BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011530
(483 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVS0|PUS6_ARATH RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana
GN=At4g21770 PE=2 SV=1
Length = 472
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/477 (65%), Positives = 377/477 (79%), Gaps = 16/477 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNV-VLSFSSSNRNFVCESWKRHVFT 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTT--PLFRSNKHSPRFISSPKRFTCLS-----LL 55
Query: 66 HTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
TD+ ++ S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 56 KTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
IEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY A
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 295
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIE 360
L APLP+GI++HYMRP N+APRLV+E GW+LCQLEV+ECKK+PWPDA K + IE
Sbjct: 296 LAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIE 355
Query: 361 DCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGK 420
DCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P NP+GK
Sbjct: 356 DCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGK 415
Query: 421 CQKEYASDDD-KEMAVIEWISQHGMEPSVAIGLQACHISW--DDGECCYEARSPWWR 474
+K Y +++ KE AV EWI +HG EP V IGLQAC ISW DDGE YEA +PWWR
Sbjct: 416 AKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472
>sp|A3BN26|PUS6_ORYSJ RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os07g0660400 PE=2 SV=1
Length = 477
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 265/403 (65%), Positives = 322/403 (79%), Gaps = 6/403 (1%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
GL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALTTAP+ GI+TH
Sbjct: 246 GLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITH 305
Query: 318 YMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
YMRPIN APRLVSE GW++CQ+E+++CKKVPWP + + K + +++CGWP ++ AYEC
Sbjct: 306 YMRPINRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWPQQEAAYEC 365
Query: 374 KIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEM 433
KI LLTG+THQ+RAQLAA G PIVGDS YM AA+A + +P +NPFG+ + Y S+D+K
Sbjct: 366 KINLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNYDSEDEKAA 425
Query: 434 AVIEWISQHGMEPSVAIGLQACHISWD-DGE-CCYEARSPWWR 474
AV WIS HG EP IGLQA ISWD +GE Y+A PWWR
Sbjct: 426 AVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWWR 468
>sp|P57430|RLUC_BUCAI Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluC PE=3 SV=1
Length = 314
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
FP + + +RI+ ++++KP+G +V G + + + + L L H
Sbjct: 82 FPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGS-GLNFGVIEYFRKLRPLNKFLELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
+ID T G ++LA+ + H ++REKK+KK Y+AL P I +
Sbjct: 141 RIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWPDHI------------K 188
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL---------- 377
+SE Q + + K I+ G PS Y ++ K K
Sbjct: 189 KISEPLLKIQFKNKQ------------KMVLIDKKGKPSETY-FQIKKKFSSSTLLSIIP 235
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMY 402
TGRTHQ+R G PI D Y
Sbjct: 236 KTGRTHQIRVHALHAGHPIFFDKRY 260
>sp|Q8K9J8|RLUC_BUCAP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluC PE=3 SV=1
Length = 314
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP+G +V G + I + + L L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGS-GINLGVIEYFRKIRPLEKFLELVHRIDRDTSGVLMLAKKRRSLL 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVP 347
H++IREKKV+K Y+AL P+ + R VSE L+ + K +
Sbjct: 161 SLHKQIREKKVQKKYIALVHGLWPLSL------------RKVSEPLLKTHLKNKQRKILI 208
Query: 348 WPDATVGKAYSIEDCGWPSRDYAYECKIKLL--TGRTHQVRAQLAACGAPIVGDSMY 402
+ + Y + Y + + + TGRTHQ+R G PI+ D Y
Sbjct: 209 NKEGKPAETYF-----KIKKQYLFTTLVSITPKTGRTHQIRVHTLHAGHPILFDKRY 260
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+G V G S +F AL P L H+ID T G +++A+
Sbjct: 106 LVLNKPSGIGVHGG------SGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKK 159
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI--APRLVSEGWYLCQLEV 340
+ H ++REK V+K YLAL + + IN+ AP L +E +
Sbjct: 160 RSALRALHEQLREKVVQKDYLAL--------VRGQWQAHINVIKAPLLKNE--LQSGERI 209
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
++ + P T +SIE+ +P+ A K +TGRTHQ+R G PI D
Sbjct: 210 VKVSEQGKPSET---RFSIEER-YPN---ATLIKASPITGRTHQIRVHTQYAGHPIACDD 262
Query: 401 MYMPAAI-AQLSSPGLN 416
Y A A+L GLN
Sbjct: 263 RYGDQAFDAKLKQAGLN 279
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 21/181 (11%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G D + F AL H++D T G +V+AR
Sbjct: 97 EQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVVAR 156
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVM 341
T + + ++ ++V + YLA+ L G + PI+ PR ++ V
Sbjct: 157 TVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANA--PIDRHPR------DRLKMAVR 208
Query: 342 ECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSM 401
+ + DA Y + + A EC+++ TGRTHQ+R +A +PIVGD +
Sbjct: 209 DDGR----DAVT--HYRLRERFRAH--TALECRLE--TGRTHQIRVHMAHLKSPIVGDPL 258
Query: 402 Y 402
Y
Sbjct: 259 Y 259
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluC PE=3 SV=1
Length = 315
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFA--SRALGLTTPLRTTHQ 268
I +N+ I+ ++L+KP+G SV G + E+ +R L L H+
Sbjct: 89 IIFNNMILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPYNRYLDLV------HR 142
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRL 328
+D T G +++A+ + H ++REKK+KK Y+AL P I+ +P
Sbjct: 143 LDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWP-DILKSISKP------- 194
Query: 329 VSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVR 386
L + + K + D GK SI + Y I + +TGRTHQ+R
Sbjct: 195 ------LLKTSSRKNKNIVKIDPK-GKE-SITHFNIKKK-YTKNTLISITPITGRTHQIR 245
Query: 387 AQLAACGAPIVGDSMY 402
L PIV D+ Y
Sbjct: 246 VHLLHLNYPIVLDAKY 261
>sp|Q9CK02|RLUA_PASMU Ribosomal large subunit pseudouridine synthase A OS=Pasteurella
multocida (strain Pm70) GN=rluA PE=3 SV=1
Length = 219
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 19/193 (9%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ + VV++KP+G SV G +S + G P H++D T G ++
Sbjct: 16 IVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEP---AHRLDMSTSGLIL 72
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A ++ R+ RE++ KK Y AL G + +N+ +C
Sbjct: 73 FALSKVADRELKRQFREREPKKHYQALVW-----GHLEEDQGEVNLP--------LICDW 119
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVG 398
E +K+ + +P+ K+ +TGR+HQ+R + A G PI+G
Sbjct: 120 ENRPRQKICFERGKPALTLYEVLARYPNN--TTRVKLTPITGRSHQLRLHMLALGHPILG 177
Query: 399 DSMYMPAAIAQLS 411
D Y P LS
Sbjct: 178 DKFYAPPQAKALS 190
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++++KPAG + D + A + + G T +R H++D T G +V A+ +
Sbjct: 93 LIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRL 152
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL---------PVG-IMTHYMRPINIAPRLVSEGWY 334
+I +++ +K +K+ Y A+ L P+G +H R R VS G
Sbjct: 153 AHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTR------RRVSPGGQ 206
Query: 335 --LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAAC 392
+ +VM +++ +++L TGRTHQ+R LA+
Sbjct: 207 TAVTHFKVMASN---------------------AKERLSLVELELETGRTHQIRVHLASL 245
Query: 393 GAPIVGDSMY 402
G P+ GDS+Y
Sbjct: 246 GHPLTGDSLY 255
>sp|P43930|Y042_HAEIN Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0042 PE=3 SV=1
Length = 224
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++K G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKSEGISVH--KDQEEQGLTELVAKQLNVP-KVWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTTA--PLPVGIMTHYMRPINIAPRLVSEG-WYLCQLEVMECK 344
F R E K+ K YLAL+ G++ M+ EG W LCQ +
Sbjct: 70 EFSRLFSEHKIHKTYLALSNQKPKKKQGLIIGDMKK-------AREGAWKLCQTK----- 117
Query: 345 KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
D + C R + +K TG+THQ+R + + G+PI+GD +Y
Sbjct: 118 -----DNPAITRFESVSCEPNLRLFI----LKPQTGKTHQLRVAMKSLGSPILGDGLY 166
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 225 ESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+ HV V+DKPAG V G D + F L H++D T G +V+A
Sbjct: 96 DDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKDTSGVMVVA 155
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
RT + + ++ + V + YLA+ L G PI+ PR ++ V
Sbjct: 156 RTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADA--PIDRHPR------DRLKMAV 207
Query: 341 MECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDS 400
+ + DA Y + + A EC+++ TGRTHQ+R +A +PIVGD
Sbjct: 208 RDDGR----DAVT--HYRLRERFRAH--TALECRLE--TGRTHQIRVHMAHLKSPIVGDP 257
Query: 401 MY 402
+Y
Sbjct: 258 LY 259
>sp|P47610|Y370_MYCGE Uncharacterized RNA pseudouridine synthase MG370 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG370 PE=3 SV=1
Length = 323
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 219 RIIAVTESHVVLDKPAGT--------SVGGTTDNIEESCA--TFASRALGLTTPLRTTHQ 268
+II E+ +V+DKP G S+ ++ + + C F S L H+
Sbjct: 89 KIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF--AHR 146
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPR 327
ID T G V+ A+T + ++ + + K Y L +G+ T Y + N
Sbjct: 147 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHLGLQTAYWKKDN---- 202
Query: 328 LVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRA 387
+ G ++ K P+P+A + E+ + ++ I+L++GRTHQ+RA
Sbjct: 203 --NNG-------IVTVKWKPFPEAKKISTF-FENSSYIAQKDMSLITIRLISGRTHQIRA 252
Query: 388 QLAACGAPIVGDSMY 402
L +VGD Y
Sbjct: 253 CLNLFSNQLVGDKKY 267
>sp|Q9PET9|RLUD_XYLFA Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1
Length = 331
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 85/217 (39%), Gaps = 29/217 (13%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESC 249
V G +R+ V P D I+ E VL+KPAG V G D +
Sbjct: 65 VYGGEVVRLQVVPDIRTDAVPQDIPLDILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNA 124
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
AL H++D T G +V+ART + + ++ ++V + YLA+ +
Sbjct: 125 LLHRDPALAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSA 184
Query: 310 LPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKA----YSIEDCGWP 365
LVS G +E ++ + GK Y + +
Sbjct: 185 ------------------LVSGGTVNAAIERHPRDRLRMAVSDTGKEAVTHYRLRERFRA 226
Query: 366 SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
A EC++ TGRTHQ+R +A PIVGD +Y
Sbjct: 227 H--TALECRLD--TGRTHQIRVHMAHLRHPIVGDRLY 259
>sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB2 PE=1 SV=1
Length = 591
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFP-RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
++D I+ G + VH P ID I+ E +V+DKP+ V T
Sbjct: 134 NLDTIIRDGDLITHKVHRHEPPVTSKPID----IVFEDEDILVIDKPSSIPVHPTGRYRF 189
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ R LG + + +++D T G + LA+T +++ ++V K Y+A
Sbjct: 190 NTITKMLERQLGYS--VHPCNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARV 247
Query: 307 TAPLPVGIMTHYMRPI-NIAPRLVSEGWYLCQLEVMECK--KVPWPDATVGKAYSIEDCG 363
P+GI+ +P+ ++ P++ +C++ K K + + SI C
Sbjct: 248 KGEFPIGIV-EVDKPVRSVNPKVALNA--VCEMSDENAKHAKTVFQRVSYDGQTSIVKC- 303
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
K LTGRTHQ+R L G PI D +Y
Sbjct: 304 ------------KPLTGRTHQIRVHLQYLGFPIANDPIY 330
>sp|P59831|RLUA_HAEDU Ribosomal large subunit pseudouridine synthase A OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluA PE=3 SV=1
Length = 222
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
VV++KP+G SV G +S T + G P H++D T G ++LA ++
Sbjct: 24 VVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAEP---AHRLDMATSGIILLALSKVAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKV 346
R+ R+++ KK Y+AL L G IN +C E +K+
Sbjct: 81 KELKRQFRDREPKKHYIALLWGKL--GDRVGQTGEINFP--------LICDWENRPRQKI 130
Query: 347 PWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ KA + + + K +TGR+HQ+R A G PI+GD Y
Sbjct: 131 CYERGK--KATTHYEVLEHLANNTTRVKFTPITGRSHQLRVHSLALGHPIIGDKFY 184
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNC 272
+I+ E +VL+KP+G +V G + + E+ T A L H++D
Sbjct: 97 LEKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRD 152
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
T G +++A+ + H ++REK V+K YLAL G + + + AP L +E
Sbjct: 153 TSGILLVAKKRSALRSLHEQLREKTVQKDYLALVR-----GQWQSHCKVVK-APLLKNE- 205
Query: 333 WYLCQLE-VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
L E ++ + P T +SIE+ +YA K +TGRTHQ+R
Sbjct: 206 --LSSGERIVRVSEQGKPSET---RFSIEE----RYEYATLVKASPVTGRTHQIRVHTQY 256
Query: 392 CGAPIVGDSMY 402
G PI D Y
Sbjct: 257 AGHPIALDDKY 267
>sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3
SV=1
Length = 331
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 221 IAVTESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I + HV V++KPAG V G D + AL H++D T G
Sbjct: 92 ILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTSGV 151
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLC 336
+V+ART + + ++ ++V + YLA+ + L G + I PR
Sbjct: 152 MVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNA--AIERHPR------DRL 203
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPI 396
++EV + K + + + A EC++ TGRTHQ+R +A PI
Sbjct: 204 RMEVSDTGKEAVTHYRLRERFRAH--------TALECRLD--TGRTHQIRVHMAHLRHPI 253
Query: 397 VGDSMY 402
VGD +Y
Sbjct: 254 VGDRLY 259
>sp|Q8XYX8|RLUD_RALSO Ribosomal large subunit pseudouridine synthase D OS=Ralstonia
solanacearum (strain GMI1000) GN=rluD PE=3 SV=1
Length = 358
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 225 ESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
++ +V++KPAG V G + + +A GL H++D T G +V+A
Sbjct: 123 DTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPR-AGIVHRLDKETSGLMVVA 181
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSEGWYLCQLE 339
RT + R+++ + VK+ YLAL P G + PI PR + + +E
Sbjct: 182 RTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDA---PIGRDPR---DRTRMAIIE 235
Query: 340 VMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
K P T K + D G R + +L TGRTHQ+R + G P++GD
Sbjct: 236 TASGK----PARTHFKTLDVVDLG---RAQVSLVQCQLETGRTHQIRVHFESEGHPLLGD 288
Query: 400 SMY 402
+Y
Sbjct: 289 PVY 291
>sp|P53294|PUS6_YEAST tRNA pseudouridine(31) synthase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUS6 PE=1 SV=1
Length = 404
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I+ ES +V+DKP+G V T + I E AL +++D T G
Sbjct: 121 IVFEDESILVIDKPSGIPVHPTGQFYQNTITELLKLHGVDAL-------PCYRLDKITSG 173
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
++LA+ + + IR + + K+YLA P + + A E
Sbjct: 174 LLILAKNSQSAGEIQKSIRSRDMIKIYLARVKGRFP---HSELILDNENAAETTFEDTSK 230
Query: 336 CQLEVMECKKV-PWPDATVGKAYSIEDCG--WPSRDYAYECKI----KLLTGRTHQVRAQ 388
+E+ + P VG + S + +P R +++ + K +TGRTHQ+R
Sbjct: 231 VTVEMTPIYSIDPKRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIH 290
Query: 389 LAACGAPIVGDSMY 402
LA G PIV DS+Y
Sbjct: 291 LARLGHPIVNDSVY 304
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
D I+ E +V+DKPAG V G D + + + H++D
Sbjct: 80 DIELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDK 139
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
T G +V+A+T E + +++ + V ++Y A+ +G++T I +
Sbjct: 140 DTTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIV-----IGVITSGG---TIDAPIGRH 191
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G ++ V++ KV V + + R + + ++KL TGRTHQ+R ++
Sbjct: 192 GVQRQKMAVVDAGKVAVSHYRVLERF---------RAHTH-TRVKLETGRTHQIRVHMSH 241
Query: 392 CGAPIVGDSMY 402
G P+VGD +Y
Sbjct: 242 IGYPLVGDPVY 252
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 31/185 (16%)
Query: 229 VLDKPAGTSV-------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
V++KPAG V GT N A + A+G H++D T G +V+AR
Sbjct: 102 VINKPAGMVVHPAPGHPRGTLVN--ALLARYPDLAIGGELRPGIVHRLDRDTSGLLVIAR 159
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLCQLEV 340
+ + + ++++K+Y AL P G + PI PR
Sbjct: 160 HDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDA---PIGRDPR------------- 203
Query: 341 MECKKVPWPDATVGKA-YSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGD 399
+ PD + Y + D DY+ +++L TGRTHQ+R L G PIVGD
Sbjct: 204 DRLRMAVVPDGRPARTHYRLLDTFG---DYSL-LEVQLETGRTHQIRVHLRHLGYPIVGD 259
Query: 400 SMYMP 404
+Y P
Sbjct: 260 PVYGP 264
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 83/217 (38%), Gaps = 52/217 (23%)
Query: 220 IIAVTESHVVLDKPAGTSV--------GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
I+ E ++++KPAG V G + + C A G+ P H++D
Sbjct: 100 ILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIG-GVQRP-GIVHRLDK 157
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPI 322
T G +V+A+T+ +++EK ++LY + T LPVG + +
Sbjct: 158 DTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKM 217
Query: 323 NIAP-----RLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 377
I P R W L + I + W + +L
Sbjct: 218 GIVPVEKGGREAVTHWRLLE--------------------RIGNHSW--------LEFQL 249
Query: 378 LTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPG 414
TGRTHQ+R G P+VGD++Y ++ PG
Sbjct: 250 ETGRTHQIRVHSKQMGHPLVGDNLYTSPGSVNVNLPG 286
>sp|P44782|RLUA_HAEIN Ribosomal large subunit pseudouridine synthase A OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluA PE=3 SV=1
Length = 219
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 221 IAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I ++H+ V++KP+G SV G +S + G P H++D T G +V
Sbjct: 16 IIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEP---AHRLDMATSGIIV 72
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
A ++ R+ RE++ KK Y A+ G + + +N+ +C
Sbjct: 73 FALSKAADRELKRQFREREPKKHYQAIVW-----GHLENDYGEVNLP--------MICDW 119
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLAACGAPI 396
E +++ D +GK ++ +R ++KL +TGR+HQ+R + A G PI
Sbjct: 120 ENRPRQRL---DFVLGKR-AVTKFEVLARLPNNSTRVKLTPVTGRSHQLRLHMLALGHPI 175
Query: 397 VGDSMY 402
+GD Y
Sbjct: 176 LGDKFY 181
>sp|O25441|Y745_HELPY Uncharacterized RNA pseudouridine synthase HP_0745 OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=HP_0745 PE=3 SV=1
Length = 327
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 25/215 (11%)
Query: 197 TYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCA------ 250
T L + PK P ++D +I E +VL+KP V E +
Sbjct: 59 TLLTPKITPK--PLKKELDLEIEVIFEDEDLLVLNKPPNLVVHKALSVKEPTLVDWLEFK 116
Query: 251 TFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ LGL H++D T G +V+A+ +++ K + + Y+AL + PL
Sbjct: 117 NYELSNLGLKERYGIVHRLDKDTSGGIVIAKNNFTHVHLSEQLKTKMMGRYYIALLSTPL 176
Query: 311 PVGIMT---HYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSR 367
M+ + R N +L+++ K V + K+ I S+
Sbjct: 177 KEEKMSVECYLTRNPN------------NRLKMIALKAVKKEKSRYSKSEFI--SLLTSQ 222
Query: 368 DYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ KL TGRTHQ+RA L I+GD++Y
Sbjct: 223 NNLNLIGAKLFTGRTHQIRAHLEYLNRHIIGDNLY 257
>sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=ZMO0505 PE=3 SV=2
Length = 219
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ + +++DKPAG V D AS G H++D T GC++
Sbjct: 7 RVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLDRDTSGCLL 66
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP---VGIMTHYMRPINIAPRLVSEGWYL 335
LAR + + +VKK Y A+ +P GI+ + I+ +P+ GW +
Sbjct: 67 LARNPKMHRRLSEAFSQGQVKKCYWAILEG-VPEKNEGIIDLPLLKIS-SPK---SGWRI 121
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLA-ACGA 394
+ + W K S+ A+ + TGRTHQ+R A G
Sbjct: 122 VADDKGKRAVTHWEILAKNKGRSL---------VAFRPE----TGRTHQLRVHAATGLGL 168
Query: 395 PIVGDSMY 402
PIVGD Y
Sbjct: 169 PIVGDPFY 176
>sp|P0AA38|RLUA_SHIFL Ribosomal large subunit pseudouridine synthase A OS=Shigella
flexneri GN=rluA PE=3 SV=2
Length = 219
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A T+ R+ RE++ KK Y+A P P +EG L
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
L ++ C WP+ K + G P++ D +K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLR 165
Query: 387 AQLAACGAPIVGDSMY 402
+ A G PI+GD Y
Sbjct: 166 VHMLALGHPILGDRFY 181
>sp|P0AA37|RLUA_ECOLI Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli (strain K12) GN=rluA PE=1 SV=2
Length = 219
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A T+ R+ RE++ KK Y+A P P +EG L
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
L ++ C WP+ K + G P++ D +K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLR 165
Query: 387 AQLAACGAPIVGDSMY 402
+ A G PI+GD Y
Sbjct: 166 VHMLALGHPILGDRFY 181
>sp|Q8ZIK1|RLUA_YERPE Ribosomal large subunit pseudouridine synthase A OS=Yersinia pestis
GN=rluA PE=3 SV=1
Length = 206
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
I+ + H+ V++KP+G SV G ++S T R + H++D T G +
Sbjct: 2 IVLYQDKHIMVVNKPSGLLSVPGRAPENKDSVMT---RVQNDFPTAESVHRLDMATSGVI 58
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQ 337
V+A T+ R+ RE++ KK Y+A L ++ L
Sbjct: 59 VVALTKAAERELKRQFREREPKKTYIARVWGHL-------------------AQDEGLID 99
Query: 338 LEVMECKKVPWPDA-------TVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQ 388
L ++ C WP+ GK+ E SRD ++KL +TGR+HQ+R
Sbjct: 100 LPLI-CD---WPNRPKQKVCYETGKSAQTE-YQVISRDDDGSTRVKLSPITGRSHQLRVH 154
Query: 389 LAACGAPIVGDSMYM-PAAIAQLSSPGLNPFGKC 421
+ A G PI+GD Y P A A S L+ C
Sbjct: 155 MLAMGHPILGDGFYAHPEAKAMASRLQLHAQQLC 188
>sp|Q28C59|RUSD4_XENTR RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus
tropicalis GN=rpusd4 PE=2 SV=1
Length = 324
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 35/214 (16%)
Query: 211 CYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATF----ASRALG-LTTPLR 264
Y + S+++ V+++KP G V GG T +E S A+ A G PL+
Sbjct: 42 VYLRELKSQVVREDPELVLVNKPHGLPVHGGPT--VERSVASLLPALAKHHFGWKAEPLK 99
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL---TTAP------LPV--- 312
H++D T G ++LART E + +RE++V ++Y AL T +P +P+
Sbjct: 100 LCHRLDRDTTGALILARTTEAAERVQQALREREVHRVYWALCLGTPSPREGILDIPIMEK 159
Query: 313 ---GIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDY 369
G HY ++ R+ EG +E +VP Y
Sbjct: 160 ETSGPQKHYKMALSPRFRVSEEG-------AVERVRVPRSAHEAVTRYRTLGAA----SG 208
Query: 370 AYECKIKLLTGRTHQVRAQLA-ACGAPIVGDSMY 402
A ++ +TG HQ+R LA PI+GD Y
Sbjct: 209 ASLVELHPITGVKHQLRVHLALGLNCPILGDHKY 242
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 27/189 (14%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYL 335
+++A+ + H ++REK ++K YLAL G Y++ + AP L +
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVR-----GQWQSYVKSVQ-APLL--KNILQ 201
Query: 336 CQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRTHQVRAQLAACG 393
++ + P T + +E+ YA+ ++ +TGRTHQ+R G
Sbjct: 202 SGERIVRVSQEGKPSET---RFKVEE------RYAFATLVRCSPVTGRTHQIRVHTQYAG 252
Query: 394 APIVGDSMY 402
PI D Y
Sbjct: 253 HPIAFDDRY 261
>sp|Q8Z9J5|RLUA_SALTI Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhi GN=rluA PE=3 SV=3
Length = 219
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A T+ R+ RE++ KK Y+A P P +EG L
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
L ++ C WP+ K + G P++ D +K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPKQKV--CYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLR 165
Query: 387 AQLAACGAPIVGDSMY 402
+ A G PI+GD Y
Sbjct: 166 VHMLALGHPILGDQFY 181
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 39/201 (19%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEY 285
++L+KP+G +V GG+ N A RAL L H++D T G +++A+ +
Sbjct: 108 IILNKPSGIAVHGGSGLNF---GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSA 164
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKK 345
H ++R K V+K YLAL G + ++V++
Sbjct: 165 LRNLHEQLRVKTVQKDYLALV------------------------RGQWQSHIKVIQASL 200
Query: 346 VPWPDATVGKAYSIEDCGWPSRD-YAYE--------CKIKLLTGRTHQVRAQLAACGAPI 396
+ ++ + + + G PS ++ E K +TGRTHQ+R G PI
Sbjct: 201 LKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRTHQIRVHTQYAGHPI 260
Query: 397 VGDSMYMPAAI-AQLSSPGLN 416
D Y Q++ GLN
Sbjct: 261 ALDDKYGDKDFDKQMNELGLN 281
>sp|Q8ZRV9|RLUA_SALTY Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluA PE=3 SV=3
Length = 219
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A T+ R+ RE++ KK Y+A P P +EG L
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
L ++ C WP+ K + G P++ D +K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPKQKV--CYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLR 165
Query: 387 AQLAACGAPIVGDSMY 402
+ A G PI+GD Y
Sbjct: 166 VHMLALGHPILGDRFY 181
>sp|Q8FL93|RLUA_ECOL6 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluA
PE=3 SV=3
Length = 219
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
++ + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VVLYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A T+ R+ RE++ KK Y+A P P +EG L
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
L ++ C WP+ K + G P++ D +K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLR 165
Query: 387 AQLAACGAPIVGDSMY 402
+ A G PI+GD Y
Sbjct: 166 VHMLALGHPILGDRFY 181
>sp|Q8IZ73|RUSD2_HUMAN RNA pseudouridylate synthase domain-containing protein 2 OS=Homo
sapiens GN=RPUSD2 PE=1 SV=2
Length = 545
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 25/223 (11%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNI 245
+ ++ +++ +LR VH P + R++A E VV+DKP+ V
Sbjct: 194 VQDLNIVLKDNDFLRNTVHRHEPPVTAE---PIRLLAENEDVVVVDKPSSIPVH-PCGRF 249
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+ F L H++D T G ++ A+T H ++R+++++K Y+
Sbjct: 250 RHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCR 309
Query: 306 TTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPW--PDATVGKAYSIEDCG 363
P +T E + +V C+ P P TV + S
Sbjct: 310 VEGEFPTEEVT------------CKEPILVVSYKVGVCRVDPRGKPCETVFQRLS----- 352
Query: 364 WPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAA 406
+ + C+ LTGRTHQ+R L G PI+ D +Y A
Sbjct: 353 YNGQSSVVRCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSVA 393
>sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana
GN=At3g19440 PE=2 SV=1
Length = 477
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 228 VVLDKPAGTSVGG------TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
+VL+KP G +V G + D + SC F + R H++D G +VLAR
Sbjct: 193 IVLNKPHGLAVQGGSGIKTSIDELAASCLKFDK-----SESPRLVHRLDRDCSGLLVLAR 247
Query: 282 TQEYCSIFHRKIRE--------------KKVKKLYLALTTA--PLPVGIMTHYMRPINIA 325
TQ ++ H RE K +K+ Y+AL P G ++ +R +
Sbjct: 248 TQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKV--- 304
Query: 326 PRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYE-CKIKLLTGRTHQ 384
+V +G ++ V + ++ + + IE S + Y +++ LTGR HQ
Sbjct: 305 --VVDDGKS-ERITVNDNGELVSTQHAITEYRVIE-----SSPHGYTWLELRPLTGRKHQ 356
Query: 385 VRAQLA-ACGAPIVGDSMY 402
+R A G PIVGD Y
Sbjct: 357 LRVHCAEVLGTPIVGDYKY 375
>sp|Q12069|PUS9_YEAST tRNA pseudouridine(32) synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PUS9 PE=1
SV=1
Length = 462
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++I ++ +V+DKP+G V T + LG + +++D T G +
Sbjct: 189 KVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFV--VNPCNRLDRLTSGLMF 246
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN-IAPRLVSEGWYLCQ 337
LA+T + +++ ++V K Y+A P + +P+ I PRL +CQ
Sbjct: 247 LAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVI-VEKPLKLIEPRLALNA--VCQ 303
Query: 338 LEVMECK--KVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAP 395
++ K K + + SI C K LTGR+HQ+R L G P
Sbjct: 304 MDEKGAKHAKTVFNRISYDGKTSIVKC-------------KPLTGRSHQIRVHLQYLGHP 350
Query: 396 IVGDSMY 402
I D +Y
Sbjct: 351 IANDPIY 357
>sp|P72970|Y1592_SYNY3 Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1592 PE=3 SV=1
Length = 291
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 50/195 (25%)
Query: 230 LDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQEYC 286
+DKP+G V D + + L + P L H++ T G ++L R+
Sbjct: 73 IDKPSGLPVLPGGDFVYHTVL----EQLKIQYPQESLFPLHRLGTGTSGLLLLGRSTLGR 128
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL-EVMECK- 344
R+ RE +K+Y + I P C L E EC
Sbjct: 129 RELSRQFREHICRKIYRTV------------------IGP---------CDLPEKFECHQ 161
Query: 345 ---KVPWPDATVGKAYSIEDCGWPSRDYAY---------ECKIKLLTGRTHQVRAQLAAC 392
K+P+P +G Y+ G P++ Y ++++ TGR HQ+R LA+
Sbjct: 162 AIGKIPYPQ--LGYIYAASSHGKPAQSYGRILARSPEKTWLEVEIRTGRPHQIRIHLASL 219
Query: 393 GAPIVGDSMYMPAAI 407
G P++GD +Y P +
Sbjct: 220 GYPLLGDRLYGPGGV 234
>sp|Q09709|YA32_SCHPO Uncharacterized protein C18B11.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC18B11.02c PE=3 SV=1
Length = 394
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 121/319 (37%), Gaps = 39/319 (12%)
Query: 155 RVFKEVTDPSVLSKRSSIKGKTVREAQKTF--RITHVDQIVEAGTYLRVHVHPKRFPRCY 212
+ EV + + S K +R Q +I +VD ++E G + H H P
Sbjct: 43 KTLLEVFNTEFRDRESGYYEKAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVS- 101
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
D I+ ES+VV+DKPAG V T + + + L +++D
Sbjct: 102 --DQPVGIVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKE-NKCSLLYPCNRLDRL 158
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSE 331
T G + +++ + + K +KK Y+A P G + + +AP L
Sbjct: 159 TSGLMFFSKSPKAAEEMRVHMISKSLKKEYVARVIGEFPNSGEVICDAPLLTVAPTL--- 215
Query: 332 GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAA 391
G + E V A G S+ C K LTGRTHQ+R L
Sbjct: 216 GLNRIHPDGKEASTVFKRIAFDGHT-SLVLC-------------KPLTGRTHQLRVHLQY 261
Query: 392 CGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIG 451
G PI D +Y A ++ P L G+ E +VI +S+ G + +
Sbjct: 262 LGYPIANDPIY---ANKRVWGPSLGKNGEGSNE---------SVIMRLSEIGKTETASPL 309
Query: 452 LQACHISWDDGECCYEARS 470
LQ W E EA++
Sbjct: 310 LQ---YEWYTNETEAEAKA 325
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++REK ++K YLAL APL I+ R + +
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV 209
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRT 382
+ EG P T + +E+ YA+ ++ +TGRT
Sbjct: 210 S----QEG---------------KPSET---RFKVEE------RYAFATLVRCSPVTGRT 241
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R G PI D Y
Sbjct: 242 HQIRVHTQYAGHPIAFDDRY 261
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++REK ++K YLAL APL I+ R + +
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV 209
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRT 382
+ EG P T + +E+ YA+ ++ +TGRT
Sbjct: 210 S----QEG---------------KPSET---RFKVEE------RYAFATLVRCSPVTGRT 241
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R G PI D Y
Sbjct: 242 HQIRVHTQYAGHPIAFDDRY 261
>sp|Q8ZFU1|RLUC_YERPE Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis
GN=rluC PE=3 SV=1
Length = 320
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 44/189 (23%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+GT+V G + + E A L H++D T G +++A+ +
Sbjct: 103 LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGVLLVAKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALT-----------TAPLPVGIMTHYMRPINIAPRLVSEGW 333
H ++R K ++K YLAL APL IM R + ++ SEG
Sbjct: 159 ALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVS----SEG- 213
Query: 334 YLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACG 393
P T + IE+ ++A K +TGRTHQ+R G
Sbjct: 214 --------------KPSET---RFKIEE----RFEHATLVKASPVTGRTHQIRVHALHAG 252
Query: 394 APIVGDSMY 402
PI D Y
Sbjct: 253 HPIAFDDRY 261
>sp|Q8ZQ16|RLUC_SALTY Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluC PE=3 SV=1
Length = 319
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 49/211 (23%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + + +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G +++A+ + H ++REK ++K YLAL APL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKN 198
Query: 314 IMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYEC 373
I+ R + R+ EG P T + +E+ YA+
Sbjct: 199 ILQSGERIV----RVSQEG---------------KPSET---RFKVEE------RYAFAT 230
Query: 374 KIKL--LTGRTHQVRAQLAACGAPIVGDSMY 402
++ +TGRTHQ+R G PI D Y
Sbjct: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY 261
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++REK ++K YLAL APL I+ R + +
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV 209
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRT 382
+ EG P T + +E+ YA+ ++ +TGRT
Sbjct: 210 S----QEG---------------KPSET---RFKVEE------RYAFATLVRCSPVTGRT 241
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R G PI D Y
Sbjct: 242 HQIRVHTQYAGHPIAFDDRY 261
>sp|Q8Z7J7|RLUC_SALTI Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhi GN=rluC PE=3 SV=1
Length = 319
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++REK ++K YLAL APL I+ R + +
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRV 209
Query: 325 APRLVSEGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL--LTGRT 382
+ EG P T + +E+ YA+ ++ +TGRT
Sbjct: 210 S----QEG---------------KPSET---RFKVEE------RYAFATLVRCSPVTGRT 241
Query: 383 HQVRAQLAACGAPIVGDSMY 402
HQ+R G PI D Y
Sbjct: 242 HQIRVHTQYAGHPIAFDDRY 261
>sp|Q8VCZ8|RUSD1_MOUSE RNA pseudouridylate synthase domain-containing protein 1 OS=Mus
musculus GN=Rpusd1 PE=2 SV=1
Length = 306
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
R HQ+D T G + +A + ++ +E++V K YLAL + +T I
Sbjct: 60 FRFCHQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVT-----I 114
Query: 323 NIA-PRLVSEG--WYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLT 379
N A R +EG +C C+ P ++ + +E G + D + +K LT
Sbjct: 115 NYAIGRNSTEGRTHTMCIEGTHGCEN---PKPSLTELLVLEH-GLYAGDPVSKVLLKPLT 170
Query: 380 GRTHQVRAQLAACGAPIVGDSMY 402
GRTHQ+R +A G PIVGD Y
Sbjct: 171 GRTHQLRVHCSALGHPIVGDLTY 193
>sp|Q82WZ5|RLUD_NITEU Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3
SV=1
Length = 344
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-FASRALGLTTPLRT--THQIDNCTEG 275
+I+ + +++DKPAG V N + + A L+ R H++D T G
Sbjct: 110 KILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLDKDTTG 169
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV-GIMTHYMRPINIAPRLVSEGWY 334
+V+A+T E R+++++ VK+ YLAL L G++ PI P +
Sbjct: 170 LLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVD---APIGRHP------IH 220
Query: 335 LCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGA 394
++ V++ K V + ++ C ++ TGRTHQ+R L + G
Sbjct: 221 RTRMAVVQNGKPARTHYRVLEKFTASTL--------LHCSLE--TGRTHQIRVHLLSIGH 270
Query: 395 PIVGDSMY 402
P+ GD +Y
Sbjct: 271 PLAGDPVY 278
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 35/221 (15%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
HV+ E + V V P FP +D I+ E +V++KP G T+ N E
Sbjct: 58 HVNWSEELFEKVPVEVQPYDFP----LD----ILYEDEQIMVVNKPNGLISHPTSFNESE 109
Query: 248 S---CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
S A F P+ H++D T G ++LA+ Q ++++++ +K+ YLA
Sbjct: 110 SLLGAALFHCNH----QPVFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLA 165
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQLEVMECKKVPWP---DATVGKAYSIED 361
L PL G LE + KV W + K +
Sbjct: 166 LVHFPLDS-----------------LSGTISAPLERVGNNKVMWKVGNSSNKAKNAFTKF 208
Query: 362 CGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMY 402
+ A K +LLTGRTHQ+R L P+ D +Y
Sbjct: 209 TVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPVYNDPLY 249
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 49/198 (24%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG-LTTPLRTTHQIDNCTEGCVV 278
II + ++L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 153
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGWYLCQL 338
+A+ + + REK VKK Y AL +G + +N AP L +E
Sbjct: 154 VAKKRSALRHLQAQFREKTVKKFYFALV-----MGQWKSSCKVVN-APLLKNE------- 200
Query: 339 EVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL--------------TGRTHQ 384
V + G PS E + K+L TGRTHQ
Sbjct: 201 --------------VNSIVRVNPNGKPS-----ETRFKILEKFEQATLIQASPITGRTHQ 241
Query: 385 VRAQLAACGAPIVGDSMY 402
+R G PI D Y
Sbjct: 242 IRVHTQYTGHPIAWDDRY 259
>sp|Q8XA10|RLUA_ECO57 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O157:H7 GN=rluA PE=3 SV=3
Length = 219
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G + ++S T R + H++D T G +
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIMTHYMRPINIAPRLVSEGWYLC 336
V+A T+ R+ RE+ KK Y+ P P +EG L
Sbjct: 72 VVALTKAAERELKRQFRERVPKKQYVTRVWGHPSP------------------AEG--LV 111
Query: 337 QLEVMECKKVPWPDATVGKAYSIEDCGWPSR----------DYAYECKIKLLTGRTHQVR 386
L ++ C WP+ K + G P++ D +K +TGR+HQ+R
Sbjct: 112 DLPLI-CD---WPNRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLR 165
Query: 387 AQLAACGAPIVGDSMY 402
+ A G PI+GD Y
Sbjct: 166 VHMLALGHPILGDRFY 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,470,285
Number of Sequences: 539616
Number of extensions: 8009995
Number of successful extensions: 16244
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 16035
Number of HSP's gapped (non-prelim): 201
length of query: 483
length of database: 191,569,459
effective HSP length: 121
effective length of query: 362
effective length of database: 126,275,923
effective search space: 45711884126
effective search space used: 45711884126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)