Query 011531
Match_columns 483
No_of_seqs 128 out of 1300
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 9.9E-66 2.1E-70 513.2 45.9 446 1-478 1-450 (451)
2 PLN02555 limonoid glucosyltran 100.0 1.6E-65 3.4E-70 513.4 46.9 462 1-482 1-473 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 1.4E-64 2.9E-69 506.6 45.4 437 5-477 4-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 4.9E-64 1.1E-68 498.6 43.5 437 4-478 2-448 (449)
5 PLN02207 UDP-glycosyltransfera 100.0 4.8E-63 1E-67 493.2 45.3 448 6-479 2-466 (468)
6 PLN02210 UDP-glucosyl transfer 100.0 3.9E-63 8.4E-68 496.5 44.7 439 3-478 4-455 (456)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.1E-63 1.7E-67 495.6 44.3 455 3-480 5-473 (477)
8 PLN02448 UDP-glycosyltransfera 100.0 6.1E-62 1.3E-66 491.2 44.6 438 3-478 6-457 (459)
9 PLN02152 indole-3-acetate beta 100.0 7.5E-62 1.6E-66 483.7 44.2 437 7-476 3-454 (455)
10 PLN02992 coniferyl-alcohol glu 100.0 5.2E-62 1.1E-66 486.7 42.9 433 7-479 5-470 (481)
11 PLN02554 UDP-glycosyltransfera 100.0 1.1E-61 2.4E-66 491.0 42.4 446 7-479 2-479 (481)
12 PLN00164 glucosyltransferase; 100.0 1.9E-61 4.1E-66 487.4 43.7 443 6-480 2-475 (480)
13 PLN02534 UDP-glycosyltransfera 100.0 2.4E-61 5.1E-66 483.9 43.6 451 4-479 5-487 (491)
14 PLN02670 transferase, transfer 100.0 4.4E-61 9.6E-66 479.6 42.7 446 5-480 4-467 (472)
15 PLN03004 UDP-glycosyltransfera 100.0 6.4E-61 1.4E-65 476.5 40.3 434 6-467 2-450 (451)
16 PLN03015 UDP-glucosyl transfer 100.0 2.2E-60 4.8E-65 472.1 43.8 440 6-477 2-467 (470)
17 PLN03007 UDP-glucosyltransfera 100.0 1.9E-60 4.1E-65 482.7 44.0 451 5-479 3-481 (482)
18 PLN02167 UDP-glycosyltransfera 100.0 1.5E-60 3.3E-65 482.0 41.3 453 5-480 1-474 (475)
19 PLN02764 glycosyltransferase f 100.0 1.3E-59 2.9E-64 465.2 44.0 427 5-482 3-449 (453)
20 PLN02208 glycosyltransferase f 100.0 2E-59 4.3E-64 466.7 40.9 417 5-478 2-439 (442)
21 PLN00414 glycosyltransferase f 100.0 7.1E-58 1.5E-62 456.1 40.9 418 6-481 3-443 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.9E-52 4.1E-57 424.8 27.6 416 6-476 19-464 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.3E-53 4.9E-58 439.0 2.6 401 9-478 2-440 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 9.7E-42 2.1E-46 341.4 33.4 375 13-476 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.2E-41 2.5E-46 342.4 26.6 379 8-475 1-400 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.4E-41 3.1E-46 351.1 20.3 410 7-457 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 6.1E-40 1.3E-44 324.7 24.0 389 7-479 1-401 (406)
28 PRK12446 undecaprenyldiphospho 99.9 7.4E-24 1.6E-28 207.4 26.1 318 9-450 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 3.1E-23 6.7E-28 202.0 26.4 307 8-436 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.6E-21 5.6E-26 187.1 29.1 337 8-478 1-353 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 8.4E-21 1.8E-25 184.5 25.5 123 291-439 187-314 (321)
32 PRK00726 murG undecaprenyldiph 99.8 1.3E-16 2.9E-21 157.9 27.5 91 355-450 237-333 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 1.3E-15 2.8E-20 150.4 24.5 324 9-457 1-337 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.3E-13 2.7E-18 136.1 29.7 89 362-458 243-335 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.6 2.1E-14 4.5E-19 142.7 20.9 168 290-473 189-383 (385)
36 PRK13609 diacylglycerol glucos 99.6 1.9E-13 4.2E-18 136.5 23.9 146 290-457 200-351 (380)
37 COG4671 Predicted glycosyl tra 99.6 1.2E-12 2.6E-17 121.1 21.9 333 6-438 8-364 (400)
38 TIGR03590 PseG pseudaminic aci 99.5 9.1E-13 2E-17 125.0 20.8 103 293-409 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.5 2.1E-12 4.5E-17 129.1 22.6 78 363-446 255-346 (380)
40 PRK13608 diacylglycerol glucos 99.5 5.6E-11 1.2E-15 118.9 27.4 166 290-478 200-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 6.9E-15 1.5E-19 128.9 -1.6 135 294-439 1-144 (167)
42 TIGR03492 conserved hypothetic 99.4 1.6E-10 3.5E-15 115.1 26.7 329 16-446 5-369 (396)
43 PLN02605 monogalactosyldiacylg 99.4 2.4E-10 5.3E-15 114.0 25.9 150 290-458 204-362 (382)
44 PF03033 Glyco_transf_28: Glyc 99.3 6.4E-13 1.4E-17 112.7 4.0 126 10-150 1-132 (139)
45 cd03814 GT1_like_2 This family 99.1 2.2E-07 4.9E-12 91.4 31.9 78 354-439 248-332 (364)
46 COG3980 spsG Spore coat polysa 99.1 9.7E-09 2.1E-13 92.7 18.3 148 292-455 158-307 (318)
47 PLN02871 UDP-sulfoquinovose:DA 99.1 5.8E-07 1.2E-11 92.3 33.3 125 295-439 265-400 (465)
48 cd03823 GT1_ExpE7_like This fa 99.1 3.5E-07 7.5E-12 89.8 30.7 78 354-439 244-329 (359)
49 cd03800 GT1_Sucrose_synthase T 99.0 3E-07 6.5E-12 92.1 28.6 78 354-439 284-368 (398)
50 PRK10307 putative glycosyl tra 99.0 2.6E-06 5.7E-11 86.0 34.0 115 354-479 285-408 (412)
51 cd03818 GT1_ExpC_like This fam 99.0 4E-06 8.7E-11 84.2 34.4 80 354-439 282-366 (396)
52 cd03808 GT1_cap1E_like This fa 99.0 1.6E-06 3.4E-11 84.8 30.9 78 354-439 247-329 (359)
53 cd04962 GT1_like_5 This family 99.0 1.3E-06 2.8E-11 86.8 29.0 78 354-439 254-336 (371)
54 cd03794 GT1_wbuB_like This fam 98.9 1.2E-06 2.5E-11 86.9 27.4 78 354-439 276-365 (394)
55 cd03817 GT1_UGDG_like This fam 98.9 2.3E-06 5.1E-11 84.3 28.9 77 354-439 260-343 (374)
56 TIGR00236 wecB UDP-N-acetylglu 98.9 4.6E-07 9.9E-12 90.0 23.5 83 354-448 256-341 (365)
57 cd03801 GT1_YqgM_like This fam 98.9 5.6E-06 1.2E-10 81.0 29.8 78 354-439 257-341 (374)
58 cd03798 GT1_wlbH_like This fam 98.8 7.2E-06 1.6E-10 80.6 29.2 78 354-439 260-344 (377)
59 cd03816 GT1_ALG1_like This fam 98.8 8.7E-06 1.9E-10 82.3 29.8 75 355-439 296-381 (415)
60 cd03795 GT1_like_4 This family 98.8 3.8E-06 8.1E-11 82.7 26.7 128 294-439 192-332 (357)
61 PRK05749 3-deoxy-D-manno-octul 98.8 3.3E-06 7.2E-11 85.6 26.6 80 355-439 304-388 (425)
62 PF04007 DUF354: Protein of un 98.8 6.7E-06 1.4E-10 79.3 26.4 111 8-148 1-112 (335)
63 cd03825 GT1_wcfI_like This fam 98.7 1.9E-05 4.2E-10 77.9 28.8 80 351-439 243-330 (365)
64 TIGR03449 mycothiol_MshA UDP-N 98.7 2.8E-05 6.1E-10 78.3 30.2 78 354-439 284-368 (405)
65 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 1.3E-06 2.7E-11 86.7 19.9 131 291-439 197-337 (363)
66 cd03821 GT1_Bme6_like This fam 98.7 4.5E-05 9.7E-10 75.0 30.3 76 354-439 263-345 (375)
67 TIGR02472 sucr_P_syn_N sucrose 98.7 3.8E-05 8.3E-10 78.2 29.6 82 351-439 316-406 (439)
68 cd03820 GT1_amsD_like This fam 98.7 4.3E-05 9.4E-10 74.2 28.4 85 355-449 237-327 (348)
69 cd03796 GT1_PIG-A_like This fa 98.7 5.6E-05 1.2E-09 76.0 29.8 76 354-439 251-333 (398)
70 PRK14089 ipid-A-disaccharide s 98.6 3E-05 6.5E-10 75.4 25.1 145 293-455 168-332 (347)
71 cd03819 GT1_WavL_like This fam 98.6 8.6E-05 1.9E-09 73.1 29.2 79 354-438 247-329 (355)
72 cd03805 GT1_ALG2_like This fam 98.6 8.8E-05 1.9E-09 74.2 29.2 77 354-439 281-364 (392)
73 cd05844 GT1_like_7 Glycosyltra 98.6 6.5E-05 1.4E-09 74.4 26.6 80 351-439 244-336 (367)
74 cd03807 GT1_WbnK_like This fam 98.5 0.0003 6.5E-09 68.8 31.0 75 355-439 253-332 (365)
75 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00047 1E-08 75.2 33.8 82 351-439 547-637 (1050)
76 cd03822 GT1_ecORF704_like This 98.5 0.00018 3.8E-09 70.8 28.3 77 354-439 248-334 (366)
77 cd03799 GT1_amsK_like This is 98.5 0.00017 3.7E-09 70.8 28.0 78 354-439 237-327 (355)
78 cd03802 GT1_AviGT4_like This f 98.5 5.9E-05 1.3E-09 73.6 24.2 128 295-439 173-308 (335)
79 PRK09922 UDP-D-galactose:(gluc 98.4 7.5E-05 1.6E-09 73.9 23.0 78 354-439 237-324 (359)
80 cd03811 GT1_WabH_like This fam 98.4 7.9E-05 1.7E-09 72.4 22.9 78 354-439 247-332 (353)
81 cd04951 GT1_WbdM_like This fam 98.4 0.00019 4.1E-09 70.7 24.8 75 354-438 246-325 (360)
82 TIGR02470 sucr_synth sucrose s 98.4 0.0049 1.1E-07 65.9 35.5 79 352-437 619-707 (784)
83 cd04955 GT1_like_6 This family 98.3 0.00087 1.9E-08 66.0 27.5 74 354-439 249-330 (363)
84 KOG3349 Predicted glycosyltran 98.3 9E-06 1.9E-10 66.5 9.6 117 293-419 4-131 (170)
85 PLN02275 transferase, transfer 98.3 0.002 4.3E-08 64.1 28.8 74 354-437 287-371 (371)
86 cd03812 GT1_CapH_like This fam 98.2 0.0021 4.5E-08 63.2 27.5 83 352-446 249-336 (358)
87 PLN00142 sucrose synthase 98.2 0.003 6.4E-08 67.6 28.9 77 352-437 642-730 (815)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.2 0.0016 3.5E-08 63.4 24.5 315 10-439 51-386 (419)
89 TIGR03087 stp1 sugar transfera 98.1 0.001 2.2E-08 66.9 23.9 76 354-439 281-362 (397)
90 TIGR03088 stp2 sugar transfera 98.1 0.0036 7.9E-08 62.2 27.1 77 355-439 257-338 (374)
91 cd03809 GT1_mtfB_like This fam 98.1 0.0014 3.1E-08 64.3 24.0 85 354-450 254-345 (365)
92 COG0381 WecB UDP-N-acetylgluco 98.1 0.001 2.2E-08 64.2 21.4 82 354-447 263-347 (383)
93 TIGR02149 glgA_Coryne glycogen 98.1 0.006 1.3E-07 60.9 28.2 78 355-439 262-352 (388)
94 PRK00654 glgA glycogen synthas 98.1 0.0067 1.5E-07 62.3 28.9 83 351-438 336-427 (466)
95 TIGR03568 NeuC_NnaA UDP-N-acet 98.0 0.00038 8.2E-09 68.9 17.0 131 291-438 200-338 (365)
96 PF02350 Epimerase_2: UDP-N-ac 97.9 0.00027 5.9E-09 69.2 15.3 140 290-450 178-327 (346)
97 cd04950 GT1_like_1 Glycosyltra 97.9 0.021 4.5E-07 56.8 28.7 76 354-439 255-340 (373)
98 cd03806 GT1_ALG11_like This fa 97.9 0.016 3.4E-07 58.7 28.1 80 351-439 304-392 (419)
99 PRK01021 lpxB lipid-A-disaccha 97.9 0.039 8.4E-07 57.0 30.3 154 289-455 410-589 (608)
100 PLN02846 digalactosyldiacylgly 97.9 0.015 3.3E-07 58.8 27.1 72 357-439 288-363 (462)
101 PF02684 LpxB: Lipid-A-disacch 97.9 0.0044 9.5E-08 60.8 22.2 163 290-467 182-366 (373)
102 PRK15179 Vi polysaccharide bio 97.9 0.062 1.3E-06 57.4 32.2 92 352-451 574-673 (694)
103 TIGR02095 glgA glycogen/starch 97.8 0.036 7.8E-07 57.1 29.5 80 351-438 345-436 (473)
104 COG5017 Uncharacterized conser 97.8 0.00026 5.6E-09 57.0 9.3 110 295-421 2-122 (161)
105 cd03791 GT1_Glycogen_synthase_ 97.8 0.0098 2.1E-07 61.3 23.9 84 351-439 350-442 (476)
106 cd03792 GT1_Trehalose_phosphor 97.7 0.017 3.6E-07 57.4 23.1 75 355-439 254-337 (372)
107 TIGR02918 accessory Sec system 97.6 0.009 2E-07 61.6 21.3 93 355-453 378-482 (500)
108 PF13844 Glyco_transf_41: Glyc 97.6 0.0038 8.1E-08 62.7 16.8 140 290-439 282-430 (468)
109 PLN02949 transferase, transfer 97.5 0.14 3E-06 52.4 32.8 79 351-438 334-421 (463)
110 cd04946 GT1_AmsK_like This fam 97.5 0.0035 7.7E-08 63.2 15.7 81 354-439 290-377 (407)
111 PLN02316 synthase/transferase 97.5 0.17 3.6E-06 56.1 28.7 106 351-464 899-1019(1036)
112 PRK15484 lipopolysaccharide 1, 97.5 0.0091 2E-07 59.6 18.0 113 351-477 256-376 (380)
113 PRK15427 colanic acid biosynth 97.4 0.007 1.5E-07 61.0 16.3 111 352-476 279-403 (406)
114 PRK09814 beta-1,6-galactofuran 97.3 0.0014 3.1E-08 64.1 10.2 95 354-457 208-318 (333)
115 PF00534 Glycos_transf_1: Glyc 97.2 0.0033 7.1E-08 54.9 10.7 79 352-439 73-158 (172)
116 cd03813 GT1_like_3 This family 97.2 0.11 2.5E-06 53.4 23.1 78 354-439 355-442 (475)
117 cd03804 GT1_wbaZ_like This fam 97.1 0.0023 5.1E-08 63.0 9.3 125 296-439 198-326 (351)
118 COG0763 LpxB Lipid A disacchar 97.1 0.31 6.8E-06 47.3 22.6 179 285-477 181-380 (381)
119 PLN02501 digalactosyldiacylgly 97.1 0.55 1.2E-05 49.5 25.8 74 355-439 603-681 (794)
120 PRK10017 colanic acid biosynth 97.0 0.44 9.6E-06 48.0 31.8 99 365-477 323-423 (426)
121 COG1817 Uncharacterized protei 96.6 0.66 1.4E-05 43.6 20.1 105 15-148 7-113 (346)
122 PF13692 Glyco_trans_1_4: Glyc 96.5 0.013 2.8E-07 48.7 7.8 126 295-439 4-135 (135)
123 PRK15490 Vi polysaccharide bio 96.4 1.5 3.2E-05 45.4 25.1 72 354-433 456-532 (578)
124 PF13477 Glyco_trans_4_2: Glyc 96.3 0.054 1.2E-06 45.2 10.9 104 9-147 1-107 (139)
125 PF06722 DUF1205: Protein of u 96.3 0.0078 1.7E-07 46.8 4.8 51 281-331 29-84 (97)
126 cd01635 Glycosyltransferase_GT 96.2 0.85 1.8E-05 40.9 19.4 48 354-403 162-217 (229)
127 cd04949 GT1_gtfA_like This fam 96.1 0.077 1.7E-06 52.6 12.3 80 355-439 263-345 (372)
128 KOG4626 O-linked N-acetylgluco 95.9 0.13 2.7E-06 52.5 12.4 122 290-421 756-888 (966)
129 TIGR02193 heptsyl_trn_I lipopo 95.6 1.1 2.5E-05 43.3 17.9 131 291-437 178-319 (319)
130 PF13579 Glyco_trans_4_4: Glyc 95.3 0.039 8.5E-07 46.8 5.7 97 23-146 6-103 (160)
131 PRK10125 putative glycosyl tra 94.6 5.7 0.00012 39.9 29.2 102 310-436 258-368 (405)
132 PF13524 Glyco_trans_1_2: Glyc 94.5 0.3 6.4E-06 37.5 8.2 82 378-473 9-91 (92)
133 PHA01633 putative glycosyl tra 94.3 1.2 2.6E-05 43.3 13.7 85 350-438 199-306 (335)
134 PF01975 SurE: Survival protei 94.2 0.19 4.2E-06 44.7 7.5 41 8-49 1-41 (196)
135 COG3914 Spy Predicted O-linked 93.9 0.57 1.2E-05 47.7 10.6 120 290-420 427-560 (620)
136 PRK14098 glycogen synthase; Pr 93.4 1.7 3.7E-05 44.9 13.8 82 350-438 360-450 (489)
137 PF06258 Mito_fiss_Elm1: Mitoc 93.2 3.6 7.8E-05 39.6 14.6 58 362-421 221-281 (311)
138 TIGR02400 trehalose_OtsA alpha 92.8 0.99 2.1E-05 46.1 10.8 104 358-477 341-455 (456)
139 PF12000 Glyco_trans_4_3: Gkyc 91.9 2.4 5.3E-05 36.7 10.5 32 116-148 65-97 (171)
140 PHA01630 putative group 1 glyc 91.7 5.5 0.00012 38.8 14.2 76 359-439 196-294 (331)
141 PF13439 Glyco_transf_4: Glyco 90.0 3 6.4E-05 35.7 9.7 28 17-44 11-38 (177)
142 COG1618 Predicted nucleotide k 89.8 1.8 4E-05 36.8 7.4 42 5-46 3-44 (179)
143 PRK13932 stationary phase surv 89.4 6.9 0.00015 36.4 11.7 42 5-48 3-44 (257)
144 COG0859 RfaF ADP-heptose:LPS h 89.4 22 0.00048 34.6 17.9 104 8-145 2-108 (334)
145 PRK02261 methylaspartate mutas 89.2 1 2.2E-05 37.6 5.7 48 6-53 2-49 (137)
146 COG0003 ArsA Predicted ATPase 88.8 5.8 0.00013 38.3 11.3 39 8-46 2-41 (322)
147 cd03788 GT1_TPS Trehalose-6-Ph 87.7 2.1 4.5E-05 43.9 8.1 104 357-476 345-459 (460)
148 PF02374 ArsA_ATPase: Anion-tr 87.3 2.1 4.6E-05 41.1 7.4 40 8-47 1-41 (305)
149 PRK13933 stationary phase surv 86.9 13 0.00027 34.6 11.9 39 8-48 1-39 (253)
150 PF08660 Alg14: Oligosaccharid 86.5 7.3 0.00016 33.8 9.6 113 13-147 3-129 (170)
151 PRK10916 ADP-heptose:LPS hepto 86.5 7.1 0.00015 38.3 10.8 103 8-144 1-106 (348)
152 COG0496 SurE Predicted acid ph 86.0 8.4 0.00018 35.5 10.0 41 8-50 1-41 (252)
153 cd02070 corrinoid_protein_B12- 85.9 9.1 0.0002 34.3 10.3 48 6-53 81-128 (201)
154 TIGR02919 accessory Sec system 85.3 17 0.00036 37.0 12.8 91 355-455 330-426 (438)
155 PLN03063 alpha,alpha-trehalose 85.3 4.9 0.00011 44.2 9.7 106 360-480 363-479 (797)
156 cd02067 B12-binding B12 bindin 84.3 1.9 4.1E-05 34.9 4.7 44 9-52 1-44 (119)
157 PLN02939 transferase, transfer 84.2 28 0.00061 38.7 14.5 82 354-438 838-930 (977)
158 PRK10422 lipopolysaccharide co 84.1 9.6 0.00021 37.4 10.5 107 6-144 4-113 (352)
159 TIGR00715 precor6x_red precorr 83.5 6.2 0.00014 36.8 8.3 34 8-46 1-34 (256)
160 COG4370 Uncharacterized protei 82.7 4.6 9.9E-05 38.0 6.8 109 358-480 300-411 (412)
161 PF00731 AIRC: AIR carboxylase 82.5 25 0.00054 29.7 10.7 138 295-457 3-148 (150)
162 COG0541 Ffh Signal recognition 82.5 4.9 0.00011 39.9 7.3 45 5-49 98-142 (451)
163 cd00550 ArsA_ATPase Oxyanion-t 82.5 13 0.00029 34.6 10.2 43 10-53 3-45 (254)
164 COG0052 RpsB Ribosomal protein 82.3 14 0.0003 33.9 9.5 35 116-150 155-190 (252)
165 PRK14099 glycogen synthase; Pr 81.4 20 0.00043 37.1 11.9 38 6-43 2-45 (485)
166 COG1703 ArgK Putative periplas 80.9 21 0.00046 33.8 10.5 41 6-46 50-90 (323)
167 TIGR01007 eps_fam capsular exo 80.8 28 0.0006 31.0 11.4 39 8-46 17-57 (204)
168 COG0552 FtsY Signal recognitio 80.7 7 0.00015 37.5 7.5 47 7-53 139-185 (340)
169 cd03789 GT1_LPS_heptosyltransf 78.8 25 0.00054 33.1 11.0 102 9-144 1-105 (279)
170 PF02951 GSH-S_N: Prokaryotic 78.4 3.5 7.5E-05 33.4 4.1 38 8-45 1-41 (119)
171 TIGR02201 heptsyl_trn_III lipo 78.3 23 0.00049 34.6 10.8 105 9-144 1-108 (344)
172 cd01425 RPS2 Ribosomal protein 78.2 11 0.00024 33.4 7.8 116 22-149 43-160 (193)
173 COG2894 MinD Septum formation 77.7 15 0.00032 33.1 8.0 37 9-45 3-41 (272)
174 COG3660 Predicted nucleoside-d 77.6 61 0.0013 30.2 17.4 97 290-397 160-271 (329)
175 TIGR02195 heptsyl_trn_II lipop 77.0 16 0.00036 35.4 9.4 102 9-144 1-105 (334)
176 PRK00346 surE 5'(3')-nucleotid 76.7 41 0.00089 31.2 11.2 39 8-48 1-39 (250)
177 COG0438 RfaG Glycosyltransfera 76.7 67 0.0015 30.1 16.4 78 354-439 258-342 (381)
178 PRK10964 ADP-heptose:LPS hepto 76.7 14 0.0003 35.8 8.6 41 8-48 1-43 (322)
179 PRK05986 cob(I)alamin adenolsy 76.6 36 0.00077 30.1 10.2 106 6-128 21-126 (191)
180 PRK13934 stationary phase surv 76.4 46 0.00099 31.2 11.3 39 8-48 1-39 (266)
181 TIGR00087 surE 5'/3'-nucleotid 76.3 22 0.00048 32.9 9.3 115 8-147 1-128 (244)
182 PRK13935 stationary phase surv 76.0 33 0.00072 31.8 10.3 39 8-48 1-39 (253)
183 PF02441 Flavoprotein: Flavopr 75.9 4 8.6E-05 33.6 4.0 40 8-48 1-40 (129)
184 COG4088 Predicted nucleotide k 75.8 37 0.00081 30.4 9.9 104 10-151 4-112 (261)
185 PRK10867 signal recognition pa 75.7 13 0.00027 37.7 8.1 43 7-49 100-143 (433)
186 TIGR01425 SRP54_euk signal rec 75.4 14 0.00031 37.1 8.4 42 7-48 100-141 (429)
187 cd00561 CobA_CobO_BtuR ATP:cor 75.3 31 0.00067 29.5 9.3 34 9-42 4-37 (159)
188 COG2861 Uncharacterized protei 74.7 39 0.00085 30.8 10.0 41 98-145 137-179 (250)
189 PF07015 VirC1: VirC1 protein; 74.5 69 0.0015 29.3 11.7 38 11-48 5-43 (231)
190 PRK11519 tyrosine kinase; Prov 74.0 83 0.0018 34.4 14.5 119 7-146 525-667 (719)
191 TIGR03029 EpsG chain length de 73.8 45 0.00098 31.3 11.2 39 6-44 101-141 (274)
192 PF05159 Capsule_synth: Capsul 72.8 24 0.00052 33.1 9.0 42 355-399 185-226 (269)
193 TIGR02370 pyl_corrinoid methyl 72.7 9.1 0.0002 34.1 5.7 49 5-53 82-130 (197)
194 KOG2941 Beta-1,4-mannosyltrans 72.1 75 0.0016 30.9 11.6 61 3-73 8-70 (444)
195 PRK02797 4-alpha-L-fucosyltran 72.0 57 0.0012 31.2 10.9 80 354-438 207-293 (322)
196 PF02310 B12-binding: B12 bind 71.7 12 0.00026 30.1 5.8 45 8-52 1-45 (121)
197 cd03793 GT1_Glycogen_synthase_ 71.6 11 0.00024 39.2 6.7 74 362-438 467-551 (590)
198 PF12146 Hydrolase_4: Putative 70.8 11 0.00024 28.0 4.9 37 7-43 15-51 (79)
199 PRK14501 putative bifunctional 70.6 11 0.00024 41.1 7.0 113 356-480 345-464 (726)
200 PF00448 SRP54: SRP54-type pro 69.9 9.8 0.00021 33.9 5.3 39 9-47 3-41 (196)
201 PRK06849 hypothetical protein; 69.7 40 0.00088 33.6 10.3 35 7-45 4-38 (389)
202 TIGR02015 BchY chlorophyllide 69.7 46 0.00099 33.7 10.6 32 8-44 286-317 (422)
203 PF04413 Glycos_transf_N: 3-De 69.6 22 0.00048 31.3 7.4 101 9-147 22-126 (186)
204 TIGR03713 acc_sec_asp1 accesso 69.2 22 0.00048 37.0 8.4 72 355-439 411-488 (519)
205 PF09314 DUF1972: Domain of un 68.4 84 0.0018 27.7 10.6 46 18-72 16-62 (185)
206 PF04127 DFP: DNA / pantothena 67.5 4.9 0.00011 35.4 2.8 39 7-45 3-53 (185)
207 PRK12311 rpsB 30S ribosomal pr 67.5 20 0.00044 34.6 7.1 35 116-150 151-186 (326)
208 COG3640 CooC CO dehydrogenase 66.7 89 0.0019 28.7 10.4 40 8-47 1-41 (255)
209 COG0299 PurN Folate-dependent 66.5 32 0.0007 30.3 7.4 121 306-453 63-186 (200)
210 cd02071 MM_CoA_mut_B12_BD meth 66.2 12 0.00027 30.3 4.8 44 9-52 1-44 (122)
211 COG1484 DnaC DNA replication p 66.0 8.6 0.00019 35.9 4.3 48 6-53 104-151 (254)
212 PF06564 YhjQ: YhjQ protein; 65.7 1.1E+02 0.0023 28.3 11.2 28 16-43 11-38 (243)
213 TIGR00708 cobA cob(I)alamin ad 65.7 83 0.0018 27.4 9.9 34 8-41 6-39 (173)
214 cd01965 Nitrogenase_MoFe_beta_ 65.7 30 0.00065 35.1 8.5 27 116-146 370-396 (428)
215 PF06925 MGDG_synth: Monogalac 65.5 18 0.00039 31.2 6.0 45 94-147 74-124 (169)
216 CHL00175 minD septum-site dete 65.4 1.2E+02 0.0026 28.5 12.5 39 8-46 15-55 (281)
217 cd03114 ArgK-like The function 65.0 74 0.0016 26.7 9.5 36 10-45 2-37 (148)
218 PRK13931 stationary phase surv 64.9 68 0.0015 30.0 9.9 99 23-147 15-129 (261)
219 PF01075 Glyco_transf_9: Glyco 64.9 13 0.00029 34.1 5.4 100 290-397 103-208 (247)
220 TIGR02195 heptsyl_trn_II lipop 64.7 78 0.0017 30.6 11.0 100 7-147 174-278 (334)
221 PRK08305 spoVFB dipicolinate s 64.7 8.8 0.00019 34.1 3.8 40 6-46 4-44 (196)
222 TIGR03018 pepcterm_TyrKin exop 64.6 1E+02 0.0023 27.4 12.9 41 6-46 33-76 (207)
223 PF02142 MGS: MGS-like domain 64.4 13 0.00029 28.5 4.4 85 24-143 2-94 (95)
224 cd02037 MRP-like MRP (Multiple 64.3 30 0.00065 29.7 7.2 32 14-45 7-38 (169)
225 cd02069 methionine_synthase_B1 63.5 17 0.00038 32.8 5.6 48 6-53 87-134 (213)
226 smart00851 MGS MGS-like domain 63.4 52 0.0011 24.8 7.6 27 24-52 2-28 (90)
227 COG2185 Sbm Methylmalonyl-CoA 63.1 16 0.00034 30.5 4.8 39 5-43 10-48 (143)
228 TIGR00347 bioD dethiobiotin sy 62.7 86 0.0019 26.7 9.8 28 14-41 5-32 (166)
229 PF01075 Glyco_transf_9: Glyco 62.5 33 0.00072 31.5 7.6 103 6-148 104-211 (247)
230 TIGR01501 MthylAspMutase methy 62.4 19 0.00042 29.8 5.2 47 7-53 1-47 (134)
231 cd03115 SRP The signal recogni 61.5 66 0.0014 27.6 8.9 38 10-47 3-40 (173)
232 TIGR02398 gluc_glyc_Psyn gluco 61.1 1.1E+02 0.0023 31.7 11.3 111 355-480 364-484 (487)
233 TIGR01005 eps_transp_fam exopo 61.1 1.3E+02 0.0027 33.2 12.9 40 7-46 545-586 (754)
234 PF00862 Sucrose_synth: Sucros 60.9 11 0.00024 38.3 4.1 120 17-147 295-432 (550)
235 TIGR00959 ffh signal recogniti 60.8 36 0.00078 34.4 7.8 42 8-49 100-142 (428)
236 COG2910 Putative NADH-flavin r 60.0 17 0.00038 31.7 4.6 33 8-44 1-33 (211)
237 PF00551 Formyl_trans_N: Formy 60.0 66 0.0014 28.1 8.6 27 8-37 1-27 (181)
238 cd01980 Chlide_reductase_Y Chl 59.7 26 0.00057 35.4 6.8 27 116-146 349-375 (416)
239 TIGR00064 ftsY signal recognit 59.4 55 0.0012 30.8 8.5 39 8-46 73-111 (272)
240 PF06506 PrpR_N: Propionate ca 59.3 72 0.0016 27.7 8.7 111 19-149 17-153 (176)
241 PF04464 Glyphos_transf: CDP-G 59.2 14 0.00029 36.6 4.6 107 355-476 254-367 (369)
242 COG0859 RfaF ADP-heptose:LPS h 58.3 65 0.0014 31.3 9.1 100 7-148 175-279 (334)
243 PRK13789 phosphoribosylamine-- 58.2 28 0.00061 35.2 6.7 36 6-46 3-38 (426)
244 PF01210 NAD_Gly3P_dh_N: NAD-d 58.2 6.7 0.00015 33.5 1.9 32 9-45 1-32 (157)
245 cd03789 GT1_LPS_heptosyltransf 58.1 40 0.00087 31.7 7.5 96 292-397 121-223 (279)
246 PRK14974 cell division protein 57.9 38 0.00083 33.0 7.2 41 7-47 140-180 (336)
247 PRK11889 flhF flagellar biosyn 57.8 65 0.0014 32.2 8.7 41 7-47 241-281 (436)
248 PRK10916 ADP-heptose:LPS hepto 57.6 42 0.00091 32.8 7.7 103 8-147 181-288 (348)
249 KOG0780 Signal recognition par 57.5 57 0.0012 32.2 8.0 41 7-47 101-141 (483)
250 cd01974 Nitrogenase_MoFe_beta 57.0 1.1E+02 0.0025 31.0 10.9 27 116-146 376-402 (435)
251 KOG2825 Putative arsenite-tran 56.7 1.1E+02 0.0025 28.3 9.3 43 5-47 16-59 (323)
252 PRK00090 bioD dithiobiotin syn 56.4 1.4E+02 0.0029 26.9 10.4 33 10-42 2-35 (222)
253 PF03808 Glyco_tran_WecB: Glyc 56.1 1.1E+02 0.0024 26.5 9.2 95 24-150 37-136 (172)
254 PRK06732 phosphopantothenate-- 55.7 18 0.00039 33.1 4.4 37 8-44 1-49 (229)
255 PF06506 PrpR_N: Propionate ca 55.3 14 0.0003 32.3 3.4 32 368-400 31-62 (176)
256 cd01423 MGS_CPS_I_III Methylgl 55.3 1.1E+02 0.0023 24.4 8.5 87 20-144 11-106 (116)
257 PF10083 DUF2321: Uncharacteri 55.1 32 0.00069 29.0 5.2 78 396-481 77-154 (158)
258 PRK05920 aromatic acid decarbo 55.1 17 0.00036 32.6 3.9 43 7-50 3-45 (204)
259 COG2109 BtuR ATP:corrinoid ade 54.1 1.5E+02 0.0032 26.2 9.3 99 10-129 31-134 (198)
260 PF07429 Glyco_transf_56: 4-al 53.2 2.3E+02 0.005 27.7 11.9 80 354-438 246-332 (360)
261 COG2874 FlaH Predicted ATPases 53.2 25 0.00054 31.7 4.6 36 12-47 33-68 (235)
262 TIGR01283 nifE nitrogenase mol 53.2 1.7E+02 0.0037 29.9 11.5 26 116-145 394-419 (456)
263 PRK09841 cryptic autophosphory 52.8 1.4E+02 0.0031 32.6 11.4 40 7-46 530-571 (726)
264 PRK14099 glycogen synthase; Pr 52.5 23 0.00049 36.6 5.0 82 351-436 349-441 (485)
265 PF10649 DUF2478: Protein of u 51.9 1.5E+02 0.0033 25.3 10.2 117 11-152 2-136 (159)
266 TIGR02852 spore_dpaB dipicolin 51.4 18 0.00039 31.9 3.5 39 8-46 1-39 (187)
267 PRK09620 hypothetical protein; 50.8 29 0.00063 31.8 4.9 39 6-44 2-52 (229)
268 PRK10416 signal recognition pa 50.8 1.4E+02 0.003 28.9 9.8 41 7-47 114-154 (318)
269 PRK11823 DNA repair protein Ra 50.3 57 0.0012 33.3 7.4 43 9-51 82-124 (446)
270 PF02571 CbiJ: Precorrin-6x re 50.2 52 0.0011 30.6 6.5 92 8-145 1-99 (249)
271 COG1066 Sms Predicted ATP-depe 50.0 15 0.00032 36.5 2.9 41 9-50 95-135 (456)
272 CHL00072 chlL photochlorophyll 50.0 29 0.00063 33.0 5.0 39 8-46 1-39 (290)
273 TIGR01968 minD_bact septum sit 49.4 2.1E+02 0.0046 26.2 11.3 36 10-45 4-40 (261)
274 PRK06718 precorrin-2 dehydroge 49.3 1.9E+02 0.0042 25.7 10.6 145 289-458 8-165 (202)
275 TIGR02329 propionate_PrpR prop 49.2 1.4E+02 0.0031 31.2 10.2 111 18-148 36-172 (526)
276 PRK14478 nitrogenase molybdenu 49.1 1.6E+02 0.0034 30.4 10.4 26 116-145 392-417 (475)
277 PRK10490 sensor protein KdpD; 49.0 76 0.0017 35.7 8.8 40 5-44 22-61 (895)
278 PF07355 GRDB: Glycine/sarcosi 48.8 38 0.00082 32.8 5.4 41 100-145 68-117 (349)
279 COG0041 PurE Phosphoribosylcar 48.8 1.7E+02 0.0036 24.8 9.5 138 294-460 4-153 (162)
280 PF04748 Polysacc_deac_2: Dive 48.7 1.5E+02 0.0033 26.8 9.1 40 98-145 105-147 (213)
281 PLN02470 acetolactate synthase 48.5 69 0.0015 34.0 8.0 93 298-399 2-110 (585)
282 TIGR02655 circ_KaiC circadian 47.9 57 0.0012 33.7 7.1 46 8-53 264-309 (484)
283 PRK12446 undecaprenyldiphospho 47.8 78 0.0017 31.1 7.8 92 293-399 3-122 (352)
284 TIGR03499 FlhF flagellar biosy 47.8 85 0.0018 29.7 7.8 40 8-47 195-236 (282)
285 PRK07313 phosphopantothenoylcy 47.4 22 0.00048 31.2 3.5 38 8-46 2-39 (182)
286 TIGR02201 heptsyl_trn_III lipo 46.8 68 0.0015 31.2 7.2 99 291-397 180-285 (344)
287 TIGR01285 nifN nitrogenase mol 46.7 2.1E+02 0.0045 29.1 10.8 87 7-145 311-397 (432)
288 cd07039 TPP_PYR_POX Pyrimidine 46.5 1.2E+02 0.0026 26.0 7.9 28 372-399 64-97 (164)
289 PF00318 Ribosomal_S2: Ribosom 46.4 1.2E+02 0.0026 27.3 8.1 34 116-149 142-176 (211)
290 cd03466 Nitrogenase_NifN_2 Nit 45.7 1.7E+02 0.0037 29.6 10.1 26 116-145 371-396 (429)
291 PF01012 ETF: Electron transfe 45.5 65 0.0014 27.5 6.1 31 117-147 90-122 (164)
292 TIGR00640 acid_CoA_mut_C methy 45.4 57 0.0012 26.9 5.4 46 7-52 2-47 (132)
293 COG0801 FolK 7,8-dihydro-6-hyd 45.1 44 0.00095 28.6 4.7 29 294-322 3-31 (160)
294 PRK10422 lipopolysaccharide co 44.9 1.2E+02 0.0026 29.6 8.7 99 291-397 182-287 (352)
295 cd02032 Bchl_like This family 44.9 35 0.00077 31.9 4.7 38 8-45 1-38 (267)
296 PF01695 IstB_IS21: IstB-like 44.8 26 0.00056 30.6 3.5 47 6-52 46-92 (178)
297 PRK05299 rpsB 30S ribosomal pr 44.8 1.5E+02 0.0032 27.8 8.6 33 116-148 156-189 (258)
298 PRK11199 tyrA bifunctional cho 44.7 2.2E+02 0.0049 28.2 10.5 33 7-44 98-131 (374)
299 PRK13982 bifunctional SbtC-lik 44.6 34 0.00074 35.0 4.7 40 6-45 255-306 (475)
300 cd01424 MGS_CPS_II Methylglyox 44.5 1.5E+02 0.0033 23.2 7.7 84 19-144 10-100 (110)
301 PF02702 KdpD: Osmosensitive K 44.4 35 0.00075 30.4 4.1 39 6-44 4-42 (211)
302 PRK13011 formyltetrahydrofolat 44.0 2.2E+02 0.0048 27.0 9.9 106 4-146 86-194 (286)
303 PRK10964 ADP-heptose:LPS hepto 43.6 1E+02 0.0023 29.6 7.9 132 292-438 178-321 (322)
304 TIGR00379 cobB cobyrinic acid 43.4 2.4E+02 0.0051 28.9 10.7 34 10-43 2-36 (449)
305 cd01121 Sms Sms (bacterial rad 43.2 37 0.0008 33.6 4.7 42 10-51 85-126 (372)
306 COG0287 TyrA Prephenate dehydr 43.1 2.5E+02 0.0055 26.5 10.1 42 7-53 3-44 (279)
307 cd02034 CooC The accessory pro 42.9 56 0.0012 26.2 4.9 37 9-45 1-37 (116)
308 CHL00067 rps2 ribosomal protei 42.3 1.7E+02 0.0037 26.8 8.5 35 116-150 160-195 (230)
309 TIGR01281 DPOR_bchL light-inde 42.2 42 0.00091 31.4 4.8 38 8-45 1-38 (268)
310 TIGR00421 ubiX_pad polyprenyl 42.1 26 0.00056 30.8 3.1 40 10-50 2-41 (181)
311 PRK06029 3-octaprenyl-4-hydrox 42.0 31 0.00067 30.4 3.5 42 8-50 2-44 (185)
312 TIGR00345 arsA arsenite-activa 42.0 1.5E+02 0.0032 28.1 8.5 23 25-47 3-25 (284)
313 cd01452 VWA_26S_proteasome_sub 41.9 1.8E+02 0.0038 25.7 8.2 63 8-73 108-174 (187)
314 COG4306 Uncharacterized protei 41.7 53 0.0011 26.4 4.3 101 374-480 29-153 (160)
315 PRK12342 hypothetical protein; 41.7 52 0.0011 30.7 5.1 31 117-147 109-144 (254)
316 PRK06321 replicative DNA helic 41.2 3E+02 0.0065 28.3 11.0 44 10-53 229-273 (472)
317 TIGR00750 lao LAO/AO transport 41.2 3.2E+02 0.007 26.0 10.9 41 6-46 33-73 (300)
318 TIGR01011 rpsB_bact ribosomal 41.1 2E+02 0.0044 26.2 8.8 33 116-149 154-188 (225)
319 cd06533 Glyco_transf_WecG_TagA 40.8 2.1E+02 0.0046 24.6 8.6 92 24-146 35-131 (171)
320 PRK06522 2-dehydropantoate 2-r 40.7 31 0.00067 32.9 3.7 31 8-43 1-31 (304)
321 TIGR02113 coaC_strep phosphopa 40.6 35 0.00075 29.8 3.6 36 9-45 2-37 (177)
322 PLN02939 transferase, transfer 40.6 53 0.0011 36.7 5.6 40 5-44 479-524 (977)
323 PRK06921 hypothetical protein; 40.5 2.3E+02 0.005 26.6 9.4 37 7-43 117-154 (266)
324 PF02572 CobA_CobO_BtuR: ATP:c 40.5 74 0.0016 27.6 5.5 101 8-128 4-107 (172)
325 PF01372 Melittin: Melittin; 40.5 5.5 0.00012 21.8 -0.9 17 380-396 1-17 (26)
326 TIGR01917 gly_red_sel_B glycin 39.9 59 0.0013 32.4 5.3 40 101-145 65-113 (431)
327 TIGR01918 various_sel_PB selen 39.9 60 0.0013 32.4 5.4 40 101-145 65-113 (431)
328 TIGR01969 minD_arch cell divis 39.7 2.9E+02 0.0064 25.1 11.9 36 10-45 3-39 (251)
329 COG1090 Predicted nucleoside-d 39.6 1.6E+02 0.0035 27.8 7.8 21 25-45 12-32 (297)
330 PRK09165 replicative DNA helic 39.6 3E+02 0.0066 28.5 10.9 45 9-53 219-278 (497)
331 PRK06249 2-dehydropantoate 2-r 39.5 35 0.00075 32.9 3.8 35 6-45 4-38 (313)
332 PRK01077 cobyrinic acid a,c-di 39.4 59 0.0013 33.2 5.6 35 9-43 5-40 (451)
333 PF04493 Endonuclease_5: Endon 39.2 37 0.00081 30.4 3.6 41 99-145 77-123 (206)
334 PRK06067 flagellar accessory p 39.2 60 0.0013 29.6 5.2 45 8-52 26-70 (234)
335 PRK12921 2-dehydropantoate 2-r 39.0 32 0.0007 32.8 3.6 38 8-50 1-38 (305)
336 COG1036 Archaeal flavoproteins 38.9 68 0.0015 27.3 4.8 51 3-55 4-57 (187)
337 PF09001 DUF1890: Domain of un 38.8 32 0.0007 28.3 2.8 33 18-50 10-42 (139)
338 PRK06719 precorrin-2 dehydroge 38.5 48 0.001 28.3 4.1 38 7-50 13-50 (157)
339 cd02065 B12-binding_like B12 b 38.5 67 0.0015 25.7 4.9 43 10-52 2-44 (125)
340 PRK05234 mgsA methylglyoxal sy 38.1 2.4E+02 0.0052 23.6 9.3 101 5-146 2-113 (142)
341 PRK06027 purU formyltetrahydro 37.9 3.3E+02 0.0071 25.9 10.0 114 1-148 83-196 (286)
342 cd06559 Endonuclease_V Endonuc 37.8 33 0.00072 30.8 3.1 41 99-145 81-127 (208)
343 PRK13768 GTPase; Provisional 37.8 1.3E+02 0.0028 28.0 7.2 37 9-45 4-40 (253)
344 cd02072 Glm_B12_BD B12 binding 37.8 66 0.0014 26.4 4.5 45 9-53 1-45 (128)
345 PLN02948 phosphoribosylaminoim 37.3 3.3E+02 0.0071 28.9 10.9 85 372-461 466-562 (577)
346 cd07038 TPP_PYR_PDC_IPDC_like 37.3 1.1E+02 0.0023 26.2 6.1 28 372-399 60-93 (162)
347 TIGR02700 flavo_MJ0208 archaeo 37.1 47 0.001 30.5 4.1 36 10-45 2-39 (234)
348 PRK13604 luxD acyl transferase 36.9 78 0.0017 30.4 5.6 37 6-42 35-71 (307)
349 COG0489 Mrp ATPases involved i 36.9 2.8E+02 0.006 26.0 9.3 36 15-50 66-101 (265)
350 PRK14098 glycogen synthase; Pr 36.9 58 0.0013 33.7 5.2 37 7-43 5-47 (489)
351 PRK03359 putative electron tra 36.5 66 0.0014 30.0 4.9 31 117-147 112-147 (256)
352 TIGR00682 lpxK tetraacyldisacc 36.2 78 0.0017 30.5 5.5 30 14-43 37-66 (311)
353 PRK07773 replicative DNA helic 35.9 2.5E+02 0.0055 31.5 10.3 45 9-53 219-264 (886)
354 PF08323 Glyco_transf_5: Starc 35.9 30 0.00065 32.0 2.6 23 22-44 20-42 (245)
355 PF02606 LpxK: Tetraacyldisacc 35.7 2.1E+02 0.0046 27.8 8.5 31 13-43 43-73 (326)
356 KOG0781 Signal recognition par 35.6 64 0.0014 32.8 4.8 48 6-53 377-424 (587)
357 PRK05784 phosphoribosylamine-- 35.5 2.1E+02 0.0045 29.7 8.8 31 8-43 1-33 (486)
358 PRK08993 2-deoxy-D-gluconate 3 35.5 2.5E+02 0.0055 25.6 8.9 33 8-43 10-42 (253)
359 COG0771 MurD UDP-N-acetylmuram 35.1 61 0.0013 32.9 4.8 39 2-46 3-41 (448)
360 TIGR01470 cysG_Nterm siroheme 34.9 3.3E+02 0.0072 24.3 9.3 146 290-458 8-165 (205)
361 COG2099 CobK Precorrin-6x redu 34.7 2.8E+02 0.0061 25.7 8.4 80 24-145 14-99 (257)
362 TIGR02699 archaeo_AfpA archaeo 34.5 60 0.0013 28.3 4.1 36 10-46 2-39 (174)
363 cd01968 Nitrogenase_NifE_I Nit 34.4 4E+02 0.0086 26.8 10.6 26 116-145 355-380 (410)
364 TIGR00416 sms DNA repair prote 34.4 44 0.00095 34.2 3.7 43 9-51 96-138 (454)
365 PRK06395 phosphoribosylamine-- 34.1 1.9E+02 0.0041 29.4 8.3 31 8-43 3-33 (435)
366 TIGR03880 KaiC_arch_3 KaiC dom 34.1 1.4E+02 0.0031 26.8 6.8 46 8-53 17-62 (224)
367 TIGR03575 selen_PSTK_euk L-ser 33.7 4.7E+02 0.01 25.6 10.8 38 10-47 2-40 (340)
368 TIGR03815 CpaE_hom_Actino heli 33.5 4.4E+02 0.0096 25.3 11.1 40 7-46 92-133 (322)
369 KOG0832 Mitochondrial/chloropl 33.4 27 0.00059 31.4 1.8 115 17-150 90-207 (251)
370 COG4566 TtrR Response regulato 33.4 1.8E+02 0.0039 25.7 6.7 50 388-439 73-122 (202)
371 PF08452 DNAP_B_exo_N: DNA pol 33.4 32 0.0007 18.2 1.3 17 281-297 4-20 (22)
372 PRK14619 NAD(P)H-dependent gly 33.1 53 0.0012 31.5 4.0 34 6-44 3-36 (308)
373 PRK06835 DNA replication prote 33.1 57 0.0012 31.7 4.1 44 7-50 183-226 (329)
374 PF06180 CbiK: Cobalt chelatas 32.5 73 0.0016 29.8 4.6 37 293-329 2-41 (262)
375 PRK05632 phosphate acetyltrans 32.1 6.9E+02 0.015 27.2 12.8 35 9-43 4-39 (684)
376 PRK05703 flhF flagellar biosyn 32.0 3.5E+02 0.0076 27.4 9.7 40 8-47 222-263 (424)
377 PRK04148 hypothetical protein; 32.0 95 0.0021 25.7 4.6 34 6-45 16-49 (134)
378 COG0569 TrkA K+ transport syst 31.8 53 0.0012 29.9 3.5 33 8-45 1-33 (225)
379 PRK14477 bifunctional nitrogen 31.8 4E+02 0.0086 30.2 10.9 28 116-147 388-415 (917)
380 PRK05114 hypothetical protein; 31.8 1.6E+02 0.0035 20.2 4.7 35 442-480 11-45 (59)
381 KOG3339 Predicted glycosyltran 31.6 3.6E+02 0.0079 23.7 8.4 37 9-46 40-78 (211)
382 PF06792 UPF0261: Uncharacteri 31.5 5.5E+02 0.012 25.8 16.1 98 290-402 183-281 (403)
383 PRK06603 enoyl-(acyl carrier p 31.2 1E+02 0.0022 28.5 5.5 42 1-43 1-42 (260)
384 KOG1209 1-Acyl dihydroxyaceton 31.2 68 0.0015 28.9 3.8 37 1-42 1-39 (289)
385 PF13450 NAD_binding_8: NAD(P) 31.2 59 0.0013 23.1 3.0 20 25-44 9-28 (68)
386 KOG3062 RNA polymerase II elon 31.1 89 0.0019 28.5 4.5 34 10-43 4-38 (281)
387 PF05225 HTH_psq: helix-turn-h 30.9 61 0.0013 21.0 2.7 26 425-451 1-26 (45)
388 TIGR01286 nifK nitrogenase mol 30.9 2.6E+02 0.0057 29.1 8.7 26 116-145 436-461 (515)
389 PRK05636 replicative DNA helic 30.9 96 0.0021 32.2 5.5 45 8-52 266-311 (505)
390 PRK05579 bifunctional phosphop 30.7 73 0.0016 31.9 4.5 44 6-50 5-48 (399)
391 TIGR00313 cobQ cobyric acid sy 30.7 6.2E+02 0.013 26.1 12.3 28 16-43 8-35 (475)
392 COG0240 GpsA Glycerol-3-phosph 30.3 1.4E+02 0.003 28.9 6.1 34 8-46 2-35 (329)
393 TIGR02193 heptsyl_trn_I lipopo 30.2 2.4E+02 0.0051 27.0 8.0 28 117-147 254-281 (319)
394 COG3195 Uncharacterized protei 30.1 2.3E+02 0.0049 24.3 6.5 97 359-456 61-164 (176)
395 COG1154 Dxs Deoxyxylulose-5-ph 29.9 5.2E+02 0.011 27.4 10.3 116 281-437 491-622 (627)
396 PRK14092 2-amino-4-hydroxy-6-h 29.7 1.2E+02 0.0025 26.2 5.0 31 291-321 6-36 (163)
397 PRK12815 carB carbamoyl phosph 29.5 6.1E+02 0.013 29.3 12.1 45 1-45 1-51 (1068)
398 cd01840 SGNH_hydrolase_yrhL_li 29.2 91 0.002 26.1 4.4 39 290-329 49-87 (150)
399 PF13419 HAD_2: Haloacid dehal 29.1 3.3E+02 0.0072 22.6 8.1 27 117-145 150-176 (176)
400 PRK12723 flagellar biosynthesi 29.1 3.8E+02 0.0081 26.8 9.2 41 8-48 175-219 (388)
401 COG0503 Apt Adenine/guanine ph 29.0 1.2E+02 0.0026 26.5 5.1 29 116-145 52-82 (179)
402 PRK08939 primosomal protein Dn 29.0 73 0.0016 30.6 4.1 46 7-52 156-201 (306)
403 PRK03094 hypothetical protein; 28.9 51 0.0011 24.5 2.2 20 24-43 10-29 (80)
404 TIGR01162 purE phosphoribosyla 28.8 3.7E+02 0.008 22.9 9.5 134 298-458 4-147 (156)
405 PRK07206 hypothetical protein; 28.8 1.9E+02 0.0041 29.0 7.3 33 8-45 3-35 (416)
406 cd01983 Fer4_NifH The Fer4_Nif 28.6 1.3E+02 0.0028 22.2 4.8 33 10-42 2-34 (99)
407 COG2099 CobK Precorrin-6x redu 28.5 1.7E+02 0.0038 27.1 6.1 108 24-146 117-229 (257)
408 PRK06731 flhF flagellar biosyn 28.5 4.8E+02 0.01 24.6 9.3 42 6-47 74-115 (270)
409 PF04244 DPRP: Deoxyribodipyri 28.5 61 0.0013 29.5 3.3 25 20-44 47-71 (224)
410 KOG2380 Prephenate dehydrogena 28.4 58 0.0012 31.5 3.1 46 4-55 49-94 (480)
411 TIGR00521 coaBC_dfp phosphopan 28.2 66 0.0014 32.1 3.7 41 7-48 3-43 (390)
412 PRK13011 formyltetrahydrofolat 28.2 5.2E+02 0.011 24.5 9.9 115 311-452 155-271 (286)
413 PRK00784 cobyric acid synthase 28.1 5.6E+02 0.012 26.5 10.7 34 10-43 5-39 (488)
414 PRK13236 nitrogenase reductase 28.1 1.1E+02 0.0025 29.1 5.3 39 7-45 5-44 (296)
415 PRK13010 purU formyltetrahydro 28.0 5E+02 0.011 24.7 9.4 115 311-452 159-275 (289)
416 PF03701 UPF0181: Uncharacteri 27.9 1.9E+02 0.0041 19.3 4.9 35 442-480 11-45 (51)
417 PF03693 RHH_2: Uncharacterise 27.9 1.1E+02 0.0025 22.6 4.1 51 425-480 29-79 (80)
418 PF04558 tRNA_synt_1c_R1: Glut 27.8 1.2E+02 0.0027 26.1 4.8 29 406-439 104-132 (164)
419 PRK10353 3-methyl-adenine DNA 27.6 2.9E+02 0.0062 24.4 7.1 60 395-456 21-97 (187)
420 cd07025 Peptidase_S66 LD-Carbo 27.6 1.3E+02 0.0027 28.6 5.4 76 303-400 44-121 (282)
421 PRK14618 NAD(P)H-dependent gly 27.5 81 0.0018 30.5 4.2 34 6-44 3-36 (328)
422 cd00672 CysRS_core catalytic c 27.5 3.9E+02 0.0085 24.0 8.3 94 16-144 34-131 (213)
423 PRK08334 translation initiatio 27.5 4.9E+02 0.011 25.6 9.3 34 10-43 163-199 (356)
424 COG0467 RAD55 RecA-superfamily 27.4 1.3E+02 0.0027 28.0 5.3 47 7-53 23-69 (260)
425 KOG0541 Alkyl hydroperoxide re 27.4 1.2E+02 0.0027 25.7 4.5 63 8-73 44-113 (171)
426 COG0504 PyrG CTP synthase (UTP 27.2 1.3E+02 0.0028 30.8 5.4 40 8-47 1-43 (533)
427 PRK08057 cobalt-precorrin-6x r 26.7 5.1E+02 0.011 24.0 9.1 32 8-44 3-34 (248)
428 PF03721 UDPG_MGDP_dh_N: UDP-g 26.4 95 0.0021 27.3 4.0 32 8-44 1-32 (185)
429 KOG0853 Glycosyltransferase [C 26.3 32 0.0007 35.2 1.1 57 383-448 381-440 (495)
430 PRK08155 acetolactate synthase 26.1 1.2E+02 0.0027 31.9 5.6 91 299-398 4-109 (564)
431 cd08783 Death_MALT1 Death doma 26.1 2.5E+02 0.0055 21.6 5.5 67 401-481 20-86 (97)
432 TIGR01369 CPSaseII_lrg carbamo 26.0 5.4E+02 0.012 29.7 10.9 40 6-45 553-598 (1050)
433 PLN00016 RNA-binding protein; 26.0 88 0.0019 31.0 4.2 36 7-44 52-89 (378)
434 PRK08229 2-dehydropantoate 2-r 26.0 61 0.0013 31.5 3.1 32 8-44 3-34 (341)
435 TIGR03574 selen_PSTK L-seryl-t 26.0 5.1E+02 0.011 23.7 10.2 35 10-44 2-36 (249)
436 PF12695 Abhydrolase_5: Alpha/ 25.8 1.5E+02 0.0033 23.9 5.1 34 11-44 2-35 (145)
437 TIGR00288 conserved hypothetic 25.8 1.8E+02 0.0039 24.9 5.4 34 17-53 114-148 (160)
438 PRK13059 putative lipid kinase 25.8 2.6E+02 0.0056 26.6 7.2 27 373-399 58-90 (295)
439 COG1797 CobB Cobyrinic acid a, 25.7 76 0.0017 31.8 3.5 32 10-41 3-35 (451)
440 COG3516 Predicted component of 25.6 2.3E+02 0.005 24.2 5.8 56 414-479 93-150 (169)
441 PRK12724 flagellar biosynthesi 25.6 2.5E+02 0.0053 28.5 7.1 40 8-47 224-264 (432)
442 PRK06988 putative formyltransf 25.5 6.1E+02 0.013 24.4 9.9 32 8-44 3-34 (312)
443 COG2120 Uncharacterized protei 25.4 1.3E+02 0.0027 27.8 4.8 39 4-42 7-45 (237)
444 COG2210 Peroxiredoxin family p 25.4 1.4E+02 0.003 24.8 4.4 33 11-43 7-39 (137)
445 TIGR00696 wecB_tagA_cpsF bacte 25.4 4.5E+02 0.0098 22.9 8.4 89 24-144 37-130 (177)
446 cd01075 NAD_bind_Leu_Phe_Val_D 25.4 1E+02 0.0022 27.4 4.2 33 5-42 26-58 (200)
447 PRK12829 short chain dehydroge 25.4 1.2E+02 0.0027 27.8 4.9 36 5-44 9-44 (264)
448 COG3349 Uncharacterized conser 25.3 69 0.0015 32.8 3.2 32 8-44 1-32 (485)
449 PRK06718 precorrin-2 dehydroge 25.0 1.1E+02 0.0023 27.4 4.2 38 7-50 10-47 (202)
450 cd01141 TroA_d Periplasmic bin 24.9 1.2E+02 0.0025 26.4 4.4 31 116-146 68-99 (186)
451 cd01147 HemV-2 Metal binding p 24.9 1.9E+02 0.0041 26.6 6.1 72 361-437 65-141 (262)
452 PRK08181 transposase; Validate 24.9 88 0.0019 29.4 3.7 45 6-50 105-149 (269)
453 PRK05541 adenylylsulfate kinas 24.9 1.7E+02 0.0038 25.0 5.5 43 1-43 1-43 (176)
454 COG2084 MmsB 3-hydroxyisobutyr 24.7 1E+02 0.0022 29.2 4.1 32 8-44 1-32 (286)
455 TIGR00147 lipid kinase, YegS/R 24.6 3E+02 0.0065 26.0 7.5 27 373-399 59-91 (293)
456 PF02780 Transketolase_C: Tran 24.6 1.1E+02 0.0023 24.7 3.8 36 6-43 8-43 (124)
457 TIGR02114 coaB_strep phosphopa 24.5 86 0.0019 28.6 3.6 20 24-43 28-47 (227)
458 PRK13982 bifunctional SbtC-lik 24.3 94 0.002 31.9 4.0 43 7-50 70-112 (475)
459 PRK11617 endonuclease V; Provi 24.1 51 0.0011 29.9 1.9 41 99-145 85-131 (224)
460 PRK00771 signal recognition pa 24.1 1.8E+02 0.0039 29.6 6.0 42 7-48 95-136 (437)
461 cd08194 Fe-ADH6 Iron-containin 24.1 1.2E+02 0.0026 30.1 4.8 33 292-326 24-56 (375)
462 cd03412 CbiK_N Anaerobic cobal 24.0 1.3E+02 0.0029 24.5 4.2 36 293-328 2-39 (127)
463 PRK04885 ppnK inorganic polyph 24.0 63 0.0014 30.3 2.5 28 370-399 36-69 (265)
464 PF03698 UPF0180: Uncharacteri 23.8 69 0.0015 23.8 2.2 22 24-45 10-31 (80)
465 TIGR01449 PGP_bact 2-phosphogl 23.7 2.9E+02 0.0063 24.3 6.9 27 119-147 160-186 (213)
466 PF00070 Pyr_redox: Pyridine n 23.5 1.2E+02 0.0027 22.0 3.7 23 23-45 10-32 (80)
467 COG2230 Cfa Cyclopropane fatty 23.4 35 0.00076 32.2 0.8 42 378-420 80-124 (283)
468 PLN02929 NADH kinase 23.3 1.3E+02 0.0028 28.9 4.5 64 370-439 65-137 (301)
469 PRK10037 cell division protein 23.3 1.2E+02 0.0025 28.0 4.3 37 10-46 4-41 (250)
470 PRK13869 plasmid-partitioning 23.3 1.4E+02 0.003 30.0 5.1 40 7-46 120-161 (405)
471 PLN03064 alpha,alpha-trehalose 23.3 3.2E+02 0.007 30.8 8.1 106 359-480 446-563 (934)
472 PRK03372 ppnK inorganic polyph 23.1 1.5E+02 0.0032 28.5 5.0 51 372-438 73-127 (306)
473 PF10163 EnY2: Transcription f 23.1 1.8E+02 0.004 21.8 4.5 52 425-481 15-66 (86)
474 cd02040 NifH NifH gene encodes 23.1 1.4E+02 0.003 27.8 4.8 38 9-46 3-40 (270)
475 COG2085 Predicted dinucleotide 23.0 1.2E+02 0.0027 27.2 4.0 20 25-44 14-33 (211)
476 PRK07236 hypothetical protein; 23.0 1.5E+02 0.0032 29.4 5.3 36 3-43 2-37 (386)
477 COG1748 LYS9 Saccharopine dehy 23.0 4.7E+02 0.01 26.1 8.5 40 8-52 2-43 (389)
478 TIGR03026 NDP-sugDHase nucleot 23.0 1.1E+02 0.0024 30.8 4.3 32 8-44 1-32 (411)
479 PF05014 Nuc_deoxyrib_tr: Nucl 22.9 96 0.0021 24.5 3.2 39 365-403 57-101 (113)
480 PF06418 CTP_synth_N: CTP synt 22.9 91 0.002 29.1 3.3 39 8-46 1-42 (276)
481 PRK08125 bifunctional UDP-gluc 22.9 8.8E+02 0.019 26.1 11.4 31 8-43 1-32 (660)
482 PF10657 RC-P840_PscD: Photosy 22.9 1.4E+02 0.0031 23.9 3.8 42 5-46 44-85 (144)
483 PF03720 UDPG_MGDP_dh_C: UDP-g 22.9 1E+02 0.0022 24.2 3.2 22 22-43 17-38 (106)
484 TIGR03453 partition_RepA plasm 22.8 1.3E+02 0.0028 30.0 4.7 41 6-46 102-144 (387)
485 PF01656 CbiA: CobQ/CobB/MinD/ 22.7 1.3E+02 0.0028 26.1 4.3 120 12-148 4-124 (195)
486 PF14626 RNase_Zc3h12a_2: Zc3h 22.7 79 0.0017 25.4 2.4 26 21-46 9-34 (122)
487 PRK05579 bifunctional phosphop 22.6 1.7E+02 0.0036 29.4 5.4 22 23-44 216-237 (399)
488 PRK07454 short chain dehydroge 22.6 1.7E+02 0.0036 26.5 5.2 34 7-43 5-38 (241)
489 PRK12767 carbamoyl phosphate s 22.5 3.6E+02 0.0078 25.8 7.7 32 8-45 2-35 (326)
490 COG1348 NifH Nitrogenase subun 22.4 1.9E+02 0.0042 26.6 5.1 42 8-49 2-43 (278)
491 PRK07952 DNA replication prote 22.3 1.1E+02 0.0024 28.3 3.8 41 9-49 101-141 (244)
492 COG0783 Dps DNA-binding ferrit 22.3 2.1E+02 0.0045 24.4 5.1 39 433-474 49-87 (156)
493 PRK04761 ppnK inorganic polyph 22.2 74 0.0016 29.5 2.6 28 370-399 26-57 (246)
494 KOG3584 cAMP response element 22.0 2.7E+02 0.0058 26.2 6.0 46 424-481 284-340 (348)
495 PRK01231 ppnK inorganic polyph 22.0 1.9E+02 0.0041 27.6 5.4 51 373-439 64-118 (295)
496 PHA02519 plasmid partition pro 21.9 1.6E+02 0.0036 29.3 5.2 39 7-45 105-146 (387)
497 COG0151 PurD Phosphoribosylami 21.9 3.2E+02 0.007 27.4 7.0 34 8-46 1-34 (428)
498 COG0205 PfkA 6-phosphofructoki 21.9 2.7E+02 0.0059 27.3 6.5 37 7-43 2-40 (347)
499 cd07062 Peptidase_S66_mccF_lik 21.9 1.7E+02 0.0037 28.1 5.2 76 303-400 48-125 (308)
500 PF07991 IlvN: Acetohydroxy ac 21.7 78 0.0017 27.2 2.4 36 6-46 3-38 (165)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.9e-66 Score=513.17 Aligned_cols=446 Identities=34% Similarity=0.554 Sum_probs=345.9
Q ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 1 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
||...++.||+++|++++||++|++.||+.|+.+|+.||+++++.+..+. . ...++++|..+|+++|.+..
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-------~~~~~i~~~~ip~glp~~~~ 71 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-------DDFTDFQFVTIPESLPESDF 71 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-------cCCCCeEEEeCCCCCCcccc
Confidence 78667778999999999999999999999999999999999998764211 0 11135999999988886422
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhh
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLP 160 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (483)
.. .....++..+...+.+.+.++++++.. +.. .+++|||+|.+.+| +..+|+++|||++.++++++..+..+.++.
T Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~-~~~-~p~~cVI~D~f~~W-a~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 72 KN-LGPIEFLHKLNKECQVSFKDCLGQLVL-QQG-NEIACVVYDEFMYF-AEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred cc-cCHHHHHHHHHHHhHHHHHHHHHHHHh-ccC-CCcEEEEECCcchH-HHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 12 223345555555667778888877531 111 46799999999999 999999999999999999998876665543
Q ss_pred hhhhCCC-CCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHH
Q 011531 161 KLVEDGH-IPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVS 238 (483)
Q Consensus 161 ~~~~~~~-~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~ 238 (483)
....... .|..... .+....+|+++. ++..+++..... ........+... ..+.+++.+++||| +||+..++
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~iPg~~~-~~~~dlp~~~~~---~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~ 221 (451)
T PLN02410 148 KLYANNVLAPLKEPK-GQQNELVPEFHP-LRCKDFPVSHWA---SLESIMELYRNT-VDKRTASSVIINTASCLESSSLS 221 (451)
T ss_pred HHHhccCCCCccccc-cCccccCCCCCC-CChHHCcchhcC---CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHH
Confidence 3322211 2322210 011224677766 666666643222 112222322222 23467889999999 99999999
Q ss_pred HHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHH
Q 011531 239 LLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGL 317 (483)
Q Consensus 239 ~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~ 317 (483)
..+... +++++|||++..... +...++.+.+|.+||+++++++||||||||....+.+++.+++.+|
T Consensus 222 ~l~~~~~~~v~~vGpl~~~~~~------------~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL 289 (451)
T PLN02410 222 RLQQQLQIPVYPIGPLHLVASA------------PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGL 289 (451)
T ss_pred HHHhccCCCEEEecccccccCC------------CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHH
Confidence 987755 689999999854210 1122233456899999998899999999999999999999999999
Q ss_pred HhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 318 VNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 318 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
+.++.+|||+++.+...+..+...+|++|.+|.++| +++++|+||.+||+|+++++||||||+||+.||+++|||||++
T Consensus 290 e~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~-g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 290 DSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGR-GYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred HhcCCCeEEEEccCcccccchhhcCChhHHHhccCC-eEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 999999999998532110012224789999999888 9999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011531 398 PQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 398 P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l 476 (483)
|+++||+.||+++++.+|+|+.+.+.+++++|+++|+++|. +++++||++|+++++.+++++++||++++++++|+++|
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~ 448 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFM 448 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999998867999999877899999999999997 34678999999999999999999999999999999998
Q ss_pred HH
Q 011531 477 RL 478 (483)
Q Consensus 477 ~~ 478 (483)
+.
T Consensus 449 ~~ 450 (451)
T PLN02410 449 RT 450 (451)
T ss_pred Hh
Confidence 64
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.6e-65 Score=513.40 Aligned_cols=462 Identities=28% Similarity=0.487 Sum_probs=357.4
Q ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhcccccc---ccCCCCCeEEEeCCCCCCC
Q 011531 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITS---FCNRFPNFQFRSIPSGLPA 77 (483)
Q Consensus 1 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~f~~~p~~l~~ 77 (483)
|.+.+-+.||+++|+|++||++|++.||+.|+.+|..||+++++.+..++.+...... .......+.|..+|+++|.
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 8888899999999999999999999999999999999999999877665542110000 0011224778778888876
Q ss_pred CcccCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHH
Q 011531 78 NVIRSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYF 157 (483)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (483)
+.. ...+...++..+...+.+.+.++++.+.. .+ .+++|||+|.+..| +..+|+++|||++.++++++..+..+.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~-~pv~ciV~D~~~~w-a~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 81 DDP-RRQDLDLYLPQLELVGKREIPNLVKRYAE--QG-RPVSCLINNPFIPW-VCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred Ccc-cccCHHHHHHHHHHhhhHHHHHHHHHHhc--cC-CCceEEEECCcchH-HHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 532 22344455565655677888888877531 11 33599999999999 999999999999999999999888776
Q ss_pred hhhhhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHH
Q 011531 158 LLPKLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPV 236 (483)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~ 236 (483)
++.. .+.|.......+....+|+++. ++..+++.++.. ....+...+.+......+.+++.+++||| +||+..
T Consensus 156 ~~~~----~~~~~~~~~~~~~~~~iPglp~-l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 229 (480)
T PLN02555 156 HYYH----GLVPFPTETEPEIDVQLPCMPL-LKYDEIPSFLHP-SSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEI 229 (480)
T ss_pred HHhh----cCCCcccccCCCceeecCCCCC-cCHhhCcccccC-CCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 6532 2223222111111224688876 777888865543 22334445556666666678889999999 999999
Q ss_pred HHHHhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHH
Q 011531 237 VSLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHG 316 (483)
Q Consensus 237 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a 316 (483)
++.++...| ++.|||+......... ......|+.+++|.+||+++++++||||||||+...+.+++.+++.+
T Consensus 230 ~~~l~~~~~-v~~iGPl~~~~~~~~~-------~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 230 IDYMSKLCP-IKPVGPLFKMAKTPNS-------DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred HHHHhhCCC-EEEeCcccCccccccc-------cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 988876555 9999999753221000 00112244456799999998888999999999999999999999999
Q ss_pred HHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceec
Q 011531 317 LVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMIC 396 (483)
Q Consensus 317 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~ 396 (483)
++.++.+|||+++............+|+++.++.++| +++++|+||.+||+|++|++||||||+||+.||+++|||||+
T Consensus 302 l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred HHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCc-eEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 9999999999997431100001124778888888787 999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhccceecC------CCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 011531 397 WPQFSDQLVNSRCVSEVWKIGFDMK------DTCDGSIIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNL 469 (483)
Q Consensus 397 ~P~~~DQ~~na~~v~~~~G~G~~l~------~~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 469 (483)
+|+++||+.||+++++.+|+|+.+. +.++.++|.++|+++|. ++++++|+||++|+++.++++++||++++++
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l 460 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNF 460 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999988789999992 35799999999999996 5678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 011531 470 DGLIEDIRLMARK 482 (483)
Q Consensus 470 ~~l~~~l~~~~~~ 482 (483)
++||++|......
T Consensus 461 ~~~v~~i~~~~~~ 473 (480)
T PLN02555 461 QEFVDKLVRKSVE 473 (480)
T ss_pred HHHHHHHHhccce
Confidence 9999999876543
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-64 Score=506.59 Aligned_cols=437 Identities=27% Similarity=0.436 Sum_probs=338.5
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGL 84 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~ 84 (483)
..+.||+++|+|++||++|++.||+.|+.+|++||+++++.+.+++.... ...++++|+.+|++++.+. ..
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~------~~~~~i~~v~lp~g~~~~~---~~ 74 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL------DPKLGITFMSISDGQDDDP---PR 74 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc------CCCCCEEEEECCCCCCCCc---cc
Confidence 34579999999999999999999999999999999999988766654431 1123599999998775422 12
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhh
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVE 164 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (483)
++..+...+...+.+.++++++++.. . .+++|||+|.+..| +..+|+++|||++.++++++..+..+.+.+....
T Consensus 75 ~~~~l~~a~~~~~~~~l~~ll~~l~~---~-~pv~cvI~D~~~~w-~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~ 149 (448)
T PLN02562 75 DFFSIENSMENTMPPQLERLLHKLDE---D-GEVACMVVDLLASW-AIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVR 149 (448)
T ss_pred cHHHHHHHHHHhchHHHHHHHHHhcC---C-CCcEEEEECCccHh-HHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhh
Confidence 33344444444577788888887631 1 23589999999999 9999999999999999998877766555443222
Q ss_pred CCCCCCCCC-CCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHHHh-
Q 011531 165 DGHIPFPDE-NMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSLLG- 241 (483)
Q Consensus 165 ~~~~p~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~~~- 241 (483)
.++.+.... ...+....+|+++. ++..+++.++.. ..........+.+......+++.+++||| +||+..++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 227 (448)
T PLN02562 150 TGLISETGCPRQLEKICVLPEQPL-LSTEDLPWLIGT-PKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQA 227 (448)
T ss_pred ccccccccccccccccccCCCCCC-CChhhCcchhcC-CCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHh
Confidence 222222110 11112235677766 677777765543 21123335556666666678889999999 99998877553
Q ss_pred ----hccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCccc-CCCHHHHHHHHHH
Q 011531 242 ----SHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLV-GLTREQMSELWHG 316 (483)
Q Consensus 242 ----~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~-~~~~~~~~~~~~a 316 (483)
+..|+++.|||++...... ......++.+.+|.+||+++++++||||||||+. ..+.+++++++.+
T Consensus 228 ~~~~~~~~~v~~iGpl~~~~~~~---------~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~ 298 (448)
T PLN02562 228 SYNNGQNPQILQIGPLHNQEATT---------ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALA 298 (448)
T ss_pred hhccccCCCEEEecCcccccccc---------cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHH
Confidence 3457899999998643110 0011123345668899999888899999999987 5788999999999
Q ss_pred HHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceec
Q 011531 317 LVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMIC 396 (483)
Q Consensus 317 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~ 396 (483)
|+.++.+|||+++.. +.+.+++++.++.++| +++++|+||.+||+|+++++||||||+||++||+++|||||+
T Consensus 299 l~~~g~~fiW~~~~~------~~~~l~~~~~~~~~~~-~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 371 (448)
T PLN02562 299 LEASGRPFIWVLNPV------WREGLPPGYVERVSKQ-GKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLC 371 (448)
T ss_pred HHHCCCCEEEEEcCC------chhhCCHHHHHHhccC-EEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEe
Confidence 999999999999752 2224778888888887 999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011531 397 WPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 397 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l 476 (483)
+|+++||+.||+++++.+|+|+.+ ..++.++|.++|+++|.+ ++||+||++++++++++ .+||||++++++|+++|
T Consensus 372 ~P~~~DQ~~na~~~~~~~g~g~~~-~~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 372 YPVAGDQFVNCAYIVDVWKIGVRI-SGFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred CCcccchHHHHHHHHHHhCceeEe-CCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 999999999999998767999888 568999999999999998 89999999999999887 66799999999999987
Q ss_pred H
Q 011531 477 R 477 (483)
Q Consensus 477 ~ 477 (483)
+
T Consensus 448 ~ 448 (448)
T PLN02562 448 K 448 (448)
T ss_pred C
Confidence 3
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.9e-64 Score=498.59 Aligned_cols=437 Identities=26% Similarity=0.485 Sum_probs=338.0
Q ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCC
Q 011531 4 SHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSG 83 (483)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~ 83 (483)
++++.|++++|++++||++|++.||+.|+.+|+.||+++++.+.+++... ..++++|..+|+++|.+..+..
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~--------~~~~i~~~~ipdglp~~~~~~~ 73 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD--------PSSPISIATISDGYDQGGFSSA 73 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC--------CCCCEEEEEcCCCCCCcccccc
Confidence 35668999999999999999999999999999999999998776655321 1135999999998886422223
Q ss_pred CCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCc-cEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhh
Q 011531 84 LTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSP-TCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKL 162 (483)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 162 (483)
.+...++..+...+.+.++++++.+.. . .+| ||||+|.+.+| +..+|+++|||++.++++++.....+.+. ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~Pv~cvV~D~f~~W-a~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~ 147 (449)
T PLN02173 74 GSVPEYLQNFKTFGSKTVADIIRKHQS--T--DNPITCIVYDSFMPW-ALDLAREFGLAAAPFFTQSCAVNYINYLS-YI 147 (449)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHhhc--c--CCCceEEEECCcchh-HHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh
Confidence 345566666666678888888887531 1 245 99999999999 99999999999999999887766544321 10
Q ss_pred hhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHHHh
Q 011531 163 VEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSLLG 241 (483)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~~~ 241 (483)
.. .. ....+|+++. ++..+++.++.. ....+.....+......+.+++.+++||| ++|+..++..+
T Consensus 148 -~~-------~~---~~~~~pg~p~-l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 214 (449)
T PLN02173 148 -NN-------GS---LTLPIKDLPL-LELQDLPTFVTP-TGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLS 214 (449)
T ss_pred -cc-------CC---ccCCCCCCCC-CChhhCChhhcC-CCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHH
Confidence 00 00 1112466665 667777765543 22233344555566666788899999999 99999998887
Q ss_pred hccCcceeeCCcccccccccccCCCCCCCCCCCCc--ccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHh
Q 011531 242 SHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQ--TEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVN 319 (483)
Q Consensus 242 ~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~ 319 (483)
.. ++++.|||+++...... +..+ ........| +.+++|.+||+++++++||||||||+...+.+++.+++.+|
T Consensus 215 ~~-~~v~~VGPl~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL-- 289 (449)
T PLN02173 215 KV-CPVLTIGPTVPSMYLDQ-QIKS-DNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI-- 289 (449)
T ss_pred hc-CCeeEEcccCchhhccc-cccc-cccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--
Confidence 65 46999999974311000 0000 000001222 23456999999998999999999999999999999999999
Q ss_pred CCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceecccc
Q 011531 320 RGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ 399 (483)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 399 (483)
++.+|+|+++.+. ...+|+++.++..++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 290 s~~~flWvvr~~~------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~ 363 (449)
T PLN02173 290 SNFSYLWVVRASE------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQ 363 (449)
T ss_pred cCCCEEEEEeccc------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCc
Confidence 5778999997531 1247788888774444999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHhhccceecC-C----CCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011531 400 FSDQLVNSRCVSEVWKIGFDMK-D----TCDGSIIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLI 473 (483)
Q Consensus 400 ~~DQ~~na~~v~~~~G~G~~l~-~----~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~ 473 (483)
++||+.||+++++.+|+|+.+. . .++.++|.++|+++|. ++++.+|++|++++++.++++++||++++++++|+
T Consensus 364 ~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v 443 (449)
T PLN02173 364 WTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFV 443 (449)
T ss_pred hhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999988779999985 2 2699999999999997 45688999999999999999999999999999999
Q ss_pred HHHHH
Q 011531 474 EDIRL 478 (483)
Q Consensus 474 ~~l~~ 478 (483)
+++..
T Consensus 444 ~~~~~ 448 (449)
T PLN02173 444 SKIQI 448 (449)
T ss_pred HHhcc
Confidence 99864
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.8e-63 Score=493.24 Aligned_cols=448 Identities=23% Similarity=0.422 Sum_probs=332.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCC--cEEEEEeCCCchh-hhhhccccccccCCCCCeEEEeCCCCCCCCcccC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSAN--FQVTFVNTDHNHD-LLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRS 82 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~ 82 (483)
++.|++++|++++||++|++.||+.|+.+| ..||+++++.+.+ .+..... ......++++|..+|+.........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK--SIASSQPFVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh--hccCCCCCeEEEEeCCCCCCCcccc
Confidence 357999999999999999999999999998 9999999987652 2211110 0001223699999995432111001
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhhhh-cCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhh
Q 011531 83 GLTAKDVFDAMKAVSKPAFRDLLISLREET-EQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPK 161 (483)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (483)
..+....+......+.+.+++.++++.+.. .++.+++|||+|.+.+| +..+|+++|||++.++++++..+..+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w-~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLP-MIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchH-HHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 123343333333345443444443332111 11023499999999999 9999999999999999999887776655543
Q ss_pred hhhC-CCCCCCCCCCCCCccccCCC-CCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHH
Q 011531 162 LVED-GHIPFPDENMEKPVAGIPGF-ENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVS 238 (483)
Q Consensus 162 ~~~~-~~~p~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~ 238 (483)
...+ ...+.... +....+|++ +. ++..+++.++.. ... ...+......+.+++.+++||| ++|++.++
T Consensus 159 ~~~~~~~~~~~~~---~~~~~vPgl~~~-l~~~dlp~~~~~-~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 159 RHSKDTSVFVRNS---EEMLSIPGFVNP-VPANVLPSALFV-EDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred ccccccccCcCCC---CCeEECCCCCCC-CChHHCcchhcC-Ccc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 2111 00111111 122357887 45 777788765533 221 3333444455678999999999 99999888
Q ss_pred HHh--hccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHH
Q 011531 239 LLG--SHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHG 316 (483)
Q Consensus 239 ~~~--~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a 316 (483)
..+ +..|+++.|||++..... ..+...+..++++.+||+++++++||||||||....+.+++++++.+
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~----------~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~ 299 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQ----------PHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHG 299 (468)
T ss_pred HHHhccCCCcEEEecCCcccccC----------CCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHH
Confidence 874 356889999999864321 11110011235799999998889999999999999999999999999
Q ss_pred HHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceec
Q 011531 317 LVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMIC 396 (483)
Q Consensus 317 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~ 396 (483)
|+.++++|||+++.+... ..+.+|++|+++.++| +++++|+||.+||+|+++++|||||||||+.||+++|||||+
T Consensus 300 l~~~~~~flW~~r~~~~~---~~~~lp~~f~er~~~~-g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~ 375 (468)
T PLN02207 300 LELCQYRFLWSLRTEEVT---NDDLLPEGFLDRVSGR-GMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVT 375 (468)
T ss_pred HHHCCCcEEEEEeCCCcc---ccccCCHHHHhhcCCC-eEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEe
Confidence 999999999999853211 1224788999888887 999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhccceecC--------CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011531 397 WPQFSDQLVNSRCVSEVWKIGFDMK--------DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRN 468 (483)
Q Consensus 397 ~P~~~DQ~~na~~v~~~~G~G~~l~--------~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 468 (483)
+|+++||+.||+++++.+|+|+.+. +..+.++|.++|+++|.+++++||+||+++++++++++.+|||++++
T Consensus 376 ~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~ 455 (468)
T PLN02207 376 WPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAA 455 (468)
T ss_pred cCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999998877789999662 23599999999999998445899999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 011531 469 LDGLIEDIRLM 479 (483)
Q Consensus 469 ~~~l~~~l~~~ 479 (483)
+++|++++..-
T Consensus 456 l~~~v~~~~~~ 466 (468)
T PLN02207 456 IEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHhc
Confidence 99999999753
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.9e-63 Score=496.52 Aligned_cols=439 Identities=26% Similarity=0.459 Sum_probs=331.8
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHH--HHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 3 RSHVNPHVVLLPYPLQGHIKPMMSLAEL--LGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
++..+.||+++|+|++||++|++.||++ |++||+.||+++++.+.+++ +..+ ...+.+++..+|++++.+..
T Consensus 4 ~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~-~~~~-----~~~~~~~~~~~~~glp~~~~ 77 (456)
T PLN02210 4 SEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLL-STVE-----KPRRPVDLVFFSDGLPKDDP 77 (456)
T ss_pred cCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhh-cccc-----CCCCceEEEECCCCCCCCcc
Confidence 4556789999999999999999999999 56999999999998876655 2221 12335888888877776531
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhh
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLP 160 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (483)
.+...++..+.+.+.+.+.++++. .+||+||+|.+.+| +..+|+++|||++.+++.++..+..+.++.
T Consensus 78 ---~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vI~D~~~~w-~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 78 ---RAPETLLKSLNKVGAKNLSKIIEE--------KRYSCIISSPFTPW-VPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred ---cCHHHHHHHHHHhhhHHHHHHHhc--------CCCcEEEECCcchh-HHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 233445555554455556666654 46999999999999 999999999999999998888777655432
Q ss_pred hhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHH-HHhhhcccccEEEEecC-CCCHHHHH
Q 011531 161 KLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFI-GETFAMTRASALILNTF-EIEAPVVS 238 (483)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~-~l~~~~~~ 238 (483)
.. ..+.......+....+|+++. ++..+++..+.. . .+....... .......+++.+++||| ++|+..++
T Consensus 146 ~~----~~~~~~~~~~~~~~~~Pgl~~-~~~~dl~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 217 (456)
T PLN02210 146 MK----TNSFPDLEDLNQTVELPALPL-LEVRDLPSFMLP-S--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIE 217 (456)
T ss_pred hc----cCCCCcccccCCeeeCCCCCC-CChhhCChhhhc-C--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHH
Confidence 21 111111110011123677765 666777654433 1 122222222 33334467789999999 99999999
Q ss_pred HHhhccCcceeeCCccccc--ccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHH
Q 011531 239 LLGSHFTKIYTIGPLHELR--KSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHG 316 (483)
Q Consensus 239 ~~~~~~~~~~~vG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a 316 (483)
.++.. +++++|||+.+.. .....+ +........|+.+++|.+|++++++++||||||||....+.+++++++.+
T Consensus 218 ~l~~~-~~v~~VGPl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~ 293 (456)
T PLN02210 218 SMADL-KPVIPIGPLVSPFLLGDDEEE---TLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKA 293 (456)
T ss_pred HHhhc-CCEEEEcccCchhhcCccccc---ccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 88764 6799999997421 100000 00000112355567899999988889999999999999999999999999
Q ss_pred HHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhc-CCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCcee
Q 011531 317 LVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGT-EERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMI 395 (483)
Q Consensus 317 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l 395 (483)
|+.++.+|||+++.+... ..+..+.++. +++ +++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 294 l~~~~~~flw~~~~~~~~------~~~~~~~~~~~~~~-g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v 366 (456)
T PLN02210 294 LKNRGVPFLWVIRPKEKA------QNVQVLQEMVKEGQ-GVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVV 366 (456)
T ss_pred HHhCCCCEEEEEeCCccc------cchhhHHhhccCCC-eEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEE
Confidence 999999999999753111 1234555555 355 88899999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhccceecC-----CCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 011531 396 CWPQFSDQLVNSRCVSEVWKIGFDMK-----DTCDGSIIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNL 469 (483)
Q Consensus 396 ~~P~~~DQ~~na~~v~~~~G~G~~l~-----~~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 469 (483)
++|+++||+.||+++++.+|+|+.+. +.+++++|+++|+++|. ++++++|+||++|++.+++++++|||+++++
T Consensus 367 ~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l 446 (456)
T PLN02210 367 AYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNL 446 (456)
T ss_pred ecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999986689999985 25899999999999997 4467899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011531 470 DGLIEDIRL 478 (483)
Q Consensus 470 ~~l~~~l~~ 478 (483)
++|+++|+.
T Consensus 447 ~~~v~~~~~ 455 (456)
T PLN02210 447 DLFISDITI 455 (456)
T ss_pred HHHHHHHhc
Confidence 999999874
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.1e-63 Score=495.63 Aligned_cols=455 Identities=26% Similarity=0.418 Sum_probs=337.2
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCC----CCCCC
Q 011531 3 RSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPS----GLPAN 78 (483)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~----~l~~~ 78 (483)
+..+++|++++|||++||++|++.||+.|+.+|+.||+++++.+.+++.... ...+++++..+|- ++|.+
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~------~~~~~i~~~~lp~P~~~~lPdG 78 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL------SKHPSIETLVLPFPSHPSIPSG 78 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc------ccCCCeeEEeCCCCCcCCCCCC
Confidence 4567799999999999999999999999999999999999998887764432 1123577776541 34443
Q ss_pred cccCCC---CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHH
Q 011531 79 VIRSGL---TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWI 155 (483)
Q Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~ 155 (483)
...... +....+......+.+.+.+++.... .+++|||+|.+.+| +..+|+++|||++.+++++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~------~~p~cvI~D~f~~W-a~dVA~e~GIP~~~F~t~sA~~~~~ 151 (477)
T PLN02863 79 VENVKDLPPSGFPLMIHALGELYAPLLSWFRSHP------SPPVAIISDMFLGW-TQNLACQLGIRRFVFSPSGAMALSI 151 (477)
T ss_pred CcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCC------CCCeEEEEcCchHh-HHHHHHHcCCCEEEEeccCHHHHHH
Confidence 211111 1111222222234455555555431 46899999999999 9999999999999999999998888
Q ss_pred HHhhhhhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCH
Q 011531 156 YFLLPKLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEA 234 (483)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~ 234 (483)
+.++....+....+ ...........+|+++. ++..+++.++.. ....+.....+.........++.+++||| ++|+
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~~~iPg~~~-~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~ 228 (477)
T PLN02863 152 MYSLWREMPTKINP-DDQNEILSFSKIPNCPK-YPWWQISSLYRS-YVEGDPAWEFIKDSFRANIASWGLVVNSFTELEG 228 (477)
T ss_pred HHHHhhcccccccc-cccccccccCCCCCCCC-cChHhCchhhhc-cCccchHHHHHHHHHhhhccCCEEEEecHHHHHH
Confidence 77654311100000 00000111234677776 777777765543 22223334444454444566778999999 9999
Q ss_pred HHHHHHhhcc--CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHH
Q 011531 235 PVVSLLGSHF--TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSE 312 (483)
Q Consensus 235 ~~~~~~~~~~--~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~ 312 (483)
..++..+..+ ++++.|||+.+...... +. .......+..+++|.+||+.+++++||||||||....+.+++.+
T Consensus 229 ~~~~~~~~~~~~~~v~~IGPL~~~~~~~~-~~----~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~e 303 (477)
T PLN02863 229 IYLEHLKKELGHDRVWAVGPILPLSGEKS-GL----MERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEA 303 (477)
T ss_pred HHHHHHHhhcCCCCeEEeCCCcccccccc-cc----cccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHH
Confidence 9999988754 67999999975321000 00 00000111124579999999888999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCC
Q 011531 313 LWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGV 392 (483)
Q Consensus 313 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~Gv 392 (483)
++.+|+.++++|||+++.+... ......+|+++.++..++|+++.+|+||.+||+|++|++|||||||||++||+++||
T Consensus 304 la~gL~~~~~~flw~~~~~~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~Gv 382 (477)
T PLN02863 304 LASGLEKSGVHFIWCVKEPVNE-ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGV 382 (477)
T ss_pred HHHHHHhCCCcEEEEECCCccc-ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCC
Confidence 9999999999999999753211 011124788888877666578889999999999999999999999999999999999
Q ss_pred ceeccccccchhHHHHHHHHhhccceecC----CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011531 393 PMICWPQFSDQLVNSRCVSEVWKIGFDMK----DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRN 468 (483)
Q Consensus 393 P~l~~P~~~DQ~~na~~v~~~~G~G~~l~----~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 468 (483)
|||++|+++||+.||+++++++|+|+.+. ...+.+++.++|.++|. ++++||+||+++++++++++.+||+++++
T Consensus 383 P~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~-~~~~~r~~a~~l~e~a~~Av~~gGSS~~~ 461 (477)
T PLN02863 383 PMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS-ENQVERERAKELRRAALDAIKERGSSVKD 461 (477)
T ss_pred CEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 99999999999999999877789999984 24589999999999995 23899999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 011531 469 LDGLIEDIRLMA 480 (483)
Q Consensus 469 ~~~l~~~l~~~~ 480 (483)
+++|+++|....
T Consensus 462 l~~~v~~i~~~~ 473 (477)
T PLN02863 462 LDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHhc
Confidence 999999998653
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.1e-62 Score=491.24 Aligned_cols=438 Identities=34% Similarity=0.571 Sum_probs=337.2
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 3 RSHVNPHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
+..++.||+++|+|++||++|++.||++|+++ ||.||+++++.+.+++.... ..++++|+.+|++++....
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-------~~~gi~fv~lp~~~p~~~~ 78 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-------KPDNIRFATIPNVIPSELV 78 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-------CCCCEEEEECCCCCCCccc
Confidence 45678999999999999999999999999999 99999999988877665531 1236999999976665432
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhh
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLP 160 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (483)
...+...++..+...+.+.++++++++. .++||||+|.+++| +..+|+++|||++.++++++..+..+.+++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~VI~D~~~~w-a~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 79 -RAADFPGFLEAVMTKMEAPFEQLLDRLE------PPVTAIVADTYLFW-AVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred -cccCHHHHHHHHHHHhHHHHHHHHHhcC------CCcEEEEECCccHH-HHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 2234555555555456677777777653 36899999999999 999999999999999999987766665554
Q ss_pred hhhhCCCCCCCCCC-CCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHH
Q 011531 161 KLVEDGHIPFPDEN-MEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVS 238 (483)
Q Consensus 161 ~~~~~~~~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~ 238 (483)
.....+..|..... ......++|++.. ++..+++.++.. . .....+.+......+.+++.+++||| +||+..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~-~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 226 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS-TRLSDLPPIFHG-N--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAID 226 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC-CChHHCchhhcC-C--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHH
Confidence 32222222322211 1112335677765 666677655443 1 22334455555555567789999999 99999999
Q ss_pred HHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHH
Q 011531 239 LLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGL 317 (483)
Q Consensus 239 ~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~ 317 (483)
.++... ++++.|||+........ + .......+.+.++.+|++.+++++||||||||+...+.+++++++.+|
T Consensus 227 ~l~~~~~~~~~~iGP~~~~~~~~~-~------~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l 299 (459)
T PLN02448 227 ALKSKFPFPVYPIGPSIPYMELKD-N------SSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGL 299 (459)
T ss_pred HHHhhcCCceEEecCcccccccCC-C------ccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHH
Confidence 887754 47999999975321100 0 000000112346889999888899999999999988899999999999
Q ss_pred HhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 318 VNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 318 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
+.++.+|||+++.+ ..++.++.++| +++++|+||.+||+|+++++||||||+||+.||+++|||||++
T Consensus 300 ~~~~~~~lw~~~~~-----------~~~~~~~~~~~-~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~ 367 (459)
T PLN02448 300 RDSGVRFLWVARGE-----------ASRLKEICGDM-GLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTF 367 (459)
T ss_pred HhCCCCEEEEEcCc-----------hhhHhHhccCC-EEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEec
Confidence 99999999988532 12344434455 9999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhccceecC------CCCCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011531 398 PQFSDQLVNSRCVSEVWKIGFDMK------DTCDGSIIEKLVRDLME---NKREEIMGSTDRVATMARDAVNEGGSSYRN 468 (483)
Q Consensus 398 P~~~DQ~~na~~v~~~~G~G~~l~------~~~~~~~l~~~i~~ll~---~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 468 (483)
|+++||+.||+++++.+|+|+.+. ...++++|+++|+++|. +++++||++|+++++++++++.+|||++++
T Consensus 368 P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~ 447 (459)
T PLN02448 368 PLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTN 447 (459)
T ss_pred cccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999987678888874 24799999999999997 356799999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011531 469 LDGLIEDIRL 478 (483)
Q Consensus 469 ~~~l~~~l~~ 478 (483)
+++|+++|+.
T Consensus 448 l~~~v~~~~~ 457 (459)
T PLN02448 448 LDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 9
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=7.5e-62 Score=483.75 Aligned_cols=437 Identities=27% Similarity=0.452 Sum_probs=332.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHh-CCcEEEEEeCCCc-hhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGS-ANFQVTFVNTDHN-HDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGL 84 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGH~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~ 84 (483)
+.|++++|++++||++|++.||+.|+. +|+.||+++++.+ .+.+... ....++++|+.++++++.+......
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~------~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN------HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc------CCCCCCEEEEEcCCCCCCccccccc
Confidence 569999999999999999999999996 7999999999754 2222111 0112359999999888765322233
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhh
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVE 164 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (483)
+....+......+.+.+.++++.+.. .+ .+++|||+|.+.+| +..+|+++|||++.++++++..+..+.++....
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~--~~-~pv~ciV~D~~~~w-a~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~- 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLN--GD-SPVTCLIYTILPNW-APKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN- 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhc--cC-CCceEEEECCccHh-HHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-
Confidence 45555666666788888888887531 11 24599999999999 999999999999999999998877765433210
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcc--cccEEEEecC-CCCHHHHHHHh
Q 011531 165 DGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMT--RASALILNTF-EIEAPVVSLLG 241 (483)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~-~l~~~~~~~~~ 241 (483)
.....+|+++. ++..+++.++.. ....+.....+........ .++.+++||| +||+..++..+
T Consensus 152 ------------~~~~~iPglp~-l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 152 ------------NSVFEFPNLPS-LEIRDLPSFLSP-SNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred ------------CCeeecCCCCC-CchHHCchhhcC-CCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 01224677766 677788766543 2222222333333333222 2468999999 99999998886
Q ss_pred hccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHhCC
Q 011531 242 SHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRG 321 (483)
Q Consensus 242 ~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~ 321 (483)
.. +++.|||+.+........ + ......++.++++.+||+++++++||||||||....+.+++++++.+|+.++
T Consensus 218 ~~--~v~~VGPL~~~~~~~~~~--~---~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~ 290 (455)
T PLN02152 218 NI--EMVAVGPLLPAEIFTGSE--S---GKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGK 290 (455)
T ss_pred cC--CEEEEcccCccccccccc--c---CccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcC
Confidence 52 699999997532100000 0 0000112334579999999888999999999999999999999999999999
Q ss_pred CeEEEEEcCCccC-C--CCC---CCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCcee
Q 011531 322 QRFLLVVRPDLIL-G--EPG---AAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMI 395 (483)
Q Consensus 322 ~~~i~~~~~~~~~-~--~~~---~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l 395 (483)
.+|||+++.+... . .+. ...++++|.++.+++ +++.+|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 291 ~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~-g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l 369 (455)
T PLN02152 291 RPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEV-GMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVV 369 (455)
T ss_pred CCeEEEEecCcccccccccccccccccchhHHHhccCC-eEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEE
Confidence 9999999753110 0 000 012467888888787 99999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhccceecC----CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011531 396 CWPQFSDQLVNSRCVSEVWKIGFDMK----DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDG 471 (483)
Q Consensus 396 ~~P~~~DQ~~na~~v~~~~G~G~~l~----~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 471 (483)
++|+++||+.||+++++.+|+|+.+. +..+.++|+++|+++|++++.+||++|++++++.+++..+||++++++++
T Consensus 370 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~ 449 (455)
T PLN02152 370 AFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEA 449 (455)
T ss_pred eccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999987667777763 24699999999999998766789999999999999999999999999999
Q ss_pred HHHHH
Q 011531 472 LIEDI 476 (483)
Q Consensus 472 l~~~l 476 (483)
||++|
T Consensus 450 li~~i 454 (455)
T PLN02152 450 FVKTL 454 (455)
T ss_pred HHHHh
Confidence 99987
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.2e-62 Score=486.66 Aligned_cols=433 Identities=30% Similarity=0.462 Sum_probs=331.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHH-hCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCC----CCCCCccc
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLG-SANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPS----GLPANVIR 81 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~----~l~~~~~~ 81 (483)
+.|++++|++++||++|++.||+.|+ ++|+.||+++++.+..++..... ..+++++..+|. ++++..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~------~~~~i~~~~lp~p~~~glp~~~-- 76 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL------NSTGVDIVGLPSPDISGLVDPS-- 76 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc------cCCCceEEECCCccccCCCCCC--
Confidence 57999999999999999999999998 78999999999877655433211 112588888884 333111
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhh
Q 011531 82 SGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPK 161 (483)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (483)
.+....+......+.+.++++++++. .+|++||+|.+.+| +..+|+++|||++.++++++..+..+.+.+.
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~l~~~~------~~p~cvV~D~f~~W-a~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 77 --AHVVTKIGVIMREAVPTLRSKIAEMH------QKPTALIVDLFGTD-ALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred --ccHHHHHHHHHHHhHHHHHHHHHhcC------CCCeEEEECCcchh-HHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 11222222233345567777776643 46899999999999 9999999999999999999887765554432
Q ss_pred hhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHHH
Q 011531 162 LVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSLL 240 (483)
Q Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~~ 240 (483)
...+...+.. .......+|+++. ++..+++..+.. ..+.....+......+.+++.+++||| +||+..++..
T Consensus 148 ~~~~~~~~~~---~~~~~~~iPg~~~-l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l 220 (481)
T PLN02992 148 LDKDIKEEHT---VQRKPLAMPGCEP-VRFEDTLDAYLV---PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSL 220 (481)
T ss_pred hccccccccc---cCCCCcccCCCCc-cCHHHhhHhhcC---CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 1111000000 0111234677766 666677643322 122334555555566678899999999 9999999887
Q ss_pred hhc-------cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHH
Q 011531 241 GSH-------FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSEL 313 (483)
Q Consensus 241 ~~~-------~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~ 313 (483)
+.. -++++.|||+..... . . ..+++|.+||+++++++||||||||...++.+++.++
T Consensus 221 ~~~~~~~~~~~~~v~~VGPl~~~~~-------------~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el 284 (481)
T PLN02992 221 QDPKLLGRVARVPVYPIGPLCRPIQ-------------S-S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTEL 284 (481)
T ss_pred hhccccccccCCceEEecCccCCcC-------------C-C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHH
Confidence 642 156999999974311 0 0 1245699999998889999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEcCCccCC--------------CCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeecc
Q 011531 314 WHGLVNRGQRFLLVVRPDLILG--------------EPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHG 379 (483)
Q Consensus 314 ~~a~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHg 379 (483)
+.+|+.++.+|||+++.+.... ......+|++|.+|..++++.+.+|+||.+||+|+++++|||||
T Consensus 285 a~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~ 364 (481)
T PLN02992 285 AWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHC 364 (481)
T ss_pred HHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecC
Confidence 9999999999999997531100 00012478899999888867888999999999999999999999
Q ss_pred CchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC---CCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHH
Q 011531 380 GWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK---DTCDGSIIEKLVRDLME-NKREEIMGSTDRVATMA 455 (483)
Q Consensus 380 G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~---~~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~~ 455 (483)
|+||+.||+++|||||++|+++||+.||+++++++|+|+.++ +.++.++|.++|+++|. ++++.++++++++++.+
T Consensus 365 G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 365 GWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTA 444 (481)
T ss_pred chhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975699999996 24899999999999997 46679999999999999
Q ss_pred HHHHh--cCCChHHHHHHHHHHHHHh
Q 011531 456 RDAVN--EGGSSYRNLDGLIEDIRLM 479 (483)
Q Consensus 456 ~~~~~--~gg~~~~~~~~l~~~l~~~ 479 (483)
+++++ +||||++++++|++++..-
T Consensus 445 ~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 445 EMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 99995 5999999999999998753
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-61 Score=490.98 Aligned_cols=446 Identities=24% Similarity=0.419 Sum_probs=329.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCC--cEEEEEeCCCchhhhhh-ccccccccC--CCCCeEEEeCCCCCCCCccc
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSAN--FQVTFVNTDHNHDLLLR-NTDITSFCN--RFPNFQFRSIPSGLPANVIR 81 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~V~~~~~~~~~~~~~~-~~~~~~~~~--~~~~v~f~~~p~~l~~~~~~ 81 (483)
|+||+++|++++||++|++.||+.|+.+| ..||+++++.+..++.. .... .... ..++++|+.+|.+.+...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~lp~~~~~~~-- 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYI-ASLSASSEDRLRYEVISAGDQPTT-- 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhh-hhcccCCCCCeEEEEcCCCCCCcc--
Confidence 68999999999999999999999999998 88999999877553321 0000 0001 123599999997654221
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhhhh--cCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhh
Q 011531 82 SGLTAKDVFDAMKAVSKPAFRDLLISLREET--EQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLL 159 (483)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 159 (483)
.. ...+. +...+.+.+.+.++++.+.. +.+.+.+|||+|.+.+| +..+|+++|||++.++++++..+..+.++
T Consensus 79 ~~---~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~w-a~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 79 ED---PTFQS-YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTS-MIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred cc---hHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchh-HHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 11 12222 22234455555555542210 11012389999999999 99999999999999999999988877766
Q ss_pred hhhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHH
Q 011531 160 PKLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVS 238 (483)
Q Consensus 160 ~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~ 238 (483)
+........+............+|++...++..+++..+.. ......+......+.+++.+++||| ++|+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~-----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 154 QMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS-----KEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred hhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC-----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 54221111111110001112246776422666677654433 1234445555566678899999999 99998888
Q ss_pred HHhh---ccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHH
Q 011531 239 LLGS---HFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWH 315 (483)
Q Consensus 239 ~~~~---~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~ 315 (483)
.+.+ ..|+++.|||+....... . . ...+.++++.+|++++++++||||||||+...+.+++++++.
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~---------~-~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~ 297 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSG---------D-D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAI 297 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccc---------c-c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHH
Confidence 7765 457899999994321110 0 0 001234579999998888899999999999899999999999
Q ss_pred HHHhCCCeEEEEEcCCccCC--------CCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHH
Q 011531 316 GLVNRGQRFLLVVRPDLILG--------EPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEG 387 (483)
Q Consensus 316 a~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~ea 387 (483)
+|+.++++|||+++.+.... ......+|+++.+|.++| +++++|+||.+||+|+++++||||||+||+.||
T Consensus 298 ~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea 376 (481)
T PLN02554 298 ALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDI-GKVIGWAPQVAVLAKPAIGGFVTHCGWNSILES 376 (481)
T ss_pred HHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccC-ceEEeeCCHHHHhCCcccCcccccCccchHHHH
Confidence 99999999999997532100 001113588888888887 999999999999999999999999999999999
Q ss_pred HHhCCceeccccccchhHHHHHHHHhhccceecC------------CCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHH
Q 011531 388 IAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK------------DTCDGSIIEKLVRDLME-NKREEIMGSTDRVATM 454 (483)
Q Consensus 388 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~------------~~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~ 454 (483)
+++|||||++|+++||+.||+++++.+|+|+.++ ..+++++|.++|+++|. | ++||+||+++++.
T Consensus 377 ~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~ 454 (481)
T PLN02554 377 LWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEK 454 (481)
T ss_pred HHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Confidence 9999999999999999999965446699999984 25799999999999997 6 8999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHh
Q 011531 455 ARDAVNEGGSSYRNLDGLIEDIRLM 479 (483)
Q Consensus 455 ~~~~~~~gg~~~~~~~~l~~~l~~~ 479 (483)
+++++++||++++++++|+++|+.-
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999753
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-61 Score=487.40 Aligned_cols=443 Identities=29% Similarity=0.446 Sum_probs=335.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCC----cEEEEEeCCCchh----hhhhccccccccCCCCCeEEEeCCCCCCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSAN----FQVTFVNTDHNHD----LLLRNTDITSFCNRFPNFQFRSIPSGLPA 77 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG----H~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~f~~~p~~l~~ 77 (483)
+|.|++++|++++||++|++.||+.|+.+| +.||+++++.+.+ ++..... ......+.++|..+|...++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~p 79 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVR--REAASGLDIRFHHLPAVEPP 79 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHh--hcccCCCCEEEEECCCCCCC
Confidence 467999999999999999999999999997 7999999876532 2322110 00011125999999965422
Q ss_pred CcccCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHH
Q 011531 78 NVIRSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYF 157 (483)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (483)
.. ..+...++..+...+.+.++++++.+. .+++|||+|.+.+| +..+|+++|||++.++++++..+..+.
T Consensus 80 ~~---~e~~~~~~~~~~~~~~~~l~~~L~~l~------~pv~cIV~D~f~~W-a~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 80 TD---AAGVEEFISRYIQLHAPHVRAAIAGLS------CPVAALVVDFFCTP-LLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred Cc---cccHHHHHHHHHHhhhHHHHHHHHhcC------CCceEEEECCcchh-HHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 11 112334444455567777888887652 35799999999999 999999999999999999998887766
Q ss_pred hhhhhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHH
Q 011531 158 LLPKLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPV 236 (483)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~ 236 (483)
+++......-.+... .. ....+|+++. ++..+++..+.. . .+.....+......+.+++.+++||| ++|+..
T Consensus 150 ~~~~~~~~~~~~~~~--~~-~~~~iPGlp~-l~~~dlp~~~~~-~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 222 (480)
T PLN00164 150 RLPALDEEVAVEFEE--ME-GAVDVPGLPP-VPASSLPAPVMD-K--KSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGV 222 (480)
T ss_pred hhhhhcccccCcccc--cC-cceecCCCCC-CChHHCCchhcC-C--CcHHHHHHHHHHHhhhhcCEEEEechHHhhHHH
Confidence 654321110001111 11 1123677776 777778765433 2 11223334444455578889999999 999999
Q ss_pred HHHHhhc-------cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHH
Q 011531 237 VSLLGSH-------FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQ 309 (483)
Q Consensus 237 ~~~~~~~-------~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~ 309 (483)
++.++.. .++++.|||++...... ..+..+++|.+||+++++++||||||||+...+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~-------------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q 289 (480)
T PLN00164 223 LAAIADGRCTPGRPAPTVYPIGPVISLAFTP-------------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQ 289 (480)
T ss_pred HHHHHhccccccCCCCceEEeCCCccccccC-------------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHH
Confidence 9988763 26799999997432110 111245679999999989999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCccCC------CCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchh
Q 011531 310 MSELWHGLVNRGQRFLLVVRPDLILG------EPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNS 383 (483)
Q Consensus 310 ~~~~~~a~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs 383 (483)
+.+++.+|+.++.+|||+++.+...+ ......+|+++.++..++.+.+.+|+||.+||+|+++++|||||||||
T Consensus 290 ~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS 369 (480)
T PLN00164 290 VREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNS 369 (480)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccch
Confidence 99999999999999999998532110 011123778888888777345559999999999999999999999999
Q ss_pred HHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-C-----CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHH
Q 011531 384 TLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-D-----TCDGSIIEKLVRDLMEN---KREEIMGSTDRVATM 454 (483)
Q Consensus 384 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~-----~~~~~~l~~~i~~ll~~---~~~~~~~~a~~l~~~ 454 (483)
++||+++|||||++|+++||+.||+++++.+|+|+.+. . ..++++|.++|+++|.+ +++.+|++|++|+++
T Consensus 370 ~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~ 449 (480)
T PLN00164 370 VLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAA 449 (480)
T ss_pred HHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876689999985 2 36999999999999974 478899999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 455 ARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 455 ~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
+++++++|||+++++++|+++|...+
T Consensus 450 ~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 450 CRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998653
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-61 Score=483.87 Aligned_cols=451 Identities=29% Similarity=0.463 Sum_probs=327.6
Q ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCC-----CCCCCC
Q 011531 4 SHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIP-----SGLPAN 78 (483)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p-----~~l~~~ 78 (483)
..++.|++++|++++||++|++.||+.|+.+|+.||+++++.+..++...... ..... ..++|+.+| +++|.+
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~-~~~~~-~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDR-ARESG-LPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhh-ccccC-CCeEEEEcCCCCccCCCCCC
Confidence 34568999999999999999999999999999999999998887666443210 00011 138999888 577765
Q ss_pred cccCC--C--CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHH
Q 011531 79 VIRSG--L--TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSW 154 (483)
Q Consensus 79 ~~~~~--~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~ 154 (483)
..... . ++...+......+.+.+.++++... .++||||+|.+.+| +..+|+++|||++.+++++++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~------~pp~cIV~D~f~~W-a~dVA~~lgIP~v~F~t~~a~~~~ 155 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAK------PPPSCIISDKCLSW-TSKTAQRFNIPRIVFHGMCCFSLL 155 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcC------CCCcEEEECCccHH-HHHHHHHhCCCeEEEecchHHHHH
Confidence 32111 1 1222222222235566677766532 46899999999999 999999999999999999888766
Q ss_pred HHHhhhhhhhCCCCCCCCCCCCCCccccCCCCC--CccCCCCCCccccCCCCChHHHHHHHHHhh-hcccccEEEEecC-
Q 011531 155 IYFLLPKLVEDGHIPFPDENMEKPVAGIPGFEN--FLRNRDLPGTCRVKTSDDDYLLQFFIGETF-AMTRASALILNTF- 230 (483)
Q Consensus 155 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~- 230 (483)
.+..+.... .+.+.... .....+|+++. .++..+++..+.. .. ....+..... ....++.+++|||
T Consensus 156 ~~~~~~~~~--~~~~~~~~---~~~~~iPg~p~~~~l~~~dlp~~~~~-~~----~~~~~~~~~~~~~~~a~~vlvNTf~ 225 (491)
T PLN02534 156 SSHNIRLHN--AHLSVSSD---SEPFVVPGMPQSIEITRAQLPGAFVS-LP----DLDDVRNKMREAESTAFGVVVNSFN 225 (491)
T ss_pred HHHHHHHhc--ccccCCCC---CceeecCCCCccccccHHHCChhhcC-cc----cHHHHHHHHHhhcccCCEEEEecHH
Confidence 543321111 11111111 01223566542 1444455543322 11 1222232222 2245678999999
Q ss_pred CCCHHHHHHHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcc-cccccccccccCCCCeEEEEecCcccCCCHH
Q 011531 231 EIEAPVVSLLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQT-EDTSCMTWLNSQPPKSVLYVSFGSLVGLTRE 308 (483)
Q Consensus 231 ~l~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~ 308 (483)
+||+..++.++... ++++.|||+........+. ......+. .+++|.+||+++++++||||||||......+
T Consensus 226 eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~------~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~ 299 (491)
T PLN02534 226 ELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDK------FERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPS 299 (491)
T ss_pred HhhHHHHHHHHhhcCCcEEEECcccccccccccc------cccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHH
Confidence 99999999887755 6899999997532110000 00001111 2356999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHH
Q 011531 309 QMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGI 388 (483)
Q Consensus 309 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal 388 (483)
++.+++.+|+.++.+|||+++.+..........+|++|.++..++|+++.+|+||.+||+|+++++||||||+||++||+
T Consensus 300 q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~ 379 (491)
T PLN02534 300 QLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGI 379 (491)
T ss_pred HHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHH
Confidence 99999999999999999999843110000111357888877555547778999999999999999999999999999999
Q ss_pred HhCCceeccccccchhHHHHHHHHhhccceecC-C-------------CCCHHHHHHHHHHHHh---HhHHHHHHHHHHH
Q 011531 389 AAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-D-------------TCDGSIIEKLVRDLME---NKREEIMGSTDRV 451 (483)
Q Consensus 389 ~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~-------------~~~~~~l~~~i~~ll~---~~~~~~~~~a~~l 451 (483)
++|||||++|+++||+.||+++++.+|+|+.+. . ..++++|.++|+++|. ++++++|+||++|
T Consensus 380 ~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~el 459 (491)
T PLN02534 380 CSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQEL 459 (491)
T ss_pred HcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 999999999999999999999998899999873 1 2789999999999995 5678999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 011531 452 ATMARDAVNEGGSSYRNLDGLIEDIRLM 479 (483)
Q Consensus 452 ~~~~~~~~~~gg~~~~~~~~l~~~l~~~ 479 (483)
++++++++.+|||+++++++||++|...
T Consensus 460 k~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 460 GVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999753
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.4e-61 Score=479.64 Aligned_cols=446 Identities=24% Similarity=0.365 Sum_probs=326.3
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCC----CCCCCCcc
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIP----SGLPANVI 80 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p----~~l~~~~~ 80 (483)
..+.||+++|++++||++|++.||+.|+.||+.||+++++.+..++..... ...+.++++.+| ++++.+..
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~-----~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS-----QLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc-----cCCCCeeEEECCCCccCCCCCCcc
Confidence 446899999999999999999999999999999999999888766643211 111258999888 56765432
Q ss_pred cCCCCHH----HHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHH
Q 011531 81 RSGLTAK----DVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIY 156 (483)
Q Consensus 81 ~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~ 156 (483)
...+.. ..+......+.+.+++++++ .+++|||+|.+..| +..+|+++|||++.++++++..+..+
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~cvI~D~f~~w-a~~vA~~~gIP~~~f~~~~a~~~~~~ 148 (472)
T PLN02670 79 -SSTDVPYTKQQLLKKAFDLLEPPLTTFLET--------SKPDWIIYDYASHW-LPSIAAELGISKAFFSLFTAATLSFI 148 (472)
T ss_pred -cccccchhhHHHHHHHHHHhHHHHHHHHHh--------CCCcEEEECCcchh-HHHHHHHcCCCEEEEehhhHHHHHHH
Confidence 122221 23333444466777777765 35899999999999 99999999999999999988877665
Q ss_pred HhhhhhhhCCCCCCCCCCCCCCccccCCCCC-CccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCH
Q 011531 157 FLLPKLVEDGHIPFPDENMEKPVAGIPGFEN-FLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEA 234 (483)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~ 234 (483)
.+.......+.++...+.....+.++|.... .++..+++.++.. ..........+......+.+++.+++||| +||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~ 227 (472)
T PLN02670 149 GPPSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEK-TEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEP 227 (472)
T ss_pred hhhHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhc-cCccchHHHHHHHHHhhcccCCEEEEeCHHHHhH
Confidence 4332211222222221111111122232221 1334456554432 11122223334444445577889999999 9999
Q ss_pred HHHHHHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHH
Q 011531 235 PVVSLLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSEL 313 (483)
Q Consensus 235 ~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~ 313 (483)
..++..+... ++++.|||+.+....... ...... +.++++.+||+++++++||||||||+...+.+++.++
T Consensus 228 ~~l~~l~~~~~~~v~~VGPl~~~~~~~~~-------~~~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el 299 (472)
T PLN02670 228 EWFDLLSDLYRKPIIPIGFLPPVIEDDEE-------DDTIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTEL 299 (472)
T ss_pred HHHHHHHHhhCCCeEEEecCCcccccccc-------cccccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 9999987754 689999999753110000 000000 1125699999998889999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeE-EeccCHHHHhccCCccceeeccCchhHHHHHHhCC
Q 011531 314 WHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFI-VSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGV 392 (483)
Q Consensus 314 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~-~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~Gv 392 (483)
+.+|+.++++|||+++.+..........+|++|.++..++ ..+ .+|+||.+||+|+++++|||||||||++||+++||
T Consensus 300 a~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~r-G~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GV 378 (472)
T PLN02670 300 ALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGR-GMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGR 378 (472)
T ss_pred HHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCC-CeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCC
Confidence 9999999999999998531110011125888999988776 555 59999999999999999999999999999999999
Q ss_pred ceeccccccchhHHHHHHHHhhccceecC-C----CCCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhcCCChH
Q 011531 393 PMICWPQFSDQLVNSRCVSEVWKIGFDMK-D----TCDGSIIEKLVRDLMEN-KREEIMGSTDRVATMARDAVNEGGSSY 466 (483)
Q Consensus 393 P~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~----~~~~~~l~~~i~~ll~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~ 466 (483)
|||++|+++||+.||+++++ +|+|+.++ . .++.++|+++|+++|.+ +|++||+||+++++.+++ .+...
T Consensus 379 P~l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~ 453 (472)
T PLN02670 379 VLILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNN 453 (472)
T ss_pred CEEeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhH
Confidence 99999999999999999965 89999996 2 38999999999999974 456899999999999998 46668
Q ss_pred HHHHHHHHHHHHhh
Q 011531 467 RNLDGLIEDIRLMA 480 (483)
Q Consensus 467 ~~~~~l~~~l~~~~ 480 (483)
+++++|+++|....
T Consensus 454 ~~~~~~~~~l~~~~ 467 (472)
T PLN02670 454 RYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHHhc
Confidence 89999999988754
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.4e-61 Score=476.55 Aligned_cols=434 Identities=31% Similarity=0.487 Sum_probs=324.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCC--cEEEE--EeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcc-
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSAN--FQVTF--VNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI- 80 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~- 80 (483)
.+.|++++|++++||++|++.||+.|+.+| +.|++ ++++.+...+..... ...+..++++|..+|...+....
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS--SVSSSFPSITFHHLPAVTPYSSSS 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc--cccCCCCCeEEEEcCCCCCCCCcc
Confidence 367999999999999999999999999998 55665 444333322221100 10122346999999976542211
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhh
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLP 160 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (483)
....+....+......+.+.+.++++++. ++ .+++|||+|.+.+| +..+|+++|||++.++++++..+..+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~-~pv~cII~D~~~~W-a~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLS---RN-FNVRAMIIDFFCTA-VLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcC---CC-CCceEEEECCcchh-HHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 11122222333333456677788887752 11 24599999999999 999999999999999999998888776654
Q ss_pred hhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHH
Q 011531 161 KLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSL 239 (483)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~ 239 (483)
..... .|..... ......+|+++. ++..+++..+.. . .+.....+......+.+++.+++||| ++|+..++.
T Consensus 155 ~~~~~--~~~~~~~-~~~~v~iPg~p~-l~~~dlp~~~~~-~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~ 227 (451)
T PLN03004 155 TIDET--TPGKNLK-DIPTVHIPGVPP-MKGSDMPKAVLE-R--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKA 227 (451)
T ss_pred hcccc--ccccccc-cCCeecCCCCCC-CChHHCchhhcC-C--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHH
Confidence 32110 1111000 012234677776 777788765544 2 22334445555566678889999999 999999998
Q ss_pred Hhhc--cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHH
Q 011531 240 LGSH--FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGL 317 (483)
Q Consensus 240 ~~~~--~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~ 317 (483)
++.. .++++.|||+....... . . .. ..+.+|.+||+++++++||||||||+...+.+++++++.+|
T Consensus 228 l~~~~~~~~v~~vGPl~~~~~~~---------~-~-~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL 295 (451)
T PLN03004 228 ITEELCFRNIYPIGPLIVNGRIE---------D-R-ND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGL 295 (451)
T ss_pred HHhcCCCCCEEEEeeeccCcccc---------c-c-cc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 8764 26899999997421100 0 0 11 12356999999998999999999999999999999999999
Q ss_pred HhCCCeEEEEEcCCccCC--CCC-CCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCce
Q 011531 318 VNRGQRFLLVVRPDLILG--EPG-AAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPM 394 (483)
Q Consensus 318 ~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~ 394 (483)
+.++.+|||+++.+.... ... ...+|++|++|..++|+.+.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 296 ~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~ 375 (451)
T PLN03004 296 EKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPM 375 (451)
T ss_pred HHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCE
Confidence 999999999998531100 001 11378899999888778888999999999999999999999999999999999999
Q ss_pred eccccccchhHHHHHHHHhhccceecC-C---CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011531 395 ICWPQFSDQLVNSRCVSEVWKIGFDMK-D---TCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYR 467 (483)
Q Consensus 395 l~~P~~~DQ~~na~~v~~~~G~G~~l~-~---~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 467 (483)
|++|+++||+.||+++++++|+|+.++ + ..++++|+++|+++|.+ ++||+++++++++.+.++++|||+++
T Consensus 376 v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 376 VAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred EeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999976689999996 2 57999999999999998 89999999999999999999999874
No 16
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.2e-60 Score=472.09 Aligned_cols=440 Identities=25% Similarity=0.399 Sum_probs=332.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhC-CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSA-NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGL 84 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~ 84 (483)
++.|++++|+|++||++|++.||+.|+.+ |..||+++++.+...+...... ......+++++..+|.....+-.....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAI-HAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccc-ccccCCCceEEEECCCCccccCCCCCc
Confidence 46799999999999999999999999987 9999999987665443211100 100011259999998533221001111
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCC-eEEEecchhHHHHHHHhhhhhh
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIP-LLALRTHNASYSWIYFLLPKLV 163 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~~~ 163 (483)
+....+......+.+.++++++++. .+++|||+|.+..| +..+|+++||| .+.+++++++....+.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~ciV~D~f~~w-~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK------RKPTVMIVDFFGTA-LMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC------CCCeEEEEcCCcHH-HHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 3333333344457788888888764 36899999999999 99999999999 5777788877766655544321
Q ss_pred hCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHHHhh
Q 011531 164 EDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSLLGS 242 (483)
Q Consensus 164 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~~~~ 242 (483)
. ..+....... ....+|+++. ++..+++..+.. . .......+......+.+++.+++||| +||+..++.++.
T Consensus 154 ~--~~~~~~~~~~-~~~~vPg~p~-l~~~dlp~~~~~-~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 154 T--VVEGEYVDIK-EPLKIPGCKP-VGPKELMETMLD-R--SDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred c--ccccccCCCC-CeeeCCCCCC-CChHHCCHhhcC-C--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 1 1111000111 1234788876 777777754433 1 12224444455555688999999999 999999998876
Q ss_pred c-------cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHH
Q 011531 243 H-------FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWH 315 (483)
Q Consensus 243 ~-------~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~ 315 (483)
. .++++.|||+..... . .+.+++|.+||+++++++||||||||....+.+++.+++.
T Consensus 227 ~~~~~~~~~~~v~~VGPl~~~~~-------------~---~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~ 290 (470)
T PLN03015 227 DMELNRVMKVPVYPIGPIVRTNV-------------H---VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAW 290 (470)
T ss_pred hcccccccCCceEEecCCCCCcc-------------c---ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHH
Confidence 4 156999999974210 0 0123469999999989999999999999999999999999
Q ss_pred HHHhCCCeEEEEEcCCcc-------CCCCCCCCCChhhhhhcCCCcee-EEeccCHHHHhccCCccceeeccCchhHHHH
Q 011531 316 GLVNRGQRFLLVVRPDLI-------LGEPGAAETPLAQNEGTEERNRF-IVSWAPQEEVLAHPAVGGFLTHGGWNSTLEG 387 (483)
Q Consensus 316 a~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~nv~-~~~~~p~~~ll~~~~~~~~ItHgG~gs~~ea 387 (483)
+|+.++++|||+++.+.. +.....+.+|+++.+|..++ .. +.+|+||.+||+|+++++|||||||||+.||
T Consensus 291 gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~r-Gl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Ea 369 (470)
T PLN03015 291 GLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGV-GLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLES 369 (470)
T ss_pred HHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccC-ceEEEecCCHHHHhccCccCeEEecCCchhHHHH
Confidence 999999999999975321 00001124788999888777 65 4599999999999999999999999999999
Q ss_pred HHhCCceeccccccchhHHHHHHHHhhccceecC-----CCCCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHH
Q 011531 388 IAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-----DTCDGSIIEKLVRDLME---NKREEIMGSTDRVATMARDAV 459 (483)
Q Consensus 388 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-----~~~~~~~l~~~i~~ll~---~~~~~~~~~a~~l~~~~~~~~ 459 (483)
+++|||||++|+++||+.||+++++.+|+|+.+. +..++++|+++|+++|. ++++++|+||++++++.++++
T Consensus 370 i~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av 449 (470)
T PLN03015 370 LTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAW 449 (470)
T ss_pred HHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999977899999994 35899999999999994 567999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHH
Q 011531 460 NEGGSSYRNLDGLIEDIR 477 (483)
Q Consensus 460 ~~gg~~~~~~~~l~~~l~ 477 (483)
++|||+++++++|+.++.
T Consensus 450 ~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 450 SHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred cCCCcHHHHHHHHHHhcc
Confidence 999999999999998863
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.9e-60 Score=482.73 Aligned_cols=451 Identities=27% Similarity=0.490 Sum_probs=319.1
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhcccccccc---CCC-CCeEEEeCC---CCCCC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFC---NRF-PNFQFRSIP---SGLPA 77 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~f~~~p---~~l~~ 77 (483)
++++||+++|+|+.||++|++.||++|++|||+||+++++.+..++..... ... ... -.+.+..+| .+++.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a--~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIE--AFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhh--hhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 356899999999999999999999999999999999999888766544321 110 111 134555566 35665
Q ss_pred CcccC-------CCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchh
Q 011531 78 NVIRS-------GLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 78 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~ 150 (483)
+.... ......+...+.. ..+.+.+.++++.+ . .+||+||+|.+++| +..+|+++|||++.++++++
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~---~-~~~~~IV~D~~~~w-~~~vA~~lgIP~v~f~~~~a 154 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLE---T-TRPDCLVADMFFPW-ATEAAEKFGVPRLVFHGTGY 154 (482)
T ss_pred CcccccccccccccchHHHHHHHHH-HHHHHHHHHHHHHh---c-CCCCEEEECCcchh-HHHHHHHhCCCeEEeecccH
Confidence 42111 1112222222221 22233333333221 1 47999999999999 99999999999999999888
Q ss_pred HHHHHHHhhhhhhhCCCCCCCCCCCCCCccccCCCCCC--ccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEe
Q 011531 151 SYSWIYFLLPKLVEDGHIPFPDENMEKPVAGIPGFENF--LRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILN 228 (483)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (483)
+....+..+....+....+... ....+|+++.. ++..+++. .................+.+++.+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~pg~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vl~N 224 (482)
T PLN03007 155 FSLCASYCIRVHKPQKKVASSS-----EPFVIPDLPGDIVITEEQIND-----ADEESPMGKFMKEVRESEVKSFGVLVN 224 (482)
T ss_pred HHHHHHHHHHhcccccccCCCC-----ceeeCCCCCCccccCHHhcCC-----CCCchhHHHHHHHHHhhcccCCEEEEE
Confidence 7766544332211111111000 11124555421 22222321 111222333344444556788899999
Q ss_pred cC-CCCHHHHHHHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCC
Q 011531 229 TF-EIEAPVVSLLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLT 306 (483)
Q Consensus 229 s~-~l~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~ 306 (483)
|| ++|++..+.+++.. +.+++|||+.......... ...++..+..+++|.+||+++++++||||||||+...+
T Consensus 225 t~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~-----~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~ 299 (482)
T PLN03007 225 SFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEK-----AERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFK 299 (482)
T ss_pred CHHHHHHHHHHHHHhccCCCEEEEccccccccccccc-----cccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCC
Confidence 99 99999888887655 4799999986532210000 00011112234679999998888999999999999988
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHH
Q 011531 307 REQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLE 386 (483)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~e 386 (483)
.+.+.+++.+|+.++++|||+++.+...+ .....+|+++.++..++|+++.+|+||.+||+|+++++||||||+||++|
T Consensus 300 ~~~~~~~~~~l~~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~E 378 (482)
T PLN03007 300 NEQLFEIAAGLEGSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLE 378 (482)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHH
Confidence 99999999999999999999998542110 00124788888887666689899999999999999999999999999999
Q ss_pred HHHhCCceeccccccchhHHHHHHHHhhccceec--------C-CCCCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHH
Q 011531 387 GIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDM--------K-DTCDGSIIEKLVRDLMEN-KREEIMGSTDRVATMAR 456 (483)
Q Consensus 387 al~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l--------~-~~~~~~~l~~~i~~ll~~-~~~~~~~~a~~l~~~~~ 456 (483)
|+++|||||++|+++||+.||+++++.+++|+.+ + ..+++++|+++|+++|.+ ++++||++|++++++++
T Consensus 379 al~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~ 458 (482)
T PLN03007 379 GVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAK 458 (482)
T ss_pred HHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987655666554 3 457999999999999984 45699999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHh
Q 011531 457 DAVNEGGSSYRNLDGLIEDIRLM 479 (483)
Q Consensus 457 ~~~~~gg~~~~~~~~l~~~l~~~ 479 (483)
+++.+||++++++++|++++...
T Consensus 459 ~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 459 AAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHhCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999998753
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-60 Score=481.96 Aligned_cols=453 Identities=24% Similarity=0.396 Sum_probs=327.2
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCC---cEEEEEeCCCchh-hhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSAN---FQVTFVNTDHNHD-LLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG---H~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
+++.|++++|++++||++|++.||+.|+.+| +.||++.++.+.. ....... ......++++|..+|....+...
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~p~~~ 78 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLK--SLIASEPRIRLVTLPEVQDPPPM 78 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHh--hcccCCCCeEEEECCCCCCCccc
Confidence 4678999999999999999999999999998 4577777543322 1111000 00012246999999965422110
Q ss_pred c-CCCCHHHHHHHHHHhchHHHHHHHHHhhhhh-cCCC-CccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHH
Q 011531 81 R-SGLTAKDVFDAMKAVSKPAFRDLLISLREET-EQRQ-SPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYF 157 (483)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~-~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (483)
. ........+..+...+.+.+++.++++.... ..+. +++|||+|.+.+| +..+|+++|||++.++++++..+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~W-a~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVP-LIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHH-HHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0 0111222333333445666677776653210 1102 4599999999999 999999999999999999998777666
Q ss_pred hhhhhhhCCCCC--CCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCH
Q 011531 158 LLPKLVEDGHIP--FPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEA 234 (483)
Q Consensus 158 ~~~~~~~~~~~p--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~ 234 (483)
+++.... ..+ ....... ....+|++...++..+++..+.. .. ..+.+........+++.+++||| ++|+
T Consensus 158 ~~~~~~~--~~~~~~~~~~~~-~~~~iPgl~~~l~~~dlp~~~~~-~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 229 (475)
T PLN02167 158 YLPERHR--KTASEFDLSSGE-EELPIPGFVNSVPTKVLPPGLFM-KE----SYEAWVEIAERFPEAKGILVNSFTELEP 229 (475)
T ss_pred HHHHhcc--ccccccccCCCC-CeeECCCCCCCCChhhCchhhhC-cc----hHHHHHHHHHhhcccCEeeeccHHHHHH
Confidence 5443111 111 0010101 11236776322566666643333 11 12334444455677889999999 9999
Q ss_pred HHHHHHhhc---cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHH
Q 011531 235 PVVSLLGSH---FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMS 311 (483)
Q Consensus 235 ~~~~~~~~~---~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~ 311 (483)
..++.++.. .|+++.|||++....... . ..+ ...+.+|.+||+.+++++||||||||+...+.+++.
T Consensus 230 ~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~-~------~~~---~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ 299 (475)
T PLN02167 230 NAFDYFSRLPENYPPVYPVGPILSLKDRTS-P------NLD---SSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIK 299 (475)
T ss_pred HHHHHHHhhcccCCeeEEeccccccccccC-C------CCC---cchhHHHHHHHhcCCCCceEEEeecccccCCHHHHH
Confidence 999887653 478999999986422100 0 111 112357999999888899999999999989999999
Q ss_pred HHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhC
Q 011531 312 ELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAG 391 (483)
Q Consensus 312 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~G 391 (483)
+++.+|+.++++|||+++.+..........+|+++.+|..++ +++++|+||.+||+|++|++|||||||||++||+++|
T Consensus 300 ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~G 378 (475)
T PLN02167 300 EIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFG 378 (475)
T ss_pred HHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcC
Confidence 999999999999999997531100001124788998888887 9999999999999999999999999999999999999
Q ss_pred CceeccccccchhHHHHHHHHhhccceecC-C-------CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCC
Q 011531 392 VPMICWPQFSDQLVNSRCVSEVWKIGFDMK-D-------TCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGG 463 (483)
Q Consensus 392 vP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~-------~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg 463 (483)
||||++|+++||+.||+++++.+|+|+.+. . ..++++|+++|+++|.++ ++||++|+++++.+++++.+||
T Consensus 379 vP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~gG 457 (475)
T PLN02167 379 VPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDGG 457 (475)
T ss_pred CCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999987556699999885 2 469999999999999852 5899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhh
Q 011531 464 SSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 464 ~~~~~~~~l~~~l~~~~ 480 (483)
+++.++++||++|.+.+
T Consensus 458 sS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 458 SSFVAVKRFIDDLLGDH 474 (475)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 99999999999998764
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-59 Score=465.21 Aligned_cols=427 Identities=21% Similarity=0.341 Sum_probs=318.8
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCC--CCCCCCcccC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIP--SGLPANVIRS 82 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p--~~l~~~~~~~ 82 (483)
..++||+++|++++||++|++.||+.|+.+|+.||+++++.+...+... .. ....-.+.+..+| ++++.+.. .
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~~---~~~~~~v~~~~~p~~~glp~g~e-~ 77 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-NL---FPHNIVFRSVTVPHVDGLPVGTE-T 77 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-cc---CCCCceEEEEECCCcCCCCCccc-c
Confidence 4679999999999999999999999999999999999998876554331 00 0000127777787 66765521 1
Q ss_pred CCCH----HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHh
Q 011531 83 GLTA----KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFL 158 (483)
Q Consensus 83 ~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~ 158 (483)
..++ ...+......+.+.+.++++. .++|+||+|. .+| +..+|+++|||++.++++++..+..+..
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~--------~~~~~iV~D~-~~w-~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRA--------VEPDLIFFDF-AHW-IPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHh--------CCCCEEEECC-chh-HHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 1111 112222222455677777766 3589999995 889 9999999999999999999987666532
Q ss_pred hhhhhhCCCCCCCCCCCCCCccccCCCCC---CccCCCCCCccc--cCCCCChHHHHHHHHHhhhcccccEEEEecC-CC
Q 011531 159 LPKLVEDGHIPFPDENMEKPVAGIPGFEN---FLRNRDLPGTCR--VKTSDDDYLLQFFIGETFAMTRASALILNTF-EI 232 (483)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l 232 (483)
+ ...++ .. .|+++. .++..+++.+.. . ....+............+.+++.+++||| ++
T Consensus 148 -~----~~~~~-------~~---~pglp~~~v~l~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eL 211 (453)
T PLN02764 148 -P----GGELG-------VP---PPGYPSSKVLLRKQDAYTMKNLEP-TNTIDVGPNLLERVTTSLMNSDVIAIRTAREI 211 (453)
T ss_pred -c----cccCC-------CC---CCCCCCCcccCcHhhCcchhhcCC-CccchhHHHHHHHHHHhhccCCEEEEeccHHh
Confidence 1 01110 00 134431 133344443211 1 11111222222222244577889999999 99
Q ss_pred CHHHHHHHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHH
Q 011531 233 EAPVVSLLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMS 311 (483)
Q Consensus 233 ~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~ 311 (483)
|+..++..+... ++++.|||+...... . .+.+++|.+|||+|++++||||||||....+.+++.
T Consensus 212 E~~~~~~~~~~~~~~v~~VGPL~~~~~~----------~-----~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ 276 (453)
T PLN02764 212 EGNFCDYIEKHCRKKVLLTGPVFPEPDK----------T-----RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQ 276 (453)
T ss_pred hHHHHHHHHhhcCCcEEEeccCccCccc----------c-----ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHH
Confidence 999999887753 679999999753210 0 012457999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhC
Q 011531 312 ELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAG 391 (483)
Q Consensus 312 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~G 391 (483)
++..+|+.++.+|+|+++.+...+ .....+|++|+++..++.+.+.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 277 ela~gL~~s~~pflwv~r~~~~~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~G 355 (453)
T PLN02764 277 ELCLGMELTGSPFLVAVKPPRGSS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSD 355 (453)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcC
Confidence 999999999999999998532110 0112588999998888734555999999999999999999999999999999999
Q ss_pred CceeccccccchhHHHHHHHHhhccceecC-C---CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCC
Q 011531 392 VPMICWPQFSDQLVNSRCVSEVWKIGFDMK-D---TCDGSIIEKLVRDLMEN---KREEIMGSTDRVATMARDAVNEGGS 464 (483)
Q Consensus 392 vP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~---~~~~~~l~~~i~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg~ 464 (483)
||||++|+++||+.||+++++.+|+|+.+. + .++.++|.++|+++|.+ +++++|++++++++++++ ||+
T Consensus 356 VP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GS 431 (453)
T PLN02764 356 CQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGL 431 (453)
T ss_pred CCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCC
Confidence 999999999999999999976689999975 2 58999999999999963 467799999999999976 899
Q ss_pred hHHHHHHHHHHHHHhhhc
Q 011531 465 SYRNLDGLIEDIRLMARK 482 (483)
Q Consensus 465 ~~~~~~~l~~~l~~~~~~ 482 (483)
+++++++|+++++..+.+
T Consensus 432 S~~~l~~lv~~~~~~~~~ 449 (453)
T PLN02764 432 LTGYVDNFIESLQDLVSG 449 (453)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999988764
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2e-59 Score=466.70 Aligned_cols=417 Identities=20% Similarity=0.343 Sum_probs=309.4
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeC--C--CCCCCCcc
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSI--P--SGLPANVI 80 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~--p--~~l~~~~~ 80 (483)
++++|++++|+++.||++|++.||+.|+++||+||+++++.+..++... + ...+.+++..+ | ++++.+..
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~-~-----a~~~~i~~~~l~~p~~dgLp~g~~ 75 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH-N-----LFPDSIVFHPLTIPPVNGLPAGAE 75 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc-c-----CCCCceEEEEeCCCCccCCCCCcc
Confidence 3489999999999999999999999999999999999998766665432 1 01113556554 3 45665432
Q ss_pred cCCCCHHHH----HHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHH
Q 011531 81 RSGLTAKDV----FDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIY 156 (483)
Q Consensus 81 ~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~ 156 (483)
...++... +......+.+.++++++. .++||||+| +..| +..+|.++|||++.++++++.... +
T Consensus 76 -~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~--------~~~~cVV~D-~~~w-a~~vA~e~giP~~~f~~~~a~~~~-~ 143 (442)
T PLN02208 76 -TTSDIPISMDNLLSEALDLTRDQVEAAVRA--------LRPDLIFFD-FAQW-IPEMAKEHMIKSVSYIIVSATTIA-H 143 (442)
T ss_pred -cccchhHHHHHHHHHHHHHHHHHHHHHHhh--------CCCeEEEEC-CcHh-HHHHHHHhCCCEEEEEhhhHHHHH-H
Confidence 12222211 222222344555555554 468999999 5789 999999999999999999887543 3
Q ss_pred HhhhhhhhCCCCCCCCCCCCCCccccCCCCC---CccCCCCCCccccCCCCChHHHHHHHHHh-hhcccccEEEEecC-C
Q 011531 157 FLLPKLVEDGHIPFPDENMEKPVAGIPGFEN---FLRNRDLPGTCRVKTSDDDYLLQFFIGET-FAMTRASALILNTF-E 231 (483)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~-~ 231 (483)
.+.+. .. .... +|+++. .++..+++.+. . .......+.... ....+++.+++||| +
T Consensus 144 ~~~~~----~~-------~~~~---~pglp~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~vl~Ntf~e 204 (442)
T PLN02208 144 THVPG----GK-------LGVP---PPGYPSSKVLFRENDAHALA-T----LSIFYKRLYHQITTGLKSCDVIALRTCKE 204 (442)
T ss_pred HccCc----cc-------cCCC---CCCCCCcccccCHHHcCccc-c----cchHHHHHHHHHHhhhccCCEEEEECHHH
Confidence 33211 00 0001 244432 12334444321 1 112233333222 34467889999999 9
Q ss_pred CCHHHHHHHhhc-cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHH
Q 011531 232 IEAPVVSLLGSH-FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQM 310 (483)
Q Consensus 232 l~~~~~~~~~~~-~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~ 310 (483)
+|+..++..+.. .|+++.|||++..... + ...++++.+||+++++++||||||||...++.+++
T Consensus 205 LE~~~~~~~~~~~~~~v~~vGpl~~~~~~------------~---~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~ 269 (442)
T PLN02208 205 IEGKFCDYISRQYHKKVLLTGPMFPEPDT------------S---KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQF 269 (442)
T ss_pred HHHHHHHHHHhhcCCCEEEEeecccCcCC------------C---CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHH
Confidence 999999877654 4799999999854210 0 12356799999998889999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHh
Q 011531 311 SELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAA 390 (483)
Q Consensus 311 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~ 390 (483)
.+++.+++.++.+++|+++.+.... .....+|++|.++..++|+.+.+|+||.+||+|+++++|||||||||++||+++
T Consensus 270 ~e~~~~l~~s~~pf~wv~r~~~~~~-~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~ 348 (442)
T PLN02208 270 QELCLGMELTGLPFLIAVKPPRGSS-TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVS 348 (442)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCccc-chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHc
Confidence 9998888888899999997531100 011257889999887776888899999999999999999999999999999999
Q ss_pred CCceeccccccchhHHHHHHHHhhccceecC-CC---CCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCC
Q 011531 391 GVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DT---CDGSIIEKLVRDLMEN---KREEIMGSTDRVATMARDAVNEGG 463 (483)
Q Consensus 391 GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~---~~~~~l~~~i~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg 463 (483)
|||||++|+++||+.||+++++.+|+|+.++ .+ +++++|+++|+++|.+ +++++|++++++++.+.+ +|
T Consensus 349 GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~g 424 (442)
T PLN02208 349 DCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PG 424 (442)
T ss_pred CCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CC
Confidence 9999999999999999998877689999996 33 8999999999999963 467899999999999854 78
Q ss_pred ChHHHHHHHHHHHHH
Q 011531 464 SSYRNLDGLIEDIRL 478 (483)
Q Consensus 464 ~~~~~~~~l~~~l~~ 478 (483)
++++++++|+++|+.
T Consensus 425 sS~~~l~~~v~~l~~ 439 (442)
T PLN02208 425 LLTGYVDKFVEELQE 439 (442)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999999964
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.1e-58 Score=456.09 Aligned_cols=418 Identities=20% Similarity=0.313 Sum_probs=306.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeC--C--CCCCCCccc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSI--P--SGLPANVIR 81 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~--p--~~l~~~~~~ 81 (483)
.+.|++++|+|+.||++|++.||+.|+++|++||+++++.+..++.... ...+.++|..+ | +++|.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~------~~~~~i~~~~i~lP~~dGLP~g~e- 75 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN------LFPDSIVFEPLTLPPVDGLPFGAE- 75 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc------cCCCceEEEEecCCCcCCCCCccc-
Confidence 4789999999999999999999999999999999999987765553321 11124777554 3 56665521
Q ss_pred CCCCHHH----HHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHH
Q 011531 82 SGLTAKD----VFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYF 157 (483)
Q Consensus 82 ~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (483)
...++.. .+......+.+.++++++. .+||+||+|. .+| +..+|+++|||++.++++++.....+.
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~--------~~p~cVV~D~-~~w-a~~vA~~lgIP~~~F~~~~a~~~~~~~ 145 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRA--------LKPDLIFFDF-VHW-VPEMAKEFGIKSVNYQIISAACVAMVL 145 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhc--------CCCeEEEECC-chh-HHHHHHHhCCCEEEEecHHHHHHHHHh
Confidence 1212211 1112122233444444433 4689999995 889 999999999999999999998776654
Q ss_pred hhhhhhhCCCCCCCCCCCCCCccccCCCCC---CccCCCC--CCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-C
Q 011531 158 LLPKLVEDGHIPFPDENMEKPVAGIPGFEN---FLRNRDL--PGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-E 231 (483)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~ 231 (483)
+ +. .. .... .|+++. .++..+. +.++.. ....+........+++.+++||| +
T Consensus 146 ~-~~-~~----------~~~~---~pg~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~vlvNTf~e 203 (446)
T PLN00414 146 A-PR-AE----------LGFP---PPDYPLSKVALRGHDANVCSLFAN-------SHELFGLITKGLKNCDVVSIRTCVE 203 (446)
T ss_pred C-cH-hh----------cCCC---CCCCCCCcCcCchhhcccchhhcc-------cHHHHHHHHHhhccCCEEEEechHH
Confidence 3 11 00 0000 122221 0111111 111111 11223333344567889999999 9
Q ss_pred CCHHHHHHHhhcc-CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHH
Q 011531 232 IEAPVVSLLGSHF-TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQM 310 (483)
Q Consensus 232 l~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~ 310 (483)
||+..++.++... ++++.|||+.+..... . . ...+++|.+|||.|++++||||||||....+.+++
T Consensus 204 LE~~~~~~~~~~~~~~v~~VGPl~~~~~~~---------~---~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~ 270 (446)
T PLN00414 204 LEGNLCDFIERQCQRKVLLTGPMLPEPQNK---------S---G-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQF 270 (446)
T ss_pred HHHHHHHHHHHhcCCCeEEEcccCCCcccc---------c---C-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHH
Confidence 9999999887754 5799999997532100 0 0 11235699999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEE-eccCHHHHhccCCccceeeccCchhHHHHHH
Q 011531 311 SELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIV-SWAPQEEVLAHPAVGGFLTHGGWNSTLEGIA 389 (483)
Q Consensus 311 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~ 389 (483)
.+++.+|+.++.+|+|+++.+...+ ...+.+|++|+++..++ .+++ +|+||.+||+|+++++|||||||||++||++
T Consensus 271 ~e~a~gL~~s~~~Flwvvr~~~~~~-~~~~~lp~~f~~r~~~~-g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~ 348 (446)
T PLN00414 271 QEFCLGMELTGLPFLIAVMPPKGSS-TVQEALPEGFEERVKGR-GIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLV 348 (446)
T ss_pred HHHHHHHHHcCCCeEEEEecCCCcc-cchhhCChhHHHHhcCC-CeEEeccCCHHHHhcCCccceEEecCchhHHHHHHH
Confidence 9999999999999999998642110 01125889999998887 6665 9999999999999999999999999999999
Q ss_pred hCCceeccccccchhHHHHHHHHhhccceecC-C---CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcC
Q 011531 390 AGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-D---TCDGSIIEKLVRDLMEN---KREEIMGSTDRVATMARDAVNEG 462 (483)
Q Consensus 390 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~---~~~~~~l~~~i~~ll~~---~~~~~~~~a~~l~~~~~~~~~~g 462 (483)
+|||||++|+++||+.||+++++.+|+|+.+. + .+++++|+++|+++|.+ +++++|++|+++++.+.+ +|
T Consensus 349 ~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~g 425 (446)
T PLN00414 349 SDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PG 425 (446)
T ss_pred cCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CC
Confidence 99999999999999999999976689999995 2 48999999999999963 457799999999999854 37
Q ss_pred CChHHHHHHHHHHHHHhhh
Q 011531 463 GSSYRNLDGLIEDIRLMAR 481 (483)
Q Consensus 463 g~~~~~~~~l~~~l~~~~~ 481 (483)
|++ .++++|+++++..+.
T Consensus 426 g~s-s~l~~~v~~~~~~~~ 443 (446)
T PLN00414 426 LLS-GYADKFVEALENEVN 443 (446)
T ss_pred CcH-HHHHHHHHHHHHhcc
Confidence 733 459999999976543
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-52 Score=424.81 Aligned_cols=416 Identities=17% Similarity=0.194 Sum_probs=290.3
Q ss_pred CCCEEEEE-cCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCC--CcccC
Q 011531 6 VNPHVVLL-PYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPA--NVIRS 82 (483)
Q Consensus 6 ~~~~il~~-~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~--~~~~~ 82 (483)
...||+++ |.++.||+..+..|+++|++|||+||++++.... .. .. ....+++.+.++...+. .....
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~-~~-------~~~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YY-AS-------HLCGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cc-cc-------CCCCCEEEEEcCCChHHHHHHHhh
Confidence 34678755 8899999999999999999999999999874311 00 00 01124666555411110 00000
Q ss_pred C------C---CHHH----HHHHHHHhchHHH--HHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHc-CCCeEEEe
Q 011531 83 G------L---TAKD----VFDAMKAVSKPAF--RDLLISLREETEQRQSPTCVIADGILCFLTLDVSEEL-QIPLLALR 146 (483)
Q Consensus 83 ~------~---~~~~----~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~l-gIP~v~~~ 146 (483)
. . +... .+..+...|...+ .++.+.+++ +. .++|+||+|.+..| +..+|+++ ++|.|.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~~-~kFDlvi~e~~~~c-~~~la~~~~~~p~i~~s 165 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--KN-NKFDLLVTEAFLDY-PLVFSHLFGDAPVIQIS 165 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--CC-CceeEEEecccchh-HHHHHHHhCCCCEEEEc
Confidence 0 0 0000 1111122232222 122222220 11 57999999988776 99999999 99998887
Q ss_pred cchhHHHHHHHhhh-hhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHH-----Hhhhcc
Q 011531 147 THNASYSWIYFLLP-KLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIG-----ETFAMT 220 (483)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 220 (483)
+........ ...+ .|.+++|+|.....+++.|.++.++.|.+................+...+.... ..+...
T Consensus 166 s~~~~~~~~-~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~ 244 (507)
T PHA03392 166 SGYGLAENF-ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRN 244 (507)
T ss_pred CCCCchhHH-HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHh
Confidence 765543332 3455 899999999999999999999998888321110000000000011122222211 123346
Q ss_pred cccEEEEecC-CCCHHHHHHHhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEec
Q 011531 221 RASALILNTF-EIEAPVVSLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSF 299 (483)
Q Consensus 221 ~~~~~l~~s~-~l~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~ 299 (483)
+.+++|+|+. .+++| ++++|++++|||++.+... ..+.++++.+|++++ ++++|||||
T Consensus 245 ~~~l~lvns~~~~d~~-----rp~~p~v~~vGgi~~~~~~---------------~~~l~~~l~~fl~~~-~~g~V~vS~ 303 (507)
T PHA03392 245 RVQLLFVNVHPVFDNN-----RPVPPSVQYLGGLHLHKKP---------------PQPLDDYLEEFLNNS-TNGVVYVSF 303 (507)
T ss_pred CCcEEEEecCccccCC-----CCCCCCeeeecccccCCCC---------------CCCCCHHHHHHHhcC-CCcEEEEEC
Confidence 7789999999 77776 9999999999999864211 113466788999854 458999999
Q ss_pred CcccC---CCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCcccee
Q 011531 300 GSLVG---LTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFL 376 (483)
Q Consensus 300 Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I 376 (483)
||+.. .+.+.++.+++++++.+.++||++..+ ..+ ...++| +++.+|+||.+||+||+|++||
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~---------~~~----~~~p~N-v~i~~w~Pq~~lL~hp~v~~fI 369 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE---------VEA----INLPAN-VLTQKWFPQRAVLKHKNVKAFV 369 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC---------cCc----ccCCCc-eEEecCCCHHHHhcCCCCCEEE
Confidence 99874 567889999999999999999999532 111 113455 9999999999999999999999
Q ss_pred eccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 011531 377 THGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMA 455 (483)
Q Consensus 377 tHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~ 455 (483)
||||+||+.||+++|||+|++|+++||+.||+|+++ +|+|+.++ ..+++++|.++|+++|+| ++|++||+++++.+
T Consensus 370 tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~ 446 (507)
T PHA03392 370 TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLI 446 (507)
T ss_pred ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 89999998 789999999999999999 99999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHH
Q 011531 456 RDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 456 ~~~~~~gg~~~~~~~~l~~~l 476 (483)
++. .-...+.+..-+|.+
T Consensus 447 ~~~---p~~~~~~av~~iE~v 464 (507)
T PHA03392 447 RHQ---PMTPLHKAIWYTEHV 464 (507)
T ss_pred HhC---CCCHHHHHHHHHHHH
Confidence 984 222234444445544
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.3e-53 Score=438.97 Aligned_cols=401 Identities=24% Similarity=0.335 Sum_probs=244.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCC-CC--
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSG-LT-- 85 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~-~~-- 85 (483)
||+++|. ++||+.++..|+++|++|||+||++++.. ...+.. ....++++..++..++....... ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSP-SSSLNP--------SKPSNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHH-HHT--------------S-CCEEEE-----TT------TTHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeec-cccccc--------ccccceeeEEEcCCcchHHHhhhhHHHH
Confidence 6888885 77999999999999999999999998732 222211 11224666666654443221111 11
Q ss_pred ------------HHHHHHHHH-------HhchHHH--HHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 86 ------------AKDVFDAMK-------AVSKPAF--RDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 86 ------------~~~~~~~~~-------~~~~~~~--~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
....+..+. ..|...+ .++++.+++ .++|++|+|.+..| +..+|+.+++|.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-----~~fDlvI~d~f~~c-~~~la~~l~iP~i~ 145 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-----EKFDLVISDAFDPC-GLALAHYLGIPVII 145 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-----HHHCT-EEEEEESS-HHHHHHHHHHTHHH
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----hccccceEeeccch-hHHHHHHhcCCeEE
Confidence 011111110 0111000 112222222 46999999998886 99999999999988
Q ss_pred EecchhHHHHHHHhhhhhhhCCCCCCCCCCCCCCccccCCCCCCccCCC-----------CCCccccCCCCChHHHHHHH
Q 011531 145 LRTHNASYSWIYFLLPKLVEDGHIPFPDENMEKPVAGIPGFENFLRNRD-----------LPGTCRVKTSDDDYLLQFFI 213 (483)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 213 (483)
+.+............+.|.+++|+|....++++.+.++.++.|.+.... ....... .......
T Consensus 146 ~~s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----- 219 (500)
T PF00201_consen 146 ISSSTPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKK-YFGFPFS----- 219 (500)
T ss_dssp HHHCCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EE-ESS-GGG-----
T ss_pred EecccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhh-hcccccc-----
Confidence 7554333222222236778899999998888889999988888321100 0011111 0001100
Q ss_pred HHhhhcccccEEEEecC-CCCHHHHHHHhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCC
Q 011531 214 GETFAMTRASALILNTF-EIEAPVVSLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPK 292 (483)
Q Consensus 214 ~~~~~~~~~~~~l~~s~-~l~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 292 (483)
..+.+.+.+++++|+. .++.| +|.+|++++||+++....+ +.+.++.+|+++..++
T Consensus 220 -~~~~~~~~~l~l~ns~~~ld~p-----rp~~p~v~~vGgl~~~~~~-----------------~l~~~~~~~~~~~~~~ 276 (500)
T PF00201_consen 220 -FRELLSNASLVLINSHPSLDFP-----RPLLPNVVEVGGLHIKPAK-----------------PLPEELWNFLDSSGKK 276 (500)
T ss_dssp -CHHHHHHHHHCCSSTEEE---------HHHHCTSTTGCGC-S---------------------TCHHHHHHHTSTTTTT
T ss_pred -cHHHHHHHHHHhhhccccCcCC-----cchhhcccccCcccccccc-----------------ccccccchhhhccCCC
Confidence 1122245567888998 66665 8999999999999875432 2345677899865678
Q ss_pred eEEEEecCcccCCCH-HHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCC
Q 011531 293 SVLYVSFGSLVGLTR-EQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPA 371 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~ 371 (483)
++|||||||.+...+ +.++.+++++++++.+|||+++.. .+.. .++| +++.+|+||.+||+||+
T Consensus 277 ~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~----------~~~~----l~~n-~~~~~W~PQ~~lL~hp~ 341 (500)
T PF00201_consen 277 GVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE----------PPEN----LPKN-VLIVKWLPQNDLLAHPR 341 (500)
T ss_dssp EEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS----------HGCH----HHTT-EEEESS--HHHHHTSTT
T ss_pred CEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc----------cccc----ccce-EEEeccccchhhhhccc
Confidence 999999999986444 447889999999999999999531 1111 3455 99999999999999999
Q ss_pred ccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011531 372 VGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDR 450 (483)
Q Consensus 372 ~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~ 450 (483)
+++||||||+||+.||+++|||+|++|+++||+.||+++++ .|+|+.++ .++++++|.++|+++|+| ++|++||++
T Consensus 342 v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ 418 (500)
T PF00201_consen 342 VKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKR 418 (500)
T ss_dssp EEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHH
T ss_pred ceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHH
Confidence 99999999999999999999999999999999999999975 89999999 899999999999999999 999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011531 451 VATMARDAVNEGGSSYRNLDGLIEDIRL 478 (483)
Q Consensus 451 l~~~~~~~~~~gg~~~~~~~~l~~~l~~ 478 (483)
+++++++. ....+++++..++.
T Consensus 419 ls~~~~~~------p~~p~~~~~~~ie~ 440 (500)
T PF00201_consen 419 LSSLFRDR------PISPLERAVWWIEY 440 (500)
T ss_dssp HHHTTT----------------------
T ss_pred HHHHHhcC------CCCHHHHHHHHHHH
Confidence 99999873 23345555544443
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=9.7e-42 Score=341.44 Aligned_cols=375 Identities=19% Similarity=0.266 Sum_probs=248.9
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCccc-C--CCCHHHH
Q 011531 13 LPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIR-S--GLTAKDV 89 (483)
Q Consensus 13 ~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~-~--~~~~~~~ 89 (483)
+.+|+.||++|++.||++|+++||+|++++++.+.+.+... ++.|..++..+...... . ..+....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~-----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA-----------GAEFVLYGSALPPPDNPPENTEEEPIDI 69 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc-----------CCEEEecCCcCccccccccccCcchHHH
Confidence 36899999999999999999999999999997776666553 48888888654331110 0 1233333
Q ss_pred HHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhhCCCCC
Q 011531 90 FDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVEDGHIP 169 (483)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (483)
.+.+.......+..+++.+++ .+||+||+|.++++ +..+|+.+|||+|.+++.+... ..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~-----~~pDlVi~d~~~~~-~~~~A~~~giP~v~~~~~~~~~----~~~~~~----~~~ 135 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKG-----DRPDLIVYDIASWT-GRLLARKWDVPVISSFPTFAAN----EEFEEM----VSP 135 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCCEEEECCccHH-HHHHHHHhCCCEEEEehhhccc----cccccc----ccc
Confidence 333333333344444444432 68999999998888 9999999999999986543211 000000 001
Q ss_pred CCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhh---------hcccccEEEEecC-CCCHHHHHH
Q 011531 170 FPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETF---------AMTRASALILNTF-EIEAPVVSL 239 (483)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~s~-~l~~~~~~~ 239 (483)
... .+ +...+ ..+ +....+. ...+....... ........++.+. .|+++
T Consensus 136 ~~~-~~---~~~~~-~~~----~~~~~~~--------~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~---- 194 (392)
T TIGR01426 136 AGE-GS---AEEGA-IAE----RGLAEYV--------ARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA---- 194 (392)
T ss_pred cch-hh---hhhhc-ccc----chhHHHH--------HHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC----
Confidence 000 00 00000 000 0000000 00000111000 0012222344444 44332
Q ss_pred HhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHh
Q 011531 240 LGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVN 319 (483)
Q Consensus 240 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~ 319 (483)
...++++++++||+...... ...|.....++++||||+||+.......++.+++++.+
T Consensus 195 ~~~~~~~~~~~Gp~~~~~~~----------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~ 252 (392)
T TIGR01426 195 GETFDDSFTFVGPCIGDRKE----------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRD 252 (392)
T ss_pred ccccCCCeEEECCCCCCccc----------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhc
Confidence 13455789999997643210 11266556778999999999877677788889999999
Q ss_pred CCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceecccc
Q 011531 320 RGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ 399 (483)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 399 (483)
.+.+++|...... . ...+. ..++| +.+.+|+||.++|+++++ +|||||+||+.||+++|+|+|++|.
T Consensus 253 ~~~~~i~~~g~~~--------~-~~~~~-~~~~~-v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~ 319 (392)
T TIGR01426 253 LDWHVVLSVGRGV--------D-PADLG-ELPPN-VEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQ 319 (392)
T ss_pred CCCeEEEEECCCC--------C-hhHhc-cCCCC-eEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCC
Confidence 9999998884210 0 11111 14455 999999999999987776 9999999999999999999999999
Q ss_pred ccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011531 400 FSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 400 ~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l 476 (483)
..||+.||+++++ +|+|..+. ..++++.|.++|.++|+| ++|+++++++++.+++. +| ...+.++|+.+
T Consensus 320 ~~dq~~~a~~l~~-~g~g~~l~~~~~~~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~---~~--~~~aa~~i~~~ 389 (392)
T TIGR01426 320 GADQPMTARRIAE-LGLGRHLPPEEVTAEKLREAVLAVLSD--PRYAERLRKMRAEIREA---GG--ARRAADEIEGF 389 (392)
T ss_pred cccHHHHHHHHHH-CCCEEEeccccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHc---CC--HHHHHHHHHHh
Confidence 9999999999965 89999998 689999999999999998 89999999999999875 44 34555655554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.2e-41 Score=342.39 Aligned_cols=379 Identities=17% Similarity=0.166 Sum_probs=240.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCccc-C----
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIR-S---- 82 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~-~---- 82 (483)
|||+|+++|+.||++|+++||++|++|||+|++++++.+...+.. . +++|..++...+..... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~----------G~~~~~~~~~~~~~~~~~~~~~~ 69 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-A----------GLEFVPVGGDPDELLASPERNAG 69 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-c----------CCceeeCCCCHHHHHhhhhhccc
Confidence 799999999999999999999999999999999999766555543 2 48888887543221100 0
Q ss_pred -----CCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHH
Q 011531 83 -----GLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYF 157 (483)
Q Consensus 83 -----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (483)
..........+.......+.++++.+++ .+||+||+|.+.++ +..+|+++|||++.+++++.....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~pDlvi~d~~~~~-~~~~A~~~giP~v~~~~~~~~~~~--- 140 (401)
T cd03784 70 LLLLGPGLLLGALRLLRREAEAMLDDLVAAARD-----WGPDLVVADPLAFA-GAVAAEALGIPAVRLLLGPDTPTS--- 140 (401)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCCEEEeCcHHHH-HHHHHHHhCCCeEEeecccCCccc---
Confidence 0111112222233333444444544432 68999999998888 999999999999999876543211
Q ss_pred hhhhhhhCCCCCCCCCCCCCCccccCCCCCC-ccCCCCCCccccCCCCChHHHHHHHHHhhhc------ccccEEEEecC
Q 011531 158 LLPKLVEDGHIPFPDENMEKPVAGIPGFENF-LRNRDLPGTCRVKTSDDDYLLQFFIGETFAM------TRASALILNTF 230 (483)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~s~ 230 (483)
..|... ...... ........+.. ...............- ......++...
T Consensus 141 ---------~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 197 (401)
T cd03784 141 ---------AFPPPL----------GRANLRLYALLEAELWQD----LLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS 197 (401)
T ss_pred ---------cCCCcc----------chHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCcccccCCCcEEEecC
Confidence 000000 000000 00000000000 0000011111111100 01111222111
Q ss_pred -CCCHHHHHHHhhccCcceeeCC-cccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCC-H
Q 011531 231 -EIEAPVVSLLGSHFTKIYTIGP-LHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLT-R 307 (483)
Q Consensus 231 -~l~~~~~~~~~~~~~~~~~vG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~-~ 307 (483)
.+.++ ..++.++..++|. +.....+ +..++++..|+++ ++++||||+||+.... .
T Consensus 198 ~~~~~~----~~~~~~~~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~ 255 (401)
T cd03784 198 PAVLPP----PPDWPRFDLVTGYGFRDVPYN----------------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPE 255 (401)
T ss_pred cccCCC----CCCccccCcEeCCCCCCCCCC----------------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHH
Confidence 11111 1334456667753 2221110 1234456667763 5788999999998744 4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHH
Q 011531 308 EQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEG 387 (483)
Q Consensus 308 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~ea 387 (483)
..+..++++++..+.++||+++.. .... ...++| +++.+|+||.++|+++++ ||||||+||++||
T Consensus 256 ~~~~~~~~a~~~~~~~~i~~~g~~--------~~~~----~~~~~~-v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~ea 320 (401)
T cd03784 256 ALARLDVEAVATLGQRAILSLGWG--------GLGA----EDLPDN-VRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAA 320 (401)
T ss_pred HHHHHHHHHHHHcCCeEEEEccCc--------cccc----cCCCCc-eEEeCCCCHHHHhhhhhe--eeecCCchhHHHH
Confidence 566789999999899999998432 1111 113455 999999999999977665 9999999999999
Q ss_pred HHhCCceeccccccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChH
Q 011531 388 IAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSY 466 (483)
Q Consensus 388 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 466 (483)
+++|||+|++|+..||+.||+++++ +|+|+.++ ..++++.|.++|.++|++ + ++++++++.+.+++. +| .
T Consensus 321 l~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~--~-~~~~~~~~~~~~~~~---~g--~ 391 (401)
T cd03784 321 LRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALDPRELTAERLAAALRRLLDP--P-SRRRAAALLRRIREE---DG--V 391 (401)
T ss_pred HHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCcccCCHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHhc---cC--H
Confidence 9999999999999999999999965 89999998 668999999999999995 4 566677777777654 44 4
Q ss_pred HHHHHHHHH
Q 011531 467 RNLDGLIED 475 (483)
Q Consensus 467 ~~~~~l~~~ 475 (483)
..+.++||.
T Consensus 392 ~~~~~~ie~ 400 (401)
T cd03784 392 PSAADVIER 400 (401)
T ss_pred HHHHHHHhh
Confidence 566666664
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.4e-41 Score=351.13 Aligned_cols=410 Identities=30% Similarity=0.438 Sum_probs=261.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhcccccccc--CCCCCeEEEeCCCCCCCCcccCCC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFC--NRFPNFQFRSIPSGLPANVIRSGL 84 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~f~~~p~~l~~~~~~~~~ 84 (483)
+.+++++++|+.||++|++.+|+.|+++||+||++++..+....... ...... .......+...++.++........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 67888999999999999999999999999999999986654443221 100000 000011111111222222211100
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcC-CCeEEEecchhHHHHHHHhhhhhh
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQ-IPLLALRTHNASYSWIYFLLPKLV 163 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~~~~~ 163 (483)
........+...+...+.+..+.+..... .++|++|+|.+..+ ...++...+ ||...+.+....... .+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~----~g~~~ 156 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKS--EKFDLIISDPFLGL-FLLLAIPSFVIPLLSFPTSSAVLLA----LGLPS 156 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhc--CCccEEEechhhHH-HHHhcccceEEEeecccCchHHHHh----cCCcC
Confidence 11111333444455555554544332111 34999999998666 666666664 888887776665433 45555
Q ss_pred hCCCCCCCCCCCC-CCccccCCCCCCccCCCCCCccccCCCC---ChHHHHHH--------HHHhhhcccccEEEEecC-
Q 011531 164 EDGHIPFPDENME-KPVAGIPGFENFLRNRDLPGTCRVKTSD---DDYLLQFF--------IGETFAMTRASALILNTF- 230 (483)
Q Consensus 164 ~~~~~p~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~l~~s~- 230 (483)
+.+|+|....... +.+.+..+..+ +....++..... ... ........ ........+.+..++|+.
T Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~ 234 (496)
T KOG1192|consen 157 PLSYVPSPFSLSSGDDMSFPERVPN-LIKKDLPSFLFS-LSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNP 234 (496)
T ss_pred cccccCcccCccccccCcHHHHHHH-HHHHHHHHHHHH-HhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCc
Confidence 5557776655322 33333333333 211111111100 000 00000000 011123355567778887
Q ss_pred CCCHHHHHHHhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCC--eEEEEecCccc---CC
Q 011531 231 EIEAPVVSLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPK--SVLYVSFGSLV---GL 305 (483)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vi~vs~Gs~~---~~ 305 (483)
.++.+ .++..+++++|||++...... +. ..+.+|++..+.. +||||||||++ .+
T Consensus 235 ~~~~~----~~~~~~~v~~IG~l~~~~~~~---------------~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 235 LLDFE----PRPLLPKVIPIGPLHVKDSKQ---------------KS--PLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred ccCCC----CCCCCCCceEECcEEecCccc---------------cc--cccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 44441 155678999999999763211 01 1245576655444 89999999999 69
Q ss_pred CHHHHHHHHHHHHhC-CCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHH-hccCCccceeeccCchh
Q 011531 306 TREQMSELWHGLVNR-GQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEV-LAHPAVGGFLTHGGWNS 383 (483)
Q Consensus 306 ~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-l~~~~~~~~ItHgG~gs 383 (483)
+.+....++.+++.+ +..|+|+++..... .+++++.++.++| |.+.+|+||.++ |.|+++++||||||+||
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~n-V~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGN-VVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcch------hhhhcCCCCCcCc-eEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 999999999999999 88899999753211 1223333222344 999999999998 59999999999999999
Q ss_pred HHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011531 384 TLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARD 457 (483)
Q Consensus 384 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~ 457 (483)
++|++++|||+|++|+++||+.||++++++ |.|..+. .+.+.+.+.+++.+++++ ++|+++++++++.+++
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILRD 438 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999874 5555554 566666699999999999 9999999999999875
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-40 Score=324.69 Aligned_cols=389 Identities=18% Similarity=0.234 Sum_probs=245.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCC-CCCCcccCCCC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSG-LPANVIRSGLT 85 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~-l~~~~~~~~~~ 85 (483)
+|||+|+..|+.||++|+++||++|.++||+|++++++.+.+.+.+. ++.|..++.. .+........+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a-----------g~~f~~~~~~~~~~~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA-----------GLAFVAYPIRDSELATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh-----------CcceeeccccCChhhhhhhhhh
Confidence 58999999999999999999999999999999999998888888775 3566666643 11111101111
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhhC
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVED 165 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (483)
....+......+.....++++-+.+ ..+|+|+.|...+. + .+++..++|++.............. .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 135 (406)
T COG1819 70 GVKSFRRLLQQFKKLIRELLELLRE-----LEPDLVVDDARLSL-G-LAARLLGIPVVGINVAPYTPLPAAG---L---- 135 (406)
T ss_pred ccchhHHHhhhhhhhhHHHHHHHHh-----cchhhhhcchhhhh-h-hhhhhcccchhhhhhhhccCCcccc---c----
Confidence 1111110222233333444444443 57999999976655 4 8999999999886554332111100 0
Q ss_pred CCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCC-ChHHHHHHHH-------HhhhcccccEEEEecC--CCCHH
Q 011531 166 GHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSD-DDYLLQFFIG-------ETFAMTRASALILNTF--EIEAP 235 (483)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~l~~s~--~l~~~ 235 (483)
..++....+.. .....+ +......+.... ... .....+.... ..+.........+... .+.+.
T Consensus 136 ~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
T COG1819 136 PLPPVGIAGKL-PIPLYP-----LPPRLVRPLIFA-RSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG 208 (406)
T ss_pred Ccccccccccc-cccccc-----cChhhccccccc-hhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC
Confidence 00011100000 000000 000000000000 000 0000000000 0000001111111111 01000
Q ss_pred HHHHHhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHH
Q 011531 236 VVSLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWH 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~ 315 (483)
+..+....++||+...... +...|. ..++++||||+||.... .+++..+++
T Consensus 209 -----~~~p~~~~~~~~~~~~~~~---------------------~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~ 259 (406)
T COG1819 209 -----DRLPFIGPYIGPLLGEAAN---------------------ELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLE 259 (406)
T ss_pred -----CCCCCCcCccccccccccc---------------------cCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHH
Confidence 1223345566665543221 122242 45688999999999977 888999999
Q ss_pred HHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCcee
Q 011531 316 GLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMI 395 (483)
Q Consensus 316 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l 395 (483)
++..++.++|..... .. ....+ .++| +++.+|+||.++|+++++ ||||||+||++|||++|||+|
T Consensus 260 a~~~l~~~vi~~~~~-~~------~~~~~-----~p~n-~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~v 324 (406)
T COG1819 260 ALADLDVRVIVSLGG-AR------DTLVN-----VPDN-VIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLV 324 (406)
T ss_pred HHhcCCcEEEEeccc-cc------ccccc-----CCCc-eEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEE
Confidence 999999999988832 00 01111 4555 999999999999977776 999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011531 396 CWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIE 474 (483)
Q Consensus 396 ~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~ 474 (483)
++|...||+.||.|++ +.|+|..+. +.++.+.|+++|+++|.+ +.|+++++++++.++.+ +| .+.+.++||
T Consensus 325 v~P~~~DQ~~nA~rve-~~G~G~~l~~~~l~~~~l~~av~~vL~~--~~~~~~~~~~~~~~~~~---~g--~~~~a~~le 396 (406)
T COG1819 325 VIPDGADQPLNAERVE-ELGAGIALPFEELTEERLRAAVNEVLAD--DSYRRAAERLAEEFKEE---DG--PAKAADLLE 396 (406)
T ss_pred EecCCcchhHHHHHHH-HcCCceecCcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhc---cc--HHHHHHHHH
Confidence 9999999999999996 489999998 799999999999999999 99999999999999997 65 667888888
Q ss_pred HHHHh
Q 011531 475 DIRLM 479 (483)
Q Consensus 475 ~l~~~ 479 (483)
++...
T Consensus 397 ~~~~~ 401 (406)
T COG1819 397 EFARE 401 (406)
T ss_pred HHHhc
Confidence 86543
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=7.4e-24 Score=207.37 Aligned_cols=318 Identities=18% Similarity=0.225 Sum_probs=193.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh-hhhhccccccccCCCCCeEEEeCCC-CCCCCcccCCCCH
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD-LLLRNTDITSFCNRFPNFQFRSIPS-GLPANVIRSGLTA 86 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~f~~~p~-~l~~~~~~~~~~~ 86 (483)
||++.+.||.||++|.++||++|.++||+|.+++++.-.+ .+... .++.+..++. ++.. ...+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~----------~g~~~~~~~~~~l~~-----~~~~ 67 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK----------ENIPYYSISSGKLRR-----YFDL 67 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc----------cCCcEEEEeccCcCC-----CchH
Confidence 7999999999999999999999999999999999754322 12111 1466666652 1211 1111
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC--cchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhh
Q 011531 87 KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC--FLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVE 164 (483)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (483)
. .+......... +...+.-+++ .+||+|+...... . +..+|..+++|++.+..
T Consensus 68 ~-~~~~~~~~~~~-~~~~~~i~~~-----~kPdvvi~~Ggy~s~p-~~~aa~~~~~p~~i~e~----------------- 122 (352)
T PRK12446 68 K-NIKDPFLVMKG-VMDAYVRIRK-----LKPDVIFSKGGFVSVP-VVIGGWLNRVPVLLHES----------------- 122 (352)
T ss_pred H-HHHHHHHHHHH-HHHHHHHHHh-----cCCCEEEecCchhhHH-HHHHHHHcCCCEEEECC-----------------
Confidence 1 11111111111 1122222332 6899999986433 2 47899999999988622
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecCCCCHHHHHHHhhcc
Q 011531 165 DGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTFEIEAPVVSLLGSHF 244 (483)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~l~~~~~~~~~~~~ 244 (483)
+.++++.|. ... +..+.++ .+| +.. ...+
T Consensus 123 ---------------n~~~g~~nr-------------------~~~---------~~a~~v~-~~f--~~~-----~~~~ 151 (352)
T PRK12446 123 ---------------DMTPGLANK-------------------IAL---------RFASKIF-VTF--EEA-----AKHL 151 (352)
T ss_pred ---------------CCCccHHHH-------------------HHH---------HhhCEEE-EEc--cch-----hhhC
Confidence 122222220 000 1111122 222 111 1111
Q ss_pred --CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCH-HHHHHHHHHHHhCC
Q 011531 245 --TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTR-EQMSELWHGLVNRG 321 (483)
Q Consensus 245 --~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~-~~~~~~~~a~~~~~ 321 (483)
.+++++|+...+.-. . ...+...+.+.-.+++++|+|..||...... +.+..++..+.. +
T Consensus 152 ~~~k~~~tG~Pvr~~~~------------~----~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~ 214 (352)
T PRK12446 152 PKEKVIYTGSPVREEVL------------K----GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-K 214 (352)
T ss_pred CCCCeEEECCcCCcccc------------c----ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-C
Confidence 367788864432110 0 0011111112223457899999999987554 334455555532 4
Q ss_pred CeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEecc-C-HHHHhccCCccceeeccCchhHHHHHHhCCceecccc
Q 011531 322 QRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWA-P-QEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ 399 (483)
Q Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~-p-~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 399 (483)
.+++|+++.+. +..... . ..+ +.+.+|+ + ..++|+++++ +|||||.+|+.|++++|+|+|++|+
T Consensus 215 ~~vv~~~G~~~---------~~~~~~-~-~~~-~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~ 280 (352)
T PRK12446 215 YQIVHLCGKGN---------LDDSLQ-N-KEG-YRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPL 280 (352)
T ss_pred cEEEEEeCCch---------HHHHHh-h-cCC-cEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcC
Confidence 78899884321 111111 1 123 6667887 4 5679988887 9999999999999999999999998
Q ss_pred c-----cchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011531 400 F-----SDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDR 450 (483)
Q Consensus 400 ~-----~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~ 450 (483)
. .||..||+.+++ .|+|..+. ++++++.|.+++.++++|. +.+++++++
T Consensus 281 ~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~~~~~~~l~~~l~~ll~~~-~~~~~~~~~ 335 (352)
T PRK12446 281 SKFASRGDQILNAESFER-QGYASVLYEEDVTVNSLIKHVEELSHNN-EKYKTALKK 335 (352)
T ss_pred CCCCCCchHHHHHHHHHH-CCCEEEcchhcCCHHHHHHHHHHHHcCH-HHHHHHHHH
Confidence 5 489999999976 89999987 7899999999999999861 345544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=3.1e-23 Score=201.96 Aligned_cols=307 Identities=19% Similarity=0.247 Sum_probs=186.3
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCH
Q 011531 8 PHVVLLPYP-LQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTA 86 (483)
Q Consensus 8 ~~il~~~~~-~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~ 86 (483)
|||+|...+ +.||+.+.++|+++| |||+|++++.....+.+... +....+++-..... ....+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------------FPVREIPGLGPIQE-NGRLDR 65 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------------cCEEEccCceEecc-CCccch
Confidence 789888876 889999999999999 59999999986554333221 33444443111111 112222
Q ss_pred HHHHHHHHH---hchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhh
Q 011531 87 KDVFDAMKA---VSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLV 163 (483)
Q Consensus 87 ~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (483)
......... .....++++++.+++ .+||+||+|. .+. +..+|+..|||++.+.........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~pDlVIsD~-~~~-~~~aa~~~giP~i~i~~~~~~~~~--------- 129 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLRE-----FRPDLVISDF-YPL-AALAARRAGIPVIVISNQYWFLHP--------- 129 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEcC-hHH-HHHHHHhcCCCEEEEEehHHcccc---------
Confidence 222222211 123344455555544 7899999994 455 688999999999998664322100
Q ss_pred hCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecCCCCHHHHHHHhhc
Q 011531 164 EDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTFEIEAPVVSLLGSH 243 (483)
Q Consensus 164 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~l~~~~~~~~~~~ 243 (483)
+ ..++ . ..........+.... .....+..+.-++. .+ ...
T Consensus 130 -----------------------~----~~~~----~-~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~--~~-----~~~ 169 (318)
T PF13528_consen 130 -----------------------N----FWLP----W-DQDFGRLIERYIDRY-HFPPADRRLALSFY--PP-----LPP 169 (318)
T ss_pred -----------------------c----CCcc----h-hhhHHHHHHHhhhhc-cCCcccceecCCcc--cc-----ccc
Confidence 0 0000 0 000011111111110 01222233322221 11 111
Q ss_pred cCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHhCC-C
Q 011531 244 FTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRG-Q 322 (483)
Q Consensus 244 ~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~-~ 322 (483)
..+..++||+..+.... .. ..+++.|+|++|..... .++++++..+ +
T Consensus 170 ~~~~~~~~p~~~~~~~~------------------------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~ 217 (318)
T PF13528_consen 170 FFRVPFVGPIIRPEIRE------------------------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDY 217 (318)
T ss_pred cccccccCchhcccccc------------------------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCC
Confidence 23466778776432210 11 12456699999987643 5566776666 4
Q ss_pred eEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEecc--CHHHHhccCCccceeeccCchhHHHHHHhCCceecccc-
Q 011531 323 RFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWA--PQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ- 399 (483)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~--p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~- 399 (483)
++++. +... . + ...+ |+.+.++. ...++|+.+++ +|||||.||++|++++|+|+|++|.
T Consensus 218 ~~~v~-g~~~--------~--~----~~~~-ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~ 279 (318)
T PF13528_consen 218 QFIVF-GPNA--------A--D----PRPG-NIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRP 279 (318)
T ss_pred eEEEE-cCCc--------c--c----ccCC-CEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCC
Confidence 55544 3211 0 0 0234 49999876 46779966666 9999999999999999999999999
Q ss_pred -ccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHH
Q 011531 400 -FSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDL 436 (483)
Q Consensus 400 -~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~l 436 (483)
..||..||+++. ++|+|..++ ++++++.|+++|.++
T Consensus 280 ~~~EQ~~~a~~l~-~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 280 GQDEQEYNARKLE-ELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CCchHHHHHHHHH-HCCCeEEcccccCCHHHHHHHHhcC
Confidence 789999999996 599999998 899999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.6e-21 Score=187.10 Aligned_cols=337 Identities=19% Similarity=0.208 Sum_probs=209.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCc-EEEEEeCCCchh-hhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANF-QVTFVNTDHNHD-LLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLT 85 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH-~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~ 85 (483)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+ .+.. ..++.+..++..-..... ....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~----------~~~~~~~~I~~~~~~~~~-~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK----------QYGIEFELIPSGGLRRKG-SLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc----------ccCceEEEEecccccccC-cHHH
Confidence 57899999999999999999999999999 588776643322 2222 224677777632222111 1111
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC--cchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhh
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC--FLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLV 163 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (483)
....+..+. .....+.++++ .+||+||....++ . +..+|..+|||++.+
T Consensus 70 ~~~~~~~~~--~~~~a~~il~~--------~kPd~vig~Ggyvs~P-~~~Aa~~~~iPv~ih------------------ 120 (357)
T COG0707 70 LKAPFKLLK--GVLQARKILKK--------LKPDVVIGTGGYVSGP-VGIAAKLLGIPVIIH------------------ 120 (357)
T ss_pred HHHHHHHHH--HHHHHHHHHHH--------cCCCEEEecCCccccH-HHHHHHhCCCCEEEE------------------
Confidence 121222111 11223455555 6899999976654 4 566888899999997
Q ss_pred hCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHHHhh
Q 011531 164 EDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSLLGS 242 (483)
Q Consensus 164 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~~~~ 242 (483)
..+..+++.|.+..+. ++. +..+| .. ..
T Consensus 121 --------------Eqn~~~G~ank~~~~~----------------------------a~~-V~~~f~~~--------~~ 149 (357)
T COG0707 121 --------------EQNAVPGLANKILSKF----------------------------AKK-VASAFPKL--------EA 149 (357)
T ss_pred --------------ecCCCcchhHHHhHHh----------------------------hce-eeeccccc--------cc
Confidence 3445555555111100 001 11122 10 11
Q ss_pred cc--CcceeeCC-cccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCH-HHHHHHHHHHH
Q 011531 243 HF--TKIYTIGP-LHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTR-EQMSELWHGLV 318 (483)
Q Consensus 243 ~~--~~~~~vG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~-~~~~~~~~a~~ 318 (483)
.. .+.+.+|- +...... .+ ...+ .... ..++++|+|.-||.....- +.+..+...+.
T Consensus 150 ~~~~~~~~~tG~Pvr~~~~~-----------~~------~~~~-~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~ 210 (357)
T COG0707 150 GVKPENVVVTGIPVRPEFEE-----------LP------AAEV-RKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLA 210 (357)
T ss_pred cCCCCceEEecCcccHHhhc-----------cc------hhhh-hhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhh
Confidence 11 24666764 3322110 00 0001 1111 2267899999999986443 33444555555
Q ss_pred hCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCc-eeEEeccCH-HHHhccCCccceeeccCchhHHHHHHhCCceec
Q 011531 319 NRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERN-RFIVSWAPQ-EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMIC 396 (483)
Q Consensus 319 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~~p~-~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~ 396 (483)
+ +.++++..+.+ . ...........| +.+.+|+.. ..+|+.+++ +||++|.+|+.|++++|+|.|.
T Consensus 211 ~-~~~v~~~~G~~--------~--~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~Il 277 (357)
T COG0707 211 N-RIQVIHQTGKN--------D--LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAIL 277 (357)
T ss_pred h-CeEEEEEcCcc--------h--HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEE
Confidence 4 56888877432 1 122222222223 666788885 669988887 9999999999999999999999
Q ss_pred cccc----cchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011531 397 WPQF----SDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDG 471 (483)
Q Consensus 397 ~P~~----~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 471 (483)
+|.- .||..||..+++ .|.|..++ .+++.+.+.+.|.+++++ .++.++|++..++. +. .++.++
T Consensus 278 iP~p~~~~~~Q~~NA~~l~~-~gaa~~i~~~~lt~~~l~~~i~~l~~~-----~~~l~~m~~~a~~~---~~--p~aa~~ 346 (357)
T COG0707 278 VPYPPGADGHQEYNAKFLEK-AGAALVIRQSELTPEKLAELILRLLSN-----PEKLKAMAENAKKL---GK--PDAAER 346 (357)
T ss_pred eCCCCCccchHHHHHHHHHh-CCCEEEeccccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHhc---CC--CCHHHH
Confidence 9973 389999999975 89999998 789999999999999985 46677777777775 33 344555
Q ss_pred HHHHHHH
Q 011531 472 LIEDIRL 478 (483)
Q Consensus 472 l~~~l~~ 478 (483)
+++.+..
T Consensus 347 i~~~~~~ 353 (357)
T COG0707 347 IADLLLA 353 (357)
T ss_pred HHHHHHH
Confidence 5554444
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=8.4e-21 Score=184.54 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=86.5
Q ss_pred CCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccC--HHHHhc
Q 011531 291 PKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAP--QEEVLA 368 (483)
Q Consensus 291 ~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p--~~~ll~ 368 (483)
+++.|+|.+|+.. ...++++++..+. +.|++... ..... ..++| +.+.+|.| ..++|.
T Consensus 187 ~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~--------~~~~~----~~~~~-v~~~~~~~~~~~~~l~ 246 (321)
T TIGR00661 187 GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY--------EVAKN----SYNEN-VEIRRITTDNFKELIK 246 (321)
T ss_pred CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC--------CCCcc----ccCCC-EEEEECChHHHHHHHH
Confidence 3456888888754 2345677766653 33333111 01111 12344 99999997 456775
Q ss_pred cCCccceeeccCchhHHHHHHhCCceecccccc--chhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhH
Q 011531 369 HPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFS--DQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 369 ~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~ 439 (483)
.++ ++|||||.+|+.||+++|+|++++|..+ ||..||+.+++ .|+|+.++ .++ ++.+++.++++|
T Consensus 247 ~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~~~~~~~~~~~~ 314 (321)
T TIGR00661 247 NAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---RLLEAILDIRNM 314 (321)
T ss_pred hCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---HHHHHHHhcccc
Confidence 555 5999999999999999999999999965 89999999965 89999997 444 666677666666
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.78 E-value=1.3e-16 Score=157.86 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=77.7
Q ss_pred eeEEeccC-HHHHhccCCccceeeccCchhHHHHHHhCCceecccc----ccchhHHHHHHHHhhccceecC-CCCCHHH
Q 011531 355 RFIVSWAP-QEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ----FSDQLVNSRCVSEVWKIGFDMK-DTCDGSI 428 (483)
Q Consensus 355 v~~~~~~p-~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~ 428 (483)
+.+.+|+. ..+++..+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+ .|.|..++ +.++++.
T Consensus 237 v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~ 313 (357)
T PRK00726 237 AEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEK 313 (357)
T ss_pred EEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHH
Confidence 78889984 5789977776 9999999999999999999999997 4689999999976 79999997 6778999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHH
Q 011531 429 IEKLVRDLMENKREEIMGSTDR 450 (483)
Q Consensus 429 l~~~i~~ll~~~~~~~~~~a~~ 450 (483)
|+++|.+++++ +.++++..+
T Consensus 314 l~~~i~~ll~~--~~~~~~~~~ 333 (357)
T PRK00726 314 LAEKLLELLSD--PERLEAMAE 333 (357)
T ss_pred HHHHHHHHHcC--HHHHHHHHH
Confidence 99999999997 665544333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.72 E-value=1.3e-15 Score=150.42 Aligned_cols=324 Identities=19% Similarity=0.175 Sum_probs=181.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCC-CCCCcccCCCCHH
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSG-LPANVIRSGLTAK 87 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~-l~~~~~~~~~~~~ 87 (483)
+|++.+.++.||+...+.|++.|.++||+|++++...... . .. ....++++..++-. ..... ....+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RL-------VPKAGIPLHTIPVGGLRRKG--SLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hc-------ccccCCceEEEEecCcCCCC--hHHHHH
Confidence 5899999999999999999999999999999998743211 0 00 01113566555521 11110 000111
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC-cchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhhCC
Q 011531 88 DVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC-FLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVEDG 166 (483)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~-~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (483)
..+.... ....+..++++ .+||+|+++.... ..+..+|...++|++.....
T Consensus 70 ~~~~~~~--~~~~~~~~i~~--------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------ 121 (350)
T cd03785 70 APFKLLK--GVLQARKILKK--------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------ 121 (350)
T ss_pred HHHHHHH--HHHHHHHHHHh--------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------
Confidence 1111111 11123333433 6899999875332 21567788899999863110
Q ss_pred CCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHHHHHHHhhccC
Q 011531 167 HIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAPVVSLLGSHFT 245 (483)
Q Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~~~~~~~~~~~ 245 (483)
.+++. .+.. .....+.++..+. ..+. -...
T Consensus 122 --------------~~~~~-----------------------~~~~-----~~~~~~~vi~~s~~~~~~-------~~~~ 152 (350)
T cd03785 122 --------------AVPGL-----------------------ANRL-----LARFADRVALSFPETAKY-------FPKD 152 (350)
T ss_pred --------------CCccH-----------------------HHHH-----HHHhhCEEEEcchhhhhc-------CCCC
Confidence 00000 0000 0012333333332 1110 0113
Q ss_pred cceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCC-HHHHHHHHHHHHhCCCeE
Q 011531 246 KIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLT-REQMSELWHGLVNRGQRF 324 (483)
Q Consensus 246 ~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~ 324 (483)
++.++|........ ...+. ...+...+++.+|++..|+..... .+.+..++..+...+..+
T Consensus 153 ~~~~i~n~v~~~~~-----------------~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~ 214 (350)
T cd03785 153 KAVVTGNPVREEIL-----------------ALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQV 214 (350)
T ss_pred cEEEECCCCchHHh-----------------hhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEE
Confidence 56666653321110 00000 111221234556767666654321 122333444444333445
Q ss_pred EEEEcCCccCCCCCCCCCChhhhhhc---CCCceeEEecc-CHHHHhccCCccceeeccCchhHHHHHHhCCceecccc-
Q 011531 325 LLVVRPDLILGEPGAAETPLAQNEGT---EERNRFIVSWA-PQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ- 399 (483)
Q Consensus 325 i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nv~~~~~~-p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~- 399 (483)
++.++. | ..+.+.+.. .++ +.+.+|+ ....+|+.+++ +|+++|.+|+.||+++|+|+|++|.
T Consensus 215 ~~i~G~------g----~~~~l~~~~~~~~~~-v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~ 281 (350)
T cd03785 215 IHQTGK------G----DLEEVKKAYEELGVN-YEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLP 281 (350)
T ss_pred EEEcCC------c----cHHHHHHHHhccCCC-eEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecC
Confidence 556632 1 112222222 234 9999998 46779977776 9999999999999999999999986
Q ss_pred ---ccchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011531 400 ---FSDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARD 457 (483)
Q Consensus 400 ---~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~ 457 (483)
..+|..|+..+.+ .|.|..++ ...+.+++.++|.+++++ +..+ ++|++..++
T Consensus 282 ~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i~~ll~~--~~~~---~~~~~~~~~ 337 (350)
T cd03785 282 YAADDHQTANARALVK-AGAAVLIPQEELTPERLAAALLELLSD--PERL---KAMAEAARS 337 (350)
T ss_pred CCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHHHHHHhcC--HHHH---HHHHHHHHh
Confidence 4679999999976 79999987 457999999999999986 4433 344444444
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.66 E-value=1.3e-13 Score=136.10 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=72.2
Q ss_pred CHHHHhccCCccceeeccCchhHHHHHHhCCceeccccc---cchhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHH
Q 011531 362 PQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQF---SDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLM 437 (483)
Q Consensus 362 p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll 437 (483)
....+|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+.+ .|.|..++ +..+.+.|.++|.+++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEecccCCHHHHHHHHHHHH
Confidence 56778977777 99999988999999999999999863 478889988865 79999887 6678999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 011531 438 ENKREEIMGSTDRVATMARDA 458 (483)
Q Consensus 438 ~~~~~~~~~~a~~l~~~~~~~ 458 (483)
+| ++. .++|++..++.
T Consensus 320 ~~--~~~---~~~~~~~~~~~ 335 (348)
T TIGR01133 320 LD--PAN---LEAMAEAARKL 335 (348)
T ss_pred cC--HHH---HHHHHHHHHhc
Confidence 87 543 34555555553
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.64 E-value=2.1e-14 Score=142.74 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=103.0
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhC-----CCeEEEEEcCCccCCCCCCCCCChhhhh---hcCCC-ceeEEec
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNR-----GQRFLLVVRPDLILGEPGAAETPLAQNE---GTEER-NRFIVSW 360 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-nv~~~~~ 360 (483)
.++++|.+..||....-......++++++.+ +.++++..... .....+.+ ....+ .+.+..+
T Consensus 189 ~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~ 259 (385)
T TIGR00215 189 HNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF---------KRRLQFEQIKAEYGPDLQLHLIDG 259 (385)
T ss_pred CCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc---------hhHHHHHHHHHHhCCCCcEEEECc
Confidence 4567888888887643233344455554432 23444433110 11112211 11111 1433322
Q ss_pred cCHHHHhccCCccceeeccCchhHHHHHHhCCceecc----cccc---------chhHHHHHHHHhhccceecC-CCCCH
Q 011531 361 APQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW----PQFS---------DQLVNSRCVSEVWKIGFDMK-DTCDG 426 (483)
Q Consensus 361 ~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~----P~~~---------DQ~~na~~v~~~~G~G~~l~-~~~~~ 426 (483)
....+|+.+++ +|+-+|..|+ |++++|+|+|++ |+.. .|..|+..+++ .++...+- +.+++
T Consensus 260 -~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~~~~ 334 (385)
T TIGR00215 260 -DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEECTP 334 (385)
T ss_pred -hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCCCCH
Confidence 34568877777 9999999988 999999999999 7632 27779999975 68888866 78999
Q ss_pred HHHHHHHHHHHhHhHH----HHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011531 427 SIIEKLVRDLMENKRE----EIMGSTDRVATMARDAVNEGGSSYRNLDGLI 473 (483)
Q Consensus 427 ~~l~~~i~~ll~~~~~----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~ 473 (483)
+.|.+.+.++|+| + +++++.++--+.+++...++|.+..+.+.++
T Consensus 335 ~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 335 HPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred HHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999999999987 5 4444443333333333344555555555444
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=1.9e-13 Score=136.45 Aligned_cols=146 Identities=15% Similarity=0.222 Sum_probs=99.3
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhC-CCeEEEEEcCCccCCCCCCCCCChhhhh---hcCCCceeEEeccCH-H
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNR-GQRFLLVVRPDLILGEPGAAETPLAQNE---GTEERNRFIVSWAPQ-E 364 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~p~-~ 364 (483)
+++++|++..|+.... ..+..+++++... +.+++++.+.+ ..+.+.+.+ ..+++ +.+.+|+++ .
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~--------~~~~~~l~~~~~~~~~~-v~~~g~~~~~~ 268 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN--------EALKQSLEDLQETNPDA-LKVFGYVENID 268 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC--------HHHHHHHHHHHhcCCCc-EEEEechhhHH
Confidence 3456777777876532 1244566666543 45666665321 111122221 12234 999999986 5
Q ss_pred HHhccCCccceeeccCchhHHHHHHhCCceecc-ccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHH
Q 011531 365 EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW-PQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREE 443 (483)
Q Consensus 365 ~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~ 443 (483)
.+++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+.. .+.+.+.++|.++++| ++
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~---~~~~~l~~~i~~ll~~--~~ 340 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI---RDDEEVFAKTEALLQD--DM 340 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE---CCHHHHHHHHHHHHCC--HH
Confidence 79988887 99999988999999999999985 666778889988854 7988865 3679999999999987 54
Q ss_pred HHHHHHHHHHHHHH
Q 011531 444 IMGSTDRVATMARD 457 (483)
Q Consensus 444 ~~~~a~~l~~~~~~ 457 (483)
.+ ++|++..++
T Consensus 341 ~~---~~m~~~~~~ 351 (380)
T PRK13609 341 KL---LQMKEAMKS 351 (380)
T ss_pred HH---HHHHHHHHH
Confidence 43 344444444
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=121.09 Aligned_cols=333 Identities=14% Similarity=0.157 Sum_probs=193.5
Q ss_pred CCCEEEEEcCC--CCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCC---
Q 011531 6 VNPHVVLLPYP--LQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPAN--- 78 (483)
Q Consensus 6 ~~~~il~~~~~--~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~--- 78 (483)
+.+||+|++.- +.||+...+.||..|.+. |.+|++++.......+ ....+++|+.+|.-....
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F----------~~~~gVd~V~LPsl~k~~~G~ 77 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF----------PGPAGVDFVKLPSLIKGDNGE 77 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC----------CCcccCceEecCceEecCCCc
Confidence 45699999984 779999999999999998 9999999975443222 222369999999532221
Q ss_pred --cccCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHH
Q 011531 79 --VIRSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIY 156 (483)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~ 156 (483)
..+...+.. .+.+.-...+ +..... .+||++|+|.+.+ | ...+.+ ++..+
T Consensus 78 ~~~~d~~~~l~----e~~~~Rs~li---l~t~~~-----fkPDi~IVd~~P~--G-lr~EL~-------------ptL~y 129 (400)
T COG4671 78 YGLVDLDGDLE----ETKKLRSQLI---LSTAET-----FKPDIFIVDKFPF--G-LRFELL-------------PTLEY 129 (400)
T ss_pred eeeeecCCCHH----HHHHHHHHHH---HHHHHh-----cCCCEEEEecccc--c-hhhhhh-------------HHHHH
Confidence 111222222 2222111122 233322 7899999997644 4 111111 01111
Q ss_pred HhhhhhhhCCCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecC-CCCHH
Q 011531 157 FLLPKLVEDGHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTF-EIEAP 235 (483)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~l~~~ 235 (483)
.. ...+ .. +-++ ...++.+..... .++.....+.+. +.-+.+++.-. .|..+
T Consensus 130 l~-----------~~~t----~~--vL~l---r~i~D~p~~~~~-~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~ 182 (400)
T COG4671 130 LK-----------TTGT----RL--VLGL---RSIRDIPQELEA-DWRRAETVRLIN------RFYDLVLVYGDPDFYDP 182 (400)
T ss_pred Hh-----------hcCC----cc--eeeh---Hhhhhchhhhcc-chhhhHHHHHHH------HhheEEEEecCccccCh
Confidence 10 0000 00 0000 112222222222 222222222222 33345666555 44322
Q ss_pred HH--HHHhhccCcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHH
Q 011531 236 VV--SLLGSHFTKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSEL 313 (483)
Q Consensus 236 ~~--~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~ 313 (483)
.. ++....-.++.|+|.+....+.. +.+ |.. .+.+.-|+||-|... .-.+++...
T Consensus 183 ~~~~~~~~~i~~k~~ytG~vq~~~~~~---------~~p------------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~ 239 (400)
T COG4671 183 LTEFPFAPAIRAKMRYTGFVQRSLPHL---------PLP------------PHE-APEGFDILVSVGGGA-DGAELIETA 239 (400)
T ss_pred hhcCCccHhhhhheeEeEEeeccCcCC---------CCC------------CcC-CCccceEEEecCCCh-hhHHHHHHH
Confidence 21 12233446899999983211110 111 111 144456889888654 345666666
Q ss_pred HHHHHh-CCCeEEEEEcCCccCCCCCCCCCChhhhhh----cC--CCceeEEeccCH-HHHhccCCccceeeccCchhHH
Q 011531 314 WHGLVN-RGQRFLLVVRPDLILGEPGAAETPLAQNEG----TE--ERNRFIVSWAPQ-EEVLAHPAVGGFLTHGGWNSTL 385 (483)
Q Consensus 314 ~~a~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~nv~~~~~~p~-~~ll~~~~~~~~ItHgG~gs~~ 385 (483)
++|-.. .+.+-.|.+-. |. ..|....++ .+ .+ +.+..|-.+ ..+++.++. +|+-||+||+.
T Consensus 240 l~A~~~l~~l~~~~~ivt------GP--~MP~~~r~~l~~~A~~~p~-i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvC 308 (400)
T COG4671 240 LAAAQLLAGLNHKWLIVT------GP--FMPEAQRQKLLASAPKRPH-ISIFEFRNDFESLLAGARL--VVSMGGYNTVC 308 (400)
T ss_pred HHHhhhCCCCCcceEEEe------CC--CCCHHHHHHHHHhcccCCC-eEEEEhhhhHHHHHHhhhe--eeecccchhhh
Confidence 666554 34453454421 22 344444332 23 34 999999875 668977776 99999999999
Q ss_pred HHHHhCCceecccccc---chhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHh
Q 011531 386 EGIAAGVPMICWPQFS---DQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLME 438 (483)
Q Consensus 386 eal~~GvP~l~~P~~~---DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~ 438 (483)
|-|.+|+|.|++|... +|-.-|.|+++ +|+--.+. +.+++..++++|...+.
T Consensus 309 eILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 309 EILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 9999999999999864 89999999965 99998887 88999999999999887
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.54 E-value=9.1e-13 Score=125.00 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=74.2
Q ss_pred eEEEEecCcccCCCHHHHHHHHHHHHhC--CCeEEEEEcCCccCCCCCCCCCChhhhhh--cCCCceeEEeccCH-HHHh
Q 011531 293 SVLYVSFGSLVGLTREQMSELWHGLVNR--GQRFLLVVRPDLILGEPGAAETPLAQNEG--TEERNRFIVSWAPQ-EEVL 367 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~-~~ll 367 (483)
+.|+|+||..-... ....+++++... +.++.++++. .....+.+.+. ...| +.+..++++ ..+|
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~--------~~~~~~~l~~~~~~~~~-i~~~~~~~~m~~lm 239 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGS--------SNPNLDELKKFAKEYPN-IILFIDVENMAELM 239 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECC--------CCcCHHHHHHHHHhCCC-EEEEeCHHHHHHHH
Confidence 56899998655422 344566666553 4467777732 22222333322 2234 999999997 4799
Q ss_pred ccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHH
Q 011531 368 AHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRC 409 (483)
Q Consensus 368 ~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 409 (483)
+.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 88887 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.52 E-value=2.1e-12 Score=129.07 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=54.1
Q ss_pred HHHHhccCCccceeeccCchhHHHHHHhCCceecccccc--------chhHH-----HHHHHHhhccceecC-CCCCHHH
Q 011531 363 QEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFS--------DQLVN-----SRCVSEVWKIGFDMK-DTCDGSI 428 (483)
Q Consensus 363 ~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~-~~~~~~~ 428 (483)
-..+++.+++ +|+.+|.+++ ||+++|+|+|++|-.. .|..| +..+.+ .+++..+. ...+++.
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 330 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEEATPEK 330 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCCCCHHH
Confidence 4668877777 9999999887 9999999999985432 12222 223322 23333333 6789999
Q ss_pred HHHHHHHHHhHhHHHHHH
Q 011531 429 IEKLVRDLMENKREEIMG 446 (483)
Q Consensus 429 l~~~i~~ll~~~~~~~~~ 446 (483)
|.++|.++++| ++.++
T Consensus 331 l~~~i~~ll~~--~~~~~ 346 (380)
T PRK00025 331 LARALLPLLAD--GARRQ 346 (380)
T ss_pred HHHHHHHHhcC--HHHHH
Confidence 99999999997 55444
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.46 E-value=5.6e-11 Score=118.85 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=108.6
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHH-Hh-CCCeEEEEEcCCccCCCCCCCCCChhhhhh--cCCCceeEEeccCH-H
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGL-VN-RGQRFLLVVRPDLILGEPGAAETPLAQNEG--TEERNRFIVSWAPQ-E 364 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~-~ 364 (483)
+++++|++..|+.... ..+..+++++ +. .+.+++++.+ ....+-+.+.+. ..+ |+.+.+|+.+ .
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G--------~~~~l~~~l~~~~~~~~-~v~~~G~~~~~~ 268 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICG--------KSKELKRSLTAKFKSNE-NVLILGYTKHMN 268 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcC--------CCHHHHHHHHHHhccCC-CeEEEeccchHH
Confidence 3466788888887631 2233344443 22 2346666652 211111222221 123 4999999975 5
Q ss_pred HHhccCCccceeeccCchhHHHHHHhCCceecc-ccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHH
Q 011531 365 EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW-PQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREE 443 (483)
Q Consensus 365 ~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~ 443 (483)
.+++.+++ +|+..|..|+.||+++|+|+|++ |..++|..|+..+.+ .|+|+... +.+.+.++|.++++| ++
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~---~~~~l~~~i~~ll~~--~~ 340 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD---TPEEAIKIVASLTNG--NE 340 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC---CHHHHHHHHHHHhcC--HH
Confidence 68988887 99988888999999999999998 776778899999965 89998763 788999999999986 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011531 444 IMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRL 478 (483)
Q Consensus 444 ~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~ 478 (483)
..++|++..++...+ .+....++.+++.+..
T Consensus 341 ---~~~~m~~~~~~~~~~-~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 341 ---QLTNMISTMEQDKIK-YATQTICRDLLDLIGH 371 (391)
T ss_pred ---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhh
Confidence 345566666654222 3334445555554443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.44 E-value=6.9e-15 Score=128.92 Aligned_cols=135 Identities=14% Similarity=0.200 Sum_probs=93.2
Q ss_pred EEEEecCcccCCCH-HHHHHHHHHHHh--CCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccC-HHHHhcc
Q 011531 294 VLYVSFGSLVGLTR-EQMSELWHGLVN--RGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAP-QEEVLAH 369 (483)
Q Consensus 294 vi~vs~Gs~~~~~~-~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~ 369 (483)
+|+|+.||.....- +.+..+...+.. ...+++++++..... .....+. .... |+.+.+|++ ..++++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~------~~~~~~~-~~~~-~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE------ELKIKVE-NFNP-NVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH------HHCCCHC-CTTC-CCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH------HHHHHHh-ccCC-cEEEEechhhHHHHHHH
Confidence 48999998764211 112223333332 246788888432111 0001111 0113 499999999 8889988
Q ss_pred CCccceeeccCchhHHHHHHhCCceecccccc----chhHHHHHHHHhhccceecC-CCCCHHHHHHHHHHHHhH
Q 011531 370 PAVGGFLTHGGWNSTLEGIAAGVPMICWPQFS----DQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 370 ~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~i~~ll~~ 439 (483)
+++ +|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+. ...+.+.|.++|.+++.+
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCHHHHHHHHHHHHcC
Confidence 887 999999999999999999999999988 99999999976 89999998 677899999999999996
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.41 E-value=1.6e-10 Score=115.05 Aligned_cols=329 Identities=13% Similarity=0.083 Sum_probs=175.7
Q ss_pred CCCCCHHHHHHHHHHHHh--CCcEEE---EEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHH
Q 011531 16 PLQGHIKPMMSLAELLGS--ANFQVT---FVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVF 90 (483)
Q Consensus 16 ~~~GH~~p~l~La~~L~~--rGH~V~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~ 90 (483)
-++|-=.-.++|+++|.+ .|++|. ++++..-.+ +. .+.-..-...++.+.. ........+
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~-----------~ip~~g~~~~~~sgg~-~~~~~~~~~ 69 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NL-----------GIPIIGPTKELPSGGF-SYQSLRGLL 69 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hC-----------CCceeCCCCCCCCCCc-cCCCHHHHH
Confidence 355666778899999998 699999 999854322 11 1111111122333332 223333444
Q ss_pred HHHHH-hchHHH--HHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhhCCC
Q 011531 91 DAMKA-VSKPAF--RDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVEDGH 167 (483)
Q Consensus 91 ~~~~~-~~~~~~--~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (483)
..+.. .....+ ..++.++. .+||+||.-.-.. ...+|...|+|++.+.+.-....+ .+ -
T Consensus 70 ~~~~~gl~~~~~~~~~~~~~~~------~~p~~v~~~Gg~v--~~~aA~~~~~p~~~~~~~esn~~~-----~~-----~ 131 (396)
T TIGR03492 70 RDLRAGLVGLTLGQWRALRKWA------KKGDLIVAVGDIV--PLLFAWLSGKPYAFVGTAKSDYYW-----ES-----G 131 (396)
T ss_pred HHHHhhHHHHHHHHHHHHHHHh------hcCCEEEEECcHH--HHHHHHHcCCCceEEEeeccceee-----cC-----C
Confidence 43333 222222 23333432 2799999986544 788999999999996553111000 00 0
Q ss_pred CCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhc-ccccEEEEecCCCCHHHHHHHhhccCc
Q 011531 168 IPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAM-TRASALILNTFEIEAPVVSLLGSHFTK 246 (483)
Q Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~l~~~~~~~~~~~~~~ 246 (483)
|.. ..++....++|+.+ ..+ + ..... ..++.+++.+. ...+.++...-+
T Consensus 132 -~~~--~~~~~~~~~~G~~~------------------~p~-e----~n~l~~~~a~~v~~~~~----~t~~~l~~~g~k 181 (396)
T TIGR03492 132 -PRR--SPSDEYHRLEGSLY------------------LPW-E----RWLMRSRRCLAVFVRDR----LTARDLRRQGVR 181 (396)
T ss_pred -CCC--ccchhhhccCCCcc------------------CHH-H----HHHhhchhhCEEeCCCH----HHHHHHHHCCCe
Confidence 000 01111111122221 111 1 00111 33444444332 122222333347
Q ss_pred ceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHhC----CC
Q 011531 247 IYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNR----GQ 322 (483)
Q Consensus 247 ~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~----~~ 322 (483)
+.++|--..+.-. .... .-+ .+++++|.+--||....-.+.+..++++++.+ +.
T Consensus 182 ~~~vGnPv~d~l~-----------------~~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~ 239 (396)
T TIGR03492 182 ASYLGNPMMDGLE-----------------PPER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPF 239 (396)
T ss_pred EEEeCcCHHhcCc-----------------cccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCe
Confidence 8899964433210 0000 011 23456788999998654444455555555543 45
Q ss_pred eEEEEEcCCccCCCCCCCCCChhhhhhcC------------------CCceeEEeccC-HHHHhccCCccceeeccCchh
Q 011531 323 RFLLVVRPDLILGEPGAAETPLAQNEGTE------------------ERNRFIVSWAP-QEEVLAHPAVGGFLTHGGWNS 383 (483)
Q Consensus 323 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~nv~~~~~~p-~~~ll~~~~~~~~ItHgG~gs 383 (483)
.+++.+..+. ..+.+.+... .+++.+..+.. ...+++.+++ +|+-+|..|
T Consensus 240 ~~v~~~~~~~---------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T 308 (396)
T TIGR03492 240 VFLAAIVPSL---------SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT 308 (396)
T ss_pred EEEEEeCCCC---------CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH
Confidence 7777762211 0011111000 11255555554 4678988887 999999766
Q ss_pred HHHHHHhCCceeccccccchhHHHHHHHHhh----ccceecCCCCCHHHHHHHHHHHHhHhHHHHHH
Q 011531 384 TLEGIAAGVPMICWPQFSDQLVNSRCVSEVW----KIGFDMKDTCDGSIIEKLVRDLMENKREEIMG 446 (483)
Q Consensus 384 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~----G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~ 446 (483)
.|+...|+|+|++|.-..|. |+.... +. |.+..+. ..+.+.|.+++.++++| +..++
T Consensus 309 -~E~a~lg~P~Ilip~~~~q~-na~~~~-~~~~l~g~~~~l~-~~~~~~l~~~l~~ll~d--~~~~~ 369 (396)
T TIGR03492 309 -EQAVGLGKPVIQLPGKGPQF-TYGFAE-AQSRLLGGSVFLA-SKNPEQAAQVVRQLLAD--PELLE 369 (396)
T ss_pred -HHHHHhCCCEEEEeCCCCHH-HHHHHH-hhHhhcCCEEecC-CCCHHHHHHHHHHHHcC--HHHHH
Confidence 99999999999999877786 987663 33 6666663 35569999999999987 54443
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.38 E-value=2.4e-10 Score=114.04 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=99.4
Q ss_pred CCCeEEEEecCcccCCCHHH-HHHHHHHHH-----hCCCeEEEEEcCCccCCCCCCCCCChhhhhh-cCCCceeEEeccC
Q 011531 290 PPKSVLYVSFGSLVGLTREQ-MSELWHGLV-----NRGQRFLLVVRPDLILGEPGAAETPLAQNEG-TEERNRFIVSWAP 362 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~-~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~nv~~~~~~p 362 (483)
+++++|++..|+........ +..+...+. ..+.+++++.+. ...+-..+.+. ...+ +.+.+|++
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~--------~~~~~~~L~~~~~~~~-v~~~G~~~ 274 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGR--------NKKLQSKLESRDWKIP-VKVRGFVT 274 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECC--------CHHHHHHHHhhcccCC-eEEEeccc
Confidence 45677777777655433332 233332221 123456666632 11111222221 1234 88999998
Q ss_pred H-HHHhccCCccceeeccCchhHHHHHHhCCceeccccccchh-HHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHh
Q 011531 363 Q-EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQL-VNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENK 440 (483)
Q Consensus 363 ~-~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~ 440 (483)
+ .++|+.+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|..+ -+++.|.++|.+++++
T Consensus 275 ~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~---~~~~~la~~i~~ll~~- 347 (382)
T PLN02605 275 NMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS---ESPKEIARIVAEWFGD- 347 (382)
T ss_pred cHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec---CCHHHHHHHHHHHHcC-
Confidence 4 679977887 999999999999999999999999777775 68888865 7999876 4889999999999985
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011531 441 REEIMGSTDRVATMARDA 458 (483)
Q Consensus 441 ~~~~~~~a~~l~~~~~~~ 458 (483)
+ .+..++|++..++.
T Consensus 348 -~--~~~~~~m~~~~~~~ 362 (382)
T PLN02605 348 -K--SDELEAMSENALKL 362 (382)
T ss_pred -C--HHHHHHHHHHHHHh
Confidence 1 23455566666664
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.34 E-value=6.4e-13 Score=112.67 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=77.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHH
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDV 89 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~ 89 (483)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+. +++|..++... ... ........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~-----------Gl~~~~~~~~~-~~~--~~~~~~~~ 66 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA-----------GLEFVPIPGDS-RLP--RSLEPLAN 66 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT-----------T-EEEESSSCG-GGG--HHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc-----------CceEEEecCCc-CcC--cccchhhh
Confidence 78999999999999999999999999999999997776666443 59999998650 000 00000111
Q ss_pred HHHHHHh--chHHHHHHHHHhhh-h---hcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecchh
Q 011531 90 FDAMKAV--SKPAFRDLLISLRE-E---TEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 90 ~~~~~~~--~~~~~~~ll~~~~~-~---~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~~ 150 (483)
....... ....+.+.++.... . ..+....|+++.+..... +..+|+++|||++.....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 67 LRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFA-AALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTH-HHHHHHHHTS-EEEEESSGG
T ss_pred hhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCc-cceeEhhhCchHHHHhhCCc
Confidence 1111110 01111222222110 0 011135788888887777 99999999999999876654
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=2.2e-07 Score=91.45 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=60.7
Q ss_pred ceeEEeccCHHH---HhccCCccceeeccC----chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+|+++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+.+ .+.|... ...+.
T Consensus 248 ~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~-~~~~~ 319 (364)
T cd03814 248 NVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLV-EPGDA 319 (364)
T ss_pred cEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEc-CCCCH
Confidence 499999999655 7877776 886654 368999999999999887654 4445533 5888877 44577
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
+++.++|.+++.+
T Consensus 320 ~~l~~~i~~l~~~ 332 (364)
T cd03814 320 EAFAAALAALLAD 332 (364)
T ss_pred HHHHHHHHHHHcC
Confidence 8899999999996
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=9.7e-09 Score=92.71 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=105.9
Q ss_pred CeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCC-CceeEEeccC-HHHHhcc
Q 011531 292 KSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEE-RNRFIVSWAP-QEEVLAH 369 (483)
Q Consensus 292 ~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~p-~~~ll~~ 369 (483)
..-|+|++|.. .+.+..-+++..+.+.++++-.++ |+.......+..+... +|+.+..... ...|++.
T Consensus 158 ~r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~--------gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVV--------GSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEe--------cCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 33499999843 344566678888887776665556 3222233444433222 2366655554 5669988
Q ss_pred CCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHH
Q 011531 370 PAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTD 449 (483)
Q Consensus 370 ~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~ 449 (483)
+++ .|+.||. |++|++.-|+|.+++|+.-.|---|+..+ .+|+-..++-.++......-+.++..+ ...|++.-
T Consensus 228 ~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~-~lg~~~~l~~~l~~~~~~~~~~~i~~d--~~~rk~l~ 301 (318)
T COG3980 228 ADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFE-ALGIIKQLGYHLKDLAKDYEILQIQKD--YARRKNLS 301 (318)
T ss_pred cch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHH-hcCchhhccCCCchHHHHHHHHHhhhC--HHHhhhhh
Confidence 887 9999886 99999999999999999999999999995 588888876348888888889999988 66666665
Q ss_pred HHHHHH
Q 011531 450 RVATMA 455 (483)
Q Consensus 450 ~l~~~~ 455 (483)
.-++.+
T Consensus 302 ~~~~~i 307 (318)
T COG3980 302 FGSKLI 307 (318)
T ss_pred hcccee
Confidence 555444
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.08 E-value=5.8e-07 Score=92.28 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=77.2
Q ss_pred EEEecCcccCCCHHHHHHHHHHHHhC-CCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHH---HhccC
Q 011531 295 LYVSFGSLVGLTREQMSELWHGLVNR-GQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEE---VLAHP 370 (483)
Q Consensus 295 i~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~---ll~~~ 370 (483)
+++..|+... ...+..++++++.. +.++++ ++. | ...+.+.....+.||.+.+++|+.+ +++.+
T Consensus 265 ~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~------G---~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 265 LIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGD------G---PYREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred EEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeC------C---hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 4455677653 23355567777665 344443 321 1 1113333322233599999998544 78777
Q ss_pred CccceeeccC----chhHHHHHHhCCceeccccccchhHHHHHHHHh---hccceecCCCCCHHHHHHHHHHHHhH
Q 011531 371 AVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEV---WKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 371 ~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
++ +|.-.. -.++.||+++|+|+|+....+ ....+ +. -+.|..++ .-+.++++++|.+++++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~-~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYT-PGDVDDCVEKLETLLAD 400 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeC-CCCHHHHHHHHHHHHhC
Confidence 77 774332 347899999999999876532 22233 32 46777774 34789999999999986
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.08 E-value=3.5e-07 Score=89.83 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=57.5
Q ss_pred ceeEEeccCHHH---HhccCCccceee----ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCC
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLT----HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCD 425 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~It----HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 425 (483)
|+.+.+++++.+ ++..+++ +|. ..|. .++.||+++|+|+|+.+.. .+...+.+ .+.|..++ .-+
T Consensus 244 ~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~-~~d 315 (359)
T cd03823 244 RVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRD-GVNGLLFP-PGD 315 (359)
T ss_pred eEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcC-CCcEEEEC-CCC
Confidence 499999997544 6877777 663 2344 4799999999999987654 34555633 35677774 446
Q ss_pred HHHHHHHHHHHHhH
Q 011531 426 GSIIEKLVRDLMEN 439 (483)
Q Consensus 426 ~~~l~~~i~~ll~~ 439 (483)
.+++.++|.+++++
T Consensus 316 ~~~l~~~i~~l~~~ 329 (359)
T cd03823 316 AEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999986
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.03 E-value=3e-07 Score=92.15 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=58.6
Q ss_pred ceeEEeccCHHH---HhccCCccceeecc---C-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTHG---G-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItHg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+|+|+.+ ++..+++ +++.. | -.++.||+++|+|+|+.+..+ ....+.+ .+.|..++ .-+.
T Consensus 284 ~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~-~~~g~~~~-~~~~ 355 (398)
T cd03800 284 RVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVD-GVTGLLVD-PRDP 355 (398)
T ss_pred eEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccC-CCCeEEeC-CCCH
Confidence 499999999765 5777776 76432 2 358999999999999876543 4445633 46788874 3479
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
++++++|.+++++
T Consensus 356 ~~l~~~i~~l~~~ 368 (398)
T cd03800 356 EALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 50
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.00 E-value=2.6e-06 Score=86.05 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=71.3
Q ss_pred ceeEEeccCHH---HHhccCCccceeeccCc------hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCC
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLTHGGW------NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTC 424 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~ItHgG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 424 (483)
||.+.+|+|+. .+++.+++-++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|..+ +.-
T Consensus 285 ~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~-~~~ 358 (412)
T PRK10307 285 NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCV-EPE 358 (412)
T ss_pred ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEe-CCC
Confidence 49999999865 47878887555555332 2468999999999998754321 12233 3 677777 345
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 011531 425 DGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLM 479 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~ 479 (483)
+.++++++|.+++++ +..+ ++|++..++...+.=+....++.+++.+++.
T Consensus 359 d~~~la~~i~~l~~~--~~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 359 SVEALVAAIAALARQ--ALLR---PKLGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred CHHHHHHHHHHHHhC--HHHH---HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 789999999999985 3222 2233333333222234345566666655543
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.99 E-value=4e-06 Score=84.25 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=56.6
Q ss_pred ceeEEeccCHHH---HhccCCccceeec-cCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTH-GGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItH-gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
||.+.+++|+.+ +|..+++-++.+. .|. .++.||+++|+|+|+... ......+.+ -..|..+ ..-+.++
T Consensus 282 ~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~-~~~G~lv-~~~d~~~ 355 (396)
T cd03818 282 RVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITD-GENGLLV-DFFDPDA 355 (396)
T ss_pred eEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhccc-CCceEEc-CCCCHHH
Confidence 499999999755 6667777222232 333 489999999999998654 334455532 3467666 3457999
Q ss_pred HHHHHHHHHhH
Q 011531 429 IEKLVRDLMEN 439 (483)
Q Consensus 429 l~~~i~~ll~~ 439 (483)
++++|.+++++
T Consensus 356 la~~i~~ll~~ 366 (396)
T cd03818 356 LAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHhC
Confidence 99999999996
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.99 E-value=1.6e-06 Score=84.79 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=56.8
Q ss_pred ceeEEeccC-HHHHhccCCccceeeccC----chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 354 NRFIVSWAP-QEEVLAHPAVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 354 nv~~~~~~p-~~~ll~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
|+.+.++.. ...++..+++ +|.-.. -+++.||+++|+|+|+.+..+ ....+.+ .+.|..+ ..-+.++
T Consensus 247 ~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~-~~~g~~~-~~~~~~~ 318 (359)
T cd03808 247 RVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVID-GVNGFLV-PPGDAEA 318 (359)
T ss_pred eEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhc-CcceEEE-CCCCHHH
Confidence 488888754 4668877877 665432 478999999999999976543 3445533 4677766 3447899
Q ss_pred HHHHHHHHHhH
Q 011531 429 IEKLVRDLMEN 439 (483)
Q Consensus 429 l~~~i~~ll~~ 439 (483)
+.++|.+++.+
T Consensus 319 ~~~~i~~l~~~ 329 (359)
T cd03808 319 LADAIERLIED 329 (359)
T ss_pred HHHHHHHHHhC
Confidence 99999999886
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.95 E-value=1.3e-06 Score=86.79 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=56.2
Q ss_pred ceeEEeccCH-HHHhccCCccceee---ccC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 354 NRFIVSWAPQ-EEVLAHPAVGGFLT---HGG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 354 nv~~~~~~p~-~~ll~~~~~~~~It---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
|+.+.++.++ ..++..+++ +|. ..| -.++.||+++|+|+|+.... ..+..+.+ -..|..++ .-+.++
T Consensus 254 ~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~-~~~G~~~~-~~~~~~ 325 (371)
T cd04962 254 DVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKH-GETGFLVD-VGDVEA 325 (371)
T ss_pred eEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcC-CCceEEcC-CCCHHH
Confidence 3888888774 668877777 552 223 35999999999999986543 34555633 35676663 357899
Q ss_pred HHHHHHHHHhH
Q 011531 429 IEKLVRDLMEN 439 (483)
Q Consensus 429 l~~~i~~ll~~ 439 (483)
+.++|.+++++
T Consensus 326 l~~~i~~l~~~ 336 (371)
T cd04962 326 MAEYALSLLED 336 (371)
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.92 E-value=1.2e-06 Score=86.87 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=56.6
Q ss_pred ceeEEeccCHHH---HhccCCccceeeccC---------chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTHGG---------WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItHgG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 421 (483)
|+.+.+++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+.+ .+.|..++
T Consensus 276 ~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~~~~ 348 (394)
T cd03794 276 NVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGLVVP 348 (394)
T ss_pred cEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcceEeC
Confidence 499999998654 6767776 664322 234799999999999998876544 3323 36676664
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011531 422 DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~~ 439 (483)
.-+.++++++|.+++.|
T Consensus 349 -~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 349 -PGDPEALAAAILELLDD 365 (394)
T ss_pred -CCCHHHHHHHHHHHHhC
Confidence 34889999999999975
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.91 E-value=2.3e-06 Score=84.28 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=55.9
Q ss_pred ceeEEeccCHHH---HhccCCccceeec----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+++|+.+ ++..+++ +|.- +...++.||+++|+|+|+.... ..+..+.+ .+.|..++. -+.
T Consensus 260 ~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~-~~~ 331 (374)
T cd03817 260 RVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVAD-GENGFLFPP-GDE 331 (374)
T ss_pred cEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----Chhhheec-CceeEEeCC-CCH
Confidence 499999999754 6777777 6633 3346899999999999987643 34555533 467777752 222
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
.+.+++.+++++
T Consensus 332 -~~~~~i~~l~~~ 343 (374)
T cd03817 332 -ALAEALLRLLQD 343 (374)
T ss_pred -HHHHHHHHHHhC
Confidence 899999999986
No 56
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.90 E-value=4.6e-07 Score=89.98 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=60.9
Q ss_pred ceeEEeccCH---HHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHH
Q 011531 354 NRFIVSWAPQ---EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIE 430 (483)
Q Consensus 354 nv~~~~~~p~---~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~ 430 (483)
|+.+.+.+++ ..+++++++ +|+-.|.. +.||+++|+|+|.++..++++. .+ + .|.+..+. .+++.|.
T Consensus 256 ~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~~~lv~--~d~~~i~ 325 (365)
T TIGR00236 256 RVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-E-AGTNKLVG--TDKENIT 325 (365)
T ss_pred CEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-h-cCceEEeC--CCHHHHH
Confidence 4988877664 456766666 99977654 7999999999999976666552 23 4 57666553 4789999
Q ss_pred HHHHHHHhHhHHHHHHHH
Q 011531 431 KLVRDLMENKREEIMGST 448 (483)
Q Consensus 431 ~~i~~ll~~~~~~~~~~a 448 (483)
+++.+++++ +..+++.
T Consensus 326 ~ai~~ll~~--~~~~~~~ 341 (365)
T TIGR00236 326 KAAKRLLTD--PDEYKKM 341 (365)
T ss_pred HHHHHHHhC--hHHHHHh
Confidence 999999987 6555443
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.86 E-value=5.6e-06 Score=81.03 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=58.3
Q ss_pred ceeEEeccCH---HHHhccCCccceee----ccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQ---EEVLAHPAVGGFLT----HGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~---~~ll~~~~~~~~It----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+++++ ..++..+++ +|. -|.-+++.||+++|+|+|+.+. ......+. ..+.|..+ ...+.
T Consensus 257 ~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~-~~~~g~~~-~~~~~ 328 (374)
T cd03801 257 RVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVE-DGETGLLV-PPGDP 328 (374)
T ss_pred ceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhc-CCcceEEe-CCCCH
Confidence 4999999974 447877777 663 2445799999999999998776 33455553 24677776 44568
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
+++.++|.+++++
T Consensus 329 ~~l~~~i~~~~~~ 341 (374)
T cd03801 329 EALAEAILRLLDD 341 (374)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999986
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.83 E-value=7.2e-06 Score=80.56 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=57.7
Q ss_pred ceeEEeccCHH---HHhccCCccceee----ccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLT----HGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~It----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+++++. .++..+++ +|. -|.-+++.||+++|+|+|+.+..+ ....+.+ .+.|..+ ..-+.
T Consensus 260 ~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~-~~~g~~~-~~~~~ 331 (377)
T cd03798 260 RVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITD-GENGLLV-PPGDP 331 (377)
T ss_pred eEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcC-CcceeEE-CCCCH
Confidence 49999999864 56767776 552 244578999999999999866543 3445533 4556666 45689
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
+++.++|.+++++
T Consensus 332 ~~l~~~i~~~~~~ 344 (377)
T cd03798 332 EALAEAILRLLAD 344 (377)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999996
No 59
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.82 E-value=8.7e-06 Score=82.26 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=53.4
Q ss_pred eeEE-eccCHHH---HhccCCccceee-c-----cC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCC
Q 011531 355 RFIV-SWAPQEE---VLAHPAVGGFLT-H-----GG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDT 423 (483)
Q Consensus 355 v~~~-~~~p~~~---ll~~~~~~~~It-H-----gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 423 (483)
+.+. +|+|..+ +|+.+++ +|. + -| -.++.||+++|+|+|+.... .....+.+ -+.|..++
T Consensus 296 ~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~-~~~G~lv~-- 366 (415)
T cd03816 296 VTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKH-GENGLVFG-- 366 (415)
T ss_pred EEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcC-CCCEEEEC--
Confidence 6554 6888544 5777887 553 1 12 24799999999999986543 34456633 56788873
Q ss_pred CCHHHHHHHHHHHHhH
Q 011531 424 CDGSIIEKLVRDLMEN 439 (483)
Q Consensus 424 ~~~~~l~~~i~~ll~~ 439 (483)
+.++++++|.+++++
T Consensus 367 -d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 -DSEELAEQLIDLLSN 381 (415)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 799999999999986
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.82 E-value=3.8e-06 Score=82.75 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=78.5
Q ss_pred EEEEecCcccCCCHHHHHHHHHHHHhCC-CeEEEEEcCCccCCCCCCCCCChhhhh-----hcCCCceeEEeccCHH---
Q 011531 294 VLYVSFGSLVGLTREQMSELWHGLVNRG-QRFLLVVRPDLILGEPGAAETPLAQNE-----GTEERNRFIVSWAPQE--- 364 (483)
Q Consensus 294 vi~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~nv~~~~~~p~~--- 364 (483)
.+++..|+... ...+..++++++... ..+++.-. | .....+.+ .... ||.+.+|+|+.
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~-------g---~~~~~~~~~~~~~~~~~-~V~~~g~v~~~~~~ 258 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGE-------G---PLEAELEALAAALGLLD-RVRFLGRLDDEEKA 258 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeC-------C---hhHHHHHHHHHhcCCcc-eEEEcCCCCHHHHH
Confidence 45667777543 223445666666665 34333321 1 11122221 1223 49999999974
Q ss_pred HHhccCCccceee---ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 365 EVLAHPAVGGFLT---HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 365 ~ll~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
.+++.+++-++.+ +.|. .++.||+++|+|+|+....+....... + .+.|... ..-+.++++++|.++++|
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~-~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVV-PPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEe-CCCCHHHHHHHHHHHHHC
Confidence 4776777733333 2344 479999999999999776655543322 1 3667666 345899999999999996
No 61
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.81 E-value=3.3e-06 Score=85.65 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=58.4
Q ss_pred eeEEeccC-HHHHhccCCccceee----ccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHH
Q 011531 355 RFIVSWAP-QEEVLAHPAVGGFLT----HGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSII 429 (483)
Q Consensus 355 v~~~~~~p-~~~ll~~~~~~~~It----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 429 (483)
+++.+... -..+++.+++ +|+. =+|..++.||+++|+|+|+.|..+++......+.+ .|+++.. -+.++|
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~---~d~~~L 378 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV---EDAEDL 378 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE---CCHHHH
Confidence 55555444 3557777776 2331 13444699999999999999998888888877744 5766654 378999
Q ss_pred HHHHHHHHhH
Q 011531 430 EKLVRDLMEN 439 (483)
Q Consensus 430 ~~~i~~ll~~ 439 (483)
.++|.++++|
T Consensus 379 a~~l~~ll~~ 388 (425)
T PRK05749 379 AKAVTYLLTD 388 (425)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 62
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.79 E-value=6.7e-06 Score=79.25 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc-hhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCH
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN-HDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTA 86 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~ 86 (483)
|||.+--. ..-|+.-+..+.++|.++||+|.+.+-+.. ...+.... ++++..+.. ...+.
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y----------g~~y~~iG~--------~g~~~ 61 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY----------GIDYIVIGK--------HGDSL 61 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc----------CCCeEEEcC--------CCCCH
Confidence 45555443 335999999999999999999998876432 23444433 366666653 11222
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 87 KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
........ ....++++.+++ .+||++|+- ..+. +..+|.-+|+|+|.+.-.
T Consensus 62 ~~Kl~~~~----~R~~~l~~~~~~-----~~pDv~is~-~s~~-a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 62 YGKLLESI----ERQYKLLKLIKK-----FKPDVAISF-GSPE-AARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHHHH----HHHHHHHHHHHh-----hCCCEEEec-CcHH-HHHHHHHhCCCeEEEecC
Confidence 22211111 123344444443 689999976 3455 788999999999998553
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.73 E-value=1.9e-05 Score=77.94 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=56.7
Q ss_pred CCCceeEEeccC-HH---HHhccCCccceeecc----CchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCC
Q 011531 351 EERNRFIVSWAP-QE---EVLAHPAVGGFLTHG----GWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKD 422 (483)
Q Consensus 351 ~~~nv~~~~~~p-~~---~ll~~~~~~~~ItHg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 422 (483)
..+ +.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+....+ ....+.+ .+.|..+ .
T Consensus 243 ~~~-v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~-~~~g~~~-~ 313 (365)
T cd03825 243 PFP-VHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDH-GVTGYLA-K 313 (365)
T ss_pred CCc-eEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeC-CCceEEe-C
Confidence 344 88899998 43 46877777 77643 3479999999999999875432 2233422 3466666 3
Q ss_pred CCCHHHHHHHHHHHHhH
Q 011531 423 TCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 423 ~~~~~~l~~~i~~ll~~ 439 (483)
..+.+.+.+++.+++++
T Consensus 314 ~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 314 PGDPEDLAEGIEWLLAD 330 (365)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 45789999999999986
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.73 E-value=2.8e-05 Score=78.34 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=57.2
Q ss_pred ceeEEeccCHH---HHhccCCccceee---ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLT---HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
||.+.+++|+. ++|+.+++ +|. +.|. .++.||+++|+|+|+....+ ....+.+ -+.|..++ .-+.
T Consensus 284 ~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~-~~~g~~~~-~~d~ 355 (405)
T TIGR03449 284 RVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVAD-GETGLLVD-GHDP 355 (405)
T ss_pred eEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhcc-CCceEECC-CCCH
Confidence 39999999864 57877777 653 2333 58999999999999976543 3344533 45677763 3578
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
++++++|.+++++
T Consensus 356 ~~la~~i~~~l~~ 368 (405)
T TIGR03449 356 ADWADALARLLDD 368 (405)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 65
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.72 E-value=1.3e-06 Score=86.73 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=82.4
Q ss_pred CCeEEEEecCcccCC-CHHHHHHHHHHHHhCCCe-EEEEEcCCccCCCCCCCCCChhhhhh---cC--CCceeEEeccCH
Q 011531 291 PKSVLYVSFGSLVGL-TREQMSELWHGLVNRGQR-FLLVVRPDLILGEPGAAETPLAQNEG---TE--ERNRFIVSWAPQ 363 (483)
Q Consensus 291 ~~~vi~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~nv~~~~~~p~ 363 (483)
++++|++++|..... ....+..++++++....+ +.++...+ . .....+.+. .. ..|+.+.+..++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~--~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------P--RTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------C--ChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 455677888876543 345567777877765332 44444211 0 111222221 11 224888776654
Q ss_pred H---HHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 364 E---EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 364 ~---~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
. .++..+++ ||+..| |.+.||+++|+|+|.++.. |. ++-+.+ .|++..+.. +.++|.++|.+++++
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecCC--CHHHHHHHHHHHhcC
Confidence 3 46766776 999999 8888999999999998743 22 323334 677766632 589999999999986
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.70 E-value=4.5e-05 Score=75.04 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=54.9
Q ss_pred ceeEEeccCHHH---HhccCCccceeec---cC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTH---GG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItH---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+|+++.+ ++..+++ +|.- .| -.++.||+++|+|+|+.+..+ ....+ .. +.|...+. +.
T Consensus 263 ~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~-~~-~~~~~~~~--~~ 332 (375)
T cd03821 263 RVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELI-EY-GCGWVVDD--DV 332 (375)
T ss_pred eEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHh-hc-CceEEeCC--Ch
Confidence 399999999544 5777777 5432 22 368999999999999976433 44445 33 77776652 34
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
+++.++|.+++++
T Consensus 333 ~~~~~~i~~l~~~ 345 (375)
T cd03821 333 DALAAALRRALEL 345 (375)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999996
No 67
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.68 E-value=3.8e-05 Score=78.23 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCCceeEEeccCHHHH---hccC--Cccceeecc---Cc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC
Q 011531 351 EERNRFIVSWAPQEEV---LAHP--AVGGFLTHG---GW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 351 ~~~nv~~~~~~p~~~l---l~~~--~~~~~ItHg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 421 (483)
.++ |.+.+++++.++ +..+ ++++||... |. .++.||+++|+|+|+....+ ....+.+ ...|..+
T Consensus 316 ~~~-V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~-~~~G~lv- 388 (439)
T TIGR02472 316 YGK-VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIAN-CRNGLLV- 388 (439)
T ss_pred Cce-EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcC-CCcEEEe-
Confidence 355 888888886554 5433 123377543 33 49999999999999887543 3444532 3467766
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011531 422 DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~~ 439 (483)
..-+.++++++|.+++++
T Consensus 389 ~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 389 DVLDLEAIASALEDALSD 406 (439)
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 445789999999999997
No 68
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.66 E-value=4.3e-05 Score=74.20 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=59.2
Q ss_pred eeEEeccC-HHHHhccCCccceeeccC----chhHHHHHHhCCceeccccccchhHHHHHHHHhhc-cceecCCCCCHHH
Q 011531 355 RFIVSWAP-QEEVLAHPAVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWK-IGFDMKDTCDGSI 428 (483)
Q Consensus 355 v~~~~~~p-~~~ll~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~ 428 (483)
+.+.++.. ...++..+++ +|.-.. -+++.||+++|+|+|+.+..+.+. .+.+ .| .|..+ +..+.++
T Consensus 237 v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~-~~~~g~~~-~~~~~~~ 308 (348)
T cd03820 237 VILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIE-DGVNGLLV-PNGDVEA 308 (348)
T ss_pred EEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhc-cCcceEEe-CCCCHHH
Confidence 77777744 4668877776 665542 468999999999999876554433 2323 34 77777 4457899
Q ss_pred HHHHHHHHHhHhHHHHHHHHH
Q 011531 429 IEKLVRDLMENKREEIMGSTD 449 (483)
Q Consensus 429 l~~~i~~ll~~~~~~~~~~a~ 449 (483)
++++|.++++| ++.+++..
T Consensus 309 ~~~~i~~ll~~--~~~~~~~~ 327 (348)
T cd03820 309 LAEALLRLMED--EELRKRMG 327 (348)
T ss_pred HHHHHHHHHcC--HHHHHHHH
Confidence 99999999997 55444333
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.66 E-value=5.6e-05 Score=76.00 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=53.0
Q ss_pred ceeEEeccCHH---HHhccCCccceee---ccCch-hHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLT---HGGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
+|.+.+|+|+. .+++.+++ +|. +-|.| ++.||+++|+|+|+.+..+- ...+ + .|.+... . .+.
T Consensus 251 ~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i-~-~~~~~~~-~-~~~ 320 (398)
T cd03796 251 RVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVL-P-PDMILLA-E-PDV 320 (398)
T ss_pred eEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhe-e-CCceeec-C-CCH
Confidence 39999999854 47767776 653 23444 99999999999999877532 2344 3 2433333 2 278
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
+++.+++.+++++
T Consensus 321 ~~l~~~l~~~l~~ 333 (398)
T cd03796 321 ESIVRKLEEAISI 333 (398)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999884
No 70
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.61 E-value=3e-05 Score=75.40 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=89.7
Q ss_pred eEEEEecCcccCCCHHHHHHHHHHHHhCCCe-EEEEEcCCccCCCCCCCCCChhhhhhcCC-CceeEEeccCHHHHhccC
Q 011531 293 SVLYVSFGSLVGLTREQMSELWHGLVNRGQR-FLLVVRPDLILGEPGAAETPLAQNEGTEE-RNRFIVSWAPQEEVLAHP 370 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~p~~~ll~~~ 370 (483)
++|.+--||....-...+..++++.+.+..+ .++.+.. .. .. +.+.+.... ..+.+.+ .-.+++..+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~-------a~-~~-~~i~~~~~~~~~~~~~~--~~~~~m~~a 236 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPS-------FF-KG-KDLKEIYGDISEFEISY--DTHKALLEA 236 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeC-------CC-cH-HHHHHHHhcCCCcEEec--cHHHHHHhh
Confidence 6899999998764445555455555443222 2333321 11 11 222222211 1133332 335688777
Q ss_pred CccceeeccCchhHHHHHHhCCceecccc--ccchhHHHHHHHH--hhccceec-------------C-CCCCHHHHHHH
Q 011531 371 AVGGFLTHGGWNSTLEGIAAGVPMICWPQ--FSDQLVNSRCVSE--VWKIGFDM-------------K-DTCDGSIIEKL 432 (483)
Q Consensus 371 ~~~~~ItHgG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~v~~--~~G~G~~l-------------~-~~~~~~~l~~~ 432 (483)
++ +|+-+|..|+ |+..+|+|+|+ ++ ..-|..||+++++ ..|+.-.+ - +.+|++.|.++
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 77 9999999999 99999999998 54 3468899999852 24554444 2 57899999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHH
Q 011531 433 VRDLMENKREEIMGSTDRVATMA 455 (483)
Q Consensus 433 i~~ll~~~~~~~~~~a~~l~~~~ 455 (483)
+.+. .. +++++...++++.+
T Consensus 313 i~~~-~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 313 YKEM-DR--EKFFKKSKELREYL 332 (347)
T ss_pred HHHH-HH--HHHHHHHHHHHHHh
Confidence 9882 22 56666666666666
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.61 E-value=8.6e-05 Score=73.06 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=54.7
Q ss_pred ceeEEeccC-HHHHhccCCccceee--ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHH
Q 011531 354 NRFIVSWAP-QEEVLAHPAVGGFLT--HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSII 429 (483)
Q Consensus 354 nv~~~~~~p-~~~ll~~~~~~~~It--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 429 (483)
||.+.+|.+ ...++..+++-++-+ +-|. .++.||+++|+|+|+....+ ....+.+ .+.|..+ ..-+.+.+
T Consensus 247 ~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~-~~~g~~~-~~~~~~~l 320 (355)
T cd03819 247 RVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRP-GETGLLV-PPGDAEAL 320 (355)
T ss_pred eEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhC-CCceEEe-CCCCHHHH
Confidence 499998865 466888888733323 2233 59999999999999876433 3445533 3477777 44589999
Q ss_pred HHHHHHHHh
Q 011531 430 EKLVRDLME 438 (483)
Q Consensus 430 ~~~i~~ll~ 438 (483)
.++|.+++.
T Consensus 321 ~~~i~~~~~ 329 (355)
T cd03819 321 AQALDQILS 329 (355)
T ss_pred HHHHHHHHh
Confidence 999976665
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.59 E-value=8.8e-05 Score=74.25 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=55.9
Q ss_pred ceeEEeccCHH---HHhccCCccceeec---cC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLTH---GG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~ItH---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
||.+.+++|.. .++..+++ ++.. -| -.++.||+++|+|+|+.-..+ ....+.+ .+.|...+ . +.
T Consensus 281 ~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~-~~~g~~~~-~-~~ 351 (392)
T cd03805 281 QVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVD-GETGFLCE-P-TP 351 (392)
T ss_pred eEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhcc-CCceEEeC-C-CH
Confidence 49999999965 46777777 5532 22 257899999999999975543 3334533 35676663 3 78
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
++++++|.+++++
T Consensus 352 ~~~a~~i~~l~~~ 364 (392)
T cd03805 352 EEFAEAMLKLAND 364 (392)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 73
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.55 E-value=6.5e-05 Score=74.38 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=59.4
Q ss_pred CCCceeEEeccCHHH---HhccCCccceeec----------cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccc
Q 011531 351 EERNRFIVSWAPQEE---VLAHPAVGGFLTH----------GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIG 417 (483)
Q Consensus 351 ~~~nv~~~~~~p~~~---ll~~~~~~~~ItH----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 417 (483)
.++ +.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|+.+..+ ++..+.+ .+.|
T Consensus 244 ~~~-v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~-~~~g 315 (367)
T cd05844 244 GGR-VTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVED-GETG 315 (367)
T ss_pred CCe-EEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheec-CCee
Confidence 344 99999998644 5877777 5532 22468999999999999877643 5555543 5778
Q ss_pred eecCCCCCHHHHHHHHHHHHhH
Q 011531 418 FDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 418 ~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
..++ .-+.+++.++|.+++++
T Consensus 316 ~~~~-~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 316 LLVP-EGDVAALAAALGRLLAD 336 (367)
T ss_pred EEEC-CCCHHHHHHHHHHHHcC
Confidence 7774 45789999999999996
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.54 E-value=0.0003 Score=68.84 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=53.3
Q ss_pred eeEEeccC-HHHHhccCCccceeeccC----chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHH
Q 011531 355 RFIVSWAP-QEEVLAHPAVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSII 429 (483)
Q Consensus 355 v~~~~~~p-~~~ll~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 429 (483)
+.+.+... ...+++.+++ +|..+. -+++.||+++|+|+|+... ..+...+ +. .|..++ .-+.+++
T Consensus 253 v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~-~~--~g~~~~-~~~~~~l 322 (365)
T cd03807 253 VILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELV-GD--TGFLVP-PGDPEAL 322 (365)
T ss_pred EEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHh-hc--CCEEeC-CCCHHHH
Confidence 77666554 4668877777 775543 3799999999999998544 3445555 32 555553 3468999
Q ss_pred HHHHHHHHhH
Q 011531 430 EKLVRDLMEN 439 (483)
Q Consensus 430 ~~~i~~ll~~ 439 (483)
.++|.+++++
T Consensus 323 ~~~i~~l~~~ 332 (365)
T cd03807 323 AEAIEALLAD 332 (365)
T ss_pred HHHHHHHHhC
Confidence 9999999996
No 75
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.53 E-value=0.00047 Score=75.23 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCceeEEeccCHHH---HhccCC--ccceeec---cCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC
Q 011531 351 EERNRFIVSWAPQEE---VLAHPA--VGGFLTH---GGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 351 ~~~nv~~~~~~p~~~---ll~~~~--~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 421 (483)
.++ |.+.+++++.+ ++..++ .++||.- =|. .++.||+++|+|+|.....+ ....+ +.-.-|..+
T Consensus 547 ~g~-V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLV- 619 (1050)
T TIGR02468 547 YGQ-VAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLV- 619 (1050)
T ss_pred CCe-EEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEE-
Confidence 345 88889988755 454342 1236653 344 48999999999999987643 22233 222456666
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011531 422 DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~~ 439 (483)
..-+.+.|+++|.+++++
T Consensus 620 dP~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 620 DPHDQQAIADALLKLVAD 637 (1050)
T ss_pred CCCCHHHHHHHHHHHhhC
Confidence 446889999999999996
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.51 E-value=0.00018 Score=70.84 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=54.9
Q ss_pred ceeEEe-ccCH---HHHhccCCccceee--c----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCC
Q 011531 354 NRFIVS-WAPQ---EEVLAHPAVGGFLT--H----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDT 423 (483)
Q Consensus 354 nv~~~~-~~p~---~~ll~~~~~~~~It--H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 423 (483)
||.+.+ |+|+ ..+++.+++ +|. + |.-+++.||+++|+|+|+.+..+ ...+.+ .+.|..++ .
T Consensus 248 ~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~-~ 318 (366)
T cd03822 248 RVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVP-P 318 (366)
T ss_pred cEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEc-C
Confidence 388874 5885 457777776 552 2 33468999999999999987654 223433 46777664 3
Q ss_pred CCHHHHHHHHHHHHhH
Q 011531 424 CDGSIIEKLVRDLMEN 439 (483)
Q Consensus 424 ~~~~~l~~~i~~ll~~ 439 (483)
-+.+++++++.+++++
T Consensus 319 ~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 319 GDPAALAEAIRRLLAD 334 (366)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 4689999999999986
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.50 E-value=0.00017 Score=70.83 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=56.5
Q ss_pred ceeEEeccCHH---HHhccCCccceee--c--------cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceec
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLT--H--------GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDM 420 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~It--H--------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l 420 (483)
|+.+.+++|+. .+++.+++ +|. . |.-.++.||+++|+|+|+.+..+ ....+ +....|..+
T Consensus 237 ~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~ 309 (355)
T cd03799 237 RVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLV 309 (355)
T ss_pred eEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEe
Confidence 49999999854 46767777 555 2 33468999999999999876532 22344 323477777
Q ss_pred CCCCCHHHHHHHHHHHHhH
Q 011531 421 KDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 421 ~~~~~~~~l~~~i~~ll~~ 439 (483)
+ .-+.+++.++|.+++++
T Consensus 310 ~-~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 310 P-PGDPEALADAIERLLDD 327 (355)
T ss_pred C-CCCHHHHHHHHHHHHhC
Confidence 3 34899999999999986
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.49 E-value=5.9e-05 Score=73.58 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=74.9
Q ss_pred EEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhh--cCCCceeEEeccCHH---HHhcc
Q 011531 295 LYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEG--TEERNRFIVSWAPQE---EVLAH 369 (483)
Q Consensus 295 i~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~---~ll~~ 369 (483)
+.+..|.... ......++++++..+.++++.-.... .........+. ..++ +.+.+++++. .+++.
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~~-v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSD------PDYFYREIAPELLDGPD-IEYLGEVGGAEKAELLGN 243 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCC------HHHHHHHHHHhcccCCc-EEEeCCCCHHHHHHHHHh
Confidence 3445566532 22234566777777777665432110 00000111111 1344 9999999975 46777
Q ss_pred CCccceee--ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 370 PAVGGFLT--HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 370 ~~~~~~It--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
+++-++-+ +-|. .++.||+++|+|+|+....+ ....+ +.-..|...+. .+++.++|.++++.
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i-~~~~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVV-EDGVTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhhe-eCCCcEEEeCC---HHHHHHHHHHHhcc
Confidence 77733323 2344 48999999999999876642 33345 32236777643 99999999998764
No 79
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.42 E-value=7.5e-05 Score=73.95 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred ceeEEeccCH--HH---HhccCCccceeec----cCchhHHHHHHhCCceeccc-cccchhHHHHHHHHhhccceecCCC
Q 011531 354 NRFIVSWAPQ--EE---VLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWP-QFSDQLVNSRCVSEVWKIGFDMKDT 423 (483)
Q Consensus 354 nv~~~~~~p~--~~---ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~ 423 (483)
||.+.+|+++ .. .++.+++ +|.. |--.++.||+++|+|+|+.. ..+ ....+ +.-..|..+ ..
T Consensus 237 ~v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv-~~ 308 (359)
T PRK09922 237 RIIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELY-TP 308 (359)
T ss_pred eEEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEE-CC
Confidence 4999998753 33 3444555 5542 22469999999999999876 332 22344 323567776 44
Q ss_pred CCHHHHHHHHHHHHhH
Q 011531 424 CDGSIIEKLVRDLMEN 439 (483)
Q Consensus 424 ~~~~~l~~~i~~ll~~ 439 (483)
-+.++++++|.+++++
T Consensus 309 ~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 309 GNIDEFVGKLNKVISG 324 (359)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6999999999999997
No 80
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.41 E-value=7.9e-05 Score=72.43 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=52.6
Q ss_pred ceeEEeccCH-HHHhccCCccceeec----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 354 NRFIVSWAPQ-EEVLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 354 nv~~~~~~p~-~~ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
|+.+.++.+. ..+++.+++ +|.- |.-+++.||+++|+|+|+.... .....+.+ .+.|... +.-+.+.
T Consensus 247 ~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~-~~~~~~~ 318 (353)
T cd03811 247 RVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLV-PVGDEAA 318 (353)
T ss_pred cEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEE-CCCCHHH
Confidence 3888888774 568878777 6532 2346899999999999986554 44556643 5777777 4456777
Q ss_pred H---HHHHHHHHhH
Q 011531 429 I---EKLVRDLMEN 439 (483)
Q Consensus 429 l---~~~i~~ll~~ 439 (483)
+ .+.+.+++.+
T Consensus 319 ~~~~~~~i~~~~~~ 332 (353)
T cd03811 319 LAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHhccCC
Confidence 7 4455555554
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.38 E-value=0.00019 Score=70.70 Aligned_cols=75 Identities=11% Similarity=0.147 Sum_probs=52.9
Q ss_pred ceeEEeccCH-HHHhccCCccceeecc----CchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 354 NRFIVSWAPQ-EEVLAHPAVGGFLTHG----GWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 354 nv~~~~~~p~-~~ll~~~~~~~~ItHg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
|+.+.++..+ ..++..+++ +|.-. .-+++.||+++|+|+|+. |...+...+.+ .|..+ ..-+.++
T Consensus 246 ~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~-~~~~~~~ 315 (360)
T cd04951 246 RVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIV-PISDPEA 315 (360)
T ss_pred cEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEe-CCCCHHH
Confidence 4888887753 668888887 55432 246899999999999974 44445555532 33334 3358899
Q ss_pred HHHHHHHHHh
Q 011531 429 IEKLVRDLME 438 (483)
Q Consensus 429 l~~~i~~ll~ 438 (483)
++++|.++++
T Consensus 316 ~~~~i~~ll~ 325 (360)
T cd04951 316 LANKIDEILK 325 (360)
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 82
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.35 E-value=0.0049 Score=65.88 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=50.5
Q ss_pred CCceeEEecc-CH---HHHhcc-CC-ccceee---ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC
Q 011531 352 ERNRFIVSWA-PQ---EEVLAH-PA-VGGFLT---HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 352 ~~nv~~~~~~-p~---~~ll~~-~~-~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 421 (483)
++ |.+.++. +. ..++.+ ++ .++||. .=|. -++.||+++|+|+|+.-..+ ....|.+ -.-|..++
T Consensus 619 g~-V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~d-g~tGfLVd 692 (784)
T TIGR02470 619 GQ-IRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQD-GVSGFHID 692 (784)
T ss_pred Ce-EEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcC-CCcEEEeC
Confidence 45 8887764 32 234432 21 123663 2233 49999999999999866543 4445533 34577774
Q ss_pred CCCCHHHHHHHHHHHH
Q 011531 422 DTCDGSIIEKLVRDLM 437 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll 437 (483)
.-+.++++++|.+++
T Consensus 693 -p~D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 -PYHGEEAAEKIVDFF 707 (784)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 457899999999886
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.30 E-value=0.00087 Score=66.04 Aligned_cols=74 Identities=24% Similarity=0.309 Sum_probs=48.0
Q ss_pred ceeEEeccCHHH---HhccCCccceeecc----Cc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCC
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTHG----GW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCD 425 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItHg----G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 425 (483)
||.+.+++|+.+ ++..+++ ++-+. |. +++.||+++|+|+|+....+. ...+ +. .|...+ .
T Consensus 249 ~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~-~~--~g~~~~---~ 316 (363)
T cd04955 249 RIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVL-GD--KAIYFK---V 316 (363)
T ss_pred cEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceee-cC--CeeEec---C
Confidence 499999999764 5655665 55443 22 479999999999998765432 1222 21 233332 1
Q ss_pred HHHHHHHHHHHHhH
Q 011531 426 GSIIEKLVRDLMEN 439 (483)
Q Consensus 426 ~~~l~~~i~~ll~~ 439 (483)
.+.++++|.+++++
T Consensus 317 ~~~l~~~i~~l~~~ 330 (363)
T cd04955 317 GDDLASLLEELEAD 330 (363)
T ss_pred chHHHHHHHHHHhC
Confidence 12299999999986
No 84
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.25 E-value=9e-06 Score=66.46 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=75.3
Q ss_pred eEEEEecCcccCCCH-H-H-HHHHHHHHHhCCC-eEEEEEcCCccCCCCCCCCCChhhhh-hcCCC-ceeEEeccCH-HH
Q 011531 293 SVLYVSFGSLVGLTR-E-Q-MSELWHGLVNRGQ-RFLLVVRPDLILGEPGAAETPLAQNE-GTEER-NRFIVSWAPQ-EE 365 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~-~-~-~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-nv~~~~~~p~-~~ 365 (483)
..+||+-||....+- . . -....+.+.+.|. +.+...++... ..++.... +..+. .+...+|-|- .+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~~~d~~~~~~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------FFGDPIDLIRKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------CCCCHHHhhcccCCeEEEEEecCccHHH
Confidence 359999999883111 1 1 1346677777776 55666754311 12221111 01111 1334478884 66
Q ss_pred HhccCCccceeeccCchhHHHHHHhCCceecccc----ccchhHHHHHHHHhhcccee
Q 011531 366 VLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ----FSDQLVNSRCVSEVWKIGFD 419 (483)
Q Consensus 366 ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~ 419 (483)
..+.+++ +|+|+|.||++|.|+.|+|.|+++- -..|-.-|..+++ .|-=..
T Consensus 77 ~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~ 131 (170)
T KOG3349|consen 77 DIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYY 131 (170)
T ss_pred HHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEE
Confidence 6766777 9999999999999999999999995 4689999998866 454333
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.25 E-value=0.002 Score=64.11 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=51.9
Q ss_pred ceeEEe-ccCHHH---HhccCCccceee-c-----cCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCC
Q 011531 354 NRFIVS-WAPQEE---VLAHPAVGGFLT-H-----GGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKD 422 (483)
Q Consensus 354 nv~~~~-~~p~~~---ll~~~~~~~~It-H-----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 422 (483)
|+.+.. |+|+.+ +|+.+++ +|. + -|. +++.||+++|+|+|..... .+...+ +.-+.|..++
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~- 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS- 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC-
Confidence 377654 788755 4877777 663 1 122 4799999999999997542 255566 3346788884
Q ss_pred CCCHHHHHHHHHHHH
Q 011531 423 TCDGSIIEKLVRDLM 437 (483)
Q Consensus 423 ~~~~~~l~~~i~~ll 437 (483)
+.++++++|.++|
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 5889999988874
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.19 E-value=0.0021 Score=63.24 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=57.7
Q ss_pred CCceeEEeccCH-HHHhccCCccceeec----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 352 ERNRFIVSWAPQ-EEVLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 352 ~~nv~~~~~~p~-~~ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
++ +.+.++..+ ..+++.+++ +|.- |--.++.||+++|+|+|+....+- ...+ + .+.|... ..-+.
T Consensus 249 ~~-v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i-~-~~~~~~~-~~~~~ 318 (358)
T cd03812 249 DK-VIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDL-T-DLVKFLS-LDESP 318 (358)
T ss_pred Cc-EEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhh-c-cCccEEe-CCCCH
Confidence 44 888887543 668877777 5543 335799999999999998766542 2344 3 2555554 33458
Q ss_pred HHHHHHHHHHHhHhHHHHHH
Q 011531 427 SIIEKLVRDLMENKREEIMG 446 (483)
Q Consensus 427 ~~l~~~i~~ll~~~~~~~~~ 446 (483)
++++++|.+++++ +..++
T Consensus 319 ~~~a~~i~~l~~~--~~~~~ 336 (358)
T cd03812 319 EIWAEEILKLKSE--DRRER 336 (358)
T ss_pred HHHHHHHHHHHhC--cchhh
Confidence 9999999999997 55443
No 87
>PLN00142 sucrose synthase
Probab=98.16 E-value=0.003 Score=67.62 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=48.2
Q ss_pred CCceeEEe----ccCHHHHhc----cCCccceee---ccCch-hHHHHHHhCCceeccccccchhHHHHHHHHhhcccee
Q 011531 352 ERNRFIVS----WAPQEEVLA----HPAVGGFLT---HGGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFD 419 (483)
Q Consensus 352 ~~nv~~~~----~~p~~~ll~----~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 419 (483)
++ |.+.+ ..+..+++. ..++ ||. +-|.| ++.||+++|+|+|+....+ ....|.+ -.-|..
T Consensus 642 ~~-V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~d-G~tG~L 713 (815)
T PLN00142 642 GQ-FRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVD-GVSGFH 713 (815)
T ss_pred Cc-EEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcC-CCcEEE
Confidence 44 76654 333344443 2344 664 24554 8999999999999876543 4445533 245777
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 011531 420 MKDTCDGSIIEKLVRDLM 437 (483)
Q Consensus 420 l~~~~~~~~l~~~i~~ll 437 (483)
++ .-+.++++++|.+++
T Consensus 714 V~-P~D~eaLA~aI~~lL 730 (815)
T PLN00142 714 ID-PYHGDEAANKIADFF 730 (815)
T ss_pred eC-CCCHHHHHHHHHHHH
Confidence 74 357888888887765
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=0.0016 Score=63.35 Aligned_cols=315 Identities=15% Similarity=0.147 Sum_probs=172.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEe-CCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCH
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVN-TDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTA 86 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~ 86 (483)
.+-+---+.|-++-.++|.++|.++ ++.|++-+ |+.-.+.+.+..+ +.+...-+|-+.+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--------~~v~h~YlP~D~~---------- 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--------DSVIHQYLPLDLP---------- 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--------CCeEEEecCcCch----------
Confidence 4445556789999999999999999 88888777 4444455544433 1244555552111
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCc-chHHHHHHcCCCeEEEecchhHHHHHHHhhhhhhhC
Q 011531 87 KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCF-LTLDVSEELQIPLLALRTHNASYSWIYFLLPKLVED 165 (483)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~-~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (483)
..+..+++.+ +||++|.-....| +...-+++.|+|.+.+..=
T Consensus 113 ------------~~v~rFl~~~--------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR----------------- 155 (419)
T COG1519 113 ------------IAVRRFLRKW--------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR----------------- 155 (419)
T ss_pred ------------HHHHHHHHhc--------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-----------------
Confidence 2356677774 6998887766665 1333566789999997430
Q ss_pred CCCCCCCCCCCCCccccCCCCCCccCCCCCCccccCCCCChHHHHHHHHHhhhcccccEEEEecCCCCHHHHHHHhhcc-
Q 011531 166 GHIPFPDENMEKPVAGIPGFENFLRNRDLPGTCRVKTSDDDYLLQFFIGETFAMTRASALILNTFEIEAPVVSLLGSHF- 244 (483)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~l~~~~~~~~~~~~- 244 (483)
++. +-..+| . ..+.+.+. ...+.+.++..|. .-.+.+...-
T Consensus 156 -------------------LS~----rS~~~y--------~-k~~~~~~~--~~~~i~li~aQse----~D~~Rf~~LGa 197 (419)
T COG1519 156 -------------------LSD----RSFARY--------A-KLKFLARL--LFKNIDLILAQSE----EDAQRFRSLGA 197 (419)
T ss_pred -------------------ech----hhhHHH--------H-HHHHHHHH--HHHhcceeeecCH----HHHHHHHhcCC
Confidence 111 000000 0 01111111 1145556666554 1111112222
Q ss_pred CcceeeCCcccccccccccCCCCCCCCCCCCcccccccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHhCC--C
Q 011531 245 TKIYTIGPLHELRKSRMKDINSPSVSSSGILQTEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRG--Q 322 (483)
Q Consensus 245 ~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~--~ 322 (483)
+++...|.+-......+ .....-..+...++. +++ +.|..+|.. ...+.+-....++.+.. .
T Consensus 198 ~~v~v~GNlKfd~~~~~------------~~~~~~~~~r~~l~~--~r~-v~iaaSTH~-GEeei~l~~~~~l~~~~~~~ 261 (419)
T COG1519 198 KPVVVTGNLKFDIEPPP------------QLAAELAALRRQLGG--HRP-VWVAASTHE-GEEEIILDAHQALKKQFPNL 261 (419)
T ss_pred cceEEecceeecCCCCh------------hhHHHHHHHHHhcCC--CCc-eEEEecCCC-chHHHHHHHHHHHHhhCCCc
Confidence 44677777765433110 000001123333331 133 556666633 34444555566665543 3
Q ss_pred eEEEEEcCCccC--------CCCCCCCCChhhhhhcCCCceeEEeccC-HHHHhccCCccc-----eeeccCchhHHHHH
Q 011531 323 RFLLVVRPDLIL--------GEPGAAETPLAQNEGTEERNRFIVSWAP-QEEVLAHPAVGG-----FLTHGGWNSTLEGI 388 (483)
Q Consensus 323 ~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~~~~-----~ItHgG~gs~~eal 388 (483)
..||+=+=++.- ..|.....-+....-.++.+|.+.+-+- ...++.-+++ + ++-+||.| ..|++
T Consensus 262 llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa 339 (419)
T COG1519 262 LLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPA 339 (419)
T ss_pred eEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHH
Confidence 455554321110 0000000000000001221377777765 3445555555 3 34588886 68999
Q ss_pred HhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 389 AAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 389 ~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
++|+|+|.=|+..-|.+-++++.+ .|.|+.++ +++.+.+++..++.|
T Consensus 340 ~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~v~---~~~~l~~~v~~l~~~ 386 (419)
T COG1519 340 AFGTPVIFGPYTFNFSDIAERLLQ-AGAGLQVE---DADLLAKAVELLLAD 386 (419)
T ss_pred HcCCCEEeCCccccHHHHHHHHHh-cCCeEEEC---CHHHHHHHHHHhcCC
Confidence 999999999999999999999965 89999995 388889999988884
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.13 E-value=0.001 Score=66.89 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=56.4
Q ss_pred ceeEEeccCH-HHHhccCCcccee--ec--cCch-hHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHH
Q 011531 354 NRFIVSWAPQ-EEVLAHPAVGGFL--TH--GGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGS 427 (483)
Q Consensus 354 nv~~~~~~p~-~~ll~~~~~~~~I--tH--gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 427 (483)
||.+.+++++ ..+++.+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. ...+ .|.|..+. -+.+
T Consensus 281 ~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~-~~~g~lv~--~~~~ 350 (397)
T TIGR03087 281 GVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDAL-PGAELLVA--ADPA 350 (397)
T ss_pred CeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cccc-CCcceEeC--CCHH
Confidence 4999999985 568878887 55 32 4554 699999999999998864322 1112 46677663 5899
Q ss_pred HHHHHHHHHHhH
Q 011531 428 IIEKLVRDLMEN 439 (483)
Q Consensus 428 ~l~~~i~~ll~~ 439 (483)
+++++|.++++|
T Consensus 351 ~la~ai~~ll~~ 362 (397)
T TIGR03087 351 DFAAAILALLAN 362 (397)
T ss_pred HHHHHHHHHHcC
Confidence 999999999986
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.10 E-value=0.0036 Score=62.18 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=54.8
Q ss_pred eeEEeccC-HHHHhccCCcccee--ec--cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHH
Q 011531 355 RFIVSWAP-QEEVLAHPAVGGFL--TH--GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSII 429 (483)
Q Consensus 355 v~~~~~~p-~~~ll~~~~~~~~I--tH--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 429 (483)
+.+.++.. ...+++.+++ +| ++ |--.++.||+++|+|+|+....+ +...+.+ -..|..+ ..-+.+++
T Consensus 257 v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~-~~~g~~~-~~~d~~~l 328 (374)
T TIGR03088 257 VWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQH-GVTGALV-PPGDAVAL 328 (374)
T ss_pred EEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcC-CCceEEe-CCCCHHHH
Confidence 66666554 4678888887 55 33 33469999999999999977543 4445532 3456666 34578999
Q ss_pred HHHHHHHHhH
Q 011531 430 EKLVRDLMEN 439 (483)
Q Consensus 430 ~~~i~~ll~~ 439 (483)
+++|.+++++
T Consensus 329 a~~i~~l~~~ 338 (374)
T TIGR03088 329 ARALQPYVSD 338 (374)
T ss_pred HHHHHHHHhC
Confidence 9999999986
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.09 E-value=0.0014 Score=64.27 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=56.0
Q ss_pred ceeEEeccCHH---HHhccCCccceeec----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
|+.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+....+ ....+ + ..|..+. .-+.
T Consensus 254 ~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~--~~~~~~~-~~~~ 323 (365)
T cd03809 254 RVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-G--DAALYFD-PLDP 323 (365)
T ss_pred eEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-c--CceeeeC-CCCH
Confidence 49999999865 46777776 4422 23458999999999999865532 12222 2 2233342 3478
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHH
Q 011531 427 SIIEKLVRDLMENKREEIMGSTDR 450 (483)
Q Consensus 427 ~~l~~~i~~ll~~~~~~~~~~a~~ 450 (483)
+++.++|.+++.| +..+.+..+
T Consensus 324 ~~~~~~i~~l~~~--~~~~~~~~~ 345 (365)
T cd03809 324 EALAAAIERLLED--PALREELRE 345 (365)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHH
Confidence 9999999999987 555544433
No 92
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=0.001 Score=64.16 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=64.4
Q ss_pred ceeEE---eccCHHHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHH
Q 011531 354 NRFIV---SWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIE 430 (483)
Q Consensus 354 nv~~~---~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~ 430 (483)
|+.+. +|.+...+++++.+ ++|-.| |-.-||-..|+|++++=...++|. ++ + .|.-+.+. .+.+.|.
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lvg--~~~~~i~ 332 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILVG--TDEENIL 332 (383)
T ss_pred cEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEeC--ccHHHHH
Confidence 47665 67788999988887 999887 457899999999999999999996 44 4 45555543 5679999
Q ss_pred HHHHHHHhHhHHHHHHH
Q 011531 431 KLVRDLMENKREEIMGS 447 (483)
Q Consensus 431 ~~i~~ll~~~~~~~~~~ 447 (483)
+++.+++++ +++.++
T Consensus 333 ~~~~~ll~~--~~~~~~ 347 (383)
T COG0381 333 DAATELLED--EEFYER 347 (383)
T ss_pred HHHHHHhhC--hHHHHH
Confidence 999999997 555544
No 93
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.07 E-value=0.006 Score=60.90 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=52.7
Q ss_pred eeE-EeccCH---HHHhccCCccceeec---cC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCC
Q 011531 355 RFI-VSWAPQ---EEVLAHPAVGGFLTH---GG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCD 425 (483)
Q Consensus 355 v~~-~~~~p~---~~ll~~~~~~~~ItH---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~ 425 (483)
+.+ ..++++ ..++..+++ +|.= -| ..++.||+++|+|+|+.... .....+.+ -+.|..++ +..+
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~-~~~G~~~~~~~~~ 334 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVD-GETGFLVPPDNSD 334 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhC-CCceEEcCCCCCc
Confidence 554 367775 446877787 6642 22 34779999999999997653 34455533 45688775 3221
Q ss_pred ----HHHHHHHHHHHHhH
Q 011531 426 ----GSIIEKLVRDLMEN 439 (483)
Q Consensus 426 ----~~~l~~~i~~ll~~ 439 (483)
.+++.++|.++++|
T Consensus 335 ~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 335 ADGFQAELAKAINILLAD 352 (388)
T ss_pred ccchHHHHHHHHHHHHhC
Confidence 28999999999986
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.06 E-value=0.0067 Score=62.31 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCceeE-EeccCH--HHHhccCCccceee---ccCch-hHHHHHHhCCceecccccc--chhHHHHHHHHhhccceecC
Q 011531 351 EERNRFI-VSWAPQ--EEVLAHPAVGGFLT---HGGWN-STLEGIAAGVPMICWPQFS--DQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 351 ~~~nv~~-~~~~p~--~~ll~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~ 421 (483)
+.+ +.+ ..|-.. ..+++.+++ +|. +-|.| +.+||+++|+|.|+....+ |.-.+...-.+ .+.|..+
T Consensus 336 ~~~-v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv- 410 (466)
T PRK00654 336 PGK-VGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVF- 410 (466)
T ss_pred CCc-EEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEe-
Confidence 344 654 455222 257877777 664 33554 8889999999999875432 21111100012 2677777
Q ss_pred CCCCHHHHHHHHHHHHh
Q 011531 422 DTCDGSIIEKLVRDLME 438 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~ 438 (483)
..-+++++.++|.++++
T Consensus 411 ~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 411 DDFNAEDLLRALRRALE 427 (466)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 44688999999999987
No 95
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.97 E-value=0.00038 Score=68.87 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=79.3
Q ss_pred CCeEEEEecCccc--C-CCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhc--CCCceeEEeccC---
Q 011531 291 PKSVLYVSFGSLV--G-LTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGT--EERNRFIVSWAP--- 362 (483)
Q Consensus 291 ~~~vi~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p--- 362 (483)
+++.|+|++=-.. . ...+.+..+++++...+.+++++..... + +.. .....+.+.. ..+ +.+++.++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p--~~~-~i~~~i~~~~~~~~~-v~l~~~l~~~~ 274 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A--GSR-IINEAIEEYVNEHPN-FRLFKSLGQER 274 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C--Cch-HHHHHHHHHhcCCCC-EEEECCCChHH
Confidence 3467778775433 3 4457788899999887766666553210 1 110 0111111111 234 98887665
Q ss_pred HHHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHh
Q 011531 363 QEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLME 438 (483)
Q Consensus 363 ~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 438 (483)
...+++++++ +||-++.|- .||.+.|+|+|.+- +.+ .-+ + .|..+.+ =..+++.|.+++.+++.
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~-vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVID-VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEE-eCCCHHHHHHHHHHHhC
Confidence 4668878887 998886555 99999999999774 211 111 2 2433331 13578999999999654
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.95 E-value=0.00027 Score=69.19 Aligned_cols=140 Identities=12% Similarity=0.124 Sum_probs=81.7
Q ss_pred CCCeEEEEecCcccCCC-H---HHHHHHHHHHHhC-CCeEEEEEcCCccCCCCCCCCCChhhhhhcC--CCceeEEeccC
Q 011531 290 PPKSVLYVSFGSLVGLT-R---EQMSELWHGLVNR-GQRFLLVVRPDLILGEPGAAETPLAQNEGTE--ERNRFIVSWAP 362 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p 362 (483)
.+++.|+|++=...+.. + ..+..++.++... +.++||.+.... .......+... ++ +.+.+.++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p--------~~~~~i~~~l~~~~~-v~~~~~l~ 248 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP--------RGSDIIIEKLKKYDN-VRLIEPLG 248 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H--------HHHHHHHHHHTT-TT-EEEE----
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc--------hHHHHHHHHhcccCC-EEEECCCC
Confidence 66789999985555444 3 3455566677665 778898884211 11112222111 34 99986665
Q ss_pred ---HHHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 363 ---QEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 363 ---~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
+..+|+++++ +|+..| |-.-||.+.|+|+|.+ -|+...=.-+ + .|..+.+. .+.+.|.+++.+++.+
T Consensus 249 ~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-~-~~~nvlv~--~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 249 YEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-E-RGSNVLVG--TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH-H-TTSEEEET--SSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH-h-hcceEEeC--CCHHHHHHHHHHHHhC
Confidence 5668888888 999999 4444999999999999 3333332233 3 35555542 7999999999999985
Q ss_pred hHHHHHHHHHH
Q 011531 440 KREEIMGSTDR 450 (483)
Q Consensus 440 ~~~~~~~~a~~ 450 (483)
..+..+.+.
T Consensus 319 --~~~~~~~~~ 327 (346)
T PF02350_consen 319 --KDFYRKLKN 327 (346)
T ss_dssp --HHHHHHHHC
T ss_pred --hHHHHhhcc
Confidence 444444443
No 97
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.93 E-value=0.021 Score=56.84 Aligned_cols=76 Identities=18% Similarity=0.097 Sum_probs=50.8
Q ss_pred ceeEEeccCHHH---HhccCCcccee------eccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCC
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFL------THGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDT 423 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~I------tHgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 423 (483)
||.+.+++|+.+ .+++.++..+- +.++. ..+.|++++|+|+|..++ ...+ +..+ |..+..
T Consensus 255 nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~~- 324 (373)
T cd04950 255 NVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLIA- 324 (373)
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEeC-
Confidence 599999999655 57777873321 22333 358999999999998763 2223 3223 333322
Q ss_pred CCHHHHHHHHHHHHhH
Q 011531 424 CDGSIIEKLVRDLMEN 439 (483)
Q Consensus 424 ~~~~~l~~~i~~ll~~ 439 (483)
-+.+++.++|.+++.+
T Consensus 325 ~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 DDPEEFVAAIEKALLE 340 (373)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3899999999998774
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.92 E-value=0.016 Score=58.67 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCceeEEeccCHH---HHhccCCccceeec---cCc-hhHHHHHHhCCceeccccccchhHHHHHHH--HhhccceecC
Q 011531 351 EERNRFIVSWAPQE---EVLAHPAVGGFLTH---GGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVS--EVWKIGFDMK 421 (483)
Q Consensus 351 ~~~nv~~~~~~p~~---~ll~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~--~~~G~G~~l~ 421 (483)
.++ |.+.+++|+. .+|..+++ +|+- =|. -++.||+++|+|.|+.-..+.-. ..+. ..-..|...
T Consensus 304 ~~~-V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDK-VEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCe-EEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---heeeccCCCCceEEe-
Confidence 345 9999999865 47777776 5542 122 38899999999999866543211 1221 013466665
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011531 422 DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~~ 439 (483)
. +.++++++|.+++++
T Consensus 377 ~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 S--TAEEYAEAIEKILSL 392 (419)
T ss_pred C--CHHHHHHHHHHHHhC
Confidence 2 899999999999984
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.91 E-value=0.039 Score=57.04 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=84.0
Q ss_pred CCCCeEEEEecCcccCCCHHHHHHHHHHHH--hC--CCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCc---eeEEecc
Q 011531 289 QPPKSVLYVSFGSLVGLTREQMSELWHGLV--NR--GQRFLLVVRPDLILGEPGAAETPLAQNEGTEERN---RFIVSWA 361 (483)
Q Consensus 289 ~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~n---v~~~~~~ 361 (483)
.+++++|-+-.||-...=...+..++++.+ .. ..+++.....+ ...+.+++...+.+ +.++.--
T Consensus 410 ~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~ 480 (608)
T PRK01021 410 PSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQ 480 (608)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCc
Confidence 346788999999877544455556666665 33 33444332110 11122222121111 2333210
Q ss_pred CHHHHhccCCccceeeccCchhHHHHHHhCCceeccc-cccchhHHHHHHHHh----h-----cccee-----c--CCCC
Q 011531 362 PQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWP-QFSDQLVNSRCVSEV----W-----KIGFD-----M--KDTC 424 (483)
Q Consensus 362 p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~----~-----G~G~~-----l--~~~~ 424 (483)
...++++.+++ .+.-+|. .+.|+...|+|||++= ...=-...++++.+- . =+|.. + .+.+
T Consensus 481 ~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~ 557 (608)
T PRK01021 481 FRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDF 557 (608)
T ss_pred chHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccC
Confidence 12578877776 8877776 5789999999998853 322333455666430 0 11222 2 1367
Q ss_pred CHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHH
Q 011531 425 DGSIIEKLVRDLMEN--KREEIMGSTDRVATMA 455 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~--~~~~~~~~a~~l~~~~ 455 (483)
+++.|.+++ ++|.| +.+++++..+++++.+
T Consensus 558 tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 558 QPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred CHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 899999997 77774 2244555555555555
No 100
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.90 E-value=0.015 Score=58.82 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=51.2
Q ss_pred EEeccCHHHHhccCCccceeecc----CchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHH
Q 011531 357 IVSWAPQEEVLAHPAVGGFLTHG----GWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKL 432 (483)
Q Consensus 357 ~~~~~p~~~ll~~~~~~~~ItHg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~ 432 (483)
+.++.+...++...++ ||.-+ =-.++.||+++|+|+|+....+. ..+.+ -+-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~-~~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQ-FPNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeec-CCceEec---CCHHHHHHH
Confidence 4566667779977776 88663 24689999999999999875542 33422 3444444 268899999
Q ss_pred HHHHHhH
Q 011531 433 VRDLMEN 439 (483)
Q Consensus 433 i~~ll~~ 439 (483)
|.++|++
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999984
No 101
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.88 E-value=0.0044 Score=60.83 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHh---C--CCeEEEEEcCCccCCCCCCCCCChhhhh---hcCCCceeEE-ec
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVN---R--GQRFLLVVRPDLILGEPGAAETPLAQNE---GTEERNRFIV-SW 360 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~-~~ 360 (483)
+++++|.+--||....=...+..++++.+. . +.++++..-.. .....+.. ....+ +.+. ..
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~---------~~~~~i~~~~~~~~~~-~~~~~~~ 251 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE---------VHEELIEEILAEYPPD-VSIVIIE 251 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH---------HHHHHHHHHHHhhCCC-CeEEEcC
Confidence 567889999998775333334445555433 2 33555443211 11111111 11122 3332 22
Q ss_pred cCHHHHhccCCccceeeccCchhHHHHHHhCCceecccc-ccchhHHHHHHHHhhcccee------------cCCCCCHH
Q 011531 361 APQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ-FSDQLVNSRCVSEVWKIGFD------------MKDTCDGS 427 (483)
Q Consensus 361 ~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~~------------l~~~~~~~ 427 (483)
-.-.++|..+++ .+.-.|. .+.|+...|+|||++=- ..=....|+++++--=+|+. +.+.++++
T Consensus 252 ~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 252 GESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred CchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHH
Confidence 234567877776 6666664 67899999999987643 23344456666431111111 11488999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011531 428 IIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYR 467 (483)
Q Consensus 428 ~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 467 (483)
.|.+++.++|+| +..++..+...+.+++....|.++..
T Consensus 329 ~i~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 329 NIAAELLELLEN--PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 999999999997 54466666666666666555655443
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.062 Score=57.44 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCceeEEeccCH-HHHhccCCccceee---ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCC
Q 011531 352 ERNRFIVSWAPQ-EEVLAHPAVGGFLT---HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCD 425 (483)
Q Consensus 352 ~~nv~~~~~~p~-~~ll~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~ 425 (483)
++ |.+.+|.+. ..+|..+++ +|. +.|. +++.||+++|+|+|+....+ ....+.+ -..|..++ +..+
T Consensus 574 ~~-V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~d-g~~GlLv~~~d~~ 645 (694)
T PRK15179 574 ER-ILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQE-GVTGLTLPADTVT 645 (694)
T ss_pred Cc-EEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccC-CCCEEEeCCCCCC
Confidence 44 999999874 568877777 554 4554 68999999999999987532 3445533 34688876 5667
Q ss_pred HHHHHHHHHHHHhH--hHHHHHHHHHHH
Q 011531 426 GSIIEKLVRDLMEN--KREEIMGSTDRV 451 (483)
Q Consensus 426 ~~~l~~~i~~ll~~--~~~~~~~~a~~l 451 (483)
.+.+.+++.+++.+ ..+.+++++++.
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 77777777776651 115566555443
No 103
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.84 E-value=0.036 Score=57.10 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=53.3
Q ss_pred CCCceeEEeccCHH---HHhccCCccceeec---cCch-hHHHHHHhCCceeccccccchhHHHHHHHH-----hhccce
Q 011531 351 EERNRFIVSWAPQE---EVLAHPAVGGFLTH---GGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSE-----VWKIGF 418 (483)
Q Consensus 351 ~~~nv~~~~~~p~~---~ll~~~~~~~~ItH---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-----~~G~G~ 418 (483)
+.+ +.+....+.. .+++.+++ +|.- -|.| +.+||+++|+|.|+....+ ....+.+ ..+.|.
T Consensus 345 ~~~-v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~ 417 (473)
T TIGR02095 345 PGN-VRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGF 417 (473)
T ss_pred CCc-EEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceE
Confidence 344 7776666643 47877777 6632 2444 7889999999999876543 1112211 126777
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q 011531 419 DMKDTCDGSIIEKLVRDLME 438 (483)
Q Consensus 419 ~l~~~~~~~~l~~~i~~ll~ 438 (483)
.+ ...++++++++|.+++.
T Consensus 418 l~-~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 418 LF-EEYDPGALLAALSRALR 436 (473)
T ss_pred Ee-CCCCHHHHHHHHHHHHH
Confidence 77 44688999999999987
No 104
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00026 Score=56.98 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=69.3
Q ss_pred EEEecCcccCCCHHHHHH--HHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccC-HHHHhccCC
Q 011531 295 LYVSFGSLVGLTREQMSE--LWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAP-QEEVLAHPA 371 (483)
Q Consensus 295 i~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~ 371 (483)
||||-||....-...+.. +.+-.+....++|..++. .+..|-. .-. ++-.++-+ .+.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn--------~d~kpva-----gl~-v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGN--------GDIKPVA-----GLR-VYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecC--------CCccccc-----ccE-EEeechHHHHHHHhhcce
Confidence 789999985422222222 333334444578988843 2233320 001 33334445 455675666
Q ss_pred ccceeeccCchhHHHHHHhCCceecccccc--------chhHHHHHHHHhhccceecC
Q 011531 372 VGGFLTHGGWNSTLEGIAAGVPMICWPQFS--------DQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 372 ~~~~ItHgG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~l~ 421 (483)
+ +|+|+|.||+..++..++|+|++|-.. .|-..|..+++ .+.=....
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 5 999999999999999999999999754 57777877765 55555543
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.76 E-value=0.0098 Score=61.30 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=51.7
Q ss_pred CCCceeEEeccCHH---HHhccCCccceeec---cCc-hhHHHHHHhCCceecccccc--chhHHHHHHHHhhccceecC
Q 011531 351 EERNRFIVSWAPQE---EVLAHPAVGGFLTH---GGW-NSTLEGIAAGVPMICWPQFS--DQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 351 ~~~nv~~~~~~p~~---~ll~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~ 421 (483)
+++ +.+....++. .+++.+++ ++.- -|. -+.+||+++|+|+|+....+ |.-.+...-.+ .|.|..+
T Consensus 350 ~~~-v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~- 424 (476)
T cd03791 350 PGR-VAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVF- 424 (476)
T ss_pred CCc-EEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEe-
Confidence 344 7765444433 46777776 6632 233 37789999999999876543 21111100001 3578887
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011531 422 DTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~~ 439 (483)
...+.+++.++|.++++.
T Consensus 425 ~~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 425 EGYNADALLAALRRALAL 442 (476)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 445789999999999873
No 106
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.65 E-value=0.017 Score=57.45 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=51.1
Q ss_pred eeEEecc--CH---HHHhccCCccceeecc---Cc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCC
Q 011531 355 RFIVSWA--PQ---EEVLAHPAVGGFLTHG---GW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCD 425 (483)
Q Consensus 355 v~~~~~~--p~---~~ll~~~~~~~~ItHg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 425 (483)
+.+..+. ++ ..+++.+++ |+.-. |. .++.||+++|+|+|+....+ ....+.+ -..|...+ +
T Consensus 254 v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~-~~~g~~~~---~ 323 (372)
T cd03792 254 IHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIED-GETGFLVD---T 323 (372)
T ss_pred eEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhccc-CCceEEeC---C
Confidence 8888776 43 346767776 77533 33 49999999999999876533 2234432 35566553 4
Q ss_pred HHHHHHHHHHHHhH
Q 011531 426 GSIIEKLVRDLMEN 439 (483)
Q Consensus 426 ~~~l~~~i~~ll~~ 439 (483)
.+.++++|.+++++
T Consensus 324 ~~~~a~~i~~ll~~ 337 (372)
T cd03792 324 VEEAAVRILYLLRD 337 (372)
T ss_pred cHHHHHHHHHHHcC
Confidence 67788899999986
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.64 E-value=0.009 Score=61.63 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=60.8
Q ss_pred eeEEeccCHHHHhccCCccceee---ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-C--CCC--
Q 011531 355 RFIVSWAPQEEVLAHPAVGGFLT---HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-D--TCD-- 425 (483)
Q Consensus 355 v~~~~~~p~~~ll~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~--~~~-- 425 (483)
|.+.++.+...++..+++ +|. .=|. .++.||+++|+|+|+....+- +...+.+ -.-|..++ . .-+
T Consensus 378 V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~~-g~nG~lv~~~~~~~d~~ 451 (500)
T TIGR02918 378 IHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIED-NKNGYLIPIDEEEDDED 451 (500)
T ss_pred EEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHccC-CCCEEEEeCCccccchh
Confidence 888898888889988887 664 3344 589999999999999765311 2334422 23566664 1 223
Q ss_pred --HHHHHHHHHHHHhH-hHHHHHHHHHHHHH
Q 011531 426 --GSIIEKLVRDLMEN-KREEIMGSTDRVAT 453 (483)
Q Consensus 426 --~~~l~~~i~~ll~~-~~~~~~~~a~~l~~ 453 (483)
.++++++|.+++++ ....+.+++.+.++
T Consensus 452 ~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~ 482 (500)
T TIGR02918 452 QIITALAEKIVEYFNSNDIDAFHEYSYQIAE 482 (500)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 78899999999963 22334444444433
No 108
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.58 E-value=0.0038 Score=62.67 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=77.4
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhh--cCCCceeEEeccCHHHHh
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEG--TEERNRFIVSWAPQEEVL 367 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~~ll 367 (483)
++..++|.||....+.+++.+..-.+.++..+.-.+|..+.+.. +. ..+...+.+. .+++ +.+.++.|+.+-|
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~---~~-~~l~~~~~~~Gv~~~R-i~f~~~~~~~ehl 356 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS---GE-ARLRRRFAAHGVDPDR-IIFSPVAPREEHL 356 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT---HH-HHHHHHHHHTTS-GGG-EEEEE---HHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH---HH-HHHHHHHHHcCCChhh-EEEcCCCCHHHHH
Confidence 56679999999999999999998888888888888998854311 00 0111111111 2345 8888888865433
Q ss_pred ---ccCCcccee---eccCchhHHHHHHhCCceeccccccchhHHH-HHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 368 ---AHPAVGGFL---THGGWNSTLEGIAAGVPMICWPQFSDQLVNS-RCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 368 ---~~~~~~~~I---tHgG~gs~~eal~~GvP~l~~P~~~DQ~~na-~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
...++ ++ ..+|..|++|||+.|||+|.+|--.=.-..+ ..+ ..+|+...+- .+.++-.+.--++-+|
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA--~s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA--DSEEEYVEIAVRLATD 430 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---SSHHHHHHHHHHHHH-
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC--CCHHHHHHHHHHHhCC
Confidence 33444 54 4678899999999999999999654444444 444 4578877664 3456655555555555
No 109
>PLN02949 transferase, transferring glycosyl groups
Probab=97.53 E-value=0.14 Score=52.39 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=51.9
Q ss_pred CCCceeEEeccCHHH---HhccCCccceee---ccCch-hHHHHHHhCCceeccccccchhHHHHHHHHh-hc-cceecC
Q 011531 351 EERNRFIVSWAPQEE---VLAHPAVGGFLT---HGGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSEV-WK-IGFDMK 421 (483)
Q Consensus 351 ~~~nv~~~~~~p~~~---ll~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-~G-~G~~l~ 421 (483)
.++ |.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.+. .| .|...
T Consensus 334 ~~~-V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~- 406 (463)
T PLN02949 334 DGD-VEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA- 406 (463)
T ss_pred CCc-EEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC-
Confidence 455 99999998654 6767766 663 23444 799999999999998764310 0111110 02 23333
Q ss_pred CCCCHHHHHHHHHHHHh
Q 011531 422 DTCDGSIIEKLVRDLME 438 (483)
Q Consensus 422 ~~~~~~~l~~~i~~ll~ 438 (483)
. +.++++++|.++++
T Consensus 407 ~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 407 T--TVEEYADAILEVLR 421 (463)
T ss_pred C--CHHHHHHHHHHHHh
Confidence 2 88999999999998
No 110
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.49 E-value=0.0035 Score=63.15 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=58.7
Q ss_pred ceeEEeccCHHH---HhccCCccceeeccC----chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAPQEE---VLAHPAVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p~~~---ll~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
+|.+.+|+++.+ ++...++.+||...- -.+++||+++|+|+|+....+ ....+.+ .+.|..+....+.
T Consensus 290 ~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~-~~~G~l~~~~~~~ 364 (407)
T cd04946 290 SVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDN-GGNGLLLSKDPTP 364 (407)
T ss_pred eEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcC-CCcEEEeCCCCCH
Confidence 488999999754 554444445765442 358999999999999865433 4556633 3478887655689
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
++++++|.++++|
T Consensus 365 ~~la~~I~~ll~~ 377 (407)
T cd04946 365 NELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 111
>PLN02316 synthase/transferase
Probab=97.46 E-value=0.17 Score=56.11 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCCceeEEeccCHH---HHhccCCccceeec---cCc-hhHHHHHHhCCceecccccc--chhHHH----HHHH--Hhhc
Q 011531 351 EERNRFIVSWAPQE---EVLAHPAVGGFLTH---GGW-NSTLEGIAAGVPMICWPQFS--DQLVNS----RCVS--EVWK 415 (483)
Q Consensus 351 ~~~nv~~~~~~p~~---~ll~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na----~~v~--~~~G 415 (483)
+++ |.+....+.. .+++.+++ |+.- =|. -+.+||+++|+|.|+....+ |.-... .+.+ ..-+
T Consensus 899 ~~r-V~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~ 975 (1036)
T PLN02316 899 HDR-ARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEP 975 (1036)
T ss_pred CCe-EEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCC
Confidence 345 7777555543 58877776 7743 233 48999999999988865533 222111 0000 0013
Q ss_pred cceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCC
Q 011531 416 IGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGS 464 (483)
Q Consensus 416 ~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~ 464 (483)
-|... ...+++.|..+|.++|.. |....+.+++..+..+...-+
T Consensus 976 tGflf-~~~d~~aLa~AL~raL~~----~~~~~~~~~~~~r~~m~~dFS 1019 (1036)
T PLN02316 976 NGFSF-DGADAAGVDYALNRAISA----WYDGRDWFNSLCKRVMEQDWS 1019 (1036)
T ss_pred ceEEe-CCCCHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhCC
Confidence 56666 567899999999999974 233344445555544433333
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.45 E-value=0.0091 Score=59.58 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=71.6
Q ss_pred CCCceeEEeccCHHH---HhccCCccceeec----cCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCC
Q 011531 351 EERNRFIVSWAPQEE---VLAHPAVGGFLTH----GGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKD 422 (483)
Q Consensus 351 ~~~nv~~~~~~p~~~---ll~~~~~~~~ItH----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 422 (483)
..+ +.+.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+....+ +...+.+ -..|..+..
T Consensus 256 ~~~-v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~-~~~G~~l~~ 327 (380)
T PRK15484 256 GDR-CIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLE-GITGYHLAE 327 (380)
T ss_pred CCc-EEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhccc-CCceEEEeC
Confidence 344 88999998644 5877887 6542 343 57889999999999987633 3445533 356765544
Q ss_pred CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011531 423 TCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIR 477 (483)
Q Consensus 423 ~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~ 477 (483)
..+.++++++|.++++| +..+ ++++..++...+.-+-...++++.+-|.
T Consensus 328 ~~d~~~la~~I~~ll~d--~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 328 PMTSDSIISDINRTLAD--PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred CCCHHHHHHHHHHHHcC--HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56899999999999997 5433 3333333322223333444555555443
No 113
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.39 E-value=0.007 Score=60.97 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=69.8
Q ss_pred CCceeEEeccCHHH---HhccCCccceeec---------cCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccce
Q 011531 352 ERNRFIVSWAPQEE---VLAHPAVGGFLTH---------GGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGF 418 (483)
Q Consensus 352 ~~nv~~~~~~p~~~---ll~~~~~~~~ItH---------gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 418 (483)
++ |.+.+|+|+.+ ++..+++ +|.- -|. .++.||+++|+|+|+....+ ....+ +.-..|.
T Consensus 279 ~~-V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 279 DV-VEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred Ce-EEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 44 99999999754 6767777 6642 344 56899999999999976543 33445 3234677
Q ss_pred ecCCCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011531 419 DMKDTCDGSIIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 419 ~l~~~~~~~~l~~~i~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l 476 (483)
.+ ..-+.++++++|.++++ | ++. .++|++..++.+.+.-+.....+++.+-+
T Consensus 351 lv-~~~d~~~la~ai~~l~~~d--~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 351 LV-PENDAQALAQRLAAFSQLD--TDE---LAPVVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred Ee-CCCCHHHHHHHHHHHHhCC--HHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66 34589999999999998 6 432 22333333332222333344455555444
No 114
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.32 E-value=0.0014 Score=64.09 Aligned_cols=95 Identities=19% Similarity=0.396 Sum_probs=69.8
Q ss_pred ceeEEeccCHHHHh---ccCCccceeec-------cCc------hhHHHHHHhCCceeccccccchhHHHHHHHHhhccc
Q 011531 354 NRFIVSWAPQEEVL---AHPAVGGFLTH-------GGW------NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIG 417 (483)
Q Consensus 354 nv~~~~~~p~~~ll---~~~~~~~~ItH-------gG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 417 (483)
||.+.+|+|++++. .. +.+++... +.+ +-+.+++++|+|+|+. ++...+..|.+ .++|
T Consensus 208 ~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~~~G 281 (333)
T PRK09814 208 NISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-NGLG 281 (333)
T ss_pred CeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-CCce
Confidence 49999999987653 33 33222211 111 1277789999999985 45667788855 7999
Q ss_pred eecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011531 418 FDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARD 457 (483)
Q Consensus 418 ~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~ 457 (483)
..++ +.+++.+++.++..++...|++|++++++.+++
T Consensus 282 ~~v~---~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 282 FVVD---SLEELPEIIDNITEEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred EEeC---CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 9995 667899999987665557899999999999987
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.24 E-value=0.0033 Score=54.85 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=58.9
Q ss_pred CCceeEEeccCH---HHHhccCCccceeec----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCC
Q 011531 352 ERNRFIVSWAPQ---EEVLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTC 424 (483)
Q Consensus 352 ~~nv~~~~~~p~---~~ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 424 (483)
.+ +.+..+.++ ..++..+++ +|+. |...++.||+++|+|+|+.. ...+...+.+ .+.|..++. .
T Consensus 73 ~~-i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~-~~~g~~~~~-~ 143 (172)
T PF00534_consen 73 EN-IIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIND-GVNGFLFDP-N 143 (172)
T ss_dssp TT-EEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGT-TTSEEEEST-T
T ss_pred cc-cccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeecc-ccceEEeCC-C
Confidence 44 999999982 557877777 7766 55679999999999999744 4555566643 466888863 3
Q ss_pred CHHHHHHHHHHHHhH
Q 011531 425 DGSIIEKLVRDLMEN 439 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~ 439 (483)
+.+++.++|.+++.+
T Consensus 144 ~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 144 DIEELADAIEKLLND 158 (172)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC
Confidence 999999999999997
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.19 E-value=0.11 Score=53.41 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=55.6
Q ss_pred ceeEEeccCHHHHhccCCccceeec----cCchhHHHHHHhCCceeccccccchhHHHHHHHHhh-----c-cceecCCC
Q 011531 354 NRFIVSWAPQEEVLAHPAVGGFLTH----GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVW-----K-IGFDMKDT 423 (483)
Q Consensus 354 nv~~~~~~p~~~ll~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~-----G-~G~~l~~~ 423 (483)
||.+.+.....++++.+++ +|.- |--.++.||+++|+|+|+... ......+ +.. | .|..+ ..
T Consensus 355 ~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv-~~ 426 (475)
T cd03813 355 NVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVV-PP 426 (475)
T ss_pred eEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEE-CC
Confidence 3888886666788877776 5533 223689999999999999543 3334444 321 2 56666 45
Q ss_pred CCHHHHHHHHHHHHhH
Q 011531 424 CDGSIIEKLVRDLMEN 439 (483)
Q Consensus 424 ~~~~~l~~~i~~ll~~ 439 (483)
.+.++++++|.++++|
T Consensus 427 ~d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 ADPEALARAILRLLKD 442 (475)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 6899999999999996
No 117
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.11 E-value=0.0023 Score=62.96 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=79.9
Q ss_pred EEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHH---HHhccCCc
Q 011531 296 YVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQE---EVLAHPAV 372 (483)
Q Consensus 296 ~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~ 372 (483)
++..|+... ...+..++++++..+.+++++-.. .....+.+...++ |.+.+++|+. .+++.+++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g----------~~~~~l~~~~~~~-V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDG----------PELDRLRAKAGPN-VTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECC----------hhHHHHHhhcCCC-EEEecCCCHHHHHHHHHhCCE
Confidence 455666553 223555777777777665544321 1112333334455 9999999974 47877887
Q ss_pred cceeeccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 373 GGFLTHGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 373 ~~~ItHgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
-++-+.-|. -++.||+++|+|+|+....+ ....+.+ .+.|..++ .-+.+.++++|.+++++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~-~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFE-EQTVESLAAAVERFEKN 326 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeC-CCCHHHHHHHHHHHHhC
Confidence 333234444 36789999999999986543 2334433 46787774 34788999999999987
No 118
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.31 Score=47.30 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=93.7
Q ss_pred ccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHhC-----CCeEEEEEcCCccCCCCCCCCCChhhhhhcC-CCceeEE
Q 011531 285 WLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNR-----GQRFLLVVRPDLILGEPGAAETPLAQNEGTE-ERNRFIV 358 (483)
Q Consensus 285 ~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~ 358 (483)
-+....+++++.+-.||-...-...+..+.++.+.+ +.+++.-+...... ........... ..+..+.
T Consensus 181 ~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~------~~~~~~~~~~~~~~~~~~~ 254 (381)
T COG0763 181 KLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYR------RIIEEALKWEVAGLSLILI 254 (381)
T ss_pred HhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHH------HHHHHHhhccccCceEEec
Confidence 343356778899999997753333333344444332 34666544221100 01111110000 0112222
Q ss_pred eccCHHHHhccCCccceeeccCchhHHHHHHhCCceeccccc-cchhHHHHHHHHhhccce-----------e-cCCCCC
Q 011531 359 SWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQF-SDQLVNSRCVSEVWKIGF-----------D-MKDTCD 425 (483)
Q Consensus 359 ~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~G~G~-----------~-l~~~~~ 425 (483)
+.- -.+++..+++ .+.-+|. -+.|+..+|+|||+.=-. .=-...+++..+-.=+++ . +.+.++
T Consensus 255 ~~~-~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~ 330 (381)
T COG0763 255 DGE-KRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCT 330 (381)
T ss_pred Cch-HHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcC
Confidence 211 1346655665 7767775 468999999999875221 112223444332111111 1 114789
Q ss_pred HHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011531 426 GSIIEKLVRDLMENK--REEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIR 477 (483)
Q Consensus 426 ~~~l~~~i~~ll~~~--~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~ 477 (483)
++.|.+++..+++|. ...+++...+|.+.++. ++++..+++.+++.+.
T Consensus 331 pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 331 PENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhc
Confidence 999999999999962 13566666666666654 5566777777776653
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.06 E-value=0.55 Score=49.55 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=51.4
Q ss_pred eeEEeccCHH-HHhccCCccceeec---cC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHH
Q 011531 355 RFIVSWAPQE-EVLAHPAVGGFLTH---GG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSII 429 (483)
Q Consensus 355 v~~~~~~p~~-~ll~~~~~~~~ItH---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 429 (483)
+.+.++.++. .+++..++ ||.= =| -.++.||+++|+|+|+....+... + . .|.+..+. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~-~g~nGll~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-R-SFPNCLTY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-e-ecCCeEec--CCHHHH
Confidence 6666777754 58877776 7652 23 358999999999999988765321 2 2 13222232 468999
Q ss_pred HHHHHHHHhH
Q 011531 430 EKLVRDLMEN 439 (483)
Q Consensus 430 ~~~i~~ll~~ 439 (483)
+++|.++|++
T Consensus 672 AeAI~~LLsd 681 (794)
T PLN02501 672 VAKVKEALAN 681 (794)
T ss_pred HHHHHHHHhC
Confidence 9999999996
No 120
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.03 E-value=0.44 Score=48.01 Aligned_cols=99 Identities=10% Similarity=0.152 Sum_probs=69.8
Q ss_pred HHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhcccee-cC-CCCCHHHHHHHHHHHHhHhHH
Q 011531 365 EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFD-MK-DTCDGSIIEKLVRDLMENKRE 442 (483)
Q Consensus 365 ~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~-~~~~~~~l~~~i~~ll~~~~~ 442 (483)
.+++++++ +|..= +=++.-|+..|||.+.++. | +-....+.+ +|.... ++ +.++.++|.+.+.++++|+ +
T Consensus 323 ~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~l~~~~Li~~v~~~~~~r-~ 394 (426)
T PRK10017 323 KILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRHLLDGSLQAMVADTLGQL-P 394 (426)
T ss_pred HHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhhCCHHHHHHHHHHHHhCH-H
Confidence 67866665 88532 2256678999999999998 3 334444534 788866 55 7899999999999999964 6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011531 443 EIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIR 477 (483)
Q Consensus 443 ~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~ 477 (483)
.++++.++--+.++.. ..+.+.+++.++.
T Consensus 395 ~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~ 423 (426)
T PRK10017 395 ALNARLAEAVSRERQT------GMQMVQSVLERIG 423 (426)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHhc
Confidence 6777766666666552 2456777776654
No 121
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.59 E-value=0.66 Score=43.58 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC-chhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHH-HHHHH
Q 011531 15 YPLQGHIKPMMSLAELLGSANFQVTFVNTDH-NHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAK-DVFDA 92 (483)
Q Consensus 15 ~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~-~~~~~ 92 (483)
.+..-|+.-+..|-++|.++||+|.+.+-+. ...++....+ +.+..+... -...+. .....
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg----------f~~~~Igk~-------g~~tl~~Kl~~~ 69 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG----------FPYKSIGKH-------GGVTLKEKLLES 69 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC----------CCeEeeccc-------CCccHHHHHHHH
Confidence 3455799999999999999999999777543 2334444443 555555421 112222 11221
Q ss_pred HHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 93 MKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
..+ .-.+.++..+ .+||+.+. -..+. +.-+|.-+|+|.+.+.-.
T Consensus 70 ~eR--~~~L~ki~~~--------~kpdv~i~-~~s~~-l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 70 AER--VYKLSKIIAE--------FKPDVAIG-KHSPE-LPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHH--HHHHHHHHhh--------cCCceEee-cCCcc-hhhHHhhcCCceEEecCC
Confidence 111 1123444444 68999999 45677 899999999999998654
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.48 E-value=0.013 Score=48.70 Aligned_cols=126 Identities=20% Similarity=0.182 Sum_probs=65.9
Q ss_pred EEEecCcccC-CCHHHHHH-HHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccC-HHHHhccCC
Q 011531 295 LYVSFGSLVG-LTREQMSE-LWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAP-QEEVLAHPA 371 (483)
Q Consensus 295 i~vs~Gs~~~-~~~~~~~~-~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~ 371 (483)
.++++|+... ...+.+.. +++.+.+...++-+.+- |. .++.+.+....+ |.+.+|++ ..++++.++
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~-------G~---~~~~l~~~~~~~-v~~~g~~~e~~~~l~~~d 72 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIII-------GN---GPDELKRLRRPN-VRFHGFVEELPEILAAAD 72 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEE-------CE---SS-HHCCHHHCT-EEEE-S-HHHHHHHHC-S
T ss_pred cccccccccccccccchhhhHHHHHHHHCcCEEEEEE-------eC---CHHHHHHhcCCC-EEEcCCHHHHHHHHHhCC
Confidence 4455665553 33343333 55556543334444332 22 112232221335 99999997 356888888
Q ss_pred ccceeec--cC-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 372 VGGFLTH--GG-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 372 ~~~~ItH--gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
+....+. .| -+++.|++++|+|+|+.+.. ....+ +..+.|..+ .-+.+++.++|.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--ANDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---TT-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--CCCHHHHHHHHHHHhcC
Confidence 8555442 23 38999999999999997771 22233 225777766 34999999999999874
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.40 E-value=1.5 Score=45.43 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=48.2
Q ss_pred ceeEEeccCH-HHHhccCCccceee---ccCc-hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 354 NRFIVSWAPQ-EEVLAHPAVGGFLT---HGGW-NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 354 nv~~~~~~p~-~~ll~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
||.+.+|... ..+|..+++ ||. .-|. +++.||+++|+|+|+.... -+...+.+ -..|..++ .-+.+.
T Consensus 456 ~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~d-G~nG~LVp-~~D~~a 527 (578)
T PRK15490 456 RILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIE-GVSGFILD-DAQTVN 527 (578)
T ss_pred cEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHccc-CCcEEEEC-CCChhh
Confidence 3999988653 457877777 775 3454 5999999999999987653 34455543 46677775 234445
Q ss_pred HHHHH
Q 011531 429 IEKLV 433 (483)
Q Consensus 429 l~~~i 433 (483)
+.+++
T Consensus 528 La~ai 532 (578)
T PRK15490 528 LDQAC 532 (578)
T ss_pred HHHHH
Confidence 55444
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.34 E-value=0.054 Score=45.21 Aligned_cols=104 Identities=10% Similarity=0.174 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHH
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKD 88 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~ 88 (483)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++.. ......
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~----------~~~i~~~~~~~~--------~k~~~~ 59 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI----------IEGIKVIRLPSP--------RKSPLN 59 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH----------hCCeEEEEecCC--------CCccHH
Confidence 567777665555 55779999999999999999544322221 125777777522 111122
Q ss_pred HHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCc--chHHHHHHcC-CCeEEEec
Q 011531 89 VFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCF--LTLDVSEELQ-IPLLALRT 147 (483)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~--~~~~~A~~lg-IP~v~~~~ 147 (483)
.+. + . .+..++++ .+||+|.+...... .+..++...+ +|.+....
T Consensus 60 ~~~-~----~-~l~k~ik~--------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 60 YIK-Y----F-RLRKIIKK--------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHH-H----H-HHHHHhcc--------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 221 1 1 34555555 67999988876541 1344667788 89887543
No 125
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.27 E-value=0.0078 Score=46.76 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=42.3
Q ss_pred ccccccccCCCCeEEEEecCcccCC---CH--HHHHHHHHHHHhCCCeEEEEEcCC
Q 011531 281 SCMTWLNSQPPKSVLYVSFGSLVGL---TR--EQMSELWHGLVNRGQRFLLVVRPD 331 (483)
Q Consensus 281 ~l~~~l~~~~~~~vi~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 331 (483)
.+-.|+...+.+|.|+||+||.... .. ..+..++++++.++..+|..+...
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 3556998888999999999998863 22 468889999999999999998654
No 126
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.22 E-value=0.85 Score=40.89 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=35.2
Q ss_pred ceeEEeccCH----HHHhccCCccceeeccC----chhHHHHHHhCCceeccccccch
Q 011531 354 NRFIVSWAPQ----EEVLAHPAVGGFLTHGG----WNSTLEGIAAGVPMICWPQFSDQ 403 (483)
Q Consensus 354 nv~~~~~~p~----~~ll~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ 403 (483)
|+.+.++++. ..+++.+++ +|+-.. -+++.||+++|+|+|+.+..+.+
T Consensus 162 ~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 162 RVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 4888888632 234433665 777765 68999999999999998876543
No 127
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.09 E-value=0.077 Score=52.58 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=57.3
Q ss_pred eeEEeccCH-HHHhccCCccceeecc-C-chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHH
Q 011531 355 RFIVSWAPQ-EEVLAHPAVGGFLTHG-G-WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEK 431 (483)
Q Consensus 355 v~~~~~~p~-~~ll~~~~~~~~ItHg-G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ 431 (483)
+.+.++.++ ..++..+++-++.++. | ..++.||+++|+|+|+.....- ....+.+ -..|..+ +.-+.+++++
T Consensus 263 v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~-~~~G~lv-~~~d~~~la~ 337 (372)
T cd04949 263 VFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIED-GENGYLV-PKGDIEALAE 337 (372)
T ss_pred EEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHccc-CCCceEe-CCCcHHHHHH
Confidence 888887764 5688888885555543 3 4589999999999999754321 2334433 4577777 4468999999
Q ss_pred HHHHHHhH
Q 011531 432 LVRDLMEN 439 (483)
Q Consensus 432 ~i~~ll~~ 439 (483)
+|.+++++
T Consensus 338 ~i~~ll~~ 345 (372)
T cd04949 338 AIIELLND 345 (372)
T ss_pred HHHHHHcC
Confidence 99999996
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.93 E-value=0.13 Score=52.53 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=84.4
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhh------hcCCCceeEEeccCH
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNE------GTEERNRFIVSWAPQ 363 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~nv~~~~~~p~ 363 (483)
++..|||.+|--..+.++..++.-.+-++..+--++|.++.+.. |. ..++. -.+++ |.+.+-++.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~---ge-----~rf~ty~~~~Gl~p~r-iifs~va~k 826 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---GE-----QRFRTYAEQLGLEPDR-IIFSPVAAK 826 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc---ch-----HHHHHHHHHhCCCccc-eeeccccch
Confidence 55678999998888899999999888899889899999976532 11 11111 12455 777766652
Q ss_pred -----HHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC
Q 011531 364 -----EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK 421 (483)
Q Consensus 364 -----~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 421 (483)
.-.|.+-.++-+.+. |..|.++.|+.|||||.+|.-.--...|.-..-..|+|..+.
T Consensus 827 ~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred HHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 234544444456665 678999999999999999986554444432223479998664
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.59 E-value=1.1 Score=43.29 Aligned_cols=131 Identities=13% Similarity=0.066 Sum_probs=73.9
Q ss_pred CCeEEEEecCccc---CCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEec--cCH-H
Q 011531 291 PKSVLYVSFGSLV---GLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSW--APQ-E 364 (483)
Q Consensus 291 ~~~vi~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~p~-~ 364 (483)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.+. .........+..+. ..+++- +++ .
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e~~~~~~i~~~~~~--~~l~g~~sL~el~ 249 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------EKQRAERIAEALPG--AVVLPKMSLAEVA 249 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHhhCCC--CeecCCCCHHHHH
Confidence 3555666666533 26778888888888766777776542110 00011122222222 223332 333 5
Q ss_pred HHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhcccee-c---C-CCCCHHHHHHHHHHHH
Q 011531 365 EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFD-M---K-DTCDGSIIEKLVRDLM 437 (483)
Q Consensus 365 ~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l---~-~~~~~~~l~~~i~~ll 437 (483)
.+++++++ +|+. -.|.+.=|.+.|+|+|.+=-..+ ..+.. -+|-... + . ..++++++.+++.++|
T Consensus 250 ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 250 ALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRTG-GYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----Hhhcc-cCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 68877776 9976 67899999999999987621111 11110 0111111 1 1 6789999999998874
No 130
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.26 E-value=0.039 Score=46.81 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHH
Q 011531 23 PMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFR 102 (483)
Q Consensus 23 p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (483)
-+..|+++|.++||+|+++++.......... ..++.+..+|-.-....... .. .+ ..+.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~---~~--------~~~~ 64 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE---------EDGVRVHRLPLPRRPWPLRL-LR---FL--------RRLR 64 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE---------ETTEEEEEE--S-SSSGGGH-CC---HH--------HHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc---------cCCceEEeccCCccchhhhh-HH---HH--------HHHH
Confidence 4678999999999999999974433321111 12477777662111110000 00 11 1223
Q ss_pred HHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHH-HcCCCeEEEe
Q 011531 103 DLLISLREETEQRQSPTCVIADGILCFLTLDVSE-ELQIPLLALR 146 (483)
Q Consensus 103 ~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~-~lgIP~v~~~ 146 (483)
.++.. ++ .+||+|.+..........++. ..++|++...
T Consensus 65 ~~l~~-~~-----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 65 RLLAA-RR-----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHCHH-CT--------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHhh-hc-----cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 33311 21 589999998753221233444 7899999864
No 131
>PRK10125 putative glycosyl transferase; Provisional
Probab=94.58 E-value=5.7 Score=39.94 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCeE-EEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccC-H---HHHhccCCccceeecc---C-
Q 011531 310 MSELWHGLVNRGQRF-LLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAP-Q---EEVLAHPAVGGFLTHG---G- 380 (483)
Q Consensus 310 ~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~---~~ll~~~~~~~~ItHg---G- 380 (483)
+..+++|+...+.++ ++.+ |.... . ...+ +....+.. + ..+++.+++ ||.-. |
T Consensus 258 ~~~li~A~~~l~~~~~L~iv--------G~g~~--~-----~~~~-v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egf 319 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTF--------GKFSP--F-----TAGN-VVNHGFETDKRKLMSALNQMDA--LVFSSRVDNY 319 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEE--------cCCCc--c-----cccc-eEEecCcCCHHHHHHHHHhCCE--EEECCccccC
Confidence 456788887765443 3444 22100 1 1223 66666653 3 345655666 66532 2
Q ss_pred chhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHH
Q 011531 381 WNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDL 436 (483)
Q Consensus 381 ~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~l 436 (483)
-.++.||+++|+|+|.....+ ....+ + .+-|..++ .-+.+.|++.++..
T Consensus 320 p~vilEAmA~G~PVVat~~gG----~~Eiv-~-~~~G~lv~-~~d~~~La~~~~~~ 368 (405)
T PRK10125 320 PLILCEALSIGVPVIATHSDA----AREVL-Q-KSGGKTVS-EEEVLQLAQLSKPE 368 (405)
T ss_pred cCHHHHHHHcCCCEEEeCCCC----hHHhE-e-CCcEEEEC-CCCHHHHHhccCHH
Confidence 358999999999999998865 22234 4 35688774 34778888765433
No 132
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.46 E-value=0.3 Score=37.47 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=52.5
Q ss_pred ccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhc-cceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 011531 378 HGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWK-IGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVATMAR 456 (483)
Q Consensus 378 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~ 456 (483)
+|-...+.|++++|+|+|+-+. ......+ + -| -++.. . +.+++.++|.++++|. +..++.+++-.+.++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~-~~~~~~~~-~--~~~el~~~i~~ll~~~-~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-E-DGEHIITY-N--DPEELAEKIEYLLENP-EERRRIAKNARERVL 78 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-C-CCCeEEEE-C--CHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
Confidence 4556789999999999998766 3333333 2 24 23333 2 9999999999999962 344444555545554
Q ss_pred HHHhcCCChHHHHHHHH
Q 011531 457 DAVNEGGSSYRNLDGLI 473 (483)
Q Consensus 457 ~~~~~gg~~~~~~~~l~ 473 (483)
+ .-+....++.++
T Consensus 79 ~----~~t~~~~~~~il 91 (92)
T PF13524_consen 79 K----RHTWEHRAEQIL 91 (92)
T ss_pred H----hCCHHHHHHHHH
Confidence 4 455555566554
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=94.29 E-value=1.2 Score=43.33 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=55.7
Q ss_pred cCCCceeEE---eccCHH---HHhccCCccceeec---cCc-hhHHHHHHhCCceecccc------ccch------hHHH
Q 011531 350 TEERNRFIV---SWAPQE---EVLAHPAVGGFLTH---GGW-NSTLEGIAAGVPMICWPQ------FSDQ------LVNS 407 (483)
Q Consensus 350 ~~~~nv~~~---~~~p~~---~ll~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~------~~DQ------~~na 407 (483)
.+++ |.+. +++++. .+++.+++ ||.- =|. .++.||+++|+|+|+.-. .+|+ ..++
T Consensus 199 l~~~-V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v 275 (335)
T PHA01633 199 VPAN-VHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKV 275 (335)
T ss_pred CCCc-EEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCH
Confidence 3445 8887 455543 56777777 7753 344 478999999999998643 2332 3333
Q ss_pred HHHHH-hhccceecCCCCCHHHHHHHHHHHHh
Q 011531 408 RCVSE-VWKIGFDMKDTCDGSIIEKLVRDLME 438 (483)
Q Consensus 408 ~~v~~-~~G~G~~l~~~~~~~~l~~~i~~ll~ 438 (483)
.-..+ ..|.|..+ ...++++++++|.++++
T Consensus 276 ~~~~~~~~g~g~~~-~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 276 EEYYDKEHGQKWKI-HKFQIEDMANAIILAFE 306 (335)
T ss_pred HHhcCcccCceeee-cCCCHHHHHHHHHHHHh
Confidence 32222 13556565 56899999999999966
No 134
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.24 E-value=0.19 Score=44.68 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDL 49 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~ 49 (483)
|||++..=-+. +---+..|+++|.+.||+|+++++.....-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 67777766554 455688899999888999999999766443
No 135
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.57 Score=47.66 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhh------cCCCceeEEeccCH
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEG------TEERNRFIVSWAPQ 363 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~nv~~~~~~p~ 363 (483)
++..+||+||+...+..++.+..=+.-++..+--++|..... ........+++. .+++ .++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~------~~~~~~~~l~~la~~~Gv~~eR-L~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG------DDAEINARLRDLAEREGVDSER-LRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC------CcHHHHHHHHHHHHHcCCChhh-eeecCCCCC
Confidence 567899999999999999998877777777787889988531 111222222221 1234 677766663
Q ss_pred ---HHHhccCCcccee---eccCchhHHHHHHhCCceeccccccchhH--HHHHHHHhhccceec
Q 011531 364 ---EEVLAHPAVGGFL---THGGWNSTLEGIAAGVPMICWPQFSDQLV--NSRCVSEVWKIGFDM 420 (483)
Q Consensus 364 ---~~ll~~~~~~~~I---tHgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l 420 (483)
.+=++-+++ |+ --||..|..|+|..|||+|..+ ++|+. |+.-+...+|+-..+
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 344444554 66 4799999999999999999876 55553 333333334554444
No 136
>PRK14098 glycogen synthase; Provisional
Probab=93.42 E-value=1.7 Score=44.93 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=54.2
Q ss_pred cCCCceeEEeccCHH---HHhccCCccceeecc---Cc-hhHHHHHHhCCceecccccc--chhHHHHHHHHhhccceec
Q 011531 350 TEERNRFIVSWAPQE---EVLAHPAVGGFLTHG---GW-NSTLEGIAAGVPMICWPQFS--DQLVNSRCVSEVWKIGFDM 420 (483)
Q Consensus 350 ~~~~nv~~~~~~p~~---~ll~~~~~~~~ItHg---G~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l 420 (483)
.+++ |.+..+++.. .+++.+++ ++.-. |. .+.+||+++|+|.|+....+ |.-.. .. +.-+.|..+
T Consensus 360 ~~~~-V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~ 433 (489)
T PRK14098 360 HPEQ-VSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIF 433 (489)
T ss_pred CCCC-EEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEe
Confidence 3455 9998888864 57877777 66432 33 27789999999888876533 21110 11 113567666
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 011531 421 KDTCDGSIIEKLVRDLME 438 (483)
Q Consensus 421 ~~~~~~~~l~~~i~~ll~ 438 (483)
...+.+.+.++|.++++
T Consensus 434 -~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 434 -HDYTPEALVAKLGEALA 450 (489)
T ss_pred -CCCCHHHHHHHHHHHHH
Confidence 45679999999999874
No 137
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.16 E-value=3.6 Score=39.64 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=41.7
Q ss_pred CHHHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHH---HHHHHhhccceecC
Q 011531 362 PQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNS---RCVSEVWKIGFDMK 421 (483)
Q Consensus 362 p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na---~~v~~~~G~G~~l~ 421 (483)
|+..+|+.++. .+||---.+=+.||+..|+|+.++|.-.-..... +.+.+ .|+-..++
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHH-CCCEEECC
Confidence 68888988886 6777777899999999999999999876212222 23433 46665555
No 138
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.78 E-value=0.99 Score=46.11 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=69.9
Q ss_pred EeccCHHH---HhccCCccceee---ccCch-hHHHHHHhCCc----eeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 358 VSWAPQEE---VLAHPAVGGFLT---HGGWN-STLEGIAAGVP----MICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 358 ~~~~p~~~---ll~~~~~~~~It---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
...+++.+ ++..+++ ++. +=|+| ++.||+++|+| +|+--+.+-.. .+ +-|..+ ...+.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~----~l----~~gllV-nP~d~ 409 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ----EL----NGALLV-NPYDI 409 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH----Hh----CCcEEE-CCCCH
Confidence 35566654 5666776 664 44654 78899999999 66666554322 12 335555 45689
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011531 427 SIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIR 477 (483)
Q Consensus 427 ~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~ 477 (483)
++++++|.++|+...++-+++.+++.+.+.. -+...-++.++++|.
T Consensus 410 ~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 410 DGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 9999999999983225566677777777654 355666888887764
No 139
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.85 E-value=2.4 Score=36.70 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=26.5
Q ss_pred CCccEEEEcCCCCcchHHHHHHc-CCCeEEEecc
Q 011531 116 QSPTCVIADGILCFLTLDVSEEL-QIPLLALRTH 148 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~l-gIP~v~~~~~ 148 (483)
..||+||..+..-. +..+-+.+ ++|.+...-.
T Consensus 65 f~PDvI~~H~GWGe-~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 65 FVPDVIIAHPGWGE-TLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCEEEEcCCcch-hhhHHHhCCCCcEEEEEEE
Confidence 88999999987656 78888888 9999987543
No 140
>PHA01630 putative group 1 glycosyl transferase
Probab=91.68 E-value=5.5 Score=38.80 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=45.8
Q ss_pred eccCHHH---HhccCCcccee--ec-cC-chhHHHHHHhCCceecccccc--chh---HHHHHHHHh-----------hc
Q 011531 359 SWAPQEE---VLAHPAVGGFL--TH-GG-WNSTLEGIAAGVPMICWPQFS--DQL---VNSRCVSEV-----------WK 415 (483)
Q Consensus 359 ~~~p~~~---ll~~~~~~~~I--tH-gG-~gs~~eal~~GvP~l~~P~~~--DQ~---~na~~v~~~-----------~G 415 (483)
.++|+.+ +++.+++ +| ++ .| -.++.||+++|+|+|+....+ |.- .|+-.+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466544 6877777 55 33 33 358999999999999987543 321 111111 10 13
Q ss_pred cceecCCCCCHHHHHHHHHHHHhH
Q 011531 416 IGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 416 ~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
+|..++ .+.+++.+++.++|.+
T Consensus 273 ~G~~v~--~~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 273 VGYFLD--PDIEDAYQKLLEALAN 294 (331)
T ss_pred cccccC--CCHHHHHHHHHHHHhC
Confidence 455443 3678888888888874
No 141
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.97 E-value=3 Score=35.65 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 17 LQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 17 ~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
..|=-.-+..|+++|+++||+|+++++.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4466677899999999999999999874
No 142
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.75 E-value=1.8 Score=36.77 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+-.|||++...|+-|-..-.+.|++.|.++|++|-=+-++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 457999999999999999999999999999999986666554
No 143
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.38 E-value=6.9 Score=36.39 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
.++|||++..=-+. |---+.+|+++|.+.| +|+++++.....
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 46799988765433 2245788899999888 799999866543
No 144
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.37 E-value=22 Score=34.62 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=68.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeC-CCCCCCCcccCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSI-PSGLPANVIRSGL 84 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~-p~~l~~~~~~~~~ 84 (483)
|||+++-....|++.-.+++-..|+++ +.++++++.+....-+... |.++-+.. .. . ..+
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~----------p~I~~vi~~~~---~----~~~ 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN----------PEIDKVIIIDK---K----KKG 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC----------hHhhhhccccc---c----ccc
Confidence 789999999999999999999999998 5999999995443333221 12221111 10 0 000
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
.....+..+...+++ .++|+||.=....= ...++...++|.-.-
T Consensus 65 -----------~~~~~~~~l~~~lr~-----~~yD~vidl~~~~k-sa~l~~~~~~~~r~g 108 (334)
T COG0859 65 -----------LGLKERLALLRTLRK-----ERYDAVIDLQGLLK-SALLALLLGIPFRIG 108 (334)
T ss_pred -----------cchHHHHHHHHHhhc-----cCCCEEEECcccHH-HHHHHHHhCCCcccc
Confidence 011224455666654 57999998876665 777777888886663
No 145
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.22 E-value=1 Score=37.57 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
|+.++++.+.++-+|-.-..-++..|.++|++|++++.....+.+.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 678999999999999999999999999999999999986555555443
No 146
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.85 E-value=5.8 Score=38.29 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=33.7
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+||+|++. |+-|-..-..++|-.|++.|++|.++++++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 57777777 8889999999999999999999999987654
No 147
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.75 E-value=2.1 Score=43.90 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=61.9
Q ss_pred EEeccCHHH---HhccCCccceee---ccCch-hHHHHHHhCCc----eeccccccchhHHHHHHHHhhccceecCCCCC
Q 011531 357 IVSWAPQEE---VLAHPAVGGFLT---HGGWN-STLEGIAAGVP----MICWPQFSDQLVNSRCVSEVWKIGFDMKDTCD 425 (483)
Q Consensus 357 ~~~~~p~~~---ll~~~~~~~~It---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 425 (483)
+.+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|+.-+.+-.. + ..-|..+ ...+
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~-------~-~~~g~lv-~p~d 413 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAE-------E-LSGALLV-NPYD 413 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchh-------h-cCCCEEE-CCCC
Confidence 346777655 5767776 663 44654 77999999999 54443322111 1 1234555 4568
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011531 426 GSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 426 ~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l 476 (483)
.++++++|.++|++..++-++..++.++.+.. -+...-++.++.+|
T Consensus 414 ~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 414 IDEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 99999999999984223334444444444433 24455567776665
No 148
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.28 E-value=2.1 Score=41.10 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=32.8
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 8 PHVVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 8 ~~il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
||++|+.. |+-|-..-..++|-.++++|++|.++++++.+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 46666666 78899999999999999999999999997654
No 149
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=86.94 E-value=13 Score=34.61 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
|||++..=-+. |---+.+|+++|++ +|+|+++++.....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46666654332 22237888999975 68999999876543
No 150
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=86.55 E-value=7.3 Score=33.82 Aligned_cols=113 Identities=15% Similarity=0.216 Sum_probs=58.3
Q ss_pred EcCCCCCCHHHHHHHHHHH-Hh-CCcEEEEEeCCCchhh--h---hhccccccccCCCCCeEEEeCCCCCCCCcccCCCC
Q 011531 13 LPYPLQGHIKPMMSLAELL-GS-ANFQVTFVNTDHNHDL--L---LRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLT 85 (483)
Q Consensus 13 ~~~~~~GH~~p~l~La~~L-~~-rGH~V~~~~~~~~~~~--~---~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~ 85 (483)
+..++.||+.=|+.|.+.+ .+ ..++..+++....... + ++... ...++..+|....... ..
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--------~~~~~~~~~r~r~v~q----~~ 70 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--------KRHKILEIPRAREVGQ----SY 70 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--------ccceeeccceEEEech----hh
Confidence 3456779999999999999 33 3566666765433222 1 12111 0113444553221111 00
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcc-hHHHHHHc------CCCeEEEec
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFL-TLDVSEEL------QIPLLALRT 147 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~-~~~~A~~l------gIP~v~~~~ 147 (483)
....+..+.. +...+.-+ ++ .+||+||+.....+. ...+|..+ |.+.|.+-+
T Consensus 71 ~~~~~~~l~~-~~~~~~il---~r------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 71 LTSIFTTLRA-FLQSLRIL---RR------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HhhHHHHHHH-HHHHHHHH---HH------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1111222211 11111111 22 589999999886642 34467778 899988744
No 151
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=86.50 E-value=7.1 Score=38.31 Aligned_cols=103 Identities=19% Similarity=0.100 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeEE-EeCCCCCCCCcccCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQF-RSIPSGLPANVIRSGL 84 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f-~~~p~~l~~~~~~~~~ 84 (483)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+-+... |.++- +.++.. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------P~vd~vi~~~~~--~------- 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----------PEVNEAIPMPLG--H------- 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----------CccCEEEecccc--c-------
Confidence 589999999999999999999999996 8999999986554444322 23443 223311 0
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
....+ ....+++..+++ .++|+||.=....- ...++...|+|.-.
T Consensus 62 ~~~~~---------~~~~~l~~~lr~-----~~yD~vidl~~~~~-s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 GALEI---------GERRRLGHSLRE-----KRYDRAYVLPNSFK-SALVPFFAGIPHRT 106 (348)
T ss_pred chhhh---------HHHHHHHHHHHh-----cCCCEEEECCCcHH-HHHHHHHcCCCeEe
Confidence 00000 112344555554 68999998765555 67777888888655
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=85.99 E-value=8.4 Score=35.52 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
|||++..=-+ =|---+.+|++.|+ .+++|++++++.+..-.
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4555544322 24445778889998 99999999997765444
No 153
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=85.95 E-value=9.1 Score=34.25 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
++.|+++.+.++-.|-....-++..|.++|++|++++.....+.+.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 367999999999999999999999999999999998875555555443
No 154
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.30 E-value=17 Score=36.97 Aligned_cols=91 Identities=8% Similarity=0.068 Sum_probs=63.8
Q ss_pred eeEE-eccC--HHHHhccCCccceeeccCc--hhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHH
Q 011531 355 RFIV-SWAP--QEEVLAHPAVGGFLTHGGW--NSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSII 429 (483)
Q Consensus 355 v~~~-~~~p--~~~ll~~~~~~~~ItHgG~--gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 429 (483)
+.+. .+.+ -.+++..+++-+-|+||.- .++.||+.+|+|++..-...... ..+ .. |... ..-+.+++
T Consensus 330 vvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~-~~~~~~~m 401 (438)
T TIGR02919 330 VKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIF-EHNEVDQL 401 (438)
T ss_pred cEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Ccee-cCCCHHHH
Confidence 6555 6677 3679999999899999774 79999999999999877553322 122 11 4444 34568999
Q ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHHH
Q 011531 430 EKLVRDLMENKRE-EIMGSTDRVATMA 455 (483)
Q Consensus 430 ~~~i~~ll~~~~~-~~~~~a~~l~~~~ 455 (483)
.++|.++|.+ + .++++..+=++..
T Consensus 402 ~~~i~~lL~d--~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 402 ISKLKDLLND--PNQFRELLEQQREHA 426 (438)
T ss_pred HHHHHHHhcC--HHHHHHHHHHHHHHh
Confidence 9999999996 4 5555555444443
No 155
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.28 E-value=4.9 Score=44.19 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=67.9
Q ss_pred ccCH---HHHhccCCccceee---ccCch-hHHHHHHhCCc---eeccccccchhHHHHHHHHhhc-cceecCCCCCHHH
Q 011531 360 WAPQ---EEVLAHPAVGGFLT---HGGWN-STLEGIAAGVP---MICWPQFSDQLVNSRCVSEVWK-IGFDMKDTCDGSI 428 (483)
Q Consensus 360 ~~p~---~~ll~~~~~~~~It---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~ 428 (483)
++|. ..++..+++ |+. .-|+| ++.|++++|+| ++++.-++- .+.. +| -|+.+ ...+.++
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~~----l~~~allV-nP~D~~~ 432 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQS----LGAGALLV-NPWNITE 432 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chhh----hcCCeEEE-CCCCHHH
Confidence 4554 356767777 664 44776 77799999999 444443221 1111 33 45666 5579999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 429 IEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 429 l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
++++|.++|+...++-+++.+++.+.++.. ....-++.++++|....
T Consensus 433 lA~AI~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 433 VSSAIKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHHh
Confidence 999999999921144455566666666552 45666888888887665
No 156
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=84.28 E-value=1.9 Score=34.86 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
|+++.+.++-.|.....-++..|.++|++|+++......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 58999999999999999999999999999998876544444433
No 157
>PLN02939 transferase, transferring glycosyl groups
Probab=84.16 E-value=28 Score=38.67 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=53.3
Q ss_pred ceeEEeccCHH---HHhccCCccceeec---cCc-hhHHHHHHhCCceecccccc--chhHH--HHHHHHhhccceecCC
Q 011531 354 NRFIVSWAPQE---EVLAHPAVGGFLTH---GGW-NSTLEGIAAGVPMICWPQFS--DQLVN--SRCVSEVWKIGFDMKD 422 (483)
Q Consensus 354 nv~~~~~~p~~---~ll~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~~~~G~G~~l~~ 422 (483)
+|.+..+.+.. .+++.+++ ||.- =|. .+.+||+++|+|.|+....+ |.-.+ ...+.+.-+-|..+ .
T Consensus 838 rV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf-~ 914 (977)
T PLN02939 838 NIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF-L 914 (977)
T ss_pred eEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe-c
Confidence 38888888864 58877777 7753 222 48999999999999876644 22111 11111112456666 3
Q ss_pred CCCHHHHHHHHHHHHh
Q 011531 423 TCDGSIIEKLVRDLME 438 (483)
Q Consensus 423 ~~~~~~l~~~i~~ll~ 438 (483)
..+++.+.++|.+++.
T Consensus 915 ~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 TPDEQGLNSALERAFN 930 (977)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4588999999998875
No 158
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.14 E-value=9.6 Score=37.45 Aligned_cols=107 Identities=10% Similarity=0.107 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeE-EEeCCCCCCCCcccC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQ-FRSIPSGLPANVIRS 82 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-f~~~p~~l~~~~~~~ 82 (483)
..+||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+-+.. .|.++ ++.++..
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~----------~P~id~vi~~~~~-------- 65 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE----------NPEINALYGIKNK-------- 65 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc----------CCCceEEEEeccc--------
Confidence 46889999999999999999999999998 899999999765544422 22343 3334321
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 83 GLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
.......+ ..+..++.++++ .++|++|.-....- ...++...|.|..+
T Consensus 66 ~~~~~~~~--------~~~~~l~~~lr~-----~~yD~vidl~~~~~-s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 KAGASEKI--------KNFFSLIKVLRA-----NKYDLIVNLTDQWM-VALLVRLLNARVKI 113 (352)
T ss_pred cccHHHHH--------HHHHHHHHHHhh-----CCCCEEEEcccchH-HHHHHHHhCCCeEE
Confidence 00000000 112344555554 68999997654444 56677777888755
No 159
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.53 E-value=6.2 Score=36.78 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
|||+++..-+ . -..|++.|.++||+|+..+....
T Consensus 1 m~ILvlGGT~----e-gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMGGTV----D-SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEEechH----H-HHHHHHHHHhCCCeEEEEEccCC
Confidence 4666654333 2 67899999999999998776543
No 160
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.66 E-value=4.6 Score=37.99 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=63.7
Q ss_pred EeccCHHHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHH--HHHHHHhhccceecCCCCCHHHHHHHHHH
Q 011531 358 VSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVN--SRCVSEVWKIGFDMKDTCDGSIIEKLVRD 435 (483)
Q Consensus 358 ~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~n--a~~v~~~~G~G~~l~~~~~~~~l~~~i~~ 435 (483)
+.|-.+.++|.++++ .|--.|. .+-+++-.|+|+|.+|-.+-|+.- |.+=..-+|+.+.+- .-.+..-..+.++
T Consensus 300 lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv-~~~aq~a~~~~q~ 375 (412)
T COG4370 300 LSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV-RPEAQAAAQAVQE 375 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec-CCchhhHHHHHHH
Confidence 356666677766665 4433332 234467789999999999998754 444433356666653 1222233334444
Q ss_pred HHhHhHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 436 LMENKREEIMGSTD-RVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 436 ll~~~~~~~~~~a~-~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
+|.| +.+..+++ .=.+++.++ -++..+.|.|.+++
T Consensus 376 ll~d--p~r~~air~nGqrRiGqa--------Gaa~rIAe~l~e~a 411 (412)
T COG4370 376 LLGD--PQRLTAIRHNGQRRIGQA--------GAARRIAEELGEMA 411 (412)
T ss_pred HhcC--hHHHHHHHhcchhhccCc--------chHHHHHHHHHHhc
Confidence 8888 77766666 333444332 26666777776654
No 161
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.51 E-value=25 Score=29.73 Aligned_cols=138 Identities=15% Similarity=0.088 Sum_probs=70.8
Q ss_pred EEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccc
Q 011531 295 LYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGG 374 (483)
Q Consensus 295 i~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 374 (483)
|.|-+||.. +....+++...|+..|..+-..+- +....|+.+.+-.. -+.+-.+++
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~--------saHR~p~~l~~~~~--------------~~~~~~~~v 58 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVA--------SAHRTPERLLEFVK--------------EYEARGADV 58 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE----------TTTSHHHHHHHHH--------------HTTTTTESE
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEE--------eccCCHHHHHHHHH--------------HhccCCCEE
Confidence 556667665 667778889999988876544331 22233343332110 011123344
Q ss_pred eeeccCch----hHHHHHHhCCceeccccccchhH----HHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHH
Q 011531 375 FLTHGGWN----STLEGIAAGVPMICWPQFSDQLV----NSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMG 446 (483)
Q Consensus 375 ~ItHgG~g----s~~eal~~GvP~l~~P~~~DQ~~----na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~ 446 (483)
||.=.|.. ++.-++. -+|+|.+|....+.. ....++--.|+++..-.-=+...-+-.-.++|.-..+++++
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~ 137 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELRE 137 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHH
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHH
Confidence 88877754 3333333 679999998766432 22334222356554211003344444444555511188899
Q ss_pred HHHHHHHHHHH
Q 011531 447 STDRVATMARD 457 (483)
Q Consensus 447 ~a~~l~~~~~~ 457 (483)
+.+..++.+++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99888888765
No 162
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.47 E-value=4.9 Score=39.94 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhh
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDL 49 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~ 49 (483)
+++..|+++..-+.|-..-.-.||+.|.++|++|.+++.+-+...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 445678888888999999999999999999999999998766543
No 163
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=82.46 E-value=13 Score=34.62 Aligned_cols=43 Identities=19% Similarity=0.063 Sum_probs=34.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
+++..-|+-|...-...+|..++++|++|.++..+.. ..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 3445558889999999999999999999999998654 344443
No 164
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=82.32 E-value=14 Score=33.85 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=24.1
Q ss_pred CCccEEEEcCCCC-cchHHHHHHcCCCeEEEecchh
Q 011531 116 QSPTCVIADGILC-FLTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 116 ~~~D~VI~D~~~~-~~~~~~A~~lgIP~v~~~~~~~ 150 (483)
.-||++++..... -.|..=|.++|||+|.++-+.+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3499876654433 2266678899999999876543
No 165
>PRK14099 glycogen synthase; Provisional
Probab=81.36 E-value=20 Score=37.06 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=30.0
Q ss_pred CCCEEEEEcCC------CCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 6 VNPHVVLLPYP------LQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 6 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
++|||++++.- +.|=-.-.-+|.++|+++||+|.++++
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P 45 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVP 45 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 56999998642 334445577889999999999999998
No 166
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=80.89 E-value=21 Score=33.82 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
.+..|.+...|+-|--.-.-.|.++|.++||+|-+++-++.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 34578888899999999999999999999999999986554
No 167
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=80.82 E-value=28 Score=31.01 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=30.2
Q ss_pred CEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+|++.++. ++-|-..-...||..|+++|++|.++-.+..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 55544443 5778888899999999999999999866543
No 168
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.65 E-value=7 Score=37.49 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
.--|+|+..-+.|-..-.-.||..|.+.|++|.++..+-++....+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQ 185 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQ 185 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHH
Confidence 44567888889999999999999999999999999998876654443
No 169
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.83 E-value=25 Score=33.13 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCC--cEEEEEeCCCchhhhhhccccccccCCCCCeE-EEeCCCCCCCCcccCCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSAN--FQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQ-FRSIPSGLPANVIRSGLT 85 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rG--H~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-f~~~p~~l~~~~~~~~~~ 85 (483)
||+++-..+.|++.-+.++.++|+++. -+|++++.+...+-+... |.++ +..++... ....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~----------p~id~v~~~~~~~------~~~~ 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM----------PEVDRVIVLPKKH------GKLG 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC----------CccCEEEEcCCcc------cccc
Confidence 688999999999999999999999984 899999996554433322 2333 33333211 0011
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
. ..+.+++..+++ .++|+++.-..... ...++...+++...
T Consensus 65 ~------------~~~~~~~~~l~~-----~~~D~vi~~~~~~~-~~~~~~~~~~~~~~ 105 (279)
T cd03789 65 L------------GARRRLARALRR-----RRYDLAIDLQGSLR-SALLPFLAGAPRRI 105 (279)
T ss_pred h------------HHHHHHHHHHhh-----cCCCEEEECCCccH-HHHHHHHhCCCeEE
Confidence 1 113345555554 58999998877665 56677777777654
No 170
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=78.43 E-value=3.5 Score=33.38 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCC---CHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 8 PHVVLLPYPLQG---HIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 8 ~~il~~~~~~~G---H~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|||+|+.-|-.+ .-.-..+++.+-.+|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 678888776544 33467899999999999999998743
No 171
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=78.27 E-value=23 Score=34.60 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeE-EEeCCCCCCCCcccCCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQ-FRSIPSGLPANVIRSGLT 85 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-f~~~p~~l~~~~~~~~~~ 85 (483)
||+++-....|++.-..++.+.|+++ +.+|++++.+.+..-+... |.++ ++.++..... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------p~vd~vi~~~~~~~~------~~ 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----------PDINALYGLDRKKAK------AG 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----------CCccEEEEeChhhhc------ch
Confidence 68999999999999999999999997 8999999996654444322 2343 3444421100 00
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
.. .+. .+..++..+++ .++|++|.-....- ...++...|.|.-+
T Consensus 65 ~~----~~~-----~~~~l~~~lr~-----~~yD~vidl~~~~~-s~ll~~l~~a~~ri 108 (344)
T TIGR02201 65 ER----KLA-----NQFHLIKVLRA-----NRYDLVVNLTDQWM-VAILVKLLNARVKI 108 (344)
T ss_pred HH----HHH-----HHHHHHHHHHh-----CCCCEEEECCcchH-HHHHHHhcCCCeEE
Confidence 00 011 11234455554 68999997755555 77888888999655
No 172
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=78.20 E-value=11 Score=33.42 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHH
Q 011531 22 KPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAF 101 (483)
Q Consensus 22 ~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (483)
.-...+...+.++|-+|.++++......+.+.... ..+...+.-.=++..++.. .........+...-...+
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~---~~~~~~i~~rw~~G~LTN~-----~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAE---RTGSFYVNGRWLGGTLTNW-----KTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH---HcCCeeecCeecCCcCCCH-----HHHHHHHHHHHHHHHHHH
Confidence 33445557777889999999997666555443321 0110011111122222211 111111111111111222
Q ss_pred HHHHHHhhhhhcCCCCccEEEEcCCCC--cchHHHHHHcCCCeEEEecch
Q 011531 102 RDLLISLREETEQRQSPTCVIADGILC--FLTLDVSEELQIPLLALRTHN 149 (483)
Q Consensus 102 ~~ll~~~~~~~~~~~~~D~VI~D~~~~--~~~~~~A~~lgIP~v~~~~~~ 149 (483)
+..+..++. ....||+||+-...- . +..=|.++|||++.+.-+.
T Consensus 115 ~k~~~g~~~---~~~~Pdlviv~~~~~~~~-ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 115 EKNLGGIKD---MFRLPDLVIVLDPRKEHQ-AIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHhcccccc---cccCCCEEEEeCCccchH-HHHHHHHcCCCEEEEecCC
Confidence 222222211 114799988776433 4 5667888999999986543
No 173
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=77.67 E-value=15 Score=33.13 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=30.9
Q ss_pred EEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 9 HVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 9 ~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
++.+++. |+-|-..-...|+-.|+++|++|.++-.+-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 4555555 578999999999999999999999998764
No 174
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=77.61 E-value=61 Score=30.15 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCeEEEEecCcccC--CCHHHH----HHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhh----hcCCCceeE--
Q 011531 290 PPKSVLYVSFGSLVG--LTREQM----SELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNE----GTEERNRFI-- 357 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~--~~~~~~----~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~nv~~-- 357 (483)
+...|.++-.|+... ..++.. ..+...+++.|..++.+.... .|+.... +.....+.+
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR----------Tp~~~~s~l~~~l~s~~~i~w~ 229 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR----------TPDTVKSILKNNLNSSPGIVWN 229 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC----------CcHHHHHHHHhccccCceeEeC
Confidence 444455555565554 333332 235556677788888776432 2222221 111110222
Q ss_pred ---EeccCHHHHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 358 ---VSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 358 ---~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
+++=|+.+.|+.++- .++|--..+-+.||.+.|+|+.++
T Consensus 230 ~~d~g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 230 NEDTGYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCCCCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 245599999976665 344555678899999999999543
No 175
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=76.97 E-value=16 Score=35.43 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeE-EEeCCCCCCCCcccCCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQ-FRSIPSGLPANVIRSGLT 85 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-f~~~p~~l~~~~~~~~~~ 85 (483)
||+++-..+.|++.-..++.+.|++. +.+|++++.+.+..-+... |.++ +..++.. .. .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------p~id~v~~~~~~--~~----~-- 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----------PEIRQAIDMPLG--HG----A-- 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----------chhceeeecCCc--cc----c--
Confidence 68999999999999999999999997 8999999986543333222 2333 2223311 00 0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
..+ ....+++..+++ .++|++|.-....- ...++...|+|.-.
T Consensus 63 -~~~---------~~~~~~~~~lr~-----~~yD~vi~l~~~~~-s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 -LEL---------TERRRLGRSLRE-----ERYDQAIVLPNSLK-SALIPFFAGIPHRT 105 (334)
T ss_pred -hhh---------hHHHHHHHHHhh-----cCCCEEEECCCCHH-HHHHHHHcCCCcee
Confidence 000 112244455553 68999999866655 66777788888543
No 176
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=76.74 E-value=41 Score=31.23 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
|||++..=-+. |---+.+|+++|.+. |+|+++.+.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 45666554332 334478899999998 7999999966543
No 177
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=76.69 E-value=67 Score=30.14 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=51.0
Q ss_pred ceeEEeccC---HHHHhccCCccceeec---cCch-hHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCH
Q 011531 354 NRFIVSWAP---QEEVLAHPAVGGFLTH---GGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDG 426 (483)
Q Consensus 354 nv~~~~~~p---~~~ll~~~~~~~~ItH---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 426 (483)
++.+..+++ ...+++.+++ ++.- .|.| ++.||+++|+|+|..... .....+ ...+.|. +....+.
T Consensus 258 ~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~~~~~~ 329 (381)
T COG0438 258 NVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LVPPGDV 329 (381)
T ss_pred cEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ecCCCCH
Confidence 488889988 3446665655 5555 3554 459999999999665543 233334 2222366 3322278
Q ss_pred HHHHHHHHHHHhH
Q 011531 427 SIIEKLVRDLMEN 439 (483)
Q Consensus 427 ~~l~~~i~~ll~~ 439 (483)
+.+.+++..++++
T Consensus 330 ~~~~~~i~~~~~~ 342 (381)
T COG0438 330 EELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999987
No 178
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=76.66 E-value=14 Score=35.81 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=37.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~ 48 (483)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 689999999999999999999999997 99999999865433
No 179
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.62 E-value=36 Score=30.14 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLT 85 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~ 85 (483)
++-.|.+++..+.|-..-.+.+|-+.+.+|++|.++-.=.-...-.+. ..+...+++.+.....++.... ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~----~~l~~l~~v~~~~~g~~~~~~~----~~ 92 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGER----NLLEFGGGVEFHVMGTGFTWET----QD 92 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHH----HHHhcCCCcEEEECCCCCcccC----CC
Confidence 456889999999999999999999999999999988531110000000 1112224688888776443221 11
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC
Q 011531 86 AKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC 128 (483)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~ 128 (483)
....... ....+....+.+.. .++|+||.|....
T Consensus 93 ~~e~~~~----~~~~~~~a~~~l~~-----~~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERDIAA----AREGWEEAKRMLAD-----ESYDLVVLDELTY 126 (191)
T ss_pred cHHHHHH----HHHHHHHHHHHHhC-----CCCCEEEEehhhH
Confidence 1111111 11222222222221 6899999997755
No 180
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=76.39 E-value=46 Score=31.16 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
|||++..=-+. |---+.+|++.|...| +|+++.+.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 45666554333 3355788999999887 799999866543
No 181
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=76.31 E-value=22 Score=32.88 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=59.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHH
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAK 87 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~ 87 (483)
|||++..=-+ =|---+.+|+++|++.| +|+++.+.....-...+ +....-+++..++..-........+...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~a------it~~~pl~~~~~~~~~~~~~~~v~GTPa 72 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHS------LTLFEPLRVGQVKVKNGAHIYAVDGTPT 72 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccC------cCCCCCeEEEEeccCCCccEEEEcCcHH
Confidence 4555544322 12334778899999998 89999987654333222 1222235555544100001111122222
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcC-------------CCCcchHHHHHHcCCCeEEEec
Q 011531 88 DVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADG-------------ILCFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~-------------~~~~~~~~~A~~lgIP~v~~~~ 147 (483)
.....- +..++. .+||+||+-. .+.+ |+.-|..+|||.+.+|.
T Consensus 73 Dcv~~g-------l~~l~~---------~~pDLVvSGiN~G~N~g~~v~ySGTVg-AA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 73 DCVILG-------INELMP---------EVPDLVISGINAGENLGTDVTYSGTVG-AAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHHH-------HHHhcc---------CCCCeEEeccccCCCCCccEecchhHH-HHHHHHHcCCCeEEEEe
Confidence 221111 112221 3689988642 1234 56667778999999865
No 182
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=76.02 E-value=33 Score=31.84 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
|||++..=-+. |---+.+|+++|++ +|+|+++++.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46666654333 23347788888865 68999999976543
No 183
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=75.92 E-value=4 Score=33.58 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
+||++...|+.+=.. ...+.++|.++|++|.++.++...+
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~ 40 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAER 40 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHH
Confidence 588888888866666 9999999999999999999954433
No 184
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.79 E-value=37 Score=30.41 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHH
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDV 89 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~ 89 (483)
|.+..+|+.|-......||++|.+++|+|..++.+.. .- + ..++.+ ....+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~-~~----------------i---~~DEsl--------pi~ke~ 55 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL-RG----------------I---LWDESL--------PILKEV 55 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh-hh----------------e---eccccc--------chHHHH
Confidence 4566679999999999999999999999987776321 00 0 111111 111222
Q ss_pred HHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcc-----hHHHHHHcCCCeEEEecchhH
Q 011531 90 FDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFL-----TLDVSEELQIPLLALRTHNAS 151 (483)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~-----~~~~A~~lgIP~v~~~~~~~~ 151 (483)
+. ..+.+....++.+.. +--+||+|...+.- ....|..+..+++++..-.+.
T Consensus 56 yr---es~~ks~~rlldSal-------kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~pl 112 (261)
T COG4088 56 YR---ESFLKSVERLLDSAL-------KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPL 112 (261)
T ss_pred HH---HHHHHHHHHHHHHHh-------cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCH
Confidence 22 212222222444432 35699999887631 234677889999888664443
No 185
>PRK10867 signal recognition particle protein; Provisional
Probab=75.69 E-value=13 Score=37.67 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhC-CcEEEEEeCCCchhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSA-NFQVTFVNTDHNHDL 49 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~V~~~~~~~~~~~ 49 (483)
+.-|+++..++-|-..-...||..|+++ |++|.+++.+.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 3456677778899999999999999999 999999999866543
No 186
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=75.41 E-value=14 Score=37.14 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
+.-|+++..++-|-..-...||..|+++|++|.+++.+.+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 345677777899999999999999999999999999987653
No 187
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=75.28 E-value=31 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4667788899999999999999999999999953
No 188
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.75 E-value=39 Score=30.83 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhhhhcCCCCccEEEEcCCCCc--chHHHHHHcCCCeEEE
Q 011531 98 KPAFRDLLISLREETEQRQSPTCVIADGILCF--LTLDVSEELQIPLLAL 145 (483)
Q Consensus 98 ~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~--~~~~~A~~lgIP~v~~ 145 (483)
...++.+++.++ +-++.+.|..+++ .+..+|...|||++.=
T Consensus 137 ~~aM~~~m~~Lk-------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 137 EDAMEKLMEALK-------ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHHH-------HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 456788888886 4799999998874 1456788999999873
No 189
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=74.55 E-value=69 Score=29.26 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=32.1
Q ss_pred EEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 11 VLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 11 l~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
.|+.. |+-|-..-.+.||.+|+++|-.|+++=.+++..
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34433 888999999999999999999999999877643
No 190
>PRK11519 tyrosine kinase; Provisional
Probab=73.98 E-value=83 Score=34.40 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=67.9
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhcccc------ccccCC------------CCCe
Q 011531 7 NPHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDI------TSFCNR------------FPNF 66 (483)
Q Consensus 7 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~------~~~~~~------------~~~v 66 (483)
+.|+++++. |+-|-..-...||..|+..|++|.++-.+.....+....+. .+.+.+ .+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 445555554 67888888999999999999999999764332222222111 000000 1122
Q ss_pred EEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC----cchHHHHHHcCCCe
Q 011531 67 QFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC----FLTLDVSEELQIPL 142 (483)
Q Consensus 67 ~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~----~~~~~~A~~lgIP~ 142 (483)
.+.+.. . ...+..+.+ ....+.++++.++ .++|+||.|.-.. . +..++...+...
T Consensus 605 ~~lp~g------~--~~~~~~ell------~s~~~~~ll~~l~------~~yD~ViiDtpP~~~v~D-a~~l~~~~d~~l 663 (719)
T PRK11519 605 DLIPRG------Q--VPPNPSELL------MSERFAELVNWAS------KNYDLVLIDTPPILAVTD-AAIVGRHVGTTL 663 (719)
T ss_pred EEEeCC------C--CCCCHHHHh------hHHHHHHHHHHHH------hcCCEEEEeCCCcccchH-HHHHHHHCCeEE
Confidence 222211 1 111122221 2345788888887 5899999996543 3 456777777766
Q ss_pred EEEe
Q 011531 143 LALR 146 (483)
Q Consensus 143 v~~~ 146 (483)
+++.
T Consensus 664 ~Vvr 667 (719)
T PRK11519 664 MVAR 667 (719)
T ss_pred EEEe
Confidence 6653
No 191
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=73.85 E-value=45 Score=31.29 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=29.3
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 6 VNPHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 6 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
+..|++.++. |+-|-..-...||..|++.|++|.++-.+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3455544444 56677777889999999999999999653
No 192
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.79 E-value=24 Score=33.12 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=34.1
Q ss_pred eeEEeccCHHHHhccCCccceeeccCchhHHHHHHhCCceecccc
Q 011531 355 RFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQ 399 (483)
Q Consensus 355 v~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 399 (483)
+.+.+-++-.+|+.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 444577888899977776 8887654 88999999999999875
No 193
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=72.65 E-value=9.1 Score=34.15 Aligned_cols=49 Identities=18% Similarity=0.052 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
+.+.|+++.+.++-.|-....-++.-|..+|++|++++...-.+.+.+.
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 3457999999999999999999999999999999999987665655554
No 194
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.13 E-value=75 Score=30.86 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc--hhhhhhccccccccCCCCCeEEEeCCC
Q 011531 3 RSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN--HDLLLRNTDITSFCNRFPNFQFRSIPS 73 (483)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~f~~~p~ 73 (483)
+..++.|++++..|-.||-=.|.-=|..|++.|.+|.+++.-.. .+.+ -+-|+++++.++.
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l----------~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEEL----------LNHPRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHH----------hcCCceEEEeCCC
Confidence 45678899999999999999999999999999999999986322 2233 2346799999984
No 195
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=72.04 E-value=57 Score=31.22 Aligned_cols=80 Identities=21% Similarity=0.193 Sum_probs=59.5
Q ss_pred ceeEE-eccC---HHHHhccCCccceeec--cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCCH
Q 011531 354 NRFIV-SWAP---QEEVLAHPAVGGFLTH--GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDG 426 (483)
Q Consensus 354 nv~~~-~~~p---~~~ll~~~~~~~~ItH--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~ 426 (483)
|+.+. +++| +.++|+.+++..|+|+ =|+||+.-.+..|+|+++-- +=+.|.... + .|+-+-.+ +.++.
T Consensus 207 ~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e-~gv~Vlf~~d~L~~ 281 (322)
T PRK02797 207 NFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-E-QGLPVLFTGDDLDE 281 (322)
T ss_pred cEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-h-CCCeEEecCCcccH
Confidence 37665 7887 5679999999888875 48999999999999999763 334444444 4 58777655 78888
Q ss_pred HHHHHHHHHHHh
Q 011531 427 SIIEKLVRDLME 438 (483)
Q Consensus 427 ~~l~~~i~~ll~ 438 (483)
..+.++=+++..
T Consensus 282 ~~v~e~~rql~~ 293 (322)
T PRK02797 282 DIVREAQRQLAS 293 (322)
T ss_pred HHHHHHHHHHHh
Confidence 888777666555
No 196
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=71.67 E-value=12 Score=30.06 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=36.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
.|+++.+.+..-|-.-+..|+..|.++||+|.++......+.+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 378999999999999999999999999999999976444444433
No 197
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=71.62 E-value=11 Score=39.23 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=45.7
Q ss_pred CHHHHhccCCccceee---ccCch-hHHHHHHhCCceecccccc-chhHHHHHHHHhhccceecC-C-----CCCHHHHH
Q 011531 362 PQEEVLAHPAVGGFLT---HGGWN-STLEGIAAGVPMICWPQFS-DQLVNSRCVSEVWKIGFDMK-D-----TCDGSIIE 430 (483)
Q Consensus 362 p~~~ll~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~l~-~-----~~~~~~l~ 430 (483)
+..+++..+++ +|. +=|+| ++.||+++|+|+|.....+ ..... ..+.+....|+.+. . .-+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46777866666 665 44554 9999999999999988743 22211 12211112466653 1 23567778
Q ss_pred HHHHHHHh
Q 011531 431 KLVRDLME 438 (483)
Q Consensus 431 ~~i~~ll~ 438 (483)
+++.++++
T Consensus 544 ~~m~~~~~ 551 (590)
T cd03793 544 QYMYEFCQ 551 (590)
T ss_pred HHHHHHhC
Confidence 88888876
No 198
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=70.83 E-value=11 Score=27.95 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
..-++++..+...|...+..+|+.|+++|+.|...-.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4667788888889999999999999999999986544
No 199
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=70.60 E-value=11 Score=41.09 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=68.3
Q ss_pred eEEeccCHHH---HhccCCccceeec---cCch-hHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 356 FIVSWAPQEE---VLAHPAVGGFLTH---GGWN-STLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 356 ~~~~~~p~~~---ll~~~~~~~~ItH---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
++.+++++.+ ++..+++ |+.- -|+| ++.|++++|+|-...|...+----+. + +.-|+.+ ...+.++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv-~P~d~~~ 417 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLV-NPNDIEG 417 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEE-CCCCHHH
Confidence 4457788654 6666666 6643 3554 78899999876322232222111111 1 2225666 4568999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 429 IEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 429 l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
++++|.++|+...++.+++.+++.+.++. -+...-++++++.|....
T Consensus 418 la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 418 IAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 99999999983114445555555555543 355677888888887764
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.92 E-value=9.8 Score=33.91 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
.|+|+...+-|-..-...||..++.+|.+|.+++.+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 356666778899999999999999999999999987664
No 201
>PRK06849 hypothetical protein; Provisional
Probab=69.68 E-value=40 Score=33.57 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
+++|++..... .-.+.+++.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 68888875433 358999999999999999997754
No 202
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=69.66 E-value=46 Score=33.68 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.|+.++..+.. .+.+++-|.+-|-+|+.+++.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 37777776665 888999999999999998774
No 203
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.61 E-value=22 Score=31.33 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=51.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCH
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTA 86 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~ 86 (483)
+++-+--.+.|-+.-..+|+++|.++ |+.|.+-++...-........ .+.+...-+|-+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~-------~~~v~~~~~P~D------------ 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL-------PDRVDVQYLPLD------------ 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--------GGG-SEEE---S------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC-------CCCeEEEEeCcc------------
Confidence 34444456779999999999999998 899888776444333332210 002333334411
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHH--HHHHcCCCeEEEec
Q 011531 87 KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLD--VSEELQIPLLALRT 147 (483)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~--~A~~lgIP~v~~~~ 147 (483)
+...++.+++.+ +||++|.-....| ... .|++.|||++.+..
T Consensus 83 ----------~~~~~~rfl~~~--------~P~~~i~~EtElW-Pnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ----------FPWAVRRFLDHW--------RPDLLIWVETELW-PNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----------SHHHHHHHHHHH----------SEEEEES-----HHHHHH-----S-EEEEEE
T ss_pred ----------CHHHHHHHHHHh--------CCCEEEEEccccC-HHHHHHHhhcCCCEEEEee
Confidence 113356778886 5899888777776 444 56667999999855
No 204
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=69.19 E-value=22 Score=36.99 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=52.1
Q ss_pred eeEEeccCH---HHHhccCCccceeecc---CchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHH
Q 011531 355 RFIVSWAPQ---EEVLAHPAVGGFLTHG---GWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSI 428 (483)
Q Consensus 355 v~~~~~~p~---~~ll~~~~~~~~ItHg---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 428 (483)
|.+.++... ..++...++ +|.=+ |.++..||+.+|+|+| .......|.. ..=|..+ -+.++
T Consensus 411 v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li---~d~~~ 477 (519)
T TIGR03713 411 IAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII---DDISE 477 (519)
T ss_pred EEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe---CCHHH
Confidence 888888873 446755555 88755 7789999999999999 2222334433 4556666 47899
Q ss_pred HHHHHHHHHhH
Q 011531 429 IEKLVRDLMEN 439 (483)
Q Consensus 429 l~~~i~~ll~~ 439 (483)
|.++|..+|.+
T Consensus 478 l~~al~~~L~~ 488 (519)
T TIGR03713 478 LLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHhC
Confidence 99999999996
No 205
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.43 E-value=84 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=29.1
Q ss_pred CCCHHH-HHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCC
Q 011531 18 QGHIKP-MMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIP 72 (483)
Q Consensus 18 ~GH~~p-~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p 72 (483)
+|=+-- .-.|+..|+++||+|++.+.......-. ..+.+++...+|
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~---------~~y~gv~l~~i~ 62 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE---------FEYNGVRLVYIP 62 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC---------cccCCeEEEEeC
Confidence 344444 3457788888999999998754432111 233467887776
No 206
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.54 E-value=4.9 Score=35.45 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCCCHHH------------HHHHHHHHHhCCcEEEEEeCCC
Q 011531 7 NPHVVLLPYPLQGHIKP------------MMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~V~~~~~~~ 45 (483)
..||++...|+.=.+.| -..||+++..+|++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 46777777777665554 5789999999999999999963
No 207
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=67.50 E-value=20 Score=34.60 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCccEEEEcCCCC-cchHHHHHHcCCCeEEEecchh
Q 011531 116 QSPTCVIADGILC-FLTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 116 ~~~D~VI~D~~~~-~~~~~~A~~lgIP~v~~~~~~~ 150 (483)
..||+||+-...- -.+..=|.++|||+|.+.-+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 3699987765433 2166678889999999865443
No 208
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=66.67 E-value=89 Score=28.67 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=34.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCC-cEEEEEeCCCch
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSAN-FQVTFVNTDHNH 47 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rG-H~V~~~~~~~~~ 47 (483)
|||+++.-|+.|-..-...|+.+|.++| ++|.++-.+++.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~ 41 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDS 41 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 6899999999999988888788888886 999999887753
No 209
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=66.46 E-value=32 Score=30.34 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=79.2
Q ss_pred CHHHH-HHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhH
Q 011531 306 TREQM-SELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNST 384 (483)
Q Consensus 306 ~~~~~-~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~ 384 (483)
+.+.+ ..+.+.+...+..++... |.-..+.+.|.++.+++ ++- -||++ .=.++|..+.
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLA--------GyMrIL~~~fl~~~~gr-IlN----------IHPSL--LP~f~G~h~~ 121 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLA--------GYMRILGPEFLSRFEGR-ILN----------IHPSL--LPAFPGLHAH 121 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEc--------chHHHcCHHHHHHhhcc-eEe----------cCccc--ccCCCCchHH
Confidence 34434 558999998888877666 55556777777776664 321 26887 7789999999
Q ss_pred HHHHHhCCceecccccc--chhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 011531 385 LEGIAAGVPMICWPQFS--DQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVAT 453 (483)
Q Consensus 385 ~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~ 453 (483)
.+|+.+|+..-.+-.++ +..+-.-.+. ...+.+...-|.|.|.+.|.+. +- .-|-+..+.+.+
T Consensus 122 ~~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~~Dt~etl~~RV~~~-Eh--~lyp~~v~~~~~ 186 (200)
T COG0299 122 EQALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLPGDTAETLEARVLEQ-EH--RLYPLAVKLLAE 186 (200)
T ss_pred HHHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecCCCCHHHHHHHHHHH-HH--HHHHHHHHHHHh
Confidence 99999999987777543 2222222331 2223332344899999988884 22 556666666554
No 210
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=66.22 E-value=12 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
|+++.+.++-.|..-..-++.-|..+|++|++.....-.+.+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~ 44 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVE 44 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 68999999999999999999999999999999997544444433
No 211
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=65.99 E-value=8.6 Score=35.86 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
....++|+..++.|-..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 456889999999999999999999999889999999998777777554
No 212
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.72 E-value=1.1e+02 Score=28.32 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 16 PLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 16 ~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|+-|-..-...||..|++.|++|..+=-
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 7889999999999999999999998864
No 213
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=65.68 E-value=83 Score=27.36 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFV 41 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~ 41 (483)
--|.+++..+.|-..-.+.+|-+.+.+|++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4567777889999999999999999999999877
No 214
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=65.66 E-value=30 Score=35.05 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEEe
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLALR 146 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~ 146 (483)
.+||+||.+.. ...+|+++|+|++.+.
T Consensus 370 ~~pdliig~~~----~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH----GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch----hHHHHHhcCCCEEEec
Confidence 57999999953 6778999999998763
No 215
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=65.45 E-value=18 Score=31.23 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHH----HH-c-CCCeEEEec
Q 011531 94 KAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVS----EE-L-QIPLLALRT 147 (483)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A----~~-l-gIP~v~~~~ 147 (483)
...+.+.+.+++++ .+||+||+...+.. ...++ +. + ++|.+.+.+
T Consensus 74 ~~~~~~~l~~~l~~--------~~PD~IIsThp~~~-~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 74 SRLFARRLIRLLRE--------FQPDLIISTHPFPA-QVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHhh--------cCCCEEEECCcchh-hhHHHHHHHhhcccCCcEEEEEc
Confidence 33344455555555 68999999987754 33122 22 4 588777654
No 216
>CHL00175 minD septum-site determining protein; Validated
Probab=65.40 E-value=1.2e+02 Score=28.46 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=30.5
Q ss_pred CEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
.|++.+.. |+-|-..-...||..|+++|++|.++-.+..
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34544433 7889999999999999999999999866543
No 217
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=64.96 E-value=74 Score=26.73 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
+.+...++-|-......++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 667778888999999999999999999999988653
No 218
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=64.87 E-value=68 Score=30.02 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhC---CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchH
Q 011531 23 PMMSLAELLGSA---NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKP 99 (483)
Q Consensus 23 p~l~La~~L~~r---GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (483)
-+.+|++.|... |++|+++++.........+ ++...-+++..+.+. .....+........-
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~gha------iT~~~pl~~~~~~~~----~yav~GTPaDCV~la------ 78 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHC------ISYTHPMMIAELGPR----RFAAEGSPADCVLAA------ 78 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccc------ccCCCCeEEEEeCCC----eEEEcCchHHHHHHH------
Confidence 356777877763 4799999996654333222 222223555554421 111223332222111
Q ss_pred HHHHHHHHhhhhhcCCCCccEEEEc----------CCCC---cchHHHHHHcCCCeEEEec
Q 011531 100 AFRDLLISLREETEQRQSPTCVIAD----------GILC---FLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 100 ~~~~ll~~~~~~~~~~~~~D~VI~D----------~~~~---~~~~~~A~~lgIP~v~~~~ 147 (483)
+..++.. .+||+||+- .+.+ + |+.-|..+|||.+.+|.
T Consensus 79 -l~~~~~~--------~~pDlVvSGIN~G~N~g~~v~ySGTVg-AA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 -LYDVMKD--------APPDLVLSGVNRGNNSAENVLYSGTVG-GAMEAALQGLPAIALSQ 129 (261)
T ss_pred -HHHhcCC--------CCCCEEEECCccCCCCCcCcccchhHH-HHHHHHhcCCCeEEEEe
Confidence 1222221 369999873 2222 3 55566678999999975
No 219
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=64.87 E-value=13 Score=34.13 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCCeEEEEecCcccC---CCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccC---H
Q 011531 290 PPKSVLYVSFGSLVG---LTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAP---Q 363 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p---~ 363 (483)
.+++.|.|..|+... .+.+.+.++++.+.+.++++++........ ...-+...+..+.+.+.+.+-.. .
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE-----KEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH-----HHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH-----HHHHHHHHHhcccceEeecCCCCHHHH
Confidence 456778888887663 677889999999988886766544221100 00000111112222133333333 3
Q ss_pred HHHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 364 EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 364 ~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
..++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 568877776 8876 568999999999999998
No 220
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=64.70 E-value=78 Score=30.64 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCCC-----CHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCccc
Q 011531 7 NPHVVLLPYPLQG-----HIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIR 81 (483)
Q Consensus 7 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~ 81 (483)
+.-|++.|+.+.| ...-+..|++.|.++|.+|++++++...+...+.... .+.... +
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~--------------~~~~~~--~-- 235 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL--------------LPGELR--N-- 235 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh--------------CCcccc--c--
Confidence 3456666655433 1235889999999999999999886544332221100 000000 0
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEec
Q 011531 82 SGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~ 147 (483)
..+ ...+.++..-++ +.|++|+. ..+ .+.+|..+|+|++.+..
T Consensus 236 l~g-------------~~sL~el~ali~-------~a~l~I~~--DSG-p~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 236 LAG-------------ETSLDEAVDLIA-------LAKAVVTN--DSG-LMHVAAALNRPLVALYG 278 (334)
T ss_pred CCC-------------CCCHHHHHHHHH-------hCCEEEee--CCH-HHHHHHHcCCCEEEEEC
Confidence 000 011333344443 47999998 566 78899999999999854
No 221
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=64.68 E-value=8.8 Score=34.07 Aligned_cols=40 Identities=13% Similarity=-0.110 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCCCHHH-HHHHHHHHHhCCcEEEEEeCCCc
Q 011531 6 VNPHVVLLPYPLQGHIKP-MMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p-~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+.+||++.-.|+ +..+- ...++++|.++||+|.++.++.-
T Consensus 4 ~~k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 4 KGKRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCCEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 356787777776 44555 79999999999999999999643
No 222
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=64.65 E-value=1e+02 Score=27.42 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHh-CCcEEEEEeCCCc
Q 011531 6 VNPHVVLLPY--PLQGHIKPMMSLAELLGS-ANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il~~~~--~~~GH~~p~l~La~~L~~-rGH~V~~~~~~~~ 46 (483)
.++|++.++. ++-|--.-...||..|++ .|++|.++-.+..
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4566655553 677888889999999997 6999999966544
No 223
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=64.37 E-value=13 Score=28.53 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHHH
Q 011531 24 MMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFRD 103 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (483)
++.+|+.|.+.|+++. +++.-.+.+.+. ++.+..+-+....... ..++. +
T Consensus 2 ~~~~a~~l~~lG~~i~--AT~gTa~~L~~~-----------Gi~~~~v~~~~~~~~~-~~g~~----------------~ 51 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIY--ATEGTAKFLKEH-----------GIEVTEVVNKIGEGES-PDGRV----------------Q 51 (95)
T ss_dssp HHHHHHHHHHTTSEEE--EEHHHHHHHHHT-----------T--EEECCEEHSTG-G-GTHCH----------------H
T ss_pred HHHHHHHHHHCCCEEE--EChHHHHHHHHc-----------CCCceeeeeecccCcc-CCchh----------------H
Confidence 5789999999998775 443455555543 3554444322211100 11111 3
Q ss_pred HHHHhhhhhcCCCCccEEEEcCCCCcc--------hHHHHHHcCCCeE
Q 011531 104 LLISLREETEQRQSPTCVIADGILCFL--------TLDVSEELQIPLL 143 (483)
Q Consensus 104 ll~~~~~~~~~~~~~D~VI~D~~~~~~--------~~~~A~~lgIP~v 143 (483)
+++.+++ .+.|+||..+...-- -.-+|...+||++
T Consensus 52 i~~~i~~-----~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKN-----GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHT-----TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHc-----CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 3334433 689999998654320 1336777888876
No 224
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=64.34 E-value=30 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=28.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 14 PYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 14 ~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
+-|+-|-..-...||..|+++|++|.++-.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34788999999999999999999999997754
No 225
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=63.52 E-value=17 Score=32.80 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=41.4
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
++.|+++.+.++-.|-....-++..|..+|++|++++.+.-.+.+.+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 467999999999999999999999999999999999986555555443
No 226
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.44 E-value=52 Score=24.83 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 24 MMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
++.+++.|.+.|+++. +|. .-.+.+.+
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-GTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-HHHHHHHH
Confidence 4688999999999994 443 44445544
No 227
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=63.11 E-value=16 Score=30.51 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
.++.||++.+.+.-||-.-..-+++.|++.|.+|...+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 368999999999999999999999999999999998775
No 228
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.72 E-value=86 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=24.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q 011531 14 PYPLQGHIKPMMSLAELLGSANFQVTFV 41 (483)
Q Consensus 14 ~~~~~GH~~p~l~La~~L~~rGH~V~~~ 41 (483)
+.+.-|-..-.+.|+..|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4466788899999999999999999986
No 229
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=62.54 E-value=33 Score=31.48 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCC-CCHHH---HHHHHHHHHhCCcEEEEEeCCCch-hhhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 6 VNPHVVLLPYPLQ-GHIKP---MMSLAELLGSANFQVTFVNTDHNH-DLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 6 ~~~~il~~~~~~~-GH~~p---~l~La~~L~~rGH~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
++..|++.+..+. .-..| +..|++.|.++|.+|.+++++... ........ ...++- +..+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-----~~~~~~-~~~~~-------- 169 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-----AGLQNP-VINLA-------- 169 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-----TTHTTT-TEEET--------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-----Hhcccc-eEeec--------
Confidence 4566777776644 22223 689999999999899888886552 22222111 000000 11111
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
... .+.++..-+. ..|++|+- ..+ ...+|..+|+|++.+...
T Consensus 170 -~~~---------------~l~e~~ali~-------~a~~~I~~--Dtg-~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 -GKT---------------SLRELAALIS-------RADLVIGN--DTG-PMHLAAALGTPTVALFGP 211 (247)
T ss_dssp -TTS----------------HHHHHHHHH-------TSSEEEEE--SSH-HHHHHHHTT--EEEEESS
T ss_pred -CCC---------------CHHHHHHHHh-------cCCEEEec--CCh-HHHHHHHHhCCEEEEecC
Confidence 001 1334444443 47999998 566 789999999999998654
No 230
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=62.41 E-value=19 Score=29.76 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
+.+|++.+.++-+|-.----++..|.++|++|+.+......+++.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35899999999999999999999999999999999986665555554
No 231
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=61.52 E-value=66 Score=27.63 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=33.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+++...++-|-......++..|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777788999999999999999999999999987554
No 232
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=61.08 E-value=1.1e+02 Score=31.72 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=71.2
Q ss_pred eeEEeccCHHH---HhccCCccceee--ccCchhHH-HHHHhCC----ceeccccccchhHHHHHHHHhhccceecCCCC
Q 011531 355 RFIVSWAPQEE---VLAHPAVGGFLT--HGGWNSTL-EGIAAGV----PMICWPQFSDQLVNSRCVSEVWKIGFDMKDTC 424 (483)
Q Consensus 355 v~~~~~~p~~~---ll~~~~~~~~It--HgG~gs~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 424 (483)
+++.+.+|+.+ ++..++| ++|| .-|+|-+. |.++++. |+|.--+.+=- .+ +.-++.+ +..
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa-------~~-l~~AllV-NP~ 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAA-------VE-LKGALLT-NPY 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccccch-------hh-cCCCEEE-CCC
Confidence 45568888765 5556777 3443 45888554 9999987 55544443211 22 4445555 567
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 425 DGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
+.++++++|.+.|+...++=+++.+++.+.++.. ....=.+.++.+|...+
T Consensus 434 d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 434 DPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSPQA 484 (487)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhhcc
Confidence 9999999999999932244466666666666652 34555888888876543
No 233
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.05 E-value=1.3e+02 Score=33.19 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 7 NPHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 7 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+.|++.++. |+-|-..-...||..|+..|++|.++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345444433 6889999999999999999999999976544
No 234
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=60.86 E-value=11 Score=38.29 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHhC--------CcE----EEEEeCCCchhhhhhccccc-cccCCCCCeEEEeCCCCCCCCccc--
Q 011531 17 LQGHIKPMMSLAELLGSA--------NFQ----VTFVNTDHNHDLLLRNTDIT-SFCNRFPNFQFRSIPSGLPANVIR-- 81 (483)
Q Consensus 17 ~~GH~~p~l~La~~L~~r--------GH~----V~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~f~~~p~~l~~~~~~-- 81 (483)
+.|.+.-.+.+|++|.+. |-+ |.++|- -.-+......+.. +.+.+.++.....+|-+-..+-..
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TR-lIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kw 373 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTR-LIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKW 373 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE---TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S-
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecc-cccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhc
Confidence 567788899999998653 543 666652 1101000000000 223344567777777322221100
Q ss_pred -CCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCC--CcchHHHHHHcCCCeEEEec
Q 011531 82 -SGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGIL--CFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~--~~~~~~~A~~lgIP~v~~~~ 147 (483)
..-+++.+++.+. ......+++++. .+||+|+..-.. .. |..+|+++|||.+.+..
T Consensus 374 isrf~lWPyLe~fa---~d~~~~i~~e~~------~~PdlI~GnYsDgnlv-A~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 374 ISRFDLWPYLEEFA---DDAEREILAELQ------GKPDLIIGNYSDGNLV-ASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp --GGG-GGGHHHHH---HHHHHHHHHHHT------S--SEEEEEHHHHHHH-HHHHHHHHT-EEEEE-S
T ss_pred cchhhchhhHHHHH---HHHHHHHHHHhC------CCCcEEEeccCcchHH-HHHHHhhcCCceehhhh
Confidence 1112222333332 233344555543 589999987443 25 78899999999998744
No 235
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=60.82 E-value=36 Score=34.42 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=34.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH-hCCcEEEEEeCCCchhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLG-SANFQVTFVNTDHNHDL 49 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~-~rGH~V~~~~~~~~~~~ 49 (483)
.-++++..++-|-..-...||..|. ++|++|.+++.+.+...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 4456777788999999999999997 58999999999866543
No 236
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=60.04 E-value=17 Score=31.74 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||.+++- .|++ --.|.++..+|||+||.+.-.
T Consensus 1 mKIaiIgA--sG~~--Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGA--SGKA--GSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEec--Cchh--HHHHHHHHHhCCCeeEEEEeC
Confidence 56766543 3333 246899999999999998874
No 237
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=60.00 E-value=66 Score=28.10 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcE
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQ 37 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~ 37 (483)
|||+|+..++. ..+..+.+.|.+++|+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 68999876664 5577778899999998
No 238
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=59.71 E-value=26 Score=35.35 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEEe
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLALR 146 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~ 146 (483)
.+||++|.. +. +..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~---s~-~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TP-LVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---Ch-hhHHHHHhCCCEEEec
Confidence 589999988 43 6889999999999964
No 239
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=59.40 E-value=55 Score=30.84 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
..|+|+..++-|-..-...||..|+++|++|.+++.+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 345666667889999999999999999999999998764
No 240
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=59.29 E-value=72 Score=27.72 Aligned_cols=111 Identities=11% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHH-HhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCC-------------CCCCC-----c
Q 011531 19 GHIKPMMSLAELL-GSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPS-------------GLPAN-----V 79 (483)
Q Consensus 19 GH~~p~l~La~~L-~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~-------------~l~~~-----~ 79 (483)
+.+.=.+.+|+.| .+.|.+|.+... .....+.+.. ++.++.++- ..... .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~----------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~ 85 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV----------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGY 85 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC-----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEE
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC----------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEec
Confidence 5677788999999 889999997776 5555565543 255555541 11110 1
Q ss_pred ccCCCCHHHHHHHHHHh-------chHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecch
Q 011531 80 IRSGLTAKDVFDAMKAV-------SKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTHN 149 (483)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~~ 149 (483)
.....++..+.+.+... ....+...++++++ ...|+||.+.. ....|+++|+|++.+.++.
T Consensus 86 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~-----~G~~viVGg~~----~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 86 PNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA-----EGVDVIVGGGV----VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp SS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH-----TT--EEEESHH----HHHHHHHTTSEEEESS--H
T ss_pred ccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH-----cCCcEEECCHH----HHHHHHHcCCcEEEEEecH
Confidence 11222233332222211 24566777777765 67999999952 5788999999999987643
No 241
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=59.24 E-value=14 Score=36.61 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=64.6
Q ss_pred eeEE-eccCHHHHhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC------CCCCHH
Q 011531 355 RFIV-SWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK------DTCDGS 427 (483)
Q Consensus 355 v~~~-~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~------~~~~~~ 427 (483)
+... +..+..++|..+++ +||=- .+.+.|.+..++|+|....-.|+.... .|.-.... ..-+.+
T Consensus 254 i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~~~ 324 (369)
T PF04464_consen 254 IIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYNFE 324 (369)
T ss_dssp EEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESSHH
T ss_pred EEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCCHH
Confidence 6665 55568889988887 99987 458999999999999877666655221 23333321 135789
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011531 428 IIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDI 476 (483)
Q Consensus 428 ~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l 476 (483)
+|.++|..++++. ..++++-+++.+.+... . .| ++-+++++.|
T Consensus 325 eL~~~i~~~~~~~-~~~~~~~~~~~~~~~~~-~-Dg---~s~eri~~~I 367 (369)
T PF04464_consen 325 ELIEAIENIIENP-DEYKEKREKFRDKFFKY-N-DG---NSSERIVNYI 367 (369)
T ss_dssp HHHHHHTTHHHHH-HHTHHHHHHHHHHHSTT----S----HHHHHHHHH
T ss_pred HHHHHHHhhhhCC-HHHHHHHHHHHHHhCCC-C-Cc---hHHHHHHHHH
Confidence 9999999999852 45666677777777442 1 23 3445555544
No 242
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=58.26 E-value=65 Score=31.34 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=59.8
Q ss_pred CCEEEEEcCCCCC-----CHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCccc
Q 011531 7 NPHVVLLPYPLQG-----HIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIR 81 (483)
Q Consensus 7 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~ 81 (483)
+..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+...+.... +..... +.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~---------~~~~~~---l~----- 237 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG---------LPNAVI---LA----- 237 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh---------cCCccc---cC-----
Confidence 3567777773332 2445899999999999999998886333332221110 000000 00
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 82 SGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
. ...+.++..-+. ..|++|+- .++ ...+|..+|.|+|.+...
T Consensus 238 ~---------------k~sL~e~~~li~-------~a~l~I~~--DSg-~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 238 G---------------KTSLEELAALIA-------GADLVIGN--DSG-PMHLAAALGTPTIALYGP 279 (334)
T ss_pred C---------------CCCHHHHHHHHh-------cCCEEEcc--CCh-HHHHHHHcCCCEEEEECC
Confidence 1 111333344332 47998887 566 788999999999998653
No 243
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=58.19 E-value=28 Score=35.23 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+.|||+++..+++-| +|++.|++.++-..+++.|.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 469999999999877 689999999865555555454
No 244
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.18 E-value=6.7 Score=33.48 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
||.++..|..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 566777666654 79999999999999999864
No 245
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=58.13 E-value=40 Score=31.69 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=58.2
Q ss_pred CeEEEEecCccc---CCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCcee-EEec--cC-HH
Q 011531 292 KSVLYVSFGSLV---GLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRF-IVSW--AP-QE 364 (483)
Q Consensus 292 ~~vi~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~--~p-~~ 364 (483)
++.|.+..|+.. ..+.+.+.++++.+...++++++...++.. .....+.+..+..++. +++- +. ..
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~-------~~~~~i~~~~~~~~~~~~~~~~~l~e~~ 193 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAER-------ELAEEIAAALGGPRVVNLAGKTSLRELA 193 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhH-------HHHHHHHHhcCCCccccCcCCCCHHHHH
Confidence 567888887764 367788888998888777887765432110 0111111111111122 2222 22 36
Q ss_pred HHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 365 EVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 365 ~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
.+++++++ +|+.-. |.+.-|.+.|+|++++
T Consensus 194 ~li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 194 ALLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 68877776 998843 7788888999999876
No 246
>PRK14974 cell division protein FtsY; Provisional
Probab=57.90 E-value=38 Score=32.99 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+..|+|+..++-|-..-...||..|.++|++|.+++.+.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 35667777789999999999999999999999999887553
No 247
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.79 E-value=65 Score=32.24 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+..|+|+..++-|-..-...||..|..+|++|.+++.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 46788888889999999999999999999999999997664
No 248
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=57.63 E-value=42 Score=32.82 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=57.7
Q ss_pred CEEEEEcCCCCC---C--HHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccC
Q 011531 8 PHVVLLPYPLQG---H--IKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRS 82 (483)
Q Consensus 8 ~~il~~~~~~~G---H--~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~ 82 (483)
.-|+|.|..+.| + ..-+.+|++.|.++|++|++++.+...+...+... ..+..........
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~--------------~~~~~~~~~~~~l 246 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA--------------ALNTEQQAWCRNL 246 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH--------------hcccccccceeec
Confidence 446666644322 1 22478999999988999999887654332222110 0000000000000
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEec
Q 011531 83 GLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~ 147 (483)
.+. ..+.++..-+. +.|++|+. ..+ .+.+|..+|+|++.+..
T Consensus 247 ~g~-------------~sL~el~ali~-------~a~l~I~n--DTG-p~HlAaA~g~P~valfG 288 (348)
T PRK10916 247 AGE-------------TQLEQAVILIA-------ACKAIVTN--DSG-LMHVAAALNRPLVALYG 288 (348)
T ss_pred cCC-------------CCHHHHHHHHH-------hCCEEEec--CCh-HHHHHHHhCCCEEEEEC
Confidence 000 01334444443 47999998 566 78999999999999854
No 249
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=57 Score=32.17 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+.-|+|+..-+.|-..-+..+|..+.++|+.|.+++.+.+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 34567777789999999999999999999999999987653
No 250
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=57.00 E-value=1.1e+02 Score=30.99 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEEe
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLALR 146 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~ 146 (483)
.+||++|... . ...+|.++|||++.+.
T Consensus 376 ~~pDliiG~s---~-~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---Y-GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---c-HHHHHHHhCCCEEEee
Confidence 5799999984 3 6888999999998864
No 251
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=56.74 E-value=1.1e+02 Score=28.31 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=36.7
Q ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 5 HVNPHVVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 5 ~~~~~il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
++.+|-.|+.. |+-|-..=...||-.|+.-+|.|.++++++.+
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 45677777776 78899999999999999999999999987654
No 252
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=56.39 E-value=1.4e+02 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=26.7
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 10 VVLLP-YPLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 10 il~~~-~~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
|++.. -..-|-..-.+.|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34443 3467999999999999999999998875
No 253
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.08 E-value=1.1e+02 Score=26.50 Aligned_cols=95 Identities=9% Similarity=0.107 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCc-hhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHH
Q 011531 24 MMSLAELLGSANFQVTFVNTDHN-HDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFR 102 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (483)
+..|.+...++|.+|.+++...- .+.+.+... ..+|++++.....++-.. ....
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~-----~~yP~l~ivg~~~g~f~~--------------------~~~~ 91 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR-----RRYPGLRIVGYHHGYFDE--------------------EEEE 91 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH-----HHCCCeEEEEecCCCCCh--------------------hhHH
Confidence 45566666678999999997542 233333222 456778887655332210 1134
Q ss_pred HHHHHhhhhhcCCCCccEEEEcCCCC----cchHHHHHHcCCCeEEEecchh
Q 011531 103 DLLISLREETEQRQSPTCVIADGILC----FLTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 103 ~ll~~~~~~~~~~~~~D~VI~D~~~~----~~~~~~A~~lgIP~v~~~~~~~ 150 (483)
++++.+++ .+||+|++-...+ | .....+.++.+ +.+..+..
T Consensus 92 ~i~~~I~~-----~~pdiv~vglG~PkQE~~-~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 92 AIINRINA-----SGPDIVFVGLGAPKQERW-IARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHHHHHHH-----cCCCEEEEECCCCHHHHH-HHHHHHHCCCC-EEEEECch
Confidence 45555554 6899999998877 6 66777778888 44444433
No 254
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=55.66 E-value=18 Score=33.14 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCCCHHH------------HHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKP------------MMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||++...|+.=.+.| -.+||++|.++||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 4677777766665554 368899999999999998753
No 255
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=55.35 E-value=14 Score=32.28 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=22.4
Q ss_pred ccCCccceeeccCchhHHHHHHhCCceeccccc
Q 011531 368 AHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQF 400 (483)
Q Consensus 368 ~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~ 400 (483)
.+..++++|++||...+..... ++|+|-+|..
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 4566667999999998888877 9999999984
No 256
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=55.26 E-value=1.1e+02 Score=24.44 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchH
Q 011531 20 HIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKP 99 (483)
Q Consensus 20 H~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (483)
+-.-++.+++.|.+.|+++. +++...+.+.+. ++.+..+......+ ... .+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~-----------gi~~~~v~~~~~~~---~~~-------------~~ 61 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN-----------GIPVTPVAWPSEEP---QND-------------KP 61 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc-----------CCCceEeeeccCCC---CCC-------------ch
Confidence 44568899999999999984 444555555432 23333321100000 000 02
Q ss_pred HHHHHHHHhhhhhcCCCCccEEEEcCC---------CCcchHHHHHHcCCCeEE
Q 011531 100 AFRDLLISLREETEQRQSPTCVIADGI---------LCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 100 ~~~~ll~~~~~~~~~~~~~D~VI~D~~---------~~~~~~~~A~~lgIP~v~ 144 (483)
.+.+++++ .++|+||..+. .+. ..-.|-.+|||++.
T Consensus 62 ~i~~~i~~--------~~idlVIn~~~~~~~~~~~~~~~-iRr~Av~~~ip~iT 106 (116)
T cd01423 62 SLRELLAE--------GKIDLVINLPSNRGKRVLDNDYV-MRRAADDFAVPLIT 106 (116)
T ss_pred hHHHHHHc--------CCceEEEECCCCCCCccccCcEe-eehhhHhhCCcccc
Confidence 24444554 58999999543 233 45678889999974
No 257
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.11 E-value=32 Score=28.96 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=56.1
Q ss_pred ccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011531 396 CWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIED 475 (483)
Q Consensus 396 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~ 475 (483)
..|..-.+-.+|+-+++. --++ ..-..+.|.+.+.+|+.| +++-+-++.+++..+.++ |......+.+++-+
T Consensus 77 pyPWt~~~L~aa~el~ee-~eeL---s~deke~~~~sl~dL~~d-~PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlVd 148 (158)
T PF10083_consen 77 PYPWTENALEAANELIEE-DEEL---SPDEKEQFKESLPDLTKD-TPKTKVAATRFKKILSKA---GSIVGDAIRDILVD 148 (158)
T ss_pred CCchHHHHHHHHHHHHHH-hhcC---CHHHHHHHHhhhHHHhhc-CCccHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 356666777777766552 2111 223558899999999984 288899999999999998 77777788888877
Q ss_pred HHHhhh
Q 011531 476 IRLMAR 481 (483)
Q Consensus 476 l~~~~~ 481 (483)
+..-+.
T Consensus 149 v~SEt~ 154 (158)
T PF10083_consen 149 VASETA 154 (158)
T ss_pred HHHHHH
Confidence 765543
No 258
>PRK05920 aromatic acid decarboxylase; Validated
Probab=55.06 E-value=17 Score=32.60 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
.+||++.-.|+ +..+=...+.++|.+.||+|.++.++...+.+
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 46777766665 44478899999999999999999996544444
No 259
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=54.09 E-value=1.5e+02 Score=26.24 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=54.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC---C-Cchh-hhhhccccccccCCCCCeEEEeCCCCCCCCcccCCC
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT---D-HNHD-LLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGL 84 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~ 84 (483)
|.+++..+.|-..-.+.+|-+-.-+|.+|.++-. . .+-+ ......+ ..+.|+..++++.......
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~--------~~v~~~~~~~g~tw~~~~~-- 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFG--------LGVEFHGMGEGFTWETQDR-- 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhc--------cceeEEecCCceeCCCcCc--
Confidence 5566777778776666666666667777777642 1 1111 1111111 2488998887776543211
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCc
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCF 129 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~ 129 (483)
.... ......+....+.+.+ .++|+||.|.+.+.
T Consensus 101 --~~d~----~aa~~~w~~a~~~l~~-----~~ydlviLDEl~~a 134 (198)
T COG2109 101 --EADI----AAAKAGWEHAKEALAD-----GKYDLVILDELNYA 134 (198)
T ss_pred --HHHH----HHHHHHHHHHHHHHhC-----CCCCEEEEehhhHH
Confidence 1111 1122333333333332 68999999987663
No 260
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=53.25 E-value=2.3e+02 Score=27.72 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=61.0
Q ss_pred ceeE-EeccC---HHHHhccCCccceeec--cCchhHHHHHHhCCceeccccccchhHHHHHHHHhhccceecC-CCCCH
Q 011531 354 NRFI-VSWAP---QEEVLAHPAVGGFLTH--GGWNSTLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMK-DTCDG 426 (483)
Q Consensus 354 nv~~-~~~~p---~~~ll~~~~~~~~ItH--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~ 426 (483)
|+.+ .+++| +..+|..+++..|+|. =|+|++.-.+..|+|+++- .+=+.+-... + .|+-+... +.++.
T Consensus 246 ~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~-~~ipVlf~~d~L~~ 320 (360)
T PF07429_consen 246 NFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-E-QGIPVLFYGDELDE 320 (360)
T ss_pred ceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-h-CCCeEEeccccCCH
Confidence 4765 47888 5668989998777764 5899999999999999874 2333444344 5 57777766 88999
Q ss_pred HHHHHHHHHHHh
Q 011531 427 SIIEKLVRDLME 438 (483)
Q Consensus 427 ~~l~~~i~~ll~ 438 (483)
..|.++=+++..
T Consensus 321 ~~v~ea~rql~~ 332 (360)
T PF07429_consen 321 ALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHhh
Confidence 999999998877
No 261
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.23 E-value=25 Score=31.66 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=28.6
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 12 LLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 12 ~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+-.--+.|--.-.+.++.-+...||+|++++++.-.
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 333346688888899999999999999999996543
No 262
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=53.16 E-value=1.7e+02 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
.+||++|.. .. ...+|.++|||++.+
T Consensus 394 ~~pDl~ig~---~~-~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAG---GK-ERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEc---cc-hHHHHHhcCCCEEEc
Confidence 579999986 33 577888999999885
No 263
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.77 E-value=1.4e+02 Score=32.63 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=31.0
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 7 NPHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 7 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+.|++.++. |+-|-..-...||..|+..|++|.++-.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 445555554 5778888889999999999999999976543
No 264
>PRK14099 glycogen synthase; Provisional
Probab=52.49 E-value=23 Score=36.64 Aligned_cols=82 Identities=10% Similarity=0.158 Sum_probs=45.2
Q ss_pred CCCce-eEEeccCH-HHHh-ccCCccceee---ccCch-hHHHHHHhCCceecccccc--chhHHHHHHHHh--hcccee
Q 011531 351 EERNR-FIVSWAPQ-EEVL-AHPAVGGFLT---HGGWN-STLEGIAAGVPMICWPQFS--DQLVNSRCVSEV--WKIGFD 419 (483)
Q Consensus 351 ~~~nv-~~~~~~p~-~~ll-~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~--~G~G~~ 419 (483)
+++ + .+.+|-.. ..++ +.+++ ||. +=|.| +.+||+++|+|.|+....+ |--....-..+. -+.|..
T Consensus 349 ~~~-v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l 425 (485)
T PRK14099 349 PGQ-IGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ 425 (485)
T ss_pred CCC-EEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE
Confidence 344 5 45666332 1223 34565 664 34444 6789999998777665422 321111000010 146777
Q ss_pred cCCCCCHHHHHHHHHHH
Q 011531 420 MKDTCDGSIIEKLVRDL 436 (483)
Q Consensus 420 l~~~~~~~~l~~~i~~l 436 (483)
+ ...+.++|+++|.++
T Consensus 426 ~-~~~d~~~La~ai~~a 441 (485)
T PRK14099 426 F-SPVTADALAAALRKT 441 (485)
T ss_pred e-CCCCHHHHHHHHHHH
Confidence 6 445899999999984
No 265
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=51.89 E-value=1.5e+02 Score=25.32 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=62.2
Q ss_pred EEEcCCCCCCHHH-HHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCC--------CCCCccc
Q 011531 11 VLLPYPLQGHIKP-MMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSG--------LPANVIR 81 (483)
Q Consensus 11 l~~~~~~~GH~~p-~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~--------l~~~~~~ 81 (483)
..+.+...+.... +-.+|.+|.++|++|.=+..... ..- .....+.....++++ +-+++..
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~-~~~---------~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~g 71 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNT-ADG---------DGGRCDMDLRDLPSGRRIRISQDLGPGSRG 71 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc-CCC---------CCCccceEEEECCCCCEEEEeeccCCCCcc
Confidence 3444555566666 45689999999999986665321 100 011223555555532 2222222
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC---------cchHHHHHHcCCCeEEEecchhHH
Q 011531 82 SGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC---------FLTLDVSEELQIPLLALRTHNASY 152 (483)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~---------~~~~~~A~~lgIP~v~~~~~~~~~ 152 (483)
-.-+...+- .....+...+. ..+|++|..-|.- . ....|-..|||+++..+.....
T Consensus 72 CrLD~~~La--------~A~~~l~~al~------~~~DLlivNkFGk~Ea~G~Glr~-~i~~A~~~giPVLt~V~~~~l~ 136 (159)
T PF10649_consen 72 CRLDPGALA--------EASAALRRALA------EGADLLIVNKFGKQEAEGRGLRD-EIAAALAAGIPVLTAVPPRNLE 136 (159)
T ss_pred cccCHHHHH--------HHHHHHHHHHh------cCCCEEEEcccHHhhhcCCCHHH-HHHHHHHCCCCEEEEECHHHHH
Confidence 222322221 11222233333 4799999987632 1 2334556799999987755443
No 266
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=51.36 E-value=18 Score=31.87 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=31.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
.||++.-.|+.|=+.-.+.+.++|.+.|++|.++.++.-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 367777777766666667999999999999999998543
No 267
>PRK09620 hypothetical protein; Provisional
Probab=50.81 E-value=29 Score=31.77 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCCCCHHH------------HHHHHHHHHhCCcEEEEEeCC
Q 011531 6 VNPHVVLLPYPLQGHIKP------------MMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~V~~~~~~ 44 (483)
+.+||++...|+.=.+.| -..||++|.++|++|+++..+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357888887776655444 467999999999999999763
No 268
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=50.80 E-value=1.4e+02 Score=28.94 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
...|+++..++-|-..-...||..|+.+|++|.+++.+.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 34567777778899999999999999999999999987653
No 269
>PRK11823 DNA repair protein RadA; Provisional
Probab=50.26 E-value=57 Score=33.26 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhh
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLL 51 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (483)
-+++..-|+.|-..-+++++..++++|++|.|++.+...+++.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 3466667888999999999999999999999999977666553
No 270
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=50.20 E-value=52 Score=30.56 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCC-CCCcccCCCCH
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGL-PANVIRSGLTA 86 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l-~~~~~~~~~~~ 86 (483)
|||+++..-+-|+ .|++.|.++|+ |++-........+..... ......-..+ ....
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~~~~~~~----------~~~~v~~G~lg~~~~------- 57 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGELLKPEL----------PGLEVRVGRLGDEEG------- 57 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHhhhcccc----------CCceEEECCCCCHHH-------
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC------cchHHHHHHcCCCeEEE
Q 011531 87 KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC------FLTLDVSEELQIPLLAL 145 (483)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~------~~~~~~A~~lgIP~v~~ 145 (483)
+.+++.+ .++|+||=-...+ - +..+|+.+|||++.+
T Consensus 58 --------------l~~~l~~--------~~i~~vIDATHPfA~~is~n-a~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 58 --------------LAEFLRE--------NGIDAVIDATHPFAAEISQN-AIEACRELGIPYLRF 99 (249)
T ss_pred --------------HHHHHHh--------CCCcEEEECCCchHHHHHHH-HHHHHhhcCcceEEE
No 271
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.02 E-value=15 Score=36.46 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
=|++-.-|+.|--.=+++++..|+++| +|.|++.++...++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 355666688999999999999999999 99999998776555
No 272
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=49.99 E-value=29 Score=33.05 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=35.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
|||+++.=|+-|-..-...||..|+++|++|.++-.++.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 679999999999999999999999999999999876544
No 273
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=49.44 E-value=2.1e+02 Score=26.20 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=28.9
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 10 VVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 10 il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|.|+.. |+-|-..-...||..|+++|++|.++-.+.
T Consensus 4 i~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~ 40 (261)
T TIGR01968 4 IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADI 40 (261)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 344443 788999999999999999999999986544
No 274
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.28 E-value=1.9e+02 Score=25.74 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhc
Q 011531 289 QPPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLA 368 (483)
Q Consensus 289 ~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~ 368 (483)
-.++.++.|..|.++. ..+..|...|..+.++- + .+.+.+.+..+..++..........-+.
T Consensus 8 l~~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs-~----------~~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 8 LSNKRVVIVGGGKVAG-------RRAITLLKYGAHIVVIS-P----------ELTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred cCCCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEc-C----------CCCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 3456788888776652 23444555676655443 2 1222322222222255554444555666
Q ss_pred cCCccceeeccCchhHHHHHH----hCCceeccccccchhHHHH-----HHHHhhccceecC-C---CCCHHHHHHHHHH
Q 011531 369 HPAVGGFLTHGGWNSTLEGIA----AGVPMICWPQFSDQLVNSR-----CVSEVWKIGFDMK-D---TCDGSIIEKLVRD 435 (483)
Q Consensus 369 ~~~~~~~ItHgG~gs~~eal~----~GvP~l~~P~~~DQ~~na~-----~v~~~~G~G~~l~-~---~~~~~~l~~~i~~ 435 (483)
.+++ +|.--+.-.+.+.++ .++++-+. |.+..+. .+ ++-++-+.+. . ..-+..|++.|..
T Consensus 70 ~adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 70 DAFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred CceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 6665 888777665555544 45554332 3322221 12 1112222232 1 2233567777777
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHH
Q 011531 436 LMENKREEIMGSTDRVATMARDA 458 (483)
Q Consensus 436 ll~~~~~~~~~~a~~l~~~~~~~ 458 (483)
++..+-..+-+.+.++++.+++.
T Consensus 143 ~~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 143 LYDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HcchhHHHHHHHHHHHHHHHHHh
Confidence 66532255677777777777764
No 275
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=49.23 E-value=1.4e+02 Score=31.16 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=65.4
Q ss_pred CCCHHHHHHHH-HHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCC-C------------CCCC-cc--
Q 011531 18 QGHIKPMMSLA-ELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPS-G------------LPAN-VI-- 80 (483)
Q Consensus 18 ~GH~~p~l~La-~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~-~------------l~~~-~~-- 80 (483)
.|++.=.+.++ +.+.+.|++|.+... .....+.+... +.++.++- + +... ..
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~~----------iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg 104 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRLS----------LPVIVIKPTGFDVMQALARARRIASSIGVVT 104 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhCC----------CCEEEecCChhhHHHHHHHHHhcCCcEEEEe
Confidence 37777788888 447777999987665 56555555432 44444441 1 1110 00
Q ss_pred --cCCCCHHHHHHHHHH-------hchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 81 --RSGLTAKDVFDAMKA-------VSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 81 --~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
........+.+.+.. .........++++++ ..+++||.|.. +...|+++|++.+.+.+.
T Consensus 105 ~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~-----~G~~~viG~~~----~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 105 HQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA-----RGIGAVVGAGL----ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH-----CCCCEEECChH----HHHHHHHcCCceEEEecH
Confidence 011111111111110 124566777777775 68999999952 678899999999998764
No 276
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=49.06 E-value=1.6e+02 Score=30.43 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
.+||++|.. .. ...+|+++|||++-.
T Consensus 392 ~~pDliig~---s~-~~~~a~k~giP~~~~ 417 (475)
T PRK14478 392 AKADIMLSG---GR-SQFIALKAGMPWLDI 417 (475)
T ss_pred cCCCEEEec---Cc-hhhhhhhcCCCEEEc
Confidence 579999997 44 678999999999843
No 277
>PRK10490 sensor protein KdpD; Provisional
Probab=49.02 E-value=76 Score=35.68 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.-++||.+=.-|+-|-.+-|+.-|.+|+++|++|++---+
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 3468999999999999999999999999999999876543
No 278
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=48.82 E-value=38 Score=32.84 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhhcCCCCccEEEEcCCCCc------ch---HHHHHHcCCCeEEE
Q 011531 100 AFRDLLISLREETEQRQSPTCVIADGILCF------LT---LDVSEELQIPLLAL 145 (483)
Q Consensus 100 ~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~------~~---~~~A~~lgIP~v~~ 145 (483)
..+.+++.+++ .+||+||+-+.+-. |+ ..+.++++||.+.-
T Consensus 68 a~~~i~~mv~~-----~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKK-----LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHh-----cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 33444444443 68999999998752 12 23667899999874
No 279
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=48.78 E-value=1.7e+02 Score=24.83 Aligned_cols=138 Identities=16% Similarity=0.180 Sum_probs=77.1
Q ss_pred EEEEecCcccCCCHHHHHHHHHHHHhCCCeE-EEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCc
Q 011531 294 VLYVSFGSLVGLTREQMSELWHGLVNRGQRF-LLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAV 372 (483)
Q Consensus 294 vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~ 372 (483)
.|-|=+||.+ +.+..+...+.|+.+++.+ ++++..+ ..|+...+-..+ .....+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH---------RTPe~m~~ya~~--------------a~~~g~ 58 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH---------RTPEKMFEYAEE--------------AEERGV 58 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc---------CCHHHHHHHHHH--------------HHHCCC
Confidence 3677788766 6777788889999888876 4444332 344433221110 122445
Q ss_pred cceeeccCchh---HHHHHHhCCceeccccccc---hhHHHHHHHHhhccceecC-----CCCCHHHHHHHHHHHHhHhH
Q 011531 373 GGFLTHGGWNS---TLEGIAAGVPMICWPQFSD---QLVNSRCVSEVWKIGFDMK-----DTCDGSIIEKLVRDLMENKR 441 (483)
Q Consensus 373 ~~~ItHgG~gs---~~eal~~GvP~l~~P~~~D---Q~~na~~v~~~~G~G~~l~-----~~~~~~~l~~~i~~ll~~~~ 441 (483)
+.+|.-.|.-. =+-|...=+|+|.+|.... --+----+++ +--|+-+. +..|..-++..|..+- +
T Consensus 59 ~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa~~-d-- 134 (162)
T COG0041 59 KVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILAIK-D-- 134 (162)
T ss_pred eEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHcCC-C--
Confidence 55665444311 1123344689999998632 1122222333 55555432 3445554544443332 4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011531 442 EEIMGSTDRVATMARDAVN 460 (483)
Q Consensus 442 ~~~~~~a~~l~~~~~~~~~ 460 (483)
+.++++.+++++..++.+.
T Consensus 135 ~~l~~kl~~~r~~~~~~V~ 153 (162)
T COG0041 135 PELAEKLAEFREAQTEEVL 153 (162)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987543
No 280
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=48.66 E-value=1.5e+02 Score=26.76 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhhhhcCCCCccEEEEcCCCC---cchHHHHHHcCCCeEEE
Q 011531 98 KPAFRDLLISLREETEQRQSPTCVIADGILC---FLTLDVSEELQIPLLAL 145 (483)
Q Consensus 98 ~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~---~~~~~~A~~lgIP~v~~ 145 (483)
...+..+++.+++ -.+.+.|..+. . +..+|..+|+|++.-
T Consensus 105 ~~~m~~vl~~l~~-------~gl~FvDS~T~~~s~-a~~~A~~~gvp~~~r 147 (213)
T PF04748_consen 105 REAMRWVLEVLKE-------RGLFFVDSRTTPRSV-APQVAKELGVPAARR 147 (213)
T ss_dssp HHHHHHHHHHHHH-------TT-EEEE-S--TT-S-HHHHHHHCT--EEE-
T ss_pred HHHHHHHHHHHHH-------cCCEEEeCCCCcccH-HHHHHHHcCCCEEee
Confidence 4556777888874 58999988874 4 788999999999984
No 281
>PLN02470 acetolactate synthase
Probab=48.47 E-value=69 Score=34.01 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=53.4
Q ss_pred ecCcccCCCH--HHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEe--------ccCHHHHh
Q 011531 298 SFGSLVGLTR--EQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVS--------WAPQEEVL 367 (483)
Q Consensus 298 s~Gs~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~ll 367 (483)
+|||....+. ...+.+++.|++.|.+.|+-+...... .+-+.+.+ ..+ +.++. ++-.-.-.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~------~l~dal~~--~~~-i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM------EIHQALTR--SNC-IRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH------HHHHHHhc--cCC-ceEEEeccHHHHHHHHHHHHH
Confidence 4677664333 235668999999999999887432111 12122211 112 33321 11111112
Q ss_pred ccCCccceeeccCch------hHHHHHHhCCceecccc
Q 011531 368 AHPAVGGFLTHGGWN------STLEGIAAGVPMICWPQ 399 (483)
Q Consensus 368 ~~~~~~~~ItHgG~g------s~~eal~~GvP~l~~P~ 399 (483)
....+.++++|.|-| .+++|...++|+|++.-
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 223455688998854 78999999999999953
No 282
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=47.87 E-value=57 Score=33.66 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=38.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
.-+++..-|+.|--.-.++++.+.+++|.+|.+++.+...+++...
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 4467777789999999999999999999999999998877666554
No 283
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=47.84 E-value=78 Score=31.07 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=52.8
Q ss_pred eEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCCh-hhhhhcCCCceeEEe---------c--
Q 011531 293 SVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPL-AQNEGTEERNRFIVS---------W-- 360 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~nv~~~~---------~-- 360 (483)
.+++.+-||.....+. .++++.+++.+++++|+.+....+ ...++. ++. +...+ |
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e----~~l~~~~g~~-------~~~~~~~~l~~~~~~~~ 69 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIE----KTIIEKENIP-------YYSISSGKLRRYFDLKN 69 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccc----cccCcccCCc-------EEEEeccCcCCCchHHH
Confidence 4677777776654443 246666777789999987544211 001111 110 11110 0
Q ss_pred -----------cCHHHHhc--cCCccceeeccCchh---HHHHHHhCCceecccc
Q 011531 361 -----------APQEEVLA--HPAVGGFLTHGGWNS---TLEGIAAGVPMICWPQ 399 (483)
Q Consensus 361 -----------~p~~~ll~--~~~~~~~ItHgG~gs---~~eal~~GvP~l~~P~ 399 (483)
+--..+++ .|++ +|++||+=| +..|...|+|+++.=.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEECC
Confidence 01112344 4555 999999986 8999999999987443
No 284
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.77 E-value=85 Score=29.74 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC-C-cEEEEEeCCCch
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSA-N-FQVTFVNTDHNH 47 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~r-G-H~V~~~~~~~~~ 47 (483)
..|+|+...+-|-..-...||..++.+ | ++|.+++.+.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 355666667889999999999999987 5 999999997653
No 285
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=47.38 E-value=22 Score=31.21 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+||++...|+.|=+ -...+.++|.++|++|.++.++..
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhH
Confidence 46777766665544 489999999999999999999543
No 286
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=46.80 E-value=68 Score=31.24 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCeEEEEecCcccC---CCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCcee-EEec--cC-H
Q 011531 291 PKSVLYVSFGSLVG---LTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRF-IVSW--AP-Q 363 (483)
Q Consensus 291 ~~~vi~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~--~p-~ 363 (483)
+++.|.+..|+... .+.+.+.++++.+...+.++++...+...+ ........+..+.+++. +++- +. -
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e-----~~~~~~i~~~~~~~~~~~l~g~~sL~el 254 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDE-----LAMVNEIAQGCQTPRVTSLAGKLTLPQL 254 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHH-----HHHHHHHHhhCCCCcccccCCCCCHHHH
Confidence 45678788887543 667888888888877677766554211000 00011111111111122 2332 33 3
Q ss_pred HHHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 364 EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 364 ~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
..+++++++ +|+. -.|.+.=|.+.|+|+|.+
T Consensus 255 ~ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 255 AALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 568877776 9988 789999999999999976
No 287
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.75 E-value=2.1e+02 Score=29.07 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCH
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTA 86 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~ 86 (483)
..|+++...+ .....+++.|.+-|-+|..+......+.... ++ .+.. ...+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------------~~----~~~~-~~~D~ 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------------LP----VETV-VIGDL 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------------CC----cCcE-EeCCH
Confidence 4667666532 4668888889999999988776433221100 01 1110 11222
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 87 KDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
..+.+++++ .++|+||... . +..+|+++|||++.+
T Consensus 363 ------------~~l~~~i~~--------~~~dliig~s---~-~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ------------EDLEDLACA--------AGADLLITNS---H-GRALAQRLALPLVRA 397 (432)
T ss_pred ------------HHHHHHHhh--------cCCCEEEECc---c-hHHHHHHcCCCEEEe
Confidence 112344444 4799999884 3 688999999999986
No 288
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=46.51 E-value=1.2e+02 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.6
Q ss_pred ccceeeccCch------hHHHHHHhCCceecccc
Q 011531 372 VGGFLTHGGWN------STLEGIAAGVPMICWPQ 399 (483)
Q Consensus 372 ~~~~ItHgG~g------s~~eal~~GvP~l~~P~ 399 (483)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 34488888854 78999999999999963
No 289
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=46.38 E-value=1.2e+02 Score=27.31 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCccEEEEcCCCCc-chHHHHHHcCCCeEEEecch
Q 011531 116 QSPTCVIADGILCF-LTLDVSEELQIPLLALRTHN 149 (483)
Q Consensus 116 ~~~D~VI~D~~~~~-~~~~~A~~lgIP~v~~~~~~ 149 (483)
..||+||+-..... .+..=|..+|||++.+.-..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn 176 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTN 176 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTT
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCC
Confidence 35999888765442 14556777999999986543
No 290
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=45.65 E-value=1.7e+02 Score=29.61 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
.+||++|.+.. ...+|+++|||++.+
T Consensus 371 ~~~dliiG~s~----~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSY----GRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECch----hHHHHHHcCCCEEEe
Confidence 57999999953 678899999999876
No 291
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=45.45 E-value=65 Score=27.48 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=22.2
Q ss_pred CccEEEEcCCCC--cchHHHHHHcCCCeEEEec
Q 011531 117 SPTCVIADGILC--FLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 117 ~~D~VI~D~~~~--~~~~~~A~~lgIP~v~~~~ 147 (483)
+||+|++..... ..+..+|.++|.|++.-..
T Consensus 90 ~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 90 GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 699999987654 2267799999999998544
No 292
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.40 E-value=57 Score=26.92 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=38.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
+.||++...+..+|-.----++..|...|++|+........+.+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~ 47 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIAR 47 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 6899999999999999999999999999999998886544444433
No 293
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=45.13 E-value=44 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=25.3
Q ss_pred EEEEecCcccCCCHHHHHHHHHHHHhCCC
Q 011531 294 VLYVSFGSLVGLTREQMSELWHGLVNRGQ 322 (483)
Q Consensus 294 vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 322 (483)
.+|+++||........++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 49999999998888889999999988764
No 294
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=44.92 E-value=1.2e+02 Score=29.63 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=59.8
Q ss_pred CCeEEEEecCcccC---CCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcC-CCceeEEec--cC-H
Q 011531 291 PKSVLYVSFGSLVG---LTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTE-ERNRFIVSW--AP-Q 363 (483)
Q Consensus 291 ~~~vi~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~--~p-~ 363 (483)
+++.|.+..|+... .+.+.+.++++.+.+.+.++++...+...+ ........+... .+.+-+++- +. -
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e-----~~~~~~i~~~~~~~~~~~l~g~~sL~el 256 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD-----LACVNEIAQGCQTPPVTALAGKTTFPEL 256 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH-----HHHHHHHHHhcCCCccccccCCCCHHHH
Confidence 35678888888642 777888899988877788877654221000 000011111111 111223333 33 3
Q ss_pred HHHhccCCccceeeccCchhHHHHHHhCCceecc
Q 011531 364 EEVLAHPAVGGFLTHGGWNSTLEGIAAGVPMICW 397 (483)
Q Consensus 364 ~~ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 397 (483)
..+++++++ ||+. -.|-++=|.+.|+|+|.+
T Consensus 257 ~ali~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 257 GALIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 568877776 9987 568899999999999876
No 295
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=44.85 E-value=35 Score=31.87 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|+|+++.=|+-|...-...||..|+++|++|.++=-++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 67888888999999999999999999999999886544
No 296
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=44.81 E-value=26 Score=30.62 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
++..++++..++.|-..=..+++.++.++|+.|.|++.+...+.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 45679999999999999999999999999999999998666555533
No 297
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=44.80 E-value=1.5e+02 Score=27.76 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCccEEEEcCCCCc-chHHHHHHcCCCeEEEecc
Q 011531 116 QSPTCVIADGILCF-LTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 116 ~~~D~VI~D~~~~~-~~~~~A~~lgIP~v~~~~~ 148 (483)
..||+||+-...-. .+..=|.++|||+|.++-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeC
Confidence 36999887654432 1566788899999998654
No 298
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=44.67 E-value=2.2e+02 Score=28.17 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCEEEEEc-CCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 7 NPHVVLLP-YPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 7 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.++|+++. .|..| ..+|+.|+++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG-----~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLG-----RLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhh-----HHHHHHHHHCCCeEEEeCCC
Confidence 47888887 66666 46899999999999998863
No 299
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=44.55 E-value=34 Score=35.00 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCCCHHH------------HHHHHHHHHhCCcEEEEEeCCC
Q 011531 6 VNPHVVLLPYPLQGHIKP------------MMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~V~~~~~~~ 45 (483)
+.+||++...|++=.+.| -.+||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 468999999999888877 4689999999999999999854
No 300
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=44.46 E-value=1.5e+02 Score=23.18 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhch
Q 011531 19 GHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSK 98 (483)
Q Consensus 19 GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (483)
++-.-++.+++.|.+.|+++. +++...+.+.+. ++.+..+...- . ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~-----------gi~~~~v~~~~--~------------------~~ 56 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA-----------GIPVEVVNKVS--E------------------GR 56 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc-----------CCeEEEEeecC--C------------------Cc
Confidence 355678899999999999985 443555555442 24433332100 0 11
Q ss_pred HHHHHHHHHhhhhhcCCCCccEEEEcCCC-------CcchHHHHHHcCCCeEE
Q 011531 99 PAFRDLLISLREETEQRQSPTCVIADGIL-------CFLTLDVSEELQIPLLA 144 (483)
Q Consensus 99 ~~~~~ll~~~~~~~~~~~~~D~VI~D~~~-------~~~~~~~A~~lgIP~v~ 144 (483)
+.+.+++++ .++|+||..+-. +. ..-.|-.+|||++.
T Consensus 57 ~~i~~~i~~--------~~id~vIn~~~~~~~~~~~~~-iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKN--------GEIQLVINTPSGKRAIRDGFS-IRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHc--------CCeEEEEECCCCCccCccHHH-HHHHHHHhCCCEEe
Confidence 223444443 689999995422 33 45578889999995
No 301
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=44.38 E-value=35 Score=30.41 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
-++||.+-..|+-|-.+-|+.=|++|+++|-+|++..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 468999999999999999999999999999999987654
No 302
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=44.04 E-value=2.2e+02 Score=27.02 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHHHHh--CCcEEEEEeC-CCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 4 SHVNPHVVLLPYPLQGHIKPMMSLAELLGS--ANFQVTFVNT-DHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~--rGH~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
.++++||+++..+..+.+. +|.+.... .+++|.++.+ .+....+++.. ++.+..++... .
T Consensus 86 ~~~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~----------gIp~~~~~~~~--~-- 148 (286)
T PRK13011 86 PAARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH----------GIPFHHFPITP--D-- 148 (286)
T ss_pred cccCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHHh----------CCCEEEeCCCc--C--
Confidence 4578999999999644433 44444433 3688888755 33444444433 36666555211 0
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEe
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALR 146 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~ 146 (483)
+ .......+.+.+++ .++|+|+.-.+...+...+-+.+.-.++-+.
T Consensus 149 ----~--------~~~~~~~~~~~l~~--------~~~Dlivlagy~~il~~~~l~~~~~~iiNiH 194 (286)
T PRK13011 149 ----T--------KPQQEAQVLDVVEE--------SGAELVVLARYMQVLSPELCRKLAGRAINIH 194 (286)
T ss_pred ----c--------hhhhHHHHHHHHHH--------hCcCEEEEeChhhhCCHHHHhhccCCeEEec
Confidence 0 00011223344444 4799999987654324444455544444443
No 303
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=43.58 E-value=1e+02 Score=29.60 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=73.4
Q ss_pred CeEEE-EecCccc--CCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEec--cCH-HH
Q 011531 292 KSVLY-VSFGSLV--GLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSW--APQ-EE 365 (483)
Q Consensus 292 ~~vi~-vs~Gs~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~p~-~~ 365 (483)
++.|. +-.||.. ..+.+.+.++++.+...+.++++..+.+ .+...-..+.+.. .+ +.+++- +.+ ..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~------~e~~~~~~i~~~~-~~-~~l~g~~sL~elaa 249 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE------HEEQRAKRLAEGF-PY-VEVLPKLSLEQVAR 249 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHccC-Cc-ceecCCCCHHHHHH
Confidence 44454 4444433 2777888899988877677766544211 0000111111111 12 334332 333 55
Q ss_pred HhccCCccceeeccCchhHHHHHHhCCceeccccccchhHHH------HHHHHhhccceecCCCCCHHHHHHHHHHHHh
Q 011531 366 VLAHPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSDQLVNS------RCVSEVWKIGFDMKDTCDGSIIEKLVRDLME 438 (483)
Q Consensus 366 ll~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na------~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 438 (483)
+++++++ +|+. -.|.++=|.+.|+|+|.+=--.|...++ ..+ . .++.-+ ..++++.+.+++.++|+
T Consensus 250 li~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~--~~~~cm-~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 250 VLAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-R--SPGKSM-ADLSAETVFQKLETLIS 321 (322)
T ss_pred HHHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-c--CCCccc-ccCCHHHHHHHHHHHhh
Confidence 8877776 9987 5689999999999998874322221111 111 0 011111 57899999999988874
No 304
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=43.42 E-value=2.4e+02 Score=28.85 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=27.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 10 VVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 10 il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|++... ..-|-..-...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 444433 3468899999999999999999998854
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=43.19 E-value=37 Score=33.65 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=34.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhh
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLL 51 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (483)
+++..-|+.|--.-++.++..++.+|.+|.+++.+...+++.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 456666788999999999999999999999999876555543
No 306
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=43.07 E-value=2.5e+02 Score=26.53 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
.++|+++..|..|. .+|+.|+++||.|.++.-+.........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 46888888887775 5799999999999999987776655554
No 307
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=42.89 E-value=56 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
||++...++.|-......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999998865
No 308
>CHL00067 rps2 ribosomal protein S2
Probab=42.30 E-value=1.7e+02 Score=26.77 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCccEEEEcCCCCc-chHHHHHHcCCCeEEEecchh
Q 011531 116 QSPTCVIADGILCF-LTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 116 ~~~D~VI~D~~~~~-~~~~~A~~lgIP~v~~~~~~~ 150 (483)
..||+||+-..... .+..=|.++|||+|.++-+..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 36998877655532 256678889999999866433
No 309
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=42.24 E-value=42 Score=31.37 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|+|+++.=|+-|-..-...||..|+++|++|.++=-+.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 57888877899999999999999999999999985543
No 310
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.11 E-value=26 Score=30.75 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
|++.-.|+.|-+. ...+.+.|.++|++|.++.++.-.+.+
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 4444445544443 488999999999999999996544443
No 311
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=42.01 E-value=31 Score=30.38 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHh-CCcEEEEEeCCCchhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGS-ANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~-rGH~V~~~~~~~~~~~~ 50 (483)
+||++.-.|+.| .+=...++++|.+ .||+|.++.++.-.+.+
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 467777777666 6679999999999 59999999996544433
No 312
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=42.00 E-value=1.5e+02 Score=28.09 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCcEEEEEeCCCch
Q 011531 25 MSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 25 l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
.++|..|+++|++|.++..++..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999986553
No 313
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=41.92 E-value=1.8e+02 Score=25.71 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=42.5
Q ss_pred CE-EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC---CchhhhhhccccccccCCCCCeEEEeCCC
Q 011531 8 PH-VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD---HNHDLLLRNTDITSFCNRFPNFQFRSIPS 73 (483)
Q Consensus 8 ~~-il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~f~~~p~ 73 (483)
.+ |+|+..++.-|-.-...+++.|++.|-+|.+++-. .+.+.++... +.++...+-.|+.+|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~---~~~~~~~~s~~~~~~~ 174 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFI---DAVNGKDGSHLVSVPP 174 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHH---HHhcCCCCceEEEeCC
Confidence 35 67777787777767779999999999999988743 3444444332 2233344567777774
No 314
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.71 E-value=53 Score=26.36 Aligned_cols=101 Identities=9% Similarity=0.061 Sum_probs=51.1
Q ss_pred ceeeccCchhHHHHHHhCCce---------eccc------c----ccchhHHHHHHHHhhccceecC--CCCCHHHHHHH
Q 011531 374 GFLTHGGWNSTLEGIAAGVPM---------ICWP------Q----FSDQLVNSRCVSEVWKIGFDMK--DTCDGSIIEKL 432 (483)
Q Consensus 374 ~~ItHgG~gs~~eal~~GvP~---------l~~P------~----~~DQ~~na~~v~~~~G~G~~l~--~~~~~~~l~~~ 432 (483)
+|.+|||.-|+..+=.+..|+ +.+. . -+-.+.|+.|-- .|.-..+. ..+++|++.+-
T Consensus 29 afcskcgeati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwterki--aga~elvea~~~l~pdevqqf 106 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTERKI--AGAVELVEAGENLNPDEVQQF 106 (160)
T ss_pred HHHhhhchHHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHHHH--hHHHHHHHccccCCHHHHHHH
Confidence 378888877776653333222 1111 0 122445554432 23333333 46777666544
Q ss_pred ---HHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 433 ---VRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 433 ---i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
+.++..+ .++-+-..-+++..+.+. +.+...-+++++-++..-+
T Consensus 107 ~tdlt~ltkd-spktqva~lrfkkvmskv---~t~vasgvr~ivvdvlsea 153 (160)
T COG4306 107 RTDLTDLTKD-SPKTQVATLRFKKVMSKV---ATSVASGVRDIVVDVLSEA 153 (160)
T ss_pred HhhHHHHhhc-CchhHHHHHHHHHHHHHH---HHHHhcchhHHHHHHHHHH
Confidence 4444442 266666777777777665 4444444555555554433
No 315
>PRK12342 hypothetical protein; Provisional
Probab=41.70 E-value=52 Score=30.65 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=24.8
Q ss_pred CccEEEEcCCCCcc-----hHHHHHHcCCCeEEEec
Q 011531 117 SPTCVIADGILCFL-----TLDVSEELQIPLLALRT 147 (483)
Q Consensus 117 ~~D~VI~D~~~~~~-----~~~~A~~lgIP~v~~~~ 147 (483)
.||+|++-..+... +..+|+.+|+|++....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 59999997665431 68899999999999754
No 316
>PRK06321 replicative DNA helicase; Provisional
Probab=41.24 E-value=3e+02 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=35.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCcEEEEEeCCCchhhhhhc
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLG-SANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~-~rGH~V~~~~~~~~~~~~~~~ 53 (483)
+++...|+.|-..-.+.+|...+ +.|+.|.+++-+-...++...
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 56777899999999999999987 459999999986655555443
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=41.21 E-value=3.2e+02 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+...|++...++.|-..-+..|+..|.++|++|.++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34556667668999999999999999999999999987643
No 318
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=41.09 E-value=2e+02 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCccEEEEcCCCC--cchHHHHHHcCCCeEEEecch
Q 011531 116 QSPTCVIADGILC--FLTLDVSEELQIPLLALRTHN 149 (483)
Q Consensus 116 ~~~D~VI~D~~~~--~~~~~~A~~lgIP~v~~~~~~ 149 (483)
..||+||+-...- . +..=|.++|||+|.+.-+.
T Consensus 154 ~~Pd~vii~d~~~~~~-ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKI-AVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred cCCCEEEEeCCCccHH-HHHHHHHcCCCEEEEeeCC
Confidence 3699987765443 3 5667888999999986543
No 319
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.83 E-value=2.1e+02 Score=24.64 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCcEEEEEeCCC-chhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHH
Q 011531 24 MMSLAELLGSANFQVTFVNTDH-NHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFR 102 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (483)
+..|.+...++|.+|.+++..+ ..+++.+... ..+|++++....+++-... ...
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~-----~~yp~l~i~g~~~g~~~~~--------------------~~~ 89 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERLR-----ARYPGLKIVGYHHGYFGPE--------------------EEE 89 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHH-----HHCCCcEEEEecCCCCChh--------------------hHH
Confidence 5566677777899999998743 3333332221 3466788777543222110 011
Q ss_pred HHHHHhhhhhcCCCCccEEEEcCCCC----cchHHHHHHcCCCeEEEe
Q 011531 103 DLLISLREETEQRQSPTCVIADGILC----FLTLDVSEELQIPLLALR 146 (483)
Q Consensus 103 ~ll~~~~~~~~~~~~~D~VI~D~~~~----~~~~~~A~~lgIP~v~~~ 146 (483)
++++.+++ .+||+|++-...+ | +....+.++.+++..+
T Consensus 90 ~i~~~I~~-----~~pdiv~vglG~PkQE~~-~~~~~~~l~~~v~~~v 131 (171)
T cd06533 90 EIIERINA-----SGADILFVGLGAPKQELW-IARHKDRLPVPVAIGV 131 (171)
T ss_pred HHHHHHHH-----cCCCEEEEECCCCHHHHH-HHHHHHHCCCCEEEEe
Confidence 24555544 6899999998876 6 6666666766655543
No 320
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.67 E-value=31 Score=32.88 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|||+++..|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888777665 5678889999999999987
No 321
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=40.63 E-value=35 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
||++.-.|+ +..+-...+.++|.++|++|.++.++.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 566666665 455666799999999999999999854
No 322
>PLN02939 transferase, transferring glycosyl groups
Probab=40.59 E-value=53 Score=36.66 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCC------CCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 5 HVNPHVVLLPYP------LQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 5 ~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.++|||++++.- +.|=-...-.|.++|++.||+|.+++|.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567999998752 3344455678999999999999999983
No 323
>PRK06921 hypothetical protein; Provisional
Probab=40.54 E-value=2.3e+02 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhC-CcEEEEEeC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSA-NFQVTFVNT 43 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~V~~~~~ 43 (483)
...++|...++.|-..=..+||.+|.++ |+.|.+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4568888888888888889999999988 999988876
No 324
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=40.51 E-value=74 Score=27.64 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=43.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc---hhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN---HDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGL 84 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~ 84 (483)
-.|-+++..+.|-..-.+.+|-+-+-+|.+|.++-.=.- .... ......+++.+.....++.....
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~-------~~l~~l~~~~~~~~g~~f~~~~~---- 72 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGEL-------KALKKLPNVEIERFGKGFVWRMN---- 72 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHH-------HHHGGGT--EEEE--TT----GG----
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHH-------HHHHhCCeEEEEEcCCcccccCC----
Confidence 356778888888887666666666666777877753111 1111 11123345777777764433211
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCC
Q 011531 85 TAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILC 128 (483)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~ 128 (483)
..... .......+....+.+.. .++|+||.|....
T Consensus 73 ~~~~~----~~~~~~~~~~a~~~i~~-----~~~dlvILDEi~~ 107 (172)
T PF02572_consen 73 EEEED----RAAAREGLEEAKEAISS-----GEYDLVILDEINY 107 (172)
T ss_dssp GHHHH----HHHHHHHHHHHHHHTT------TT-SEEEEETHHH
T ss_pred CcHHH----HHHHHHHHHHHHHHHhC-----CCCCEEEEcchHH
Confidence 11111 22222333333333321 6899999997644
No 325
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=40.49 E-value=5.5 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=13.8
Q ss_pred CchhHHHHHHhCCceec
Q 011531 380 GWNSTLEGIAAGVPMIC 396 (483)
Q Consensus 380 G~gs~~eal~~GvP~l~ 396 (483)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67899999999998775
No 326
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.89 E-value=59 Score=32.44 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhhcCCCCccEEEEcCCCCc------ch---HHHHHHcCCCeEEE
Q 011531 101 FRDLLISLREETEQRQSPTCVIADGILCF------LT---LDVSEELQIPLLAL 145 (483)
Q Consensus 101 ~~~ll~~~~~~~~~~~~~D~VI~D~~~~~------~~---~~~A~~lgIP~v~~ 145 (483)
.+++++.+++ .+||++|+-+.+-+ |+ ..+.++++||.+.-
T Consensus 65 ~~~i~~mv~k-----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 65 KAKVLEMIKG-----ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHh-----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3444554443 78999999998753 12 22567799999885
No 327
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=39.88 E-value=60 Score=32.41 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=27.0
Q ss_pred HHHHHHHhhhhhcCCCCccEEEEcCCCCc------ch---HHHHHHcCCCeEEE
Q 011531 101 FRDLLISLREETEQRQSPTCVIADGILCF------LT---LDVSEELQIPLLAL 145 (483)
Q Consensus 101 ~~~ll~~~~~~~~~~~~~D~VI~D~~~~~------~~---~~~A~~lgIP~v~~ 145 (483)
.+++++.+++ .+||++|+-+.+-+ |+ ..+.++++||.+.-
T Consensus 65 ~~~i~~mv~k-----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 65 VARVLEMLKD-----KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHh-----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3444554443 78999999998753 12 22567799999885
No 328
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=39.67 E-value=2.9e+02 Score=25.06 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=29.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 10 VVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 10 il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|+|+.. |+-|=..-...||..|+++|++|.++-.+.
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 444444 788888889999999999999999996554
No 329
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=39.65 E-value=1.6e+02 Score=27.77 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCcEEEEEeCCC
Q 011531 25 MSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 25 l~La~~L~~rGH~V~~~~~~~ 45 (483)
.+|..+|.+.||+|++++-..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 468889999999999999643
No 330
>PRK09165 replicative DNA helicase; Provisional
Probab=39.63 E-value=3e+02 Score=28.51 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC---------------CcEEEEEeCCCchhhhhhc
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSA---------------NFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~r---------------GH~V~~~~~~~~~~~~~~~ 53 (483)
=+++...|+.|-..-.+.+|...+.+ |..|.+++.+....++...
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 35777788999999999999888753 8899999987665555443
No 331
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.54 E-value=35 Score=32.88 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
.+|||+++..|+.| ..+|..|++.||+|+++....
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 35899999888866 457888999999999998754
No 332
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=39.42 E-value=59 Score=33.22 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.2
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 9 HVVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 9 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
+|++... ..-|-..-...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4555544 4568999999999999999999998865
No 333
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=39.25 E-value=37 Score=30.44 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhcCCCCccEEEEcCCCC------cchHHHHHHcCCCeEEE
Q 011531 99 PAFRDLLISLREETEQRQSPTCVIADGILC------FLTLDVSEELQIPLLAL 145 (483)
Q Consensus 99 ~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~------~~~~~~A~~lgIP~v~~ 145 (483)
+.+.++++++. .+||+|++|..-. +.|..++-.+++|+|.+
T Consensus 77 P~~l~~l~~l~------~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGV 123 (206)
T PF04493_consen 77 PCILEALEKLK------NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGV 123 (206)
T ss_dssp HHHHHHHHTSS------S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEE
T ss_pred HHHHHHHHHhc------ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEE
Confidence 55566777776 5899999998754 23566777889999997
No 334
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.22 E-value=60 Score=29.62 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=35.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
.-+++...++.|-..-..+++.+.+++|..|.|++.+...+.+.+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 445666778889999999998888889999999999766555544
No 335
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=39.05 E-value=32 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
|||+++..|+.| ..+|..|+++||+|+++..+...+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKAL 38 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHH
Confidence 578888777765 46788899999999999874333333
No 336
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=38.91 E-value=68 Score=27.33 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCCCCCEEEEEcCCCCCCHHH-HHHHHHHHHhC--CcEEEEEeCCCchhhhhhccc
Q 011531 3 RSHVNPHVVLLPYPLQGHIKP-MMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTD 55 (483)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p-~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~ 55 (483)
++++++||+-.-.|+ ||..| ..++-++|.++ +|+|+++-+ ...+.+.+..+
T Consensus 4 ~~~~~~rIaWgITGa-G~~L~Et~~imk~lk~~~~~~~v~v~lS-kageeVvk~Yg 57 (187)
T COG1036 4 TEKKKKRIAWGITGA-GHLLPETYQIMKELKKEYGDVEVDVFLS-KAGEEVVKMYG 57 (187)
T ss_pred cccccceEEEEEecc-ccccHHHHHHHHHHHhhcCCceEEEeeh-hhHHHHHHHHH
Confidence 456778887765555 88777 88999999998 899999888 45555555443
No 337
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=38.84 E-value=32 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 18 QGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 18 ~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
.-.+--.+-++..|.++||+|++.+++...+-+
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 344455778899999999999999996443333
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=38.54 E-value=48 Score=28.30 Aligned_cols=38 Identities=21% Similarity=0.049 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
..+++++..|.-| ...++.|.+.||+|+++++ ...+.+
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp-~~~~~l 50 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP-EICKEM 50 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC-ccCHHH
Confidence 4678887766533 6789999999999999965 444444
No 339
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=38.49 E-value=67 Score=25.65 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=34.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
++..+.++..|-....-++..|.++|++|.++......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5677788889999999999999999999999977544444433
No 340
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=38.08 E-value=2.4e+02 Score=23.58 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRS 82 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~ 82 (483)
..+++|++.. ..++=.-++.+++.|.+. ||++. +++...+.+.+.+| +.+..+- . +. .
T Consensus 2 ~~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l~--AT~gTa~~L~~~~G----------i~v~~vi---~-~~--~ 61 (142)
T PRK05234 2 PARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHELY--ATGTTGGLIQEATG----------LDVTRLL---S-GP--L 61 (142)
T ss_pred CcCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEEE--EeChHHHHHHhccC----------CeeEEEE---c-CC--C
Confidence 3456676665 445667789999999999 99963 44455556655423 3333321 0 00 1
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcC--CCCc-------chHHHHHHcCCCeEEEe
Q 011531 83 GLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADG--ILCF-------LTLDVSEELQIPLLALR 146 (483)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~--~~~~-------~~~~~A~~lgIP~v~~~ 146 (483)
.++ +.+.+++.. .+.|+||..+ ...- .-.-+|-..+||++...
T Consensus 62 gg~-------------~~i~~~I~~--------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 62 GGD-------------QQIGALIAE--------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred CCc-------------hhHHHHHHc--------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 111 223344444 5899999954 3221 02336888899999854
No 341
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.87 E-value=3.3e+02 Score=25.89 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcc
Q 011531 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVI 80 (483)
Q Consensus 1 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~ 80 (483)
+....+++||+++..+..+.+.-++.-.+.=.-...=+.+++.......+++..+ +.+..++........
T Consensus 83 l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g----------Ip~~~~~~~~~~~~~ 152 (286)
T PRK06027 83 LLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFG----------IPFHHVPVTKETKAE 152 (286)
T ss_pred EcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhC----------CCEEEeccCccccch
Q ss_pred cCCCCHHHHHHHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 81 RSGLTAKDVFDAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
....+.+.+++ .++|+|+.-.+..-+...+-..+.-.++-++++
T Consensus 153 ----------------~~~~~~~~l~~--------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 153 ----------------AEARLLELIDE--------YQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------------hHHHHHHHHHH--------hCCCEEEEecchhhcCHHHHhhccCCceecCcc
No 342
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=37.83 E-value=33 Score=30.82 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhcCCCCccEEEEcCCCC------cchHHHHHHcCCCeEEE
Q 011531 99 PAFRDLLISLREETEQRQSPTCVIADGILC------FLTLDVSEELQIPLLAL 145 (483)
Q Consensus 99 ~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~------~~~~~~A~~lgIP~v~~ 145 (483)
+.+...++++. ..||+|++|..-. +.|..+...+++|+|.+
T Consensus 81 p~l~~~~~~l~------~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 81 PPLLEALEKLK------TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHHhCC------CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 33566666665 4799999998754 22444555678888887
No 343
>PRK13768 GTPase; Provisional
Probab=37.80 E-value=1.3e+02 Score=27.96 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
.+++...++-|-..-...++..|+.+|++|.++..++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4566667788999989999999999999999998754
No 344
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.75 E-value=66 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
+|++.+..+-+|-.----++..|..+|++|+.+......+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 578889999999999999999999999999999876555555443
No 345
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.34 E-value=3.3e+02 Score=28.91 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=47.6
Q ss_pred ccceeeccCchhHHHHHHh---CCceeccccccc--hhHHH--HHHHHhh--cccee---cCCCCCHHHHHHHHHHHHhH
Q 011531 372 VGGFLTHGGWNSTLEGIAA---GVPMICWPQFSD--QLVNS--RCVSEVW--KIGFD---MKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 372 ~~~~ItHgG~gs~~eal~~---GvP~l~~P~~~D--Q~~na--~~v~~~~--G~G~~---l~~~~~~~~l~~~i~~ll~~ 439 (483)
++++|.-.|+-.-+-.+.+ -+|+|.+|.-.. -...+ ..+ + + |+.+. +++..+..-++. ++|.-
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~-~p~g~pv~~v~i~~~~~aa~~a~---~i~~~ 540 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-Q-MPRGVPVATVAIGNATNAGLLAV---RMLGA 540 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-c-CCCCCeEEEEecCChHHHHHHHH---HHHhc
Confidence 4458888776433333333 469999998532 22333 233 3 5 53322 223445554443 44441
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 011531 440 KREEIMGSTDRVATMARDAVNE 461 (483)
Q Consensus 440 ~~~~~~~~a~~l~~~~~~~~~~ 461 (483)
..+.++++.+..++.+++.+.+
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 541 SDPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 1188899999998888875333
No 346
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=37.30 E-value=1.1e+02 Score=26.24 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred ccceeeccCc------hhHHHHHHhCCceecccc
Q 011531 372 VGGFLTHGGW------NSTLEGIAAGVPMICWPQ 399 (483)
Q Consensus 372 ~~~~ItHgG~------gs~~eal~~GvP~l~~P~ 399 (483)
..+++++.|- +.+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3447777664 478899999999999964
No 347
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=37.05 E-value=47 Score=30.51 Aligned_cols=36 Identities=6% Similarity=-0.074 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCC
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDH 45 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~ 45 (483)
|++.-.|+.+=++-...|.+.|+++ ||+|.++.++.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 4444444433447899999999999 99999999954
No 348
>PRK13604 luxD acyl transferase; Provisional
Probab=36.95 E-value=78 Score=30.41 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
++.+.++++.+..++-..+..+|+.|.++|+.|..+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 4456777788877787779999999999999998654
No 349
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.90 E-value=2.8e+02 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 15 YPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 15 ~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
-|+-|--.-...||..|++.|.+|-++=.+-....+
T Consensus 66 kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~ 101 (265)
T COG0489 66 KGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSI 101 (265)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCch
Confidence 367788888899999999999999999754443333
No 350
>PRK14098 glycogen synthase; Provisional
Probab=36.88 E-value=58 Score=33.66 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=29.0
Q ss_pred CCEEEEEcCC------CCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 7 NPHVVLLPYP------LQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 7 ~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
.|||++++.- +.|=-.-.-+|.++|+++||+|.++++
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P 47 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMP 47 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcC
Confidence 4899988641 334445577889999999999999998
No 351
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=36.49 E-value=66 Score=30.00 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCc-----chHHHHHHcCCCeEEEec
Q 011531 117 SPTCVIADGILCF-----LTLDVSEELQIPLLALRT 147 (483)
Q Consensus 117 ~~D~VI~D~~~~~-----~~~~~A~~lgIP~v~~~~ 147 (483)
.||+||+-..+.. .+..+|+.+|+|++....
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 5999999765432 278899999999999755
No 352
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=36.18 E-value=78 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=27.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 14 PYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 14 ~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
+.|+.|-.=-.+.|++.|.++|++|.+++-
T Consensus 37 tvGGTGKTP~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHCCCEEEEECC
Confidence 357889999999999999999999999986
No 353
>PRK07773 replicative DNA helicase; Validated
Probab=35.89 E-value=2.5e+02 Score=31.55 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-CcEEEEEeCCCchhhhhhc
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSA-NFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~r-GH~V~~~~~~~~~~~~~~~ 53 (483)
=+++...|+.|-..-.+.+|...+.+ |..|.+++-+....++...
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 36777789999999999999998855 8899999987666555443
No 354
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=35.87 E-value=30 Score=32.00 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCC
Q 011531 22 KPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 22 ~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.-.-.|+++|+++||+|+++++.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 44678899999999999999984
No 355
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=35.65 E-value=2.1e+02 Score=27.77 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=27.7
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 13 LPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 13 ~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
++.|+.|-.=-.+.|++.|.++|++|.+++-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSR 73 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSR 73 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcC
Confidence 3457889999999999999999999999987
No 356
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=64 Score=32.76 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
++--|.|+..-+-|--.-+..||-.|.+++|+|.+++-+.+..-.++.
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQ 424 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQ 424 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHH
Confidence 334567788889999999999999999999999999987776544443
No 357
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.55 E-value=2.1e+02 Score=29.65 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNT 43 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~ 43 (483)
|||+++..+++.| +|++.|++. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899998888877 578888877 999998855
No 358
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=35.49 E-value=2.5e+02 Score=25.58 Aligned_cols=33 Identities=15% Similarity=-0.024 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
-|.++++.++. .=-.+++++|+++|++|+.+..
T Consensus 10 ~k~~lItG~~~---gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 10 GKVAVVTGCDT---GLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCEEEEECCCc---hHHHHHHHHHHHCCCEEEEecC
Confidence 35666666553 3357889999999999987654
No 359
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=35.13 E-value=61 Score=32.92 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 2 ERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 2 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
++.. .+||+++..+..| +++++.|.++|++|++.-....
T Consensus 3 ~~~~-~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 3 EDFQ-GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred cccc-CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 3444 8999999999888 9999999999999998875443
No 360
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=34.90 E-value=3.3e+02 Score=24.30 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhc-CCCceeEEeccCHHHHhc
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGT-EERNRFIVSWAPQEEVLA 368 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~~p~~~ll~ 368 (483)
.++++++|..|..+ . .-+..|...|.++.++-.. +.+++.+-. .++ +.+..--.+...+.
T Consensus 8 ~gk~vlVvGgG~va------~-rk~~~Ll~~ga~VtVvsp~-----------~~~~l~~l~~~~~-i~~~~~~~~~~dl~ 68 (205)
T TIGR01470 8 EGRAVLVVGGGDVA------L-RKARLLLKAGAQLRVIAEE-----------LESELTLLAEQGG-ITWLARCFDADILE 68 (205)
T ss_pred CCCeEEEECcCHHH------H-HHHHHHHHCCCEEEEEcCC-----------CCHHHHHHHHcCC-EEEEeCCCCHHHhC
Confidence 34678888877655 1 2234455567776544321 112332211 123 65542222344565
Q ss_pred cCCccceeeccCchhH-----HHHHHhCCcee--ccccccchhHHHHHHHHhhccceecC----CCCCHHHHHHHHHHHH
Q 011531 369 HPAVGGFLTHGGWNST-----LEGIAAGVPMI--CWPQFSDQLVNSRCVSEVWKIGFDMK----DTCDGSIIEKLVRDLM 437 (483)
Q Consensus 369 ~~~~~~~ItHgG~gs~-----~eal~~GvP~l--~~P~~~DQ~~na~~v~~~~G~G~~l~----~~~~~~~l~~~i~~ll 437 (483)
...+ +|..-|...+ .+|-..|+|+- --|-..|=. .-..+ ++-++-+.+. ...-...|++.|.+++
T Consensus 69 ~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~-~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l 144 (205)
T TIGR01470 69 GAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFI-FPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLL 144 (205)
T ss_pred CcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEE-EeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 5555 8887777533 34456788883 333333311 11122 2112222232 1233466777777777
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 011531 438 ENKREEIMGSTDRVATMARDA 458 (483)
Q Consensus 438 ~~~~~~~~~~a~~l~~~~~~~ 458 (483)
.+.-..+-+...++++.+++.
T Consensus 145 ~~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 145 PPSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred chhHHHHHHHHHHHHHHHHhh
Confidence 522255666667777776653
No 361
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.68 E-value=2.8e+02 Score=25.74 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHHH
Q 011531 24 MMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFRD 103 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (483)
-..|+++|...++.+++.+....-.......+ + ....+.. -.+.+.+
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~----------------~-------~~~~G~l----------~~e~l~~ 60 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQIG----------------P-------VRVGGFL----------GAEGLAA 60 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhccC----------------C-------eeecCcC----------CHHHHHH
Confidence 47899999999988777776443222222111 0 0011100 2244666
Q ss_pred HHHHhhhhhcCCCCccEEEEcCCCCcc------hHHHHHHcCCCeEEE
Q 011531 104 LLISLREETEQRQSPTCVIADGILCFL------TLDVSEELQIPLLAL 145 (483)
Q Consensus 104 ll~~~~~~~~~~~~~D~VI~D~~~~~~------~~~~A~~lgIP~v~~ 145 (483)
++++ .+.|+|| |...+++ +.-+|+..|||++.+
T Consensus 61 ~l~e--------~~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 61 FLRE--------EGIDLLI-DATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHH--------cCCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 6766 5688776 4444430 244788899999997
No 362
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.54 E-value=60 Score=28.26 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHHh-CCcEEEEEeCCCc
Q 011531 10 VVLLPYPLQGHIKP-MMSLAELLGS-ANFQVTFVNTDHN 46 (483)
Q Consensus 10 il~~~~~~~GH~~p-~l~La~~L~~-rGH~V~~~~~~~~ 46 (483)
|+..-.++ ||... ...+.++|++ +||+|.++.++.-
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 44444444 77766 8899999984 5999999999543
No 363
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.38 E-value=4e+02 Score=26.76 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
.+||++|... . ...+|+++|||++..
T Consensus 355 ~~pDl~ig~s---~-~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGG---K-ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECC---c-chhhHHhcCCCEEEc
Confidence 4799999993 3 567899999999854
No 364
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=34.37 E-value=44 Score=34.19 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhh
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLL 51 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~ 51 (483)
=+++..-|+.|-..-++.++..++++|++|.|++.+....++.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 3466666888999999999999999999999999876665553
No 365
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=34.12 E-value=1.9e+02 Score=29.39 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|||+++..+++.| +|++.|++.|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 6999988888776 578899999988887744
No 366
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=34.11 E-value=1.4e+02 Score=26.83 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
.-+++..-|+.|-..-.+.++..-+++|+.|.+++.+...+++.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 3455666678888888888888888889999999997776666554
No 367
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=33.68 E-value=4.7e+02 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=32.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCcEEEEEeCCCch
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLG-SANFQVTFVNTDHNH 47 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~-~rGH~V~~~~~~~~~ 47 (483)
.+|...++-|--.-.-.|+..|. .+|+.|.++..+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 35677788899999999999998 689999999987665
No 368
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=33.49 E-value=4.4e+02 Score=25.30 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCEE-EEEc-CCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 7 NPHV-VLLP-YPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 7 ~~~i-l~~~-~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+.|+ .|+. -|+-|-..-...||..|+++|.+|.++=.+..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~ 133 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPW 133 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 3455 4443 37889999999999999999999998855433
No 369
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=27 Score=31.43 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHH-
Q 011531 17 LQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKA- 95 (483)
Q Consensus 17 ~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~- 95 (483)
+..|+...+.++..++.+|=.+.|+++...++.+.+.... ...-+.+-...-.+-. ......+..+..
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~--------r~~gy~~~~~w~~G~l---TN~~~l~g~~~~~ 158 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAAR--------RAGGYSHNRKWLGGLL---TNARELFGALVRK 158 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHH--------HhcCceeeeeecccee---ecchhhccccccc
Confidence 4567888889999999999999999997776666554321 1111111111111100 001111111111
Q ss_pred -hchHHHHHHHHHhhhhhcCCCCccEEEE-cCCCCcchHHHHHHcCCCeEEEecchh
Q 011531 96 -VSKPAFRDLLISLREETEQRQSPTCVIA-DGILCFLTLDVSEELQIPLLALRTHNA 150 (483)
Q Consensus 96 -~~~~~~~~ll~~~~~~~~~~~~~D~VI~-D~~~~~~~~~~A~~lgIP~v~~~~~~~ 150 (483)
.+.+-..-++.. ..+|+||+ |....-.+..=|.+++||+|.+.-..+
T Consensus 159 ~~~~pd~~~f~~t--------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 159 FLSLPDALCFLPT--------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred ccCCCcceeeccc--------CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 011111122222 45788776 444332277789999999999876544
No 370
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=33.44 E-value=1.8e+02 Score=25.70 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=41.8
Q ss_pred HHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 388 IAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 388 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
.-...|+|.+.-++|=++-.+.. + .|+---|.+.++...|.++|.+.+..
T Consensus 73 ~~~~~PVIfiTGhgDIpmaV~Am-K-~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 73 RGIRLPVIFLTGHGDIPMAVQAM-K-AGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred cCCCCCEEEEeCCCChHHHHHHH-H-cchhhHHhCCCchHHHHHHHHHHHHH
Confidence 44567999999999999887777 4 68777787889999999999999984
No 371
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=33.38 E-value=32 Score=18.18 Aligned_cols=17 Identities=29% Similarity=0.940 Sum_probs=13.4
Q ss_pred ccccccccCCCCeEEEE
Q 011531 281 SCMTWLNSQPPKSVLYV 297 (483)
Q Consensus 281 ~l~~~l~~~~~~~vi~v 297 (483)
.+.+|.+..+++..+|+
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 47789998888877775
No 372
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.14 E-value=53 Score=31.51 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.+|||.|+..|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999777655 57899999999999988764
No 373
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.10 E-value=57 Score=31.70 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
...++|+..++.|-..=..++|.+|.++|+.|.+++.+.....+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 35678888888899988999999999999999999986555444
No 374
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.53 E-value=73 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=24.0
Q ss_pred eEEEEecCcccCCCHH-HHHHHHHHHHhC--CCeEEEEEc
Q 011531 293 SVLYVSFGSLVGLTRE-QMSELWHGLVNR--GQRFLLVVR 329 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~~-~~~~~~~a~~~~--~~~~i~~~~ 329 (483)
.++++||||....... .+..+.+.++.. ++.+.|.+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfT 41 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFT 41 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEch
Confidence 5899999999876555 667777777653 778888873
No 375
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=32.13 E-value=6.9e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.0
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 9 HVVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 9 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
.|++.+. ..-|-..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 4666655 4578999999999999999999998865
No 376
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.01 E-value=3.5e+02 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=33.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH--hCCcEEEEEeCCCch
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLG--SANFQVTFVNTDHNH 47 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~--~rGH~V~~~~~~~~~ 47 (483)
..++|+..++-|-..-...||..++ ..|++|.+++.+.+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 4567777778899999999999998 568999999997753
No 377
>PRK04148 hypothetical protein; Provisional
Probab=32.00 E-value=95 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
+.+|++.+..| .| ..+|..|++.||+|+.+=..+
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 45788888888 33 346888999999999776533
No 378
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=31.84 E-value=53 Score=29.92 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=25.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|+|+++..|-.| ..||+.|.++||+|+.+-.+.
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 456666665443 689999999999999887743
No 379
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=31.79 E-value=4e+02 Score=30.20 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEEec
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~ 147 (483)
.+||++|.... ...+|+++|||++....
T Consensus 388 ~~pDLlig~~~----~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 388 KMPDLIVAGGK----TKFLALKTRTPFLDINH 415 (917)
T ss_pred cCCCEEEecCc----hhhHHHHcCCCeEEccC
Confidence 57999999643 57789999999997653
No 380
>PRK05114 hypothetical protein; Provisional
Probab=31.76 E-value=1.6e+02 Score=20.19 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 442 EEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 442 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
+.-+++++++.+.+.. |=|+..++.-..+.|+..+
T Consensus 11 eeQQ~AVErIq~LMaq----GmSsgEAI~~VA~eiRe~~ 45 (59)
T PRK05114 11 EQQQKAVERIQELMAQ----GMSSGEAIALVAEELRANH 45 (59)
T ss_pred HHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHH
Confidence 3445666666666655 7777777777777776654
No 381
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.57 E-value=3.6e+02 Score=23.73 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCCc
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDHN 46 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~~ 46 (483)
++ ++-.|+.||.-=|+.|-+.|.++ +-......++..
T Consensus 40 ~~-lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~m 78 (211)
T KOG3339|consen 40 ST-LVVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEM 78 (211)
T ss_pred eE-EEEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCchh
Confidence 44 44467889999999999999776 333334444443
No 382
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=31.48 E-value=5.5e+02 Score=25.76 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCcee-EEeccCHHHHhc
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRF-IVSWAPQEEVLA 368 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~~p~~~ll~ 368 (483)
.++|.|-+| |...+..-+..+.+.|++.|+.++.--- +|.|+ ...++-..+..+- |.+.-.+...=
T Consensus 183 ~~kp~I~iT---mfGvTTp~V~~~~~~Le~~G~Ev~VFHA----tG~GG-----~aME~Li~~G~~~~VlDlTttEl~d- 249 (403)
T PF06792_consen 183 EDKPLIGIT---MFGVTTPCVDAIRERLEEEGYEVLVFHA----TGTGG-----RAMERLIREGQFDGVLDLTTTELAD- 249 (403)
T ss_pred CCCcEEEEE---CCCCcHHHHHHHHHHHHhcCCeEEEEcC----CCCch-----HHHHHHHHcCCcEEEEECcHHHHHH-
Confidence 456778775 3556667788899999998998764331 11122 1222111111132 23555543211
Q ss_pred cCCccceeeccCchhHHHHHHhCCceeccccccc
Q 011531 369 HPAVGGFLTHGGWNSTLEGIAAGVPMICWPQFSD 402 (483)
Q Consensus 369 ~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~D 402 (483)
--+ .-|..+|-.-+-.|...|+|+|+.|-.-|
T Consensus 250 -~l~-GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 250 -ELF-GGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred -HHh-CCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 111 23567788899999999999999997544
No 383
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.23 E-value=1e+02 Score=28.52 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=29.4
Q ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 1 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|.+.+-+-|+++++.++.|. -=-.++|+.|+++|++|++...
T Consensus 1 ~~~~~~~~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNM-SISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred CCCcccCCcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEeC
Confidence 45544445788888887631 0346788999999999987653
No 384
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.22 E-value=68 Score=28.90 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=22.5
Q ss_pred CCCCCCCCEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 1 MERSHVNPHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 1 ~~~~~~~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
||..+...++++..- |+.|| +||+++.+.|++|.-.+
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGY-----ALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccCCCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEc
Confidence 343333344444332 44455 68999999999998433
No 385
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.20 E-value=59 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCcEEEEEeCC
Q 011531 25 MSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 25 l~La~~L~~rGH~V~~~~~~ 44 (483)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 67789999999999998653
No 386
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=31.09 E-value=89 Score=28.45 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcE-EEEEeC
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQ-VTFVNT 43 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~-V~~~~~ 43 (483)
|+|+..|..|--.....|.+.|+++||+ ++.+..
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 5777789999999999999999999987 444444
No 387
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.93 E-value=61 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 011531 425 DGSIIEKLVRDLMENKREEIMGSTDRV 451 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~~~~~~~~~a~~l 451 (483)
+++.|.+||..+.++. -++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~-~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK-MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS-S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 5788999999998753 5566666554
No 388
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=30.88 E-value=2.6e+02 Score=29.13 Aligned_cols=26 Identities=12% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 116 QSPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
.+||++|.+. . +..+|+++|||++.+
T Consensus 436 ~~~DlliG~s---~-~k~~a~~~giPlir~ 461 (515)
T TIGR01286 436 EPVDFLIGNS---Y-GKYIQRDTLVPLIRI 461 (515)
T ss_pred cCCCEEEECc---h-HHHHHHHcCCCEEEe
Confidence 5799999884 3 688899999999986
No 389
>PRK05636 replicative DNA helicase; Provisional
Probab=30.87 E-value=96 Score=32.23 Aligned_cols=45 Identities=7% Similarity=0.098 Sum_probs=34.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH-hCCcEEEEEeCCCchhhhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLG-SANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~-~rGH~V~~~~~~~~~~~~~~ 52 (483)
-=+++...|+.|-..-.+.+|...+ +.|..|.+++.+-...++..
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 3357777889999999999998876 46899999987655444433
No 390
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.73 E-value=73 Score=31.94 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
+++||++.-.|+. ..+-...+.++|.+.|++|.++.++.-.+.+
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 4678887777764 5667899999999999999999996543333
No 391
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=30.66 E-value=6.2e+02 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 16 PLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 16 ~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
..-|-..-...|++.|+++|.+|..+-+
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3457888899999999999999998766
No 392
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=30.27 E-value=1.4e+02 Score=28.95 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+||.++..|++| .+||..|+++||+|++.+.++.
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHH
Confidence 688888888877 5899999999999999997543
No 393
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=30.16 E-value=2.4e+02 Score=27.01 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCcchHHHHHHcCCCeEEEec
Q 011531 117 SPTCVIADGILCFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 117 ~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~ 147 (483)
..|++|+. ..+ .+.+|..+|+|++.+..
T Consensus 254 ~a~l~I~~--DSg-p~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 254 GADAVVGV--DTG-LTHLAAALDKPTVTLYG 281 (319)
T ss_pred cCCEEEeC--CCh-HHHHHHHcCCCEEEEEC
Confidence 47999998 566 78899999999999864
No 394
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.08 E-value=2.3e+02 Score=24.34 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=61.1
Q ss_pred eccCHHHH-hccCCccceeeccC---chhHHHHHHhCCceeccccc-cchhHHHHHHHHhhccceecC-CCCCHHHHHHH
Q 011531 359 SWAPQEEV-LAHPAVGGFLTHGG---WNSTLEGIAAGVPMICWPQF-SDQLVNSRCVSEVWKIGFDMK-DTCDGSIIEKL 432 (483)
Q Consensus 359 ~~~p~~~l-l~~~~~~~~ItHgG---~gs~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~G~G~~l~-~~~~~~~l~~~ 432 (483)
+--+|..| -+||++..-+--.| .-|+.|.-.+|+=.+.=--+ -=+..|++.. +++|.=..+- +..+.+.|.++
T Consensus 61 ~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVkg~~k~~Il~a 139 (176)
T COG3195 61 SEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVKGNTKDTILAA 139 (176)
T ss_pred CHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeecCCCHHHHHHH
Confidence 33345443 45888732222222 34777778887654421111 1256789999 5699988887 78889999888
Q ss_pred HHHHHh-HhHHHHHHHHHHHHHHHH
Q 011531 433 VRDLME-NKREEIMGSTDRVATMAR 456 (483)
Q Consensus 433 i~~ll~-~~~~~~~~~a~~l~~~~~ 456 (483)
..+=|. ++..+++..+.++....+
T Consensus 140 ~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 140 FERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHH
Confidence 887777 444667777777665543
No 395
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.93 E-value=5.2e+02 Score=27.38 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred ccccccccCCCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEec
Q 011531 281 SCMTWLNSQPPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSW 360 (483)
Q Consensus 281 ~l~~~l~~~~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~ 360 (483)
++-+|--.+....|++++||++.. .....++.|...|.. .-++ |-+++.-
T Consensus 491 ~~Gk~~i~~~G~~vail~~G~~~~----~al~vae~L~~~Gi~-~TVv-------------------------d~rfvkP 540 (627)
T COG1154 491 EIGKGELLKEGEKVAILAFGTMLP----EALKVAEKLNAYGIS-VTVV-------------------------DPRFVKP 540 (627)
T ss_pred cccceEEEecCCcEEEEecchhhH----HHHHHHHHHHhcCCC-cEEE-------------------------cCeecCC
Q ss_pred cCHH---HHhccCCccceee------ccCchhHHHH--HHhC--Cceecccc---ccchhHHHHHHHHhhccceecCCCC
Q 011531 361 APQE---EVLAHPAVGGFLT------HGGWNSTLEG--IAAG--VPMICWPQ---FSDQLVNSRCVSEVWKIGFDMKDTC 424 (483)
Q Consensus 361 ~p~~---~ll~~~~~~~~It------HgG~gs~~ea--l~~G--vP~l~~P~---~~DQ~~na~~v~~~~G~G~~l~~~~ 424 (483)
++.. .+.++.++ +|| +||.||-.-- ..+| +|++.+.+ +-||..-.....+ -.+
T Consensus 541 lD~~ll~~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~---------~gL 609 (627)
T COG1154 541 LDEALLLELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAE---------LGL 609 (627)
T ss_pred CCHHHHHHHHhhcCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHH---------cCC
Q ss_pred CHHHHHHHHHHHH
Q 011531 425 DGSIIEKLVRDLM 437 (483)
Q Consensus 425 ~~~~l~~~i~~ll 437 (483)
+++.|.+.|...+
T Consensus 610 d~~~i~~~i~~~l 622 (627)
T COG1154 610 DAEGIARRILEWL 622 (627)
T ss_pred CHHHHHHHHHHHH
No 396
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=29.69 E-value=1.2e+02 Score=26.17 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCeEEEEecCcccCCCHHHHHHHHHHHHhCC
Q 011531 291 PKSVLYVSFGSLVGLTREQMSELWHGLVNRG 321 (483)
Q Consensus 291 ~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~ 321 (483)
.+..+|+++||........+...+..++..+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 3446999999998767777888888887643
No 397
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.46 E-value=6.1e+02 Score=29.31 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=33.1
Q ss_pred CCCCCCCCEEEEEcCCCC--CC----HHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 1 MERSHVNPHVVLLPYPLQ--GH----IKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 1 ~~~~~~~~~il~~~~~~~--GH----~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
|-...+-.||+++..|.. |+ =+...+++++|++.|++|+++.+.+
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 433445678988888753 43 2367789999999999999998743
No 398
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=29.23 E-value=91 Score=26.05 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEEEEc
Q 011531 290 PPKSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLLVVR 329 (483)
Q Consensus 290 ~~~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 329 (483)
....+|+|++||.-....+.++++++.+. .+.+++++..
T Consensus 49 ~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 49 KLRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 34568999999999888888899988885 3578777664
No 399
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=29.12 E-value=3.3e+02 Score=22.55 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=21.3
Q ss_pred CccEEEEcCCCCcchHHHHHHcCCCeEEE
Q 011531 117 SPTCVIADGILCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 117 ~~D~VI~D~~~~~~~~~~A~~lgIP~v~~ 145 (483)
+-++|++|... . ....|...|+++|.+
T Consensus 150 p~~~~~vgD~~-~-d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 150 PEEILFVGDSP-S-DVEAAKEAGIKTIWV 176 (176)
T ss_dssp GGGEEEEESSH-H-HHHHHHHTTSEEEEE
T ss_pred cceEEEEeCCH-H-HHHHHHHcCCeEEeC
Confidence 35788887665 5 799999999999864
No 400
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.11 E-value=3.8e+02 Score=26.81 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHh----CCcEEEEEeCCCchh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGS----ANFQVTFVNTDHNHD 48 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~----rGH~V~~~~~~~~~~ 48 (483)
..|+++...+-|-..-...||..|.. +|+.|.+++.+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 45667766788999999999998874 589999999987643
No 401
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=29.01 E-value=1.2e+02 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCccEEEEcCC--CCcchHHHHHHcCCCeEEE
Q 011531 116 QSPTCVIADGI--LCFLTLDVSEELQIPLLAL 145 (483)
Q Consensus 116 ~~~D~VI~D~~--~~~~~~~~A~~lgIP~v~~ 145 (483)
.++|.|++=.. ... |..+|.++|+|++.+
T Consensus 52 ~~id~Iv~iea~Gi~~-a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPL-AAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchh-HHHHHHHhCCCEEEE
Confidence 46999987654 345 899999999999997
No 402
>PRK08939 primosomal protein DnaI; Reviewed
Probab=28.99 E-value=73 Score=30.61 Aligned_cols=46 Identities=13% Similarity=-0.022 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLR 52 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~ 52 (483)
...+++...++.|-.+=+.+||.+|.++|..|+++..+.+...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 3568888888999999999999999999999999988766555543
No 403
>PRK03094 hypothetical protein; Provisional
Probab=28.92 E-value=51 Score=24.49 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCcEEEEEeC
Q 011531 24 MMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~ 43 (483)
+-.|.+.|+++||+|+=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999987765
No 404
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=28.83 E-value=3.7e+02 Score=22.94 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred ecCcccCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceee
Q 011531 298 SFGSLVGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLT 377 (483)
Q Consensus 298 s~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~It 377 (483)
-+||.. +.+..+++...|+.+|..+-..+ -+....|+.+.+-... ...-.+++||.
T Consensus 4 imGS~S--D~~~~~~a~~~L~~~gi~~dv~V--------~SaHRtp~~~~~~~~~--------------a~~~g~~viIa 59 (156)
T TIGR01162 4 IMGSDS--DLPTMKKAADILEEFGIPYELRV--------VSAHRTPELMLEYAKE--------------AEERGIKVIIA 59 (156)
T ss_pred EECcHh--hHHHHHHHHHHHHHcCCCeEEEE--------ECcccCHHHHHHHHHH--------------HHHCCCeEEEE
Confidence 345444 55667778888888777643222 1112344433321100 01112334887
Q ss_pred ccCchhHHHHHH---hCCceeccccccc--hhHHH--HHHHHhhcccee---cCCCCCHHHHHHHHHHHHhHhHHHHHHH
Q 011531 378 HGGWNSTLEGIA---AGVPMICWPQFSD--QLVNS--RCVSEVWKIGFD---MKDTCDGSIIEKLVRDLMENKREEIMGS 447 (483)
Q Consensus 378 HgG~gs~~eal~---~GvP~l~~P~~~D--Q~~na--~~v~~~~G~G~~---l~~~~~~~~l~~~i~~ll~~~~~~~~~~ 447 (483)
=+|...-+-.+. .-+|+|.+|.... ....+ ..++---|+.+. +++..+...++..|..+- + ++++++
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~-d--~~l~~k 136 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIK-D--PELAEK 136 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCC-C--HHHHHH
Confidence 777643333322 2468888887431 12222 233110242222 223444444444443332 4 788888
Q ss_pred HHHHHHHHHHH
Q 011531 448 TDRVATMARDA 458 (483)
Q Consensus 448 a~~l~~~~~~~ 458 (483)
.+.+++..+..
T Consensus 137 l~~~r~~~~~~ 147 (156)
T TIGR01162 137 LKEYRENQKEE 147 (156)
T ss_pred HHHHHHHHHHH
Confidence 88888777664
No 405
>PRK07206 hypothetical protein; Provisional
Probab=28.81 E-value=1.9e+02 Score=29.02 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
.+++++..... ...++++++++|++|++++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 36777665432 3568999999999999888743
No 406
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.64 E-value=1.3e+02 Score=22.16 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
+++...++-|-..-...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666778888889999999999999998776
No 407
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.53 E-value=1.7e+02 Score=27.06 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCC-cccCCCCHHHHHHHHHHhchHHHH
Q 011531 24 MMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPAN-VIRSGLTAKDVFDAMKAVSKPAFR 102 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 102 (483)
+-.+++.+.+.|-+|.+.+...+...+..... ...+-+..+|...+.. ..+..-.....+.+--.+..+.-+
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~-------~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~ 189 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADA-------HSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNK 189 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcc-------cceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHH
Confidence 44567777777777776666666666655432 1124444454211000 000000000000000011223336
Q ss_pred HHHHHhhhhhcCCCCccEEEEcCCCCc----chHHHHHHcCCCeEEEe
Q 011531 103 DLLISLREETEQRQSPTCVIADGILCF----LTLDVSEELQIPLLALR 146 (483)
Q Consensus 103 ~ll~~~~~~~~~~~~~D~VI~D~~~~~----~~~~~A~~lgIP~v~~~ 146 (483)
.++++ .+.|+||+-...-. .=..+|..+|||++++-
T Consensus 190 all~q--------~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 190 ALLEQ--------YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHH--------hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 77777 46999999754221 02469999999999973
No 408
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.49 E-value=4.8e+02 Score=24.57 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+.-+++|+...+.|-..-+..|+..+..+|+.|.+++.+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 346888888888899888999999999999999999987653
No 409
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.45 E-value=61 Score=29.54 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 20 HIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 20 H~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|+.-|..-|++|.++||+|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4567889999999999999999885
No 410
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=28.39 E-value=58 Score=31.48 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccc
Q 011531 4 SHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTD 55 (483)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~ 55 (483)
.+..++|.++.+|-.|.+ +|+.|.++||.|.+..-+. .+.+++..+
T Consensus 49 ~k~tl~IaIIGfGnmGqf-----lAetli~aGh~li~hsRsd-yssaa~~yg 94 (480)
T KOG2380|consen 49 WKATLVIAIIGFGNMGQF-----LAETLIDAGHGLICHSRSD-YSSAAEKYG 94 (480)
T ss_pred cccceEEEEEecCcHHHH-----HHHHHHhcCceeEecCcch-hHHHHHHhc
Confidence 455689999988877754 6999999999999887754 666666655
No 411
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=28.22 E-value=66 Score=32.12 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
.+||++.-.|+. ..+-...+.+.|.+.|++|.++.++.-.+
T Consensus 3 ~k~IllgiTGSi-aa~~~~~ll~~L~~~g~~V~vv~T~~A~~ 43 (390)
T TIGR00521 3 NKKILLGVTGGI-AAYKTVELVRELVRQGAEVKVIMTEAAKK 43 (390)
T ss_pred CCEEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHH
Confidence 567877777764 45668999999999999999999954433
No 412
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.20 E-value=5.2e+02 Score=24.51 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHh
Q 011531 311 SELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAA 390 (483)
Q Consensus 311 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~ 390 (483)
..+.+.++..+..+++.. |.-..+++.+.+..+.+ ++= -||++ .=.+.|.+.+..|+.+
T Consensus 155 ~~~~~~l~~~~~Dlivla--------gy~~il~~~~l~~~~~~-iiN----------iHpSL--LP~~rG~~~~~~ai~~ 213 (286)
T PRK13011 155 AQVLDVVEESGAELVVLA--------RYMQVLSPELCRKLAGR-AIN----------IHHSF--LPGFKGAKPYHQAYER 213 (286)
T ss_pred HHHHHHHHHhCcCEEEEe--------ChhhhCCHHHHhhccCC-eEE----------ecccc--CCCCCCCcHHHHHHHC
Confidence 346777777778888887 55456778777655443 221 13333 3345689999999999
Q ss_pred CCceecccccc--chhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 011531 391 GVPMICWPQFS--DQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVA 452 (483)
Q Consensus 391 GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~ 452 (483)
|+..-++-.+. +..+-+..+. .--+.+...-|.++|.+.+.++ +- .-|-+..+.+.
T Consensus 214 G~~~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~~~dt~~~L~~r~~~~-E~--~~~~~ai~~~~ 271 (286)
T PRK13011 214 GVKLIGATAHYVTDDLDEGPIIE---QDVERVDHAYSPEDLVAKGRDV-EC--LTLARAVKAHI 271 (286)
T ss_pred CCCeEEEEEEEEcCCCcCCCcEE---EEEEEcCCCCCHHHHHHHHHHH-HH--HHHHHHHHHHH
Confidence 99998887653 3333333332 3334444567899999998884 32 55666665554
No 413
>PRK00784 cobyric acid synthase; Provisional
Probab=28.12 E-value=5.6e+02 Score=26.47 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=27.5
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 10 VVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 10 il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|++... ..-|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 555544 4569999999999999999999987644
No 414
>PRK13236 nitrogenase reductase; Reviewed
Probab=28.05 E-value=1.1e+02 Score=29.05 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=31.9
Q ss_pred CCEE-EEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 7 NPHV-VLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 7 ~~~i-l~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
.+|+ .|..=|+-|-..-...||-.|+++|++|.++--+.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 3444 55555899999999999999999999999996543
No 415
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.03 E-value=5e+02 Score=24.72 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCchhHHHHHHh
Q 011531 311 SELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWNSTLEGIAA 390 (483)
Q Consensus 311 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~gs~~eal~~ 390 (483)
..+++.++..+..+++.. |.-..+++.+.+..+.+ ++=. |..+| |. ..|.+.+..|+.+
T Consensus 159 ~~~~~~l~~~~~Dlivla--------gym~il~~~~l~~~~~~-iiNi----HpSlL--P~------f~G~~~~~~ai~~ 217 (289)
T PRK13010 159 AQILDLIETSGAELVVLA--------RYMQVLSDDLSRKLSGR-AINI----HHSFL--PG------FKGARPYHQAHAR 217 (289)
T ss_pred HHHHHHHHHhCCCEEEEe--------hhhhhCCHHHHhhccCC-ceee----CcccC--CC------CCCCCHHHHHHHc
Confidence 346777887788888887 44446777776654443 2211 22333 33 4689999999999
Q ss_pred CCceecccccc--chhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 011531 391 GVPMICWPQFS--DQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVA 452 (483)
Q Consensus 391 GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~ 452 (483)
|+...++-.+. +..+.+..+. .--+.+...-|.+.|.+.+.++-. .-|-+..+.+.
T Consensus 218 G~k~tG~TvH~v~~~lD~GpII~---Q~~v~V~~~dt~e~L~~r~~~~E~---~~l~~ai~~~~ 275 (289)
T PRK13010 218 GVKLIGATAHFVTDDLDEGPIIE---QDVERVDHSYSPEDLVAKGRDVEC---LTLARAVKAFI 275 (289)
T ss_pred CCCeEEEEEEEEcCCCCCCCceE---EEEEEcCCCCCHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 99998888653 3444444442 333444445688999988888644 45665555543
No 416
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=27.90 E-value=1.9e+02 Score=19.30 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 442 EEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 442 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
+.-.++++++.+.+.. |=|+..++....+.|+..+
T Consensus 11 eeQQ~AvE~Iq~LMaq----GmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 11 EEQQQAVERIQELMAQ----GMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHH
Confidence 3445667777766655 7777778877777777654
No 417
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=27.87 E-value=1.1e+02 Score=22.63 Aligned_cols=51 Identities=14% Similarity=0.314 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 425 DGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
..+.|+++|+ +|++ . ..+.+.|++.+....+.|.+..-+.+++++..+..+
T Consensus 29 ~SEvvR~aLR-lle~--~--e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~~~ 79 (80)
T PF03693_consen 29 ASEVVREALR-LLEE--R--EAKLEALREALQEGLESGESEPFDMDDILARARRKH 79 (80)
T ss_dssp HHHHHHHHHH-HHHH--H--HHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH--
T ss_pred HHHHHHHHHH-HHHH--H--HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhhc
Confidence 4466666676 4443 1 235567888888776656655567888887765443
No 418
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=27.81 E-value=1.2e+02 Score=26.06 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=19.8
Q ss_pred HHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 406 NSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 406 na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
.+..- +.-|+|+.+ |+|+|.++|.+++++
T Consensus 104 ~~~Fe-~~cGVGV~V----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 104 VAEFE-KACGVGVVV----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp HHHHH-HTTTTT--------HHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCeEE----CHHHHHHHHHHHHHH
Confidence 34444 457999988 999999999999984
No 419
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=27.63 E-value=2.9e+02 Score=24.40 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=42.1
Q ss_pred eccccccchhHHHHHHHHhhccceecC-------------CCCCHHHHH----HHHHHHHhHhHHHHHHHHHHHHHHHH
Q 011531 395 ICWPQFSDQLVNSRCVSEVWKIGFDMK-------------DTCDGSIIE----KLVRDLMENKREEIMGSTDRVATMAR 456 (483)
Q Consensus 395 l~~P~~~DQ~~na~~v~~~~G~G~~l~-------------~~~~~~~l~----~~i~~ll~~~~~~~~~~a~~l~~~~~ 456 (483)
-+.|..-||..--..+-|.+.+|+.-. ..++.+.++ +.|.++|.| +.+-+|-.++.+.+.
T Consensus 21 WG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d--~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 21 WGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQD--AGIIRHRGKIQAIIG 97 (187)
T ss_pred CCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC--chhHHhHHHHHHHHH
Confidence 456778899988877767788888742 267777776 668888887 666555555555444
No 420
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=27.60 E-value=1.3e+02 Score=28.56 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=54.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCch
Q 011531 303 VGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWN 382 (483)
Q Consensus 303 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~g 382 (483)
+..+.+..+.+.+|+.+...+.||..+. +. +- .++.++++...+-++|.+ ||-+.-..
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rG-------G~------------ga-~rlL~~ld~~~~~~~pK~--~iGySDiT 101 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARG-------GY------------GA-NRLLPYLDYDLIRANPKI--FVGYSDIT 101 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCC-------cC------------CH-HHhhhhCCHHHHhhCCeE--EEEecHHH
Confidence 3455667788999999999999999863 21 11 556677777777777877 88888777
Q ss_pred hHHHHHHh--CCceeccccc
Q 011531 383 STLEGIAA--GVPMICWPQF 400 (483)
Q Consensus 383 s~~eal~~--GvP~l~~P~~ 400 (483)
+++-+++. |++.+-=|..
T Consensus 102 aL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 102 ALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHHHHhcCceEEECccc
Confidence 78877764 6766666643
No 421
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.55 E-value=81 Score=30.55 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
..|||.|+..|..| ..+|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 36899999887765 57899999999999999874
No 422
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.48 E-value=3.9e+02 Score=24.05 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCCCCHHHHH---HHHHHHHhCCcEEEEEeCC-CchhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHH
Q 011531 16 PLQGHIKPMM---SLAELLGSANFQVTFVNTD-HNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFD 91 (483)
Q Consensus 16 ~~~GH~~p~l---~La~~L~~rGH~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~ 91 (483)
+-.||+.+++ .+++-|+.+|++|.+++.- ..-.++.... .....+..++.+
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A-------------------------~~~g~~p~e~~~ 88 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRA-------------------------REEGLSWKEVAD 88 (213)
T ss_pred cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHH-------------------------HHcCCCHHHHHH
Confidence 4559998865 3577788899999998752 2322332221 112334444544
Q ss_pred HHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEE
Q 011531 92 AMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLA 144 (483)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~ 144 (483)
.+. ..+++.++.+.= ..||..+-. =...|++++...+|-|+=+
T Consensus 89 ~~~----~~f~~~~~~l~i-----~~~d~~~rt-Wh~ec~am~~~~lg~~~di 131 (213)
T cd00672 89 YYT----KEFFEDMKALNV-----LPPDVVPRV-WHIECSAMAMKYLGETFDI 131 (213)
T ss_pred HHH----HHHHHHHHHcCC-----CCCCcceee-hhHHHHHHHHHHcCCCccE
Confidence 444 345555665541 123655544 1223377777788866544
No 423
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.45 E-value=4.9e+02 Score=25.64 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=21.4
Q ss_pred EEEEcCC---CCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 10 VVLLPYP---LQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 10 il~~~~~---~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|+-.|.. +.+..--.+.+.+...++|....++..
T Consensus 163 ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~ 199 (356)
T PRK08334 163 VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVD 199 (356)
T ss_pred EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEEC
Confidence 5555542 223445567777788888888776665
No 424
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=27.40 E-value=1.3e+02 Score=28.05 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhc
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRN 53 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~ 53 (483)
.--+++...|+.|...-.++.+...+++|..|.+++.......+.+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 45567888899999999999999999999999999998776666554
No 425
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=1.2e+02 Score=25.68 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=41.3
Q ss_pred CEEEEEcCC-------CCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCC
Q 011531 8 PHVVLLPYP-------LQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPS 73 (483)
Q Consensus 8 ~~il~~~~~-------~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~ 73 (483)
.|++++..| +..|+--++.=+++|+++|.+++++.+ -+-..+.++.+ +.+.....++|..-|.
T Consensus 44 KKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS-VnDpFv~~aW~--k~~g~~~~V~f~aD~~ 113 (171)
T KOG0541|consen 44 KKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS-VNDPFVMKAWA--KSLGANDHVKFVADPA 113 (171)
T ss_pred ceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe-cCcHHHHHHHH--hhcCccceEEEEecCC
Confidence 466665543 568999999999999999999887776 34333433332 2222333578877663
No 426
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=27.25 E-value=1.3e+02 Score=30.75 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=32.8
Q ss_pred CEEEEEcCC---CCCCHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 011531 8 PHVVLLPYP---LQGHIKPMMSLAELLGSANFQVTFVNTDHNH 47 (483)
Q Consensus 8 ~~il~~~~~---~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~ 47 (483)
+|++|++.| +.|-=.-...|+..|.+||++|+.+--+++.
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYl 43 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYL 43 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccce
Confidence 477888887 5566678889999999999999999876653
No 427
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=26.68 E-value=5.1e+02 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
++|+++..-+-| ..||+.|.++|+.|++.+..
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat 34 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAG 34 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEcc
Confidence 466776655554 47899999999988876653
No 428
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=26.36 E-value=95 Score=27.29 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||.++. .||+ -+.+|-.|+++||+|+.+-.+
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 5677763 3444 478899999999999988664
No 429
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=26.29 E-value=32 Score=35.16 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=38.3
Q ss_pred hHHHHHHhCCceeccccccchhHHHHHHHHhhccceecCCCCCHH---HHHHHHHHHHhHhHHHHHHHH
Q 011531 383 STLEGIAAGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGS---IIEKLVRDLMENKREEIMGST 448 (483)
Q Consensus 383 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~---~l~~~i~~ll~~~~~~~~~~a 448 (483)
++.||+++|+|++.+=-.+ -+..++. .--|..++. +++ .+++++.++..| ++++.+.
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~EiV~~-~~tG~l~dp--~~e~~~~~a~~~~kl~~~--p~l~~~~ 440 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEIVVH-GVTGLLIDP--GQEAVAELADALLKLRRD--PELWARM 440 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEEEEc-CCcceeeCC--chHHHHHHHHHHHHHhcC--HHHHHHH
Confidence 7899999999999875433 2223322 344555543 444 699999999988 7765544
No 430
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=26.11 E-value=1.2e+02 Score=31.92 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=48.1
Q ss_pred cCcccCCCH-HHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEe--------ccCHHHHhcc
Q 011531 299 FGSLVGLTR-EQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVS--------WAPQEEVLAH 369 (483)
Q Consensus 299 ~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~ll~~ 369 (483)
.||...... ..-+.+++.|+..|.+.++-+...... .+-+.+.+ ..+ +.++. ++-.-.-..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~------~l~dal~~--~~~-i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAIL------PLYDALSQ--STQ-IRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccH------HHHHHHhc--cCC-ceEEEeccHHHHHHHHHHHHHHc
Confidence 344443332 335668888888888888776422110 11122211 112 33321 1111111112
Q ss_pred CCccceeeccCch------hHHHHHHhCCceeccc
Q 011531 370 PAVGGFLTHGGWN------STLEGIAAGVPMICWP 398 (483)
Q Consensus 370 ~~~~~~ItHgG~g------s~~eal~~GvP~l~~P 398 (483)
....++++|.|-| .+.+|...++|+|++.
T Consensus 75 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 2334488887754 7899999999999985
No 431
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=26.05 E-value=2.5e+02 Score=21.60 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 401 SDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 401 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
.|+.-|.... ++.|.+.+ ..+++.++.+.+.++++-.| .=.+.+=..+... | +++++|++.|+.|.
T Consensus 20 ~~~~gWr~LA-e~lg~~~~--fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~r---g----~Tv~~Ll~~L~~Mg 85 (97)
T cd08783 20 ADGKGWRKLA-ELAGSRGR--FRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGER---G----CTVTELSEFLQAME 85 (97)
T ss_pred CccCCHHHHH-HHHccCCc--cccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHc---C----CcHHHHHHHHHHhh
Confidence 3455566666 55666664 45899999999999998322 2334444445443 3 47889999888876
Q ss_pred h
Q 011531 481 R 481 (483)
Q Consensus 481 ~ 481 (483)
+
T Consensus 86 h 86 (97)
T cd08783 86 H 86 (97)
T ss_pred h
Confidence 5
No 432
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=26.05 E-value=5.4e+02 Score=29.69 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCC--CC----HHHHHHHHHHHHhCCcEEEEEeCCC
Q 011531 6 VNPHVVLLPYPLQ--GH----IKPMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 6 ~~~~il~~~~~~~--GH----~~p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
++.||+++..+.. |. =+-.+.++++|++.||+|.++...+
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~np 598 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNP 598 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 4578988887653 43 2456889999999999999987743
No 433
>PLN00016 RNA-binding protein; Provisional
Probab=26.02 E-value=88 Score=30.98 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 7 NPHVVLLPY--PLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 7 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
+++|+++.. |+.|.+ -..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 356777622 333333 456789999999999988864
No 434
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=26.00 E-value=61 Score=31.54 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||+|+..|..| ..+|..|+++||+|+++..+
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 689998887765 56789999999999999864
No 435
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=25.99 E-value=5.1e+02 Score=23.68 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 10 VVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 10 il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|+++..|+.|--.-...|++.|...|.+|.++..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 67888899999999999999999999999888664
No 436
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=25.81 E-value=1.5e+02 Score=23.92 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=27.1
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 11 VLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 11 l~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
+++..|..++-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4555566666777999999999999999988654
No 437
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.80 E-value=1.8e+02 Score=24.95 Aligned_cols=34 Identities=3% Similarity=-0.003 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEEeCCC-chhhhhhc
Q 011531 17 LQGHIKPMMSLAELLGSANFQVTFVNTDH-NHDLLLRN 53 (483)
Q Consensus 17 ~~GH~~p~l~La~~L~~rGH~V~~~~~~~-~~~~~~~~ 53 (483)
+-|++. .|+++|+++|.+|..++.+. ....+...
T Consensus 114 gD~DF~---~Lv~~lre~G~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 114 RDADFL---PVINKAKENGKETIVIGAEPGFSTALQNS 148 (160)
T ss_pred ccHhHH---HHHHHHHHCCCEEEEEeCCCCChHHHHHh
Confidence 446655 46788999999999999654 33355444
No 438
>PRK13059 putative lipid kinase; Reviewed
Probab=25.79 E-value=2.6e+02 Score=26.61 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred cceeeccCchhHHHHH---H---hCCceecccc
Q 011531 373 GGFLTHGGWNSTLEGI---A---AGVPMICWPQ 399 (483)
Q Consensus 373 ~~~ItHgG~gs~~eal---~---~GvP~l~~P~ 399 (483)
+.+|.-||=||+.|.+ . .++|+-++|.
T Consensus 58 d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 58 KYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 4599999999988874 2 3589999997
No 439
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=25.72 E-value=76 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=25.4
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEE
Q 011531 10 VVLLPY-PLQGHIKPMMSLAELLGSANFQVTFV 41 (483)
Q Consensus 10 il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~ 41 (483)
|++... .+.|-..-.+.|.+.|++||++|--+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 444433 46699999999999999999999754
No 440
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.64 E-value=2.3e+02 Score=24.21 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=37.0
Q ss_pred hccceecC--CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 011531 414 WKIGFDMK--DTCDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLM 479 (483)
Q Consensus 414 ~G~G~~l~--~~~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~ 479 (483)
+.+.+.+. +.|+++.+++.|-++-.= =+.|.....+.-.+ +| ..+++++|++|...
T Consensus 93 l~V~L~f~smdDFsP~~Va~qVp~L~kL--LeaR~~L~~L~~~l------dg--~~~~e~~l~~lL~n 150 (169)
T COG3516 93 LAVDLTFESMDDFSPDAVARQVPELKKL--LEARTALADLKGPL------DG--NPAFEELLQDLLKN 150 (169)
T ss_pred eeeeeeecccccCCHHHHHHhhHHHHHH--HHHHHHHHHHhccc------cC--cHHHHHHHHHHHcC
Confidence 67777777 789999999887766321 12455555554444 55 46788888877654
No 441
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.56 E-value=2.5e+02 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=32.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHH-HhCCcEEEEEeCCCch
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELL-GSANFQVTFVNTDHNH 47 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L-~~rGH~V~~~~~~~~~ 47 (483)
.-++|+..++-|-..-...||..+ ..+|++|.+++.+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 346667667889999999999876 6789999999987653
No 442
>PRK06988 putative formyltransferase; Provisional
Probab=25.53 E-value=6.1e+02 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 7999986654 3456677888899998877664
No 443
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=25.44 E-value=1.3e+02 Score=27.76 Aligned_cols=39 Identities=13% Similarity=-0.067 Sum_probs=28.4
Q ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 4 SHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
....++++++.-.---=..-+-.....|+++||+|++++
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~ 45 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVC 45 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEE
Confidence 345577766655544455667777888899999999987
No 444
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=25.44 E-value=1.4e+02 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=28.7
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 11 VLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 11 l~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
.++..+..--++|..-++...++.|++|+++-+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 344557888899999999999999999999988
No 445
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.42 E-value=4.5e+02 Score=22.86 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCc-hhhhhhccccccccCCCCCeEEEeCCCCCCCCcccCCCCHHHHHHHHHHhchHHHH
Q 011531 24 MMSLAELLGSANFQVTFVNTDHN-HDLLLRNTDITSFCNRFPNFQFRSIPSGLPANVIRSGLTAKDVFDAMKAVSKPAFR 102 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (483)
+..|.+...++|+.|.+++..+- .+++.+... ..+|++++......+.+ ..-.
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~-----~~yP~l~i~g~~g~f~~---------------------~~~~ 90 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLI-----KEYPKLKIVGAFGPLEP---------------------EERK 90 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHH-----HHCCCCEEEEECCCCCh---------------------HHHH
Confidence 45566666678999999987543 233333222 34567776655221110 0112
Q ss_pred HHHHHhhhhhcCCCCccEEEEcCCCC----cchHHHHHHcCCCeEE
Q 011531 103 DLLISLREETEQRQSPTCVIADGILC----FLTLDVSEELQIPLLA 144 (483)
Q Consensus 103 ~ll~~~~~~~~~~~~~D~VI~D~~~~----~~~~~~A~~lgIP~v~ 144 (483)
++++.+++ .+||+|++-...+ | .......++.+++.
T Consensus 91 ~i~~~I~~-----s~~dil~VglG~PkQE~~-~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 91 AALAKIAR-----SGAGIVFVGLGCPKQEIW-MRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHHHH-----cCCCEEEEEcCCcHhHHH-HHHhHHhCCCcEEE
Confidence 34555544 5799999998876 4 44444555555444
No 446
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.39 E-value=1e+02 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.000 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVN 42 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~ 42 (483)
-+.+++++..++. --..+|+.|.+.||+|++..
T Consensus 26 l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 26 LEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEc
Confidence 3457888888864 44678999999999999543
No 447
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.36 E-value=1.2e+02 Score=27.76 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
.+.+++++... .|.+ -..+++.|.++||+|+++...
T Consensus 9 ~~~~~vlItGa--~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVTGG--ASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred cCCCEEEEeCC--CCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 34556655533 3544 477899999999999877753
No 448
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=69 Score=32.79 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||+++..|-- -++-|.+|+++||+||++=..
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEecc
Confidence 46777666543 378899999999999998653
No 449
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.04 E-value=1.1e+02 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
..+++++..|..| ...++.|.+.|++|+++++ ...+.+
T Consensus 10 ~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~-~~~~~l 47 (202)
T PRK06718 10 NKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISP-ELTENL 47 (202)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcC-CCCHHH
Confidence 4678888776543 5678999999999999986 444443
No 450
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.94 E-value=1.2e+02 Score=26.37 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=20.5
Q ss_pred CCccEEEEcCCCCcc-hHHHHHHcCCCeEEEe
Q 011531 116 QSPTCVIADGILCFL-TLDVSEELQIPLLALR 146 (483)
Q Consensus 116 ~~~D~VI~D~~~~~~-~~~~A~~lgIP~v~~~ 146 (483)
.+||+||........ ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 479999987543320 2223467899998874
No 451
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.94 E-value=1.9e+02 Score=26.58 Aligned_cols=72 Identities=11% Similarity=0.223 Sum_probs=39.3
Q ss_pred cCHHHHhc-cCCccceeeccCchh--HHHHHH--hCCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHH
Q 011531 361 APQEEVLA-HPAVGGFLTHGGWNS--TLEGIA--AGVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRD 435 (483)
Q Consensus 361 ~p~~~ll~-~~~~~~~ItHgG~gs--~~eal~--~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ 435 (483)
...+.|++ +|++ +|...+.+. ..+.+. .|+|++.++.......+...+ + -+|..+...-..+.+.+.+++
T Consensus 65 ~n~E~i~~l~PDL--Ii~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i-~--~lg~~~g~~~~a~~~~~~~~~ 139 (262)
T cd01147 65 PNYEKIAALKPDV--VIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQI-R--LLGKVLGKEERAEELISFIES 139 (262)
T ss_pred CCHHHHHhcCCCE--EEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHH-H--HHHHHhCCHHHHHHHHHHHHH
Confidence 34566655 7888 777655544 556553 899999998653233333344 2 444445432333444444333
Q ss_pred HH
Q 011531 436 LM 437 (483)
Q Consensus 436 ll 437 (483)
-+
T Consensus 140 ~~ 141 (262)
T cd01147 140 IL 141 (262)
T ss_pred HH
Confidence 33
No 452
>PRK08181 transposase; Validated
Probab=24.90 E-value=88 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
++-+++|+..++.|-..=..+++.++.++|+.|.+++.+.....+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 345688888888888888889999999999999988875444333
No 453
>PRK05541 adenylylsulfate kinase; Provisional
Probab=24.87 E-value=1.7e+02 Score=25.03 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=37.4
Q ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 1 MERSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 1 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
|+..+++.-|+|...++.|--.-...|++.|..+|..+.++..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 7788888899999999999999999999999988888877754
No 454
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.69 E-value=1e+02 Score=29.24 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
+||.|+..|.-| .++|..|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 467777776544 68899999999999998864
No 455
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.63 E-value=3e+02 Score=25.99 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred cceeeccCchhHHHHHHh-----CCcee-cccc
Q 011531 373 GGFLTHGGWNSTLEGIAA-----GVPMI-CWPQ 399 (483)
Q Consensus 373 ~~~ItHgG~gs~~eal~~-----GvP~l-~~P~ 399 (483)
+.+|.-||=||+.|++.. ..|.+ ++|.
T Consensus 59 d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 59 DTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 349999999999997643 34444 4896
No 456
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.59 E-value=1.1e+02 Score=24.69 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
+..+++++++|+. +...+..++.|.++|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 4567888888775 56779999999999999998875
No 457
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=24.55 E-value=86 Score=28.60 Aligned_cols=20 Identities=35% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCcEEEEEeC
Q 011531 24 MMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~ 43 (483)
-.+||++|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 46889999999999998753
No 458
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.34 E-value=94 Score=31.90 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLL 50 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~ 50 (483)
..||++...|+. -.+=...|+++|.++|++|.++.++.-.+.+
T Consensus 70 ~k~IllgVtGsI-Aayka~~lvr~L~k~G~~V~VvmT~sA~~fv 112 (475)
T PRK13982 70 SKRVTLIIGGGI-AAYKALDLIRRLKERGAHVRCVLTKAAQQFV 112 (475)
T ss_pred CCEEEEEEccHH-HHHHHHHHHHHHHhCcCEEEEEECcCHHHHh
Confidence 577877766653 3557889999999999999999996544333
No 459
>PRK11617 endonuclease V; Provisional
Probab=24.14 E-value=51 Score=29.93 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhhcCCCCccEEEEcCCCCc------chHHHHHHcCCCeEEE
Q 011531 99 PAFRDLLISLREETEQRQSPTCVIADGILCF------LTLDVSEELQIPLLAL 145 (483)
Q Consensus 99 ~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~------~~~~~A~~lgIP~v~~ 145 (483)
+.+.++++++. .+||+|++|..-.. +|..+.-.+++|+|.+
T Consensus 85 P~~l~al~~l~------~~PdlllvDG~G~~HPR~~GlA~HlGv~~~~PtIGV 131 (224)
T PRK11617 85 PALLAAWEQLS------QKPDLVFVDGHGIAHPRRLGVASHFGLLVDVPTIGV 131 (224)
T ss_pred HHHHHHHHhcC------cCCCEEEEcCceeECCCCcceeeEEEeecCCCEEEE
Confidence 44566677765 58999999987542 1222334456777775
No 460
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=24.11 E-value=1.8e+02 Score=29.56 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchh
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHD 48 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~ 48 (483)
+..|+++..++-|-..-...||..|.++|++|.+++.+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 456777777899999999999999999999999999876643
No 461
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.06 E-value=1.2e+02 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=19.1
Q ss_pred CeEEEEecCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 011531 292 KSVLYVSFGSLVGLTREQMSELWHGLVNRGQRFLL 326 (483)
Q Consensus 292 ~~vi~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 326 (483)
+.+++|+ |.... ....+..+...|+..+..+.+
T Consensus 24 ~r~livt-~~~~~-~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 24 KRPLIVT-DKVMV-KLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred CeEEEEc-Ccchh-hcchHHHHHHHHHHCCCeEEE
Confidence 4556666 43332 233566688888877766543
No 462
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.97 E-value=1.3e+02 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=25.7
Q ss_pred eEEEEecCcccCCCHHHHHHHHHHHHhC--CCeEEEEE
Q 011531 293 SVLYVSFGSLVGLTREQMSELWHGLVNR--GQRFLLVV 328 (483)
Q Consensus 293 ~vi~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~ 328 (483)
.+++++|||......+.+..+.+.++.. ++.+-|.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 6899999999875556677777777542 34566665
No 463
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.95 E-value=63 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCccceeeccCchhHHHHHH------hCCceecccc
Q 011531 370 PAVGGFLTHGGWNSTLEGIA------AGVPMICWPQ 399 (483)
Q Consensus 370 ~~~~~~ItHgG~gs~~eal~------~GvP~l~~P~ 399 (483)
+++ +|+-||-||++.|++ .++|++.+-.
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 454 999999999999986 4778887653
No 464
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.83 E-value=69 Score=23.84 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCcEEEEEeCCC
Q 011531 24 MMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 24 ~l~La~~L~~rGH~V~~~~~~~ 45 (483)
+-.+.+.|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887654
No 465
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=23.71 E-value=2.9e+02 Score=24.29 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcchHHHHHHcCCCeEEEec
Q 011531 119 TCVIADGILCFLTLDVSEELQIPLLALRT 147 (483)
Q Consensus 119 D~VI~D~~~~~~~~~~A~~lgIP~v~~~~ 147 (483)
++++++.. .. ...+|+..|++++.+..
T Consensus 160 ~~~~igDs-~~-d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 160 QMVYVGDS-RV-DIQAARAAGCPSVLLTY 186 (213)
T ss_pred HeEEeCCC-HH-HHHHHHHCCCeEEEEcc
Confidence 46555544 45 78999999999998743
No 466
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.50 E-value=1.2e+02 Score=21.96 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCC
Q 011531 23 PMMSLAELLGSANFQVTFVNTDH 45 (483)
Q Consensus 23 p~l~La~~L~~rGH~V~~~~~~~ 45 (483)
--+.+|..|++.|.+|+++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999998743
No 467
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.41 E-value=35 Score=32.19 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=32.5
Q ss_pred ccCchhH--HHHHHhCCceeccccccchhHHHHH-HHHhhccceec
Q 011531 378 HGGWNST--LEGIAAGVPMICWPQFSDQLVNSRC-VSEVWKIGFDM 420 (483)
Q Consensus 378 HgG~gs~--~eal~~GvP~l~~P~~~DQ~~na~~-v~~~~G~G~~l 420 (483)
=||||++ .-|-.+||-++.+-+...|..+++. +. ..|+...+
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~-~~gl~~~v 124 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIA-ARGLEDNV 124 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHH-HcCCCccc
Confidence 4677754 5567779999999999999999975 64 47888333
No 468
>PLN02929 NADH kinase
Probab=23.35 E-value=1.3e+02 Score=28.85 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCccceeeccCchhHHHHHHh---CCceeccccccc------hhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 370 PAVGGFLTHGGWNSTLEGIAA---GVPMICWPQFSD------QLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 370 ~~~~~~ItHgG~gs~~eal~~---GvP~l~~P~~~D------Q~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
+++ +|+-||-||++.|.+. ++|++.+-.... +..|.-- +..-+|... .++.+++.+++.+++++
T Consensus 65 ~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL~--~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 65 VDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHLC--AATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCccccc--cCCHHHHHHHHHHHHcC
Confidence 455 9999999999998654 688888765321 1222100 111233332 35688899999999974
No 469
>PRK10037 cell division protein; Provisional
Probab=23.33 E-value=1.2e+02 Score=28.03 Aligned_cols=37 Identities=16% Similarity=-0.022 Sum_probs=30.5
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 10 VVLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 10 il~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
|.+... |+-|-..-...||..|+++|++|.++=.+..
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 455555 7889999999999999999999999965443
No 470
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.28 E-value=1.4e+02 Score=30.01 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCEE-EEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 7 NPHV-VLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 7 ~~~i-l~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
++++ .|+.. |+-|-..-.+.||..|+.+|++|.++=.++.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3454 44444 8889999999999999999999999966543
No 471
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=23.26 E-value=3.2e+02 Score=30.84 Aligned_cols=106 Identities=9% Similarity=0.058 Sum_probs=62.2
Q ss_pred eccCHH---HHhccCCccceee---ccCchh-HHHHHHhCC---ceeccccccchhHHHHHHHHhhc-cceecCCCCCHH
Q 011531 359 SWAPQE---EVLAHPAVGGFLT---HGGWNS-TLEGIAAGV---PMICWPQFSDQLVNSRCVSEVWK-IGFDMKDTCDGS 427 (483)
Q Consensus 359 ~~~p~~---~ll~~~~~~~~It---HgG~gs-~~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~ 427 (483)
..+|+. .++..++| ++- .-|+|- ..|+++++. -++++.-++- .. +.+| -++.+ +..+.+
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaG------aa-~~L~~~AllV-NP~D~~ 515 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAG------AA-QSLGAGAILV-NPWNIT 515 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCc------hH-HHhCCceEEE-CCCCHH
Confidence 446654 45666776 443 448774 559999965 2233333221 11 1133 34555 568999
Q ss_pred HHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Q 011531 428 IIEKLVRDLME-NKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMA 480 (483)
Q Consensus 428 ~l~~~i~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~ 480 (483)
.++++|.++|+ +. ++-+++.+++.+.++. -....-++.++.+|....
T Consensus 516 ~vA~AI~~AL~M~~-~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 516 EVAASIAQALNMPE-EEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHHH
Confidence 99999999998 31 3344455555555543 244555788888887654
No 472
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.14 E-value=1.5e+02 Score=28.52 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=35.6
Q ss_pred ccceeeccCchhHHHHHHh----CCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHh
Q 011531 372 VGGFLTHGGWNSTLEGIAA----GVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLME 438 (483)
Q Consensus 372 ~~~~ItHgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~ 438 (483)
++++|+=||-||++.|++. ++|++.+.... +|.. .....+++.+++.++++
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G~--------------lGFL--~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLGH--------------VGFL--AEAEAEDLDEAVERVVD 127 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecCC--------------Ccee--ccCCHHHHHHHHHHHHc
Confidence 3449999999999999774 77888776511 1221 23566777788888877
No 473
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=23.13 E-value=1.8e+02 Score=21.81 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhh
Q 011531 425 DGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIEDIRLMAR 481 (483)
Q Consensus 425 ~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~l~~~~~ 481 (483)
..+.|.+.+++-|.+ ...++..+.+....-+ ++|...-+++++++++.-.++
T Consensus 15 e~~~L~~~L~~rL~e--~GW~d~vr~~~re~i~---~~g~~~~~~~~l~~~i~P~Ar 66 (86)
T PF10163_consen 15 EYERLKELLRQRLIE--CGWRDEVRQLCREIIR---ERGIDNLTFEDLLEEITPKAR 66 (86)
T ss_dssp HHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHH---HH-TTTSBHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--CChHHHHHHHHHHHHH---hhCCCCCCHHHHHHHHHHHHH
Confidence 456677777776665 4455555555444433 255556688999988876654
No 474
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.07 E-value=1.4e+02 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
.|+|+.=|+-|-..-...||..|+++|++|.++=-+..
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 47777678999999999999999999999999976543
No 475
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=23.05 E-value=1.2e+02 Score=27.18 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCcEEEEEeCC
Q 011531 25 MSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 25 l~La~~L~~rGH~V~~~~~~ 44 (483)
..||++|++.||+|++.+..
T Consensus 14 ~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred HHHHHHHHhCCCeEEEecCC
Confidence 67899999999999998764
No 476
>PRK07236 hypothetical protein; Provisional
Probab=23.00 E-value=1.5e+02 Score=29.37 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 3 RSHVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
++.+.++|+++..|- --+.+|..|+++|++|+++=-
T Consensus 2 ~~~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 2 THMSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEec
Confidence 346678999988773 347899999999999998864
No 477
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.97 E-value=4.7e+02 Score=26.11 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCC-cEEEEEeCC-Cchhhhhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSAN-FQVTFVNTD-HNHDLLLR 52 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rG-H~V~~~~~~-~~~~~~~~ 52 (483)
++|+++.-|.-|+ .+|..|+++| ++|+++.-. ...+++..
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~ 43 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE 43 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh
Confidence 5777777766554 6899999999 999998864 34445544
No 478
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=22.96 E-value=1.1e+02 Score=30.81 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~ 44 (483)
|||.|+..|..| +.+|..|+++||+|+++...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 477787666544 68899999999999988653
No 479
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=22.92 E-value=96 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=26.7
Q ss_pred HHhccCCccceeecc---CchhHHHH---HHhCCceeccccccch
Q 011531 365 EVLAHPAVGGFLTHG---GWNSTLEG---IAAGVPMICWPQFSDQ 403 (483)
Q Consensus 365 ~ll~~~~~~~~ItHg---G~gs~~ea---l~~GvP~l~~P~~~DQ 403 (483)
..+..+++-.++-.+ +.||..|. .+.|+|++++-.-..+
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 345566665555555 89999996 7789999988654443
No 480
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=22.90 E-value=91 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=27.4
Q ss_pred CEEEEEcCCC---CCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPL---QGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~---~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+|+.|++.|. .|-=.-...|+..|.+||++|+++--+++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-S
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccc
Confidence 4778888774 45556688999999999999999987654
No 481
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=22.90 E-value=8.8e+02 Score=26.13 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEE-EEeC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVT-FVNT 43 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~-~~~~ 43 (483)
|||+|+..+.. ....-+.|.+.||+|. ++|.
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~~~~~i~~V~t~ 32 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLAAGYEIAAVFTH 32 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHHCCCcEEEEEeC
Confidence 68888864432 2444588888999998 4554
No 482
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=22.88 E-value=1.4e+02 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 5 HVNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 5 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
-.++.|-++|-.+++.+.|.-.+.+.|.+.-.++.++++.+.
T Consensus 44 ~g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 44 YGKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred CCceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 346899999999999999999999999999999999998554
No 483
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=22.85 E-value=1e+02 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEeC
Q 011531 22 KPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 22 ~p~l~La~~L~~rGH~V~~~~~ 43 (483)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7999999999999999887666
No 484
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.82 E-value=1.3e+02 Score=29.99 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCEEE-EEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 6 VNPHVV-LLPY-PLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il-~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
++++++ |... |+-|-..-...||..|+.+|++|.++=.+..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ 144 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ 144 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 345554 4433 7889999999999999999999999976543
No 485
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=22.73 E-value=1.3e+02 Score=26.05 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=61.9
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhhhhhccccccccCCCCCeEEEeCCCCCCCCc-ccCCCCHHHHH
Q 011531 12 LLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDLLLRNTDITSFCNRFPNFQFRSIPSGLPANV-IRSGLTAKDVF 90 (483)
Q Consensus 12 ~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~p~~l~~~~-~~~~~~~~~~~ 90 (483)
..+-|+-|-..-...||..|+++|++|.++-.+.......-... . -..+........ ...........
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFG----------V-YDILREGLENANAILKNFESQDIY 72 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTT----------C-HHHHTTSSHGHHCHHESCCHHHHH
T ss_pred EcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhc----------c-hhhccccceehhhhhhccchhhhh
Confidence 34447889999999999999999999999988654333322110 0 000000000000 00000111111
Q ss_pred HHHHHhchHHHHHHHHHhhhhhcCCCCccEEEEcCCCCcchHHHHHHcCCCeEEEecc
Q 011531 91 DAMKAVSKPAFRDLLISLREETEQRQSPTCVIADGILCFLTLDVSEELQIPLLALRTH 148 (483)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~D~VI~D~~~~~~~~~~A~~lgIP~v~~~~~ 148 (483)
..-.......++++++.+.+ ..+|+||.|..... ...+...+...-..+.+.
T Consensus 73 ~~~~~~~~~~l~~~l~~l~~-----~~yD~iiiD~~~~~-~~~~~~~l~~ad~viv~~ 124 (195)
T PF01656_consen 73 QGEEYLDPELLREILESLIK-----SDYDYIIIDTPPGL-SDPVRNALAAADYVIVPI 124 (195)
T ss_dssp HHCHCHHHHHHHHHHHHHHH-----TTSSEEEEEECSSS-SHHHHHHHHTSSEEEEEE
T ss_pred hhhhhhHHHHHHHHHHHhhh-----ccccceeecccccc-cHHHHHHHHhCceeeeec
Confidence 10000123346677777543 35999999976655 555555665665555443
No 486
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=22.71 E-value=79 Score=25.38 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 21 IKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 21 ~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+.|+..|.-.+.-+||+++++-+..+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY 34 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYY 34 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHH
Confidence 45667777777789999999998544
No 487
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.65 E-value=1.7e+02 Score=29.44 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCcEEEEEeCC
Q 011531 23 PMMSLAELLGSANFQVTFVNTD 44 (483)
Q Consensus 23 p~l~La~~L~~rGH~V~~~~~~ 44 (483)
--.++|++|.++|++|+++..+
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC
Confidence 3578999999999999998764
No 488
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.61 E-value=1.7e+02 Score=26.46 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 7 NPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 7 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
++|.++++.++ |. =-..|+++|.++|++|+++.-
T Consensus 5 ~~k~vlItG~s-g~--iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITGAS-SG--IGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 35556665543 32 346789999999999998775
No 489
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=22.51 E-value=3.6e+02 Score=25.78 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CcEEEEEeCCC
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSA--NFQVTFVNTDH 45 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~V~~~~~~~ 45 (483)
+||++...++. + ++++.|++. ||+|..+....
T Consensus 2 ~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred ceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCCC
Confidence 57888877543 2 789999998 59999887643
No 490
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=22.42 E-value=1.9e+02 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=36.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhh
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDL 49 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~ 49 (483)
.+|+++.-++.|--.-...++-+|++.||+|..++-++..+.
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDS 43 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADS 43 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 478999999999999999999999999999999986554443
No 491
>PRK07952 DNA replication protein DnaC; Validated
Probab=22.30 E-value=1.1e+02 Score=28.30 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCchhh
Q 011531 9 HVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHNHDL 49 (483)
Q Consensus 9 ~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~~~~ 49 (483)
-+++...++.|-..=..+||.+|.++|+.|.+++.......
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 57777778999999999999999999999999976444333
No 492
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=22.26 E-value=2.1e+02 Score=24.44 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=27.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011531 433 VRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNLDGLIE 474 (483)
Q Consensus 433 i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~ 474 (483)
+.+.+++--..+.+.+..++++++.. ||.+..+..++++
T Consensus 49 lHe~~ee~y~el~~~~DeiAERi~~L---Gg~p~~t~~~~~~ 87 (156)
T COG0783 49 LHEKLEELYEELAEHVDEIAERIRAL---GGVPLGTLSEYLK 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCcccHHHHHH
Confidence 33444433356788889999999888 8888877777665
No 493
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=22.15 E-value=74 Score=29.47 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCccceeeccCchhHHHHHHh----CCceecccc
Q 011531 370 PAVGGFLTHGGWNSTLEGIAA----GVPMICWPQ 399 (483)
Q Consensus 370 ~~~~~~ItHgG~gs~~eal~~----GvP~l~~P~ 399 (483)
+++ +|+-||=||++.+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 455 9999999999998765 578877654
No 494
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=22.04 E-value=2.7e+02 Score=26.17 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHH-----------HHHHHHHHHhhh
Q 011531 424 CDGSIIEKLVRDLMENKREEIMGSTDRVATMARDAVNEGGSSYRNL-----------DGLIEDIRLMAR 481 (483)
Q Consensus 424 ~~~~~l~~~i~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~-----------~~l~~~l~~~~~ 481 (483)
..+|.-++.=-+||.| |++|++.+.+-+++ -+|+ +.|||+|+..++
T Consensus 284 ~aee~trKRevRLmKN-----REAARECRRKKKEY-------VKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKN-----REAARECRRKKKEY-------VKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred cchhhhhHHHHHHHhh-----HHHHHHHHHhHhHH-------HHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 4455555666667776 56666666666554 2232 457888877654
No 495
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.03 E-value=1.9e+02 Score=27.64 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=36.2
Q ss_pred cceeeccCchhHHHHHHh----CCceeccccccchhHHHHHHHHhhccceecCCCCCHHHHHHHHHHHHhH
Q 011531 373 GGFLTHGGWNSTLEGIAA----GVPMICWPQFSDQLVNSRCVSEVWKIGFDMKDTCDGSIIEKLVRDLMEN 439 (483)
Q Consensus 373 ~~~ItHgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~~i~~ll~~ 439 (483)
+.+|+=||-||+.++++. ++|++.+... .+|. + ...+.+++.++|.+++++
T Consensus 64 d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF-l-~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 64 DLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF-L-TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc-c-ccCCHHHHHHHHHHHHcC
Confidence 349999999999999763 5677776651 1111 1 346778888888888873
No 496
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=21.93 E-value=1.6e+02 Score=29.32 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCEE-EEEcC-CCCCCHHHHHHHHHHHHhCCcEEEEEeC-CC
Q 011531 7 NPHV-VLLPY-PLQGHIKPMMSLAELLGSANFQVTFVNT-DH 45 (483)
Q Consensus 7 ~~~i-l~~~~-~~~GH~~p~l~La~~L~~rGH~V~~~~~-~~ 45 (483)
++++ .|+.. |+-|-..-...||..|+.+|++|.++=- ++
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~Dp 146 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP 146 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3455 45555 8889999999999999999999999963 44
No 497
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=21.91 E-value=3.2e+02 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 8 PHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 8 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
|||+++..+++-| +||+.|++.+---.++..+.|
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN 34 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN 34 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC
Confidence 7999999999999 589999987755544444443
No 498
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=21.90 E-value=2.7e+02 Score=27.27 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=30.6
Q ss_pred CCEEEEEcCC--CCCCHHHHHHHHHHHHhCCcEEEEEeC
Q 011531 7 NPHVVLLPYP--LQGHIKPMMSLAELLGSANFQVTFVNT 43 (483)
Q Consensus 7 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~V~~~~~ 43 (483)
.+||.+++.| ++|=-.-..+|.+.+..+|.+|.-+-.
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~ 40 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN 40 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4688888776 668888899999999999999987754
No 499
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=21.87 E-value=1.7e+02 Score=28.08 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEEcCCccCCCCCCCCCChhhhhhcCCCceeEEeccCHHHHhccCCccceeeccCch
Q 011531 303 VGLTREQMSELWHGLVNRGQRFLLVVRPDLILGEPGAAETPLAQNEGTEERNRFIVSWAPQEEVLAHPAVGGFLTHGGWN 382 (483)
Q Consensus 303 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHgG~g 382 (483)
+..+.+....+.+++.+...+.||.++. +. +- .++.++++...+-++|.+ ||-..-..
T Consensus 48 ag~~~~Ra~dL~~a~~Dp~i~aI~~~rG-------G~------------g~-~rlL~~lD~~~i~~~PK~--fiGySDiT 105 (308)
T cd07062 48 SASPEERAEELMAAFADPSIKAIIPTIG-------GD------------DS-NELLPYLDYELIKKNPKI--FIGYSDIT 105 (308)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEECCc-------cc------------CH-hhhhhhcCHHHHhhCCCE--EEeccHHH
Confidence 3345566788999999988899999862 21 11 566677777777778877 88887777
Q ss_pred hHHHHHH--hCCceeccccc
Q 011531 383 STLEGIA--AGVPMICWPQF 400 (483)
Q Consensus 383 s~~eal~--~GvP~l~~P~~ 400 (483)
+++-+++ .|++.+-=|..
T Consensus 106 aL~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 106 ALHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHHHHHhcCCeEEECccc
Confidence 7877774 36766555654
No 500
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=21.75 E-value=78 Score=27.18 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 011531 6 VNPHVVLLPYPLQGHIKPMMSLAELLGSANFQVTFVNTDHN 46 (483)
Q Consensus 6 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~V~~~~~~~~ 46 (483)
+..+|+++.++++||. -|.-|++.|++|++...+..
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 3578999999999885 57889999999998876543
Done!