BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011531
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 272/484 (56%), Gaps = 26/484 (5%)
Query: 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQ 67
PHVV++PYP+QGHI P+ LA+LL F +TFVNT++NH LL++ +F + F +F
Sbjct: 9 PHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF-DGFTDFN 67
Query: 68 FRSIPSGLPANVIRSGLTAKDVFDAMKAVSK---PAFRDLLISLREETEQRQSPTCVIAD 124
F SIP GL + G ++DV ++V K + +LL L T TC+++D
Sbjct: 68 FESIPDGLTP-MEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHST-NVPPVTCLVSD 125
Query: 125 GILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVEDGHIPFPDEN------MEKP 178
+ F T+ +EE ++P + + +A VE G IPF DE+ +E
Sbjct: 126 CCMSF-TIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETK 184
Query: 179 VAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVV 237
V IPG +NF R +D+ R T+ +D +L+FFI + + + ++LNTF E+E+ V+
Sbjct: 185 VDWIPGLKNF-RLKDIVDFIRT-TNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVI 242
Query: 238 SLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYV 297
+ L S IY IGPL L K + S+ S+ L EDT C+ WL S+ P SV+YV
Sbjct: 243 NALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSN--LWKEDTECLDWLESKEPGSVVYV 300
Query: 298 SFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEE--RNR 355
+FGS +T EQ+ E GL N + FL ++RPDL++G G+ + +E T E
Sbjct: 301 NFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSV---IFSSEFTNEIADRG 355
Query: 356 FIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWK 415
I SW PQ++VL HP++GGFLTH GWNST E I AGVPM+CWP F+DQ + R + W+
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 416 IGFDMKDTCDGSIIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIE 474
IG ++ + KL+ +++ +K +++ + A + GG SY NL+ +I+
Sbjct: 416 IGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIK 475
Query: 475 DIRL 478
D+ L
Sbjct: 476 DVLL 479
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 148/508 (29%), Positives = 230/508 (45%), Gaps = 87/508 (17%)
Query: 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAE-LLGSANFQVTFVNTDHNHDLLLRNTDITSF 59
ME S PHV ++P P GH+ P++ A+ L+ VTFV
Sbjct: 1 MEESK-TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP------------ 47
Query: 60 CNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAV------------SKPAFRDLLIS 107
P+ R++ LP+++ L D+ D + S P R + S
Sbjct: 48 ----PSKAQRTVLDSLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDS 103
Query: 108 LREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVEDGH 167
E + PT ++ D + DV+ E +P A+ + LPKL E
Sbjct: 104 F---VEGGRLPTALVVD-LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVS 159
Query: 168 IPFPDENMEKPVAGIPGF-----ENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRA 222
F + +P+ +PG ++FL P R DD Y ++ + T A
Sbjct: 160 CEF--RELTEPLM-LPGCVPVAGKDFLD----PAQDR---KDDAY--KWLLHNTKRYKEA 207
Query: 223 SALILNTF-EIEAPVVSLL---GSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTE 278
+++NTF E+E + L G +Y +GPL + K K QTE
Sbjct: 208 EGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAK-------------QTE 254
Query: 279 DTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPG 338
++ C+ WL++QP SVLYVSFGS LT EQ++EL GL + QRFL V+R +
Sbjct: 255 ESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSS 314
Query: 339 AAET----------PLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGI 388
++ P E T++R I WAPQ +VLAHP+ GGFLTH GWNSTLE +
Sbjct: 315 YFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESV 374
Query: 389 AAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI----IEKLVRDLMENKREEI 444
+G+P+I WP +++Q +N+ +SE + + DG + + ++V+ LME EE
Sbjct: 375 VSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEG--EEG 432
Query: 445 MGSTDRVATMARDA---VNEGGSSYRNL 469
G +++ + A + + G+S + L
Sbjct: 433 KGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/506 (27%), Positives = 229/506 (45%), Gaps = 77/506 (15%)
Query: 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFC 60
M + N ++ +P P GH+ + A+LL NHD +N IT FC
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLL-------------TNHD---KNLYITVFC 46
Query: 61 NRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAM----------KAVSKPAFRDLLISLRE 110
+FP F + I+S L ++ + + + P F L
Sbjct: 47 IKFPGMPFAD-------SYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESL 99
Query: 111 ETEQRQSPTCVIADGIL-------CFLTLDVSEELQIPLLALRTHNASY-SWIYFLLPKL 162
+ + ++++ ++ C +DV E IP T N + S + L +
Sbjct: 100 IPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQ 159
Query: 163 VEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRA 222
+E+ F D + + + IPG N + + LP C K D Y+ + + E F T+
Sbjct: 160 IEE---VFDDSDRDHQLLNIPGISNQVPSNVLPDACFNK--DGGYIAYYKLAERFRDTKG 214
Query: 223 SALILNTF-EIEAPVVSLLGSHFTKI---YTIGPLHELRKSRMKDINSPSVSSSGILQTE 278
+I+NTF ++E + L H KI Y +GPL +L+ ++ Q +
Sbjct: 215 --IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLD----------QAQ 262
Query: 279 DTSCMTWLNSQPPKSVLYVSFGSL-VGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEP 337
+ WL+ QP KSV+++ FGS+ V Q+ E+ GL + G RFL + +
Sbjct: 263 HDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPE 322
Query: 338 GAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397
G E + +G I WAPQ EVLAH A+GGF++H GWNS LE + GVP++ W
Sbjct: 323 GFLEWMELEGKG------MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 398 PQFSDQLVNSRCVSEVWKIGFDMK-------DTCDGSIIEKLVRDLMENKREEIMGSTDR 450
P +++Q +N+ + + W +G ++ D IEK ++DLM+ K +
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD-KDSIVHKKVQE 435
Query: 451 VATMARDAVNEGGSSYRNLDGLIEDI 476
+ M+R+AV +GGSS ++ LI+DI
Sbjct: 436 MKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/506 (27%), Positives = 229/506 (45%), Gaps = 77/506 (15%)
Query: 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFC 60
M + N ++ +P P GH+ + A+LL NHD +N IT FC
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLL-------------TNHD---KNLYITVFC 46
Query: 61 NRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAM----------KAVSKPAFRDLLISLRE 110
+FP F + I+S L ++ + + + P F L
Sbjct: 47 IKFPGMPFAD-------SYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESL 99
Query: 111 ETEQRQSPTCVIADGIL-------CFLTLDVSEELQIPLLALRTHNASY-SWIYFLLPKL 162
+ + ++++ ++ C +DV E IP T N + S + L +
Sbjct: 100 IPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQ 159
Query: 163 VEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRA 222
+E+ F D + + + IPG N + + LP C K D Y+ + + E F T+
Sbjct: 160 IEE---VFDDSDRDHQLLNIPGISNQVPSNVLPDACFNK--DGGYIAYYKLAERFRDTKG 214
Query: 223 SALILNTF-EIEAPVVSLLGSHFTKI---YTIGPLHELRKSRMKDINSPSVSSSGILQTE 278
+I+NTF ++E + L H KI Y +GPL +L+ ++ Q +
Sbjct: 215 --IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLD----------QAQ 262
Query: 279 DTSCMTWLNSQPPKSVLYVSFGSL-VGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEP 337
+ WL+ QP KSV+++ FGS+ V Q+ E+ GL + G RFL + +
Sbjct: 263 HDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPE 322
Query: 338 GAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397
G E + +G I WAPQ EVLAH A+GGF++H GWNS LE + GVP++ W
Sbjct: 323 GFLEWMELEGKG------MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 398 PQFSDQLVNSRCVSEVWKIGFDMK-------DTCDGSIIEKLVRDLMENKREEIMGSTDR 450
P +++Q +N+ + + W +G ++ D IEK ++DLM+ K +
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD-KDSIVHKKVQE 435
Query: 451 VATMARDAVNEGGSSYRNLDGLIEDI 476
+ M+R+AV +GGSS ++ LI+DI
Sbjct: 436 MKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 131/472 (27%), Positives = 222/472 (47%), Gaps = 42/472 (8%)
Query: 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRF-PNFQ 67
HV +L +P H P++SL + + + +VTF N + S N F PN +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFC----TTTTNDTLFSRSNEFLPNIK 70
Query: 68 FRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGIL 127
+ ++ GLP + SG + +F +KA+ + F+ ++ ET ++ TC++ D
Sbjct: 71 YYNVHDGLPKGYVSSGNPREPIFLFIKAMQE-NFKHVIDEAVAET--GKNITCLVTDAFF 127
Query: 128 CFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVEDGHIPFPDENMEKPVAGIPGFEN 187
F D++EE+ + L T +S + + L+ + + + K + +PGF
Sbjct: 128 WF-GADLAEEMHAKWVPLWT-AGPHSLLTHVYTDLIRE-KTGSKEVHDVKSIDVLPGFPE 184
Query: 188 FLRNRDLP-GTCRVKTSDDDYLLQFFIGET-FAMTRASALILNTFEIEAPVV-SLLGSHF 244
L+ DLP G + D D + + + RA+A+ +N+F P++ + L S F
Sbjct: 185 -LKASDLPEGVIK----DIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF 239
Query: 245 TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVG 304
+ +GP ++ +P S ++ C+ WL+ SV+Y+SFGS+V
Sbjct: 240 KLLLNVGPF---------NLTTPQRKVS-----DEHGCLEWLDQHENSSVVYISFGSVVT 285
Query: 305 LTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQE 364
+++ L L G F+ R G+P + P E T+ + + IV+WAPQ
Sbjct: 286 PPPHELTALAESLEECGFPFIWSFR-----GDP-KEKLPKGFLERTKTKGK-IVAWAPQV 338
Query: 365 EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKD-T 423
E+L H +VG FLTH GWNS LE I GVPMI P F DQ +N+ V +IG + +
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV 398
Query: 424 CDGSIIEKLVRDLMENKREEIM-GSTDRVATMARDAVNEGGSSYRNLDGLIE 474
I+K + M +++ IM ++ A AV + G+S + LI+
Sbjct: 399 LTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 224/495 (45%), Gaps = 68/495 (13%)
Query: 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITS 58
M ++ NPHV +L +P H P++++ L +A + +F +T ++ + ++ T
Sbjct: 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTM 60
Query: 59 FCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSP 118
CN + I G+P + +G +D+ + + +FR ++ ET + S
Sbjct: 61 QCN----IKSYDISDGVPEGYVFAGRPQEDI-ELFTRAAPESFRQGMVMAVAETGRPVS- 114
Query: 119 TCVIADGILCFLTLDVSEELQIPLLALRTH--NASYSWIYFLLPKLVEDGHIPFPDENME 176
C++AD + F D++ E+ + L T N+ + +Y DE E
Sbjct: 115 -CLVADAFIWFAA-DMAAEMGVAWLPFWTAGPNSLSTHVYI--------------DEIRE 158
Query: 177 K-PVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFF-IGETFA---------MTRASAL 225
K V+GI G E+ L N +PG +V+ D + F + F+ + +A+A+
Sbjct: 159 KIGVSGIQGREDELLNF-IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAV 217
Query: 226 ILNTFE-IEAPVVSLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMT 284
+N+FE ++ + + L S IGP + I P V + T C+
Sbjct: 218 FINSFEELDDSLTNDLKSKLKTYLNIGPFNL--------ITPPPVVPN------TTGCLQ 263
Query: 285 WLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPL 344
WL + P SV+Y+SFG++ ++ L L F+ +R + P
Sbjct: 264 WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLP------- 316
Query: 345 AQNEGTEERNR---FIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFS 401
EG E+ R +V WAPQ EVLAH AVG F+TH GWNS E +A GVP+IC P F
Sbjct: 317 ---EGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFG 373
Query: 402 DQLVNSRCVSEVWKIGFDMKDTC--DGSIIEKLVRDLMENKREEIMGSTDRVATMARDAV 459
DQ +N R V +V +IG ++ ++ + L + K +++ + + A AV
Sbjct: 374 DQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAV 433
Query: 460 NEGGSSYRNLDGLIE 474
GSS N L++
Sbjct: 434 GPKGSSTENFITLVD 448
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 354 NRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQ---LVNSRCV 410
N + W PQ ++L HP F+THGG N E I G+P + P F+DQ + + +
Sbjct: 69 NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKAR 128
Query: 411 SEVWKIGFDMKDTCD 425
++ F+ + D
Sbjct: 129 GAAVRVDFNTXSSTD 143
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 354 NRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEV 413
N + W PQ ++L F+TH G ST+E ++ VPM+ PQ ++Q +N+ + E+
Sbjct: 306 NVEVHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 277 TEDTSCMTWLNSQ-PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILG 335
E WL+S+ + ++Y++ G+ G T E + GL L+ P L +
Sbjct: 226 AEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVS 285
Query: 336 EPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMI 395
G E P N + SW PQ +L H V + HGG +TL + AGVP +
Sbjct: 286 --GLGEVPA---------NVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQL 332
Query: 396 CWPQFSDQL 404
+P D
Sbjct: 333 SFPWAGDSF 341
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 354 NRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNS 407
N + W PQ +L + F+TH G + EG+A PMI PQ DQ N+
Sbjct: 284 NVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 360 WAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNS 407
W P VLAH LTHG + LE AAGVP++ P F+ + S
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS 333
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 349 GTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVN-S 407
GT RN V W P +L + HGG + + I AG+P + P DQ + +
Sbjct: 279 GTLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTA 336
Query: 408 RCVSEVWKIGF-DMKDTCDGSIIEKLVRD 435
R IG D D ++ +L+ D
Sbjct: 337 REAVSRRGIGLVSTSDKVDADLLRRLIGD 365
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 354 NRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEV 413
N +V W P +L + HGG + L +AAGVP P S Q N R V
Sbjct: 289 NVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTG 345
Query: 414 WKIGFDMKDTCDGSIIEKLVRDLMENK 440
IGFD + GS+ + R L+++
Sbjct: 346 LGIGFDAE---AGSLGAEQCRRLLDDA 369
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 354 NRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEV 413
N +V W P +L + HGG + L +AAGVP P S Q N R V
Sbjct: 289 NVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTG 345
Query: 414 WKIGFDMKDTCDGSIIEKLVRDLMENK 440
IGFD + GS+ + R L+++
Sbjct: 346 LGIGFDAE---AGSLGAEQCRRLLDDA 369
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 349 GTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVN-S 407
GT RN V W P +L + HGG + I AG+P + P DQ + +
Sbjct: 279 GTLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTA 336
Query: 408 RCVSEVWKIGF-DMKDTCDGSIIEKLVRD 435
R IG D D ++ +L+ D
Sbjct: 337 REAVSRRGIGLVSTSDKVDADLLRRLIGD 365
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 285 WLNSQPPKSVLYVSFGSLVGL-TREQMSELWHGLVNRGQRF---LLVVRPDLILGEPGAA 340
W+ ++ + + V+ GS V + ++ + GL R+ L+V PD + E A
Sbjct: 203 WMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTV-AEALRA 261
Query: 341 ETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQF 400
E P A+ V W P + V P + H G STL G++AGVP + P+
Sbjct: 262 EVPQAR-----------VGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIPKG 308
Query: 401 SDQLVNSRCVSE 412
S +R V++
Sbjct: 309 SVLEAPARRVAD 320
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 284 TWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVR-PDLILGEPGAAET 342
+L++ PP +Y+ FGSL G + + + G+R +L DL+L + GA
Sbjct: 232 AFLDAGPPP--VYLGFGSL-GAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGA--- 285
Query: 343 PLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSD 402
+ F + + + V + HGG +T AG P I PQ +D
Sbjct: 286 -----------DCFAIGEVNHQVLFGR--VAAVIHHGGAGTTHVAARAGAPQILLPQMAD 332
Query: 403 QLVNSRCVSEV 413
Q + V+E+
Sbjct: 333 QPYYAGRVAEL 343
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 360 WAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEV 413
W P +VL V +THGG + E + G P++ PQ D +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 360 WAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEV 413
W P +VL V +THGG + E + G P++ PQ D +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,457,826
Number of Sequences: 62578
Number of extensions: 608786
Number of successful extensions: 1241
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 25
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)