELGLPE-LSPLHRLDRVTSGVLLL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAP------LPVGIMTHYMRPINIAPRLVSEGW 333
A + + + ++V+K YLAL AP P + H + + G
Sbjct: 154 ATERRWRGPYQSLFEHRQVRKTYLAL--APRRDELTFPCTVRNHIAK---------TRGV 202
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+ Q+ PDA V IE Y ++ TGRTHQ+R L G
Sbjct: 203 WQAQVV---------PDAPVNAVTDIEVEARLGDLAVY--RLTPHTGRTHQLRLHLHGLG 251
Query: 394 APIVGDSMY---MPAAIAQLSSP 413
PIVGD +Y + ++ S+P
Sbjct: 252 IPIVGDPLYPEVLDVSVDDFSTP 274
>gi|354807049|ref|ZP_09040525.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
gi|354514429|gb|EHE86400.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
Length = 309
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRTTHQIDNCTE 274
+++ + +V+DKPA + ++ + A F + L + + ++D T
Sbjct: 79 KVVFEDDHFLVVDKPAFVASLPAPNHPHNTMANFVKQYLIDQNAESQAVHVVTRLDRDTS 138
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVSEG 332
G ++ + S+ ++++ K+++K Y+A+ + + + H RPI S+
Sbjct: 139 GLMMFTKHGFAHSLLDKQLQSKELQKTYVAIASGDMRLDYPQHAWIDRPIK-----RSDD 193
Query: 333 WYLCQLEVMECKKVP---WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+Y+ ++ + K+ W + AY + A K+KLLTGRTHQ+R
Sbjct: 194 FYMRRVVGVGGKRSLTEYWQE-----AYGTD---------ATLVKLKLLTGRTHQIRVHF 239
Query: 390 AACGAPIVGDSMY 402
A+ G P++GD++Y
Sbjct: 240 ASLGHPLIGDNLY 252
>gi|312870084|ref|ZP_07730220.1| pseudouridine synthase, RluA family [Lactobacillus oris PB013-T2-3]
gi|311094387|gb|EFQ52695.1| pseudouridine synthase, RluA family [Lactobacillus oris PB013-T2-3]
Length = 289
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 41/217 (18%)
Query: 228 VVLDKPAGTSV--GGTTDNIEESCATFASRALGL-----TTPLR--TTHQIDNCTEGCVV 278
+V+DKPAG S G TT N T +R G + LR ++D T G ++
Sbjct: 88 LVVDKPAGVSSIPGPTTSN-----GTILNRVKGYLEEQGSEDLRPHLITRLDRFTSGLLL 142
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+A+ S+ +++++ ++ K Y A+ + H + IA R EG
Sbjct: 143 VAKHHVASSMISQQVQQHRMLKEYTAVVSGRFA---DDHGVIDQPIARR---EG------ 190
Query: 339 EVMECKKVPWPDATVG-KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ +V PD Y +ED G D+A +++L TGRTHQ+R +A+ G P++
Sbjct: 191 ---QVARVIAPDGQRAVTEYWVEDQGV---DWA-RLRLQLHTGRTHQIRVHMASAGHPLI 243
Query: 398 GDSMY---MPAAIAQLSSPG----LNPFGKCQKEYAS 427
GD +Y M A QL L+PF + Q + S
Sbjct: 244 GDHLYGGDMTRADHQLLHASKISFLDPFSQKQLTFTS 280
>gi|326780284|ref|ZP_08239549.1| pseudouridine synthase [Streptomyces griseus XylebKG-1]
gi|326660617|gb|EGE45463.1| pseudouridine synthase [Streptomyces griseus XylebKG-1]
Length = 312
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 21/208 (10%)
Query: 195 AGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS 254
AG YL H + F + + R++ E VV DKP + +I E+
Sbjct: 78 AGRYLWFH---RDFAPEEPVPFPVRVVYRDERIVVADKPHFLATMPRGRHITETAVARLR 134
Query: 255 RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
R L L L+ H++D T G V+ E + R+++V+K Y AL V +
Sbjct: 135 RELELPA-LQPAHRLDRLTAGLVLFVVRPEDRGAYQTLFRDRRVRKEYEALAPYDPDVAL 193
Query: 315 MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECK 374
P + R+V E V+ ++ P + + +E G R +
Sbjct: 194 ------PRTVRSRIVKE------RGVLAAREEPGEANSESRVELVERRGGVGR-----YR 236
Query: 375 IKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ TGRTHQ+R + A G PIV D +Y
Sbjct: 237 LLPATGRTHQLRVHMNALGLPIVHDPLY 264
>gi|162148058|ref|YP_001602519.1| ribosomal large subunit pseudouridine synthase A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542674|ref|YP_002274903.1| RluA family pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786635|emb|CAP56217.1| putative ribosomal large subunit pseudouridine synthase A
[Gluconacetobacter diazotrophicus PAl 5]
gi|209530351|gb|ACI50288.1| pseudouridine synthase, RluA family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 325
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 22/189 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL-RTTHQIDNCTEGCVV 278
+I + +VL+KPAG V G I A P R H+ID T G ++
Sbjct: 92 VIYSDDQVIVLNKPAGLPVQGGPGIIHHVDAMLDGLKDQDDDPRPRLVHRIDRDTSGLLL 151
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWYLC 336
LART + R + V+K Y A+ P P G++ + + P
Sbjct: 152 LARTPGVAAKLAASFRGRDVRKTYWAIVVGRPSPASGVIDQPLARLGAGP---------G 202
Query: 337 QLEVMECKKVPWPDATVGKA---YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
L V+ +K DA A Y + D R ++ + LTGRTHQ+R A G
Sbjct: 203 ALTVVASRK----DADAAHALSEYEVLDAA--GRKLSW-LALSPLTGRTHQLRVHCEALG 255
Query: 394 APIVGDSMY 402
PI+GD Y
Sbjct: 256 TPILGDPKY 264
>gi|194761916|ref|XP_001963137.1| GF14093 [Drosophila ananassae]
gi|190616834|gb|EDV32358.1| GF14093 [Drosophila ananassae]
Length = 755
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 18/210 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 396 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 454
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
R+ + ++IR ++V+K Y+ P G++ PI +
Sbjct: 455 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGVV-ECKEPIEV-----------VSY 502
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
++ CK P + G S CK LTGR HQ+R L G PI+
Sbjct: 503 KIGVCKVSPKGKDCTTTFQKLSQNGTTS---VVLCKP--LTGRMHQIRVHLQYLGYPILN 557
Query: 399 DSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
D +Y L + GK E D
Sbjct: 558 DPLYNHEVFGPLKGRSGDIGGKSDDELIRD 587
>gi|390455671|ref|ZP_10241199.1| pseudouridine synthase [Paenibacillus peoriae KCTC 3763]
Length = 309
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 34/231 (14%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKR----FPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H I G LR+ + P PR YD+ +I+ + +V+ KPAG +V
Sbjct: 55 RLRHEKGIEHTGDRLRLALFPVMDLGVIPRWYDL----KILYEDDFCLVVHKPAGMAVHP 110
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
GG D ++ + A++ G+ +R H++D T G V+ A+ + ++R
Sbjct: 111 DGGVKDGPLTLDHAVASYYE-INGIHAAVRHVHRLDVDTTGPVLYAKNEFALLKLDEQMR 169
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVG 354
K + + Y+AL +P + T PI + K+ T
Sbjct: 170 AKAIDRRYVALVRGEVPSTLRT-LDWPIG---------------KDRHHKQRRRVSKTGQ 213
Query: 355 KAYSIEDCG--WPSRDYAYE-CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
KA + + G W S A + L TGRTHQ+R L+ G P++GD +Y
Sbjct: 214 KAVTHVELGEVWGSGPSAISLVYLTLDTGRTHQIRVHLSHAGFPLLGDVLY 264
>gi|260220462|emb|CBA28023.1| Ribosomal large subunit pseudouridine synthase A [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 224
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + ++ +VL+KPAG ++ C + RA + H++D T G VV+
Sbjct: 18 VVYMDDAMLVLNKPAGLLTVPGRGESKQDC--LSKRAQDVYPEALIVHRLDRDTSGLVVM 75
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
AR + ++ V K Y A+ LPV S+ W L
Sbjct: 76 ARGVNAQRAINLSFEKRLVDKRYEAVVIGLLPV-----------------SDDWEEIDLP 118
Query: 340 VMECKKVPWPDA---TVGKAYSIEDCG-WP--SRDYAYEC---KIKLLTGRTHQVRAQLA 390
++ V WP+ TV A + W S D C +++ +TGRTHQ+R +
Sbjct: 119 LL----VDWPNRPKRTVNHAEGQQALTRWRCISVDEVIGCSRVELEPVTGRTHQLRVHMQ 174
Query: 391 ACGAPIVGDSMY-MPAAIA 408
A G P++GD++Y P A+A
Sbjct: 175 ALGHPMLGDTLYATPEALA 193
>gi|326403197|ref|YP_004283278.1| putative pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|325050058|dbj|BAJ80396.1| putative pseudouridine synthase [Acidiphilium multivorum AIU301]
Length = 224
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
VV+DKPAG G ++E+ F G P H++D T GC+ +AR +
Sbjct: 14 VVIDKPAGLPSHRGRGGGPSVED---WFPRWRRGADGPW-LVHRLDADTAGCLAIARRKT 69
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
R +++V K Y A+ V H + +A R V GW + +
Sbjct: 70 TLVALQRAFAQRRVGKTYWAIVEG---VPAAAHGTIELALARRTVPGGWRVAPDPRGDPA 126
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
W G+ ++ +++ TGRTHQ+R A G PIVGD +Y
Sbjct: 127 ITDWRCLVAGQGRAL-------------LELRPRTGRTHQLRVHCAESGFPIVGDPLY 171
>gi|330846924|ref|XP_003295235.1| hypothetical protein DICPUDRAFT_160487 [Dictyostelium purpureum]
gi|325074072|gb|EGC28238.1| hypothetical protein DICPUDRAFT_160487 [Dictyostelium purpureum]
Length = 533
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 81/199 (40%), Gaps = 13/199 (6%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A+ + VV+DKP+ V +C F A L H++D T G ++
Sbjct: 254 KIVAMDDQVVVIDKPSSIPVHPCG-RFRHNCVLFILAAEHGINELYGVHRLDRLTSGLLM 312
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LART + +I+ V K Y A P+G I P +V + L
Sbjct: 313 LARTPDAAKKRASQIQSGDVSKQYFAKVVGKFPIGTDLPDGTVIVNQP-IVIQNMRLGIN 371
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
V E K P T K YS ++ S C K TGRTHQ+R L G PI
Sbjct: 372 HVGEGGK---PSVTHFKLYSYDE---KSNQSIVLCSPK--TGRTHQIRVHLKWLGYPITN 423
Query: 399 DSMY---MPAAIAQLSSPG 414
D +Y + L+S G
Sbjct: 424 DPLYNNDFRDSFKALTSDG 442
>gi|148259875|ref|YP_001234002.1| pseudouridine synthase [Acidiphilium cryptum JF-5]
gi|146401556|gb|ABQ30083.1| pseudouridine synthase [Acidiphilium cryptum JF-5]
Length = 224
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
VV+DKPAG G ++E+ F G P H++D T GC+ +AR +
Sbjct: 14 VVIDKPAGLPSHRGRGGGPSVED---WFPRWRRGADGPW-LVHRLDADTAGCLAIARRKT 69
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
R +++V K Y A+ V H + +A R V GW + +
Sbjct: 70 TLVALQRAFAQRRVGKTYWAIVEG---VPAAAHGTIELALARRTVPGGWRVAPDPRGDPA 126
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
W G+ ++ +++ TGRTHQ+R A G PIVGD +Y
Sbjct: 127 ITDWRCLAAGQGRAL-------------LELRPRTGRTHQLRVHCAESGFPIVGDPLY 171
>gi|73662254|ref|YP_301035.1| pseudouridylate synthase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494769|dbj|BAE18090.1| putative pseudouridylate synthase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E K+ ++Y A + LP+ +P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENKIDRIYKANVHSLLPI-------KPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K + C E +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSSTGQSAITHILNSKMIKEDVC---------ELEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + +L
Sbjct: 226 VHLAEIGHPVIGDPLYGNSTLRKLE 250
>gi|259501425|ref|ZP_05744327.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
gi|302190854|ref|ZP_07267108.1| hypothetical protein LineA_02435 [Lactobacillus iners AB-1]
gi|259167174|gb|EEW51669.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
Length = 283
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V+DKPAG TD C ++ LG + + H++D T G
Sbjct: 84 IIYENDDILVIDKPAGQKTHPNLYETDTALNDCTSY----LGYSPYI--VHRLDMLTNGL 137
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A A LP+G P+++
Sbjct: 138 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIDATNDISDNGTINLPIG-----DDPLDMRK 192
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK T K K++L TGRTHQ+R
Sbjct: 193 RMVRTDGLKAITHYQVVKK------TANKIL---------------VKLQLETGRTHQIR 231
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 232 VHLAAIGHPIIGDPLY 247
>gi|381207974|ref|ZP_09915045.1| pseudouridine synthase, RluA family protein [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 320
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 35/150 (23%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L T H++D T G V+ A+T + R+K+++K Y A+ LP
Sbjct: 130 LYTIHRLDRETSGVVLFAKTHQMAQQMAALFRDKQIRKEYRAVVAGSLP----------- 178
Query: 323 NIAPRLVSEGWYLCQLEVMECKKV-PWPDATVGKAYSIEDCGWPSRDYAYECK------- 374
+ E++ K + P +++ S+ + G PS + + K
Sbjct: 179 --------------EEEILVSKPIGPDSSSSIRIKQSVCENGKPSETHFRQLKPIGRCAY 224
Query: 375 --IKLLTGRTHQVRAQLAACGAPIVGDSMY 402
I +TGRTHQ+R AA G PIVGD +Y
Sbjct: 225 LQIHPMTGRTHQIRVHAAASGFPIVGDKLY 254
>gi|295131837|ref|YP_003582500.1| RNA pseudouridine synthase [Propionibacterium acnes SK137]
gi|417930611|ref|ZP_12573986.1| RNA pseudouridine synthase [Propionibacterium acnes SK182]
gi|291375421|gb|ADD99275.1| RNA pseudouridine synthase [Propionibacterium acnes SK137]
gi|340769995|gb|EGR92512.1| RNA pseudouridine synthase [Propionibacterium acnes SK182]
Length = 322
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 64 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 117
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 118 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 176
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L G +T + R++ E +++ ++VP
Sbjct: 177 FERR---EVVKKYRLVAPVVHDSAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 227
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 228 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 277
>gi|350563084|ref|ZP_08931907.1| pseudouridine synthase, RluA family [Thioalkalimicrobium aerophilum
AL3]
gi|349779950|gb|EGZ34291.1| pseudouridine synthase, RluA family [Thioalkalimicrobium aerophilum
AL3]
Length = 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 34/192 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + +V++KP G +V G + + A L + H++D T G ++L
Sbjct: 90 ILFEDDDLIVINKPPGMAVHGGS-GVSWGLIELVRNARPLAKRVELVHRLDRDTSGAIIL 148
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ H+++R+ +V K+Y AL P T +P+
Sbjct: 149 AKKMSVLRDLHQQVRDHQVTKVYWALVKGQWPKA-RTKVEQPL----------------- 190
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDY---------AYECKIKLLTGRTHQVRAQLA 390
+K P + + G PS Y A ++ L TGRTHQ+R A
Sbjct: 191 ----RKFTLPSGE--RRVEVHPEGKPSLSYVRVLADLAQASLLEVNLATGRTHQIRVHCA 244
Query: 391 ACGAPIVGDSMY 402
A PI GD Y
Sbjct: 245 ANDHPIAGDDKY 256
>gi|260905406|ref|ZP_05913728.1| ribosomal pseudouridine synthase [Brevibacterium linens BL2]
Length = 332
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 23/225 (10%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D +V G Y H + P I + ++ + +V+DKP + + E
Sbjct: 74 DAVVPGGFYF---FH-RPVPAEERIPFEISVVFEDDDLLVVDKPHFLASTPNGRFVRECV 129
Query: 250 ATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T A L P L H++D T G ++L++ E + R +++ V K Y AL
Sbjct: 130 VTRAR--LDFDQPDLVAIHRLDRVTAGLLILSKRPETRGRYQRLFQDRLVTKTYRALAAM 187
Query: 309 P-----LPVGIMTHYMRPINIAPRLVSEGW--YLCQLEVMECKKVP---WPDATVGKAY- 357
P LP+ + ++P L EG ++ ++ + P W DAT
Sbjct: 188 PPADLELPLVKESRLVKPRGGRQVLEVEGEPNAFSKISLLGERTPPSPRWSDATEPPPRR 247
Query: 358 SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
S+ +C PS E +++ LTG+THQ+R + + G PI+GD +Y
Sbjct: 248 SVGEC--PS---IGEYQLEPLTGKTHQLRVHMNSLGLPILGDPVY 287
>gi|417885826|ref|ZP_12529977.1| pseudouridine synthase, RluA family [Lactobacillus oris F0423]
gi|341594745|gb|EGS37429.1| pseudouridine synthase, RluA family [Lactobacillus oris F0423]
Length = 289
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 41/217 (18%)
Query: 228 VVLDKPAGTSV--GGTTDNIEESCATFASRALGL-----TTPLR--TTHQIDNCTEGCVV 278
+V+DKPAG S G TT N T +R G + LR ++D T G ++
Sbjct: 88 LVVDKPAGVSSIPGPTTSN-----GTILNRVKGYLEEQGSEDLRPHLITRLDRFTSGLLL 142
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+A+ S+ +++++ ++ K Y A+ + H + IA R EG
Sbjct: 143 VAKHHVASSMISQQVQQHRMLKEYRAVVSGRFA---DDHGVIDQPIARR---EG------ 190
Query: 339 EVMECKKVPWPDATVG-KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ +V PD Y +ED G D+A +++L TGRTHQ+R +A+ G P++
Sbjct: 191 ---QVARVIAPDGQRAVTEYWVEDQGV---DWA-RLRLQLHTGRTHQIRVHMASAGHPLI 243
Query: 398 GDSMY---MPAAIAQLSSPG----LNPFGKCQKEYAS 427
GD +Y M A QL L+PF + Q + S
Sbjct: 244 GDHLYGGDMTRADHQLLHASKISFLDPFSQKQLTFTS 280
>gi|397171948|ref|ZP_10495345.1| ribosomal large subunit pseudouridine synthase A [Alishewanella
aestuarii B11]
gi|396086428|gb|EJI84041.1| ribosomal large subunit pseudouridine synthase A [Alishewanella
aestuarii B11]
Length = 224
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
+ H++D T G V+L T++ S ++ + + + KLY A G ++ IN
Sbjct: 62 QVVHRLDYDTSGIVLLPLTKKALSALSKQFQARTISKLYTARVA-----GQLSAAAGEIN 116
Query: 324 --IAPRLVSEGWY-LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
IAP Y +CQL P T Y + D + + D + +++ +TG
Sbjct: 117 LPIAPDAERRPLYKICQL-------TGKPSLT---RYRVLD--YRAGDNSTLVELEPVTG 164
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIA 408
R+HQ+R LAA G PI+GDS+Y P IA
Sbjct: 165 RSHQLRLHLAAIGHPILGDSLYAPIDIA 192
>gi|334137306|ref|ZP_08510745.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
gi|333605168|gb|EGL16543.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
Length = 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 40/188 (21%)
Query: 228 VVLDKPAGTSVG----GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V++KPAG +V G + + A + + G + +R H++D T G V+ A+ +
Sbjct: 80 LVVNKPAGMAVHPSEPGQRGTLANAVAGYYE-STGQSCGVRHIHRLDQDTSGAVLYAKYE 138
Query: 284 EYCSIFHRKIREKKVKKLYLAL---------TTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
+ +REK + ++Y A+ T P+G H+ A R VS
Sbjct: 139 LPHLLLDEAMREKAIGRMYAAVCGGLPAPPAGTISAPIGKDRHHR-----ARRRVS---- 189
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
P DA V ++E RD A +++L TGRTHQ+R ++ G
Sbjct: 190 ------------PGGDAAVTHYRTVESF----RDAAL-LELRLETGRTHQIRVHMSHIGH 232
Query: 395 PIVGDSMY 402
P++GD++Y
Sbjct: 233 PLLGDALY 240
>gi|363756212|ref|XP_003648322.1| hypothetical protein Ecym_8220 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891522|gb|AET41505.1| Hypothetical protein Ecym_8220 [Eremothecium cymbalariae
DBVPG#7215]
Length = 379
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 41/195 (21%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ +S +V++KP G + + + L P+ H++D T G ++
Sbjct: 109 IVYEDDSILVINKPCGIPIHPIAYYYKNTLTEMLKD--NLNYPVFPCHRLDKITSGILIF 166
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ Q+ S+ +IRE+ +KKLYLA + G
Sbjct: 167 AKNQDTASVLQAQIRERTMKKLYLA------------------RVEGEFSKNG------- 201
Query: 340 VMECKKVPW----PDATVGKAYS-IED--CGWPSRDYAYECKIKL-----LTGRTHQVRA 387
C K P P T+ A+S ++D + DY L +GRTHQ+R
Sbjct: 202 --ACSKYPIYTFEPKKTLAGAFSQVKDSETEFLRIDYNESLNQSLVLCKPFSGRTHQIRI 259
Query: 388 QLAACGAPIVGDSMY 402
LA G PIV D Y
Sbjct: 260 HLARLGHPIVNDPFY 274
>gi|198283980|ref|YP_002220301.1| RluA family pseudouridine synthase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218668096|ref|YP_002426617.1| ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248501|gb|ACH84094.1| pseudouridine synthase, RluA family [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218520309|gb|ACK80895.1| ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 317
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 225 ESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+SH+ VLDKP+G +V G + + E+ A L H++D T GC++ +
Sbjct: 96 DSHLLVLDKPSGLAVHGGSGLSWGVIEALRQLRPDA----RELELVHRLDRDTSGCLIFS 151
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR--LVSEGWYLCQL 338
+ + H +R ++K YL L G R + +A R + G + ++
Sbjct: 152 KKRSALRALHEALRAGLMEKRYLVLAA-----GDWQGEARSVRLALRKNTLQSGERMVRV 206
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+ +E GKA A + L TGRTHQ+R L A G + G
Sbjct: 207 DPVE-----------GKAAHTHFLPLERFRGAVLLQADLDTGRTHQIRVHLQAIGHAVAG 255
Query: 399 DSMYMPAAIAQ 409
D Y AA Q
Sbjct: 256 DEKYGDAAFNQ 266
>gi|340354010|ref|ZP_08676805.1| ribosomal large subunit pseudouridine synthase [Prevotella pallens
ATCC 700821]
gi|339607930|gb|EGQ12853.1| ribosomal large subunit pseudouridine synthase [Prevotella pallens
ATCC 700821]
Length = 221
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 231 DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFH 290
DKP ++ + I+E A + LG+ H++D G VV A+T + S +
Sbjct: 28 DKPLSETI---KEWIKEKYAKPGNVFLGVV------HRLDRPVSGIVVFAKTSKALSRLN 78
Query: 291 RKIREKKVKKLYLALT-TAP-LPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPW 348
R +V+K Y A+ TAP +P +T+++ Y+ E+ K+
Sbjct: 79 NMFRNGEVRKTYWAMVQTAPNMPEATLTNWL-----VRNEKQNKSYVYNNEMPNAKQAIL 133
Query: 349 PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
T+G+ ++ ++ LLTGR HQ+R QLAA G PI GD Y
Sbjct: 134 KYKTIGQT-----------EHYTLLEVNLLTGRHHQIRCQLAAMGCPIKGDLKY 176
>gi|224025955|ref|ZP_03644321.1| hypothetical protein BACCOPRO_02702 [Bacteroides coprophilus DSM
18228]
gi|224019191|gb|EEF77189.1| hypothetical protein BACCOPRO_02702 [Bacteroides coprophilus DSM
18228]
Length = 223
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 82/204 (40%), Gaps = 34/204 (16%)
Query: 220 IIAVTESHVVL-DKPAGTSVGGTTDN-IEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
++ T S +V DK T + T ++E A + LG+T H++D G V
Sbjct: 12 VVNKTASEIVQGDKTGDTPLSETVKQYLKEKYAKPGNVFLGVT------HRLDRPVSGLV 65
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYL 335
V A+T + S + R +VKK Y A+ P +THY+ Y
Sbjct: 66 VFAKTSKALSRLNEMFRNGEVKKTYWAIVKNCPKEPEAELTHYL-----VRNEKQNKSYA 120
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
EV + KK +G + + Y ++ L TGR HQ+R QLA G P
Sbjct: 121 YDKEVKDSKKAVLHYRLIGHSVNY-----------YLLEVDLKTGRHHQIRCQLAKMGCP 169
Query: 396 IVGDSMYMPAAIAQLSSPGLNPFG 419
I GD Y SP NP G
Sbjct: 170 IKGDLKY--------GSPRSNPDG 185
>gi|171463176|ref|YP_001797289.1| pseudouridine synthase Rlu family protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192714|gb|ACB43675.1| pseudouridine synthase, RluA family [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 335
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 106/265 (40%), Gaps = 53/265 (20%)
Query: 153 QMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIV---EAGTYLRVHVHPKRFP 209
++RV K+ +P+ I+G VR RI Q+ A T R H + + P
Sbjct: 58 EVRVNKKRAEPTT----RLIEGDVVR--LPPVRIAEPAQMAAVNSAQTKFRAHGYSDKMP 111
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRT 265
++ E+ ++++KPAG +V G + A L +T P L
Sbjct: 112 ILFE----------DEALLIVNKPAGLAVHGGS-----GIALGVIETLRITRPELKFLEL 156
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR-PINI 324
H++D T G + LA+ + HR+IRE + K Y L + G T ++ P++
Sbjct: 157 VHRLDRDTSGVLFLAKKRSALVELHRQIREDQADKRYYLLAHGEIVQGAQTMQLKYPLH- 215
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDA-------TVGKAYSIEDCGWPSRDYAYECKIKL 377
L+ G +++ PD V KA E + +L
Sbjct: 216 -KYLLPNGERRVRVD---------PDGLPSHTALRVTKALKREGAAITL------AEAQL 259
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R L G I+GD Y
Sbjct: 260 KTGRTHQIRVHLQKLGHAILGDDKY 284
>gi|291528756|emb|CBK94342.1| Pseudouridylate synthases, 23S RNA-specific [Eubacterium rectale
M104/1]
Length = 244
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 26/152 (17%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG------------- 313
H++D EG +V A+ Q+ + R+I+E +K Y A + G
Sbjct: 55 HRLDQPVEGVMVFAKNQKAAASLSRQIKEHTTEKYYRAASRGQGVSGADKEEDNHDSAWH 114
Query: 314 IMTHYM---RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYA 370
+T Y+ + N + ++ SE L + V++ + + T + S +C
Sbjct: 115 TLTDYISFDKRTNTS-KITSEKDRLAKKAVLQYRVIS---VTPDRDSSQNEC------IR 164
Query: 371 YECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
E IKLLTGR HQ+R QLA G P++GD+ Y
Sbjct: 165 TEFDIKLLTGRHHQIRLQLAHIGYPLIGDTKY 196
>gi|89901537|ref|YP_524008.1| pseudouridine synthase [Rhodoferax ferrireducens T118]
gi|89346274|gb|ABD70477.1| ribosomal large subunit pseudouridine synthase A [Rhodoferax
ferrireducens T118]
Length = 215
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 41/198 (20%)
Query: 219 RIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
++I +S +VLDKP G SV G ++ ++ C ++RA L H++D T G +
Sbjct: 7 KVIYADKSLLVLDKPTGLLSVPGRGED-KQDC--LSARAQRLYPDALVVHRLDMATSGLM 63
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
V+AR + V+K Y+A+ L AP L + W +
Sbjct: 64 VMARGAAAQRALSLAFASRSVRKRYVAIVDGQL--------------APSL--QDWGVID 107
Query: 338 LEVMECKKVPWPDATVGKAYSIEDC--GWPS-----------RDYAYECKIKLLTGRTHQ 384
L ++ V WP+ + I D G PS D +++ +TGR+HQ
Sbjct: 108 LPII----VDWPE----RPRRIIDHQRGKPSVTYWRVLAHNTSDETTRVELEPVTGRSHQ 159
Query: 385 VRAQLAACGAPIVGDSMY 402
+R L A G IVGD++Y
Sbjct: 160 LRVHLLALGHAIVGDALY 177
>gi|88608500|ref|YP_506438.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
gi|88600669|gb|ABD46137.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
Length = 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 40/228 (17%)
Query: 190 DQIVEAGTYLRVHVHPKRFP----RCYDIDWNSRIIAVT----ESHVVLDKPAGTSVG-- 239
D + + +L++ P+ P + D + I ++ E+ + + KP G V
Sbjct: 55 DSLTLSANFLQILSSPREIPSDSSKVVDSKFVEFIASLMLYEDENVLAISKPFGFPVQSG 114
Query: 240 -GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
G T +I+ + + + R H++D T G ++ A+T + R + V
Sbjct: 115 YGITASIDNAMKS-------INPEYRVVHRLDKHTTGVLIFAKTLDAARELWRLFSNRLV 167
Query: 299 KKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA 356
KK YLA+ L G++ Y+ + EVM+C + + + +
Sbjct: 168 KKSYLAIVIGELKEKKGVVDCYINKVLFKGE-----------EVMQCNNIGNGEHAITQF 216
Query: 357 YSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLAACGAPIVGDSMY 402
+ I + + I+L LTGR HQ+R+Q+A+ G P++ D Y
Sbjct: 217 HVI-------KKFKNTSLIELFPLTGRKHQIRSQMASIGHPVLNDGKY 257
>gi|319954748|ref|YP_004166015.1| pseudouridine synthase [Cellulophaga algicola DSM 14237]
gi|319423408|gb|ADV50517.1| pseudouridine synthase [Cellulophaga algicola DSM 14237]
Length = 222
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Query: 217 NSRIIAVTESHVVLDKPAG--TSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCT 273
N ++ ++V++K AG + DN E F P + H++D T
Sbjct: 3 NLEVVEENNDYIVVNKTAGYISEKNPYEDNTIED-QLFKHLLQKKRKPYIGVIHRLDRVT 61
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G ++ A+ + F+ ++V+K YLA+ +P N LV+
Sbjct: 62 SGVLIFAKKKSVLVAFNELFSSRQVQKTYLAIVKN-----------KPANTKGDLVNF-- 108
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGW-----PSRDYAYECKIKLLTGRTHQVRAQ 388
+++ K D K+ DC ++ Y +++ TGR HQ+RAQ
Sbjct: 109 ------LVKNNKDKRADIIQTKSKESLDCSLSYEVIAKNNFGYLLEVQPKTGRFHQIRAQ 162
Query: 389 LAACGAPIVGDSMY 402
LA G PI+GD Y
Sbjct: 163 LAHIGLPIIGDEKY 176
>gi|284036309|ref|YP_003386239.1| pseudouridine synthase [Spirosoma linguale DSM 74]
gi|283815602|gb|ADB37440.1| pseudouridine synthase, RluA family [Spirosoma linguale DSM 74]
Length = 348
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 27/193 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRAL-----GLTTPLRTTHQIDN 271
I+ + +V++KPAG V G D + + + L G P H+ID
Sbjct: 97 IVFEDDDLLVINKPAGMVVHPAHGNWDGTLVNALVYHFQNLPTSRHGEVRP-GLVHRIDK 155
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPLP-VGIMTHYMRPINIAPRLV 329
T G +V+A+T+ + R+ E +++ Y ALT P P +G +T ++ +I R V
Sbjct: 156 DTSGLMVIAKTEFAMTYLARQFFEHTIERTYNALTWGVPNPQIGTITGFIGR-SIKDRKV 214
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
Q + K W V ++ED G+ + ECK++ TGRTHQ+RA
Sbjct: 215 -------QAIYDDESKGKW---AVTHYTTLEDLGYVA---LVECKLE--TGRTHQIRAHF 259
Query: 390 AACGAPIVGDSMY 402
G P+ D+MY
Sbjct: 260 KHIGNPLFNDAMY 272
>gi|406886048|gb|EKD33140.1| hypothetical protein ACD_76C00085G0003 [uncultured bacterium]
Length = 302
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D G +V A+ ++ + + + KK+Y+ L +P T +R +NIA
Sbjct: 134 HRLDRGASGVIVFAKNKKAFLHLKDQFQSRTAKKIYIVLVHGQMPKNFGT--LR-VNIA- 189
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R G + + E K+ + +V K Y R+Y+ ++ + TGRTHQ+R
Sbjct: 190 RSERTGKMVSRPMSQEGKEA-ITNYSVTKNY---------RNYSL-LEVHIETGRTHQIR 238
Query: 387 AQLAACGAPIVGDSMYMPAAIAQ 409
+ A G PI GD++YM + Q
Sbjct: 239 TTMQASGHPIAGDTLYMNRKLKQ 261
>gi|406663065|ref|ZP_11071139.1| Ribosomal large subunit pseudouridine synthase C [Cecembia
lonarensis LW9]
gi|405552882|gb|EKB48212.1| Ribosomal large subunit pseudouridine synthase C [Cecembia
lonarensis LW9]
Length = 236
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
ID+ I+ E ++V++KP S T D+ E+ A T + H++D T
Sbjct: 4 IDFKDLILFENEDYLVINKPPYLS---TLDDRHEA-QNILDLARTYTQDAQVCHRLDKET 59
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
GC+V+A+ QE + ++KV K+Y A+ H + + LV
Sbjct: 60 SGCLVIAKHQEAYRNIAIQFEDRKVSKIYHAVVEG-------VHEYKDV-----LVDRNI 107
Query: 334 YLCQLEVMECKKVPWPDATVGK------AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ + + K P T+ +Y++ +C K +TGR HQ+R
Sbjct: 108 HATNKGIAKITKEGKPAQTIFNTLRTYYSYTLVEC-------------KPITGRLHQIRV 154
Query: 388 QLAACGAPIVGDSMY 402
LA +PI GD MY
Sbjct: 155 HLAHLKSPICGDEMY 169
>gi|424863979|ref|ZP_18287891.1| ribosomal large subunit pseudouridine synthase D [SAR86 cluster
bacterium SAR86A]
gi|400757300|gb|EJP71512.1| ribosomal large subunit pseudouridine synthase D [SAR86 cluster
bacterium SAR86A]
Length = 311
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 48/203 (23%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G + +ART+ + + F ++E+K+KK Y A+ VG + R +
Sbjct: 130 VHRLDKDTSGILAVARTEGFRNYFVSLLQERKIKKSYKAIV-----VGNVIGSFRINDPI 184
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE----CKIKLLTGR 381
R + ++ + GK E + ++ +Y+ + +LTGR
Sbjct: 185 GR-------------DKNNRLKMAIRSDGK----ESESFIQKEKSYDNYSLLNVSILTGR 227
Query: 382 THQVRAQLAACGAPIVGDSMYMPAA-IAQLSSPGL--------------------NPFGK 420
THQ+R LA PI+GD Y PA IA+ +SP L +P+ K
Sbjct: 228 THQIRVHLANNQLPIIGDKTYNPAGRIAKNTSPELIEIIRNFPRQALHSFELTFFDPYLK 287
Query: 421 CQKEYASDDDKEM-AVIEWISQH 442
+ SD K+M +++ I +H
Sbjct: 288 NDVSFFSDMHKDMLKLLDEIKKH 310
>gi|363580758|ref|ZP_09313568.1| pseudouridine synthase [Flavobacteriaceae bacterium HQM9]
Length = 230
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 221 IAVTESHVV-LDKPAGTSV-GGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTE 274
I ++H++ ++K AG V G T ++ S A P L H++D T
Sbjct: 12 ILYEDNHIIAINKRAGDIVQGDQTGDMPLSEVVKQYIAKKYNKPGAVFLGVVHRLDRPTS 71
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALT--TAPLPVGIMTHYMRPINIAPRLVSEG 332
G ++ ART + + ++ EKK +K Y A+ T P P G + H+++ R +
Sbjct: 72 GVIIFARTSKAVTRLNKAFAEKKTQKTYWAVVSPTPPKPEGNLLHFLK------RNTKQN 125
Query: 333 WYLCQL-EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ EV E KK + K D +I+L TGR HQ+RAQL
Sbjct: 126 KSYAHIKEVPESKKASLSYKLLKKL-----------DNFSLLEIELHTGRHHQIRAQLNK 174
Query: 392 CGAPIVGDSMY 402
G I GD Y
Sbjct: 175 IGCSIKGDLKY 185
>gi|385323347|ref|YP_005877786.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C; rRNA pseudouridylate synthase C) [Neisseria
meningitidis 8013]
gi|261391734|emb|CAX49183.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C; rRNA pseudouridylate synthase C) [Neisseria
meningitidis 8013]
Length = 330
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N RL
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVRLP 195
Query: 330 SEGWYLCQLEVM-ECKKVPWPDATVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M + TV + S G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSEDGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|416068215|ref|ZP_11582694.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348001249|gb|EGY42000.1| pseudouridine synthase Rlu family protein [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 229
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV D+ + ++ LG+ + H++D T G ++LA ++
Sbjct: 17 IVINKPNGISV--HKDDADIGLTRLVAQQLGVPQ-VWLVHRLDKVTSGLLMLALNEQAAV 73
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+K +++K YLAL T +P R+ + + + ++
Sbjct: 74 TLSQKFAHHQIQKTYLALAT-----------HKPKKKQGRISGD--------MQKARRGA 114
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAPIVGDSMY 402
W + ++ D + SR A ++ +L TG+THQ+R + + G+PI+GD++Y
Sbjct: 115 WKLTQSKENPAVTD--FVSRSLAPNLRLFILQPKTGKTHQLRVAMKSLGSPILGDALY 170
>gi|227889491|ref|ZP_04007296.1| pseudouridylate synthase RluD [Lactobacillus johnsonii ATCC 33200]
gi|227849969|gb|EEJ60055.1| pseudouridylate synthase RluD [Lactobacillus johnsonii ATCC 33200]
Length = 266
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 43/187 (22%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G T N+ E A L H++D T G +++A+
Sbjct: 76 LVINKPTGQK---THPNLNEEDTALNDCATYLGYSPFIVHRLDMLTSGLLLVAKNPAVVP 132
Query: 288 IFHRKIREKKVKKLYLA-LTTAP---------LPVGIMTHYMRPINIAPRLVSEGWY--L 335
I +R++ +K + + YLA ++ +P LP+G H R R+V + +
Sbjct: 133 ILNRQLTDKTLHREYLAWISNSPQIKYTGIIDLPIGHDPHDQRK-----RMVRQDGQKAV 187
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
EV++ K D + K+ L TGRTHQ+R LAA GAP
Sbjct: 188 THYEVIKRDK----DRIL-------------------VKLTLETGRTHQIRVHLAALGAP 224
Query: 396 IVGDSMY 402
I+GD +Y
Sbjct: 225 IIGDPLY 231
>gi|363898486|ref|ZP_09325009.1| hypothetical protein HMPREF9625_00026 [Oribacterium sp. ACB1]
gi|395208045|ref|ZP_10397382.1| RNA pseudouridine synthase [Oribacterium sp. ACB8]
gi|361960953|gb|EHL14183.1| hypothetical protein HMPREF9625_00026 [Oribacterium sp. ACB1]
gi|394706253|gb|EJF13772.1| RNA pseudouridine synthase [Oribacterium sp. ACB8]
Length = 353
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 41/220 (18%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS---RALGLTTPL--RTTHQIDNCTE 274
I+ E ++L+KPAG + + E + A AS + + P R H++D T
Sbjct: 94 IVYEDEDILLLNKPAGIPSHPSPGHYEGTLAGAASYYYKEIKGIQPFVCRMIHRLDLDTS 153
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPV----------- 312
G ++L + + S+ ++ +R ++++ Y A TT+P V
Sbjct: 154 GLLLLGKNKFSGSLLNQDMRAGRIERCYTAFCHGNPALAFENTTSPYSVSKENAKNSGNL 213
Query: 313 GIMTHYMRPINIAPRLVSEGWYL--------CQLEVMECKKVPWPDA--TVGKAYSIEDC 362
GI + P L G L + E M ++V + + V S+E
Sbjct: 214 GIPDSLPTSLKTLPGLEKNGDILRISAPIQRVENEYM-LREVHFQNGQEAVTNILSVEY- 271
Query: 363 GWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+P +D++ K++L TGRTHQ+R L+ G P++GDS+Y
Sbjct: 272 -FPEKDFS-RIKLRLETGRTHQIRVHLSYIGCPLLGDSLY 309
>gi|354594975|ref|ZP_09013012.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
gi|353671814|gb|EHD13516.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
Length = 222
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 221 IAVTESH-VVLDKPAG----TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I ++H ++++KPAG T+ T ++E+ + R G H++D T G
Sbjct: 12 ILFQDNHFIIINKPAGMPVYTNRHSTQKSVEDYFPLLSKRKDGPWL----VHRLDQDTAG 67
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
C+V+A ++ +K+V K+Y A+ P H P+
Sbjct: 68 CLVIALRKQALINAQSCFEKKQVTKIYWAIVKGK-PSENSGHINAPL------------- 113
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
L+V + K+ G+A S + S +++LLTGRTHQ RA A G P
Sbjct: 114 --LKVTKDKQWSMQQDPKGQAASTKWKLLGSNGDISCLELQLLTGRTHQARAHCAILGHP 171
Query: 396 IVGDSMYMP 404
I+GD++Y P
Sbjct: 172 IIGDTIYNP 180
>gi|422386731|ref|ZP_16466848.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL096PA2]
gi|422393897|ref|ZP_16473944.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL099PA1]
gi|422423911|ref|ZP_16500862.1| RNA pseudouridine synthase [Propionibacterium acnes HL043PA1]
gi|422461005|ref|ZP_16537639.1| RNA pseudouridine synthase [Propionibacterium acnes HL038PA1]
gi|422475606|ref|ZP_16552051.1| RNA pseudouridine synthase [Propionibacterium acnes HL056PA1]
gi|422476173|ref|ZP_16552612.1| RNA pseudouridine synthase [Propionibacterium acnes HL007PA1]
gi|422485076|ref|ZP_16561443.1| RNA pseudouridine synthase [Propionibacterium acnes HL043PA2]
gi|422520231|ref|ZP_16596273.1| RNA pseudouridine synthase [Propionibacterium acnes HL045PA1]
gi|422525310|ref|ZP_16601312.1| RNA pseudouridine synthase [Propionibacterium acnes HL083PA1]
gi|422527760|ref|ZP_16603747.1| RNA pseudouridine synthase [Propionibacterium acnes HL053PA1]
gi|422559616|ref|ZP_16635344.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA1]
gi|313811717|gb|EFS49431.1| RNA pseudouridine synthase [Propionibacterium acnes HL083PA1]
gi|313832484|gb|EFS70198.1| RNA pseudouridine synthase [Propionibacterium acnes HL007PA1]
gi|313832710|gb|EFS70424.1| RNA pseudouridine synthase [Propionibacterium acnes HL056PA1]
gi|314975148|gb|EFT19243.1| RNA pseudouridine synthase [Propionibacterium acnes HL053PA1]
gi|314977558|gb|EFT21653.1| RNA pseudouridine synthase [Propionibacterium acnes HL045PA1]
gi|314985095|gb|EFT29187.1| RNA pseudouridine synthase [Propionibacterium acnes HL005PA1]
gi|315096956|gb|EFT68932.1| RNA pseudouridine synthase [Propionibacterium acnes HL038PA1]
gi|327332450|gb|EGE74185.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL096PA2]
gi|327446775|gb|EGE93429.1| RNA pseudouridine synthase [Propionibacterium acnes HL043PA2]
gi|327448784|gb|EGE95438.1| RNA pseudouridine synthase [Propionibacterium acnes HL043PA1]
gi|328759846|gb|EGF73436.1| RNA pseudouridylate synthase family protein [Propionibacterium
acnes HL099PA1]
Length = 281
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 28/236 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V E+ +TFR D T++ H + P + I+ E +V+DK
Sbjct: 23 EGRFVDESGRTFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 76
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSI 288
P S ++ ES LGL L H++D T G ++L R ++ Y I
Sbjct: 77 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEI 135
Query: 289 FHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F R+ + VKK L G +T + R++ E +++ ++VP
Sbjct: 136 FERR---EVVKKYRLVAPVVHDSAGEGVTATKSGWQVRSRIIKE------RGILQAREVP 186
Query: 348 W-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P+A A E GW YE + TGRTHQ+R + GAPIV D Y
Sbjct: 187 GVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 236
>gi|156846788|ref|XP_001646280.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156116955|gb|EDO18422.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 612
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 22/199 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G V T + + LG + + +++D T G + LA+T +
Sbjct: 200 LVIDKPSGIPVHPTGRFRFNTITKILEKKLGYS--VHPCNRLDKLTSGLMFLAKTPKGAD 257
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK--K 345
+++ ++V K Y+A PVG +T + PR+ +C LE K K
Sbjct: 258 EMADQLKAREVTKEYVARVVGEFPVGEVTVEKPVKTVDPRVSLNS--VCSLEDENAKHAK 315
Query: 346 VPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPA 405
+ + SI C K LTGRTHQ+R L G PI D +Y
Sbjct: 316 TIFNRVSYDGKTSIVKC-------------KPLTGRTHQIRVHLQYIGFPIANDPIY--- 359
Query: 406 AIAQLSSPGLNPFGKCQKE 424
+ + PGL G E
Sbjct: 360 SNPHVWGPGLGNGGDADFE 378
>gi|83593991|ref|YP_427743.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|386350743|ref|YP_006048991.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
gi|83576905|gb|ABC23456.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|346719179|gb|AEO49194.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
Length = 330
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Query: 219 RIIAVTESH-VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R I ++H +V++K AG +V G T S A G TP R H++D T G +
Sbjct: 94 RAILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLADGGETP-RLVHRLDKDTSGVL 152
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG-WYLC 336
VLARTQ R ++ K+Y A+ P+ T I A V+ G
Sbjct: 153 VLARTQAAARALTSAFRSREALKVYWAIVVGRPPMLQGT-----IKGALAKVAGGRGERM 207
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
++ E K+ V +A C W ++ TGRTHQ+R G PI
Sbjct: 208 EINEEEGKRAVTDFRVVDQAAKA--CAW--------VELHPRTGRTHQLRVHCLEMGTPI 257
Query: 397 VGDSMY 402
+GD Y
Sbjct: 258 LGDGKY 263
>gi|407003108|gb|EKE19731.1| hypothetical protein ACD_8C00118G0003 [uncultured bacterium]
Length = 315
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +V+AR + + + ++V+K YLA+T GI I A
Sbjct: 140 VHRLDKDTSGLIVVARNGKAFNALKANFKNREVEKKYLAITK-----GIFKEKEGVIEKA 194
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTH 383
+ Y Q+ K +A V +E+CG DY+ +++L TGRTH
Sbjct: 195 --IAKSSSYRKQVIARNNTKTIIREA-VTNFRVVEECG----DYSM---VEVLPKTGRTH 244
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R LA+ G PIVGD +Y
Sbjct: 245 QIRIHLASIGHPIVGDVVY 263
>gi|336322491|ref|YP_004602458.1| RluA family pseudouridine synthase [Flexistipes sinusarabici DSM
4947]
gi|336106072|gb|AEI13890.1| pseudouridine synthase, RluA family [Flexistipes sinusarabici DSM
4947]
Length = 307
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDN--------IEESCATFASRALGLTTPLRT 265
+D N RI+ + V+DKPAG +V + N + S + AS P
Sbjct: 78 VDLNLRIVYENGWYAVVDKPAGIAVHPSESNNDVTLVNALLYSLESVASEGEEDDRP-GI 136
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +++A+T + + +K+ K Y + A P+ + +
Sbjct: 137 VHRLDKDTSGLLIVAKTFDAKKKLQGLFKNRKISKKYTCIC-AGNPIENIYEVENMMGRH 195
Query: 326 P------RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
P ++ EG + V+ ++ + A++ ++K+ T
Sbjct: 196 PVTRYKMAVLKEGGRFAKSRVVVMERF---------------------ESAFKAEVKIFT 234
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R +A G PI+GDS+Y
Sbjct: 235 GRTHQIRVHMAHLGFPIIGDSLY 257
>gi|290961710|ref|YP_003492892.1| RNA pseudouridine synthase [Streptomyces scabiei 87.22]
gi|260651236|emb|CBG74358.1| putative RNA pseudouridine synthase [Streptomyces scabiei 87.22]
Length = 305
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P + +D I+ + VV+DKP + +I E+ R L + T L
Sbjct: 65 PHEVPVPFPLD----IVYRDDHIVVVDKPHFLATTPRGSHITETALARLRRELAVPT-LS 119
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G V+ + R++ V K Y A+ AP ++ P +
Sbjct: 120 AAHRLDRLTAGLVLFTVRPGERGAYQSLFRDRLVTKEYEAV--APYDPSVVL----PCTV 173
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R+V E + EV E + P+A G G P+R ++ TG+THQ
Sbjct: 174 RSRIVKERGVMAAREV-EGE----PNAVSGVELLDRRAGGPAR-----YRLLPRTGQTHQ 223
Query: 385 VRAQLAACGAPIVGDSMY 402
+RA +A+ G PI+GD +Y
Sbjct: 224 LRAHMASLGLPILGDPLY 241
>gi|383649783|ref|ZP_09960189.1| ribosomal pseudouridine synthase [Streptomyces chartreusis NRRL
12338]
Length = 308
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GT++ H + P + + ++ E VV+DKP + ++ E+ R
Sbjct: 56 GTFVWFH---RELPHEVPVPFPLEVVYRDEHIVVVDKPHFLATTPRGSHVAETALARLRR 112
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
L + T L H++D T G V+ E + R++ V+K Y A+ AP G++
Sbjct: 113 ELDIPT-LAAAHRLDRLTAGLVLFTVRPEERGAYQTLFRDRLVRKEYEAV--APYDPGLV 169
Query: 316 THYMRPINIAPRLVSEGWYLCQLEVM----ECKKVPW----PDATVGKAYSIEDCGWPSR 367
P + R+V E L EV +V PD + G A
Sbjct: 170 L----PRTVRSRIVKERGELTAREVAGEPNAVSRVELVDHRPDGSGGLA----------- 214
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++ TG+THQ+R LAA G PI+GD +Y
Sbjct: 215 ----RYRLVPGTGQTHQLRVHLAALGVPILGDPLY 245
>gi|257061765|ref|YP_003139653.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8802]
gi|256591931|gb|ACV02818.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8802]
Length = 306
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 27/238 (11%)
Query: 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLD 231
I G+ + Q T D ++ G L H P + P D+ ++ +V+
Sbjct: 42 ISGQILLNGQPTTP----DTPLQPGQCLSYHRPPWQEP---DVPLAFEVLYEDVDVLVVA 94
Query: 232 KPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHR 291
KP+G V +E + R TP H++ T G ++LAR+ S +
Sbjct: 95 KPSGLPVLPGGGFLEHTLLGQLKRLYPQETP-TPIHRLGRGTSGLMLLARSPLAASHLSK 153
Query: 292 KIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPD 350
++R+ ++ K+Y AL A LP H +PI P V Y
Sbjct: 154 QMRQGQMTKVYHALVGAGDLPHQFSIH--QPIGKIPHPVLGYVY---------------G 196
Query: 351 ATVGKAYSIEDCGWPSRD-YAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
AT ++ DC R ++++ TGR HQ+R LA+ G P++GD +Y I
Sbjct: 197 ATPDGLFAHSDCRVLQRSTQGTLVEVRIFTGRPHQIRIHLASVGYPLLGDPLYEVGGI 254
>gi|299142856|ref|ZP_07035984.1| ribosomal large subunit pseudouridine synthase family protein
[Prevotella oris C735]
gi|298575724|gb|EFI47602.1| ribosomal large subunit pseudouridine synthase family protein
[Prevotella oris C735]
Length = 221
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G VV A+T + + ++ R+ +V K Y A+T P P G ++H++
Sbjct: 51 LGVVHRLDRPVTGLVVFAKTSKALTRLNKMFRDGEVHKTYWAITKNLPPQPEGTLSHWL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK +G++ D+ ++ L+TG
Sbjct: 110 ----VRNEKQNKSYAYDHEVPHSKKAILKYRLIGQS-----------DHYCLLEVNLMTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSP 413
R HQ+R QLA G PI GD Y AQ S+P
Sbjct: 155 RHHQIRCQLAHMGCPIKGDLKYG----AQRSNP 183
>gi|366998465|ref|XP_003683969.1| hypothetical protein TPHA_0A04620 [Tetrapisispora phaffii CBS 4417]
gi|357522264|emb|CCE61535.1| hypothetical protein TPHA_0A04620 [Tetrapisispora phaffii CBS 4417]
Length = 396
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 12/189 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I ++ ++DKP G V T + + +P ++ID T G ++
Sbjct: 117 LIYEDDNLFIIDKPNGIPVHPTGQFYKNTLTEIFKTHGKTVSP---CYRIDKVTSGLLIF 173
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA------PRLVSEGW 333
A+ Q S KI E+ + K Y A P + + NI+ P + +
Sbjct: 174 AKNQVAASDIQTKISERTMNKYYFARVKGKFPGTLSNIFGDSYNISDIIQQDPVIENSSI 233
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
Y +L+ V Y I+ +P D++ K LTGRTHQ+R LA G
Sbjct: 234 YTVELKKGSLAAFSPTREAVTHFYPIK--YYPDCDHSV-VLCKPLTGRTHQIRIHLARLG 290
Query: 394 APIVGDSMY 402
PIV D Y
Sbjct: 291 FPIVNDPFY 299
>gi|429753319|ref|ZP_19286128.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
326 str. F0382]
gi|429173985|gb|EKY15490.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
326 str. F0382]
Length = 239
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 225 ESHVV-LDKPAGTSV-GGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVV 278
++HV+ ++K AG V G T +I S A P L H++D T G V+
Sbjct: 29 DNHVIAVNKRAGDIVQGDKTGDIPLSDIVKAYLKKKYNKPGEVFLGVVHRLDRPTTGVVL 88
Query: 279 LARTQEYCSIFHRKIREKK-VKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYL 335
A+T + S + K+ V+K Y AL A P G +TH++ + V+
Sbjct: 89 FAKTSKALSRLNAMFANKEEVQKTYWALVDAAPPAEEGTLTHWLVRNEKQNKSVAH---- 144
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
Q EV KK + K Y D Y +I L+TGR HQ+RAQLAA G
Sbjct: 145 -QKEVQHSKKAVLHYKLL-KTY----------DRYYLLEIDLITGRHHQIRAQLAAIGLH 192
Query: 396 IVGDSMY 402
I GD Y
Sbjct: 193 IKGDLKY 199
>gi|421849506|ref|ZP_16282485.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
gi|371459693|dbj|GAB27688.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
Length = 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 219 RIIAVTESHV-VLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+++ + HV VL+KPAG +V GG R P R H+ID T G
Sbjct: 90 KMVVYQDKHVIVLNKPAGLAVQGGPGITKHVDMMLDGLREEDDPRP-RLVHRIDKDTSGL 148
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWY 334
++LART + R + VKK+Y A+ P P+ G + + + P ++
Sbjct: 149 LLLARTPGVAAKLAASFRGRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGSITVAAD 208
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ + V Y + D +R +++ ++ LTGRTHQ+R + G
Sbjct: 209 RKDADAQSARSV----------YEVLDSA--ARKFSW-LELSPLTGRTHQLRVHCESLGT 255
Query: 395 PIVGDSMYMPAA 406
PI+GD Y AA
Sbjct: 256 PILGDPKYGGAA 267
>gi|309806639|ref|ZP_07700635.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|309810106|ref|ZP_07703952.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|312870915|ref|ZP_07731020.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|315653177|ref|ZP_07906102.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|308166944|gb|EFO69127.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|308169605|gb|EFO71652.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|311093605|gb|EFQ51944.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|315489542|gb|EFU79179.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
Length = 292
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KPAG TD CA++ LG + + H++D T G
Sbjct: 93 IIYENDDVLVINKPAGQKTHPNLYETDTALNDCASY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A A LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIDATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK T K K++L TGRTHQ+R
Sbjct: 202 RMVRTDGLKAITHYQVVKK------TANKIL---------------VKLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|456385889|gb|EMF51442.1| RNA pseudouridine synthase [Streptomyces bottropensis ATCC 25435]
Length = 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E VV DKP + +I ++ R LGL T L H++D T G V+
Sbjct: 99 VVYRDEHVVVADKPHFLATTPRGSHITQTALARLRRELGLPT-LSAAHRLDRLTAGLVLF 157
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
E + R++ + K Y A+ AP I P + R+V E + E
Sbjct: 158 IVRPEERGAYQSLFRDRLITKEYEAV--APYDPSIAL----PRVVRSRIVKERGVMAARE 211
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + P+A G P+R +++ TG+THQ+R +A+ G PI+GD
Sbjct: 212 V-EGE----PNAVSGVELLDRQENGPAR-----YRLRPRTGQTHQLRVHMASLGLPILGD 261
Query: 400 SMY 402
+Y
Sbjct: 262 PLY 264
>gi|408411124|ref|ZP_11182307.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407874787|emb|CCK84113.1| Pseudouridine synthase [Lactobacillus sp. 66c]
Length = 286
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Query: 220 IIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ++ +V++KP G G CAT+ LG + + H++D T G
Sbjct: 82 IVYEDDNILVINKPKGQKTHPNQGENGTALNDCATY----LGYSPYI--VHRLDMLTGGL 135
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTT--APLPVGI-----MTHYMRPINIAPRLV 329
+++A+ I +R++ K +K+ Y+A +PL VG + P + R+V
Sbjct: 136 LLVAKNPAVVPILNRQLISKTLKRDYVAEVDLLSPLNVGAAGTISLKVGQDPDDQRKRMV 195
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
E T + ++++ +R + L TGRTHQ+R L
Sbjct: 196 REDGLRA--------------VTHYQVLAVDEAKRRAR-----VDLSLETGRTHQIRVHL 236
Query: 390 AACGAPIVGDSMYMPAA 406
AA G PIVGD +Y P A
Sbjct: 237 AASGWPIVGDPLYNPLA 253
>gi|379059113|ref|ZP_09849639.1| tRNA-pseudouridine synthase i [Serinicoccus profundi MCCC 1A05965]
Length = 292
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
P+ P ++ID ++ E+ + V+DKP + ++ ++ T R L L L
Sbjct: 68 PEEVPVPFEIDV---LLHDDETGLLVVDKPPFLATMPRGGHVAQTVVTRLRRDLDLPE-L 123
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
H++D T G ++L + S + R ++ ++ K Y AL AP + + P
Sbjct: 124 APVHRLDRLTSGVLLLTTRAQARSPYQRMVQAGRLAKTYEAL--AP----VREDLVLPTT 177
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
+ R+V E L Q V++ + P+A +E G RD ++ TGRTH
Sbjct: 178 VTDRIVKERGEL-QARVVDGE----PNART----HVELVG--ERDGLGHYRLTPTTGRTH 226
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R LA G PI GD +Y
Sbjct: 227 QLRLHLAGLGLPIEGDPLY 245
>gi|340363266|ref|ZP_08685607.1| ribosomal large subunit pseudouridine synthase C [Neisseria macacae
ATCC 33926]
gi|339886207|gb|EGQ75875.1| ribosomal large subunit pseudouridine synthase C [Neisseria macacae
ATCC 33926]
Length = 332
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 6/183 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAGT+V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGTAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H IR KK+YLAL LP H P + ++G + +
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLPNDSF-HVKLP--LFKYTGAQGEKMVR-- 210
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + V +S + + + L TGRTHQ+R L + PI GD
Sbjct: 211 VSEDGQSAHTIFRVLNRFSDDLLHQVGLSHLTLVQATLKTGRTHQIRVHLQSQQCPIAGD 270
Query: 400 SMY 402
Y
Sbjct: 271 ERY 273
>gi|238922884|ref|YP_002936397.1| putative 23S rRNA pseudouridine synthase [Eubacterium rectale ATCC
33656]
gi|238874556|gb|ACR74263.1| probable 23S rRNA pseudouridine synthase [Eubacterium rectale ATCC
33656]
Length = 244
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 26/152 (17%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG------------- 313
H++D EG +V A+ Q+ + R+I+E +K Y A + G
Sbjct: 55 HRLDQPVEGVMVFAKNQKAAASLSRQIKEHTTEKYYRAASRGQGVSGADKEEDNHDSAWH 114
Query: 314 IMTHYM---RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYA 370
+T Y+ + N + ++ SE L + V++ + + T + S +C
Sbjct: 115 TLTDYISFDKRTNTS-KITSEKDRLAKKAVLQYRVIS---VTPDRDSSQNEC------IR 164
Query: 371 YECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
E IKLLTGR HQ+R QLA G P++GD+ Y
Sbjct: 165 TEFDIKLLTGRHHQIRLQLAHIGYPLIGDTKY 196
>gi|421852911|ref|ZP_16285594.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371478910|dbj|GAB30797.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 219 RIIAVTESHV-VLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+++ + HV VL+KPAG +V GG R P R H+ID T G
Sbjct: 90 KMVVYQDKHVIVLNKPAGLAVQGGPGITKHVDMMLDGLREEDDPRP-RLVHRIDKDTSGL 148
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWY 334
++LART + R + VKK+Y A+ P P+ G + + + P ++
Sbjct: 149 LLLARTPGVAAKLAASFRGRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGSITVAAD 208
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ + V Y + D +R +++ ++ LTGRTHQ+R + G
Sbjct: 209 RKDADAQSARSV----------YEVLDSA--ARKFSW-LELSPLTGRTHQLRVHCESLGT 255
Query: 395 PIVGDSMYMPAA 406
PI+GD Y AA
Sbjct: 256 PILGDPKYGGAA 267
>gi|270007545|gb|EFA03993.1| hypothetical protein TcasGA2_TC014142 [Tribolium castaneum]
Length = 552
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++I V E VVLDKP V + ++ L LRT H++D T G ++
Sbjct: 192 KLIHVDEDLVVLDKPCSLPVHPCGRYRHNTVVFILAKEYNLKN-LRTIHRLDRLTSGLLL 250
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
R+ + +IR + V+K Y+ P I+ PI + VS +C++
Sbjct: 251 FGRSPKKARQMEHQIRNRLVQKEYVCRVEGEFPDEII-ECKEPIEV----VSYKIGVCKV 305
Query: 339 --EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ +C + + G+ + CK K TGR HQ+R L G P+
Sbjct: 306 SPKGKDCNTI------------FQKLGFNGKTSIVLCKPK--TGRMHQIRVHLQYLGYPV 351
Query: 397 VGDSMY 402
V D +Y
Sbjct: 352 VNDPLY 357
>gi|227509368|ref|ZP_03939417.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227191080|gb|EEI71147.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 297
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQID 270
D +I+ E +V++K AG + D++ + R + ++D
Sbjct: 76 DLPIQIVFEDEHFLVVNKSAGVASVPAHNRANDSLVNRVKGYYQRNHYANQKIHIVTRLD 135
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G V+ A+ S+ +++++ ++KK YLA+ Y+ A LV
Sbjct: 136 KDTSGLVIFAKHHFAHSVLDKQLKDHQIKKTYLAIVEGVFSTTHFEIYLPIKRAAGSLVK 195
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE--CKIKLLTGRTHQVRAQ 388
++V +P GK E W + K+++ TGRTHQ+R
Sbjct: 196 -------------RQVGFP----GKMSVTE--AWTKQRLRQHTLLKLQIHTGRTHQIRVH 236
Query: 389 LAACGAPIVGDSMYMP 404
+ A G P+VGD +Y P
Sbjct: 237 MTAIGHPLVGDWLYNP 252
>gi|385850466|ref|YP_005896981.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M04-240196]
gi|385854378|ref|YP_005900891.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240355]
gi|325203319|gb|ADY98772.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240355]
gi|325205289|gb|ADZ00742.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M04-240196]
Length = 330
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N +L
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVKLP 195
Query: 330 SEGWYLCQLEVMECKKVPWPDA-TVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M A TV +A + G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSADGQSAHTVFRALNRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|304386318|ref|ZP_07368651.1| ribosomal large subunit pseudouridine synthase [Pediococcus
acidilactici DSM 20284]
gi|304327675|gb|EFL94902.1| ribosomal large subunit pseudouridine synthase [Pediococcus
acidilactici DSM 20284]
Length = 304
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 220 IIAVTESHVVLDKPAGTS--------VGGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
++ + +V++KPAG +G + ++ A S A + H++D
Sbjct: 87 VLFENDDLLVVNKPAGIKTHANQPHELGSMINFLQAYFAKKDSNAYNV-------HRLDQ 139
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPI 322
T G +++A+ I R+I +K +++ YL + T LP+G+ H R
Sbjct: 140 WTSGALLVAKNPVVVPILSRQISQKLIQRTYLCMVEGHLKSRSGTITLPIGLDPHDQR-- 197
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
+++ P A + + R +++L TGRT
Sbjct: 198 --------------------KRQINGPGAQPATTHYQVVREFVERSL---LRVQLATGRT 234
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R LAA G PIVGD +Y
Sbjct: 235 HQIRVHLAALGHPIVGDPLY 254
>gi|429213049|ref|ZP_19204214.1| putative pseudouridylate synthase [Pseudomonas sp. M1]
gi|428157531|gb|EKX04079.1| putative pseudouridylate synthase [Pseudomonas sp. M1]
Length = 299
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 22/191 (11%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--LTTPLRTTHQIDN 271
I + RI+ V E VV DKP V + +E++ +R L L PL H+ID
Sbjct: 83 IPFEERILHVDEHLVVADKPHFLPVTPSGQYVEQTLLARLARRLDNPLLVPL---HRIDR 139
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G V+ + + + RE+++ K Y A+ PLP H R RLV
Sbjct: 140 PTAGLVLFSANPASRAAYQALFRERRMHKRYEAIAP-PLPQLDFPHVRR-----SRLVDG 193
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
++ E + + IE R++ + + ++G+ HQ+R +AA
Sbjct: 194 EPFILMREA---------EGAINSETRIEVLE--RREHWWRYALYPVSGKRHQLRVHMAA 242
Query: 392 CGAPIVGDSMY 402
GA + D +Y
Sbjct: 243 LGAALRNDPLY 253
>gi|50555826|ref|XP_505321.1| YALI0F12199p [Yarrowia lipolytica]
gi|49651191|emb|CAG78128.1| YALI0F12199p [Yarrowia lipolytica CLIB122]
Length = 605
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
++ VD +V G ++ H P D I+ + VV+DKP+G V
Sbjct: 140 KVAQVDSVVRNGDAIQHRSHKHEPPVT---DQEIDIVHEDDDLVVIDKPSGMPVHPAGRY 196
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ GL + +++D T G + +A+ + F ++R+++V+K Y+A
Sbjct: 197 RFNTAVNILKHVNGLH--VHPCNRLDRLTSGLMFMAKNPKSADKFGAQLRDRQVQKQYVA 254
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV-MECKKVPWPDATVGKAYSIEDCG 363
P G ++ + P++ G+ + +V + + AT +A ++
Sbjct: 255 RVVGKFPDGEISVDENLCTLDPKI---GFNIVTTKVDRDHHRALMDRATEREAKTV---- 307
Query: 364 WPSRDYAYECKIKL---LTGRTHQVRAQLAACGAPIVGDSMY 402
+ Y E I L TGRTHQ+R L G PI D +Y
Sbjct: 308 FKRISYDGETSIVLCKPYTGRTHQIRVHLQFLGHPIANDPLY 349
>gi|357018531|ref|ZP_09080801.1| pseudouridine synthase [Mycobacterium thermoresistibile ATCC 19527]
gi|356481685|gb|EHI14783.1| pseudouridine synthase [Mycobacterium thermoresistibile ATCC 19527]
Length = 289
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 40/206 (19%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P+ P +DI I+ E+ VV+DKP + ++ ++ R L L L
Sbjct: 72 PEEVPVPFDIP----ILYRDENIVVVDKPHFLATTPRGRHVAQTALVRLRRQLDLPE-LS 126
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G ++ +E + R ++ V+K+YLA AP +RP
Sbjct: 127 PAHRLDRLTAGVLLFTTRREVRGRYQRLFADEAVRKIYLA--GAP---------VRPDLE 175
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC--------KIK 376
PR+V +++ + G ++E+ G P+ + E ++
Sbjct: 176 FPRVVRS-------RIIKRR---------GSLQAVEEPGEPNAETLVELLDASAGRYRLT 219
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R +A G PIV D +Y
Sbjct: 220 PRTGRTHQLRVHMAVLGVPIVNDPLY 245
>gi|313667509|ref|YP_004047793.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica 020-06]
gi|313004971|emb|CBN86399.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica 020-06]
Length = 330
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +DI + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 REFDIVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N RL
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVRLP 195
Query: 330 SEGWYLCQLEVM----ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
+ Q E M E + V +S + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSEDGQAAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|228475873|ref|ZP_04060583.1| ribosomal large subunit pseudouridine synthase, RluD family
[Staphylococcus hominis SK119]
gi|314936097|ref|ZP_07843444.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus hominis subsp. hominis C80]
gi|418619740|ref|ZP_13182553.1| pseudouridine synthase, RluA family [Staphylococcus hominis VCU122]
gi|228270028|gb|EEK11498.1| ribosomal large subunit pseudouridine synthase, RluD family
[Staphylococcus hominis SK119]
gi|313654716|gb|EFS18461.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus hominis subsp. hominis C80]
gi|374823947|gb|EHR87937.1| pseudouridine synthase, RluA family [Staphylococcus hominis VCU122]
Length = 274
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E ++ ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENQITRIYRANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + + + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHPNKRRISNTGQRAITHILTSKMIKEGIC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y A + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDATLRQLE 250
>gi|118362444|ref|XP_001014449.1| pseudouridine synthase, RluD subfamily protein [Tetrahymena
thermophila]
gi|89296216|gb|EAR94204.1| pseudouridine synthase, RluD subfamily protein [Tetrahymena
thermophila SB210]
Length = 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++I + +VL KP SV + S +G L H++D T G ++
Sbjct: 102 KVIFEDDKLLVLSKPPYISVHASGGFHFNSLVGLLKFEMGYNIELYVLHRLDKLTSGVLI 161
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+A+ ++ FH E +KK YLA + Y +PI + V G Y L
Sbjct: 162 MAKDRDLTKKFHESETEL-IKKTYLARVHGNFNHQYLE-YEKPIYCIYKKV--GTYAV-L 216
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGW---PSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ + +++ A K +I W S EC+ +TGRTHQ+R L++ G P
Sbjct: 217 DTTDEEEIKSKGAKQSK--TIFKKIWYDEKSDSSLLECQP--ITGRTHQIRVHLSSLGFP 272
Query: 396 IVGDSMY 402
I+ D+ Y
Sbjct: 273 IINDTQY 279
>gi|423301471|ref|ZP_17279495.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
gi|408472072|gb|EKJ90601.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
Length = 223
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMR 320
L TH++D G VV A+T + + + R +VKK Y A+ AP P G + H++
Sbjct: 51 LGVTHRLDRPVSGLVVFAKTSKALTRLNEMFRTSEVKKTYWAVVKNAPKEPEGELVHFL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV + KK +G+ S +Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDKEVPKSKKAILDYRLIGR----------SENY-YLLEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
R HQ+R QLA G PI GD Y SP NP G
Sbjct: 155 RHHQIRCQLAKMGCPIKGDLKY--------GSPRSNPDG 185
>gi|221067278|ref|ZP_03543383.1| pseudouridine synthase [Comamonas testosteroni KF-1]
gi|220712301|gb|EED67669.1| pseudouridine synthase [Comamonas testosteroni KF-1]
Length = 220
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 22/195 (11%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E +VLDKP+G ++ C + RAL H++D T G V++AR
Sbjct: 11 EHLLVLDKPSGLLCVPGRGPDKQDCLSL--RALQHFGDALVVHRLDQATSGLVIMARNPV 68
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM--- 341
+ E++V K Y+A+ L G T ++GW L L +
Sbjct: 69 VQRQLGQAFAERQVDKRYIAVVAGDLQAGPETAD-----------AQGWQLIDLPIAADW 117
Query: 342 ECKKVPWPDATVGKA-----YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
E + + + GK+ ++E G + LTGRTHQ+R +AA G I
Sbjct: 118 ERRPLRVINHENGKSSQTLWQALEQTGQQEM-TCTRVLLSPLTGRTHQLRLHMAASGHAI 176
Query: 397 VGDSMYMPAAIAQLS 411
+GD++Y +A S
Sbjct: 177 LGDALYADETVASAS 191
>gi|452991401|emb|CCQ97264.1| Pseudouridine synthase, RluA family [Clostridium ultunense Esp]
Length = 240
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYM- 319
L H++D G ++ A+T + S IR + +K YLA+ L P G + H++
Sbjct: 53 LGLVHRLDRPVGGSMIFAKTSKAASRLSESIRTHQFQKEYLAVIRGSLVQPKGRLIHHLL 112
Query: 320 -----RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECK 374
+++ P V + + ++E Y + D RD +
Sbjct: 113 KDERTNTVSVVPSTVKQ----AKEAILE--------------YEVLD----QRDGFSLLR 150
Query: 375 IKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
+ L+TGR HQ+R Q+AA G P+ GD Y A+++ PG
Sbjct: 151 VHLITGRPHQIRVQMAAMGTPLYGDQKYG----AKVNKPG 186
>gi|410029742|ref|ZP_11279572.1| 23S RNA-specific pseudouridylate synthase [Marinilabilia sp. AK2]
Length = 236
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
ID+ I+ E ++V++KP S T D+ E+ A T + H++D T
Sbjct: 4 IDFKDLILFENEDYLVINKPPYLS---TLDDRHEA-QNILELAREYTPDAQVCHRLDKET 59
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
GC+V+A+ QE + ++KV K+Y A+ H + + LV
Sbjct: 60 SGCLVIAKHQEAYRNIAIQFEDRKVIKIYHAVVEG-------IHEYKDV-----LVDRNI 107
Query: 334 YLCQLEVMECKKVPWPDATVGK------AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ + + K P T+ +YS+ +C K +TGR HQ+R
Sbjct: 108 HATNKGIAKITKEGKPAQTIFNTLRTYYSYSLVEC-------------KPITGRLHQIRV 154
Query: 388 QLAACGAPIVGDSMY 402
LA +PI GD MY
Sbjct: 155 HLAHLKSPICGDEMY 169
>gi|419797945|ref|ZP_14323395.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
gi|385696794|gb|EIG27262.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
Length = 332
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 6/183 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAGT+V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGTAVHGGS-GVSFGVIEQIRRARPDARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H IR KK+YLAL LP H P + ++G + +
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLPNDSF-HVKLP--LFKYTGAQGEKMVR-- 210
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + V +S + + + L TGRTHQ+R L + PI GD
Sbjct: 211 VSEDGQSAHTIFRVLNRFSDDLLHQVGLSHLTLVQATLKTGRTHQIRVHLQSQQCPIAGD 270
Query: 400 SMY 402
Y
Sbjct: 271 ERY 273
>gi|222151816|ref|YP_002560976.1| ribosomal large subunit pseudouridine synthase [Macrococcus
caseolyticus JCSC5402]
gi|222120945|dbj|BAH18280.1| ribosomal large subunit pseudouridine synthase homolog [Macrococcus
caseolyticus JCSC5402]
Length = 273
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E+ +K+ Y A + LP+ T M PI
Sbjct: 122 HRLDQETVGLLLVAKNPFIKKILDRMLEERLIKRTYRAKVKSHLPLKHQTIDM-PIG--- 177
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ ++ + V + KA +RD + +++L TGRTHQ+R
Sbjct: 178 ---KDKFHPNKRRVSQTGDRAVTHIVSSKA---------NRDGTADVELQLETGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL+
Sbjct: 226 VHLAEIGHPVIGDPLYSDSHLRQLA 250
>gi|387773752|ref|ZP_10129039.1| rRNA pseudouridylate synthase C [Haemophilus parahaemolyticus
HK385]
gi|386903798|gb|EIJ68601.1| rRNA pseudouridylate synthase C [Haemophilus parahaemolyticus
HK385]
Length = 320
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 25/207 (12%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
+ S+I+ E +V++KP+G +V G + I E+ +A L H+ID
Sbjct: 93 ELESQILYEDEVMLVINKPSGIAVHGGSGLSFGIIEALRALRPQA----RFLELVHRIDR 148
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G +++A+ + H ++REK V+K YLAL G +++ + AP L +E
Sbjct: 149 DTSGILLVAKKRSALRNLHEQLREKVVQKDYLALVR-----GQWQSHVKVVK-APLLKNE 202
Query: 332 GWYLCQLEVM-ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
L E M + + P T + IE+ +PS A K +TGRTHQ+R
Sbjct: 203 ---LASGERMVKVSEAGKPSET---RFVIEER-YPS---ATLVKASPVTGRTHQIRVHTQ 252
Query: 391 ACGAPIVGDSMYMPAAIAQ-LSSPGLN 416
G PI D Y Q + GLN
Sbjct: 253 HAGHPIACDDKYGDRDFDQKMQQIGLN 279
>gi|398805473|ref|ZP_10564446.1| pseudouridine synthase, RluA family [Polaromonas sp. CF318]
gi|398091509|gb|EJL81950.1| pseudouridine synthase, RluA family [Polaromonas sp. CF318]
Length = 344
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 94/235 (40%), Gaps = 30/235 (12%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSV-------GGTTDN 244
V+AG L + + P + + + + I ++++ VL+KPAG V GT N
Sbjct: 89 VKAGDALLIELRPTPQSQAFKPEAMALDIVFEDAYLMVLNKPAGLVVHPAPGNWSGTLLN 148
Query: 245 ---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+ A F RA H++D T G +V+AR + I + V +
Sbjct: 149 GLLAHDPQAVFLPRA-------GIVHRLDKDTSGLMVVARQRTVMDQLVGLIAARDVSRE 201
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIED 361
Y+AL PI PR ++ V++ +K GK S
Sbjct: 202 YVALAHGAWQGAKTRQVDAPIGRDPR------NRLRMAVVDLEK------NAGKTASTVV 249
Query: 362 CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
D K KL TGRTHQ+R +A G P+V D +Y A A L GL+
Sbjct: 250 SLLHGTDKHCLVKCKLHTGRTHQIRVHMALLGHPLVSDELYGGAPAAGLGRQGLH 304
>gi|260220730|emb|CBA28584.1| Ribosomal large subunit pseudouridine synthase C [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 361
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTP 262
K FP ++ D + +DKPAG +V G + + E +A T
Sbjct: 107 KDFPVLFEDD----------HFLAVDKPAGVAVHGGSGVSFGVIEQLRMARPKA----TF 152
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H++D T G +++A+ + + RE++ K YLAL P +
Sbjct: 153 LELVHRLDRETSGILLVAKKRSALKNLQDQFRERETGKTYLALVAGQWPA---NKKVLDK 209
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSI----EDCGWPSRDYAYECKIKLL 378
++ L+++G ++ V + P ++ K +S+ P + ++ +
Sbjct: 210 SLQKYLLADGERRVRV-VAKDHPDAMPSLSLVKVHSVTPAARTAQTPQQKVYSLLEVTIK 268
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R LA+ G IVGD Y
Sbjct: 269 TGRTHQIRVHLASEGMGIVGDDKY 292
>gi|269958889|ref|YP_003328678.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
centrale str. Israel]
gi|269848720|gb|ACZ49364.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
centrale str. Israel]
Length = 299
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV-LDKPAGTSV-GGTTD 243
I H D+IV +R R +D S I + +V+ ++KPAG SV GG+
Sbjct: 62 IKHADRIVMREKEIR------RLQHVPLLDLISNNILYEDQNVIAINKPAGVSVQGGSKV 115
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
+ R G R H++D T G +VLAR + R+ RE++V+K Y+
Sbjct: 116 GVSIGDLLDKIRPGGCC---RIVHRLDKDTSGVLVLARDLDVARCLAREFRERRVQKEYI 172
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCG 363
A+T +P PI +Y Q E ++ DA +S+
Sbjct: 173 AITKG-VPHSASGEVNTPI----------FYKVQSATGE--RMLEKDAKT--FFSVTRVL 217
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++A ++ +TGR HQ+R ++ G PIVGDS Y
Sbjct: 218 G---NFAV-VLLRPVTGRKHQLRIHMSQIGCPIVGDSKY 252
>gi|384109990|ref|ZP_10010838.1| Pseudouridylate synthase, 23S RNA-specific [Treponema sp. JC4]
gi|383868449|gb|EID84100.1| Pseudouridylate synthase, 23S RNA-specific [Treponema sp. JC4]
Length = 216
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSI 288
V++KPAG SV G ++ S AL + H++D T G +++A++ S
Sbjct: 15 VINKPAGLSVQGG-QGVKHSLDN--DFALQTGQKVYLVHRLDKDTSGLMIVAKSPFAASK 71
Query: 289 FHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
+ + I K VKK Y+A+ + G++T +L+ G E V
Sbjct: 72 WTKLISSKAVKKEYIAICAGKMKDKKGVITE---------KLIQHGS--------EKSAV 114
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ K ++ E G+ + ++ ++KL TGR HQ+R LA G PI GD +
Sbjct: 115 TYFTVEEEKNFTTEIEGYENISLSF-LRLKLETGRMHQIRIHLAKNGCPIAGDDQH 169
>gi|326799397|ref|YP_004317216.1| pseudouridine synthase [Sphingobacterium sp. 21]
gi|326550161|gb|ADZ78546.1| pseudouridine synthase [Sphingobacterium sp. 21]
Length = 232
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 19/190 (10%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCT 273
+ I+ E V ++KP+G V + +EE + + S R H++D
Sbjct: 8 DQHILYEDEHLVAINKPSGYLVEASAKEKRALEEMLSAYLSEKHHKDIQTRAVHRLDRRV 67
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G ++ A+T + + V+K Y A+ P P+ + +LV
Sbjct: 68 SGLLLFAKTTVALEGMIALFKARLVEKTYWAIVANP-----------PLVPSDKLVHWLT 116
Query: 334 YLCQLEVMECKKVPWPDATVGK-AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ + P P + + AY + + D + ++ TGRTHQ+RAQLAA
Sbjct: 117 RDKEQNISYTHNEPQPHSVKAELAYRLLEKA----DDFFLIEVYPFTGRTHQIRAQLAAI 172
Query: 393 GAPIVGDSMY 402
G PIVGD Y
Sbjct: 173 GCPIVGDYKY 182
>gi|312873566|ref|ZP_07733613.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|311090819|gb|EFQ49216.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
Length = 292
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V+DKPAG TD C ++ LG + + H++D T G
Sbjct: 93 IIYENDDVLVIDKPAGQKTHPNLYETDTALNDCTSY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A A LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIDATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK+ G + K++L TGRTHQ+R
Sbjct: 202 RMVRTDGLKAITHYQVVKKI-------GSKILV--------------KLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|406672928|ref|ZP_11080153.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
gi|423316211|ref|ZP_17294116.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405584107|gb|EKB58029.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405587472|gb|EKB61200.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
Length = 352
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 20/205 (9%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLT 260
HP R D I+ + +V+DKPAG V G D + F + GL
Sbjct: 93 HPPRENEIIPQDIPLTIVYEDDDLIVVDKPAGMVVHPGFGNWDGTLVNALAFHFQKNGLK 152
Query: 261 TPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
T L H+ID T G +V+A+ + S ++ ++K K++Y A
Sbjct: 153 TDLDRVGLVHRIDKDTSGLLVVAKNEYALSHLAKQFYDRKTKRIYWAFVWG--------- 203
Query: 318 YMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 377
NIA + ++ + + +PD + GK Y + KL
Sbjct: 204 -----NIADDAGTITGHIGRHLKNRMQMAVFPDGSHGKHAVTHFRVLERFKYMTWVECKL 258
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+RA G + D Y
Sbjct: 259 ETGRTHQIRAHFKHIGHTLFNDERY 283
>gi|254523953|ref|ZP_05136008.1| pseudouridine synthase [Stenotrophomonas sp. SKA14]
gi|219721544|gb|EED40069.1| pseudouridine synthase [Stenotrophomonas sp. SKA14]
Length = 295
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 22/191 (11%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLT--TPLRTTHQIDN 271
I + I+ + +V DKP V ++ E T +R + T L H++D
Sbjct: 77 IPFAETIVHLDAHLLVADKPHFLPVTPAGRHVRE---TLLARLIARTGNPELVPLHRLDR 133
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G V+ + + R RE++++K+Y AL A M P+ RLV
Sbjct: 134 LTAGLVLFSTQPATRDAYQRLFRERRIEKIYEALAPA------MPGAAFPLQRHSRLVPG 187
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ EV P + IE G + +++ TGR HQ+R +AA
Sbjct: 188 EPFFRMAEV------PGEPNARSRIELIEAEG-----PIWRFRLRPETGRKHQLRVHMAA 236
Query: 392 CGAPIVGDSMY 402
GAPI GD +Y
Sbjct: 237 LGAPIEGDDLY 247
>gi|121604767|ref|YP_982096.1| RluA family pseudouridine synthase [Polaromonas naphthalenivorans
CJ2]
gi|120593736|gb|ABM37175.1| ribosomal large subunit pseudouridine synthase D [Polaromonas
naphthalenivorans CJ2]
Length = 344
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 30/235 (12%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH-VVLDKPAGTSV-------GGTTDN 244
V+AG L + + P + + + + I + H +V++KPAG V GT N
Sbjct: 89 VKAGDELTIELRPTPQSQAFKPEEMALDIVYEDRHLIVVNKPAGLVVHPAPGNWSGTLLN 148
Query: 245 ---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+ A+F RA H++D T G +V+AR ++ I + V +
Sbjct: 149 GLLAHDPQASFMPRA-------GIVHRLDKDTSGLMVVARQRQTMDQLVSMIAARTVSRE 201
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIED 361
Y+AL PI PR ++ V++ +K GKA S
Sbjct: 202 YIALAHGTWEGAKTRQVEAPIGRDPR------NRLRMAVVDLEK------NSGKAASTVI 249
Query: 362 CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
+ + K KL TGRTHQ+R +A G P+V D +Y A L L+
Sbjct: 250 SLLDNAEKHCLVKCKLHTGRTHQIRVHMAFLGHPLVSDEVYGGAVAGSLQRQALH 304
>gi|223039842|ref|ZP_03610126.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Campylobacter rectus RM3267]
gi|222878851|gb|EEF13948.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Campylobacter rectus RM3267]
Length = 354
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR------T 265
++ ++ II E +VL+KPA V E + + L + L
Sbjct: 90 FEAEFEVPIIYEDEDLLVLNKPANLVVHPAPSVKEPTLVDWLGAKGFLLSNLSGQSRAGI 149
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +V+A+ + ++ +K + ++YLALT PL N A
Sbjct: 150 VHRLDKGTSGAIVVAKNNAAHAALSSQLSDKSMGRIYLALTDLPLKQNCTVWRAIGRNPA 209
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKA------YSIEDCGWPSRDYAYEC-KIKLL 378
RL KK PD K+ +S D S++ KL
Sbjct: 210 NRL---------------KKAIVPDGRAAKSAFANLLFSEFDGPAQSKNAGVNLIAAKLF 254
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R LA+ I+GD++Y
Sbjct: 255 TGRTHQIRVHLASLNRHILGDALY 278
>gi|385675189|ref|ZP_10049117.1| pseudouridine synthase [Amycolatopsis sp. ATCC 39116]
Length = 319
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E VV DKP + ++ E+ R LGL L H++D T G ++
Sbjct: 92 VVHRDEHLVVADKPHFLATIPRGQHVLETALVRLRRDLGLPE-LSPAHRLDRATAGLLLF 150
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
+EY + R+++V K Y A+ H P+ + R+V + L E
Sbjct: 151 VTRREYRGRYQTLFRDRRVSKEYEAVARHD------PHLDLPVTVRSRIVKDRGSLTARE 204
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V D V +E D ++ TGRTHQ+R + G PI+GD
Sbjct: 205 V---------DGPVNAETRVELL--EHADGRGRYRLVPATGRTHQLRVHMNHLGIPILGD 253
Query: 400 SMY 402
Y
Sbjct: 254 RFY 256
>gi|365758509|gb|EHN00347.1| Rib2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 588
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 32/239 (13%)
Query: 188 HVDQIVEAGTYL--RVHVH-PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+++ I+ G + +VH H P + DI + + I +V+DKP+ V T
Sbjct: 133 NLETIIHDGDLITHKVHRHEPPVTSKPIDIVFEDKDI------LVIDKPSSIPVHPTGRY 186
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ R LG + + +++D T G + LA+T + +++ ++V K Y+A
Sbjct: 187 RFNTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTSQGADKMGDQMKAREVTKEYVA 244
Query: 305 LTTAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQL--EVMECKKVPWPDATVGKAYSIED 361
P+GI+ RP+ +I P++ +C++ E + K + + SI
Sbjct: 245 RVKGEFPIGIV-EVERPVRSINPKVALNA--VCEMGDENAKHAKTVFQRVSYDGQTSIVK 301
Query: 362 CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI--AQLSSPGLNPF 418
C K LTGRTHQ+R L G PI D +Y I +L GL +
Sbjct: 302 C-------------KPLTGRTHQIRVHLQYLGFPIANDPIYSNLDIWGPELGRGGLENY 347
>gi|284030831|ref|YP_003380762.1| pseudouridine synthase, RluA family [Kribbella flavida DSM 17836]
gi|283810124|gb|ADB31963.1| pseudouridine synthase, RluA family [Kribbella flavida DSM 17836]
Length = 309
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 39/200 (19%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV------GGTTDNIEESCATFASRALGLTTPLRTTHQID 270
N RI+ + VV+DKP G + G T + A F+ G H++D
Sbjct: 81 NLRIVHDDDEIVVVDKPVGVAAHPSPGWTGPTVIGHLAGAGFSISTSGAAERKGIVHRLD 140
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPR-- 327
T G +V+A+T+ ++ R +E+ VKK+Y AL P P PI+ P
Sbjct: 141 VGTSGLMVVAKTEYSYTVLKRAFKERTVKKIYHALVQGHPDP--FTGTVDAPIDRHPNHD 198
Query: 328 ----LVSEGW-YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
+V+ G + E +E + YA +I L TGRT
Sbjct: 199 YKFGVVAGGKPSITHYETLEAFR-----------------------YATLLEITLETGRT 235
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R ++A G P GD Y
Sbjct: 236 HQIRVHMSAIGHPCCGDLTY 255
>gi|304389009|ref|ZP_07371056.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis ATCC 13091]
gi|385342762|ref|YP_005896633.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240149]
gi|385856345|ref|YP_005902857.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NZ-05/33]
gi|416167879|ref|ZP_11607759.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis OX99.30304]
gi|416181350|ref|ZP_11611596.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M13399]
gi|416186231|ref|ZP_11613592.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M0579]
gi|304337143|gb|EFM03330.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis ATCC 13091]
gi|325131027|gb|EGC53753.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis OX99.30304]
gi|325135123|gb|EGC57750.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M13399]
gi|325137030|gb|EGC59626.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M0579]
gi|325202968|gb|ADY98422.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240149]
gi|325207234|gb|ADZ02686.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NZ-05/33]
Length = 330
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N +L
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVKLP 195
Query: 330 SEGWYLCQLEVMECKKVPWPDA-TVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M A TV + S G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|258542797|ref|YP_003188230.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|384042718|ref|YP_005481462.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
gi|384051235|ref|YP_005478298.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|384054343|ref|YP_005487437.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|384057577|ref|YP_005490244.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|384060218|ref|YP_005499346.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|384063510|ref|YP_005484152.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|384119520|ref|YP_005502144.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633875|dbj|BAH99850.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|256636934|dbj|BAI02903.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|256639987|dbj|BAI05949.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|256643043|dbj|BAI08998.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|256646098|dbj|BAI12046.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|256649151|dbj|BAI15092.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|256652138|dbj|BAI18072.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655195|dbj|BAI21122.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
Length = 328
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 219 RIIAVTESHVV-LDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+++ + HV+ L+KPAG +V GG R P R H+ID T G
Sbjct: 90 KMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDGLREEDDPRP-RLVHRIDKDTSGL 148
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEGWY 334
++LART + R + VKK+Y A+ P P+ G + + + P ++
Sbjct: 149 LLLARTPGVAAKLAASFRGRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGSITVAAD 208
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ + V Y + D +R +++ ++ LTGRTHQ+R + G
Sbjct: 209 RKDADAQSARSV----------YEVLDSA--ARKFSW-LELSPLTGRTHQLRVHCESLGT 255
Query: 395 PIVGDSMYMPAA 406
PI+GD Y AA
Sbjct: 256 PILGDPKYGGAA 267
>gi|224476909|ref|YP_002634515.1| hypothetical protein Sca_1425 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421516|emb|CAL28330.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 275
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ + R + + ++ ++Y A + LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKLLDRMLEDNQISRIYKARVKSQLP-------LKPQTIDK 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + + +C E IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNRRRVSPTGQHAITHILDSRMIKENEC---------ELDIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LAA G P++GD +Y + + QL
Sbjct: 226 VHLAAIGHPVLGDPLYGDSKLRQLQ 250
>gi|307154171|ref|YP_003889555.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7822]
gi|306984399|gb|ADN16280.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7822]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 25/225 (11%)
Query: 192 IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT 251
+++ G L H P P ++ + + + +V+ KP+ V +E + +
Sbjct: 57 LLQPGQKLTYHRPPWEEP---EVPLSFEVFYEDDEVLVVAKPSLLPVLPGGGFLEHTLLS 113
Query: 252 FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ TP+ H++ T G V+LAR+ + ++R +V K+Y AL +
Sbjct: 114 LLQQQYPQRTPI-PVHRLGRGTSGLVLLARSPHARANLTEQMRSHQVGKIYRALVGS--- 169
Query: 312 VGIMTHYM--RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDY 369
I H++ PI P V + + M KAYS +C R+
Sbjct: 170 GNIPDHFVITHPIGKIPHPVLGYVFGATADGM-------------KAYS--ECHVLKRNP 214
Query: 370 AYE-CKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSP 413
++K+LTGR HQ+R LA G P++GD +Y + ++ P
Sbjct: 215 TTTLVEVKILTGRPHQIRIHLAVAGYPLIGDPLYQIGGVPRIPEP 259
>gi|410462720|ref|ZP_11316282.1| dephospho-CoA kinase [Desulfovibrio magneticus str. Maddingley
MBC34]
gi|409984172|gb|EKO40499.1| dephospho-CoA kinase [Desulfovibrio magneticus str. Maddingley
MBC34]
Length = 570
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 35/201 (17%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--------T 266
D + +++ + +VL+KPAG ++ E T +R L +R
Sbjct: 106 DGDLKLLYLDGDVLVLNKPAGLTIHPAPSQPE---GTLVNRLLHHFPDMRAMAGDRPGIV 162
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A T+ E++V K YLAL + RP +
Sbjct: 163 HRLDKDTSGLLLVALTESARLALAADFAERRVSKTYLAL--------VHGRPERPDGV-- 212
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGK----AYSIEDCGWPSRD-YAYECKIKLLTGR 381
+L + K P A V K A S W + D A ++ + TGR
Sbjct: 213 ---------IELPIGRDPKHPTKMAVVAKGGREARSSWKLAWTAPDGSASLLEVTIATGR 263
Query: 382 THQVRAQLAACGAPIVGDSMY 402
THQ+R +AA G PIVGD++Y
Sbjct: 264 THQIRVHMAAMGHPIVGDAVY 284
>gi|167041415|gb|ABZ06167.1| putative RNA pseudouridylate synthase [uncultured marine
microorganism HF4000_006O13]
Length = 320
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
N+ +I +S ++++KP+G +V G + + E +F + L H++D T
Sbjct: 91 NNIVIFENDSFLLVNKPSGLAVHGGSGIHLGLIELLRSFREKR---NEHLELVHRLDKDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
GC+++++ + H RE KVKK YL L VG T + I+ ++++
Sbjct: 148 SGCLLVSKKKSKLRKLHEYFREGKVKKTYLGLM-----VGKFTQTVYEIDQPLKIIT--- 199
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E ++ PD + KA + ++ A KI+ +TG+THQ+RA
Sbjct: 200 ------TPENGRLAVPDDSGKKAKTKFFLMEKYKNSAL-FKIEPITGKTHQIRAHAKYMK 252
Query: 394 APIVGDSMY 402
P+ D+ Y
Sbjct: 253 TPLAADNRY 261
>gi|389722457|ref|ZP_10189096.1| pseudouridine synthase [Rhodanobacter sp. 115]
gi|388441893|gb|EIL98129.1| pseudouridine synthase [Rhodanobacter sp. 115]
Length = 280
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 19/216 (8%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
I + I+ + + +V DKP V +EE+ + G L H+ID T
Sbjct: 58 IPFAETILHLDQHLLVADKPHFLPVTPAGRFVEETLLARLVKRTG-NADLVPLHRIDRLT 116
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G V+ + + + + RE+ ++K Y AL PLP + P+ R+V+
Sbjct: 117 AGLVLFSTRPDSRAAYQALFRERTIEKRYEALAP-PLPEPVF-----PLVRRSRIVAGEP 170
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+ EV D IE + D+ Y TGR HQ+R Q+A G
Sbjct: 171 FFRMHEV---------DGPPNSETRIEVLVRGAGDWRYALYPH--TGRKHQLRVQMAGLG 219
Query: 394 APIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDD 429
API D +Y P +A+ P + A DD
Sbjct: 220 APIRHDPLY-PVLMAEAPDDHARPLQLLAQALAFDD 254
>gi|87311611|ref|ZP_01093729.1| ribosomal large subunit pseudouridine synthase D [Blastopirellula
marina DSM 3645]
gi|87285733|gb|EAQ77649.1| ribosomal large subunit pseudouridine synthase D [Blastopirellula
marina DSM 3645]
Length = 242
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 39/220 (17%)
Query: 200 RVHVHPKRFPRCYD---IDWNSRIIAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASR 255
RV R P C D + + + ++ ++H++ + KPA + G + E S A +A
Sbjct: 3 RVESKFSRGPLCNDDHPMKYATPLVLYEDNHLLAISKPALLATMGAQEG-EPSAAQWAKD 61
Query: 256 ALGLT------TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
L T + +ID G ++ ART + S + R++ K Y AL A
Sbjct: 62 YLKRTYNKPGNVYVGIVSRIDAHVTGVLLFARTSKAASRLSEQFRDRSTVKEYAALIPAG 121
Query: 310 LPV--GIMTHYMRPINIAPRLV--SEGWY---LCQLEVMECKKVPWPDATVGKAYSIEDC 362
+ G + ++R + R+V +EG ++E++E ++ P +C
Sbjct: 122 PKIRNGELVDWIRKEDRLHRMVIAAEGTADADRAEMEILEQQRRP-------------NC 168
Query: 363 GWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++L+TGR HQ+R QLA+ GAPI+GD Y
Sbjct: 169 QM--------LHLRLITGRKHQIRLQLASRGAPILGDKKY 200
>gi|336453032|ref|YP_004607498.1| ribosomal large subunit pseudouridine synthase D [Helicobacter
bizzozeronii CIII-1]
gi|335333059|emb|CCB79786.1| ribosomal large subunit pseudouridine synthase D [Helicobacter
bizzozeronii CIII-1]
Length = 180
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G V++++++ + + ++++K YLA L
Sbjct: 3 HRLDYETSGLVLVSQSKAHENALRELFSLRRIQKTYLASVQGDL---------------- 46
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDA------TVGK--AYSIEDCGWPSRDYAYECKIKLL 378
RL + G + L ++E + T GK A +IE G+ R KI L
Sbjct: 47 RLYASGAFSVILPILEPSSIRGDLGVRSKIDTRGKFSATTIEILGYNPRTNQTHLKITPL 106
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R L+A G PIVG+ +Y
Sbjct: 107 TGRTHQIRLHLSALGFPIVGEPLY 130
>gi|344231422|gb|EGV63304.1| pseudouridine synthase [Candida tenuis ATCC 10573]
Length = 580
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II E+ + +DKP+G V T + G + +++D T G +
Sbjct: 163 KIIFENENIIAIDKPSGIPVHPTGRYRFNTITKIFQHEYGKV--VHPCNRLDRLTSGLMF 220
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
L +T + F ++I+++ V+K Y+A PV +T IAP+L L ++
Sbjct: 221 LGKTSKGADGFVQQIKDRSVRKEYIARVAGLFPVEEITVDKPLRTIAPKLT-----LNRV 275
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+ E K+ TV + S + + K LTGRTHQ+R L G PI
Sbjct: 276 DEKEGKEA----KTVFRRLS-----YDKKSNTSIVKCLPLTGRTHQIRVHLQFLGHPIAN 326
Query: 399 DSMYMPAAIAQLSSPGLNPFGKCQKEYASDD--DKEMAVIEWISQHG 443
D +Y + + G N G + + D K+ AV WI G
Sbjct: 327 DPIYSSEYVWG-PNLGKNNEGNTDEIVSKLDGTGKDRAVSTWIHPEG 372
>gi|15676125|ref|NP_273256.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis MC58]
gi|385339240|ref|YP_005893112.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis G2136]
gi|385852405|ref|YP_005898919.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis H44/76]
gi|416199950|ref|ZP_11619535.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis 961-5945]
gi|421537238|ref|ZP_15983426.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|421553948|ref|ZP_15999899.1| pseudouridine synthase [Neisseria meningitidis 98008]
gi|427826919|ref|ZP_18993964.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
H44/76]
gi|433464190|ref|ZP_20421684.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM422]
gi|433466311|ref|ZP_20423774.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
87255]
gi|433487395|ref|ZP_20444574.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M13255]
gi|433489569|ref|ZP_20446708.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM418]
gi|433504207|ref|ZP_20461152.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9506]
gi|433506250|ref|ZP_20463169.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9757]
gi|433508384|ref|ZP_20465270.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
12888]
gi|433510467|ref|ZP_20467310.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
4119]
gi|7225419|gb|AAF40655.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis MC58]
gi|316985120|gb|EFV64072.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
H44/76]
gi|325143210|gb|EGC65550.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis 961-5945]
gi|325197484|gb|ADY92940.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis G2136]
gi|325199409|gb|ADY94864.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis H44/76]
gi|402319715|gb|EJU55220.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|402333984|gb|EJU69279.1| pseudouridine synthase [Neisseria meningitidis 98008]
gi|432205099|gb|ELK61130.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
87255]
gi|432206000|gb|ELK62015.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM422]
gi|432226160|gb|ELK81893.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M13255]
gi|432230565|gb|ELK86240.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM418]
gi|432243590|gb|ELK99101.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9506]
gi|432244266|gb|ELK99761.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9757]
gi|432250035|gb|ELL05433.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
12888]
gi|432250535|gb|ELL05928.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
4119]
Length = 330
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N +L
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVKLP 195
Query: 330 SEGWYLCQLEVMECKKVPWPDA-TVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M A TV + S G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|343519555|ref|ZP_08756535.1| rRNA pseudouridylate synthase C [Haemophilus pittmaniae HK 85]
gi|343392625|gb|EGV05190.1| rRNA pseudouridylate synthase C [Haemophilus pittmaniae HK 85]
Length = 322
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 27/207 (13%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCT 273
S+II + +VL+KP+G +V GG+ N A RAL L H++D T
Sbjct: 96 LESQIIFEDDCLLVLNKPSGIAVHGGSGLNF---GVIEALRALRPEARFLELVHRLDRDT 152
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
G +++A+ + H ++R K V+K YLAL G +++ + AP L +E
Sbjct: 153 SGILLIAKKRSALRNLHEQLRVKTVQKDYLALVR-----GQWQSHVKSVQ-APLLKNE-- 204
Query: 334 YLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLA 390
L E +++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 205 -LASGERIVKVSEQGKPSET---RFSIEE------RYANATLVKASPITGRTHQIRVHCQ 254
Query: 391 ACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y + AQ+ GLN
Sbjct: 255 YAGHPIALDDKYGESEFDAQMRDFGLN 281
>gi|389604823|emb|CCA43749.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha522]
Length = 330
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N +L
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVKLP 195
Query: 330 SEGWYLCQLEVMECKKVPWPDA-TVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M A TV + S G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|86135800|ref|ZP_01054379.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
gi|85826674|gb|EAQ46870.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
Length = 348
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I + +VL+KPAG +V G + + + R H++D T G +VL
Sbjct: 94 VIYKDDDVIVLNKPAGLAVQGGSGTTKHVDGLADALRFDAEEKPRLVHRLDKDTSGVLVL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
AR + R + +K+Y AL G+ T Y+ I + E
Sbjct: 154 ARNRLAAKSLTAAFRHRNTRKIYWALVA-----GVPTPYLGEIKAGLVKAGGHGAGGEGE 208
Query: 340 VMECKKVPWPDATVG--KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
M D T G +A++ + A ++ +TGRTHQ+RA +A G PI+
Sbjct: 209 KMIAVHPNEIDRTPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAEIGHPII 268
Query: 398 GDSMY 402
GD Y
Sbjct: 269 GDGKY 273
>gi|383457934|ref|YP_005371923.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
gi|380734159|gb|AFE10161.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
Length = 308
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY--MRPINI 324
H++ T G V+ +RTQE + RE V+K Y AL+ V Y PI +
Sbjct: 135 HRLGRATSGLVLFSRTQEAAAKLSGNWREGDVEKRYRALSDG---VAAQASYDIHTPIGL 191
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
P V L + K P + +A +E RD ++++ TGR Q
Sbjct: 192 VPHPV-----LGSVHGATAKGKP----SHSRAEVLE-----RRDGQTLFEVRIHTGRPEQ 237
Query: 385 VRAQLAACGAPIVGDSMYMPAAIAQLSSPGL 415
+R LA+ G P+ GD M+ + + PGL
Sbjct: 238 IRIHLASIGHPLTGDPMFASGGLPREHEPGL 268
>gi|357384683|ref|YP_004899407.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
gi|351593320|gb|AEQ51657.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
Length = 333
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
D D+ +I + V V +KP G +V G + S P R H++D
Sbjct: 84 DADFLRDLILYEDDDVYVFNKPHGLAVQGGSGTKRHIDGMLKSLPNKKGEPPRLVHRLDR 143
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T GC+++A+T+ S F R + +K+Y A+T +G+ PR
Sbjct: 144 DTSGCLLVAKTRAAASHFGTVFRSRSARKIYWAIT-----IGVPH---------PRQGRI 189
Query: 332 GWYLCQLEVMECKK-VPWPDATVGKA-----YSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
+L + + ++ V + T G YS+ + + +A+ +K +TGRTHQ+
Sbjct: 190 SCFLARQSTQDGEQMVVVENGTEGAQHSVSYYSVTESA--ANQFAW-VTLKPVTGRTHQL 246
Query: 386 RAQLAACGAPIVGDSMY 402
R + G PI+ D Y
Sbjct: 247 RVHMMELGTPILDDPRY 263
>gi|333395129|ref|ZP_08476948.1| RluA family pseudouridine synthase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 296
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 39/211 (18%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL-------TTPLRTTHQIDN 271
+++ E +V+DKPA V +I T A+R LG + ++D
Sbjct: 79 KVVWEDEHILVVDKPA--QVASLPSHIYPK-DTMANRVLGYYQRQGYANQGIHIVTRLDR 135
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G ++ A+ ++ ++ ++++K YLA+ G +T+ I
Sbjct: 136 GTSGLMIFAKHAFAHTLLSEQLHTQQLQKTYLAVVQ-----GQLTYTHNRIT-------- 182
Query: 332 GWYLCQLEVMECKKVPWP----DATVGKAYSIEDCGWPSRDY--AYECKIKLLTGRTHQV 385
K+ PW VG ++ + W + + A K++L TGRTHQ+
Sbjct: 183 ---------FPIKRAPWSFIERTTAVGGRSALTEY-WCQQQFKNAALVKVRLHTGRTHQI 232
Query: 386 RAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
R AA G P++GD +Y I L P L+
Sbjct: 233 RVHFAAIGHPLLGDQLYQGPQIINLQRPALH 263
>gi|399031021|ref|ZP_10731200.1| 23S RNA-specific pseudouridylate synthase [Flavobacterium sp.
CF136]
gi|398070697|gb|EJL61985.1| 23S RNA-specific pseudouridylate synthase [Flavobacterium sp.
CF136]
Length = 229
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H++D T G VV ART + S + ++ +K Y A+ +P
Sbjct: 60 LGVIHRLDRPTTGIVVFARTSKALSRMNEMFSNRETQKTYWAVVKN-----------KPQ 108
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
+LV YL + E K + K S++ + +I L TGR
Sbjct: 109 ETTAKLVH---YLKRNEKNNTSKAHLKEVPDSKIASLDYTVFKELQNYVALEINLHTGRH 165
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+RAQL+A G+PI GD Y
Sbjct: 166 HQIRAQLSAIGSPIKGDLKY 185
>gi|326803815|ref|YP_004321633.1| RluA family pseudouridine synthase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651014|gb|AEA01197.1| pseudouridine synthase, RluA family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 300
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 26/215 (12%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS----RALGLTTPLRTTHQI 269
+D+ I+ +++++KPAG + + E S A F R + ++
Sbjct: 73 VDFPLDILYEDRDYLIVNKPAGYTSIPSQFKDEYSMANFVKAYFVRKNYENQVIHVVTRL 132
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G ++ A+ + S + ++ + K YLA T + +G H + AP
Sbjct: 133 DRFTSGAMIFAKHKYAHSQIDQLMQSGGINKQYLAFTHSA--IGSDQHGLIE---APIGR 187
Query: 330 SEGWYLCQLEVME-CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
EG ++E C + A Y +ED S+ Y +++L TGRTHQ+R
Sbjct: 188 KEG------SIIERCIRADGQHAKT--EYWLED----SQAGLYRYRVQLHTGRTHQIRVH 235
Query: 389 LAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQK 423
A GAP+ GD +Y + A LS L+ CQ+
Sbjct: 236 FAYLGAPLCGDDLYGGSQEAGLSGQALH----CQR 266
>gi|423351530|ref|ZP_17329181.1| hypothetical protein HMPREF9719_01476 [Turicella otitidis ATCC
51513]
gi|404386450|gb|EJZ81609.1| hypothetical protein HMPREF9719_01476 [Turicella otitidis ATCC
51513]
Length = 264
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P R Y+ D RI+ V + + P G +I ++ T R+L L
Sbjct: 38 PGDLRRIYEDD---RILVVHKPPFLATTPKGR-------HITQTVTTILRRSLS-NPQLS 86
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D TEG ++LA+ ++Y + R + V+K Y AL AP + ++ P I
Sbjct: 87 PVHRLDRLTEGLLILAKHEQYRGAYQRLFEARAVEKRYKAL--APFDPAVASNL--PTTI 142
Query: 325 APRLVSE-GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
+ R+V G +E E +AT C S E ++ TG+TH
Sbjct: 143 SNRIVKNVGTLQAHVEDGES------NATTAVHGIKPVCAQHSGQEVGEYDLRPATGKTH 196
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R +A G I D +Y
Sbjct: 197 QLRLHMAQMGIAICNDPLY 215
>gi|374594665|ref|ZP_09667669.1| ribosomal large subunit pseudouridine synthase D [Gillisia limnaea
DSM 15749]
gi|373869304|gb|EHQ01302.1| ribosomal large subunit pseudouridine synthase D [Gillisia limnaea
DSM 15749]
Length = 232
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL--TTAPLPVGIMTHYMR 320
L H++D T G V+ ++T + ++ ++K+ KK Y A+ P G + H+++
Sbjct: 63 LGVVHRLDRPTSGIVLFSKTSKALPRLNKLFKDKEAKKTYWAVVKNAPPQAEGTLVHFLK 122
Query: 321 PINIAPRLVSEGWYLCQL-EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R + + + EV E KK + K D Y +I L T
Sbjct: 123 ------RNPKQNKSIAHIKEVPESKKAILEYRILKKL-----------DNYYLLEIDLQT 165
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GR HQ+R+QL++ G+PI GD Y
Sbjct: 166 GRHHQIRSQLSSIGSPIKGDLKY 188
>gi|296120899|ref|YP_003628677.1| pseudouridine synthase [Planctomyces limnophilus DSM 3776]
gi|296013239|gb|ADG66478.1| pseudouridine synthase [Planctomyces limnophilus DSM 3776]
Length = 269
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYM--RPI 322
H++D G ++ AR + + R+++VKK Y A+ P G +T+Y+ P
Sbjct: 74 HRLDRPVSGVMLFARNSKAAARLAEVFRDRRVKKTYTAVVEGMPPQTTGRLTNYLLKDPQ 133
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
++V+EG + +++ + + TV +E I+L TGR
Sbjct: 134 AAHSQIVAEGTPGSKSAILDYRLL----GTVAGRSLLE--------------IELQTGRM 175
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R Q+AA G P+VGD Y
Sbjct: 176 HQIRVQMAAMGCPVVGDQEY 195
>gi|406877525|gb|EKD26724.1| hypothetical protein ACD_79C01047G0006 [uncultured bacterium]
Length = 228
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 220 IIAVTESHV-VLDKPAGTSV--GGTTDNIEESCATFASRALGLTTP--LRTTHQIDNCTE 274
+I ++H+ +L+KP G +V + +N+ + F + P L H++D
Sbjct: 7 LIIYEDNHLLILNKPCGIAVQNDSSKENLYDIVKIFLMKKYNKNNPAWLGIVHRLDQSVS 66
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL-PVGIMTHYMRPINIAPRLVSEGW 333
G ++ A+ + S + K ++K Y+A+ + + ++ +++ + ++VS
Sbjct: 67 GVLIFAKNSKSASRLCNQFNSKSIEKNYIAIVSGEVNDSKLLENFLVKSDRMSKIVS--- 123
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+ + K+ + K +SI KI L+TG HQ+R QLA
Sbjct: 124 --AKTNNSKSAKLEYSSIHGSKKFSI-------------LKINLITGYYHQIRCQLAGIR 168
Query: 394 APIVGDSMY 402
P++GD+ Y
Sbjct: 169 HPVLGDTKY 177
>gi|336392943|ref|ZP_08574342.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420144918|ref|ZP_14652397.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403475|gb|EJN56717.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 294
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 52/290 (17%)
Query: 155 RVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDI 214
R+FK+VT + + T Q+ R+T + + P++ + I
Sbjct: 27 RLFKQVTGQGQILINGRLAASTGVRLQQNDRVT-------------IQLPPEKAAQQIAI 73
Query: 215 DWNS-RIIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH----- 267
+I E+ +V+DKPA +S+ G T+ + T +R G T
Sbjct: 74 STQPLNVIYADENWLVVDKPADLSSIPGPTNQTD----TLLNRVQGWLQQQNNTETVPHV 129
Query: 268 --QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
++D T G V+LAR + S+ R++ + + K Y A+ +A
Sbjct: 130 VTRLDRFTSGLVLLARHRFAHSLIARQLTDHTLDKRYYAI------------------VA 171
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
L + +L Q + +V GK E A ++KL TGRTHQ+
Sbjct: 172 GHLATTHGFLTQPLGRQGDEVRRRVMATGKPAKTEYWQMTKLARATLVEVKLHTGRTHQI 231
Query: 386 RAQLAACGAPIVGDSMY---MPAAIAQ--LSSPGLN---PFGKCQKEYAS 427
R A G P++GD +Y + I + L + LN PF + ++ + S
Sbjct: 232 RVHFADQGHPLLGDQLYGGPLDQGITRQALHAYELNFYDPFTQTERHFTS 281
>gi|312872184|ref|ZP_07732257.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|311092268|gb|EFQ50639.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
Length = 292
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KPAG TD CA++ LG + + H++D T G
Sbjct: 93 IIYENDDVLVINKPAGQKTHPNLYETDTALNDCASY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT----------TAPLPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A T LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLYRSYFAWIEATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK T K K++L TGRTHQ+R
Sbjct: 202 RMVRADGLKAITHYQVVKK------TANKIL---------------VKLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|339636643|emb|CCC15404.1| pseudouridine synthase [Lactobacillus pentosus IG1]
Length = 294
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 52/290 (17%)
Query: 155 RVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDI 214
R+FK+VT + + T Q+ R+T + + P++ + I
Sbjct: 27 RLFKQVTGQGQILINGRLAASTGVRLQQNDRVT-------------IQLPPEKAAQQIAI 73
Query: 215 DWNS-RIIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH----- 267
+I E+ +V+DKPA +S+ G T+ + T +R G T
Sbjct: 74 STQPLNVIYADENWLVVDKPADLSSIPGPTNQTD----TLLNRVQGWLQQQNNTETVPHV 129
Query: 268 --QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
++D T G V+LAR + S+ R++ + + K Y A+ +A
Sbjct: 130 VTRLDRFTSGLVLLARHRFAHSLIARQLTDHTLDKRYYAI------------------VA 171
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
L + +L Q + +V GK E A ++KL TGRTHQ+
Sbjct: 172 GHLTTTHGFLTQPLGRQGDEVRRRVMATGKPAKTEYWQMTKLARATLVEVKLHTGRTHQI 231
Query: 386 RAQLAACGAPIVGDSMY---MPAAIAQ--LSSPGLN---PFGKCQKEYAS 427
R A G P++GD +Y + I + L + LN PF + ++ + S
Sbjct: 232 RVHFADQGHPLLGDQLYGGPLDQGITRQALHAYELNFYDPFTQTERHFTS 281
>gi|325973159|ref|YP_004250223.1| tRNA pseudouridine synthase [Mycoplasma suis str. Illinois]
gi|325989602|ref|YP_004249301.1| putative pseudouridine synthase [Mycoplasma suis KI3806]
gi|323574687|emb|CBZ40343.1| probable pseudouridine synthase [Mycoplasma suis KI3806]
gi|323651761|gb|ADX97843.1| tRNA pseudouridine synthase [Mycoplasma suis str. Illinois]
Length = 337
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N+ +I + + + +P +S + + + +S + T + H++D EG
Sbjct: 103 NNDVIIINKKATQIVQPDSSSSNYSLEELLQSY--LKKKDPDSTYKPKFIHRLDKPVEGL 160
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
++ A+ + S+ + I+++K++K Y A+ P R + E W L
Sbjct: 161 IIGAKNAQAHSVLSQAIKDRKIQKFYKAIVLGCFP-------YREKQL------ENWILD 207
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQLAACGAP 395
+ + K G YSI + Y +IKL+TGR +Q+RAQL+ G P
Sbjct: 208 K----QSKVKVLDQENHGTKYSISIVRGIKKFPNYSIVEIKLVTGRKNQIRAQLSHLGYP 263
Query: 396 IVGDSMYM 403
IVGD Y
Sbjct: 264 IVGDRKYF 271
>gi|270290798|ref|ZP_06197022.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici 7_4]
gi|270280858|gb|EFA26692.1| ribosomal large subunit pseudouridine synthase D [Pediococcus
acidilactici 7_4]
Length = 304
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 49/192 (25%)
Query: 228 VVLDKPAGTS--------VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+V++KPAG +G + ++ A S A + H++D T G +++
Sbjct: 95 LVVNKPAGIKTHANQPHELGSMINFLQAYFAKKDSNAYNV-------HRLDQWTSGALLV 147
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVS 330
A+ I R+I +K +++ YL + T LP+G+ H R
Sbjct: 148 AKNPVVVPILSRQISQKLIQRTYLCVVEGHLKSRSGTITLPIGLDPHDQR---------- 197
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
+++ P A + + R +++L TGRTHQ+R LA
Sbjct: 198 ------------KRQINGPGAQPATTHYQVVREFVERSL---LRVQLATGRTHQIRVHLA 242
Query: 391 ACGAPIVGDSMY 402
A G PIVGD +Y
Sbjct: 243 ALGHPIVGDPLY 254
>gi|433520986|ref|ZP_20477688.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
61103]
gi|432262770|gb|ELL18005.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
61103]
Length = 330
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N +L
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVKLP 195
Query: 330 SEGWYLCQLEVMECKKVPWPDA-TVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M A TV + S G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|330825467|ref|YP_004388770.1| pseudouridine synthase [Alicycliphilus denitrificans K601]
gi|329310839|gb|AEB85254.1| pseudouridine synthase [Alicycliphilus denitrificans K601]
Length = 316
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+I + ++ E +V DKP V ++ + R LGL L H+ID
Sbjct: 87 EIPFQETVLYQDEHILVADKPHFLPVVPAGRYLQHTLLVRLKRRLGLRE-LSPVHRIDRD 145
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G V+ + + + R+++V+K+Y A+ AP + P A RL G
Sbjct: 146 TAGLVLFSVQRATRGRYQALFRDRQVRKVYEAV--APWRADLRF----PRTHASRLQESG 199
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ EV P+A + + GW +++ +TG+ HQ+R +AA
Sbjct: 200 HFFRMHEVPGE-----PNAVTAMDVAEQAGGWA------RYRLEPVTGKRHQLRVHMAAL 248
Query: 393 GAPIVGDSMY 402
G P+ GD Y
Sbjct: 249 GLPLCGDGFY 258
>gi|224013634|ref|XP_002296481.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968833|gb|EED87177.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 536
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 104/298 (34%), Gaps = 98/298 (32%)
Query: 199 LRVHVHPKRFPRCYDIDWN------------SRIIAVTESHV------------------ 228
LRVH P RF ++DW+ I+ ++HV
Sbjct: 175 LRVHYMPDRFHNANEVDWSRYCKSLLLDGGSGAIVGGVKAHVPMTKLPDKKDGVLVYVDD 234
Query: 229 -----VLDKPAGTSVGGTTDNIEESCATFASRALG-----------LTTPLRTTHQIDNC 272
VL+KP G T N E + +L ++ P+R ++
Sbjct: 235 DLGFTVLNKPGGIPTHSTISNHAEDVVSMYRASLKEERGDEAHTPHVSIPIRMEPEM--- 291
Query: 273 TEGCVVLARTQEYCSIFHRKIREKK--------------VKKLYLALTTAPLPVGI---- 314
G + + +E+C+ +++ K VKK Y L P I
Sbjct: 292 -YGLTLASTKKEFCAYITKQLAASKELHDENSSNGNSIPVKKSYRVLVCIKNPDDIDRIE 350
Query: 315 ------MTHYMRPINIAPRLV--------SEGWYLCQLEVMECKKVPWPDATVGKAYSIE 360
+ HY+ P++ P+ + W C + + + A V Y+
Sbjct: 351 KMVGKTLEHYVDPVSPTPKKFVRNKPKSSNHDWQQCLMLITSVGDTKFRAACVSSKYTDS 410
Query: 361 ------------DCGWPSRD----YAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
D P+ D Y + +++LLT + HQ+R QLAA G PIVGD+ Y
Sbjct: 411 NDFTLAHRLWCPDMDHPAEDLGVSYVMQLELELLTAKPHQIRGQLAALGCPIVGDTPY 468
>gi|238854112|ref|ZP_04644459.1| pseudouridine synthase, RluA family [Lactobacillus gasseri 202-4]
gi|311110296|ref|ZP_07711693.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Lactobacillus gasseri MV-22]
gi|238833188|gb|EEQ25478.1| pseudouridine synthase, RluA family [Lactobacillus gasseri 202-4]
gi|311065450|gb|EFQ45790.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Lactobacillus gasseri MV-22]
Length = 282
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 33/184 (17%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP G T N++E A L H++D T G +++A+
Sbjct: 92 LVIDKPTGQK---THPNLDEKDTALNDCATYLGYSPFIVHRLDMLTNGLLLVAKNPAVVP 148
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
I +R++ K + + YLA VS+ L Q +
Sbjct: 149 ILNRQLTNKTLHREYLAW-----------------------VSKSNQLKQSGTISLSIGH 185
Query: 348 WPDATVGKAYSIE-DCGWPSRDYAYEC------KIKLLTGRTHQVRAQLAACGAPIVGDS 400
PD + ++ + EC K+ L TGRTHQ+R LAA GAPI+GD
Sbjct: 186 DPDDQRKRMVRLDGQKAITHYEVIKECENKELVKLTLETGRTHQIRVHLAALGAPIIGDP 245
Query: 401 MYMP 404
+Y P
Sbjct: 246 LYNP 249
>gi|255732273|ref|XP_002551060.1| DRAP deaminase [Candida tropicalis MYA-3404]
gi|240131346|gb|EER30906.1| DRAP deaminase [Candida tropicalis MYA-3404]
Length = 590
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 28/190 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + +V+DKP+G V T + + G T + +++D T G +
Sbjct: 171 KIVYENDDILVIDKPSGIPVHPTGRYRYNTVTKIIEQEFGKT--VHPCNRLDRLTSGLMF 228
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN-IAPRLV-----SEG 332
L ++ + + +IR++ V K Y+A P+ + +P++ IAP+L E
Sbjct: 229 LGKSSKGANEMMSQIRDRNVSKEYIARVKGEFPIERIV-IEKPLSTIAPKLTLNVVDEEN 287
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ E P D +V K + LTGRTHQ+R L
Sbjct: 288 GKEAKTEFQRISYDPITDTSVVKCHP-------------------LTGRTHQIRVHLQYI 328
Query: 393 GAPIVGDSMY 402
G PI D MY
Sbjct: 329 GHPIANDPMY 338
>gi|312374039|gb|EFR21691.1| hypothetical protein AND_16535 [Anopheles darlingi]
Length = 912
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
LRT H++D T G ++ R+ + +IR ++V+K Y+ P G++ PI
Sbjct: 39 LRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRQVQKEYICRVEGEFPDGVI-ECKEPI 97
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGK--AYSIEDCGWPSRDYAYECKIKLLTG 380
+ ++ CK P GK + + G+ CK LTG
Sbjct: 98 EV-----------VSYKIGVCKVSP-----KGKECTTTFQKLGFNGSSSVVLCKP--LTG 139
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASD 428
R HQ+R L G P+V D +Y G + GK + D
Sbjct: 140 RMHQIRVHLQYLGYPVVNDPLYNHEVFGPAKGRGGDIGGKSDDQLVKD 187
>gi|261493033|ref|ZP_05989574.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496687|ref|ZP_05993066.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307656|gb|EEY08980.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311310|gb|EEY12472.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 320
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 32/196 (16%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ S+I+ +S +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELESQILYEDDSMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 200
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 201 NE---LASGERIVRVSEEGKPSET---RFSIEER------YANATLVKASPITGRTHQIR 248
Query: 387 AQLAACGAPIVGDSMY 402
G PI D Y
Sbjct: 249 VHTQYAGHPIALDDKY 264
>gi|116630078|ref|YP_815250.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus gasseri
ATCC 33323]
gi|420147934|ref|ZP_14655208.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus gasseri
CECT 5714]
gi|116095660|gb|ABJ60812.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus gasseri
ATCC 33323]
gi|398400602|gb|EJN54149.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus gasseri
CECT 5714]
Length = 285
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 39/187 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIE---ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V+DKP G D + CAT+ LG + P H++D T G +++A+
Sbjct: 95 LVIDKPTGQKTHPNLDEKDTALNDCATY----LGYS-PF-IVHRLDMLTNGLLLVAKNPA 148
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
I +R++ K + + YLA VS+ L Q +
Sbjct: 149 VVPILNRQLTNKTLHREYLAW-----------------------VSKSNQLKQSGTISLS 185
Query: 345 KVPWPDATVGKAYSIE-DCGWPSRDYAYEC------KIKLLTGRTHQVRAQLAACGAPIV 397
PD + ++ + EC K+ L TGRTHQ+R LAA GAPI+
Sbjct: 186 IGHDPDDQRKRMVRLDGQKAITHYEVIKECENKELVKLTLETGRTHQIRVHLAALGAPII 245
Query: 398 GDSMYMP 404
GD +Y P
Sbjct: 246 GDPLYNP 252
>gi|363420773|ref|ZP_09308864.1| pseudouridylate synthase [Rhodococcus pyridinivorans AK37]
gi|359735440|gb|EHK84401.1| pseudouridylate synthase [Rhodococcus pyridinivorans AK37]
Length = 306
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 198 YLRVHVHPKRFPRC-YDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRA 256
++ ++ P PR ++ID ++ E+ +V+DKP + + E+ +
Sbjct: 71 FVYLYRDPPAEPRVPFEID----VLHRDENLLVVDKPHFLATTPRGSWVTETAVVRLRKD 126
Query: 257 LGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSIFHRKIREKKVKKLYLALTTAPLPV 312
L L L H++D T G +V +E Y ++F R++ EK+ + + A P
Sbjct: 127 LDLPE-LSPVHRLDRLTAGVLVFTVRREARRAYQTLFDRRLVEKEYEAIAPAAPRLDFPR 185
Query: 313 GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE 372
+ + R+V E L EV D V SIE + D
Sbjct: 186 EVRS----------RIVKERGVLQAREV---------DGPVNAVTSIELVD--TADDRAR 224
Query: 373 CKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+++ TGRTHQ+R + + G PI+GD++Y
Sbjct: 225 YRLRPETGRTHQLRVHMNSLGIPILGDNLY 254
>gi|432936869|ref|XP_004082319.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
2-like [Oryzias latipes]
Length = 541
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I V + V V+DKPA V + + G++ L T H++D T G ++
Sbjct: 224 ILVDDGQVLVVDKPASIPVHPCGRFRHNTVIFILGKEYGVSE-LHTVHRLDRLTSGVLLF 282
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
ART E + +R+++++K Y+ P G + PI + VS LC+++
Sbjct: 283 ARTVETSKKLDKMVRDREIEKEYVCRVEGEFPEGELV-CEEPILV----VSFKVGLCRVD 337
Query: 340 --VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
EC+ V + GK + + LTGRTHQ+R L G PI+
Sbjct: 338 PKGKECRTVFQRLSFNGKTSVV--------------RCSPLTGRTHQIRVHLQFLGFPIL 383
Query: 398 GDSMYMPAA 406
D +Y +A
Sbjct: 384 NDPIYGSSA 392
>gi|442318450|ref|YP_007358471.1| RluA family pseudouridine synthase [Myxococcus stipitatus DSM
14675]
gi|441486092|gb|AGC42787.1| RluA family pseudouridine synthase [Myxococcus stipitatus DSM
14675]
Length = 309
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ E + +DKPAG T + S S LG L H++D T G V
Sbjct: 83 RVLFEDEEVLAVDKPAGLPAQPTEARVGGSLVDQVSAYLGREAGL--VHRLDRETSGVTV 140
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+ S + R +K Y+A T LP P++ P W +
Sbjct: 141 FGKEPRATSALAAEFRHGSARKRYVAATGPGLPASGTVDL--PLSRDPSRPGR-WRATR- 196
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPI 396
VP A + + ++ C ++LL TGRTHQ+RA L A GAPI
Sbjct: 197 ---AANGVP--------ALTHFRTLYAGAEF---CVVELLPQTGRTHQLRAHLTALGAPI 242
Query: 397 VGDSMYMPAA 406
+GDS Y AA
Sbjct: 243 LGDSRYGGAA 252
>gi|408533164|emb|CCK31338.1| ribosomal pseudouridine synthase [Streptomyces davawensis JCM 4913]
Length = 315
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E VV+DKP + +++E+ R LGL L H++D T G V+
Sbjct: 96 IVHRDEHIVVVDKPHFLATTPRGSHVKETALARLRRELGLPA-LGAAHRLDRLTAGLVLF 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
E + R+K V K Y A+ AP + P + R+V E L E
Sbjct: 155 TVRPEERGAYQTLFRDKLVHKEYEAV--APYDPALRL----PTTVRSRIVKERGELAARE 208
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V P+A V + E G D ++ TG+THQ+R + A G PI+GD
Sbjct: 209 VAGE-----PNA-VSRVELAEHRG----DGLGRYLLRPATGQTHQLRVHMTALGVPILGD 258
Query: 400 SMY 402
+Y
Sbjct: 259 PLY 261
>gi|379796205|ref|YP_005326204.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873196|emb|CCE59535.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 273
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENNITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMLKENVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|182439619|ref|YP_001827338.1| ribosomal pseudouridine synthase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468135|dbj|BAG22655.1| putative ribosomal pseudouridine synthase [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 312
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 21/208 (10%)
Query: 195 AGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS 254
AG YL H + F + + ++ E VV DKP + +I E+ A
Sbjct: 78 AGRYLWFH---RDFSPEEPVPFPVGVVYRDERIVVADKPHFLATMPRGRHITETAAARLR 134
Query: 255 RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
R L L L+ H++D T G V+ E + R+++V+K Y AL V +
Sbjct: 135 RELELPA-LQPAHRLDRLTAGLVLFVVRPEDRGAYQTLFRDRRVRKEYEALAPYDPDVAL 193
Query: 315 MTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECK 374
P + R+V E V+ ++ P + + +E G R +
Sbjct: 194 ------PRTVRSRIVKE------RGVLAAREEPGEANSESRVELVERRGGVGR-----YR 236
Query: 375 IKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ TGRTHQ+R + A G PIV D +Y
Sbjct: 237 LLPATGRTHQLRVHMNALGLPIVHDPLY 264
>gi|119897905|ref|YP_933118.1| ribosomal large subunit pseudouridine synthase C [Azoarcus sp.
BH72]
gi|119670318|emb|CAL94231.1| ribosomal large subunit pseudouridine synthase C [Azoarcus sp.
BH72]
Length = 319
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ++ +V+DKP+G +V G + ++ L L H++D T G +++
Sbjct: 92 VVFEDDALLVVDKPSGKAVHGGSGVSYGVIEQLRTQRPELRM-LELAHRLDRETSGLLIV 150
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + + H +RE +V+K YL L + M H P+ L EG
Sbjct: 151 AKKRSALTALHDMMREGQVEKRYLTLVPGRW-MNPMQHVKAPL--LKYLTPEGE------ 201
Query: 340 VMECKKVPWPDATVGK-AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
++V D GK A+SI DY+ +++L TGRTHQ+R L G P+ G
Sbjct: 202 ----RRVRVSDE--GKPAHSIVRLVQRWADYSL-LEVELKTGRTHQIRVHLTHLGFPLCG 254
Query: 399 DSMYMPAAI-AQLSSPGLN 416
D Y A+ +L GL
Sbjct: 255 DDKYGDFALNKRLEGEGLR 273
>gi|407768788|ref|ZP_11116166.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407288472|gb|EKF13950.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 269
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 11/188 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
D + ++ + +VL+KP G + G A G+ H++D T
Sbjct: 8 DLTASVLHRDSNVIVLNKPPGLASHGGPKTYFHVDAYLPDLKFGIQPEPTLAHRLDRDTA 67
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY 334
GC++L R + R EK + K Y A+ + H I GW
Sbjct: 68 GCLLLCRHPKSSKKITRLFTEKLIGKTYWAVVRGAV---ADDHGFIDAPIGKTNDESGWR 124
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ E + K + GK + +D W + TGRTHQ+R L G
Sbjct: 125 MLVHEDGQPSKTEYRVLGRGKDEAGDDITW--------LALTPHTGRTHQLRVHLDHIGH 176
Query: 395 PIVGDSMY 402
P++GD Y
Sbjct: 177 PVLGDPFY 184
>gi|393783183|ref|ZP_10371360.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
gi|392670380|gb|EIY63863.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
Length = 223
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 220 IIAVTESHVVL-DKPAGTSVGGTTDN-IEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I T S +V DK T + T I+E A + +G+T H++D G V
Sbjct: 12 VINKTASEIVQGDKTGDTPLSETVKQYIKEKYAKPGNVFIGVT------HRLDRPVSGLV 65
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEGWYL 335
+LA+T + S + + +VKK Y A+ P G + H++ Y
Sbjct: 66 ILAKTSKALSRLNEMFKNSEVKKTYWAIVKEIPKEPEGELVHFL-----VRNEKQNKSYA 120
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
+ EV KK +G+ S++Y Y ++ L TGR HQ+R QLA G P
Sbjct: 121 YEKEVPGSKKAILYYRLIGR----------SQNY-YLLEVDLKTGRHHQIRCQLAKMGCP 169
Query: 396 IVGDSMY 402
I GD Y
Sbjct: 170 IKGDLKY 176
>gi|325913377|ref|ZP_08175744.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
gi|325477303|gb|EGC80448.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
Length = 292
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KPAG TD CA + LG + + H++D T G
Sbjct: 93 IIYENDDVLVINKPAGQKTHPNLYETDTALNDCANY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A A LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIDATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK+ G + K++L TGRTHQ+R
Sbjct: 202 RMVRTDGLKAITHYQVVKKI-------GSKILV--------------KLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|430761113|ref|YP_007216970.1| Ribosomal large subunit pseudouridine synthase C [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010737|gb|AGA33489.1| Ribosomal large subunit pseudouridine synthase C [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 319
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + ++VLDKPAG +V G T A R L L H++D T GC+VL
Sbjct: 93 VVFEDDDYLVLDKPAGLAVHGGTGL--AFGLIEAMRELRPGVALELGHRLDRETSGCLVL 150
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
+++ + H +R V+K YLAL G H P IA G +
Sbjct: 151 TKSRRALTALHSALRAGGVEKRYLALLVGRWQGG-ARHCDLP--IARGRDDSGRRRMRSP 207
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
E V ++ +E G D+ ++ + TGRTHQ+R +A G P+ GD
Sbjct: 208 AQEEGDVARSATSL--FTPLEGFG----DFTL-MEVNIGTGRTHQIRVHASALGHPVAGD 260
Query: 400 SMY 402
Y
Sbjct: 261 HDY 263
>gi|408828079|ref|ZP_11212969.1| ribosomal pseudouridine synthase [Streptomyces somaliensis DSM
40738]
Length = 303
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 17/183 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E VV DKP + ++ E+ R LGL L+ H++D T G V+
Sbjct: 93 IVHRDERIVVADKPHFLATTPRGRHVAETALARLRRDLGLPH-LQPAHRLDRLTAGLVLF 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
E + R+++V+K Y AL AP G+ P + +V E + E
Sbjct: 152 VVRPEDRGAYQTLFRDRRVRKEYEAL--APYDPGVAL----PATVRSHIVKERGVVAAYE 205
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V P A IE R ++ TGRTHQ+R ++A G PI+ D
Sbjct: 206 V--------PGAEPNSESRIELV--ERRGGLGRYRLVPETGRTHQLRVHMSALGVPILDD 255
Query: 400 SMY 402
+Y
Sbjct: 256 PLY 258
>gi|94970372|ref|YP_592420.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Koribacter versatilis Ellin345]
gi|94552422|gb|ABF42346.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Koribacter versatilis Ellin345]
Length = 333
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 57/202 (28%)
Query: 229 VLDKPAG--TSVGGTTDNIEESCATFAS------RALG-LTTPLR--TTHQIDNCTEGCV 277
V++KPAG VG E + T + RAL + +R H++D T G +
Sbjct: 93 VINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDMRPGIVHRLDKETSGLI 152
Query: 278 VLARTQEYCSIFHRKIRE----KKVKKLYLALT---------TAPLPVGIMTHYMRPINI 324
V+A+ + HRK+ E ++V K Y+AL T LP+ R ++
Sbjct: 153 VVAKN----DVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPIA------RDMSR 202
Query: 325 APRLVSEGW----YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
R+ + G L EV E + P+ GK +E +K+ TG
Sbjct: 203 RTRMTTRGSGGRDALSHYEVKEKIESPY-----GKFALVE--------------VKIETG 243
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQ+R +A+ G P+VGD++Y
Sbjct: 244 RTHQIRVHMASLGHPVVGDTLY 265
>gi|386347905|ref|YP_006046154.1| pseudouridine synthase [Spirochaeta thermophila DSM 6578]
gi|339412872|gb|AEJ62437.1| pseudouridine synthase [Spirochaeta thermophila DSM 6578]
Length = 256
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 221 IAVTESHVVLDKPAGTSVGGTTDNIEESCATFA----SRALGLTTP--LRTTHQIDNCTE 274
I ++H++ +G + D ++ + F R G P L +++D T
Sbjct: 3 IIYEDAHIIAVNKSGEELVQQNDVMKGTLQEFLLEHLRRRDGAGAPPRLHLVNRLDRPTS 62
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP--LPVGIMTHYMRPINIAPRLVSEG 332
G V+ AR ++ F R + V KLY A+ AP LP + H++ + R V++
Sbjct: 63 GIVLFARHRKAAGKFSDLFRRRGVYKLYWAVLDAPPPLPSDTVEHFI----VESRRVNKS 118
Query: 333 W-YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ + + E E ++ + G Y + ++L TGR HQ+RAQ +A
Sbjct: 119 FAFPEKRERSEYARLSYQVIGSGDCY-------------FFVVVRLHTGRHHQIRAQFSA 165
Query: 392 CGAPIVGDSMY 402
G I GD Y
Sbjct: 166 LGCHIKGDIKY 176
>gi|388567414|ref|ZP_10153848.1| RluA family pseudouridine synthase [Hydrogenophaga sp. PBC]
gi|388265436|gb|EIK90992.1| RluA family pseudouridine synthase [Hydrogenophaga sp. PBC]
Length = 345
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 38/224 (16%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSV-------GGTTDN 244
V AG ++V + P R + + + + + H+ V+DKPAG V GGT N
Sbjct: 85 VSAGDAVQVTLRPTPQARAFVAEPMALDVVFEDEHLLVIDKPAGLVVHPAAGHWGGTLLN 144
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ A+ H++D T G +++A++++ I ++V + YLA
Sbjct: 145 GLLAHHAGAA----ALPRAGIVHRLDKDTSGLMMVAKSRQAMQALVNAIAAREVGRQYLA 200
Query: 305 LTTAPLPVGIMTHYMRPINIAPR------LVSEGWYLCQLEVMECKKVPWPDATVGKAYS 358
+ + PI PR +V EG GK
Sbjct: 201 IAHGAWRHEGLRSVREPIGRDPRNRLRMAVVGEG--------------------AGKPAQ 240
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ D A KL TGRTHQ+R +A G P+VGD++Y
Sbjct: 241 SDFLALDRSDDAMLVACKLHTGRTHQIRVHMAWLGHPLVGDALY 284
>gi|325954258|ref|YP_004237918.1| pseudouridine synthase [Weeksella virosa DSM 16922]
gi|323436876|gb|ADX67340.1| pseudouridine synthase [Weeksella virosa DSM 16922]
Length = 227
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR 320
L H++D T G ++ A+T + + + ++++V K+Y AL P +THY+R
Sbjct: 54 LGLVHRLDRPTSGIIMFAKTSKALARMNDAFQKREVTKVYRALIQGKPPKEHDRLTHYLR 113
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLT 379
K + T +I + W +YE ++L T
Sbjct: 114 K-----------------NQKNNKTTVFSQPTNNAKEAILEYYWVGSLDSYEVLDVQLFT 156
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GR+HQ+RAQL+ G PI GD Y
Sbjct: 157 GRSHQIRAQLSFIGCPIKGDLKY 179
>gi|421090446|ref|ZP_15551238.1| RNA pseudouridine synthase [Leptospira kirschneri str. 200802841]
gi|421129278|ref|ZP_15589479.1| RNA pseudouridine synthase [Leptospira kirschneri str. 2008720114]
gi|410000660|gb|EKO51288.1| RNA pseudouridine synthase [Leptospira kirschneri str. 200802841]
gi|410359474|gb|EKP06572.1| RNA pseudouridine synthase [Leptospira kirschneri str. 2008720114]
Length = 293
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N RI +ES ++ +KP G V T D+ E+ + L L LRT +++D T G
Sbjct: 6 NIRIFYESESFLLAEKPPGIPVHATKDSKRENFTDQLQKQLSLEY-LRTVNRLDLDTSGL 64
Query: 277 VVL----ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVS 330
V + +E I + K+YL +T+ +P T Y++ N R V
Sbjct: 65 VFFCKNPNKNKEADQILKNSL------KIYLCVTSGVIPEKHFTETCYIKDGNKKVRKVF 118
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G E + K+ + +V A KL TG+ HQ+R L+
Sbjct: 119 SGGDKAVTEFLTLKQNSKENYSVLLA-------------------KLHTGKRHQIRFHLS 159
Query: 391 ACGAPIVGDSMY 402
G PI+GD +Y
Sbjct: 160 EKGYPILGDCVY 171
>gi|422878809|ref|ZP_16925275.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK1059]
gi|422928657|ref|ZP_16961599.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis ATCC 29667]
gi|422931632|ref|ZP_16964563.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK340]
gi|332366862|gb|EGJ44603.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK1059]
gi|339616299|gb|EGQ20951.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis ATCC 29667]
gi|339619932|gb|EGQ24507.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK340]
Length = 295
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 29/234 (12%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
K F +D + ++ E +VLDKPAG + + ++ + +G +
Sbjct: 64 KGFESLKAVDKDLYVVYEDEHFLVLDKPAGVASIPSVNHTNTMANFVKAYYIGQGYENQQ 123
Query: 266 TH---QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
H ++D T G ++ A+ + +++++K ++K Y AL + + PI
Sbjct: 124 VHIVTRLDKDTSGLMLFAKHGYAHARLDKQLQKKLIEKRYYALVRGTGDLEEQGEIIAPI 183
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYS-IEDCGWPSRDYAYECKIKLLTGR 381
P E + ++V +Y IE G Y I+L TGR
Sbjct: 184 GRNP------------ESIITRRVTEDGKYAHTSYKVIEQFGD-----VYLVDIRLHTGR 226
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS 427
THQ+R + G P++GD +Y + + L NPF + E AS
Sbjct: 227 THQIRVHFSHIGFPLLGDDLYGGSLEHGIERQALHCHSLKFYNPFSGQEVERAS 280
>gi|395242583|ref|ZP_10419580.1| Ribosomal large subunit pseudouridine synthase [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480315|emb|CCI85820.1| Ribosomal large subunit pseudouridine synthase [Lactobacillus
pasteurii CRBIP 24.76]
Length = 284
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 31/183 (16%)
Query: 228 VVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++++K AG TD CAT+ L H++D T G +++A+
Sbjct: 90 LIINKKAGQKTHPNLFETDTALNDCATY------LHASPYIVHRLDMLTSGLLLVAKNPI 143
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG---WYLCQLEVM 341
S+ +R++ K+ K+ YLA +N+ + S G + + Q
Sbjct: 144 VVSLLNRQLISKEFKRDYLA----------------KVNLNSEIASSGTIDFPIGQDLAD 187
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
+ K+ P+ KA + D A K+ L TGRTHQ+R LAA G PI+GD +
Sbjct: 188 QRKRKVDPNGL--KAITHYQIIKKDADTA-TLKLSLDTGRTHQIRVHLAAIGCPIIGDPL 244
Query: 402 YMP 404
Y P
Sbjct: 245 YNP 247
>gi|384246825|gb|EIE20314.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 225
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 250 ATFASRALG-LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+ +R L L P H++D T G V+ A++ + + H + R ++ +K YLAL+
Sbjct: 30 GSLVNRVLNYLGKPPHPLHRLDMNTSGVVLFAKSPDIVATMHDQFRNQQAQKQYLALS-- 87
Query: 309 PLPVGIMTHYMR--PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
L + + ++ PI + P L S +L C A KA+S+ +
Sbjct: 88 -LGIPSQSSFVEDGPIGMHPSLNSN-RHLDATHARHC-------ARSLKAFSL------N 132
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
R + C TGRTHQ+R LA G PI GD +Y
Sbjct: 133 RQASLLC-CAPRTGRTHQIRVHLAHAGHPIAGDEIY 167
>gi|357632803|ref|ZP_09130681.1| pseudouridine synthase, RluA family [Desulfovibrio sp. FW1012B]
gi|357581357|gb|EHJ46690.1| pseudouridine synthase, RluA family [Desulfovibrio sp. FW1012B]
Length = 558
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 88/213 (41%), Gaps = 37/213 (17%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR--------TTHQID 270
R++ + VLDKP G +V E T +R L LR H++D
Sbjct: 92 RVLYADKELAVLDKPPGLTVHPAPGLPE---GTLVNRLLHHFPGLREMAGERPGIVHRLD 148
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G +++A T+ ++V K YLAL P G PI P+
Sbjct: 149 KDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHG-RPDGKGGDIRLPIGRDPK--- 204
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRD-YAYECKIKLLTGRTHQVRAQL 389
Y ++ V P A+S W + D A ++ + TGRTHQ+R +
Sbjct: 205 ---YRTKMAVPHKGGRP--------AHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHM 253
Query: 390 AACGAPIVGDSMYMP----------AAIAQLSS 412
AA G PI+GD++Y P AIA+L+S
Sbjct: 254 AAIGHPIIGDAVYGPHQHAAWKRRGGAIARLAS 286
>gi|170717346|ref|YP_001784455.1| 23S rRNA pseudouridylate synthase C [Haemophilus somnus 2336]
gi|168825475|gb|ACA30846.1| pseudouridine synthase, RluA family [Haemophilus somnus 2336]
Length = 326
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 23/193 (11%)
Query: 228 VVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+G +V GG+ N E+ T A L H++D T G +++A+ +
Sbjct: 108 LVLNKPSGLAVHGGSGLNFGAIEALRTLRPEA----RFLELVHRLDRDTSGILLIAKKRS 163
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
H ++REK ++K YLAL G + + I AP L SE +++
Sbjct: 164 ALRSLHEQLREKTIQKEYLALVR-----GHWQSHCKMIQ-APLLKSE--LTSGERIVKVS 215
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
+ P T +S+E+ + A K +TGRTHQ+R G PI D Y
Sbjct: 216 EQGKPSET---KFSVEE----RYNNATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGD 268
Query: 405 AAI-AQLSSPGLN 416
Q+++ GLN
Sbjct: 269 KNFNQQMTALGLN 281
>gi|402551687|ref|YP_006600406.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6282]
gi|401800382|gb|AFQ03698.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6282]
Length = 323
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGT--------SVGGTTDNIEESCA--TFASRALGLTTPLRTTHQ 268
+II E+ +V+DKP G S+ ++ + + C F S L H+
Sbjct: 89 KIIFEDENIIVIDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF--AHR 146
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPR 327
ID T G V+ A+T + ++ + + K Y L +G+ T Y + N
Sbjct: 147 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHLGLQTAYWKKDN---- 202
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ G ++ K P+P+A + E+ + ++ I+L++GRTHQ+RA
Sbjct: 203 --NNG-------IVTVKWKPFPEAKKISTF-FENSSYIAQKDMSLITIRLISGRTHQIRA 252
Query: 388 QLAACGAPIVGDSMY 402
L +VGD Y
Sbjct: 253 CLNLFSNQLVGDKKY 267
>gi|375108149|ref|ZP_09754410.1| 23S RNA-specific pseudouridylate synthase [Burkholderiales
bacterium JOSHI_001]
gi|374668880|gb|EHR73665.1| 23S RNA-specific pseudouridylate synthase [Burkholderiales
bacterium JOSHI_001]
Length = 235
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + + V +DKPAG V T+ + E L PL H++D T G ++
Sbjct: 10 VLHLDDDLVAIDKPAGLLVHATSLDAHEMRNALDLLRAQLGLPLWPLHRLDKATSGVLLF 69
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGW----Y 334
AR + + V K YLAL P G++ +P+ P S G
Sbjct: 70 ARHADAARTLGAAFADGLVGKRYLALVRGWPAEQGLID---QPLARDPEQPSTGQPQLPA 126
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
L + + + + P+PD S YA ++ LTGR HQ+R
Sbjct: 127 LTRWQRLATFEWPFPDGRHA-----------SSRYAL-VAVQPLTGRRHQIRRHFKHIAH 174
Query: 395 PIVGDSMY 402
P+VGDS +
Sbjct: 175 PLVGDSTH 182
>gi|427439615|ref|ZP_18924226.1| pseudouridylate synthase, 23S RNA-specific [Pediococcus lolii NGRI
0510Q]
gi|425788070|dbj|GAC45014.1| pseudouridylate synthase, 23S RNA-specific [Pediococcus lolii NGRI
0510Q]
Length = 315
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 41/196 (20%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
++ + +V++KPAG + S F H++D T G ++
Sbjct: 98 VLFENDDLLVVNKPAGIKTHANQPHELGSMINFLQAYFAKKDANAYNVHRLDQWTSGALL 157
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLV 329
+A+ + R+I +K +++ YL + T LP+G+ H R
Sbjct: 158 VAKNPVVVPVLSRQISQKLIQRTYLCMVEGHLKSRSGTITLPIGLDPHDQR--------- 208
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKA-YSIEDCGWPSRDYAYE--CKIKLLTGRTHQVR 386
+++ P+A Y + R++A ++L TGRTHQ+R
Sbjct: 209 -------------KRQINGPEAQPATTHYQV------VREFAERSLLLVQLATGRTHQIR 249
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PIVGD +Y
Sbjct: 250 VHLAALGHPIVGDPLY 265
>gi|160892611|ref|ZP_02073401.1| hypothetical protein CLOL250_00141 [Clostridium sp. L2-50]
gi|156865652|gb|EDO59083.1| pseudouridine synthase, RluA family [Clostridium sp. L2-50]
Length = 328
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDN--IEESCATFASRALGLTTP-LRTT-----HQID 270
II E+ ++ DKPAG S + D+ E+ + + +TT LRT +++D
Sbjct: 91 IIYSDENILIADKPAGVLSQKASKDDYSFNEALIDYLLDSGHITTEELRTYRPSVCNRLD 150
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLV 329
T G ++ + R IRE + K Y L L + T Y++ N +
Sbjct: 151 RNTSGLILCGVSLTGSQELSRIIREHLLHKYYYTLVRGRLTQKLDSTCYLQKDNAKNK-- 208
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR---DYAYECKIKLLTGRTHQVR 386
+ PW GK+ I +P + DY K++L+TG++HQ+R
Sbjct: 209 -----------VRISDRPWEQ---GKSEEIHSIFYPVKKNDDYTL-VKVELITGKSHQIR 253
Query: 387 AQLAACGAPIVGDSMY 402
AQL G P+VGD+ Y
Sbjct: 254 AQLKHLGYPVVGDTKY 269
>gi|418289652|ref|ZP_12901914.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NM220]
gi|372203157|gb|EHP16871.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NM220]
Length = 330
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RTFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP ++ + +
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---DDNFHVKLPLFKYTG 201
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
++G + + V E + V +S + + L TGRTHQ+R L
Sbjct: 202 AQGEKMVR--VSEDGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHL 259
Query: 390 AACGAPIVGDSMY 402
+ G PI GD Y
Sbjct: 260 QSQGCPIAGDERY 272
>gi|188995238|ref|YP_001929490.1| ribosomal large subunit pseudouridine synthase D [Porphyromonas
gingivalis ATCC 33277]
gi|188594918|dbj|BAG33893.1| putative ribosomal large subunit pseudouridine synthase D
[Porphyromonas gingivalis ATCC 33277]
Length = 227
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G VV A+T + + + R+ KV+K+Y A+ P + HY
Sbjct: 51 LGVAHRLDRPVAGLVVFAKTSKALARLNNMFRDGKVQKVYRAIVKQRPPKDGDTLVHY-- 108
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
I+ RL +C KVP K S+ S D + +I+L TG
Sbjct: 109 -ISRNERLNKSFASVC--------KVPN-----SKKASLSYRLLASSDNYHLLEIELHTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLAA G PI GD Y
Sbjct: 155 RHHQIRCQLAAMGCPIKGDLKY 176
>gi|409351020|ref|ZP_11233906.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
gi|407877034|emb|CCK85964.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
Length = 286
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Query: 220 IIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ++ ++++KP G G CAT+ LG + + H++D T G
Sbjct: 82 IVYEDDNILIINKPKGQKTHPNQGENGTALNDCATY----LGYSPYI--VHRLDMLTGGL 135
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTT--APLPVGI-----MTHYMRPINIAPRLV 329
+++A+ I +R++ K +K+ Y+A +PL VG + P + R+V
Sbjct: 136 LLVAKNPAVVPILNRQLISKTLKRDYVAEVDLLSPLNVGAAGTISLKVGQDPDDQRKRMV 195
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
E T + ++++ +R + L TGRTHQ+R L
Sbjct: 196 REDGLRA--------------VTHYQVLAVDEAKRRAR-----VALSLETGRTHQIRVHL 236
Query: 390 AACGAPIVGDSMYMPAA 406
AA G PIVGD +Y P A
Sbjct: 237 AASGWPIVGDPLYNPLA 253
>gi|381179133|ref|ZP_09887993.1| pseudouridine synthase, RluA family [Treponema saccharophilum DSM
2985]
gi|380768968|gb|EIC02947.1| pseudouridine synthase, RluA family [Treponema saccharophilum DSM
2985]
Length = 330
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 40/209 (19%)
Query: 218 SRIIAVTESHVVLDKPAG--TSVG--GTTDNIEESCATF-----ASRALGLTTP--LRTT 266
S ++ +S +V++KP+ T G G+ DN+ ++ F +R + P +
Sbjct: 94 SDVLFEDDSVIVVNKPSMFPTEAGMVGSRDNLHDAVVRFLFAREKARNPNMRNPPYVGIM 153
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT--------APLPVGIMTHY 318
H++D T G ++ +T+ S H +K Y A++T + P +
Sbjct: 154 HRLDRETSGAILFTKTRAANSPCHDMFENHTARKTYRAVSTDCGCCFPLSEFPFSFAVSF 213
Query: 319 MRPIN-IAPRLVSEGWYLCQL----EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
P+ I+P+ + W + E + DA KAY++E C
Sbjct: 214 --PMGRISPKSQAAKWGKVSTGGVDSLTEFTVLGRIDAGGKKAYAVE------------C 259
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ LTGRTHQ+R LA+ G PI+GD +Y
Sbjct: 260 RP--LTGRTHQIRVHLASVGLPILGDELY 286
>gi|336412130|ref|ZP_08592587.1| hypothetical protein HMPREF1018_04605 [Bacteroides sp. 2_1_56FAA]
gi|335938883|gb|EGN00763.1| hypothetical protein HMPREF1018_04605 [Bacteroides sp. 2_1_56FAA]
Length = 221
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPI 322
TH++D G V+ A+T + S + + +VKK Y A+ P G + HY+
Sbjct: 53 VTHRLDRPVSGLVIFAKTSKALSRLNEMFKNSEVKKTYWAIVKNCPKQPEGELVHYLVRN 112
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
R Y EV KK +G + D+ + ++ L TGR
Sbjct: 113 EKQNR-----SYAYDKEVPNSKKAILNYKLIGHS-----------DHYFLLEVDLKTGRH 156
Query: 383 HQVRAQLAACGAPIVGDSMYMPA 405
HQ+R QLA G PI GD Y A
Sbjct: 157 HQIRCQLAKMGCPIKGDLKYGSA 179
>gi|429218354|ref|YP_007179998.1| RluA family pseudouridine synthase [Deinococcus peraridilitoris DSM
19664]
gi|429129217|gb|AFZ66232.1| pseudouridine synthase, RluA family [Deinococcus peraridilitoris
DSM 19664]
Length = 302
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 55/248 (22%)
Query: 185 RITHVDQIVEAGTYLRVHVHP---KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGT 241
R + + AG L H P + PR Y++ + ++ + ++KP G
Sbjct: 52 RPARAHETLRAGQILVWHRPPWQEHKAPRHYEVLFEDDVL------LAVNKPGGLPTLPG 105
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+E + PL H++ T G V+ ART + + R R++ ++K+
Sbjct: 106 AGYLENTLLQLVRARTPHAAPL---HRLGRATSGLVLFARTPQAAAQLSRAWRDRAIQKI 162
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV-----PWPDATVGKA 356
Y AL + G+ H EC + P P +G
Sbjct: 163 YRALAS-----GVAEH------------------------ECYDIHAPIGPVPHPRLGTV 193
Query: 357 YSIEDCGWPSRDYAYECK---------IKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
++ G +R A + + + TGR HQ+R LA G P+ GD +Y +
Sbjct: 194 HAASPDGKAARSVARPLERRADTTLFEVDIHTGRPHQIRIHLACVGHPLQGDPLYGTGGL 253
Query: 408 AQLSSPGL 415
PGL
Sbjct: 254 PGSQHPGL 261
>gi|452956788|gb|EME62174.1| RNA pseudouridylate synthase [Amycolatopsis decaplanina DSM 44594]
Length = 298
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 18/197 (9%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+ P ++ ++ ++ E ++ DKP + +I ++ R L L L
Sbjct: 58 RDLPDEVEVPFDVSVVHRDEHFLIADKPHFLATIPRGRHILQTALVRLRRELDLPQ-LSP 116
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G ++ T+E + R++ V K Y A+ V + P I+
Sbjct: 117 AHRLDRVTAGLILFVITREVRGKYQTMFRDRLVHKEYEAIARYDPDVAM------PCEIS 170
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
R+V E V+ ++V P + IE RD ++ TGRTHQ+
Sbjct: 171 SRIVKERG------VIAAQEVDGPPNAETRVELIE-----HRDGLGRYRLIPATGRTHQL 219
Query: 386 RAQLAACGAPIVGDSMY 402
R ++ G PI+GD Y
Sbjct: 220 RLHMSGLGLPILGDDFY 236
>gi|418677763|ref|ZP_13239037.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687639|ref|ZP_13248798.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742111|ref|ZP_13298484.1| RNA pseudouridine synthase [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
gi|400320953|gb|EJO68813.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410737963|gb|EKQ82702.1| RNA pseudouridine synthase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750469|gb|EKR07449.1| RNA pseudouridine synthase [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
Length = 293
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N RI +ES ++ +KP G V T D+ E+ + L L LRT +++D T G
Sbjct: 6 NIRIFYESESFLLAEKPPGIPVHATKDSKRENFTDQLQKQLSLEY-LRTVNRLDLDTSGL 64
Query: 277 VVL----ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVS 330
V + +E I + K+YL +T+ +P T Y++ N R V
Sbjct: 65 VFFCKNPNKNKEADQILKNSL------KIYLCVTSGVIPEKHFTETCYIKDGNKKVRKVF 118
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G E + K+ + +V A KL TG+ HQ+R L+
Sbjct: 119 SGGDKAVTEFLTLKQNSKENYSVLLA-------------------KLHTGKRHQIRFHLS 159
Query: 391 ACGAPIVGDSMY 402
G PI+GD +Y
Sbjct: 160 EKGYPILGDCVY 171
>gi|317154635|ref|YP_004122683.1| RluA family pseudouridine synthase [Desulfovibrio aespoeensis
Aspo-2]
gi|316944886|gb|ADU63937.1| pseudouridine synthase, RluA family [Desulfovibrio aespoeensis
Aspo-2]
Length = 305
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT-THQIDNCTEGCVVLARTQ 283
+ +V+ KPAG +V G D I +S A + A T H++D T G ++ ART
Sbjct: 92 DRMLVIAKPAGLAVHGG-DGISDSVAGRLAAAFADADFKPTLAHRLDRDTSGLLLAARTY 150
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
+ + + + KLYL T + P + L+ + QLE
Sbjct: 151 DALRDLNDRFAAGTIGKLYLTWVTG--------RWREPGTV---LLED-----QLEKRGA 194
Query: 344 ----KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
K P D + +A + C + ++LLTGRTHQ+R QLA+ G P+ GD
Sbjct: 195 PGSEKVEPVRDGSGKEALARVACLLAGEKRSL-LAVRLLTGRTHQIRVQLASRGHPVAGD 253
Query: 400 SMYMPA 405
Y PA
Sbjct: 254 GKYGPA 259
>gi|194467273|ref|ZP_03073260.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
gi|194454309|gb|EDX43206.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
Length = 306
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 37/204 (18%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT----HQIDNCTEGCVVLARTQ 283
+V++KP G T N T + G H+ID T G V++A+
Sbjct: 98 LVVNKPRGQK---THPNYHGETGTLMNDVAGYLVNSENNAYMVHRIDLQTSGAVIVAKNP 154
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG---WYLCQLEV 340
I +R I + ++ + YLA+ ++ G W + + V
Sbjct: 155 IVVPILNRLISDGQIHRQYLAVVEG------------------KMAQSGKFDWAIGRNPV 196
Query: 341 M-ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+V +A Y D +R+ + K++L+TGRTHQ+R LA G PIVGD
Sbjct: 197 NPHLHQVNGQNAQPALTYY--DTLASNRERSL-VKLRLVTGRTHQLRVHLAYSGHPIVGD 253
Query: 400 SMYMPAAIAQLSSPGLNPFGKCQK 423
+Y P LS+ G+ G QK
Sbjct: 254 PLYNP-----LSTEGMLLHGVAQK 272
>gi|255994448|ref|ZP_05427583.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Eubacterium saphenum ATCC 49989]
gi|255993161|gb|EEU03250.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Eubacterium saphenum ATCC 49989]
Length = 318
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 225 ESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G +N +G +R +++D T G +++A+
Sbjct: 103 EHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEFKIRFINRLDMDTTGLLMIAK 162
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLP---VGIMTHYMRPINIAPRLVSEGWYLCQL 338
Q + +++ V+K YLA+ LP GI+ ++ + PR
Sbjct: 163 NQFIQNAVVSEMKRGNVEKRYLAVVHG-LPCNREGIIDAPIKAVEGEPRR---------- 211
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+VME K P T K + D + ++ ++L TGRTHQ+R L G PI+G
Sbjct: 212 QVMEGGK---PSITEYKVVGVSD----ELNVSF-LDVRLHTGRTHQIRVHLKHIGCPILG 263
Query: 399 DSMY 402
D Y
Sbjct: 264 DEFY 267
>gi|444322235|ref|XP_004181773.1| hypothetical protein TBLA_0G03170 [Tetrapisispora blattae CBS 6284]
gi|387514818|emb|CCH62254.1| hypothetical protein TBLA_0G03170 [Tetrapisispora blattae CBS 6284]
Length = 618
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 17/193 (8%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G V T + + LG + +++D T G + LA+T +
Sbjct: 201 LVIDKPSGIPVHPTGRFRFNTITKILEKQLGYI--VHPCNRLDRLTSGLMFLAKTPKGAD 258
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+++ ++V K Y+A P+G M ++ P++ Q E + K
Sbjct: 259 EVGDQLKTREVSKEYIARVVGEFPIGQTVVEMPVRSVQPKVSLNAVCSMQDENAKHAKTI 318
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAI 407
+ + SI C K LTGRTHQ+R L G PI D +Y I
Sbjct: 319 FTRISYDGQTSIVKC-------------KPLTGRTHQIRVHLQYLGHPIANDPLYSNVDI 365
Query: 408 --AQLSSPGLNPF 418
QL G F
Sbjct: 366 WGEQLGKGGKADF 378
>gi|333395013|ref|ZP_08476832.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 294
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 116/290 (40%), Gaps = 52/290 (17%)
Query: 155 RVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDI 214
R+FK+VT + + T Q+ R+T + + P++ + I
Sbjct: 27 RLFKQVTGQGQILINGRLAASTGVRLQQNDRVT-------------IQLPPEKAAQQIAI 73
Query: 215 DWNS-RIIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGLTTPLRTTH----- 267
+I E+ +V+DKPA +S+ G T+ + T +R G T
Sbjct: 74 STQPLNVIYADENWLVVDKPADLSSIPGPTNQTD----TLLNRVQGWLQQQNNTETVPHV 129
Query: 268 --QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
++D T G V+LAR + S+ R++ + + K Y A+ +A
Sbjct: 130 VTRLDRFTSGLVLLARHRFAHSLIARQLTDHTLDKRYYAI------------------VA 171
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
L + +L Q + ++ GK E A ++KL TGRTHQ+
Sbjct: 172 GHLTTTHGFLTQPLGRQGDEIRRRVMATGKPAKTEYWQMTKLARATLVEVKLHTGRTHQI 231
Query: 386 RAQLAACGAPIVGDSMY---MPAAIAQ--LSSPGLN---PFGKCQKEYAS 427
R A G P++GD +Y + I + L + LN PF + ++ + S
Sbjct: 232 RVHFADQGHPLLGDQLYGGPLDQGITRQALHAYELNFYDPFTQTERHFTS 281
>gi|258511286|ref|YP_003184720.1| RluA family pseudouridine synthase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478012|gb|ACV58331.1| pseudouridine synthase, RluA family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 314
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 29/186 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT---------THQIDNCTEGCVV 278
+V+DKP G V ++ T + L TPL T H+ID T G VV
Sbjct: 99 IVVDKPRGVVVHPGAGHMR---GTLVNGLLARGTPLCTLAGALRPGVVHRIDKDTSGLVV 155
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A++ R V++ Y+A+ G M H I++ + + ++
Sbjct: 156 FAKSDRAYRALVEAFRAHDVEREYVAIAH-----GRMPHREGTIDMP--IARDPADRQRM 208
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
V + K V ++++ Y+Y +++L TGRTHQ+R LAA G PI G
Sbjct: 209 AVRQGGKRAVTHFEVLESFA---------KYSY-LRLRLETGRTHQIRVHLAAIGHPIAG 258
Query: 399 DSMYMP 404
D +Y P
Sbjct: 259 DPVYGP 264
>gi|408490990|ref|YP_006867359.1| RNA pseudouridylate synthase, RluCD family [Psychroflexus torquis
ATCC 700755]
gi|408468265|gb|AFU68609.1| RNA pseudouridylate synthase, RluCD family [Psychroflexus torquis
ATCC 700755]
Length = 222
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPLPVG-IMTHYMRPINI 324
H++D T G +V A+ + F+ +KV+K YLA+ PL +T+++ N+
Sbjct: 55 HRLDRVTSGVLVFAKKKSILVGFNELFSGRKVQKTYLAIVQKKPLKSKKTLTNFLVKNNL 114
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R ++ L E ++C +Y + D ++ Y +IK TGR HQ
Sbjct: 115 EKR--ADIVSLKSKESLKC----------ILSYQVID----ENNFGYLLEIKPKTGRFHQ 158
Query: 385 VRAQLAACGAPIVGDSMY 402
+RAQLA PI+GD Y
Sbjct: 159 IRAQLAHMELPIIGDEKY 176
>gi|254392417|ref|ZP_05007599.1| ribosomal pseudouridine synthase [Streptomyces clavuligerus ATCC
27064]
gi|294811738|ref|ZP_06770381.1| Pseudouridine synthase [Streptomyces clavuligerus ATCC 27064]
gi|197706086|gb|EDY51898.1| ribosomal pseudouridine synthase [Streptomyces clavuligerus ATCC
27064]
gi|294324337|gb|EFG05980.1| Pseudouridine synthase [Streptomyces clavuligerus ATCC 27064]
Length = 309
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 27/239 (11%)
Query: 170 SSIKGKTVREAQKTFRITHVDQIVEA------GTYLRVHVHPKRFPRCYDIDWNSRIIAV 223
+I V E RI VD +V A G YL H PR + + RI+
Sbjct: 47 GAIGAARVGELFAEGRIVSVDGVVAADEPYAAGRYLWFHRDFAPEPR---VPFEIRIVHR 103
Query: 224 TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V+DKP + +I E+ LGL L+ H++D T G V+
Sbjct: 104 DARLLVVDKPHFLATTPRGSHITETAVARLRHGLGLPL-LQPAHRLDRLTAGLVLFVVRP 162
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
E + R++ V+K Y A+ V + P + R+V E V+
Sbjct: 163 EDRGAYQTLFRDRGVRKEYEAVAAYDPAVEL------PRTVRSRIVKERG------VLAA 210
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++VP + + +E G R ++ TG+THQ+R ++ G PI+ D +Y
Sbjct: 211 REVPGEPNSETRIELLEHRGGLGR-----YRLLPATGQTHQLRVHMSGLGLPILHDPVY 264
>gi|291299500|ref|YP_003510778.1| pseudouridine synthase [Stackebrandtia nassauensis DSM 44728]
gi|290568720|gb|ADD41685.1| pseudouridine synthase [Stackebrandtia nassauensis DSM 44728]
Length = 254
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 215 DWNSRI----IAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
DW S + + + + L+KP G SV G + + A A+ A P+ H+ID
Sbjct: 5 DWKSIVDKYALVDNDQVLALNKPTGISVMGERHDTD--VARLAAEAGDKLHPV---HRID 59
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-----------PLPVGIMTHYM 319
T G V+ AR + + R+ ++ V K YLA+ + PL VG
Sbjct: 60 KATSGLVLFARDLKCHGVLTRQFNKRTVDKTYLAVVNSAEVPAAARIDLPLSVG---RKN 116
Query: 320 RPINIAPR--LVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI 375
R APR + + G W + + +V K +P T Y D W + D +
Sbjct: 117 RVRVAAPREAITNTGTDWTVPETDVFTHVKT-YPSVT---EY---DTLW-TGDGLSLLAV 168
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ ++GR HQ+R LA G I GDS+Y
Sbjct: 169 RPISGRRHQIRVHLAWTGFAITGDSLY 195
>gi|223986739|ref|ZP_03636725.1| hypothetical protein HOLDEFILI_04048 [Holdemania filiformis DSM
12042]
gi|223961305|gb|EEF65831.1| hypothetical protein HOLDEFILI_04048 [Holdemania filiformis DSM
12042]
Length = 295
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 39/203 (19%)
Query: 219 RIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
RI+ E + + KPAG V G T + + A + R G +R H++D T
Sbjct: 85 RILYEDELILAVSKPAGMIVHPDNKGKTGTLANAVAAYYLRT-GQHCTVRPIHRLDEGTS 143
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL----------PVGIMTHYMRPINI 324
G V+ ++ + + + +K++ + YLA+ + + P+G H + I
Sbjct: 144 GIVLFSKCPFFQPKLDQALAQKQIARTYLAVVSGVMKPKDRLTLDKPIGRDRHNAKAYRI 203
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
+P + + +EV+ C++ ++ + +L TGRTHQ
Sbjct: 204 SP---TGKPAVTHVEVLRCRQ---------------------KEKQTLVRCQLETGRTHQ 239
Query: 385 VRAQLAACGAPIVGDSMYMPAAI 407
+R LA+ P+V D +Y P +
Sbjct: 240 IRVHLASIQRPVVNDPLYNPRPV 262
>gi|419808462|ref|ZP_14333366.1| Ribosomal large subunit pseudouridine synthase D [Mycoplasma
agalactiae 14628]
gi|390605865|gb|EIN15238.1| Ribosomal large subunit pseudouridine synthase D [Mycoplasma
agalactiae 14628]
Length = 305
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNCTEGCVVLA 280
++L+KP+G V G D + + L T L H+ID T G +++A
Sbjct: 86 LILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDTNGLLRLGIVHRIDKDTSGLLIIA 145
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ E + + ++ ++K+ YLA+ GI+ + + IN+ + ++ L +
Sbjct: 146 KDNETHNELAKMLKNHQIKRTYLAICE-----GILPNKVTKINLPIQRDTKNRKLMSIHK 200
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
V + + K++ I++ + K +L TGRTHQ+R LA P+ GDS
Sbjct: 201 DGKSSVTY--VHMLKSFYIDNKPYSL------VKCELETGRTHQIRVHLAYIKHPVYGDS 252
Query: 401 MY 402
+Y
Sbjct: 253 IY 254
>gi|365969978|ref|YP_004951539.1| ribosomal large subunit pseudouridine synthase C [Enterobacter
cloacae EcWSU1]
gi|365748891|gb|AEW73118.1| Ribosomal large subunit pseudouridine synthase C [Enterobacter
cloacae EcWSU1]
Length = 315
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
PR + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PRLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G +++A+ + H ++REK ++K YLAL + H+ +
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL--------VRGHWQSHVKA 190
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRT 382
+ + ++ + P T + +E+ YA+ ++ +TGRT
Sbjct: 191 VQAPLLKNILQSGERIVRVNQEGKPSET---RFKVEE------RYAFATLVRCSPVTGRT 241
Query: 383 HQVRAQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
HQ+R G PI D Y QL+ GL+
Sbjct: 242 HQIRVHTQYAGHPIAFDDRYGDREFDKQLAGTGLS 276
>gi|239637869|ref|ZP_04678830.1| ribosomal large subunit pseudouridine synthase, RluD family
[Staphylococcus warneri L37603]
gi|239596432|gb|EEQ78968.1| ribosomal large subunit pseudouridine synthase, RluD family
[Staphylococcus warneri L37603]
Length = 276
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E + ++Y A A LP+ +P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENDITRIYKAHVKALLPI-------KPQTIDK 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + + T +A + ++ E +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHPNKKRI---------SNTGQRAITHILSSNMVKENVCELEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|146328747|ref|YP_001209889.1| ribosomal large subunit pseudouridine synthase, RluC [Dichelobacter
nodosus VCS1703A]
gi|146232217|gb|ABQ13195.1| ribosomal large subunit pseudouridine synthase, RluC [Dichelobacter
nodosus VCS1703A]
Length = 313
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 214 IDWNSRIIAVT----ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
I W RI A + ++L+KPAG V G + + E R++ H++
Sbjct: 84 IYWQKRIEAAVLYEDDHFLILNKPAGIVVHGGSGH--EFGVIDVVRSIWGENYAELAHRL 141
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI----A 325
D T G +VL + ++ + F + E V+K Y AL G+ T + + A
Sbjct: 142 DGDTSGVLVLGKHRQALNAFQTAMNEGTVEKRYWALVD-----GVWTREEAEVVVHLTKA 196
Query: 326 PRLVSEGWYLCQLEVMECKKV------PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
P V E + +LE + + W DAT+ +A L T
Sbjct: 197 PLNVREKMQVSELENAQFARTWFYVLQRWQDATLMEAV-------------------LDT 237
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R A C I GD Y
Sbjct: 238 GRTHQIRVSAAHCQHAIAGDKKY 260
>gi|373253159|ref|ZP_09541277.1| ribosomal large subunit pseudouridine synthase D [Nesterenkonia sp.
F]
Length = 293
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 95/243 (39%), Gaps = 39/243 (16%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVLDKPAG------- 235
R+ + + AGT L V R P ++ N RI+ + VV+DKP G
Sbjct: 32 RVVKKSEKLTAGTELDVDPPAARDPLEVRVEPVENLRILHQDDDIVVVDKPVGVAAHPSP 91
Query: 236 -----TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFH 290
T +GG + A G+ H++D T G +V+A+ ++ S+
Sbjct: 92 GWTGPTVIGGLLAAGVPISTSGAQERRGIV------HRLDVGTSGVMVVAKNEQAYSVLK 145
Query: 291 RKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPD 350
R + K+Y AL LP I PI P W +E + +
Sbjct: 146 DAFRRRTPTKIYRALVQG-LPDPIDGTIDAPIGRHP---GHEWRFAVVEDGRASRTHY-- 199
Query: 351 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYM--PAAIA 408
T+ +AY A +++L TGRTHQ+R +A G P GD Y P A
Sbjct: 200 -TLLEAYG----------RASLMRVQLETGRTHQIRVHFSALGHPCAGDLTYGADPGLAA 248
Query: 409 QLS 411
+L
Sbjct: 249 ELG 251
>gi|89901092|ref|YP_523563.1| pseudouridine synthase RluD [Rhodoferax ferrireducens T118]
gi|89345829|gb|ABD70032.1| ribosomal large subunit pseudouridine synthase D [Rhodoferax
ferrireducens T118]
Length = 334
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 17/196 (8%)
Query: 225 ESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
E +V++KPAG V G + + ++A+ L H++D T G +V+A
Sbjct: 113 EHLMVINKPAGLVVHPAPGNWSGTLLNGLLARDAKAMNLPRA-GIVHRLDKDTSGLMVVA 171
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
RT+ R I ++V + Y+AL P PI PR ++ V
Sbjct: 172 RTRPVMDALIRSIAAREVSRQYVALAHGPWTGNRRVEINAPIGRDPR------NRLRMAV 225
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
++ + P A +++C D L TGRTHQ+R +A G P+V D
Sbjct: 226 VDLARNPGKLART-DVELLQNC-----DQGCWVLCTLHTGRTHQIRVHMAMIGHPLVADV 279
Query: 401 MYMPAAIAQLSSPGLN 416
+Y A A + L+
Sbjct: 280 LYGGRAEAGMQRQALH 295
>gi|398339707|ref|ZP_10524410.1| pseudouridylate synthase [Leptospira kirschneri serovar Bim str.
1051]
Length = 240
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N RI +ES ++ +KP G V T D+ E+ + L L LRT +++D T G
Sbjct: 6 NIRIFYESESFLLAEKPPGIPVHATKDSKRENFTDQLQKQLSLEY-LRTVNRLDLDTSGL 64
Query: 277 VVL----ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVS 330
V + +E I + K+YL +T+ +P T Y++ N R V
Sbjct: 65 VFFCKNPNKNKEADQILKNSL------KIYLCVTSGVIPEKHFTETCYIKDGNKKVRKVF 118
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G E + K+ + +V A KL TG+ HQ+R L+
Sbjct: 119 SGGDKAVTEFLTLKQNSKENYSVLLA-------------------KLHTGKRHQIRFHLS 159
Query: 391 ACGAPIVGDSMYMPAAIAQL 410
G PI+GD +Y ++L
Sbjct: 160 EKGYPILGDCVYGKNNKSKL 179
>gi|397691945|ref|YP_006529826.1| putative pseudouridine synthase [Candidatus Mycoplasma haemolamae
str. Purdue]
gi|397328675|gb|AFO51681.1| putative pseudouridine synthase [Candidatus Mycoplasma haemolamae
str. Purdue]
Length = 327
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 117/312 (37%), Gaps = 74/312 (23%)
Query: 116 ICRELNLPPL-------FVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSK 168
I +EL L + F + G Y LV P+ + +R FK T S L K
Sbjct: 35 IIKELRLKKILVNGQSSFFQYKLQLGDKIYILVLPEK------DSLRPFKSTT--SYLEK 86
Query: 169 RSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV 228
R + KG +V+ DQI+ +L +
Sbjct: 87 RQNFKGVSVK-----------DQIIFENQHL----------------------------L 107
Query: 229 VLDKPAGTSVGG----TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+++K G V ++ ++EE + + GL + H++D G ++ A++ +
Sbjct: 108 IVNKKEGQIVQADPSSSSPSLEEIVQSNYKTSEGLEYLPKFVHRLDRPVRGLLLAAKSAK 167
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
++ +R +KK+Y AL + E W L + + +
Sbjct: 168 AHNLLSEALRNHSLKKVYRALVIGKWDSKVQE-------------LEHWILDKGKRVTVY 214
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
+ PD+ K + + Y +I+L+TGR +Q+RAQL G PI+GD Y
Sbjct: 215 QKTVPDSKYSKLLVKRLKVFSNSSY---LEIELITGRKNQIRAQLGWAGHPILGDRKYYS 271
Query: 405 AAIAQLSSPGLN 416
I + LN
Sbjct: 272 KEIKKNFKEELN 283
>gi|419720732|ref|ZP_14247947.1| pseudouridine synthase, RluA family [Lachnoanaerobaculum saburreum
F0468]
gi|383303085|gb|EIC94555.1| pseudouridine synthase, RluA family [Lachnoanaerobaculum saburreum
F0468]
Length = 338
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAG-----TSVGG-TTDNIEESCATFASRALGLTTPLRTTHQI 269
+ S II E+ V+++KPAG + + + +++ F L P +++
Sbjct: 94 FKSYIIYEDENTVIVNKPAGLLSQKSQINDISVNDMLLEYLKFDENTLHTFKP-SICNRL 152
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +V ++ E + + I+ + VKK YLA+ + + V
Sbjct: 153 DRNTSGLLVCGKSLEGLRVNNELIKTRAVKKYYLAIVKGR--------------VNEKCV 198
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWP--SRDYAYECKIKLLTGRTHQVRA 387
GW L + E + KV + KA IE P D +KL+TG+THQ+RA
Sbjct: 199 ISGW-LYKDE--KTNKVSIKNNKFDKADYIETEYKPIGYFDDITLLSVKLITGKTHQIRA 255
Query: 388 QLAACGAPIVGDSMYMPAAIAQL 410
LA+ PI+GD Y ++ +
Sbjct: 256 HLASMAHPIIGDFKYGKRSVNEF 278
>gi|377559146|ref|ZP_09788707.1| putative pseudouridine synthase [Gordonia otitidis NBRC 100426]
gi|377523694|dbj|GAB33872.1| putative pseudouridine synthase [Gordonia otitidis NBRC 100426]
Length = 294
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
P +I ++ I+ V ++ VV+DKP + ++ ++ RALG L H
Sbjct: 67 LPDEIEIPFDLPILYVDDNIVVVDKPPFLATMPRGRHVTQTALVRLRRALG-NDALAPAH 125
Query: 268 QIDNCTEGCVVL-ARTQ---EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
++D T G ++ R Q Y +F R++ V+K Y A+ APL + + T P+
Sbjct: 126 RLDRLTSGVLLFTVRPQVRAAYQDLFARRL----VRKEYRAV--APLDLALRT----PVT 175
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
+ R+ L L V D V IE D +++ TGRTH
Sbjct: 176 VRNRIEKTAGDLRALVV---------DGDVNAVSDIELLDELG-DEVGLYRLRPQTGRTH 225
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R +A G PIV D +Y
Sbjct: 226 QLRLHMALLGVPIVDDPLY 244
>gi|418575728|ref|ZP_13139876.1| putative pseudouridylate synthase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325763|gb|EHY92893.1| putative pseudouridylate synthase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 275
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E ++ ++Y A + LP+ +P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENEIDRIYKANVHSLLPI-------KPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K + C E +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSSTGQSAITHILNSKMIKEDVC---------ELEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + +L
Sbjct: 226 VHLAEIGHPVIGDPLYGNSTLRKLE 250
>gi|337278837|ref|YP_004618308.1| uracil hydrolyase [Ramlibacter tataouinensis TTB310]
gi|334729913|gb|AEG92289.1| Uracil hydrolyase [Ramlibacter tataouinensis TTB310]
Length = 212
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 34/193 (17%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKPAG ++ C A+R R H++D T G ++AR
Sbjct: 10 IVVDKPAGLLCVPGRGPGKQEC--LAARVQQRFPDARVVHRLDMATSGLWLMARGAALQR 67
Query: 288 IFHRKIREKKVKKLYLALTTA---PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
F ++V K Y+A+ P+P +EGW L +
Sbjct: 68 AFGDAFARREVGKRYVAVVAGLLLPMPAD----------------AEGWSRIALPL---- 107
Query: 345 KVPWP-------DATVGKAYSI--EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
WP D GK G + + ++ +TGRTHQ+R L A G P
Sbjct: 108 AADWPNRPRQQVDPHAGKPSLTLWRVLGHDAAAGSTRLELAPVTGRTHQLRVHLMALGHP 167
Query: 396 IVGDSMYMPAAIA 408
I+GD++Y P +A
Sbjct: 168 ILGDALYAPPEVA 180
>gi|244539183|dbj|BAH83226.1| 23S rRNA pseudouridylate synthase [Candidatus Ishikawaella
capsulata Mpkobe]
Length = 317
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFAS----RALGLTTPL 263
P +I + I ++H+ +L+KP+G +V G S +F R L + L
Sbjct: 83 PNRKEISILEKAILFEDNHILILNKPSGIAVHGG------SGLSFGVIEGLRLLRPNSHL 136
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
H++D T G ++LA+ + H ++R K+V+K YLAL P
Sbjct: 137 ELVHRLDRDTSGLLLLAQKRSALRSLHEQLRTKEVRKEYLALVQGKWPPN--------CK 188
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA----YSIEDCGWPSRDYAYECKIKLLT 379
IA + + + Q ++ C + GKA +S+E+ + A K++ +T
Sbjct: 189 IATLPILKKYSNNQDNIV-CIDIH------GKASETHFSVEEYF----NDATLLKVRPIT 237
Query: 380 GRTHQVRAQLAACGAPIVGDSMY-MPAAIAQLSSPGLN 416
GRTHQ+R + G PI D+ Y + ++ GLN
Sbjct: 238 GRTHQIRIHTSYLGHPIAFDNRYGLSNFDKKIIKTGLN 275
>gi|416249666|ref|ZP_11636763.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis CO72]
gi|326575838|gb|EGE25761.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis CO72]
Length = 355
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGL 259
H + P DID II E+ ++++KPAG V G T + + + L
Sbjct: 110 HSEDLPENIDID----IIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHL 165
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H+ID T G +V+ART+ ++++K V + Y + +G + +
Sbjct: 166 PRA-GLVHRIDKDTTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIA-----LGAVHEVL 219
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I + G + M K+ P T I + + Y+ I L T
Sbjct: 220 RHAQIDAPI---GRHSTHRTKMAVKQTGKPALT-----HIVNAKYLHERYSL-LDIHLKT 270
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSS 412
GRTHQ+R L+ G P+VGD +Y + A LS
Sbjct: 271 GRTHQIRVHLSYVGHPLVGDPVYGTSPRAGLSD 303
>gi|421863332|ref|ZP_16295030.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379094|emb|CBX22225.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 330
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 78/197 (39%), Gaps = 20/197 (10%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +DI + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 REFDIVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP N RL
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---------DDNFHVRLP 195
Query: 330 SEGWYLCQLEVM-ECKKVPWPDATVGKAYSIEDCG---WPSRDYAYECKIKLLTGRTHQV 385
+ Q E M TV + S G + + L TGRTHQ+
Sbjct: 196 LFKYTGAQGEKMVRVSGDGQAAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQI 255
Query: 386 RAQLAACGAPIVGDSMY 402
R L + G PI GD Y
Sbjct: 256 RVHLQSQGCPIAGDERY 272
>gi|410632029|ref|ZP_11342700.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
gi|410148565|dbj|GAC19567.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
Length = 317
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 83/209 (39%), Gaps = 60/209 (28%)
Query: 211 CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRT 265
Y+ DW +VL+KP+GT+V G S +F A RAL L
Sbjct: 96 LYEDDW----------LIVLNKPSGTAVHGG------SGLSFGVIEALRALRPQQKFLEL 139
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T GC+++A+ + H ++R++KV K Y A
Sbjct: 140 VHRLDRDTSGCLLIAKKRSALKNLHEQLRDRKVDKRYQA--------------------- 178
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSI---EDCGWPSR---------DYAYEC 373
LV+ W + +V K P T+ I +D G PS + A
Sbjct: 179 --LVAGEWPANRFKV----KAPLLKNTLKSGERIVLVDDEGKPSETRYRILESFNQATLV 232
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ +TGRTHQ+R G PI D+ Y
Sbjct: 233 EASPITGRTHQIRVHCLHAGHPIAADNRY 261
>gi|336304154|gb|AEI47256.1| pseudouridine synthase [Runella slithyformis DSM 19594]
Length = 242
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L T H+ID G VV ART + + R++ V+K Y A+ RP
Sbjct: 55 LGTVHRIDRPVSGLVVFARTSKALERMNEIFRKRDVQKTYWAVVR-----------RRPP 103
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA-YSIEDCGWPSRDYAYECKIKLLTGR 381
+LVS W + +P A KA + G ++ Y E + LTGR
Sbjct: 104 KKQDKLVS--WIVKDDNKNVVTAYDYPAANAQKAELTYRLLGEINKHYLLE--VSPLTGR 159
Query: 382 THQVRAQLAACGAPIVGDSMY 402
HQ+R QLA G PI GD Y
Sbjct: 160 PHQIRVQLAQIGCPIRGDVKY 180
>gi|225872530|ref|YP_002753985.1| RluA family pseudouridine synthase [Acidobacterium capsulatum ATCC
51196]
gi|225792126|gb|ACO32216.1| pseudouridine synthase, RluA family [Acidobacterium capsulatum ATCC
51196]
Length = 301
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 36/197 (18%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ ++KP+G + +E + R +P+ H++ T G V+ ++T + +
Sbjct: 91 IAVNKPSGLPTLPGSGFLENTLLRLVRRYAPHASPV---HRLGRATSGIVLFSKTAQGAA 147
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
+ KV+K+Y A+ V + H I+ +VP
Sbjct: 148 LLEAIWNTSKVQKVYRAVA-----VNVAEHEEYEIH-----------------TPIGRVP 185
Query: 348 WPDATVGKAYSIEDCGWPSRDYA---------YECKIKLLTGRTHQVRAQLAACGAPIVG 398
P +G ++ G PS A ++ L +GR HQ+R LA+ G P+VG
Sbjct: 186 HPR--LGSVWAASSTGKPSWSSAKVLARGTTTTTFEVTLHSGRPHQIRIHLASVGHPLVG 243
Query: 399 DSMYMPAAIAQLSSPGL 415
D +Y P + PGL
Sbjct: 244 DGLYGPGGLPLADHPGL 260
>gi|193222440|emb|CAL63390.2| Putative pseudouridylate synthase 23S RNA-specific [Herminiimonas
arsenicoxydans]
Length = 300
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 28/222 (12%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+ P I ++ ++ + V +DKP V ++E+ R+L + T L
Sbjct: 77 RSLPEEARIPFDEVVLYQDDYLVAVDKPHFLPVTPAGRYLQETLLVRLKRSLNIDT-LAP 135
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H+ID T G V+ +++ RE+ V K Y A+ + + T Y
Sbjct: 136 MHRIDRDTAGLVLFTIQPHTRNLYQTLFRERSVSKQYEAIAPYRADLALPTVYRS----- 190
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
RL+ ++ ++ E + VP + + +E G +R +++ ++G+ HQ+
Sbjct: 191 -RLLESAAFM---KMEEVEGVPNAETAID---LMEVQGALAR-----YRLEPVSGQKHQL 238
Query: 386 RAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYAS 427
RA +AA G PIV D +Y P L P +++Y+
Sbjct: 239 RAHMAALGMPIVNDRIY----------PELYPDEGAEQDYSQ 270
>gi|12045231|ref|NP_073042.1| RluA family pseudouridine synthase [Mycoplasma genitalium G37]
gi|1351560|sp|P47610.1|Y370_MYCGE RecName: Full=Uncharacterized RNA pseudouridine synthase MG370;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|3844958|gb|AAC71597.1| pseudouridine synthase, RluA family [Mycoplasma genitalium G37]
gi|166078817|gb|ABY79435.1| pseudouridine synthase, RluA family [synthetic Mycoplasma
genitalium JCVI-1.0]
Length = 323
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGT--------SVGGTTDNIEESCA--TFASRALGLTTPLRTTHQ 268
+II E+ +V+DKP G S+ ++ + + C F S L H+
Sbjct: 89 KIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF--AHR 146
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPR 327
ID T G V+ A+T + ++ + + K Y L +G+ T Y + N
Sbjct: 147 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHLGLQTAYWKKDN---- 202
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ G ++ K P+P+A + E+ + ++ I+L++GRTHQ+RA
Sbjct: 203 --NNG-------IVTVKWKPFPEAKKISTF-FENSSYIAQKDMSLITIRLISGRTHQIRA 252
Query: 388 QLAACGAPIVGDSMY 402
L +VGD Y
Sbjct: 253 CLNLFSNQLVGDKKY 267
>gi|392972476|ref|ZP_10337867.1| putative pseudouridylate synthase [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046187|ref|ZP_10901660.1| pseudouridylate synthase [Staphylococcus sp. OJ82]
gi|392509522|emb|CCI61174.1| putative pseudouridylate synthase [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763896|gb|EJX17985.1| pseudouridylate synthase [Staphylococcus sp. OJ82]
Length = 275
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E ++ ++Y A + LP+ +P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENEIDRIYKANVHSLLPI-------KPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K ED E +KL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQTAITHIINSKMIK-EDVS--------EVDLKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGNSTLRQLQ 250
>gi|303249294|ref|ZP_07335526.1| pseudouridine synthase, RluA family [Desulfovibrio fructosovorans
JJ]
gi|302489300|gb|EFL49257.1| pseudouridine synthase, RluA family [Desulfovibrio fructosovorans
JJ]
Length = 323
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 22/197 (11%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT-- 266
PR +D+D I+ + +V+ KPAG V + + T RA P R T
Sbjct: 84 PRGHDLD----ILHEDDEILVIVKPAGLPVHPGSGH--PFALTSILRARYPDAPFRPTPA 137
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A++ H + K YLA +G + + +
Sbjct: 138 HRLDRDTTGVLLVAKSYRALRAIHEAMTTGTAHKDYLAWVWGEWTLGEANDW---VTLRD 194
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAY-SIEDCGWPSRDYAYECKIKLLTGRTHQV 385
RL EG E +E P A A + G D A +++L TGRT Q+
Sbjct: 195 RLAKEGG--PGRERVE------PSAGGKDAVCKVRLLG--VMDTASLVEVRLETGRTQQI 244
Query: 386 RAQLAACGAPIVGDSMY 402
RAQLA+ GAPIVGD Y
Sbjct: 245 RAQLASRGAPIVGDPKY 261
>gi|299473311|emb|CBN77710.1| pseudouridylate synthases, 23S RNA-specific [Ectocarpus
siliculosus]
Length = 256
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 26/188 (13%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRT-THQIDNCTEGCV 277
I+ V E VV +KP+ V G + ++S AT A+ LG R H++D T GCV
Sbjct: 52 ILFVDEEIVVCNKPSDLLCVPGRIE--KDSLATRAALELGHYRVDRMIVHRLDMATSGCV 109
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
++ART +R+ RE++V+K Y+A+ G++ +++ LC+
Sbjct: 110 IMARTDAALKDLNRQFRERQVRKRYVAIVH-----GVLWADEGEVDLP---------LCR 155
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLL--TGRTHQVRAQLAACGA 394
C + + GK + W D A + +++L+ +GR+HQ+R + A G
Sbjct: 156 NR--GCPPLHMVNFEHGKPSLTK---WRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGH 210
Query: 395 PIVGDSMY 402
PI+GD Y
Sbjct: 211 PILGDHFY 218
>gi|259503014|ref|ZP_05745916.1| ribosomal large subunit pseudouridine synthase [Lactobacillus antri
DSM 16041]
gi|259169025|gb|EEW53520.1| ribosomal large subunit pseudouridine synthase [Lactobacillus antri
DSM 16041]
Length = 297
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 34/194 (17%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRAL---GLTTPLRTTH---QIDNCTEGCVVLA 280
+VL+KPAG +V + +S R G R TH ++D T G VV
Sbjct: 88 LVLNKPAGVATVPAHNVPVADSLVNRVKRYYREQGYEN--RVTHVATRLDKDTSGLVVFP 145
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR-PINIAPRLVSEGWYLCQLE 339
+ + ++ R+++ VKK Y AL L G Y+ PI P
Sbjct: 146 KHRFAHAVLDRQLKHHAVKKNYYALVNGRL--GSQHVYIDAPIRRDPDSF---------- 193
Query: 340 VMECKKVPWPDA--TVGKAYSIEDCG-WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
K+V PD +V + + C W +I+L TGRTHQ+R + G P+
Sbjct: 194 ---VKRVVAPDGKPSVTEYWLERSCTEWSL------VRIRLHTGRTHQIRVHFSFLGHPL 244
Query: 397 VGDSMYMPAAIAQL 410
VGD MY PAA + L
Sbjct: 245 VGDRMYGPAAGSSL 258
>gi|134096436|ref|YP_001101511.1| pseudouridylate synthase [Herminiimonas arsenicoxydans]
Length = 281
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 28/222 (12%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+ P I ++ ++ + V +DKP V ++E+ R+L + T L
Sbjct: 58 RSLPEEARIPFDEVVLYQDDYLVAVDKPHFLPVTPAGRYLQETLLVRLKRSLNIDT-LAP 116
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H+ID T G V+ +++ RE+ V K Y A+ + + T Y
Sbjct: 117 MHRIDRDTAGLVLFTIQPHTRNLYQTLFRERSVSKQYEAIAPYRADLALPTVYRS----- 171
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
RL+ ++ ++ E + VP + + +E G +R +++ ++G+ HQ+
Sbjct: 172 -RLLESAAFM---KMEEVEGVPNAETAID---LMEVQGALAR-----YRLEPVSGQKHQL 219
Query: 386 RAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYAS 427
RA +AA G PIV D +Y P L P +++Y+
Sbjct: 220 RAHMAALGMPIVNDRIY----------PELYPDEGAEQDYSQ 251
>gi|433535853|ref|ZP_20492372.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
77221]
gi|432276274|gb|ELL31332.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
77221]
Length = 330
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +DI + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 REFDIVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H IR KK+YLAL LP ++ + +
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP---DDNFHVKLPLFKYTG 201
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
++G + + V E + V +S + + L TGRTHQ+R L
Sbjct: 202 AQGEKMVR--VSEDGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHL 259
Query: 390 AACGAPIVGDSMY 402
+ G PI GD Y
Sbjct: 260 QSQGCPIAGDERY 272
>gi|326440515|ref|ZP_08215249.1| putative ribosomal pseudouridine synthase [Streptomyces
clavuligerus ATCC 27064]
Length = 273
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 27/239 (11%)
Query: 170 SSIKGKTVREAQKTFRITHVDQIVEA------GTYLRVHVHPKRFPRCYDIDWNSRIIAV 223
+I V E RI VD +V A G YL H PR + + RI+
Sbjct: 11 GAIGAARVGELFAEGRIVSVDGVVAADEPYAAGRYLWFHRDFAPEPR---VPFEIRIVHR 67
Query: 224 TESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V+DKP + +I E+ LGL L+ H++D T G V+
Sbjct: 68 DARLLVVDKPHFLATTPRGSHITETAVARLRHGLGLPL-LQPAHRLDRLTAGLVLFVVRP 126
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
E + R++ V+K Y A+ V + P + R+V E V+
Sbjct: 127 EDRGAYQTLFRDRGVRKEYEAVAAYDPAVEL------PRTVRSRIVKERG------VLAA 174
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
++VP + + +E G R ++ TG+THQ+R ++ G PI+ D +Y
Sbjct: 175 REVPGEPNSETRIELLEHRGGLGR-----YRLLPATGQTHQLRVHMSGLGLPILHDPVY 228
>gi|402551201|ref|YP_006599921.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2321]
gi|401799896|gb|AFQ03213.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2321]
Length = 330
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGT--------SVGGTTDNIEESCA--TFASRALGLTTPLRTTHQ 268
+II E+ +V+DKP G S+ ++ + + C F S L H+
Sbjct: 96 KIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF--AHR 153
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPR 327
ID T G V+ A+T + ++ + + K Y L +G+ T Y + N
Sbjct: 154 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHLGLQTAYWKKDN---- 209
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ G ++ K P+P+A + E+ + ++ I+L++GRTHQ+RA
Sbjct: 210 --NNG-------IVTVKWKPFPEAKKISTF-FENSSYIAQKDMSLITIRLISGRTHQIRA 259
Query: 388 QLAACGAPIVGDSMY 402
L +VGD Y
Sbjct: 260 CLNLFSNQLVGDKKY 274
>gi|429200644|ref|ZP_19192320.1| RNA pseudouridine synthase [Streptomyces ipomoeae 91-03]
gi|428663626|gb|EKX62973.1| RNA pseudouridine synthase [Streptomyces ipomoeae 91-03]
Length = 347
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 18/197 (9%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+ P + + ++ E VV DKP + ++ E+ R LG+ L
Sbjct: 116 RELPEEERVPFTVDVVYRDEHVVVADKPHFLATTPRGSHVAETALARLRRQLGIPA-LSA 174
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G V+ E + R+++V K Y A+ AP + P +
Sbjct: 175 AHRLDRLTAGLVLFTVRPEERGAYQSLFRDRRVAKEYEAV--APYDPALAL----PRTVR 228
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQV 385
R+V E VM ++V V + +E R+ ++ TG+THQ+
Sbjct: 229 SRIVKERG------VMAAREVEGEPNAVSRVELLE-----HRNGRARYRLIPRTGQTHQL 277
Query: 386 RAQLAACGAPIVGDSMY 402
R ++A G PI+GD +Y
Sbjct: 278 RVHMSALGVPILGDPLY 294
>gi|402552699|ref|YP_006601416.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2288]
gi|401801394|gb|AFQ04708.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2288]
Length = 330
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGT--------SVGGTTDNIEESCA--TFASRALGLTTPLRTTHQ 268
+II E+ +V+DKP G S+ ++ + + C F S L H+
Sbjct: 96 KIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF--AHR 153
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPR 327
ID T G V+ A+T + ++ + + K Y L +G+ T Y + N
Sbjct: 154 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHLGLQTAYWKKDN---- 209
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ G ++ K P+P+A + E+ + ++ I+L++GRTHQ+RA
Sbjct: 210 --NNG-------IVTVKWKPFPEAKKISTF-FENSSYIAQKDMSLITIRLISGRTHQIRA 259
Query: 388 QLAACGAPIVGDSMY 402
L +VGD Y
Sbjct: 260 CLNLFSNQLVGDKKY 274
>gi|422857445|ref|ZP_16904095.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK1057]
gi|327463496|gb|EGF09815.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK1057]
Length = 299
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + IE + S +G T H++D T G V+ A+
Sbjct: 99 IIVNKPEGMKTHAN-EPIELALLNHVSAYVGETC--YVVHRLDKETSGAVLFAKNPFVLP 155
Query: 288 IFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + ++++ + Y AL P +G H R + PR +G Y +
Sbjct: 156 ILNRLLEKREISREYWALIQGKFPSKKLIYKDKIGRDRHDRRKRLVDPR---KGLY-AET 211
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
V K+ +G+A + +C++K TGRTHQ+R LA G P++G
Sbjct: 212 HVTRLKQ-------LGQAALV------------KCQLK--TGRTHQIRVHLAHHGHPLIG 250
Query: 399 DSMYMPAAIAQL 410
D +Y P +L
Sbjct: 251 DPLYHPQPKGRL 262
>gi|223992757|ref|XP_002286062.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977377|gb|EED95703.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 246
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 34/195 (17%)
Query: 219 RIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R++ + VV+DKPA SV G N ++ S+ L H++D T G +
Sbjct: 22 RVLYSDDDIVVIDKPANLRSVPGHASNSPDADDGSKSKY-----QLHVVHRLDCQTSGIM 76
Query: 278 VLARTQEYCSIFHRKIREKK-VKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+AR S RE+ V+K YLA P +SEG
Sbjct: 77 VVARNSTAASKLCHAWRERDIVQKTYLAYCQRWPPY------------HDEQLSEGTIDL 124
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWP---------SRDYAYECKIKLLTGRTHQVRA 387
L +++ W + ++ED G P D ++K +TGRTHQ+R
Sbjct: 125 PLAASRTERIKW------EVRALEDGGKPLKSELTVERDNDNGVVLELKPITGRTHQLRI 178
Query: 388 QLAACGAPIVGDSMY 402
A G+ IVGDS+Y
Sbjct: 179 HCATIGSGIVGDSLY 193
>gi|319763272|ref|YP_004127209.1| pseudouridine synthase [Alicycliphilus denitrificans BC]
gi|317117833|gb|ADV00322.1| pseudouridine synthase [Alicycliphilus denitrificans BC]
Length = 316
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+I + ++ E +V DKP V ++ + R LGL L H+ID
Sbjct: 87 EIPFQETVLYQDEHILVADKPHFLPVVPAGRYLQHTLLVRLKRRLGLRE-LSPVHRIDRD 145
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G V+ + + + R+++V+K+Y A+ AP + P A RL G
Sbjct: 146 TAGLVLFSVQRATRGRYQALFRDRQVRKVYEAV--APWRADLRF----PRTHASRLQESG 199
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ EV P+A + + GW +++ +TG+ HQ+R +AA
Sbjct: 200 HFFRMHEVPGE-----PNAVTTMDVAEQAGGWA------RYRLEPVTGKRHQLRVHMAAL 248
Query: 393 GAPIVGDSMY 402
G P+ GD Y
Sbjct: 249 GLPLCGDGFY 258
>gi|307719808|ref|YP_003875340.1| pseudouridine synthase [Spirochaeta thermophila DSM 6192]
gi|306533533|gb|ADN03067.1| pseudouridine synthase [Spirochaeta thermophila DSM 6192]
Length = 256
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 26/191 (13%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP--LRTTHQIDNCTE 274
++ IIAV ++ L + G ++ES G P L +++D T
Sbjct: 7 DAHIIAVNKTGEELVQQNSVMEG----TLQESLLEHLRMRDGAEAPPRLHLVNRLDRPTS 62
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP--LPVGIMTHYMRPINIAPRLVSEG 332
G V+ AR ++ F R + V KLY A+ AP LP + HY+ + R +++
Sbjct: 63 GIVLFARHRKAAGKFSHLFRRRGVYKLYWAVLDAPPPLPSDTVEHYI----VENRRINKS 118
Query: 333 WYLCQL-EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ + E E ++ +Y + G D + ++L TGR HQ+RAQ +A
Sbjct: 119 FAFAEKKEGSEYARL---------SYQVIGSG----DRYFFVVVRLHTGRHHQIRAQFSA 165
Query: 392 CGAPIVGDSMY 402
G I GD Y
Sbjct: 166 LGCHIKGDIKY 176
>gi|88607689|ref|YP_505141.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
phagocytophilum HZ]
gi|88598752|gb|ABD44222.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
phagocytophilum HZ]
Length = 297
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 37/242 (15%)
Query: 183 TFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
T I +VD+I + VH R + II E+ + ++KPAG +V G T
Sbjct: 46 TVSIRNVDKIASRSKEAK-EVHDDALLRLV----SDNIIYKDENIIAINKPAGVNVQGGT 100
Query: 243 DNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
+ S L P L H++D T G +++AR Q I ++R ++V+
Sbjct: 101 -----KVSISLSDLLNKIIPGEQLHIVHRLDRDTSGVLIIARGQSIARILSEELRFRRVR 155
Query: 300 KLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATV--GKAY 357
K Y+A+T +P PI CKK T+ +A
Sbjct: 156 KEYIAVTKG-VPAFSKGEITMPIY-------------------CKKQSGVGETLIPKEAK 195
Query: 358 SIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY-MPAAIAQLSSPGLN 416
++ S+ +A + +TGR HQ+R L+ PI+GD+ Y + Q +S L+
Sbjct: 196 TVFSVLQSSKRHAVML-LSPVTGRKHQLRIHLSQFCCPIIGDTKYSKDTEVQQHNSLHLH 254
Query: 417 PF 418
F
Sbjct: 255 AF 256
>gi|53715401|ref|YP_101393.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis YCH46]
gi|60683368|ref|YP_213512.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis NCTC 9343]
gi|375360173|ref|YP_005112945.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis 638R]
gi|383119492|ref|ZP_09940231.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|423252341|ref|ZP_17233329.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
gi|423252566|ref|ZP_17233497.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|423261366|ref|ZP_17242266.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|423267898|ref|ZP_17246877.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|423272363|ref|ZP_17251331.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|423276831|ref|ZP_17255750.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
gi|423283171|ref|ZP_17262056.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
gi|52218266|dbj|BAD50859.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis YCH46]
gi|60494802|emb|CAH09608.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis NCTC 9343]
gi|251943805|gb|EES84344.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|301164854|emb|CBW24414.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis 638R]
gi|387774275|gb|EIK36389.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|392647270|gb|EIY40973.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
gi|392660468|gb|EIY54081.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|392695374|gb|EIY88591.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|392695564|gb|EIY88774.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|392695669|gb|EIY88876.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
gi|404581290|gb|EKA85990.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
Length = 221
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPI 322
TH++D G V+ A+T + S + + +VKK Y A+ P G + HY+
Sbjct: 53 VTHRLDRPVSGLVIFAKTSKALSRLNEMFKNSEVKKTYWAIVKNCPKQPEGELVHYL--- 109
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
Y EV KK +G + D+ + ++ L TGR
Sbjct: 110 --VRNEKQNKSYAYDKEVPNSKKAILNYKLIGHS-----------DHYFLLEVDLKTGRH 156
Query: 383 HQVRAQLAACGAPIVGDSMYMPA 405
HQ+R QLA G PI GD Y A
Sbjct: 157 HQIRCQLAKMGCPIKGDLKYGSA 179
>gi|198414279|ref|XP_002128102.1| PREDICTED: similar to RNA pseudouridylate synthase domain
containing 2 [Ciona intestinalis]
Length = 456
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+D II +VV++KP+ + S ++ LG L H+ID T
Sbjct: 179 LDTKVEIIEDNSKYVVVNKPSSIPIHPCGRFRNNSLVYILAKDLGYQG-LLGCHRIDRLT 237
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEG 332
G V+ +T+ ++I E+KV+K Y+ P I+ + P+++ R +
Sbjct: 238 SGIVIFGKTKNIAHKVAKEISERKVEKQYVCKVVGEFPSTDIVCN--EPVSLFNRKLGYA 295
Query: 333 WYLCQLEVMECKKVPWP-DATVGKAYS--IEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
V W + VGK S + + CK K TGRTHQ+R L
Sbjct: 296 -------------VAWKVEGVVGKEASTWFTRMSYDGTNSVVLCKPK--TGRTHQIRVHL 340
Query: 390 AACGAPIVGDSMY 402
G PI+ D +Y
Sbjct: 341 QYLGFPIINDPIY 353
>gi|39998442|ref|NP_954393.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
PCA]
gi|39985389|gb|AAR36743.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
PCA]
Length = 296
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
E T RA G P R H++D T G ++ ++ + R+++E +V+K+Y AL
Sbjct: 111 EYAVTLHFRACGSAEPARVIHRLDRGTSGVMIFPASRRAAAHISRELKEGRVEKVYWAL- 169
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
A +P +++ W + V + + A VGKA E
Sbjct: 170 VAGMP-----------------LADSWQV-DAPVAKVGTSRYGVAPVGKAALTEFRVVAR 211
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ A + + TGRTHQ+R LA G I+GD+ Y
Sbjct: 212 GNGATLVEARPRTGRTHQIRVHLAHGGLSIIGDTTY 247
>gi|329939071|ref|ZP_08288445.1| ribosomal pseudouridine synthase [Streptomyces griseoaurantiacus
M045]
gi|329301956|gb|EGG45849.1| ribosomal pseudouridine synthase [Streptomyces griseoaurantiacus
M045]
Length = 312
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+ ++HV V DKP + ++ E+ R L L L H++D T G V+
Sbjct: 97 VVYRDAHVLVADKPHFLATTPRGSHVAETALARLRRELDLPA-LTAAHRLDRLTAGLVLF 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
E + R+++V K Y AL AP + P + RLV E L
Sbjct: 156 TLRPEERGAYQTLFRDRRVHKEYEAL--APYDPALAL----PRTVRSRLVKERGEL---- 205
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
++VP V + +E G R ++ TG+THQ+R + A G PI+GD
Sbjct: 206 --RAREVPGEPNAVSRVELVEHDGTVGR-----YRLLPRTGQTHQLRVHMCALGLPILGD 258
Query: 400 SMY 402
+Y
Sbjct: 259 PLY 261
>gi|409913795|ref|YP_006892260.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
KN400]
gi|298507387|gb|ADI86110.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
KN400]
Length = 296
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
E T RA G P R H++D T G ++ ++ + R+++E +V+K+Y AL
Sbjct: 111 EYAVTLHFRACGSAEPARVIHRLDRGTSGVMIFPASRRAAAHISRELKEGRVEKVYWAL- 169
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS 366
A +P +++ W + V + + A VGKA E
Sbjct: 170 VAGMP-----------------LADSWQV-DAPVAKVGTSRYGVAPVGKAALTEFRVVAR 211
Query: 367 RDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ A + + TGRTHQ+R LA G I+GD+ Y
Sbjct: 212 GNGATLVEARPRTGRTHQIRVHLAHGGLSIIGDTTY 247
>gi|254491706|ref|ZP_05104885.1| pseudouridine synthase, RluA family [Methylophaga thiooxidans
DMS010]
gi|224463184|gb|EEF79454.1| pseudouridine synthase, RluA family [Methylophaga thiooxydans
DMS010]
Length = 318
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 24/187 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II +S +VL+KP+G +V + A + P L H++D T G
Sbjct: 97 IIFEDDSMLVLNKPSGLAVHAGS-----QIQVGVIEAFRIIKPELAFLELVHRLDRDTSG 151
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
C++LA++++ +++ ++ K YL L LP + + VS G +
Sbjct: 152 CLLLAKSRDSLLNLQQQMLSDQIDKRYLTLLKGILP---NAEELVEQPLLKNTVSSGERM 208
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
++ PD K I A ++KL TGRTHQ+R A P
Sbjct: 209 VKV---------TPDGKRAKTLFIRQQDL---SLAQLTEVKLYTGRTHQIRVHAAWTQHP 256
Query: 396 IVGDSMY 402
+ GD Y
Sbjct: 257 VAGDDKY 263
>gi|423316103|ref|ZP_17294008.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405584797|gb|EKB58679.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
Length = 229
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H+ID T G V+ A+T + S + ++ +++KK Y A+ P
Sbjct: 53 LGLVHRIDRPTSGLVIYAKTSKALSRLTQMVKNREIKKTYWAIV--------------PK 98
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPS-RDYAYECKIKLLTGR 381
+ P+ YL + E K + +P A G +I D+ +I L TGR
Sbjct: 99 EMIPQQQRLVHYLKKNE-KNNKAIVFPSAAQGAKEAILSYTIIQVLDHYQLLEINLETGR 157
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
HQ+RAQL+ G PI GD Y +P NP G
Sbjct: 158 HHQIRAQLSKIGVPIKGDLKY--------GAPRSNPDG 187
>gi|261400963|ref|ZP_05987088.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica ATCC 23970]
gi|269209209|gb|EEZ75664.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica ATCC 23970]
Length = 295
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 6/183 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V+DKP+G +V G + + RA L H++D T G +++
Sbjct: 61 IVYEDDALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMV 119
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H IR KK+YLAL LP ++ + + ++G + +
Sbjct: 120 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLPD---DNFHIKLPLFKYTGAQGEKMVR-- 174
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + V +S + + L TGRTHQ+R L + G PI GD
Sbjct: 175 VSEDGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGD 234
Query: 400 SMY 402
Y
Sbjct: 235 ERY 237
>gi|386392353|ref|ZP_10077134.1| dephospho-CoA kinase [Desulfovibrio sp. U5L]
gi|385733231|gb|EIG53429.1| dephospho-CoA kinase [Desulfovibrio sp. U5L]
Length = 558
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR--------TTHQID 270
R++ VLDKP G +V E T +R L LR H++D
Sbjct: 92 RVLYADPQLAVLDKPPGLTVHPAPGLPE---GTLVNRLLHHFPGLREMAGERPGIVHRLD 148
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G +++A T+ ++V K YLAL P G PI P+
Sbjct: 149 KDTSGLLLVALTEPVRLALAADFAARRVHKTYLALVHG-RPDGKGGDIRLPIGRDPK--- 204
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRD-YAYECKIKLLTGRTHQVRAQL 389
Y ++ V P A+S W + D A ++ + TGRTHQ+R L
Sbjct: 205 ---YRTKMAVPHKGGRP--------AHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHL 253
Query: 390 AACGAPIVGDSMYMP 404
A+ G PIVGD++Y P
Sbjct: 254 ASLGHPIVGDAVYGP 268
>gi|325104837|ref|YP_004274491.1| ribosomal large subunit pseudouridine synthase D [Pedobacter
saltans DSM 12145]
gi|324973685|gb|ADY52669.1| ribosomal large subunit pseudouridine synthase D [Pedobacter
saltans DSM 12145]
Length = 342
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-------GGTTDNIEESCATFASRA 256
HP R Y D II V+++K AG V GT N + +
Sbjct: 82 HPPRDTEVYPEDIPIDIIYEDNDVVLVNKVAGMVVHPGYGNWSGTLVNALTHHFSQLPQL 141
Query: 257 LGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV-GIM 315
G H+ID T G +V+++ ++ + ++ + +K+ YLAL LP GI+
Sbjct: 142 PGNDGRPGLVHRIDKDTSGLLVISKNEKSMASLAKQFFDHSIKRKYLALVWGDLPEDGII 201
Query: 316 THYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR-DYAYECK 374
+ Y+ G + +VM+ + D GK +S+ R +Y +
Sbjct: 202 SGYI------------GRSIKDRKVMDL----YDDPEKGK-WSVTHYKVVKRLNYVTLIE 244
Query: 375 IKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+L TGRTHQ+RA + A G P+ D+ Y
Sbjct: 245 CQLETGRTHQIRAHMKAIGHPLFNDTAY 272
>gi|393776856|ref|ZP_10365150.1| 23S rRNA pseudouridine synthase [Ralstonia sp. PBA]
gi|392716213|gb|EIZ03793.1| 23S rRNA pseudouridine synthase [Ralstonia sp. PBA]
Length = 388
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 86/194 (44%), Gaps = 31/194 (15%)
Query: 220 IIAVTESHVVLDKPAGTSV-------GGTTDN---IEESCATFASRALGLTTPLRTTHQI 269
++ ES +V++KPAG V GT N + A+ RA G+ H++
Sbjct: 144 VVYEDESLLVINKPAGLVVHPAAGNWSGTVLNGVLYRDPQASRLPRA-GIV------HRL 196
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPLPVGIMTHYMRPINIAPRL 328
D T G +V+ART + R+++ + VK+ YLAL P G + PI PR
Sbjct: 197 DKETSGLMVIARTLTAQTDLVRQLQARTVKRTYLALVWGEPPESGTIDA---PIGRDPR- 252
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
E + +E K P T + D G R + +L TGRTHQ+R
Sbjct: 253 --ERTRMAIIESASGK----PARTHFETLQTVDLG---RSAISLVRCQLETGRTHQIRVH 303
Query: 389 LAACGAPIVGDSMY 402
A G P+VGD +Y
Sbjct: 304 FQAFGYPLVGDPVY 317
>gi|116331588|ref|YP_801306.1| pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116125277|gb|ABJ76548.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 277
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 24/191 (12%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
++ N RI TES + +KP G V T D+ E+ A L L LRT +++D T
Sbjct: 4 VNLNIRIFYETESFLFAEKPPGIPVHATKDSKRENFADRLQEQLSLEY-LRTVNRLDLDT 62
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVSE 331
G V L + + R + K K+YL + + T Y++ N R V
Sbjct: 63 SGLVFLCKNPDKNKEADRIL--KSSSKIYLCVADGIVEEEHFTETCYIKDGNKKVRKVFS 120
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G E + K+ + YS+ KL TGR HQ+R L+
Sbjct: 121 GGDKAVTEFLTLKR------NLKDHYSV-------------LLAKLHTGRRHQIRLHLSE 161
Query: 392 CGAPIVGDSMY 402
G IVGD +Y
Sbjct: 162 KGHSIVGDYVY 172
>gi|116327749|ref|YP_797469.1| pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116120493|gb|ABJ78536.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 277
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 24/191 (12%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
++ N RI TES + +KP G V T D+ E+ A L L LRT +++D T
Sbjct: 4 VNLNIRIFYETESFLFAEKPPGIPVHATKDSKRENFADRLQEQLSLEY-LRTVNRLDLDT 62
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVSE 331
G V L + + R + K K+YL + + T Y++ N R V
Sbjct: 63 SGLVFLCKNPDKNKEADRIL--KSSSKIYLCVADGIVEEEHFTETCYIKDGNKKVRKVFS 120
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G E + K+ + YS+ KL TGR HQ+R L+
Sbjct: 121 GGDKAVTEFLTLKR------NLKDHYSV-------------LLAKLHTGRRHQIRLHLSE 161
Query: 392 CGAPIVGDSMY 402
G IVGD +Y
Sbjct: 162 KGHSIVGDYVY 172
>gi|322385565|ref|ZP_08059209.1| ribosomal large subunit pseudouridine synthase [Streptococcus
cristatus ATCC 51100]
gi|417921032|ref|ZP_12564527.1| pseudouridine synthase, RluA family [Streptococcus cristatus ATCC
51100]
gi|321270303|gb|EFX53219.1| ribosomal large subunit pseudouridine synthase [Streptococcus
cristatus ATCC 51100]
gi|342834952|gb|EGU69210.1| pseudouridine synthase, RluA family [Streptococcus cristatus ATCC
51100]
Length = 297
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS----RALGLTT 261
K F +D + I+ E +VLDKPAG + + N + A F R
Sbjct: 64 KGFESLEAVDRDLSIVYEDEHFLVLDKPAGVASIPSV-NHSNTMANFVKAYYIRQDYENQ 122
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
+ ++D T G ++ A+ + +++++K ++K Y AL + + + P
Sbjct: 123 QVHIVTRLDRDTSGLMLFAKHGYAHARLDKQLQKKMIEKRYYALVQGSGELKLEGDIIAP 182
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
I P + + + + K VG+ I Y I+L TGR
Sbjct: 183 IGRDPDSI-----ITRCVTKDGKYAHTSYKVVGQFGDI-----------YLVDIRLHTGR 226
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL--------NPFGKCQKEYAS 427
THQ+R A G P++GD +Y A ++ L NPF + Q + S
Sbjct: 227 THQIRVHFAHLGFPLLGDDLYGGTLEAGITRQALHCHSLSFYNPFLEKQLQLES 280
>gi|421258137|ref|ZP_15711361.1| hypothetical protein AAUPMC_06817 [Pasteurella multocida subsp.
multocida str. Anand1_cattle]
gi|401699315|gb|EJS90807.1| hypothetical protein AAUPMC_06817 [Pasteurella multocida subsp.
multocida str. Anand1_cattle]
Length = 221
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYC 286
VV+DKP G SV EE+ A L P + H++D T G ++LA Q
Sbjct: 14 VVIDKPCGISVHKD----EEAVGLTTLVAQQLDVPQVWLVHRLDKITSGLLLLALNQRAA 69
Query: 287 SIFHRKIREKKVKKLYLALTT------APLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
E +++K YLAL+ L VG M R W LC +
Sbjct: 70 RALSLLFAEHRIQKTYLALSQHKPKKKQGLIVGDMQKARR----------GAWKLCPTKT 119
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
+ + + +S +C R + +K TG+THQ+R + + G+PI+GD+
Sbjct: 120 ---------NPAITRFHSTLNCEPNLRLFI----LKPQTGKTHQLRVAMKSLGSPILGDA 166
Query: 401 MY 402
+Y
Sbjct: 167 LY 168
>gi|53804068|ref|YP_114042.1| ribosomal large subunit pseudouridine synthase A [Methylococcus
capsulatus str. Bath]
gi|53757829|gb|AAU92120.1| ribosomal large subunit pseudouridine synthase A [Methylococcus
capsulatus str. Bath]
Length = 212
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL KP+G ++ C ++R H++D T G +V+AR
Sbjct: 12 LVLSKPSGLLAVPGRGQDKQDC--LSARVRARYPDALVVHRLDMATSGLMVMARGIAVQR 69
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
I + ++V K Y AL G++ P GW L ++
Sbjct: 70 ILSQSFARREVLKRYEALVH-----GVLE--------TPPETENGWSSIDLPLLSD---- 112
Query: 348 WPDATVGKAYSIEDCGWPS---------RDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
WP+ + K + G PS D A +++ +TGR+HQ+R LAA G P++G
Sbjct: 113 WPNRPLQKVDPLH--GKPSLTRWRILGHEDGATRVELEPVTGRSHQLRVHLAALGYPVLG 170
Query: 399 DSMY 402
D +Y
Sbjct: 171 DPLY 174
>gi|389878460|ref|YP_006372025.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
gi|388529244|gb|AFK54441.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
Length = 326
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 89/203 (43%), Gaps = 21/203 (10%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV--GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
R++ T +++DKP+G +V G TD + R P R H++D T
Sbjct: 95 RGRVLLETADLILIDKPSGLAVQGGSGTDRHLDGMLDALKRHPDDERP-RLVHRLDRDTS 153
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPRLVSEG 332
G + LAR + R RE+ K+Y A+T P P G++ + +A R V G
Sbjct: 154 GVLALARNARAAAWATRAFRERTTTKIYWAVTLGVPRPARGVID-----LPLAKRQVERG 208
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ V E T Y + G P A +K LTGRTHQ+RA LAA
Sbjct: 209 GERM-VAVDEGDG-----QTAVTEYEVLAAGGPCALVA----LKPLTGRTHQIRAHLAAI 258
Query: 393 GAPIVGDSMYMPAAIAQLSSPGL 415
G PIVGD Y A+ L GL
Sbjct: 259 GTPIVGDLKYGGQAV-DLRGQGL 280
>gi|373852516|ref|ZP_09595316.1| pseudouridine synthase [Opitutaceae bacterium TAV5]
gi|372474745|gb|EHP34755.1| pseudouridine synthase [Opitutaceae bacterium TAV5]
Length = 263
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTT-DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++ ES + DKPAG V D G T H++D T G ++
Sbjct: 9 VVYEDESMLAFDKPAGLLVAPDRWDKQRGYLMRLVHERYGPDTA--NVHRLDADTSGVLL 66
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM--------THYMRPINIAPRLVS 330
AR + + + + K K+Y AL P M + P A L +
Sbjct: 67 CARNKPALDVLSGQFQSKAATKIYHALVVVMPPDEAMKVGSVIRDAQGLLPDEFAVEL-A 125
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY-ECKIKLLTGRTHQVRAQL 389
G + M + A + ++E G +A+ EC+ LTGRTHQ+R L
Sbjct: 126 LGADEARPGRMRVFRKRGGKACATRFRTLERFGR----FAFVECRP--LTGRTHQIRVHL 179
Query: 390 AACGAPIVGDSMY-MPAAIAQLSS 412
AA GAPI+ D+ Y +P AI +LS
Sbjct: 180 AAAGAPILNDAFYGVPGAILKLSD 203
>gi|374263855|ref|ZP_09622401.1| hypothetical protein LDG_8864 [Legionella drancourtii LLAP12]
gi|363535698|gb|EHL29146.1| hypothetical protein LDG_8864 [Legionella drancourtii LLAP12]
Length = 321
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 25/180 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCAT-FASRALGLTTPLRT--THQIDNCTEGCVVLARTQE 284
+VL+KPA V N E + A L R H++D T G +V+A+T
Sbjct: 97 LVLNKPANMVVHPGAGNREHTLVNALLHHAPSLHHLPRAGIIHRLDKDTTGLLVVAKTLT 156
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVG--IMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ R+++ +++++ Y+ L + G I T + R PR ++ V+E
Sbjct: 157 AHTSLIRQMQAREIQRHYVTLVQGHVISGGTIETGFGR----HPR------NRLKMAVLE 206
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ TV K Y +DY +KL+TGRTHQ+R L P+VGD +Y
Sbjct: 207 QGREAITHYTVKKQY---------QDYTL-LDVKLMTGRTHQIRVHLTHINHPVVGDQLY 256
>gi|257068055|ref|YP_003154310.1| 23S RNA-specific pseudouridylate synthase [Brachybacterium faecium
DSM 4810]
gi|256558873|gb|ACU84720.1| 23S RNA-specific pseudouridylate synthase [Brachybacterium faecium
DSM 4810]
Length = 305
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RI+ +VLDKP + ++ S RA G++T L H++D T G +
Sbjct: 80 RILHRDAHLLVLDKPHDMATMPRGAHVLSSALVRLRRATGIST-LVPLHRLDRRTAGVLA 138
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
E S + + ++V K Y AL L +G T P + R V +
Sbjct: 139 FGIRPEERSAYQQLFARQEVDKEYEAL----LVLGPGTSL--PTAVGERAVLRDRLDKRR 192
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
+ + + P A + G + + ++ TGRTHQ+RAQLAA GAPI+G
Sbjct: 193 GELTTRVLDGP-PNAETALEVRAAG----EGLLQVRLHPRTGRTHQLRAQLAARGAPILG 247
Query: 399 DSMY 402
+ +Y
Sbjct: 248 EDLY 251
>gi|167041971|gb|ABZ06708.1| putative RNA pseudouridylate synthase [uncultured marine
microorganism HF4000_141E02]
Length = 320
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
N+ +I +S ++++KP+G +V G + + E +F + L H++D T
Sbjct: 91 NNIVIFENDSFLLVNKPSGLAVHGGSGIHLGLIELLRSFREQR---NEHLELVHRLDKDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW 333
GC+++++ + H RE KV+K YL L VG T + I+ +++S
Sbjct: 148 SGCLLVSKKKSKLRKLHEYFREGKVQKTYLGLM-----VGKFTQTVYEIDQPLKIIS--- 199
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
E ++ PD + KA + ++ A KI+ +TG+THQ+RA
Sbjct: 200 ------TPENGRLAVPDDSGTKAKTKFFLMEKYKNSAL-FKIEPITGKTHQIRAHAKYMK 252
Query: 394 APIVGDSMY 402
P+ D Y
Sbjct: 253 TPLAADQRY 261
>gi|167768426|ref|ZP_02440479.1| hypothetical protein CLOSS21_02985 [Clostridium sp. SS2/1]
gi|317499212|ref|ZP_07957487.1| RNA pseudouridylate synthase [Lachnospiraceae bacterium 5_1_63FAA]
gi|429763003|ref|ZP_19295370.1| RNA pseudouridine synthase [Anaerostipes hadrus DSM 3319]
gi|167709950|gb|EDS20529.1| RNA pseudouridine synthase [Clostridium sp. SS2/1]
gi|316893526|gb|EFV15733.1| RNA pseudouridylate synthase [Lachnospiraceae bacterium 5_1_63FAA]
gi|429180155|gb|EKY21381.1| RNA pseudouridine synthase [Anaerostipes hadrus DSM 3319]
Length = 236
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVG----GTTDNIEE-SCATFASRALGLTTPLRTTHQIDNCTE 274
II + VV +KP G V G D + + F L H++D
Sbjct: 9 IIYKDDQIVVCEKPKGIPVSSDKTGDMDLLHQLKNQLFFEENTDGEPQLYLVHRLDRPVG 68
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYM--RPINIAPRLVS 330
G +V ART++ + +I++ +K Y A+ T LP G Y+ P N ++V
Sbjct: 69 GVMVFARTKKAAASLTEQIKDHTFEKDYQAVLTGWLPDDEGTFRDYLLKDPKNNVSKIVK 128
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR-DYAYECKIKLLTGRTHQVRAQL 389
EG + +++ Y + D S+ Y Y C I L TGR HQ+R Q
Sbjct: 129 EGTPGAKEAILD--------------YEVIDMMEDSKMKYTY-CLIHLETGRHHQIRVQT 173
Query: 390 AACGAPIVGDSMYMP 404
++ G I GD+ Y P
Sbjct: 174 SSRGFGIWGDTKYNP 188
>gi|349612244|ref|ZP_08891467.1| hypothetical protein HMPREF1027_00894 [Lactobacillus sp. 7_1_47FAA]
gi|348609073|gb|EGY59038.1| hypothetical protein HMPREF1027_00894 [Lactobacillus sp. 7_1_47FAA]
Length = 292
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 45/196 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KPAG TD C ++ LG + + H++D T G
Sbjct: 93 IIYENDDVLVINKPAGQKTHPNLYETDTALNDCTSY----LGYSPYI--VHRLDMLTNGL 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVGIMTHYMRPINIAP 326
+++A+ I ++++ +K + + Y A A LP+G P+++
Sbjct: 147 LLVAKNPAVVPILNKQLIDKTLSRSYFAWIDATNDISDNGTINLPIG-----DDPLDMRK 201
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
R+V KK T K K++L TGRTHQ+R
Sbjct: 202 RMVRTDGLKAITHYQVVKK------TANKIL---------------VKLQLETGRTHQIR 240
Query: 387 AQLAACGAPIVGDSMY 402
LAA G PI+GD +Y
Sbjct: 241 VHLAAIGHPIIGDPLY 256
>gi|417850958|ref|ZP_12496770.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338220192|gb|EGP05741.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 311
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSV-GGTTDN--IEESCATFASRALGLTTPLRTTHQIDNC 272
+I+ E +VL+KP+G +V GG+ N + E+ T A L H++D
Sbjct: 82 LEKQILFEDECLLVLNKPSGIAVHGGSGLNFGVIEALRTLRPDA----RFLELVHRLDRD 137
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G + + + AP L +E
Sbjct: 138 TSGILLVAKKRSALRSLHEQLREKTVQKDYLALVR-----GQWQSHCKVVK-APLLKNE- 190
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
L E ++ + P T +SIE+ +YA K +TGRTHQ+R
Sbjct: 191 --LSSGERIVRVSEQGKPSET---RFSIEE----RYEYATLVKASPVTGRTHQIRVHTQY 241
Query: 392 CGAPIVGDSMY 402
G PI D Y
Sbjct: 242 AGHPIALDDKY 252
>gi|429726539|ref|ZP_19261327.1| RNA pseudouridine synthase [Prevotella sp. oral taxon 473 str.
F0040]
gi|429146008|gb|EKX89081.1| RNA pseudouridine synthase [Prevotella sp. oral taxon 473 str.
F0040]
Length = 232
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 68/166 (40%), Gaps = 30/166 (18%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVG 313
L T H++D G VV ART + S + R +V K Y A+T PL +G
Sbjct: 51 LGTVHRLDRPVSGIVVYARTSKALSRLNEMFRLGQVHKTYHAITPKTPLARSGQPPLALG 110
Query: 314 IMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
T+ + + R Y EV K+ DAT+ K D
Sbjct: 111 TPTNLVHFLTRNER--QNKAYAHLHEVSGAKRASL-DATIQKI----------GDNTQLI 157
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
++ L TGR HQ+R QLAA G PI GD Y +P NP G
Sbjct: 158 EVNLHTGRHHQIRCQLAAVGFPIRGDLKY--------GAPRSNPDG 195
>gi|359419113|ref|ZP_09211078.1| putative pseudouridine synthase [Gordonia araii NBRC 100433]
gi|358244957|dbj|GAB09147.1| putative pseudouridine synthase [Gordonia araii NBRC 100433]
Length = 286
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 26/198 (13%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P +D++ I+ E+ VV+DKP + ++ ++ R LG +
Sbjct: 63 PDEVPIPFDLE----ILHEDENLVVVDKPHFLATMPRGRHVVQTALVRLRRQLG-NDAIA 117
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G V+ R + + ++ V+K Y A + + + + +
Sbjct: 118 PVHRLDRLTAGVVMFTRRPRVRAAYQEMFADRAVRKTYWAASAT-----LGDRWREEVRV 172
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
A R+ L + V P + + ++D ++ TGRTHQ
Sbjct: 173 ANRIEKRAGDL------RARVVDGPVNAISRITRVDDG----------FRLVPETGRTHQ 216
Query: 385 VRAQLAACGAPIVGDSMY 402
+R +A GAPIVGD +Y
Sbjct: 217 LRVHMAGLGAPIVGDPLY 234
>gi|406672366|ref|ZP_11079591.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
gi|405586910|gb|EKB60638.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
Length = 237
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H+ID T G V+ A+T + S + ++ +++KK Y A+ P
Sbjct: 61 LGLVHRIDRPTSGLVIYAKTSKALSRLTQMVKNREIKKTYWAIV--------------PK 106
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIKLLTGR 381
+ P+ YL + E K + +P A G +I Y+ +I L TGR
Sbjct: 107 EMIPQQQRLVHYLKKNE-KNNKAIVFPSAAQGAKEAILSYTIIQVLEHYQLLEINLETGR 165
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
HQ+RAQL+ G PI GD Y +P NP G
Sbjct: 166 HHQIRAQLSKIGVPIKGDLKY--------GAPRSNPDG 195
>gi|375308926|ref|ZP_09774208.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
gi|375079138|gb|EHS57364.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
Length = 248
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 22/154 (14%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G ++ A+T + S +R + +K+Y A+ P G +THY
Sbjct: 66 LGLVHRLDRPVGGAMIFAKTSKAASRLSESVRGRHFRKMYTAVLNGVPAAPQGRLTHY-- 123
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
L + + P T K +E D +I+L TG
Sbjct: 124 --------------LLKDSRTNTVQAVRPGTTGAKEAVLEYRVLGQVDGLSLVQIQLHTG 169
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
R+HQ+R Q+ A G P+ GD Y LS PG
Sbjct: 170 RSHQIRVQMQAIGCPLYGDQKYG----GSLSRPG 199
>gi|377556998|ref|ZP_09786664.1| Pseudouridine synthase [Lactobacillus gastricus PS3]
gi|376166644|gb|EHS85533.1| Pseudouridine synthase [Lactobacillus gastricus PS3]
Length = 292
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 30/183 (16%)
Query: 228 VVLDKPAG-TSVGGTTDNIEESCATFASRALGL----TTPLRTTH---QIDNCTEGCVVL 279
+V++KPAG +SV G T + T +R G +P + H ++D T G +++
Sbjct: 88 LVVNKPAGVSSVPGPT----QPTDTILNRVTGYLRQGQSPDQRPHLVTRLDRYTSGLMLI 143
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ S+ +++ ++ K YLA+ LP H + IA R+ + + +
Sbjct: 144 AKHNVATSMISPQVQTHQMLKEYLAVVQGRLP---EPHQLITSPIA-RVAGQAQRVVDPD 199
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+ + W + T G DY+ +++L +GRTHQ+R L + G PIVGD
Sbjct: 200 GQKAETEYWVEETKG-------------DYSL-VRLQLHSGRTHQIRVHLNSIGYPIVGD 245
Query: 400 SMY 402
++Y
Sbjct: 246 ALY 248
>gi|417644484|ref|ZP_12294472.1| pseudouridine synthase, RluA family [Staphylococcus warneri VCU121]
gi|445059305|ref|YP_007384709.1| hypothetical protein A284_04740 [Staphylococcus warneri SG1]
gi|330684742|gb|EGG96437.1| pseudouridine synthase, RluA family [Staphylococcus epidermidis
VCU121]
gi|443425362|gb|AGC90265.1| hypothetical protein A284_04740 [Staphylococcus warneri SG1]
Length = 276
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + E + ++Y A A LP+ +P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEENDITRIYKAHVKALLPI-------KPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + + + C E +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHPNKKRISNTGQRAITHILSSNMIKENVC---------ELEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|422519800|ref|ZP_16595846.1| RNA pseudouridine synthase [Propionibacterium acnes HL074PA1]
gi|313771117|gb|EFS37083.1| RNA pseudouridine synthase [Propionibacterium acnes HL074PA1]
Length = 281
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E +V+DKP S ++ ES LGL L H++D T G ++L
Sbjct: 64 ILYSDERILVVDKPHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLL 122
Query: 280 ARTQE----YCSIFHRKIREKKVKKLYLALTTAPLPVGI-MTHYMRPINIAPRLVSEGWY 334
R ++ Y IF R+ + VKK L G +T + R++ E
Sbjct: 123 TRERKWRRPYQEIFERR---EVVKKYRLVAPVVHDSAGEGVTATKSGWQVRSRIIKE--- 176
Query: 335 LCQLEVMECKKVPW-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
+++ ++VP P+A A E GW YE + TGRTHQ+R + G
Sbjct: 177 ---RGILQAREVPGVPNAVTDIALIGEHGGW----GLYEASPR--TGRTHQIRLHMQRLG 227
Query: 394 APIVGDSMY 402
APIV D Y
Sbjct: 228 APIVNDPFY 236
>gi|329961725|ref|ZP_08299756.1| RNA pseudouridine synthase [Bacteroides fluxus YIT 12057]
gi|328531466|gb|EGF58306.1| RNA pseudouridine synthase [Bacteroides fluxus YIT 12057]
Length = 223
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPI 322
TH++D G VV A+T + S + ++ +VKK Y A+ P G + HYM
Sbjct: 53 VTHRLDRPVSGLVVFAKTSKALSRLNEMFKDGEVKKTYWAVVKNRPPEEEGELVHYM--- 109
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
Y E KK +GK S++Y Y +I L TGR
Sbjct: 110 --VRNEKQNKSYAYDKERPGSKKAILHYRLIGK----------SQNY-YLLEIDLKTGRH 156
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R QLA G PI GD Y
Sbjct: 157 HQIRCQLAKMGCPIKGDLKY 176
>gi|336391681|ref|ZP_08573080.1| pseudouridylate synthase [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
gi|420146010|ref|ZP_14653452.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402313|gb|EJN55670.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 296
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 39/202 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGL-------TTPLRTTHQIDNCTEGCVVLA 280
+V+DKPA V ++ T A+R LG + ++D T G ++ A
Sbjct: 88 LVVDKPA--QVASLPSHVYPK-DTMANRVLGYYQRQGYANQGIHIVTRLDRGTSGLMIFA 144
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ ++ ++ ++++K YLA+ G +T+ I
Sbjct: 145 KHAFAHTLLSEQLHTQQLQKTYLAVVQ-----GQLTYTHNRIT----------------- 182
Query: 341 MECKKVPWP----DATVGKAYSIEDCGWPSRDY--AYECKIKLLTGRTHQVRAQLAACGA 394
K+ PW VG ++ + W + + A K++L TGRTHQ+R AA G
Sbjct: 183 FPIKRAPWSFIERTTAVGGRSALTEY-WCQQQFKNAALVKVRLHTGRTHQIRVHFAAIGH 241
Query: 395 PIVGDSMYMPAAIAQLSSPGLN 416
P++GD +Y I L P L+
Sbjct: 242 PLLGDQLYQGPQIINLQRPALH 263
>gi|452752001|ref|ZP_21951745.1| Ribosomal large subunit pseudouridine synthase D [alpha
proteobacterium JLT2015]
gi|451960521|gb|EMD82933.1| Ribosomal large subunit pseudouridine synthase D [alpha
proteobacterium JLT2015]
Length = 319
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 79/191 (41%), Gaps = 40/191 (20%)
Query: 228 VVLDKPAGTSV--------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+V+DKPAG V G + + C S G+T P H+ID T G +V
Sbjct: 95 IVVDKPAGLVVHPAAGNRDGTLVNALLHHCGGELSGIGGVTRP-GIVHRIDKDTSGLLVA 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+T + V + YLA+T +PV + +P+
Sbjct: 154 AKTAHAHMALAAQFAAHSVGRRYLAITRG-VPVPPAARVEGNVGRSPK------------ 200
Query: 340 VMECKKVPWPDATVGKA--------YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
KK+ D GKA ++ED EC+++ TGRTHQVR +AA
Sbjct: 201 --NRKKMAVLDDGRGKAAVTHYRTLRALEDAAL------IECRLE--TGRTHQVRVHMAA 250
Query: 392 CGAPIVGDSMY 402
G P++GD +Y
Sbjct: 251 QGFPLLGDPLY 261
>gi|113460859|ref|YP_718926.1| 23S rRNA pseudouridylate synthase C [Haemophilus somnus 129PT]
gi|112822902|gb|ABI24991.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
somnus 129PT]
Length = 326
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 23/193 (11%)
Query: 228 VVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+G +V GG+ N E+ T A L H++D T G +++A+ +
Sbjct: 108 LVLNKPSGLAVHGGSGLNFGAIEALRTLRPEA----RFLELVHRLDRDTSGILLIAKKRS 163
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
H ++REK ++K YLAL G + + I AP L +E +++
Sbjct: 164 ALRSLHEQLREKTIQKEYLALVR-----GHWQSHCKMIQ-APLLKNE--LTSGERIVKVN 215
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
+ P T +S+E+ + A K +TGRTHQ+R G PI D Y
Sbjct: 216 EQGKPSET---KFSVEE----RYNNATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGD 268
Query: 405 AAI-AQLSSPGLN 416
Q+++ GLN
Sbjct: 269 KNFDQQMTALGLN 281
>gi|296113272|ref|YP_003627210.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis RH4]
gi|416240122|ref|ZP_11632237.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC1]
gi|295920966|gb|ADG61317.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BBH18]
gi|326566421|gb|EGE16571.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC1]
Length = 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGL 259
H + P DID II E+ ++++KPAG V G T + + + L
Sbjct: 110 HSEDLPENIDID----IIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHL 165
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H+ID T G +V+ART+ ++++K V + Y + +G + +
Sbjct: 166 PRA-GLVHRIDKDTTGLLVIARTKSAQLSLINQLKDKSVYRHYQCIA-----LGAVHEVL 219
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I + G + M K+ P T I + + Y+ I L T
Sbjct: 220 RHAQIDAPI---GRHSTHRTKMAVKQTGKPALT-----HIVNAKYLHERYSL-LDIHLKT 270
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R L+ G P+VGD +Y
Sbjct: 271 GRTHQIRVHLSYVGHPLVGDPVY 293
>gi|260577148|ref|ZP_05845125.1| pseudouridine synthase, RluA family [Rhodobacter sp. SW2]
gi|259020622|gb|EEW23941.1| pseudouridine synthase, RluA family [Rhodobacter sp. SW2]
Length = 349
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 6/180 (3%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++ E +VL+KP G S GG+ + G + H++D T G ++
Sbjct: 93 VLFKDEHIIVLNKPPGLPSQGGSGQGDRHVDGLTEALKFGYKERPKLVHRLDKDTSGVLI 152
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
LART R + +K+Y AL P P Y + AP G
Sbjct: 153 LARTDRVARALSEAFRHRNTRKIYWALVAGVPHPRQGSIKYA--LMKAPGHGRGGEGEKM 210
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
L + K +PDA +A + W ++ +TGRTHQ+RA +A G PI+
Sbjct: 211 LCIHPAKTADYPDAK--RAQTDYFVLWFLGSRLSWVALEPITGRTHQLRAHMAEMGHPIL 268
>gi|313149904|ref|ZP_07812097.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis 3_1_12]
gi|423280402|ref|ZP_17259314.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 610]
gi|424665225|ref|ZP_18102261.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 616]
gi|313138671|gb|EFR56031.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis 3_1_12]
gi|404574966|gb|EKA79712.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 616]
gi|404584017|gb|EKA88688.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 610]
Length = 224
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 26/157 (16%)
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPI 322
TH++D G V+ A+T + S + + +V+K Y A+ P G + HY+
Sbjct: 53 VTHRLDRPVSGLVIFAKTSKALSRLNEMFKNSEVRKTYWAVVKNCPKQPEGELIHYL--- 109
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
Y EV KK +G++ D + ++ L TGR
Sbjct: 110 --VRNEKQNKSYAYDKEVPNSKKAILSYKLIGRS-----------DNYFLLEVDLKTGRH 156
Query: 383 HQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
HQ+R QLA G PI GD Y SP NP G
Sbjct: 157 HQIRCQLAKMGCPIKGDLKY--------GSPRSNPDG 185
>gi|410611272|ref|ZP_11322371.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
gi|410169123|dbj|GAC36260.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
Length = 317
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F A RAL L H++D T GC+++A+
Sbjct: 103 IVLNKPSGTAVHGG------SGLSFGVIEALRALRPQQKFLELVHRLDRDTSGCLLIAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVME 342
+ H ++R++KV K Y AL P R AP L + V+
Sbjct: 157 RSALKSLHEQLRDRKVDKRYQALVAGEWPAN------RFKVKAPLL--KNTLKSGERVVL 208
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ P T Y I S ++A + +TGRTHQ+R G PI D+ Y
Sbjct: 209 VNEEGKPSET---RYRI----LESFNHATLVEASPITGRTHQIRVHCLHAGHPIAADNRY 261
Query: 403 MPAAIAQLSS 412
Q +S
Sbjct: 262 GDKDFDQRTS 271
>gi|325300058|ref|YP_004259975.1| pseudouridine synthase [Bacteroides salanitronis DSM 18170]
gi|324319611|gb|ADY37502.1| pseudouridine synthase [Bacteroides salanitronis DSM 18170]
Length = 224
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L TH++D G VV A+T + S + R +V+K Y A+ P G + HY+
Sbjct: 51 LGVTHRLDRPVSGLVVFAKTSKALSRLNDMFRNGEVRKTYWAIVKQCPPAEEGELVHYL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV + KK Y + D S +Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDREVKDSKKAVL-------HYKLID---RSENY-YLVEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLA G PI GD Y
Sbjct: 155 RHHQIRCQLAKAGCPIKGDLKY 176
>gi|269792594|ref|YP_003317498.1| RluA family pseudouridine synthase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100229|gb|ACZ19216.1| pseudouridine synthase, RluA family [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 320
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 219 RIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLR--TTHQIDNC 272
R++ + VV+DKPAG V G + + L R H++D
Sbjct: 97 RVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDLMELNGVKRPGIVHRLDAT 156
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +V+AR R ++++V K+YLA+ L G + + PI P
Sbjct: 157 TSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTL-RGEGSVSL-PIGRDPD----- 209
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY-ECKIKLLTGRTHQVRAQLAA 391
+ M C VPW + + I W Y+ C+IK TGRTHQ+R + +
Sbjct: 210 ----NRKRMAC--VPWGREALTRYRVI----WSRGGYSLVACQIK--TGRTHQIRVHMRS 257
Query: 392 CGAPIVGDSMY 402
G P+VGD +Y
Sbjct: 258 LGHPLVGDRIY 268
>gi|291440659|ref|ZP_06580049.1| ribosomal pseudouridine synthase [Streptomyces ghanaensis ATCC
14672]
gi|291343554|gb|EFE70510.1| ribosomal pseudouridine synthase [Streptomyces ghanaensis ATCC
14672]
Length = 319
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 20/218 (9%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R D E G +L H + P + + ++ E VV+DKP + +
Sbjct: 67 RAVPADAPYEPGLFLWFH---RELPAEVPVPFPLEVVHRDEHIVVVDKPHFLATTPRGSH 123
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ ++ R LG+ L H++D T G V+ + R+++V K Y A
Sbjct: 124 VAQTALARLRRELGIPE-LGAAHRLDRLTAGLVLFTVRPGERGAYQTLFRDRRVHKEYEA 182
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGW 364
+ AP G+ P + R+V E L EV E + P+A +
Sbjct: 183 V--APYDPGLDL----PRTVRSRIVKERGELAAREV-EGE----PNALTLVELTEHRADG 231
Query: 365 PSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P R ++ TG+THQ+R ++A G PI+GD +Y
Sbjct: 232 PGR-----YRLVPGTGQTHQLRVHMSALGVPILGDPLY 264
>gi|172058049|ref|YP_001814509.1| RluA family pseudouridine synthase [Exiguobacterium sibiricum
255-15]
gi|171990570|gb|ACB61492.1| pseudouridine synthase, RluA family [Exiguobacterium sibiricum
255-15]
Length = 293
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 57/254 (22%)
Query: 171 SIK--GKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR---CYDIDWNS---RIIA 222
SIK G +R Q +V++ V AG R+HV RFP D+ S I+
Sbjct: 35 SIKHHGDILRNEQHV----NVNEPVHAGD--RIHV---RFPEEQPAQDMHATSGELDILF 85
Query: 223 VTESHVVLDKPAGTSVGGTTDNIEESCATFA---SRALGLTTPLRTTHQIDNCTEGCVVL 279
+ ++++KP G + + + E S + F R + + +++D T G VV
Sbjct: 86 EDDWLLIVNKPPGMASIPSRLHPERSLSNFVLGYYRQHQIPYAIHIVNRLDRDTSGLVVF 145
Query: 280 ARTQEYCSIFHRKIREKKVKKL----YLAL-------TTAPLPVGIMTHYMRPINIAPRL 328
A+ S+ H ++ + + L Y+AL T LP+G H + R+
Sbjct: 146 AK----HSLAHHQLSKMQQNGLLDRRYVALIEGTIPAQTIDLPIGQTDH-----SFMERM 196
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V E ++ + + A+S E IKL TGRTHQ+R
Sbjct: 197 VREDGQQAITHILTSEPI--------TAFSRE---------LSRLTIKLETGRTHQIRVH 239
Query: 389 LAACGAPIVGDSMY 402
LAA G P+VGD+MY
Sbjct: 240 LAALGHPLVGDTMY 253
>gi|340504088|gb|EGR30574.1| hypothetical protein IMG5_129080 [Ichthyophthirius multifiliis]
Length = 405
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 22/189 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II E+++V+ KP V + ++ + + L T H++D T G ++
Sbjct: 118 KIIYEDENYLVVSKPPYMCVHASGGHLHNTLIDILKYQMNYKNQLFTLHRLDKLTSGILI 177
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLVSEGWYLC 336
L + +E SI K +E+K+KK Y A + NIA + EG YLC
Sbjct: 178 LGKNKE-ISI---KFQEEKIKKKYYARVEGNFFPEKQDQEEIICERNIACQSRKEGKYLC 233
Query: 337 QLEVMECKKVPWPDATVGKAYS---IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
D GK YS + + S+ + +TGRTHQ+R + G
Sbjct: 234 ------------SDNKEGK-YSKTIFKKIWYDSKTNTSLIQCNPITGRTHQIRVHCSFLG 280
Query: 394 APIVGDSMY 402
PIV D Y
Sbjct: 281 YPIVNDINY 289
>gi|365904830|ref|ZP_09442589.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 301
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 219 RIIAVTESHVVLDKP---AGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
++I + +V++KP A T + + + G + + ++D T G
Sbjct: 83 KVIFEDQYFLVINKPPKIASLPAKARTSKTMANIVKYYLQQKGENSSIHLVTRLDRDTSG 142
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+V A+ S+ + + K +K YLA+ + G+ +++ + +YL
Sbjct: 143 LMVFAKDSYAHSMLDQILHTDKFQKYYLAIVS-----GVFQKKSGLVDLPIGIDQAAFYL 197
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
++ K+ TV + A ++KLLTGRTHQ+R + A G P
Sbjct: 198 RTIDHESGKRSKTLFQTV-----------ETYQNASLVRLKLLTGRTHQIRVHMKAIGHP 246
Query: 396 IVGDSMY 402
I+GD MY
Sbjct: 247 IIGDYMY 253
>gi|452823350|gb|EME30361.1| ribosomal large subunit pseudouridine synthase A [Galdieria
sulphuraria]
Length = 270
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 75/200 (37%), Gaps = 44/200 (22%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRTTHQIDNCTEG 275
+ + E ++ ++KPA + G D + R L G T R H++D T G
Sbjct: 45 FLYIDEEYLAVNKPADVRMDGDFDV---TVTKLVYRKLESEKGTTRKPRFVHRLDYATSG 101
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
++ + S + RE+ V+K YLAL GW
Sbjct: 102 VLIAGLMDQSASYLAKLFRERLVEKFYLALV------------------------HGWTP 137
Query: 336 CQLEVMECKKVPWP--------DATVGKAYSIE----DCGWPSRDY-AYECKIKLLTGRT 382
C+ VME + P A GK+ E G Y + +K TGR
Sbjct: 138 CKKFVMEERIANHPVDGFMMTVSADRGKSAKTECVPLSFGIYGDHYLVTKVLLKPFTGRR 197
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R + G PIVGD+ Y
Sbjct: 198 HQLRVHMKYRGFPIVGDATY 217
>gi|357975814|ref|ZP_09139785.1| pseudouridylate synthase [Sphingomonas sp. KC8]
Length = 223
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ R++ + +V+DKPAG V D S G H++D T GC
Sbjct: 3 SDRVLFIDAEALVVDKPAGLPVTEVRDGSLSVENHLDSLRFGFQRRPAIVHRLDRDTSGC 62
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP-INIAPRLVSEGWYL 335
++LAR + ++ +V+K Y A+ + P+P P + ++ R GW +
Sbjct: 63 LLLARNPKAQKRYNAAFETGQVQKTYWAVVS-PVPADDSGTIDMPLLKVSTR--EAGWRM 119
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA-ACGA 394
+ + W E G +++ E TGRTHQ+R A GA
Sbjct: 120 IVDPRGKASRTHWRKLA-------EADGRALIEFSPE------TGRTHQIRVHAATGLGA 166
Query: 395 PIVGDSMY 402
PIVGD +Y
Sbjct: 167 PIVGDPIY 174
>gi|315038927|ref|YP_004032495.1| ribosomal protein large subunit [Lactobacillus amylovorus GRL 1112]
gi|385818132|ref|YP_005854522.1| ribosomal protein large subunit [Lactobacillus amylovorus GRL1118]
gi|312277060|gb|ADQ59700.1| ribosomal protein large subunit [Lactobacillus amylovorus GRL 1112]
gi|327184070|gb|AEA32517.1| ribosomal protein large subunit [Lactobacillus amylovorus GRL1118]
Length = 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 48/200 (24%)
Query: 220 IIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+I ++ ++++K G TD CAT+ LG ++P H++D T G
Sbjct: 83 VIYEDDNLLIINKKKGQKTHPNLNETDTALNDCATY----LG-SSPY-IVHRLDMLTGGL 136
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT----------TAPLPVGIMTHYMRPINIAP 326
+++A+ I +R++ K + YLA T LP+G P +
Sbjct: 137 LLVAKNPAVVPILNRELTTKTFHREYLAKVIHADKLKKNGTIDLPIG-----QDPDDQRK 191
Query: 327 RLVSE-GWY-LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQ 384
R+V++ G + + E++ K YS D K+ L TGRTHQ
Sbjct: 192 RMVNKTGLHAVTHYELL-------------KKYS---------DNTALVKLTLETGRTHQ 229
Query: 385 VRAQLAACGAPIVGDSMYMP 404
+R LAA G PIVGD +Y P
Sbjct: 230 IRVHLAAIGCPIVGDPLYNP 249
>gi|254994901|ref|ZP_05277091.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Mississippi]
Length = 296
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQE 284
+ ++KPAG SV G + L P R H++D T G +VLAR +
Sbjct: 99 IAINKPAGVSVQGGS-----KVKVSIDDVLDKIKPGECCRIVHRLDKDTSGVLVLARNLD 153
Query: 285 YCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
R+ RE++VKK Y+A+T P P PI R + G + + E
Sbjct: 154 VARYLAREFRERRVKKEYIAVTRGVPQPAS--GEVSTPIFYKVRSAT-GESMIEKE---- 206
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAPIVGDS 400
K + + +C + LL TGR HQ+R ++ G PIVGD+
Sbjct: 207 ----------AKTF------FSVMRILGDCAVVLLRPVTGRKHQLRIHMSQIGCPIVGDN 250
Query: 401 MYMPAAIAQ 409
Y +A+
Sbjct: 251 KYHKCDLAE 259
>gi|384449336|ref|YP_005661938.1| RNA pseudouridine synthase family protein [Chlamydophila pneumoniae
LPCoLN]
gi|269303280|gb|ACZ33380.1| RNA pseudouridine synthase family protein [Chlamydophila pneumoniae
LPCoLN]
Length = 283
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
I E + + T T H++D T GC+++ ++++ + + +++K+ K Y+A
Sbjct: 82 IYEKPPHLTTEQMAHMTRFFTVHRLDKGTSGCLLMGKSKQAATELMKLFKQRKIHKQYMA 141
Query: 305 LTTA--PLPVGIMTHYMRPIN-------IAPRLVSEGWYLCQLEVMECKKVPWPDATVGK 355
L G + Y P+ S+G +L + E W K
Sbjct: 142 LVFGHPKKKFGTVKSYTAPVYRRCGAVIFGAASPSQG----KLTITE-----WSVLDSYK 192
Query: 356 AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
YS+ C K +TGRTHQ+R Q+ G PIVGD Y P
Sbjct: 193 RYSLMLC-------------KPITGRTHQIRLQMGLLGHPIVGDVDYGP 228
>gi|261364850|ref|ZP_05977733.1| ribosomal large subunit pseudouridine synthase [Neisseria mucosa
ATCC 25996]
gi|288566895|gb|EFC88455.1| ribosomal large subunit pseudouridine synthase [Neisseria mucosa
ATCC 25996]
Length = 332
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAG +V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGVAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H IR KK+YLAL LP H P + ++G + +
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLPNDSF-HVKLP--LFKYTGAQGEKMVR-- 210
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + V +S + + + L TGRTHQ+R L + PI GD
Sbjct: 211 VSEDGQSAHTIFHVLNRFSDDLLHQVGLSHLTLVQATLKTGRTHQIRVHLQSQQCPIAGD 270
Query: 400 SMY 402
Y
Sbjct: 271 ERY 273
>gi|349610413|ref|ZP_08889763.1| hypothetical protein HMPREF1028_01738 [Neisseria sp. GT4A_CT1]
gi|348610012|gb|EGY59720.1| hypothetical protein HMPREF1028_01738 [Neisseria sp. GT4A_CT1]
Length = 332
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAG +V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGIAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H IR KK+YLAL LP H P + ++G + +
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLPNDSF-HVKLP--LFKYTGAQGEKMVR-- 210
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + V +S + + + L TGRTHQ+R L + PI GD
Sbjct: 211 VSEDGQSAHTIFRVLNRFSDDLLHQVGLSHLTLVQATLKTGRTHQIRVHLQSQQCPIAGD 270
Query: 400 SMY 402
Y
Sbjct: 271 ERY 273
>gi|31794480|ref|NP_856973.1| hypothetical protein Mb3328c [Mycobacterium bovis AF2122/97]
gi|31620076|emb|CAD95420.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
Length = 305
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 48/226 (21%)
Query: 192 IVEAGTYLR----VHVH---PKRFPRCYDI---DWNSRIIAVTESHVVLDKPAGTSVGGT 241
+V++GT L VH++ P P +D+ ++ I+ V + H + P G
Sbjct: 56 VVDSGTVLPPGSVVHLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGR----- 110
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE----YCSIFHRKIREKK 297
++ ++ R LGL L H++D T G ++ +E Y ++F R +
Sbjct: 111 --HVAQTALVRLRRELGLPE-LSPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGL---- 163
Query: 298 VKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK-KVPWPDATVGKA 356
V+K YLA AP+ G+ P + R+V +L + C+ VP + V +
Sbjct: 164 VRKTYLA--RAPVAPGLAL----PRLVRSRIVKRRGHLQAV----CEPGVPNAETLVERI 213
Query: 357 YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+RD Y ++ TGRTHQ+R +AA G PI+GD +Y
Sbjct: 214 ---------ARDGLY--RLTPTTGRTHQLRVHMAALGIPIMGDPLY 248
>gi|383936427|ref|ZP_09989853.1| 23S rRNA pseudouridine955/2504/2580 synthase [Rheinheimera
nanhaiensis E407-8]
gi|383702491|dbj|GAB59944.1| 23S rRNA pseudouridine955/2504/2580 synthase [Rheinheimera
nanhaiensis E407-8]
Length = 317
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALG-LTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP+G +V G + + A RAL L L H++D T GC+++A+ +
Sbjct: 103 IVLNKPSGMAVHGGSG--LQFGVIEALRALRPLAKHLELVHRLDRDTSGCLLIAKKRSVL 160
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN--IAPRLVSEGWYLCQLEVMECK 344
+ H ++R K V+K Y AL G + +R + + + G + +++ + K
Sbjct: 161 THLHEQLRNKTVEKKYWALVA-----GDWDNKVRKVTEPLKKNTLQSGERVVRVDEQDGK 215
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
P T + G + +TGRTHQ+R A G PI D Y
Sbjct: 216 ----PSETRFRILQRYQQGTLVEAFP-------VTGRTHQIRVHTACKGHPIACDDKYGD 264
Query: 405 AAI-AQLSSPGLN 416
AQ+ GLN
Sbjct: 265 NVFTAQMQQLGLN 277
>gi|343491944|ref|ZP_08730323.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
columbinum SF7]
gi|343128398|gb|EGV00200.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
columbinum SF7]
Length = 308
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCA---TFASRALGLTTPLRTT 266
+ N I+ + V+++KP V G D + S GL P
Sbjct: 72 VQMNLDIVYEDDDLVIINKPTNLVVHPAPGHYNDTLVNGLLYHFKTLSNENGLLRP-GIV 130
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H+ID T G +++A+ E ++ +++ ++K+ Y+A+ + GI+ H IN+
Sbjct: 131 HRIDKDTSGLLIIAKNNEIHNLLSEMLKKHEIKRSYIAIAS-----GILKHKQMRINLPL 185
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
L +EV + K + + K + I+ + +C ++ TGRTHQ+R
Sbjct: 186 NRHRTDRKL--IEVNKNGKEAITNVKLLKTFYIDKKPYS----LVQCDLE--TGRTHQIR 237
Query: 387 AQLAACGAPIVGDSMY 402
LA P+ GD+ Y
Sbjct: 238 VHLAYLKHPVYGDATY 253
>gi|354544628|emb|CCE41353.1| hypothetical protein CPAR2_303420 [Candida parapsilosis]
Length = 581
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 52/284 (18%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + +V+DKP+G T + +G T + +++D T G +
Sbjct: 167 KIVFENDELLVIDKPSGIPAHPTGRYRYNTITKILQHDMGKT--VHPCNRLDRLTSGLMF 224
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR----LVSEGWY 334
L +T + + ++IR++ V K Y+A P +T ++P+ +V E
Sbjct: 225 LGKTAQGSNDLMKQIRDRNVSKEYIARVKGQFPTTNLTIDKPLYTLSPKHTLNVVDEKQ- 283
Query: 335 LCQLEVMECKKV---PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ V E K+V P D +V K + LTGRTHQ+R L
Sbjct: 284 -GKEAVTEFKRVSYDPVTDTSVVKCHP-------------------LTGRTHQIRVHLQY 323
Query: 392 CGAPIVGDSMYMPAAI--AQLSSPG----------LNPFGKCQKEYA---SDDDKEMAVI 436
G PI D +Y I QL G L+ GK + + ++D E+
Sbjct: 324 IGYPIANDPIYSNPYIWGDQLGKDGNANYLEVISKLDSIGKTRAASSWIHPEEDGEVLSN 383
Query: 437 EWISQHGM----EP---SVAIGLQACHISWDDGECCYEARSPWW 473
E G+ +P + + L A DDG Y+ P W
Sbjct: 384 EICPHTGLPLYTDPGFNDLELWLHAYSYKADDGSWSYKTEYPEW 427
>gi|427391437|ref|ZP_18885843.1| hypothetical protein HMPREF9233_01346 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732080|gb|EKU94892.1| hypothetical protein HMPREF9233_01346 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 331
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E + +DKPAG + ++ ++ T A+R ++ H++D T G ++L
Sbjct: 111 VLGRGEHWIAVDKPAGLASTPQGSHVAQTV-TVAARRQFANDAIQVAHRLDRLTAGVMLL 169
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
++E+ + V+K Y A+ APL + R W Q+
Sbjct: 170 VTSKEWRGAYQSLFESGAVRKTYQAV--APL--------------SARFSRGRWQRVQVR 213
Query: 340 VMECKKVPWPDATVGKAYSIED--------CGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
+ + T G A +I D R YE ++ LTGRTHQ+R +
Sbjct: 214 ITKPSGSLRAQVTSGAANAITDVRLARQVRADGGERRGIYE--LRPLTGRTHQLRCTMEY 271
Query: 392 CGAPIVGDSMY 402
API GD +Y
Sbjct: 272 LDAPICGDPLY 282
>gi|56416692|ref|YP_153766.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale
str. St. Maries]
gi|222475057|ref|YP_002563472.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Florida]
gi|255003036|ref|ZP_05278000.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Puerto Rico]
gi|255004159|ref|ZP_05278960.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Virginia]
gi|56387924|gb|AAV86511.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale
str. St. Maries]
gi|222419193|gb|ACM49216.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Florida]
Length = 296
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 29/186 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQE 284
+ ++KPAG SV G + L P R H++D T G +VLAR +
Sbjct: 99 IAINKPAGVSVQGGS-----KVKVSIDDVLDKIKPGECCRIVHRLDKDTSGVLVLARNLD 153
Query: 285 YCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMEC 343
R+ RE++VKK Y+A+T P P PI +Y + E
Sbjct: 154 VARYLAREFRERRVKKEYIAVTRGVPQPAS--GEVSTPI----------FYKVRSATGES 201
Query: 344 KKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYM 403
+ DC ++ +TGR HQ+R ++ G PIVGD+ Y
Sbjct: 202 MIEKEAKTFFSVMRILGDCAV--------VLLRPVTGRKHQLRIHMSQIGCPIVGDNKYH 253
Query: 404 PAAIAQ 409
+A+
Sbjct: 254 KCDLAE 259
>gi|325911610|ref|ZP_08174018.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|325476596|gb|EGC79754.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
Length = 292
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 45/188 (23%)
Query: 228 VVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPAG TD CA + LG + + H++D T G +++A+
Sbjct: 101 LVINKPAGQKTHPNLYETDTALNDCANY----LGYSPYI--VHRLDMLTNGLLLVAKNPA 154
Query: 285 YCSIFHRKIREKKVKKLYLALT----------TAPLPVGIMTHYMRPINIAPRLVSEGWY 334
I ++++ +K + + Y A T LP+G P+++ R+V
Sbjct: 155 VVPILNKQLIDKTLSRSYFAWIEATNDISDNGTINLPIG-----DDPLDMRKRMVRADGL 209
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
KK+ G + K++L TGRTHQ+R LAA G
Sbjct: 210 KAITHYQVVKKI-------GSKILV--------------KLQLETGRTHQIRVHLAAIGH 248
Query: 395 PIVGDSMY 402
PI+GD +Y
Sbjct: 249 PIIGDPLY 256
>gi|381188410|ref|ZP_09895972.1| RNA pseudouridylate synthase, group 1 [Flavobacterium frigoris PS1]
gi|379650198|gb|EIA08771.1| RNA pseudouridylate synthase, group 1 [Flavobacterium frigoris PS1]
Length = 229
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H++D T G VV ART + + + + ++ +K Y A+ +P
Sbjct: 60 LGVVHRLDRPTTGIVVFARTSKALTRLNELFKNRETQKTYWAIVKN-----------KPE 108
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
A +LV ++ + E K + K S++ + + + +I L TGR
Sbjct: 109 KSADKLVH---FIKRNEKNNTSKAHIKEVPDSKLASLDYTIFKELNNYFALEINLHTGRH 165
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+RAQL+A G+ I GD Y
Sbjct: 166 HQIRAQLSAIGSAIKGDLKY 185
>gi|341820298|emb|CCC56553.1| pseudouridylate synthase, 23S RNA-specific [Weissella thailandensis
fsh4-2]
Length = 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 32/195 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N ++ V ++ V P GT N ++ + + H++D T G
Sbjct: 91 NDDLLVVNKTKGVKTHPNSPGEDGTMMNFAQAYLIKQGKRAYMV------HRLDGQTTGA 144
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLVSEGWY 334
+++A+ + ++ + +K +K+ YLA L P G + PI P
Sbjct: 145 LIIAKVPYVVPMLNQLLHDKTIKRTYLAWVDGHLTQPTGTIN---LPIGEHP----TNSR 197
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE---CKIKLLTGRTHQVRAQLAA 391
L Q+ + K P T W Y+ +++L TGRTHQ+R +AA
Sbjct: 198 LRQINGINAK----PAVT----------HWTKIKTVYQQTLVRLQLETGRTHQIRLHMAA 243
Query: 392 CGAPIVGDSMYMPAA 406
G P+VGD +Y P +
Sbjct: 244 IGHPLVGDDLYNPQS 258
>gi|359457301|ref|ZP_09245864.1| RluA family pseudouridine synthase [Acaryochloris sp. CCMEE 5410]
Length = 328
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 31/224 (13%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLDKPAG------------TSVG 239
++ G + VH+ P P + + I ++H+ +++KPAG T V
Sbjct: 54 LQIGDQVEVHI-PAPQPLALEPELMDLEILFEDAHLLIVNKPAGLVVHPAPGHATGTLVH 112
Query: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
G + +E T S G+ P H++D T G V++A+T + +I K
Sbjct: 113 GLLAHCQEGQGTTLSGIGGVERP-GIVHRLDKDTTGAVMVAKTDQAHQHLQAQIAAKTAL 171
Query: 300 KLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSI 359
+ Y+ L Y RP + R+ + + + K P GKA
Sbjct: 172 REYVGLV-----------YGRPSALTGRM---EFPIGRHRSDRIKMAVVPVEQGGKAAVT 217
Query: 360 E-DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P +YA K +L TGRTHQ+R A G PIVGD +Y
Sbjct: 218 HWQILQPLGNYAL-VKFRLETGRTHQIRVHCAQMGWPIVGDPLY 260
>gi|410080736|ref|XP_003957948.1| hypothetical protein KAFR_0F02160 [Kazachstania africana CBS 2517]
gi|372464535|emb|CCF58813.1| hypothetical protein KAFR_0F02160 [Kazachstania africana CBS 2517]
Length = 614
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
++D IV G+ + H P I +I+ + +V+DKP+G V T
Sbjct: 159 NIDTIVRNGSLISHKAHRHEPPV---IAKPIKIVYQDDDLLVIDKPSGIPVHPTGRYRFN 215
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
S + LG + +++D T G + LA+T + +++ ++V+K Y+A
Sbjct: 216 SVTKMLEKQLGFA--VHPCNRLDKLTSGLMFLAKTPKGADEMGDQLKVREVRKEYIARVV 273
Query: 308 APLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR 367
PV ++ M P++ +C +E + T+ K S + R
Sbjct: 274 GEFPVEEISVDMPLRTFDPKVALN--VVCSMEDEGARHA----KTIFKRISFD-----GR 322
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
CK LTGR HQ+R L G PI D +Y
Sbjct: 323 TSVVRCKP--LTGRQHQIRVHLQYLGFPIANDPIY 355
>gi|399075066|ref|ZP_10751375.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
gi|398039685|gb|EJL32814.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
Length = 358
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 24/191 (12%)
Query: 228 VVLDKPAGTSV--------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+V+DKPAG + G + + C S G+ P H++D T G +V
Sbjct: 129 IVIDKPAGMAAHPAPGCETGTLVNALLHHCGDSLSGIGGVARP-GIVHRLDKETSGVMVA 187
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT-TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A+T E + ++YLALT AP PV + T I RL G
Sbjct: 188 AKTDAAHQGLSALFAEHDIDRMYLALTRGAPHPV-VGT-------IQTRL---GRSPGDR 236
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPS-RDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
+ M K +AT Y +E P+ + A +L TGRTHQ+R +A+ G+P +
Sbjct: 237 KKMAVLKSGGREATT--HYRVEKTFGPAAKPLAARVACRLETGRTHQIRVHMASRGSPCL 294
Query: 398 GDSMYMPAAIA 408
GD +Y A A
Sbjct: 295 GDPVYGAGAPA 305
>gi|386346156|ref|YP_006044405.1| pseudouridine synthase [Spirochaeta thermophila DSM 6578]
gi|339411123|gb|AEJ60688.1| pseudouridine synthase [Spirochaeta thermophila DSM 6578]
Length = 300
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 32/211 (15%)
Query: 200 RVHVH----PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATF 252
R+H+ P+R P+ + I+ T+ ++L+KP G V G TD +
Sbjct: 61 RIHIDRSLLPERKPQQKGKASSLPILLETDHLLILNKPPGAVVHGPGSLTDQVRSYLKDR 120
Query: 253 ASRALGLT-TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+L T +PL H++D T G +V +R+ F + +RE +++K YLAL L
Sbjct: 121 IPPSLAFTPSPL---HRLDRLTSGILVFSRSIHGARWFTQALREGRIEKTYLALLEGTL- 176
Query: 312 VGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAY 371
P L EG + P P P+
Sbjct: 177 -------AEPARWEDLLTREG----------RRSRPSPHGRPALTDVRPLLAAPTATLVL 219
Query: 372 ECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
C I TGR HQ+R Q A G P++GD+ Y
Sbjct: 220 -CTIH--TGRMHQIRVQAALRGHPLLGDTAY 247
>gi|303249693|ref|ZP_07335898.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651505|gb|EFL81656.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 321
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 200
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 201 NE---LASGERIVRVSEEGKPSET---RFSIEE------RYANATLVKASPVTGRTHQIR 248
Query: 387 AQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A +++ + GL
Sbjct: 249 VHTQYAGHPIALDDKYGEAEFDSKMKAAGLQ 279
>gi|402552196|ref|YP_006600914.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6320]
gi|401800891|gb|AFQ04206.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6320]
Length = 330
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGT--------SVGGTTDNIEESCA--TFASRALGLTTPLRTTHQ 268
+II E+ +V+DKP G S+ ++ + + C F S L H+
Sbjct: 96 KIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF--AHR 153
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPR 327
ID T G V+ A+T + ++ + + K Y L +G+ T Y + N
Sbjct: 154 IDRNTSGIVMGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHLGLQTAYWKKDN---- 209
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ G ++ K P+P+A + E+ + ++ I+L++GRTHQ+RA
Sbjct: 210 --NNG-------IVTVKWKPFPEAKKISTF-FENSSYIAQKDMSLITIRLISGRTHQIRA 259
Query: 388 QLAACGAPIVGDSMY 402
L +VGD Y
Sbjct: 260 CLNLFSNQLVGDKKY 274
>gi|303252739|ref|ZP_07338900.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302648389|gb|EFL78584.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
Length = 321
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 200
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 201 NE---LASGERIVRVSEKGKPSET---RFSIEE------RYANATLVKASPVTGRTHQIR 248
Query: 387 AQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A +++ + GL
Sbjct: 249 VHTQYAGHPIALDDKYGEAEFDSKMKAAGLQ 279
>gi|297198479|ref|ZP_06915876.1| ribosomal pseudouridine synthase [Streptomyces sviceus ATCC 29083]
gi|197717376|gb|EDY61410.1| ribosomal pseudouridine synthase [Streptomyces sviceus ATCC 29083]
Length = 317
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I E VV DKP + ++ E+ R L + L H++D T G V+
Sbjct: 99 VIYRDEHLVVADKPHFLATTPRGSHVAETALARLRRQLDIPA-LGAAHRLDRLTAGLVMF 157
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT----TAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
E + R+++V K Y A+ T PLP H +R R+V E L
Sbjct: 158 TVRPEERGAYQSLFRDRRVAKEYEAVARYDPTLPLP-----HTVRS-----RIVKERGVL 207
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
EV P+A V + +E G +R ++ TG+THQ+R ++A G P
Sbjct: 208 AAQEVDGE-----PNA-VSRVELLEHRGERAR-----YRLTPGTGQTHQLRVHMSALGVP 256
Query: 396 IVGDSMY 402
I+GD +Y
Sbjct: 257 ILGDPLY 263
>gi|331697825|ref|YP_004334064.1| pseudouridine synthase [Pseudonocardia dioxanivorans CB1190]
gi|326952514|gb|AEA26211.1| pseudouridine synthase [Pseudonocardia dioxanivorans CB1190]
Length = 309
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 31/242 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E +V+DKP S ++ E+ R L L L H++D T G ++
Sbjct: 93 VVHRDEHLLVVDKPHFLSTIPRGRHVVETALVRLRRDLDLPE-LSPAHRLDRVTAGLLMF 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
+E + R+++V K Y A+ AP ++ P + R+V E + E
Sbjct: 152 VVRREDRGAYQTMFRDRRVAKTYEAI--APHDPALLL----PRTVTSRIVKERGIIVARE 205
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V D +E RD ++ TGRTHQ+R +AA PI+GD
Sbjct: 206 V---------DGPPNAETYVELVE--HRDGLGRYRLTPATGRTHQLRLHMAALNVPILGD 254
Query: 400 SMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISW 459
Y +L L+ + + + A + +A + ++ + + LQA W
Sbjct: 255 HFY-----PELHDKPLDDYTRPLQLLA----RTLAFTDPLTGENRRFTSTLALQA----W 301
Query: 460 DD 461
DD
Sbjct: 302 DD 303
>gi|296420214|ref|XP_002839670.1| pseudouridine synthase [Tuber melanosporum Mel28]
gi|295635864|emb|CAZ83861.1| unnamed protein product [Tuber melanosporum]
Length = 456
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KPAG V + PL +++D T G + +A+T E +
Sbjct: 197 IVINKPAGVPVHPAGRYNFNTVIEIMKHDYNGHAPL-PCNRLDRLTSGLMFMAKTPEAAN 255
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL-VSEGWYLCQLEVMECKKV 346
F +++ + +KK YLA P G +T ++++P+L ++ + K++
Sbjct: 256 DFMGQLQTRTIKKQYLARVKGKFPAGEVTCSQPILSVSPKLGLNRVRASGKTAKTLFKRL 315
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ K YSI +C TGRTHQ+R L G PI+ D +Y
Sbjct: 316 KY---NTEKNYSIVEC-------------HPFTGRTHQIRVHLQFLGHPIINDPIY 355
>gi|395239229|ref|ZP_10417120.1| Ribosomal large subunit pseudouridine synthase [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394476651|emb|CCI87097.1| Ribosomal large subunit pseudouridine synthase [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 290
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
TD CAT+ + +P H++D T G +++A+ +R++ K K+
Sbjct: 108 TDTALNDCATYLN-----ASPF-IVHRLDMLTRGLLLVAKNPAVVPSLNRQLITKNFKRD 161
Query: 302 YLALTTAPLPVGIMTHYMRPINIAPRLVSEG---WYLCQLEVMECKKVPWPDATVGKAYS 358
YLA+ P +L+S+G + + Q + K+ PD KA +
Sbjct: 162 YLAIVANP----------------HKLLSKGTISFPIAQDPTDQRKRCIAPDGL--KAIT 203
Query: 359 IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
A K+ L TGRTHQ+R LAA G PI+GD +Y
Sbjct: 204 HYQVLQKDATQAL-IKLSLETGRTHQIRVHLAAIGCPIIGDPLY 246
>gi|377557368|ref|ZP_09787018.1| Pseudouridine synthase [Lactobacillus gastricus PS3]
gi|376165774|gb|EHS84715.1| Pseudouridine synthase [Lactobacillus gastricus PS3]
Length = 301
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCAT-FASRALGLTTPLRTTH---QIDNCTE 274
I+ +V++KPAG +V + S L P + TH ++D T
Sbjct: 80 IVYEDRDFLVVNKPAGVATVPAHNVPVHNSLVNRLKGYYLRQQYPNQVTHVATRLDRDTS 139
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMRPINIAPRLVSEG 332
G VV + + ++ +++++ +V K YLA+ +P G++ M PI P
Sbjct: 140 GLVVFPKHRFAHAVLDQQLKQHQVTKRYLAIVQGKVPAKHGVI---MAPIRRDPA----- 191
Query: 333 WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
Q +V A GK E D +I L +GRTHQ+R +
Sbjct: 192 -SFVQRQV----------ARDGKMSITEYWAQEMTDAKTVVRIALHSGRTHQIRVHFQSI 240
Query: 393 GAPIVGDSMYMPAA 406
G P++GD MY A+
Sbjct: 241 GHPLIGDDMYGQAS 254
>gi|395804256|ref|ZP_10483497.1| pseudouridine synthase [Flavobacterium sp. F52]
gi|395433900|gb|EJF99852.1| pseudouridine synthase [Flavobacterium sp. F52]
Length = 229
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L H++D T G VV ART + S + ++ KK Y A+ +P
Sbjct: 60 LGVIHRLDRPTTGIVVFARTSKALSRMNELFSNRETKKTYWAVVKN-----------KPR 108
Query: 323 NIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRT 382
+ +LV YL + E K + K S++ +I L TGR
Sbjct: 109 EASAKLVH---YLKRNEKNNTSKAHSKEVPDSKLASLDYTIIKELQNYTALEINLHTGRH 165
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+RAQL+A G+PI GD Y
Sbjct: 166 HQIRAQLSAIGSPIKGDLKY 185
>gi|336415189|ref|ZP_08595530.1| hypothetical protein HMPREF1017_02638 [Bacteroides ovatus
3_8_47FAA]
gi|335941222|gb|EGN03080.1| hypothetical protein HMPREF1017_02638 [Bacteroides ovatus
3_8_47FAA]
Length = 223
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMR 320
L TH++D G V+ A+T + + + R +VKK Y A+ AP P G + H++
Sbjct: 51 LGVTHRLDRPVSGLVIFAKTSKALTRLNEMFRTSEVKKTYWAVVKNAPQEPEGELVHFL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK +G S +Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDKEVPNSKKAILHYRLIGH----------SENY-YLLEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
R HQ+R QLA G PI GD Y SP NP G
Sbjct: 155 RHHQIRCQLAKMGCPIKGDLKY--------GSPRSNPDG 185
>gi|307248951|ref|ZP_07530961.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306854562|gb|EFM86755.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 98 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 151
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 152 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 205
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 206 NE---LASGERIVRVSEKGKPSET---RFSIEE------RYANATLVKASPVTGRTHQIR 253
Query: 387 AQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A +++ + GL
Sbjct: 254 VHTQYAGHPIALDDKYGEAEFDSKMKAAGLQ 284
>gi|151945568|gb|EDN63809.1| DRAP deaminase [Saccharomyces cerevisiae YJM789]
gi|256273956|gb|EEU08875.1| Rib2p [Saccharomyces cerevisiae JAY291]
gi|323303146|gb|EGA56948.1| Rib2p [Saccharomyces cerevisiae FostersB]
gi|323307078|gb|EGA60361.1| Rib2p [Saccharomyces cerevisiae FostersO]
Length = 591
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>gi|418695408|ref|ZP_13256428.1| RNA pseudouridine synthase [Leptospira kirschneri str. H1]
gi|421108050|ref|ZP_15568594.1| RNA pseudouridine synthase [Leptospira kirschneri str. H2]
gi|409956862|gb|EKO15783.1| RNA pseudouridine synthase [Leptospira kirschneri str. H1]
gi|410006751|gb|EKO60488.1| RNA pseudouridine synthase [Leptospira kirschneri str. H2]
Length = 293
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N +I +ES ++ +KP G V T D+ E+ + L L LRT +++D T G
Sbjct: 6 NIKIFYESESFLLAEKPPGIPVHATKDSKRENFTDQLQKQLSLEY-LRTVNRLDLDTSGL 64
Query: 277 VVL----ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH--YMRPINIAPRLVS 330
V + +E I + K+YL +T+ +P T Y++ N R V
Sbjct: 65 VFFCKNPNKNKEADQILKNSL------KIYLCVTSGVIPEKHFTETCYIKDGNKKVRKVF 118
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
G E + K+ + +V A KL TG+ HQ+R L+
Sbjct: 119 SGGDKAVTEFLTLKQNSKENYSVLLA-------------------KLHTGKRHQIRFHLS 159
Query: 391 ACGAPIVGDSMY 402
G PI+GD +Y
Sbjct: 160 EKGYPILGDCVY 171
>gi|351728624|ref|ZP_08946315.1| pseudouridine synthase [Acidovorax radicis N35]
Length = 209
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPIN 323
H++D T G V++AR + +++V K YLA+ + P GI PI
Sbjct: 46 VHRLDQATSGLVLMARHADAQRRLSLAFEQRQVHKRYLAVVQGLVAEPPGIWADIHLPI- 104
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGR 381
+ W L ++ DA GK A +++L +TGR
Sbjct: 105 ------AADWERRPLRII--------DALQGKPSHTRWRTLAHNTAAGTTRVELEPVTGR 150
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGL 415
THQ+R LAA G PI+GD++Y AA Q +P L
Sbjct: 151 THQLRVHLAALGHPILGDALYADAAT-QAQAPRL 183
>gi|349581103|dbj|GAA26261.1| K7_Rib2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 591
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>gi|375089014|ref|ZP_09735350.1| RluA family pseudouridine synthase [Dolosigranulum pigrum ATCC
51524]
gi|374560815|gb|EHR32168.1| RluA family pseudouridine synthase [Dolosigranulum pigrum ATCC
51524]
Length = 299
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 33/194 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-FASRALGLTTPLRTTH---QIDNCTEG 275
I+ E+ +V++KP G + + ++ E++ A+ P + H ++D T G
Sbjct: 79 ILYEDEALLVVNKPCGVASVPSPEHREDTMVNRVAAYISNKAYPHQAVHVVTRLDRETSG 138
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPI-----NIAPRL 328
++ A+ ++ +++R++ + KLY+A+ + GI+T PI +I R+
Sbjct: 139 VMLFAKNGFIHALMDQQLRKRTLDKLYVAVVEGQVTPDYGILTF---PIGRSQESIIERI 195
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
V D+ GK E R + +KL TGRTHQ+R
Sbjct: 196 VD-------------------DSDAGKPAKTEYWVREVRKHLSVVDVKLWTGRTHQIRVH 236
Query: 389 LAACGAPIVGDSMY 402
A G P+VGD +Y
Sbjct: 237 FAHIGHPLVGDDLY 250
>gi|347731921|ref|ZP_08865007.1| RNA pseudouridylate synthase family protein [Desulfovibrio sp. A2]
gi|347519390|gb|EGY26549.1| RNA pseudouridylate synthase family protein [Desulfovibrio sp. A2]
Length = 430
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 78/203 (38%), Gaps = 26/203 (12%)
Query: 217 NSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+ R++A + V L KP G G N+E + R +++D
Sbjct: 168 SPRVLAEADGLVALYKPGGQHSAAIAGSAAPNVEARLPALLGKGPEHEGFPRLLNRLDGP 227
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIA----- 325
T G ++ ART + FH +V K YLAL L PV M + N A
Sbjct: 228 TSGILLAARTPQAAQRFHAAEDSGQVSKTYLALVHGTLEQPV-TMRRALDTANRATTRVL 286
Query: 326 ------PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
P +E L +++ M +AT G + C C I+
Sbjct: 287 PDDTPDPLRHTEVMPLGEMDAMGAAPPCGENATAGASQPNTPCTL------VRCVIR--K 338
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
G HQ+RA LAA G PIVGD Y
Sbjct: 339 GARHQIRAHLAALGHPIVGDLRY 361
>gi|315634204|ref|ZP_07889493.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
segnis ATCC 33393]
gi|315477454|gb|EFU68197.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
segnis ATCC 33393]
Length = 226
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 27/187 (14%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ +V++KP G SV D+ + ++ LG+ + H++D T G ++
Sbjct: 4 QIVFRHSDFIVINKPNGISV--HKDDADVGLTQLVAQQLGVP-KVWLVHRLDKVTSGLLI 60
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LA + +K + +++K Y+AL T P + A R W LCQ
Sbjct: 61 LALNERAAVTLSQKFAQHQIQKTYIALATHK-PKKKQGRISGDMQKARRGT---WKLCQ- 115
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL---TGRTHQVRAQLAACGAP 395
K+ P ++ D + S A ++ +L TG+THQ+R + + G+P
Sbjct: 116 ----SKENP----------AVTD--FVSHSLAPNLRLFILQPKTGKTHQLRVAMKSLGSP 159
Query: 396 IVGDSMY 402
I+GD +Y
Sbjct: 160 ILGDELY 166
>gi|190407280|gb|EDV10547.1| DRAP deaminase [Saccharomyces cerevisiae RM11-1a]
Length = 591
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>gi|6324506|ref|NP_014575.1| bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2
[Saccharomyces cerevisiae S288c]
gi|2501674|sp|Q12362.1|RIB2_YEAST RecName: Full=Bifunctional protein RIB2; Includes: RecName:
Full=tRNA pseudouridine(32) synthase, cytoplasmic;
AltName: Full=tRNA pseudouridine synthase 8; AltName:
Full=tRNA pseudouridylate synthase 8; AltName:
Full=tRNA-uridine isomerase 8; Includes: RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase
gi|642221|emb|CAA79742.1| DRAP deaminase [Saccharomyces cerevisiae]
gi|1419887|emb|CAA99076.1| RIB2 [Saccharomyces cerevisiae]
gi|285814824|tpg|DAA10717.1| TPA: bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2
[Saccharomyces cerevisiae S288c]
gi|392296765|gb|EIW07867.1| Rib2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 591
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>gi|189426227|ref|YP_001953404.1| pseudouridine synthase [Geobacter lovleyi SZ]
gi|189422486|gb|ACD96884.1| pseudouridine synthase, RluA family [Geobacter lovleyi SZ]
Length = 295
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGC 276
I+ + + ++KP+G + T ++ + + + G+ P+R H++D T G
Sbjct: 80 IVYQDKELLAINKPSGIASQRTPYQLKGTLEYWVAEEFVRQGIKEPVRVVHRLDRGTSGL 139
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
++ + ++ + ++ ++K YLAL T +P V E W C
Sbjct: 140 MLFPKHRQAAAWLSELFKQGGIQKRYLALVTG-----------KP-------VEERWS-C 180
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ + W + G+A + + + + TGRTHQ+R L+A G PI
Sbjct: 181 DGPIGKLGSARWGIMSEGRAALTDFRLLAAAEGLALVEAFPRTGRTHQIRVHLSAAGLPI 240
Query: 397 VGDSMY 402
VGD+ Y
Sbjct: 241 VGDATY 246
>gi|323331668|gb|EGA73082.1| Rib2p [Saccharomyces cerevisiae AWRI796]
gi|323335647|gb|EGA76930.1| Rib2p [Saccharomyces cerevisiae Vin13]
gi|323346638|gb|EGA80923.1| Rib2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352328|gb|EGA84863.1| Rib2p [Saccharomyces cerevisiae VL3]
gi|365763186|gb|EHN04716.1| Rib2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 591
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>gi|283770934|ref|ZP_06343826.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus H19]
gi|283461081|gb|EFC08171.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus H19]
Length = 273
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVNALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|190151234|ref|YP_001969759.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307246812|ref|ZP_07528878.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307251150|ref|ZP_07533072.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307253568|ref|ZP_07535436.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307255795|ref|ZP_07537597.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257984|ref|ZP_07539737.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307260247|ref|ZP_07541955.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307264584|ref|ZP_07546167.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189916365|gb|ACE62617.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306852283|gb|EFM84522.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306856816|gb|EFM88950.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858948|gb|EFM90993.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306861258|gb|EFM93250.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863531|gb|EFM95461.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865694|gb|EFM97574.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870113|gb|EFN01874.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 98 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 151
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 152 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 205
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 206 NE---LASGERIVRVSEEGKPSET---RFSIEE------RYANATLVKASPVTGRTHQIR 253
Query: 387 AQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A +++ + GL
Sbjct: 254 VHTQYAGHPIALDDKYGEAEFDSKMKAAGLQ 284
>gi|386774181|ref|ZP_10096559.1| 23S RNA-specific pseudouridylate synthase [Brachybacterium
paraconglomeratum LC44]
Length = 322
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 106/264 (40%), Gaps = 29/264 (10%)
Query: 157 FKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW 216
F + DP+ V +A+ R D V AG L H R R ++
Sbjct: 22 FPALADPAATPLAERFAAGEVVDARG--RAWAADDAVGAGDELWFH----RELRPEEVPA 75
Query: 217 NSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I + H+ V+DKP + ++ S R G+ L H++D T G
Sbjct: 76 EPLPILFRDEHLLVIDKPHDVATMPRGAHVLASALVRLRRDTGIEQ-LVPLHRLDRRTAG 134
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALT------TAPLPVGIMTHYM-----RPINI 324
+ E S + + ++V K Y AL T P VG R +
Sbjct: 135 VLAFGVRPEERSAYQQLFARREVDKRYAALVLPGPGCTLPQEVGERAELADRMEKRRGEL 194
Query: 325 APRLVSEGWYL-CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL----- 378
R+V +LEV+ + P D T G+A + ED PS + E + LL
Sbjct: 195 TARIVPGAPNAHTELEVLTARG-PGVDGT-GEAGTTEDG--PSGAGSAESRALLLGLRPR 250
Query: 379 TGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R QL++ GAPI G+ +Y
Sbjct: 251 TGRTHQLRLQLSSRGAPIAGEDLY 274
>gi|417301794|ref|ZP_12088930.1| dual specificity pseudouridine synthase for 23S rRNA and tRNAphe
modification (RluA-like) protein [Rhodopirellula baltica
WH47]
gi|327541913|gb|EGF28421.1| dual specificity pseudouridine synthase for 23S rRNA and tRNAphe
modification (RluA-like) protein [Rhodopirellula baltica
WH47]
Length = 214
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 20/181 (11%)
Query: 228 VVLDKPAG--TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
VV++KP G T+ TD++E ++A + L H++D G V++A ++
Sbjct: 12 VVVNKPVGLPTTSPKGTDSLESCLREQFAQAGNPVSYLTAVHRLDRPVSGLVLIALRKKA 71
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWY--LCQLEVMEC 343
+ + R + V+K Y+A+ N E W+ + +L
Sbjct: 72 ARLLSEQFRLRHVQKKYIAMVQG--------------NALEACKQEPWHDTIAKLTDEAR 117
Query: 344 KKVPWPDATVGKAYS--IEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
++ PD+T G+ + + S +++ +TGR HQ+R Q A G PIVGD +
Sbjct: 118 VEIVGPDSTDGRQAETKVSFLEYDSESDTSRIELRPVTGRMHQLRIQSAHRGHPIVGDPL 177
Query: 402 Y 402
Y
Sbjct: 178 Y 178
>gi|255994608|ref|ZP_05427743.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
saphenum ATCC 49989]
gi|255993321|gb|EEU03410.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
saphenum ATCC 49989]
Length = 322
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
T L T++++D TEG + +A+ + +E ++++ Y+A + + Y
Sbjct: 135 TFSLATSNRLDRNTEGLIAIAKNAASQRELNAAFKEGRIERYYVAEVVGEVRGDVTIDY- 193
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKK--VPWPDAT---VGKAYSI--EDCGWPSRDYAYE 372
P+ + + V K VP PD T + K + I ++ Y
Sbjct: 194 -PLYKSAK---------NNTVFADKDGSVP-PDVTKEAITKVHPIRVNRIDKNGSEFTYT 242
Query: 373 C-KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNP 417
++KLLTGRTHQ+R LAA G P+V D Y+ A +SS LNP
Sbjct: 243 VVRVKLLTGRTHQIRVHLAAIGHPLVNDRKYLK--YANVSSKYLNP 286
>gi|411001285|ref|ZP_11377614.1| ribosomal pseudouridine synthase [Streptomyces globisporus C-1027]
Length = 312
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E VV DKP + +I E+ R L L L+ H++D T G V+ E
Sbjct: 105 ERIVVADKPHFLATMPRGRHITETAVARLRRELELPA-LQPAHRLDRLTAGLVLFVVRPE 163
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ R+++V+K Y A+ AP G+ P + R+V E V+ +
Sbjct: 164 DRGAYQTLFRDRRVRKEYEAV--APYDPGVTL----PRTVRSRIVKE------RGVLAAR 211
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ P + + +E G R ++ TGRTHQ+R + A G PIV D +Y
Sbjct: 212 EEPGEANSESRVELVEHRGGVGR-----YRLLPATGRTHQLRVHMNALGLPIVHDPLY 264
>gi|383791200|ref|YP_005475774.1| 23S RNA-specific pseudouridylate synthase [Spirochaeta africana DSM
8902]
gi|383107734|gb|AFG38067.1| 23S RNA-specific pseudouridylate synthase [Spirochaeta africana DSM
8902]
Length = 399
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G V +++ F +++ ++ K YLA+ LP
Sbjct: 183 HRLDRNTSGIVCFSKSLAGARWFTESLQQNRIAKYYLAVLEGELP--------------- 227
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDC--GWPSR----DYAYECKIKLLTG 380
G++ L+ +E + +T G+A C G SR ++++TG
Sbjct: 228 ----PGYHEIWLDTLERRHHSTSLSTAGQAAETHICRLGTASRYQLPGLHTMTGVRIVTG 283
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
RTHQ+RAQ A G P++GD+ Y
Sbjct: 284 RTHQIRAQAAGHGHPVLGDAKY 305
>gi|410730249|ref|XP_003671304.2| hypothetical protein NDAI_0G02840 [Naumovozyma dairenensis CBS 421]
gi|401780122|emb|CCD26061.2| hypothetical protein NDAI_0G02840 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RI+ E +V+DKP+G V T + + +++D T G +
Sbjct: 134 RIVFENEGLLVIDKPSGIPVHPTGRFRFNTVTKILEEKYNYV--VHPCNRLDRSTSGLMF 191
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
LA+T + ++RE++V K Y+A P G + +PI R VS +C +
Sbjct: 192 LAKTPKGADDMAIQLREREVTKEYVARVVGNFPSGEII-VDKPIRSVNRKVSLN-AVCDI 249
Query: 339 EVMECKKVPWPDATVGKAYSI-EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIV 397
D A +I E + + +CK LTGRTHQ+R L G PI
Sbjct: 250 ----------TDEDAKNAKTIFEKISYDGQTSVVKCK--PLTGRTHQIRVHLQYLGHPIA 297
Query: 398 GDSMYMPAAI 407
D +Y I
Sbjct: 298 NDVIYSDPTI 307
>gi|302550275|ref|ZP_07302617.1| ribosomal pseudouridine synthase [Streptomyces viridochromogenes
DSM 40736]
gi|302467893|gb|EFL30986.1| ribosomal pseudouridine synthase [Streptomyces viridochromogenes
DSM 40736]
Length = 317
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ E VV DKP + ++ E+ R LG+ L H++D T G V+
Sbjct: 86 VVHRDEHIVVADKPHFLATTPRGSHVAETALARLRRELGIPA-LTAAHRLDRLTAGLVLF 144
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
E + R+++V+K Y A+ AP G+ P + R+V E L E
Sbjct: 145 TVRLEDRGAYQTLFRDRRVRKEYEAV--APHDPGLAL----PRTVRSRIVKERGVLTARE 198
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V P+A V + +E S A ++ TG+THQ+R + A G PI+GD
Sbjct: 199 VAGE-----PNA-VSRIELVEHRAAGSGGLA-RYRLVPGTGQTHQLRVHMTALGVPILGD 251
Query: 400 SMY 402
+Y
Sbjct: 252 PLY 254
>gi|189461733|ref|ZP_03010518.1| hypothetical protein BACCOP_02399 [Bacteroides coprocola DSM 17136]
gi|189431493|gb|EDV00478.1| pseudouridine synthase, RluA family [Bacteroides coprocola DSM
17136]
Length = 224
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G VV A+T + + + R +VKK Y A+ P G + HY+
Sbjct: 51 LGVAHRLDRPVSGLVVFAKTSKALARLNDMFRNSEVKKTYWAIVKQCPPAEEGELVHYL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK +G S++Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDKEVKNSKKAVLNYRLIGH----------SQNY-YLLEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLA G PI GD Y
Sbjct: 155 RHHQIRCQLAKMGCPIKGDLKY 176
>gi|160885619|ref|ZP_02066622.1| hypothetical protein BACOVA_03622 [Bacteroides ovatus ATCC 8483]
gi|237719607|ref|ZP_04550088.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_2_4]
gi|262405080|ref|ZP_06081630.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_22]
gi|293371645|ref|ZP_06618056.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CMC 3f]
gi|294643576|ref|ZP_06721380.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CC 2a]
gi|294808675|ref|ZP_06767409.1| pseudouridine synthase, RluA family [Bacteroides xylanisolvens SD
CC 1b]
gi|299147480|ref|ZP_07040545.1| ribosomal large subunit pseudouridine synthase family protein
[Bacteroides sp. 3_1_23]
gi|336406561|ref|ZP_08587212.1| hypothetical protein HMPREF0127_04525 [Bacteroides sp. 1_1_30]
gi|345511369|ref|ZP_08790912.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
D1]
gi|383110676|ref|ZP_09931495.1| RluA family pseudouridine synthase [Bacteroides sp. D2]
gi|423215191|ref|ZP_17201719.1| RluA family pseudouridine synthase [Bacteroides xylanisolvens
CL03T12C04]
gi|423289103|ref|ZP_17267954.1| RluA family pseudouridine synthase [Bacteroides ovatus CL02T12C04]
gi|423294486|ref|ZP_17272613.1| RluA family pseudouridine synthase [Bacteroides ovatus CL03T12C18]
gi|156109241|gb|EDO10986.1| pseudouridine synthase, RluA family [Bacteroides ovatus ATCC 8483]
gi|229444545|gb|EEO50336.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
D1]
gi|229450876|gb|EEO56667.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_2_4]
gi|262355955|gb|EEZ05045.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_22]
gi|292633342|gb|EFF51912.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CMC 3f]
gi|292641071|gb|EFF59285.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CC 2a]
gi|294444114|gb|EFG12847.1| pseudouridine synthase, RluA family [Bacteroides xylanisolvens SD
CC 1b]
gi|295088159|emb|CBK69682.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
xylanisolvens XB1A]
gi|298514758|gb|EFI38642.1| ribosomal large subunit pseudouridine synthase family protein
[Bacteroides sp. 3_1_23]
gi|313694249|gb|EFS31084.1| RluA family pseudouridine synthase [Bacteroides sp. D2]
gi|335934463|gb|EGM96459.1| hypothetical protein HMPREF0127_04525 [Bacteroides sp. 1_1_30]
gi|392668187|gb|EIY61689.1| RluA family pseudouridine synthase [Bacteroides ovatus CL02T12C04]
gi|392675677|gb|EIY69118.1| RluA family pseudouridine synthase [Bacteroides ovatus CL03T12C18]
gi|392692454|gb|EIY85692.1| RluA family pseudouridine synthase [Bacteroides xylanisolvens
CL03T12C04]
Length = 223
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMR 320
L TH++D G V+ A+T + + + R +VKK Y A+ AP P G + H++
Sbjct: 51 LGVTHRLDRPVSGLVIFAKTSKALTRLNEMFRTSEVKKTYWAVVKNAPQEPEGELVHFL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK +G S +Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDKEVPNSKKAILHYRLIGH----------SENY-YLLEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
R HQ+R QLA G PI GD Y SP NP G
Sbjct: 155 RHHQIRCQLAKMGCPIKGDLKY--------GSPRSNPDG 185
>gi|416234455|ref|ZP_11629840.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 12P80B1]
gi|326565266|gb|EGE15451.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 12P80B1]
Length = 355
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGL 259
H + P DID II E+ ++++KPAG V G T + + + L
Sbjct: 110 HSEDLPENIDID----IIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHL 165
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H+ID T G +V+ART+ ++++K V + Y + +G + +
Sbjct: 166 PRA-GLVHRIDKDTTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIA-----LGAVHEVL 219
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I + G + M K+ P T I + + Y+ I L T
Sbjct: 220 RHAQIDAPI---GRHSTHRTKMAVKQTGKPALT-----HIVNAKYLHERYSL-LDIHLKT 270
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R L+ G P+VGD +Y
Sbjct: 271 GRTHQIRVHLSYVGHPLVGDPVY 293
>gi|198276202|ref|ZP_03208733.1| hypothetical protein BACPLE_02391 [Bacteroides plebeius DSM 17135]
gi|198271014|gb|EDY95284.1| pseudouridine synthase, RluA family [Bacteroides plebeius DSM
17135]
Length = 223
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L TH++D G VV A+T + S + R +VKK Y A+ G + HY+
Sbjct: 51 LGVTHRLDRPVSGLVVFAKTSKALSRLNEMFRNGEVKKTYWAIVKQQPKETEGELVHYL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK +G+ S +Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDKEVKNSKKAVLNYRLIGR----------SENY-YLLEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLA G PI GD Y
Sbjct: 155 RHHQIRCQLAKMGCPIKGDLKY 176
>gi|167628351|ref|YP_001678850.1| pseudouridine synthase [Heliobacterium modesticaldum Ice1]
gi|167591091|gb|ABZ82839.1| pseudouridine synthase, rlua family [Heliobacterium modesticaldum
Ice1]
Length = 339
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 24/234 (10%)
Query: 184 FRIT----HVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV- 238
FR+ H+D+ V+ G L V +H + + +++ ++LDKP G V
Sbjct: 45 FRLNGKRAHLDRRVKEGDLLEVCLHQEEEGNLAPVAMELKVLYEDADLLILDKPPGIEVH 104
Query: 239 -----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKI 293
+ A + + G+ +R H++D T G V A+ R++
Sbjct: 105 PPEQRARFRPTLAHGVAHYFAEK-GIKARVRPLHRLDKDTTGICVFAKNAFAHQALDRQL 163
Query: 294 REKKVKKLYLALTTAPLPVGIMTHYMRPINIAP-----RLVSEGWYLCQLEVMECKKVPW 348
R +++ YLA+ LP ++ PI P R+V + + +V
Sbjct: 164 RNGSLQRGYLAILRG-LPAELVGVIDAPIGRDPEHHMRRMVRDDGERA-ITRYRVTQVIE 221
Query: 349 PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
P K + + W ++ L TGRTHQ+R G P++GD +Y
Sbjct: 222 PSGLEMKGAAESEGHWAL------AEVILETGRTHQIRVHFRHLGTPLLGDRLY 269
>gi|373106320|ref|ZP_09520623.1| RluA family pseudouridine synthase [Stomatobaculum longum]
gi|371652695|gb|EHO18103.1| RluA family pseudouridine synthase [Stomatobaculum longum]
Length = 326
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
+++D T G V+ A+T+ ++R+K+++K YLA + A
Sbjct: 147 NRLDRNTSGLVLAAKTRTAAEELSVQLRDKRLQKYYLACVKGE------------VREAE 194
Query: 327 RLVS-----EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
RL + +G Q+ +K D + AY +D +++LLTGR
Sbjct: 195 RLSAFLYKDKGKNQVQIR---SRKTCAEDKEIQTAYR----PIAVQDGISLLEVQLLTGR 247
Query: 382 THQVRAQLAACGAPIVGDSMYM-PAAIAQLSS 412
+HQ+RAQLAA G PI+GD Y PA A+L+
Sbjct: 248 SHQIRAQLAAVGHPILGDPKYGDPAENARLAK 279
>gi|207341390|gb|EDZ69458.1| YOL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 589
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>gi|78485000|ref|YP_390925.1| pseudouridine synthase [Thiomicrospira crunogena XCL-2]
gi|78363286|gb|ABB41251.1| ribosomal large subunit pseudouridine synthase A [Thiomicrospira
crunogena XCL-2]
Length = 241
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPL 263
PK + +DW ++ + +V++KPAG SV G +++ A + T L
Sbjct: 17 PKLMSIPFQLDW---VLYEDDDIIVVNKPAGLLSVPGK--DLDPEMNLLAQVQKHVPTAL 71
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
H++D T G ++LA+ + + +++ +K Y A+ P H P+
Sbjct: 72 -IVHRLDMDTSGIMILAKHKASHRHLSIQFQDRLTEKTYQAICFGK-PSTSQGHLNLPMR 129
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
W L++++ K+ GKA S D A+E + +TGR+H
Sbjct: 130 C-------DWENRPLQIIDLKQ--------GKAASTHWKLTAQYDNAFEVNLTPVTGRSH 174
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R + G PI+GD++Y
Sbjct: 175 QLRLHMKMLGHPILGDNLY 193
>gi|29349180|ref|NP_812683.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
thetaiotaomicron VPI-5482]
gi|383124200|ref|ZP_09944867.1| RluA family pseudouridine synthase [Bacteroides sp. 1_1_6]
gi|29341088|gb|AAO78877.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
thetaiotaomicron VPI-5482]
gi|251839296|gb|EES67380.1| RluA family pseudouridine synthase [Bacteroides sp. 1_1_6]
Length = 223
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMRPIN 323
TH++D G V+ A+T + + + R +VKK Y A+ AP P G + HY+
Sbjct: 54 THRLDRPVSGLVIFAKTSKALTRLNEMFRTSEVKKTYWAVVKNAPKEPEGELVHYL---- 109
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
A + EV KK +G S +Y Y ++ L TGR H
Sbjct: 110 -ARNEKQNKSFAYDKEVPNSKKAILNYRLIGH----------SENY-YLLEVDLKTGRHH 157
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
Q+R QLA G PI GD Y +P NP G
Sbjct: 158 QIRCQLAKMGCPIKGDLKY--------GAPRSNPDG 185
>gi|416217936|ref|ZP_11624604.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 7169]
gi|416242382|ref|ZP_11633418.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC7]
gi|416246991|ref|ZP_11635360.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC8]
gi|421780079|ref|ZP_16216569.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis RH4]
gi|326560261|gb|EGE10649.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 7169]
gi|326570229|gb|EGE20274.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC8]
gi|326570966|gb|EGE20990.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC7]
gi|407812873|gb|EKF83657.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis RH4]
Length = 355
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGL 259
H + P DID II E+ ++++KPAG V G T + + + L
Sbjct: 110 HSEDLPENIDID----IIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHL 165
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H+ID T G +V+ART+ ++++K V + Y + +G + +
Sbjct: 166 PRA-GLVHRIDKDTTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIA-----LGAVHEVL 219
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I + G + M K+ P T I + + Y+ I L T
Sbjct: 220 RHAQIDAPI---GRHSTHRTKMAVKQTGKPALT-----HIVNAKYLHERYSL-LDIHLKT 270
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R L+ G P+VGD +Y
Sbjct: 271 GRTHQIRVHLSYVGHPLVGDPVY 293
>gi|307262378|ref|ZP_07544024.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306867926|gb|EFM99756.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 326
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 98 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQAHFLELVHRI 151
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
D T G +++A+ + H ++REK V+K YLAL G + + I AP L
Sbjct: 152 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLALVR-----GQWQAHTKVIK-APLLK 205
Query: 330 SEGWYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
+E L E ++ + P T +SIE+ YA +K +TGRTHQ+R
Sbjct: 206 NE---LASGERIVRVSEEGKPSET---RFSIEE------RYANATLVKASPVTGRTHQIR 253
Query: 387 AQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
G PI D Y A +++ + GL
Sbjct: 254 VHTQYAGHPIALDDKYGEAEFDSKMKAAGLQ 284
>gi|303245339|ref|ZP_07331623.1| pseudouridine synthase, RluA family [Desulfovibrio fructosovorans
JJ]
gi|302493188|gb|EFL53050.1| pseudouridine synthase, RluA family [Desulfovibrio fructosovorans
JJ]
Length = 551
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 29/185 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--------THQIDNCTEGCVVL 279
+VLDKPAG +V E T +R L LR H++D T G +++
Sbjct: 99 IVLDKPAGLTVHPAPGLPE---GTLVNRLLYRFPQLRDMAGERPGIVHRLDKDTSGLLLV 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A T+ ++V+K YLAL P PI P+ + ++
Sbjct: 156 ALTESARQALAADFAARRVRKTYLALVHG-RPERDGGDIRLPIGRDPK------HRAKMA 208
Query: 340 VMECKKVPWPDATVGK-AYSIEDCGWPSRDYAYEC-KIKLLTGRTHQVRAQLAACGAPIV 397
V+ A G+ A S W + D A ++ + TGRTHQ+R LAA G PIV
Sbjct: 209 VV---------AKGGREARSRWRLVWSAPDAAASLLEVDIFTGRTHQIRVHLAAIGHPIV 259
Query: 398 GDSMY 402
GD++Y
Sbjct: 260 GDAVY 264
>gi|377809518|ref|YP_005004739.1| RluA family pseudouridine synthase [Pediococcus claussenii ATCC
BAA-344]
gi|361056259|gb|AEV95063.1| pseudouridine synthase, RluA family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 271
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 29/191 (15%)
Query: 220 IIAVTESHVVLDKP----AGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I+ ++ +V++KP S D + + + + + ++D T G
Sbjct: 52 IVYEDDNFLVVNKPPYLATVQSSSNQVDTLVNRVKYYLYESKNESQIVHVVTRLDQDTSG 111
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMR--PINIAPRLVSE 331
V+ A+ + ++ R++++ +KK+Y A+ P G++ +++ P + R+V E
Sbjct: 112 LVLFAKHRFAHTVLDRQLKKHSIKKMYKAIVVGYFPKKYGVIDSFIKRDPSSFIKRMVGE 171
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
E K++ K YS+ +I+L TGRTHQ+R +A+
Sbjct: 172 DGKKSLTEYWVRKEM--------KGYSL-------------VEIRLHTGRTHQIRVHMAS 210
Query: 392 CGAPIVGDSMY 402
G ++GD +Y
Sbjct: 211 IGHALLGDPLY 221
>gi|383309857|ref|YP_005362667.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871129|gb|AFF23496.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. HN06]
Length = 311
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNC 272
++I+ E +VL+KP+G +V G + + E+ T A L H++D
Sbjct: 82 LENQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRD 137
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G + + + AP L +E
Sbjct: 138 TSGILLVAKKRSALRSLHEQLREKTVQKDYLALVR-----GQWQSHCKVVK-APLLKNE- 190
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
L E ++ + P T +SIE+ +YA K +TGRTHQ+R
Sbjct: 191 --LSSGERIVRVSEQGKPSET---RFSIEE----RYEYATLVKASPVTGRTHQIRVHTQY 241
Query: 392 CGAPIVGDSMY 402
G PI D Y
Sbjct: 242 AGHPIALDDKY 252
>gi|261367348|ref|ZP_05980231.1| ribosomal large subunit pseudouridine synthase D [Subdoligranulum
variabile DSM 15176]
gi|282570108|gb|EFB75643.1| pseudouridine synthase, RluA family [Subdoligranulum variabile DSM
15176]
Length = 299
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 175 KTVREAQKTF----RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL 230
K+V+ + F + H DQ V AG + + P+ I+ E VL
Sbjct: 31 KSVKHTGQGFFADGQALHTDQKVHAGQCITFALPPEPATSVIPQPIPLSIVYEDEFAAVL 90
Query: 231 DKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
DKPAG +V T + + + A + ++ G R ++ID T G V+ A+ +
Sbjct: 91 DKPAGLAVHPTLNYPDHTLANGWIYYLQSQGKNGVFRPVNRIDKNTSGLVLCAQ-----N 145
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
F + + KK YLA+ LP+G P + + G + V K
Sbjct: 146 AFAAPLLAGQAKKCYLAIVQGSLPLG-------PGRVEAPIGRRGDSIIGRCVTPEGKYS 198
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ TV A S +++ I TGRTHQ+R +A G P+ GD++Y
Sbjct: 199 LTEYTVLAA---------SAEHSLVACIP-RTGRTHQIRVHMAYIGHPLAGDTLY 243
>gi|410617784|ref|ZP_11328749.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
gi|410162915|dbj|GAC32887.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
Length = 318
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 85/224 (37%), Gaps = 63/224 (28%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
++D T GC+V+A+ + H ++R+KK+ K Y AL P Y +
Sbjct: 143 RLDRDTSGCLVIAKKRSALKALHEQLRDKKMDKRYQALVVGEWP---ENRYKVNAPLLKN 199
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--------- 378
++ G L S++ G PS E + ++L
Sbjct: 200 ILKSGERLV---------------------SVDTEGKPS-----ETRFRVLNRYIGSTLV 233
Query: 379 -----TGRTHQVRAQLAACGAPIVGDSMYMPAAI-AQLSSPGLN 416
TGRTHQ+R G PI D Y A Q++ GL
Sbjct: 234 EASPITGRTHQIRVHCLHAGHPIACDDKYGDAEFTGQMNKQGLK 277
>gi|294668132|ref|ZP_06733239.1| ribosomal large subunit pseudouridine synthase [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309840|gb|EFE51083.1| ribosomal large subunit pseudouridine synthase [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 297
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAGT+V G + + RA L H++D T G +++
Sbjct: 62 IIYEDDALLVIDKPAGTAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 120
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLE 339
A+ + H IR +K+YLAL LP H P + ++G + +
Sbjct: 121 AKKRNALVKLHEAIRNDHPQKIYLALGVGKLPNDSF-HVKLP--LFKYTGAQGEKMVR-- 175
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
V E + V +S + + L TGRTHQ+R L + PI GD
Sbjct: 176 VSEDGQSAHTIFRVLNRFSDGLLHQVGLSHLTLVQATLKTGRTHQIRVHLQSQQCPIAGD 235
Query: 400 SMY 402
Y
Sbjct: 236 ERY 238
>gi|408791709|ref|ZP_11203319.1| pseudouridine synthase, RluA family [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408463119|gb|EKJ86844.1| pseudouridine synthase, RluA family [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 312
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 39/199 (19%)
Query: 231 DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFH 290
D+P+ V G + AT R G+ H++D TEG +++A+T +
Sbjct: 110 DQPS--LVNGLLHQFKNLSATGGERRPGIV------HRLDKPTEGVLIIAKTDRAHAALS 161
Query: 291 RKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM 341
+ +++ V K Y A T LP+G P+ V E ++ +
Sbjct: 162 KMFQDRLVDKTYYAWVLQAPVESEGTVNLPIG-----RHPVERVKMCVRED---GRMAIT 213
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
K G+ +S+ K+ L TGRTHQ+R +A G P+VGD++
Sbjct: 214 HYKTEKIVQTQTGRKFSL-------------MKLGLETGRTHQIRVHMAKMGCPVVGDTL 260
Query: 402 YMPAAIAQLSSPGLNPFGK 420
Y +A + GL F K
Sbjct: 261 YSRSA-KDYTQYGLLLFAK 278
>gi|189485617|ref|YP_001956558.1| pseudouridylate synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287576|dbj|BAG14097.1| pseudouridylate synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 296
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINI 324
H++D T G +V A+T++ ++++++ VKK+Y A + GI+ P+
Sbjct: 127 HRLDKDTSGVIVFAKTEKAKISISKQLQKRVVKKIYYAAVKGVIAENRGIIK---APLGR 183
Query: 325 APR---LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+P+ LVS ++ + E K + D DY K++++TGR
Sbjct: 184 SPKNRKLVSVNPLAKKVAITEFKVIERKD-----------------DYTL-LKVRIITGR 225
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKE 424
THQ+R+ + P++GD Y PG +C+++
Sbjct: 226 THQIRSHMKYINHPVIGDKQY--------GGPGTIGLKRCERQ 260
>gi|227545266|ref|ZP_03975315.1| pseudouridylate synthase RluD [Lactobacillus reuteri CF48-3A]
gi|338203386|ref|YP_004649531.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
gi|154705590|gb|ABS84221.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
reuteri]
gi|227184756|gb|EEI64827.1| pseudouridylate synthase RluD [Lactobacillus reuteri CF48-3A]
gi|336448626|gb|AEI57241.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
Length = 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 228 VVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V++KP G + G T + A + + + H+ID T G V++A+
Sbjct: 98 LVVNKPRGQKTHPNYHGETGTLMNDVAGYLAHS---QNNAYMVHRIDLQTSGAVIVAKNP 154
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG---WYLCQLEV 340
I +R I + ++ + YLAL ++ G W + + V
Sbjct: 155 IVVPILNRLISDGQIHRQYLALVEG------------------KMAQSGKFDWAIGRNPV 196
Query: 341 M-ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+V +A Y R ++ L+TGRTHQ+R LA G PIVGD
Sbjct: 197 NPHLHQVNGQNAQPALTYYETLASNHERSL---VRLHLVTGRTHQLRVHLAHSGHPIVGD 253
Query: 400 SMYMPAAIAQLSSPGLNPFGKCQK 423
+Y P LS+ G+ G QK
Sbjct: 254 PLYNP-----LSTEGMLLHGVAQK 272
>gi|416157952|ref|ZP_11605391.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 101P30B1]
gi|416222578|ref|ZP_11626182.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 103P14B1]
gi|416229171|ref|ZP_11627960.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 46P47B1]
gi|326562905|gb|EGE13192.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 46P47B1]
gi|326563654|gb|EGE13906.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 103P14B1]
gi|326573262|gb|EGE23230.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 101P30B1]
Length = 355
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGL 259
H + P DID II E+ ++++KPAG V G T + + + L
Sbjct: 110 HSEDLPENIDID----IIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHL 165
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H+ID T G +V+ART+ ++++K V + Y + +G + +
Sbjct: 166 PRA-GLVHRIDKDTTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIA-----LGAVHEVL 219
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I + G + M K+ P T I + + Y+ I L T
Sbjct: 220 RHAQIDAPI---GRHSTHRTKMAVKQTGKPALT-----HIVNAKYLHERYSL-LDIHLKT 270
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R L+ G P+VGD +Y
Sbjct: 271 GRTHQIRVHLSYVGHPLVGDPVY 293
>gi|298386878|ref|ZP_06996433.1| ribosomal large subunit pseudouridine synthase family protein
[Bacteroides sp. 1_1_14]
gi|298260552|gb|EFI03421.1| ribosomal large subunit pseudouridine synthase family protein
[Bacteroides sp. 1_1_14]
Length = 223
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMRPIN 323
TH++D G V+ A+T + + + R +VKK Y A+ AP P G + HY+
Sbjct: 54 THRLDRPVSGLVIFAKTSKALTRLNEMFRTSEVKKTYWAVVKNAPKEPEGELVHYL---- 109
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
A + EV KK +G S +Y Y ++ L TGR H
Sbjct: 110 -ARNEKQNKSFAYDKEVPNSKKAILNYRLIGH----------SENY-YLLEVDLKTGRHH 157
Query: 384 QVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
Q+R QLA G PI GD Y +P NP G
Sbjct: 158 QIRCQLAKMGCPIKGDLKY--------GAPRSNPDG 185
>gi|451343241|ref|ZP_21912315.1| RluA family pseudouridine synthase [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449338015|gb|EMD17169.1| RluA family pseudouridine synthase [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 326
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 49/236 (20%)
Query: 192 IVEAGTYLRVHVHPKRF------PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNI 245
I++ G + +++ RF Y +D ++ E ++++KPAG V G +
Sbjct: 52 ILKRGDEVSLYLFEDRFNDYHQAQTIYYLDIQFEVVYEDEQILIVNKPAGLLVQGDS--- 108
Query: 246 EESCATFASRALGLTTPLRT-------------THQIDNCTEGCVVLARTQEYCSIFHRK 292
+E+ T + L + H++D T G V+ +T + +
Sbjct: 109 KENTNTLDKQVLAYLYQKKEYNPHSQLAFTPAPVHRLDRNTSGLVIFGKTMKALQDLNEM 168
Query: 293 IREKK-VKKLYLALTTAPLPVGIMTHYMRPINIAPRLV-----SEGWYLCQLEVMECKKV 346
++++ + K Y+ + + + Y++ ++ S+G Q EV K +
Sbjct: 169 MKKRYCIDKKYITIVKGFMNDESLEGYVKKNEEEGKMYMVSSDSKGALRMQTEVHSLKSL 228
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K YS+ +++L+TGRTHQ+R L++ G P++GD Y
Sbjct: 229 --------KEYSL-------------IEVQLITGRTHQIRIHLSSSGHPLMGDRKY 263
>gi|418068595|ref|ZP_12705877.1| pseudouridylate synthase, 23S RNA-specific [Pediococcus
acidilactici MA18/5M]
gi|357539331|gb|EHJ23350.1| pseudouridylate synthase, 23S RNA-specific [Pediococcus
acidilactici MA18/5M]
Length = 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 49/192 (25%)
Query: 228 VVLDKPAGTS--------VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+V++KPAG +G + ++ A S A + H++D T G +++
Sbjct: 95 LVVNKPAGIKTHANQPHELGSMINFLQAYFAKKDSNAYNV-------HRLDQWTSGALLV 147
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAPRLVS 330
A+ I R+I +K +++ YL + T LP+G+ H R
Sbjct: 148 AKNPVVVPILSRQISQKLIQRTYLCVVEGHLKSRSGTITLPIGLDPHDQR---------- 197
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
+++ P A + + R ++L TGRTHQ+R LA
Sbjct: 198 ------------KRQINGPGAQPATTHYQVVREFVERSL---LLVQLATGRTHQIRVHLA 242
Query: 391 ACGAPIVGDSMY 402
A G PIVGD +Y
Sbjct: 243 ALGHPIVGDPLY 254
>gi|422880965|ref|ZP_16927421.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK355]
gi|332365407|gb|EGJ43168.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK355]
Length = 277
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 37/192 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E + S +G T H++D T G V+ A+
Sbjct: 78 IIVNKPEGMKTHAN-EPTELALLNHVSAYVGETC--YVVHRLDKETSGVVLFAKNPFVLP 134
Query: 288 IFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + ++++ + Y AL P +G H R + PR +G Y +
Sbjct: 135 ILNRLLEKREISRQYWALVQGKFPAKNLIYKDKIGRDRHDRRKRLVDPR---KGLY-AET 190
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
V K+ G+A + +C++K TGRTHQ+R LA G P+VG
Sbjct: 191 HVTRLKQ-------FGQATLV------------QCQLK--TGRTHQIRVHLAHHGHPLVG 229
Query: 399 DSMYMPAAIAQL 410
D +Y P +L
Sbjct: 230 DPLYHPQPQGRL 241
>gi|259502474|ref|ZP_05745376.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
antri DSM 16041]
gi|259169617|gb|EEW54112.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
antri DSM 16041]
Length = 289
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 39/225 (17%)
Query: 219 RIIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFASRALGL-----TTPLR--TTHQID 270
+++ +S +V+DKPAG TSV G + + T +R G + LR ++D
Sbjct: 79 KVVYEDDSWLVIDKPAGVTSVPGPSI----TNGTVLNRVKGHLEKQGSEDLRPHLITRLD 134
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G +++A+ S+ +++++ ++ K Y A+ + G I P +
Sbjct: 135 RFTSGLLLVAKHHVASSMISQQVQQHRMLKEYTAVVSGRFADG------HGIIDQPIVRR 188
Query: 331 EGWYLCQLEVMECKKVPWPDATVG-KAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
EG + ++ PD Y +ED D+A +++L TGRTHQ+R L
Sbjct: 189 EG---------QAARIIAPDGQQAVTEYWVEDQ---EPDWA-RLRLQLHTGRTHQIRVHL 235
Query: 390 AACGAPIVGDSMY---MPAAIAQLSSPG----LNPFGKCQKEYAS 427
A+ G P++GD +Y + A QL L+PF + Q + S
Sbjct: 236 ASKGHPLIGDHLYGGDLTRADHQLLHASRLAFLDPFSREQLTFTS 280
>gi|225025072|ref|ZP_03714264.1| hypothetical protein EIKCOROL_01961 [Eikenella corrodens ATCC
23834]
gi|224942164|gb|EEG23373.1| hypothetical protein EIKCOROL_01961 [Eikenella corrodens ATCC
23834]
Length = 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 12/194 (6%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
PR +DI + E +V+DKP+G +V G + + RA L H+
Sbjct: 87 PREFDIVFED------EHLLVVDKPSGVAVHGGS-GVSFGVIEQLRRARPQARYLELVHR 139
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
+D T G +V+A+ + H R K KK+YLAL P G+ + P+
Sbjct: 140 LDKDTSGLLVVAKKRSALVKLHEAWRNDKPKKVYLALGMGAWPQGVRQVKL-PLFKYTGA 198
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQ 388
E E + + G A + G + + L TGRTHQ+R
Sbjct: 199 AGEKMVRVSEEGQSAHTLFRVLESFGGA-PLHAVGLSALSL---MEATLRTGRTHQIRVH 254
Query: 389 LAACGAPIVGDSMY 402
+ + PI GD Y
Sbjct: 255 MQSQNCPIAGDERY 268
>gi|452910377|ref|ZP_21959058.1| ribosomal large subunit pseudouridine synthase D type protein
[Kocuria palustris PEL]
gi|452834624|gb|EME37424.1| ribosomal large subunit pseudouridine synthase D type protein
[Kocuria palustris PEL]
Length = 309
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P Y+ +W ++AV + H + P G I ++ + R G L
Sbjct: 88 PHDMPVLYEDEW---LLAVDKPHGLPSTPRGGF-------IAQTALSVLRRRRG-EDDLV 136
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G ++L R R+ ++++ +K Y A+ +G + P
Sbjct: 137 PAHRLDRDTAGVLLLIRDPRARGAVQRQFQDRRTEKSYEAVAR----LGGLVLEDLPDRR 192
Query: 325 APRLVSEGWYLCQLEVMECKKVPW-PDATVG----KAYSIEDCGWPSRDYAYECKIKLLT 379
+ RL L Q V++ +VP P+A A+ +D W ++ LT
Sbjct: 193 SSRL------LKQRGVLQAAEVPGEPNAVTHLDPLSAFEDDDGRW------AHLRLHPLT 240
Query: 380 GRTHQVRAQLAACGAPIVGDSMY---MPAAIAQLSSP 413
G+THQ+R LAA G PI D +Y +P +S P
Sbjct: 241 GQTHQLRVHLAALGTPIRWDPLYPQVLPREPGDVSRP 277
>gi|423335711|ref|ZP_17313484.1| pseudouridylate synthase [Lactobacillus reuteri ATCC 53608]
gi|337728936|emb|CCC04056.1| pseudouridylate synthase [Lactobacillus reuteri ATCC 53608]
Length = 301
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 30/192 (15%)
Query: 220 IIAVTESHVVLDKPAGTSVGG-----TTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
II + ++++KPAG + D++ + R ++D T
Sbjct: 80 IIYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKGYYKRQNYENQVTHVATRLDRDTS 139
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR--PINIAPRLVS 330
G VV + + ++ ++++ VKK YLAL +P G + ++ P + R+V
Sbjct: 140 GLVVFPKHRFAHAVLDEQLKKHLVKKNYLALIKGKVPTEHGYIDAPIQRDPNSFVKRMVG 199
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
+ GKA E A KI+L TGRTHQ+R A
Sbjct: 200 KE---------------------GKASVTEYWRQECNIQASLIKIRLHTGRTHQIRVHFA 238
Query: 391 ACGAPIVGDSMY 402
+ G P++GD MY
Sbjct: 239 SLGFPLIGDKMY 250
>gi|255534329|ref|YP_003094700.1| Ribosomal large subunit pseudouridine synthase D [Flavobacteriaceae
bacterium 3519-10]
gi|255340525|gb|ACU06638.1| Ribosomal large subunit pseudouridine synthase D [Flavobacteriaceae
bacterium 3519-10]
Length = 233
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTT-------DNIEESCATFASRA----LGLTTPLRTT 266
S+I+ +V++K AG V G D I++ ++A LGL
Sbjct: 11 SQIVFEDNHLLVINKKAGQLVQGDKTGDASLLDLIKDFIKKRDNKAGNVFLGLV------ 64
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H+ID T G V+ A+T + + + ++ +++KK Y A+ +P ++ H R ++
Sbjct: 65 HRIDRPTSGLVIYAKTSKALTRLTQMVKNREIKKTYWAV----VPKEVIPHSARLLH--- 117
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
YL + E V K + + D +I L TGR HQ+R
Sbjct: 118 -------YLQKNEKTNKSTVFIKPTENAKESVLNYTVIKTLDNFQLLEIDLETGRHHQIR 170
Query: 387 AQLAACGAPIVGDSMY 402
AQL+ G PI GD Y
Sbjct: 171 AQLSKIGVPIKGDLKY 186
>gi|406899308|gb|EKD42615.1| Pseudouridine synthase [uncultured bacterium]
Length = 236
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 218 SRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASR--ALGLTTPLRTTHQIDN 271
S I+ E +++DKP+ G T+ + + +A + +G H++DN
Sbjct: 3 SNILYEDEVLLIVDKPSNIPCYPLKEGETNTLANALLAYAPQLSQVGDGLDAGIVHRLDN 62
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G +V+A+T E + +KK Y A +P I + PI P+ +
Sbjct: 63 TTTGVLVVAKTNEVYQKLRAIWNQSGIKKQYRAFVYGIVPQKIDIGF--PIAHHPK-NKK 119
Query: 332 GWYLCQLE--VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+C E E K P + V + + E + + TG HQ+R L
Sbjct: 120 KMVVCSSEKQAREFKARPAETSAVRQRI----FQLSKNEAVSEVLVTICTGVRHQIRVHL 175
Query: 390 AACGAPIVGDSMY---MPAAIAQLSSPGLN 416
A G P+VGD++Y + A +A+ P LN
Sbjct: 176 AFAGYPLVGDALYQKKITAGLARFKRPLLN 205
>gi|350568531|ref|ZP_08936930.1| RNA pseudouridylate synthase [Propionibacterium avidum ATCC 25577]
gi|348661403|gb|EGY78095.1| RNA pseudouridylate synthase [Propionibacterium avidum ATCC 25577]
Length = 305
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ RI+ V + H + P G ++ ES LGL L H++D T G
Sbjct: 82 DDRILVVDKPHFLSSIPRGR-------HVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGV 133
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW--- 333
++L R + + + +KV K Y + AP ++ H + + +GW
Sbjct: 134 LLLTRERRWRRPYQEMFERRKVFKKYRLV--AP----VVQHRAGDGVV---VTKDGWQVR 184
Query: 334 --YLCQLEVMECKKVPW-PDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA 390
+ + +++ +++P P+A G E G YE + + TGRTHQ+R +
Sbjct: 185 SRIIKERGILQAREIPGEPNAVTGITLLAEHDGLG----LYEARPR--TGRTHQIRLHMQ 238
Query: 391 ACGAPIVGDSMY 402
GAPIV D Y
Sbjct: 239 RLGAPIVNDPFY 250
>gi|330837755|ref|YP_004412396.1| ribosomal large subunit pseudouridine synthase D [Sphaerochaeta
coccoides DSM 17374]
gi|329749658|gb|AEC03014.1| ribosomal large subunit pseudouridine synthase D [Sphaerochaeta
coccoides DSM 17374]
Length = 233
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 64/144 (44%), Gaps = 24/144 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV---GIMTHYMRPIN 323
H++D T G V+ RT++ + R V K+Y A+ A LP G + HY+
Sbjct: 65 HRLDRPTSGVVLYCRTEKALGRMNEMFRGSDVSKVYWAVVDA-LPQNTEGTLVHYI---- 119
Query: 324 IAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIED--CGWPSRDYAYECKIKLLTGR 381
+ K V P TVG ++ D SR+Y + +I L TGR
Sbjct: 120 -------------FRDTRTNKSVARPVETVGSKFAKLDYRIIGASRNY-HLLEIVLHTGR 165
Query: 382 THQVRAQLAACGAPIVGDSMYMPA 405
HQ+RAQLAA G I GD Y A
Sbjct: 166 HHQIRAQLAAIGLHIKGDLKYGAA 189
>gi|325265762|ref|ZP_08132449.1| RNA pseudouridine synthase [Kingella denitrificans ATCC 33394]
gi|324982745|gb|EGC18370.1| RNA pseudouridine synthase [Kingella denitrificans ATCC 33394]
Length = 309
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 30/210 (14%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL----TTPLRTTHQI 269
I ++ I+ + + +V+DKP V + + E+ T L + H++
Sbjct: 93 IPFDEHILHIDQHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRADLQHLNVADITPVHRL 152
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL--TTAPLPVGIMTHYMRPINIAPR 327
D T G ++L+ + + + EK V+K Y AL T LP P+ + R
Sbjct: 153 DKDTAGVMLLSHNPASRAAYQQMFAEKTVQKTYHALAPTRLDLPY--------PLTVQSR 204
Query: 328 LV-SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
LV E ++L Q EV D T I YE +K LTG+ HQ+R
Sbjct: 205 LVRGESFFLTQ-EV---------DGTPNAQTEIRLLEMHGDVSLYE--LKPLTGKKHQLR 252
Query: 387 AQLAACGAPIVGDSMY---MPAAIAQLSSP 413
+ G P++ D++Y +PA + P
Sbjct: 253 VHMMKLGMPLLNDALYPDVLPAGTEDYAKP 282
>gi|152991961|ref|YP_001357682.1| ribosomal large subunit pseudouridine synthase D [Sulfurovum sp.
NBC37-1]
gi|151423822|dbj|BAF71325.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Sulfurovum sp. NBC37-1]
Length = 245
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 23/139 (16%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G ++L R +E+ ++ + ++V+K Y+A G++ + I+
Sbjct: 92 HRLDRDTSGVLLLGRNREFIERAIKEFKNRRVEKHYVAWVD-----GVIYETV-EIDEPI 145
Query: 327 RLVSEGWYLCQLEVMECKK---VPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTH 383
V +G ++ + KK V P+ GK + KI + TGRTH
Sbjct: 146 FTVKKGKAFSMIDPVRGKKAHTVVHPEEVQGKKSKV--------------KIDITTGRTH 191
Query: 384 QVRAQLAACGAPIVGDSMY 402
Q+R LA G PIVGD Y
Sbjct: 192 QIRVHLAHIGHPIVGDEQY 210
>gi|395503409|ref|XP_003756058.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 2
[Sarcophilus harrisii]
Length = 376
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 22/190 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++A + VV+DKP+ V + F L H++D T G ++
Sbjct: 58 RLLAEDDEVVVVDKPSSMPVH-PCGRFRHNTVIFVLGKEHQLKELHPLHRLDRLTSGVLM 116
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A+T H ++R+++++K Y+ P +T PI + VS LC++
Sbjct: 117 FAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPAEAVT-CKEPILV----VSYKVGLCRV 171
Query: 339 EVM--ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
+ C+ V + + + C+ LTGRTHQ+R L G PI
Sbjct: 172 DPQGKPCETV------------FQRLSYNGQSSVVHCRP--LTGRTHQIRVHLQFLGHPI 217
Query: 397 VGDSMYMPAA 406
+ D +Y AA
Sbjct: 218 INDPIYNTAA 227
>gi|334147001|ref|YP_004509930.1| putative ribosomal large subunit pseudouridine synthase D
[Porphyromonas gingivalis TDC60]
gi|333804157|dbj|BAK25364.1| putative ribosomal large subunit pseudouridine synthase D
[Porphyromonas gingivalis TDC60]
Length = 227
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G VV A+T + + + R+ KV+K+Y A+ P + HY
Sbjct: 51 LGVAHRLDRPVAGLVVFAKTSKALARLNNMFRDGKVQKVYRAIVKQRPPKDGDTLVHY-- 108
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
I+ RL +C KVP K S+ S D + +I+L TG
Sbjct: 109 -ISRNERLNKSFASVC--------KVPN-----SKKASLSYRLLASSDNYHLLEIELHTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLA G PI GD Y
Sbjct: 155 RHHQIRCQLATMGCPIKGDLKY 176
>gi|168705355|ref|ZP_02737632.1| pseudouridine synthase [Gemmata obscuriglobus UQM 2246]
Length = 238
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 34/187 (18%)
Query: 228 VVLDKPAG--TSVGGTTDNIEESCATFA----SRALGLTTPLRTTHQIDNCTEGCVVLAR 281
VV++KPA T N+EE + ++ G+ L H++D G V AR
Sbjct: 19 VVVNKPAPLLTQAPPGVPNLEERVRAYIKDKYAKPAGVY--LGVPHRLDRPVSGVVCFAR 76
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINIAPRLVS--EGWYLCQ 337
+ H + + V+K+Y AL + G+ Y+R + R EG +
Sbjct: 77 NTKAAQRVHSQFEHRSVRKVYWALVEGVVEPDAGVWDDYIRKVENEARAARGHEGEPGAK 136
Query: 338 LEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLAACGAP 395
L +E + + +A +I+L LTGR HQ+R Q A G P
Sbjct: 137 LATLEFRVL--------------------ERFAAHTRIELHPLTGRMHQLRVQSAWRGHP 176
Query: 396 IVGDSMY 402
++GDS+Y
Sbjct: 177 VIGDSLY 183
>gi|419970829|ref|ZP_14486305.1| RNA pseudouridine synthase [Porphyromonas gingivalis W50]
gi|392609968|gb|EIW92762.1| RNA pseudouridine synthase [Porphyromonas gingivalis W50]
Length = 227
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMR 320
L H++D G VV A+T + + + R+ KV+K+Y A+ P + HY
Sbjct: 51 LGVAHRLDRPVAGLVVFAKTSKALARLNNMFRDGKVQKVYRAIVKQRPPKDGDTLVHY-- 108
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
I+ RL +C KVP K S+ S D + +I+L TG
Sbjct: 109 -ISRNERLNKSFASVC--------KVPN-----SKKASLSYRLLASSDNYHLLEIELHTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMY 402
R HQ+R QLA G PI GD Y
Sbjct: 155 RHHQIRCQLATMGCPIKGDLKY 176
>gi|227512235|ref|ZP_03942284.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus buchneri ATCC
11577]
gi|227524034|ref|ZP_03954083.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus hilgardii
ATCC 8290]
gi|227084629|gb|EEI19941.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus buchneri ATCC
11577]
gi|227088773|gb|EEI24085.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus hilgardii
ATCC 8290]
Length = 297
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQID 270
D +I+ E +V++K +G + D++ + R + ++D
Sbjct: 76 DLPIQIVFEDEHFLVVNKLSGIASVPAHNRANDSLVNRVKGYYQRNHYANQKIHIVTRLD 135
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS 330
T G V+ A+ S+ +++++ ++KK YLA+ Y+ PI A
Sbjct: 136 KDTSGLVIFAKHHFAHSVLDKQLKDHQIKKTYLAIVEGTFSTTHFEIYL-PIKRA----- 189
Query: 331 EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQVRAQL 389
+G + ++V +P GK SI + R + K+++ TGRTHQ+R +
Sbjct: 190 DG-------SLVKRQVGFP----GKM-SITEAWTKQRLRQHTLLKLQIHTGRTHQIRVHM 237
Query: 390 AACGAPIVGDSMYMP 404
A G P+VGD +Y P
Sbjct: 238 TAIGHPLVGDWLYNP 252
>gi|384564783|ref|ZP_10011887.1| 23S RNA-specific pseudouridylate synthase [Saccharomonospora glauca
K62]
gi|384520637|gb|EIE97832.1| 23S RNA-specific pseudouridylate synthase [Saccharomonospora glauca
K62]
Length = 322
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 30/181 (16%)
Query: 228 VVLDKP---AGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
VV DKP A T GG ++ ++ ALG+T L H++D T G V+ +E
Sbjct: 111 VVADKPHFLATTPRGG---HVRQTALVRLRHALGITD-LTPVHRLDRVTAGLVLFVTRRE 166
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ + + +++ V+K Y A+ AP P PR V L + V++ +
Sbjct: 167 LRAPYQQLFQQRLVRKEYEAI--AP---------YDPDLELPRTV-RSRILKKRGVLQAR 214
Query: 345 KVPW-PDAT--VGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
+VP P+A V ++ G +++ TGRTHQ+R + + G PI+GD+
Sbjct: 215 EVPGAPNAETHVDLLDHTDELG--------RYRLRPTTGRTHQLRVHMTSLGVPILGDTF 266
Query: 402 Y 402
Y
Sbjct: 267 Y 267
>gi|375093868|ref|ZP_09740133.1| 23S RNA-specific pseudouridylate synthase [Saccharomonospora marina
XMU15]
gi|374654601|gb|EHR49434.1| 23S RNA-specific pseudouridylate synthase [Saccharomonospora marina
XMU15]
Length = 313
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 26/200 (13%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P +DI I+ + VV+DKP + ++ ++ LGL L
Sbjct: 81 PYEVPVPFDIG----IVHRDDDLVVVDKPHFMATIPRGQHVLQTALVRLRHDLGLPE-LS 135
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H++D T G V+ + + + R++ V+K Y A+ AP + P +
Sbjct: 136 PAHRLDRGTAGLVMFVTRSQLRAPYQNLFRDRAVRKEYEAI--APYDPAVEL----PRTV 189
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRT 382
R+V E L + ME VP + + + G + +LL TGRT
Sbjct: 190 RSRIVKERGIL---KAMEVPGVPNAETRIELVRHRDGLG----------RYRLLPATGRT 236
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R + + G PI+GD+ Y
Sbjct: 237 HQLRVHMNSLGLPILGDTFY 256
>gi|300703940|ref|YP_003745542.1| ribosomal large subunit pseudouridine synthase d [Ralstonia
solanacearum CFBP2957]
gi|299071603|emb|CBJ42927.1| Ribosomal large subunit pseudouridine synthase D [Ralstonia
solanacearum CFBP2957]
Length = 370
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 225 ESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
++ +V++KPAG V G + + +A GL H++D T G +V+A
Sbjct: 135 DTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPR-AGIVHRLDKETSGLMVVA 193
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEGWYLCQLE 339
RT + R+++ + VK+ YLAL P G + PI PR + + +E
Sbjct: 194 RTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDA---PIGRDPR---DRTRMAIIE 247
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
K P T K + D G R + +L TGRTHQ+R + G P++GD
Sbjct: 248 TASGK----PARTHFKTLDVIDLG---RAQVSLVQCQLETGRTHQIRVHFESEGHPLLGD 300
Query: 400 SMY 402
+Y
Sbjct: 301 PVY 303
>gi|313678812|ref|YP_004056552.1| ribosomal large subunit pseudouridine synthase, RluA family
[Mycoplasma bovis PG45]
gi|312950691|gb|ADR25286.1| ribosomal large subunit pseudouridine synthase, RluA family
[Mycoplasma bovis PG45]
Length = 305
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNCTEGCVVLA 280
+VL+KP+G V G D + + L T L H+ID T G +++A
Sbjct: 86 LVLNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDTNGLLRLGIVHRIDKDTSGLLIIA 145
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ E + + ++ ++K+ Y+A+ LP + IN+ + ++ L +
Sbjct: 146 KDNETHNELAKMLKNHQIKRTYIAICKGILPNKVT-----KINLPIQRDAKNRKLMSIHK 200
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
V + + K + I++ + K +L TGRTHQ+R LA P+ GD+
Sbjct: 201 DGKSSVTY--VHLLKTFYIDNKPYSL------VKCELETGRTHQIRVHLAYIKHPVYGDN 252
Query: 401 MY------MPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 438
+Y + ++P K Q + SD E + E+
Sbjct: 253 IYGSHVDDFNQRLHAYRLSFIHPISKKQVDVYSDIPSEFDIAEY 296
>gi|254776711|ref|ZP_05218227.1| RNA pseudouridine synthase family protein [Mycobacterium avium
subsp. avium ATCC 25291]
Length = 287
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 30/244 (12%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+ P + ++ ++ + VV+DKP + ++ ++ R LGL L
Sbjct: 66 RELPDEVVVPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPE-LSP 124
Query: 266 THQIDNCTEGCVVLARTQE----YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
H++D T G ++ +E Y ++F R + V K YLA + P
Sbjct: 125 AHRLDRLTAGVLLFTAQREVRGAYQTLFSRGL----VDKTYLARAA-----------VDP 169
Query: 322 INIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGR 381
+ PR+++ G + M+ P P ++ + S D Y + + TGR
Sbjct: 170 ALVFPRVLA-GRIVKHRGRMQAVCEPGP------PNALTEVELLSPDGLYRLRPR--TGR 220
Query: 382 THQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQ 441
THQ+R Q+A+ G PI+GD +Y P I + P + DD + A ++S+
Sbjct: 221 THQLRLQMASLGIPIIGDPLY-PNIIDVPADDFSTPLQLLAQRIEFDDPRTGARRVFVSR 279
Query: 442 HGME 445
++
Sbjct: 280 RTLD 283
>gi|118464649|ref|YP_883417.1| RNA pseudouridine synthase [Mycobacterium avium 104]
gi|118165936|gb|ABK66833.1| RNA pseudouridine synthase family protein [Mycobacterium avium 104]
Length = 287
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 30/236 (12%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+ ++ ++ + VV+DKP + ++ ++ R LGL L H++D T
Sbjct: 74 VPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPE-LSPAHRLDRLT 132
Query: 274 EGCVVLARTQE----YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLV 329
G ++ +E Y ++F R + V K YLA + P + PR++
Sbjct: 133 AGVLLFTARREVRGAYQTLFSRGL----VDKTYLARAA-----------VDPALVFPRVL 177
Query: 330 SEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQL 389
+ G + M+ P P ++ + S D Y + + TGRTHQ+R Q+
Sbjct: 178 A-GRIVKHRGRMQAVCEPGP------PNALTEVELLSPDGLYRLRPR--TGRTHQLRLQM 228
Query: 390 AACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGME 445
A+ G PI+GD +Y P I + P + DD + A ++S+ ++
Sbjct: 229 ASLGIPIIGDPLY-PNMIDVPADDFSTPLQLLAQRIEFDDPRTGARRVFVSRRTLD 283
>gi|421888050|ref|ZP_16319165.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia solanacearum K60-1]
gi|378966575|emb|CCF95913.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia solanacearum K60-1]
Length = 370
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 220 IIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
++ ++ +V++KPAG V G + + +A GL H++D T G
Sbjct: 130 VVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPR-AGIVHRLDKETSG 188
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEGWY 334
+V+ART + R+++ + VK+ YLAL P G + PI PR +
Sbjct: 189 LMVVARTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDA---PIGRDPR---DRTR 242
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
+ +E K P T K + D G R + +L TGRTHQ+R + G
Sbjct: 243 MAIIETASGK----PARTHFKTLDVIDLG---RAQVSLVQCQLETGRTHQIRVHFESEGH 295
Query: 395 PIVGDSMY 402
P++GD +Y
Sbjct: 296 PLLGDPVY 303
>gi|338732257|ref|YP_004670730.1| RNA pseudouridine synthase [Simkania negevensis Z]
gi|336481640|emb|CCB88239.1| uncharacterized RNA pseudouridine synthase yhcT [Simkania
negevensis Z]
Length = 212
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 24/143 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR 320
L H++D G V+ ART + S ++RE+K++K Y A L G + H++
Sbjct: 56 LTPVHRLDLPVSGLVLFARTSKSLSRLQAQMRERKIRKTYFARVEGRLKEKEGCLRHFIS 115
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVP-WPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
+ ++VS+ + V+ + + W D T+ +++L T
Sbjct: 116 HGSRRAQIVSQEQ--GKEAVLSYRVIKEWKDQTL-------------------LELELHT 154
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GR HQ+RAQL+ G PI GD Y
Sbjct: 155 GRYHQIRAQLSFMGHPIRGDVKY 177
>gi|339321252|ref|YP_004683774.1| ribosomal large subunit pseudouridine synthaseD [Mycoplasma bovis
Hubei-1]
gi|392430325|ref|YP_006471370.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma bovis
HB0801]
gi|338227377|gb|AEI90439.1| ribosomal large subunit pseudouridine synthaseD [Mycoplasma bovis
Hubei-1]
gi|392051734|gb|AFM52109.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma bovis
HB0801]
Length = 305
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLR---TTHQIDNCTEGCVVLA 280
+VL+KP+G V G D + + L T L H+ID T G +++A
Sbjct: 86 LVLNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDTNGLLRLGIVHRIDKDTSGLLIIA 145
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ E + + ++ ++K+ Y+A+ GI+ + + IN+ + ++ L +
Sbjct: 146 KDNETHNELAKMLKNHQIKRTYIAICE-----GILPNKVTKINLPIQRDAKNRKLMSIHK 200
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
V + + K + I++ + K +L TGRTHQ+R LA P+ GD+
Sbjct: 201 DGKSSVTY--VHLLKTFYIDNKPYSL------VKCELETGRTHQIRVHLAYIKHPVYGDN 252
Query: 401 MY------MPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEW 438
+Y + ++P K Q + SD E + E+
Sbjct: 253 IYGSHVDDFNQRLHAYRLSFIHPISKKQVDVYSDIPSEFDIAEY 296
>gi|384548070|ref|YP_005737323.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
ED133]
gi|298695119|gb|ADI98341.1| probable RNA pseudouridylate synthase [Staphylococcus aureus subsp.
aureus ED133]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|222110296|ref|YP_002552560.1| RluA family pseudouridine synthase [Acidovorax ebreus TPSY]
gi|221729740|gb|ACM32560.1| pseudouridine synthase, RluA family [Acidovorax ebreus TPSY]
Length = 334
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 16/230 (6%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDID-WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC-- 249
V+AG + V + P + + + + W ++ E +V+ KPAG V N +
Sbjct: 80 VKAGDRIAVEMRPTQQSQAFRPEQWPLDVVYEDEHILVIHKPAGLVVHPAPGNWSGTLLN 139
Query: 250 ATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
A A + P H++D T G +V+AR++ R I ++V + Y+AL
Sbjct: 140 ALLGRDAQAMQVPRAGIVHRLDKDTSGLMVVARSRSAMDALVRMIAAREVSRQYVALGWG 199
Query: 309 PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRD 368
PI PR ++ V++ + P +A + + D +
Sbjct: 200 GWTGAAHRSVHAPIGRDPR------NRLRMAVVDLAQHPGKEARTD--FDLIDAN----E 247
Query: 369 YAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPF 418
+ L TGRTHQ+R +A+ P+V D +Y A + L+ F
Sbjct: 248 EVCLVRCTLHTGRTHQIRVHMASIRHPLVADVLYGGAMAGPMHRQALHAF 297
>gi|182678295|ref|YP_001832441.1| RluA family pseudouridine synthase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634178|gb|ACB94952.1| pseudouridine synthase, RluA family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 350
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 38/196 (19%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP G +V G T +I++ A+ + H++D T G +++A+T+
Sbjct: 98 MVLNKPFGLAVQGGSGMTHHIDKMLASLPNERGDRPV---LVHRLDRDTSGVLLVAKTRR 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECK 344
+ R ++ +K+Y A+ G+ I++ YL + E ME K
Sbjct: 155 MAAELGEIFRSRQARKIYWAVVE-----GVPKPAQGRISL---------YLAKGEGMEDK 200
Query: 345 KVPWPDATVGKA---------YSIEDCGWPSRDYAYECKI---------KLLTGRTHQVR 386
+ P +A + ED YA K+ K +TGRTHQ+R
Sbjct: 201 RGPHGRDAEARAGLEKMRVAKHGEEDARHSVTYYAIVDKVPSRLAWLSMKPITGRTHQLR 260
Query: 387 AQLAACGAPIVGDSMY 402
A A G PI+GD Y
Sbjct: 261 AHAEAIGHPIIGDPKY 276
>gi|384550666|ref|YP_005739918.1| RluA, Pseudouridylate synthases, 23S RNA-specific [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302333515|gb|ADL23708.1| RluA, Pseudouridylate synthases, 23S RNA-specific [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|258423127|ref|ZP_05686021.1| pseudouridine synthase [Staphylococcus aureus A9635]
gi|387780914|ref|YP_005755712.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
LGA251]
gi|416842217|ref|ZP_11904900.1| RNA pseudouridylate synthase [Staphylococcus aureus O11]
gi|416848357|ref|ZP_11907717.1| RNA pseudouridylate synthase [Staphylococcus aureus O46]
gi|417891215|ref|ZP_12535281.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21200]
gi|417895653|ref|ZP_12539633.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21235]
gi|417903188|ref|ZP_12547041.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21269]
gi|418281683|ref|ZP_12894485.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21202]
gi|418560198|ref|ZP_13124719.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21252]
gi|418889639|ref|ZP_13443770.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418994560|ref|ZP_13542195.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG290]
gi|257846691|gb|EEV70711.1| pseudouridine synthase [Staphylococcus aureus A9635]
gi|323438855|gb|EGA96592.1| RNA pseudouridylate synthase [Staphylococcus aureus O11]
gi|323441699|gb|EGA99344.1| RNA pseudouridylate synthase [Staphylococcus aureus O46]
gi|341841469|gb|EGS82928.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21235]
gi|341850232|gb|EGS91358.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21269]
gi|341852592|gb|EGS93480.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21200]
gi|344178016|emb|CCC88498.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
LGA251]
gi|365172515|gb|EHM63199.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21202]
gi|371972741|gb|EHO90114.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21252]
gi|377744357|gb|EHT68335.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG290]
gi|377751944|gb|EHT75869.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|418901368|ref|ZP_13455423.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418917766|ref|ZP_13471724.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377702037|gb|EHT26363.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377749831|gb|EHT73775.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1267]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|386831437|ref|YP_006238091.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|417799822|ref|ZP_12446955.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21310]
gi|418655557|ref|ZP_13217409.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-105]
gi|334272599|gb|EGL90961.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21310]
gi|375036438|gb|EHS29510.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-105]
gi|385196829|emb|CCG16466.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|422825359|ref|ZP_16873538.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK678]
gi|324995861|gb|EGC27772.1| ribosomal large subunit pseudouridine synthase [Streptococcus
sanguinis SK678]
Length = 291
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 37/192 (19%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G + E + S +G T H++D T G V+ A+
Sbjct: 91 IIVNKPEGMKTHAN-EPTELALLNHVSAYVGETC--YVVHRLDKETSGAVLFAKNPFVLP 147
Query: 288 IFHRKIREKKVKKLYLALTTAPLP---------VGIMTHYMRPINIAPRLVSEGWYLCQL 338
I +R + ++++ + Y AL P +G H R + PR +G Y +
Sbjct: 148 ILNRLLEKREISREYWALVQGKFPSKKLIYKDKIGRDRHDRRKRLVDPR---KGLY-AET 203
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
V K+ +G+A + +C++K TGRTHQ+R LA G P++G
Sbjct: 204 HVTRLKQ-------LGQAALV------------KCQLK--TGRTHQIRVHLAHHGHPLIG 242
Query: 399 DSMYMPAAIAQL 410
D +Y P +L
Sbjct: 243 DPLYHPQPKGRL 254
>gi|312131061|ref|YP_003998401.1| ribosomal large subunit pseudouridine synthase d [Leadbetterella
byssophila DSM 17132]
gi|311907607|gb|ADQ18048.1| ribosomal large subunit pseudouridine synthase D [Leadbetterella
byssophila DSM 17132]
Length = 240
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP--LPVGIMTHYMR 320
L T H++D G V+ ART + + + ++++++K Y A+T G +TH++R
Sbjct: 54 LGTVHRLDRPVSGVVIFARTSKALTRMNELFKKRQIQKTYWAITMRKPEKKSGRLTHWLR 113
Query: 321 PINIAPRLVS-----EGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI 375
++ + + EG L+ T+ K + IE +
Sbjct: 114 KDSVQNKTEAFESEVEGAQRADLDYRYV-------GTLNKHHLIE--------------V 152
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMY 402
+TGR HQ+R QLA+ G PI GD Y
Sbjct: 153 NPITGRPHQIRVQLASMGTPIKGDVKY 179
>gi|357235730|ref|ZP_09123073.1| ribosomal large subunit pseudouridine synthase, RluD family protein
[Streptococcus criceti HS-6]
gi|356883712|gb|EHI73912.1| ribosomal large subunit pseudouridine synthase, RluD family protein
[Streptococcus criceti HS-6]
Length = 290
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 31/203 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G N E + S +G T H++D T G V+ A+
Sbjct: 91 IIVNKPEGMKTHANQPN-EIALLNHVSAYVGDTC--YVVHRLDKETSGLVLFAKNPFVLP 147
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI-----NIAPRLVSEGWYLCQLEVME 342
I +R + +KK+ + Y AL LP +T Y I + RL++ V
Sbjct: 148 ILNRLLEDKKISRQYWALAQGWLPKESIT-YRDKISRDRHDRRKRLITAKGQSAITHVKS 206
Query: 343 CKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K+ P YS+ +C +L TGRTHQ+R LA G I+GD +Y
Sbjct: 207 LKEYCGPKG----PYSLVNC-------------QLETGRTHQIRVHLAHHGHAIIGDPLY 249
Query: 403 --MPAAIAQLSS---PGLNPFGK 420
+PA L + L+PF +
Sbjct: 250 SKVPAERLMLHAHELSFLHPFSR 272
>gi|416255213|ref|ZP_11639089.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis O35E]
gi|326576921|gb|EGE26827.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis O35E]
Length = 355
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGL 259
H + P DID II E+ ++++KPAG V G T + + + L
Sbjct: 110 HSEDLPENIDID----IIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHL 165
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
H+ID T G +V+ART+ ++++K V + Y + +G + +
Sbjct: 166 PRA-GLVHRIDKDTTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCVA-----LGAVHEVL 219
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I + G + M K+ P T I + + Y+ I L T
Sbjct: 220 RHAQIDAPI---GRHSTHRTKMAVKQTGKPALT-----HIVNAKYLHERYSL-LDIHLKT 270
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R L+ G P+VGD +Y
Sbjct: 271 GRTHQIRVHLSYVGHPLVGDPVY 293
>gi|315916994|ref|ZP_07913234.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
gonidiaformans ATCC 25563]
gi|317058913|ref|ZP_07923398.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_5R]
gi|313684589|gb|EFS21424.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_5R]
gi|313690869|gb|EFS27704.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
gonidiaformans ATCC 25563]
Length = 289
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT----FASRALGLTTPLRTTHQI 269
+D I+ E+ ++L+K A TT ++ + A + + G T R +++
Sbjct: 69 MDIPLEIVYEDENLLILNKQANLVTHPTTKKVDATLANGVVAYFLKTTGKTMVPRFYNRL 128
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREK-KVKKLYLALTTAPL---------PVGIMTHYM 319
D T G +++ + Y + ++EK +V+K Y + + P+G + +
Sbjct: 129 DMNTTGLIIVTKNA-YSQAY---LQEKTEVRKSYQTIVKGIVEQDEFYITKPIGKVGEDL 184
Query: 320 RPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R I +A VSEG + V K+ P + T+ + L T
Sbjct: 185 RRIELA---VSEGGQEAKTFVKVLKRFPERNRTL-------------------LDVTLFT 222
Query: 380 GRTHQVRAQLAACGAPIVGDSMYMPA 405
GRTHQ+RA L+ G PIVGD +Y A
Sbjct: 223 GRTHQIRAHLSLEGYPIVGDDLYGGA 248
>gi|418307458|ref|ZP_12919167.1| RNA pseudouridine synthase, partial [Staphylococcus aureus subsp.
aureus 21194]
gi|365245635|gb|EHM86255.1| RNA pseudouridine synthase, partial [Staphylococcus aureus subsp.
aureus 21194]
Length = 190
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 39 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 91
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 92 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 142
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 143 VHLAEIGHPVIGDPLYGDSTLRQLE 167
>gi|49484092|ref|YP_041316.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425962|ref|ZP_05602386.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428627|ref|ZP_05605025.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431264|ref|ZP_05607641.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433944|ref|ZP_05610302.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436860|ref|ZP_05612904.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
M876]
gi|282904425|ref|ZP_06312313.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus C160]
gi|282906248|ref|ZP_06314103.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282909167|ref|ZP_06316985.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911473|ref|ZP_06319275.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914645|ref|ZP_06322431.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus M899]
gi|282919611|ref|ZP_06327346.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
C427]
gi|282924991|ref|ZP_06332657.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C101]
gi|283958603|ref|ZP_06376054.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Staphylococcus aureus subsp. aureus A017934/97]
gi|293503717|ref|ZP_06667564.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
58-424]
gi|293510738|ref|ZP_06669443.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
M809]
gi|293537280|ref|ZP_06671960.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus M1015]
gi|295428428|ref|ZP_06821057.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297590605|ref|ZP_06949243.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus MN8]
gi|384867180|ref|YP_005747376.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus TCH60]
gi|386729537|ref|YP_006195920.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 71193]
gi|387603183|ref|YP_005734704.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus ST398]
gi|404479193|ref|YP_006710623.1| RNA pseudouridylate synthase [Staphylococcus aureus 08BA02176]
gi|415682661|ref|ZP_11447977.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
CGS00]
gi|417887616|ref|ZP_12531739.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21195]
gi|418310788|ref|ZP_12922321.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21331]
gi|418562337|ref|ZP_13126795.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21262]
gi|418564584|ref|ZP_13129005.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21264]
gi|418582791|ref|ZP_13146867.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418596485|ref|ZP_13160044.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21342]
gi|418601977|ref|ZP_13165391.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21345]
gi|418891094|ref|ZP_13445212.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418898500|ref|ZP_13452569.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418909774|ref|ZP_13463766.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG149]
gi|418923552|ref|ZP_13477466.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418980566|ref|ZP_13528344.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus DR10]
gi|418982876|ref|ZP_13530583.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418986538|ref|ZP_13534221.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49242221|emb|CAG40928.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271656|gb|EEV03802.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275468|gb|EEV06955.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278212|gb|EEV08860.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
68-397]
gi|257282037|gb|EEV12174.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
E1410]
gi|257284211|gb|EEV14334.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
M876]
gi|282313357|gb|EFB43753.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus C101]
gi|282317421|gb|EFB47795.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
C427]
gi|282321826|gb|EFB52151.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus M899]
gi|282325168|gb|EFB55478.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327431|gb|EFB57726.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331540|gb|EFB61054.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282596043|gb|EFC01007.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus C160]
gi|283471121|emb|CAQ50332.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus ST398]
gi|283790752|gb|EFC29569.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Staphylococcus aureus subsp. aureus A017934/97]
gi|290920125|gb|EFD97193.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus M1015]
gi|291095383|gb|EFE25648.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
58-424]
gi|291466629|gb|EFF09150.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
M809]
gi|295127828|gb|EFG57465.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297575491|gb|EFH94207.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus MN8]
gi|312437685|gb|ADQ76756.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus TCH60]
gi|315195761|gb|EFU26148.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
CGS00]
gi|341857256|gb|EGS98071.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21195]
gi|365235946|gb|EHM76852.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21331]
gi|371973916|gb|EHO91260.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21262]
gi|371975721|gb|EHO93013.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21264]
gi|374397011|gb|EHQ68229.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21345]
gi|374397706|gb|EHQ68913.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21342]
gi|377703642|gb|EHT27956.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377703921|gb|EHT28233.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377709534|gb|EHT33787.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377733006|gb|EHT57054.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377733429|gb|EHT57472.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377751028|gb|EHT74963.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG149]
gi|377759957|gb|EHT83837.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|379991673|gb|EIA13140.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus DR10]
gi|384230830|gb|AFH70077.1| Ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 71193]
gi|404440682|gb|AFR73875.1| RNA pseudouridylate synthase [Staphylococcus aureus 08BA02176]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|419420199|ref|ZP_13960428.1| RNA pseudouridylate synthase [Propionibacterium acnes PRP-38]
gi|379978573|gb|EIA11897.1| RNA pseudouridylate synthase [Propionibacterium acnes PRP-38]
Length = 270
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 93/235 (39%), Gaps = 26/235 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDK 232
+G+ V EA + FR D T++ H + P + I+ E +V+DK
Sbjct: 12 EGRFVDEAGRVFR---RDSPFTPQTFVFFH---RDLPTETPVPAGIGILYSDERILVVDK 65
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRK 292
P S ++ ES LGL L H++D T G ++L R +++ +
Sbjct: 66 PHFLSSIPRGRHVLESVVVRLRTQLGLPE-LTVAHRLDRVTAGVLLLTRERKWRRPYQEM 124
Query: 293 IREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGW-----YLCQLEVMECKKVP 347
++V K Y + AP+ P GW + + +++ ++VP
Sbjct: 125 FERREVVKKYRLV--APV-------VHDPAREGIGATKNGWQVRSRIIKERGILQAREVP 175
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
V I CG YE + TGRTHQ+R + GAPIV D Y
Sbjct: 176 GVPNAVTDIVLIGKCGGLG---LYEASPR--TGRTHQIRLHMQRLGAPIVNDPFY 225
>gi|421898166|ref|ZP_16328533.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum MolK2]
gi|206589372|emb|CAQ36334.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum MolK2]
Length = 370
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 225 ESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
++ +V++KPAG V G + + +A GL H++D T G +V+A
Sbjct: 135 DTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPR-AGIVHRLDKETSGLMVVA 193
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEGWYLCQLE 339
RT + R+++ + VK+ YLAL P G + PI PR + + +E
Sbjct: 194 RTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDA---PIGRDPR---DRTRMAIIE 247
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
K P T K + D G R + +L TGRTHQ+R + G P++GD
Sbjct: 248 TASGK----PARTHFKTLDVIDLG---RAQVSLVQCQLETGRTHQIRVHFESEGHPLLGD 300
Query: 400 SMY 402
+Y
Sbjct: 301 PVY 303
>gi|255692700|ref|ZP_05416375.1| ribosomal large subunit pseudouridine synthase family protein
[Bacteroides finegoldii DSM 17565]
gi|260621534|gb|EEX44405.1| pseudouridine synthase, RluA family [Bacteroides finegoldii DSM
17565]
Length = 229
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPL-PVGIMTHYMR 320
L TH++D G V+ A+T + + + R +VKK Y A+ AP P G + H++
Sbjct: 51 LGVTHRLDRPVSGLVIFAKTGKALTRLNEMFRTSEVKKTYWAVVKNAPQEPEGELVHFL- 109
Query: 321 PINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTG 380
Y EV KK +G S +Y Y ++ L TG
Sbjct: 110 ----VRNEKQNKSYAYDKEVPNSKKAILHYRLIGH----------SENY-YLLEVDLKTG 154
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFG 419
R HQ+R QLA G PI GD Y SP NP G
Sbjct: 155 RHHQIRCQLAKMGCPIKGDLKY--------GSPRSNPDG 185
>gi|421148253|ref|ZP_15607913.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|394331396|gb|EJE57479.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
Length = 273
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|408676992|ref|YP_006876819.1| Ribosomal large subunit pseudouridine synthase A [Streptomyces
venezuelae ATCC 10712]
gi|328881321|emb|CCA54560.1| Ribosomal large subunit pseudouridine synthase A [Streptomyces
venezuelae ATCC 10712]
Length = 308
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 21/207 (10%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
G YL H + FP + + ++ E VV DKP + ++ E+ R
Sbjct: 78 GRYLWFH---RDFPAETPVPFPIGVVHRDERIVVADKPHFLATMPRGRHVTETALARLRR 134
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
LGL L+ H++D T G V+ E + R+++V+K Y A+ VG+
Sbjct: 135 ELGLPY-LQPAHRLDRLTAGLVLCVVRPEDRGAYQTLFRDRRVRKEYEAVAPYDPAVGL- 192
Query: 316 THYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKI 375
P+ + R+ E VM +++P + + G R ++
Sbjct: 193 -----PVTVRSRIEKERG------VMAARELPGEPNAESRIELVGRAGGLGR-----YRL 236
Query: 376 KLLTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R + G PI+ D +Y
Sbjct: 237 VPETGRTHQLRVHMNGLGLPILHDPIY 263
>gi|257791310|ref|YP_003181916.1| RluA family pseudouridine synthase [Eggerthella lenta DSM 2243]
gi|257475207|gb|ACV55527.1| pseudouridine synthase, RluA family [Eggerthella lenta DSM 2243]
Length = 344
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
G L H++D T G ++ A+ E IR++ V + YLAL G++ H
Sbjct: 131 GEDDRLGIVHRLDRDTSGLMLAAKNDETGYALMSDIRDRAVDRRYLALVH-----GVIAH 185
Query: 318 YMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIK 376
I+ AP +E + M + P + +E +RD Y K
Sbjct: 186 DTGMID-APIARAE----KERTRMAVRDTPSAREAITTFRVLERFEHGARDDGYTLIDCK 240
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
L TGRTHQ+R L P+VGD Y A
Sbjct: 241 LFTGRTHQIRVHLEYAKHPLVGDPAYTSGA 270
>gi|15924840|ref|NP_372374.1| hypothetical protein SAV1850 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927424|ref|NP_374957.1| hypothetical protein SA1668 [Staphylococcus aureus subsp. aureus
N315]
gi|21283520|ref|NP_646608.1| hypothetical protein MW1791 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486667|ref|YP_043888.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650639|ref|YP_186732.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus COL]
gi|87160591|ref|YP_494483.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88195673|ref|YP_500479.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148268322|ref|YP_001247265.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus JH9]
gi|150394384|ref|YP_001317059.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus JH1]
gi|151221954|ref|YP_001332776.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156980166|ref|YP_001442425.1| hypothetical protein SAHV_1835 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161510067|ref|YP_001575726.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253315181|ref|ZP_04838394.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus str. CF-Marseille]
gi|253735270|ref|ZP_04869435.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006638|ref|ZP_05145239.2| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus Mu50-omega]
gi|257793791|ref|ZP_05642770.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9781]
gi|258413728|ref|ZP_05682001.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9763]
gi|258420765|ref|ZP_05683704.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9719]
gi|258438426|ref|ZP_05689710.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9299]
gi|258443871|ref|ZP_05692210.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8115]
gi|258447326|ref|ZP_05695473.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A6300]
gi|258448191|ref|ZP_05696318.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus A6224]
gi|258452660|ref|ZP_05700659.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus A5948]
gi|258453376|ref|ZP_05701359.1| pseudouridine synthase [Staphylococcus aureus A5937]
gi|262050142|ref|ZP_06022996.1| hypothetical protein SAD30_1106 [Staphylococcus aureus D30]
gi|262052669|ref|ZP_06024861.1| hypothetical protein SA930_0805 [Staphylococcus aureus 930918-3]
gi|269203487|ref|YP_003282756.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ED98]
gi|282895148|ref|ZP_06303367.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8117]
gi|282924181|ref|ZP_06331856.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9765]
gi|282928588|ref|ZP_06336187.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A10102]
gi|284024896|ref|ZP_06379294.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus 132]
gi|294850278|ref|ZP_06791013.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9754]
gi|295406157|ref|ZP_06815965.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8819]
gi|296276018|ref|ZP_06858525.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus MR1]
gi|297207434|ref|ZP_06923871.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297244920|ref|ZP_06928797.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8796]
gi|300911518|ref|ZP_07128963.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus TCH70]
gi|384865055|ref|YP_005750414.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|385782115|ref|YP_005758286.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus 11819-97]
gi|387150991|ref|YP_005742555.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus 04-02981]
gi|415688560|ref|ZP_11452223.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
CGS01]
gi|415691678|ref|ZP_11453768.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
CGS03]
gi|417648781|ref|ZP_12298598.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21189]
gi|417651155|ref|ZP_12300918.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21172]
gi|417653613|ref|ZP_12303343.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21193]
gi|417797148|ref|ZP_12444347.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21305]
gi|417802046|ref|ZP_12449119.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21318]
gi|417893410|ref|ZP_12537440.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21201]
gi|417899160|ref|ZP_12543067.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21259]
gi|417900402|ref|ZP_12544288.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21266]
gi|418285452|ref|ZP_12898127.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21209]
gi|418313847|ref|ZP_12925331.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21334]
gi|418315699|ref|ZP_12927154.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21340]
gi|418319803|ref|ZP_12931174.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321069|ref|ZP_12932422.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418425033|ref|ZP_12998138.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427985|ref|ZP_13000983.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS2]
gi|418431711|ref|ZP_13004600.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418434671|ref|ZP_13006561.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS4]
gi|418437468|ref|ZP_13009257.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS5]
gi|418440380|ref|ZP_13012075.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS6]
gi|418443378|ref|ZP_13014975.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS7]
gi|418446446|ref|ZP_13017915.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS8]
gi|418449468|ref|ZP_13020847.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS9]
gi|418452268|ref|ZP_13023600.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS10]
gi|418455268|ref|ZP_13026523.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418458143|ref|ZP_13029339.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418567971|ref|ZP_13132328.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21272]
gi|418569322|ref|ZP_13133656.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21283]
gi|418573759|ref|ZP_13137942.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21333]
gi|418579775|ref|ZP_13143867.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418599037|ref|ZP_13162534.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21343]
gi|418638870|ref|ZP_13201145.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418640619|ref|ZP_13202841.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418643818|ref|ZP_13205974.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418646474|ref|ZP_13208578.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649106|ref|ZP_13211137.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418654908|ref|ZP_13216800.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418657772|ref|ZP_13219530.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418661034|ref|ZP_13222637.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418875781|ref|ZP_13430035.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418878768|ref|ZP_13433002.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418881536|ref|ZP_13435752.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418884508|ref|ZP_13438697.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418887212|ref|ZP_13441354.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418894826|ref|ZP_13448922.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418904183|ref|ZP_13458223.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906789|ref|ZP_13460813.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418912477|ref|ZP_13466456.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG547]
gi|418914939|ref|ZP_13468909.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920875|ref|ZP_13474806.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418926660|ref|ZP_13480552.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418929198|ref|ZP_13483084.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418932168|ref|ZP_13486000.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418934803|ref|ZP_13488624.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988898|ref|ZP_13536569.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991782|ref|ZP_13539442.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419773776|ref|ZP_14299764.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784774|ref|ZP_14310536.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-M]
gi|422743137|ref|ZP_16797130.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422745375|ref|ZP_16799316.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424767767|ref|ZP_18195077.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CM05]
gi|440707705|ref|ZP_20888392.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21282]
gi|440735288|ref|ZP_20914896.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443635252|ref|ZP_21119384.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21236]
gi|443638934|ref|ZP_21122960.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21196]
gi|448744307|ref|ZP_21726202.1| pseudouridine synthase [Staphylococcus aureus KT/Y21]
gi|13701643|dbj|BAB42936.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247622|dbj|BAB58012.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204961|dbj|BAB95656.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49245110|emb|CAG43576.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284825|gb|AAW36919.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus COL]
gi|87126565|gb|ABD21079.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87203231|gb|ABD31041.1| ribosomal large subunit pseudouridine synthase, RluD subfamily,
putative [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147741391|gb|ABQ49689.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus JH9]
gi|149946836|gb|ABR52772.1| pseudouridine synthase [Staphylococcus aureus subsp. aureus JH1]
gi|150374754|dbj|BAF68014.1| RNA pseudouridylate synthase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722301|dbj|BAF78718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368876|gb|ABX29847.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253726677|gb|EES95406.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
TCH130]
gi|257787763|gb|EEV26103.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9781]
gi|257839515|gb|EEV63986.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9763]
gi|257843369|gb|EEV67779.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9719]
gi|257848470|gb|EEV72461.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9299]
gi|257851277|gb|EEV75220.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8115]
gi|257853913|gb|EEV76869.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A6300]
gi|257858430|gb|EEV81306.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus A6224]
gi|257859635|gb|EEV82484.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus A5948]
gi|257864468|gb|EEV87213.1| pseudouridine synthase [Staphylococcus aureus A5937]
gi|259159418|gb|EEW44470.1| hypothetical protein SA930_0805 [Staphylococcus aureus 930918-3]
gi|259161767|gb|EEW46355.1| hypothetical protein SAD30_1106 [Staphylococcus aureus D30]
gi|262075777|gb|ACY11750.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus ED98]
gi|282589797|gb|EFB94882.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A10102]
gi|282592976|gb|EFB97978.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9765]
gi|282762492|gb|EFC02633.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8117]
gi|285817530|gb|ADC38017.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus 04-02981]
gi|294822894|gb|EFG39328.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A9754]
gi|294969154|gb|EFG45175.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8819]
gi|296887897|gb|EFH26793.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297178000|gb|EFH37248.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus A8796]
gi|300887150|gb|EFK82350.1| ribosomal large subunit pseudouridine synthase [Staphylococcus
aureus subsp. aureus TCH70]
gi|312830222|emb|CBX35064.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130506|gb|EFT86492.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
CGS03]
gi|315196801|gb|EFU27145.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320141300|gb|EFW33145.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143572|gb|EFW35352.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329727339|gb|EGG63795.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21172]
gi|329729507|gb|EGG65909.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21189]
gi|329732958|gb|EGG69302.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21193]
gi|334267392|gb|EGL85853.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21305]
gi|334275627|gb|EGL93913.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21318]
gi|341845964|gb|EGS87162.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21259]
gi|341848276|gb|EGS89442.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21266]
gi|341854991|gb|EGS95850.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21201]
gi|364523104|gb|AEW65854.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365170201|gb|EHM61227.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21209]
gi|365226275|gb|EHM67496.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365234880|gb|EHM75803.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21334]
gi|365239723|gb|EHM80524.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21232]
gi|365242833|gb|EHM83530.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21340]
gi|371981048|gb|EHO98241.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21333]
gi|371981082|gb|EHO98274.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21272]
gi|371985776|gb|EHP02829.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21283]
gi|374398225|gb|EHQ69411.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21343]
gi|375014214|gb|EHS07911.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375020347|gb|EHS13883.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375020664|gb|EHS14181.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375027588|gb|EHS20950.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375030540|gb|EHS23853.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375032792|gb|EHS26012.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375039613|gb|EHS32535.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375040066|gb|EHS32971.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-111]
gi|377693654|gb|EHT18024.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694033|gb|EHT18400.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377695314|gb|EHT19676.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377712269|gb|EHT36489.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377713163|gb|EHT37375.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377716919|gb|EHT41097.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377721713|gb|EHT45843.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG547]
gi|377721918|gb|EHT46047.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377723730|gb|EHT47854.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377730877|gb|EHT54943.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377739110|gb|EHT63119.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377741105|gb|EHT65100.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377741240|gb|EHT65234.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377755595|gb|EHT79494.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377762425|gb|EHT86289.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377763730|gb|EHT87585.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377769332|gb|EHT93104.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770102|gb|EHT93867.1| RNA pseudouridylate synthase family protein [Staphylococcus aureus
subsp. aureus CIGC128]
gi|383363743|gb|EID41070.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383972421|gb|EID88465.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CO-23]
gi|387714969|gb|EIK03078.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387717192|gb|EIK05211.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS2]
gi|387718203|gb|EIK06188.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS1]
gi|387724243|gb|EIK11908.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS4]
gi|387726377|gb|EIK13942.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS5]
gi|387729483|gb|EIK16925.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS6]
gi|387733867|gb|EIK21026.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS8]
gi|387735591|gb|EIK22703.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS9]
gi|387736135|gb|EIK23238.1| RluA family pseudouridine synthase [Staphylococcus aureus subsp.
aureus VRS7]
gi|387743911|gb|EIK30694.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387744015|gb|EIK30793.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS10]
gi|387745946|gb|EIK32693.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus VRS11b]
gi|402348747|gb|EJU83722.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423910|emb|CCJ11321.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425899|emb|CCJ13286.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427887|emb|CCJ15250.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429876|emb|CCJ27041.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431862|emb|CCJ19177.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433857|emb|CCJ21142.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435849|emb|CCJ23109.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437832|emb|CCJ25075.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|436430856|gb|ELP28213.1| ribosomal large subunit pseudouridine synthase D [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436505760|gb|ELP41639.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21282]
gi|443408032|gb|ELS66561.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21196]
gi|443409826|gb|ELS68316.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus 21236]
gi|445562367|gb|ELY18542.1| pseudouridine synthase [Staphylococcus aureus KT/Y21]
Length = 273
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|395243771|ref|ZP_10420751.1| Ribosomal large subunit pseudouridine synthase [Lactobacillus
hominis CRBIP 24.179]
gi|394484005|emb|CCI81759.1| Ribosomal large subunit pseudouridine synthase [Lactobacillus
hominis CRBIP 24.179]
Length = 288
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 183 TFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
F+I DQI ++ HP + P + D I+ ++ ++++KP+G T
Sbjct: 53 NFKIKQDDQIKIILDHVESLQHPYK-PSGHLPD----IVYEDDNVLIINKPSGQK---TH 104
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
N+ E+ A L H++D T G +++ + I + ++ K + Y
Sbjct: 105 PNLFETDTALNDAAYYLGYSPYIVHRLDMLTSGLLLITKNPAVVPILNSQLTTKTFHRDY 164
Query: 303 LAL--TTAPLP-VGIMTHYM--RPINIAPRLVSEGWY--LCQLEVMECKKVPWPDATVGK 355
A T + +P GI+ + P + R+VS + +V+E
Sbjct: 165 YAKVSTNSKIPDQGIIDLAIAHDPDDQRKRMVSPSGLTAITHYQVIEK------------ 212
Query: 356 AYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMP 404
+ DY K+ L TGRTHQ+R LAA GAPI+GD +Y P
Sbjct: 213 ----------NTDYKL-LKVTLETGRTHQIRVHLAAIGAPIIGDPLYNP 250
>gi|325831406|ref|ZP_08164660.1| pseudouridine synthase, RluA family [Eggerthella sp. HGA1]
gi|325486660|gb|EGC89108.1| pseudouridine synthase, RluA family [Eggerthella sp. HGA1]
Length = 344
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
G L H++D T G ++ A+ E IR++ V + YLAL G++ H
Sbjct: 131 GEDDRLGIVHRLDRDTSGLMLAAKNDETGYALMSDIRDRAVDRRYLALVH-----GVIAH 185
Query: 318 YMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC-KIK 376
I+ AP +E + M + P + +E +RD Y K
Sbjct: 186 DTGMID-APIARAEK----ERTRMAVRDTPSAREAITTFRVLERFEHGARDDGYTLIDCK 240
Query: 377 LLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
L TGRTHQ+R L P+VGD Y A
Sbjct: 241 LFTGRTHQIRVHLEYAKHPLVGDPAYTSGA 270
>gi|425736029|ref|ZP_18854338.1| RluA family pseudouridine synthase [Brevibacterium casei S18]
gi|425478711|gb|EKU45897.1| RluA family pseudouridine synthase [Brevibacterium casei S18]
Length = 307
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 49/203 (24%)
Query: 219 RIIAVTESHVVLDKPAG------------TSVGGTTDNIEESCATFASRALGLTTPLRTT 266
RI+ +S VV+DKP G T VGG + A F G +
Sbjct: 82 RIVHDDDSFVVVDKPVGVAAHPAIGWTGPTVVGGL------AAAGFRIATSGASERQGIV 135
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
++D T G +V+A+++ S+ R +++ V K Y AL LP ++ PI P
Sbjct: 136 QRLDVGTSGLMVVAKSEYAYSVLKRAFKDRTVSKTYHALVQG-LPDPVLGTIDAPIARHP 194
Query: 327 R------LVSEGWY-LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
R + SEG + + EV+E + A +I L T
Sbjct: 195 RHDGLYAVHSEGKHAITHYEVIEAHR-----------------------RAALLEIHLET 231
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R +A P GD Y
Sbjct: 232 GRTHQIRVHFSALKHPCAGDLPY 254
>gi|15602857|ref|NP_245929.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Pm70]
gi|421263734|ref|ZP_15714761.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425065858|ref|ZP_18468978.1| Ribosomal large subunit pseudouridine synthase [Pasteurella
multocida subsp. gallicida P1059]
gi|20139710|sp|Q9CM51.1|RLUC_PASMU RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|12721319|gb|AAK03076.1| RluC [Pasteurella multocida subsp. multocida str. Pm70]
gi|401689183|gb|EJS84664.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404383353|gb|EJZ79807.1| Ribosomal large subunit pseudouridine synthase [Pasteurella
multocida subsp. gallicida P1059]
Length = 326
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNC 272
+I+ E +VL+KP+G +V G + + E+ T A L H++D
Sbjct: 97 LEKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRD 152
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G + + + AP L +E
Sbjct: 153 TSGILLVAKKRSALRSLHEQLREKTVQKDYLALVR-----GQWQSHCKVVK-APLLKNE- 205
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
L E ++ + P T +SIE+ +YA K +TGRTHQ+R
Sbjct: 206 --LSSGERIVRVSEQGKPSET---RFSIEE----RYEYATLVKASPVTGRTHQIRVHTQY 256
Query: 392 CGAPIVGDSMY 402
G PI D Y
Sbjct: 257 AGHPIALDDKY 267
>gi|379021610|ref|YP_005298272.1| ribosomal large subunitpseudouridine synthase D-like protein
[Staphylococcus aureus subsp. aureus M013]
gi|418951835|ref|ZP_13503905.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830919|gb|AEV78897.1| ribosomal large subunitpseudouridine synthase D-like protein
[Staphylococcus aureus subsp. aureus M013]
gi|375371306|gb|EHS75088.1| pseudouridine synthase, RluA family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 273
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
H++D T G +++A+ I R + + + ++Y A A LP ++P I
Sbjct: 122 HRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLP-------LKPQTIDM 174
Query: 327 RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVR 386
+ + ++ + V + K C + +IKL TGRTHQ+R
Sbjct: 175 PIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVC---------QLEIKLDTGRTHQIR 225
Query: 387 AQLAACGAPIVGDSMYMPAAIAQLS 411
LA G P++GD +Y + + QL
Sbjct: 226 VHLAEIGHPVIGDPLYGDSTLRQLE 250
>gi|417853665|ref|ZP_12499021.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338219152|gb|EGP04848.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 326
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+I+ E +VL+KP+G +V G + + E+ T A L H++D
Sbjct: 97 LEKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRD 152
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G + + + AP L +E
Sbjct: 153 TSGILLVAKKRSALRSLHEQLREKTVQKDYLALVR-----GQWQSHCKVVK-APLLKNE- 205
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
L E ++ + P T +SIE+ +YA K +TGRTHQ+R
Sbjct: 206 --LSSGERIVRVSEQGKPSET---RFSIEE----RYEYATLVKASPVTGRTHQIRVHTQY 256
Query: 392 CGAPIVGDSMY 402
G PI D Y
Sbjct: 257 AGHPIALDDKY 267
>gi|313885034|ref|ZP_07818786.1| pseudouridine synthase, RluA family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619725|gb|EFR31162.1| pseudouridine synthase, RluA family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 296
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 31/156 (19%)
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
++D T G +++A+ + + F ++IR K +KK Y A
Sbjct: 132 RLDRDTSGLMLIAKHRLAHAYFDQQIRNKTIKKYYYA----------------------- 168
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCG-----WPSRDY--AYECKIKLLTG 380
+SEG + +++ PD+ + + + W Y A K++LLTG
Sbjct: 169 -ISEGIDWPREGLIDAPIGRHPDSIIQRRVDVSGRPALTRFWVQDKYPEATLLKLQLLTG 227
Query: 381 RTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLN 416
RTHQ+R LA G P+VGD++Y + Q+ L+
Sbjct: 228 RTHQIRVHLAHLGGPLVGDTLYGGSYQDQIQRQALH 263
>gi|295696843|ref|YP_003590081.1| RluA family pseudouridine synthase [Kyrpidia tusciae DSM 2912]
gi|295412445|gb|ADG06937.1| pseudouridine synthase, RluA family [Kyrpidia tusciae DSM 2912]
Length = 327
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 26/194 (13%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V++KP G V G + +A R G P R +++D T G V++A+
Sbjct: 89 EDVLVVNKPPGMLVHPTKGVAAGTLANGVVYAWRLTGSYRPFRPLNRLDRDTSGLVLIAK 148
Query: 282 TQEYCSIFHRKIR--EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE-GWYLCQL 338
Q R +R E ++ A L H + R+V++ GW +
Sbjct: 149 NQFAHQRLSRDLRFVEGGRSPVFGADEAERLDGVRRVHREYAALVQGRVVADRGWIDLPI 208
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVRAQ 388
+ D G + G +R + AY K++L TGRTHQ+R
Sbjct: 209 DR---------DPNHGNRRQVAPAGRRARTRFEVAERVGNAAY-LKVRLQTGRTHQIRVH 258
Query: 389 LAACGAPIVGDSMY 402
LA G P++GD++Y
Sbjct: 259 LAELGHPVIGDTLY 272
>gi|302526188|ref|ZP_07278530.1| ribosomal pseudouridine synthase [Streptomyces sp. AA4]
gi|302435083|gb|EFL06899.1| ribosomal pseudouridine synthase [Streptomyces sp. AA4]
Length = 309
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 26/232 (11%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
+D G+++ H + P + ++ ++ + +V+DKP + ++ E+
Sbjct: 65 IDAAYVPGSFIWFH---RDLPDEVPVPFDVTVLHRDDHLLVVDKPHFLATIPRGRHVLET 121
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R+L L L H++D T G V+ T + R++ V K Y A+ A
Sbjct: 122 ALVRLRRSLDLPA-LSPAHRLDRVTAGLVMFVITPSARGAYQTMFRDRLVHKEYEAI--A 178
Query: 309 PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRD 368
P P PR+V + + V+ ++VP P +E RD
Sbjct: 179 P---------YDPTLELPRVV-RSRIVKERGVLAAQEVPGPPNAESTVELLE-----HRD 223
Query: 369 YAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
++ TGRTHQ+R + + G PI+GD Y +L LN F K
Sbjct: 224 GLGRYRLTPATGRTHQLRVHMCSLGIPILGDDFY-----PELHEKPLNDFTK 270
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,947,841,728
Number of Sequences: 23463169
Number of extensions: 337812762
Number of successful extensions: 724867
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 2585
Number of HSP's that attempted gapping in prelim test: 717867
Number of HSP's gapped (non-prelim): 7886
length of query: 483
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 336
effective length of database: 8,910,109,524
effective search space: 2993796800064
effective search space used: 2993796800064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)