Query 011532
Match_columns 483
No_of_seqs 288 out of 1662
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.5E-83 9.7E-88 648.5 19.8 307 23-344 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.8E-41 3.9E-46 328.0 23.2 252 19-336 42-305 (305)
3 smart00768 X8 Possibly involve 99.9 1.5E-27 3.2E-32 198.6 7.2 83 365-448 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 2.2E-21 4.9E-26 158.8 5.7 70 365-435 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.2 1.8E-10 3.8E-15 116.4 15.7 193 23-272 30-252 (314)
6 PF07745 Glyco_hydro_53: Glyco 98.9 4.6E-07 1E-11 93.4 22.1 245 37-343 26-330 (332)
7 COG3867 Arabinogalactan endo-1 98.3 1.3E-05 2.8E-10 80.4 14.6 221 37-311 65-341 (403)
8 PRK10150 beta-D-glucuronidase; 97.9 0.0016 3.4E-08 72.6 23.4 257 23-344 295-587 (604)
9 PF00150 Cellulase: Cellulase 97.8 0.0016 3.4E-08 64.2 18.9 131 22-155 10-172 (281)
10 smart00633 Glyco_10 Glycosyl h 97.4 0.022 4.8E-07 56.6 20.3 80 247-342 171-251 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.7 0.066 1.4E-06 52.9 15.7 66 259-337 166-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 96.5 0.3 6.4E-06 49.5 19.3 95 22-118 17-132 (298)
13 TIGR03356 BGL beta-galactosida 95.9 2 4.3E-05 46.2 22.5 74 256-337 335-414 (427)
14 PRK09936 hypothetical protein; 83.5 6.1 0.00013 40.4 8.8 62 19-80 18-96 (296)
15 PF02449 Glyco_hydro_42: Beta- 82.9 3.9 8.5E-05 42.9 7.6 82 37-120 12-140 (374)
16 PF00232 Glyco_hydro_1: Glycos 79.3 0.83 1.8E-05 49.4 1.1 79 38-120 61-169 (455)
17 cd02875 GH18_chitobiase Chitob 76.4 12 0.00026 39.3 8.7 103 48-155 55-158 (358)
18 PLN03059 beta-galactosidase; P 68.6 1E+02 0.0022 36.3 14.2 115 39-157 63-222 (840)
19 PLN02814 beta-glucosidase 67.8 14 0.00029 40.8 6.9 74 256-337 385-461 (504)
20 PRK13511 6-phospho-beta-galact 67.7 16 0.00035 39.8 7.4 78 37-119 56-162 (469)
21 PLN02998 beta-glucosidase 66.0 15 0.00033 40.4 6.8 78 38-119 85-192 (497)
22 PF03662 Glyco_hydro_79n: Glyc 62.7 16 0.00035 38.0 5.9 85 60-144 113-202 (319)
23 PLN02849 beta-glucosidase 60.0 20 0.00043 39.6 6.4 74 256-337 383-461 (503)
24 COG4782 Uncharacterized protei 59.9 26 0.00057 37.0 6.9 56 236-294 125-186 (377)
25 smart00481 POLIIIAc DNA polyme 54.6 38 0.00083 26.1 5.6 45 34-78 14-63 (67)
26 PF00925 GTP_cyclohydro2: GTP 52.6 17 0.00037 34.0 3.9 38 40-77 131-168 (169)
27 TIGR00505 ribA GTP cyclohydrol 48.8 25 0.00055 33.6 4.4 33 41-73 131-163 (191)
28 PRK00393 ribA GTP cyclohydrola 48.2 26 0.00056 33.7 4.4 33 41-73 134-166 (197)
29 PF14488 DUF4434: Domain of un 43.5 42 0.0009 31.4 4.9 20 60-79 69-88 (166)
30 COG3934 Endo-beta-mannanase [C 42.7 2.3E+02 0.0051 31.3 10.7 187 91-343 123-313 (587)
31 PRK09589 celA 6-phospho-beta-g 42.5 62 0.0013 35.5 6.7 79 37-119 69-178 (476)
32 PRK12485 bifunctional 3,4-dihy 41.4 31 0.00067 36.6 4.1 34 40-74 330-363 (369)
33 cd04743 NPD_PKS 2-Nitropropane 41.1 1.6E+02 0.0034 30.7 9.1 80 20-118 55-134 (320)
34 PRK09525 lacZ beta-D-galactosi 41.0 1.9E+02 0.004 35.0 10.9 96 22-119 352-464 (1027)
35 PF05990 DUF900: Alpha/beta hy 40.5 1E+02 0.0023 30.2 7.4 40 252-294 43-88 (233)
36 PRK09593 arb 6-phospho-beta-gl 38.2 70 0.0015 35.1 6.3 79 37-119 75-184 (478)
37 cd00641 GTP_cyclohydro2 GTP cy 37.9 46 0.001 31.8 4.3 34 41-74 133-166 (193)
38 PRK14019 bifunctional 3,4-dihy 37.1 40 0.00086 35.8 4.1 35 41-76 328-362 (367)
39 PRK15014 6-phospho-beta-glucos 36.7 73 0.0016 34.9 6.2 79 37-119 71-180 (477)
40 KOG0626 Beta-glucosidase, lact 34.7 1.1E+02 0.0024 34.0 7.0 74 253-335 402-486 (524)
41 TIGR03632 bact_S11 30S ribosom 34.6 82 0.0018 27.4 5.0 36 39-74 51-91 (108)
42 PF06117 DUF957: Enterobacteri 34.5 70 0.0015 25.4 4.0 45 87-145 10-55 (65)
43 PRK10340 ebgA cryptic beta-D-g 33.3 3.8E+02 0.0083 32.4 11.8 96 22-119 336-451 (1021)
44 PRK09314 bifunctional 3,4-dihy 32.3 56 0.0012 34.3 4.2 34 40-73 300-334 (339)
45 COG1433 Uncharacterized conser 32.3 86 0.0019 28.0 4.8 40 38-77 55-94 (121)
46 PF04909 Amidohydro_2: Amidohy 31.6 1.4E+02 0.0031 28.5 6.8 53 132-202 84-137 (273)
47 PRK08815 GTP cyclohydrolase; P 31.6 60 0.0013 34.5 4.3 38 41-78 305-342 (375)
48 PRK09318 bifunctional 3,4-dihy 31.3 62 0.0013 34.6 4.4 38 41-78 320-357 (387)
49 PRK09311 bifunctional 3,4-dihy 30.6 64 0.0014 34.6 4.4 38 40-77 338-375 (402)
50 PLN02831 Bifunctional GTP cycl 30.2 65 0.0014 35.1 4.4 37 41-77 373-409 (450)
51 PRK09319 bifunctional 3,4-dihy 29.6 67 0.0015 35.9 4.4 39 40-78 342-380 (555)
52 PRK09989 hypothetical protein; 28.6 5.6E+02 0.012 24.9 11.3 51 23-74 4-58 (258)
53 COG4213 XylF ABC-type xylose t 28.2 98 0.0021 32.3 5.0 74 59-155 175-249 (341)
54 PRK09852 cryptic 6-phospho-bet 28.1 1.6E+02 0.0035 32.3 7.0 78 38-119 74-182 (474)
55 TIGR03628 arch_S11P archaeal r 28.0 1.2E+02 0.0026 26.9 4.9 37 38-74 53-102 (114)
56 KOG0078 GTP-binding protein SE 27.9 1.1E+02 0.0025 29.8 5.2 83 19-119 41-128 (207)
57 PRK06552 keto-hydroxyglutarate 26.9 5.9E+02 0.013 24.7 10.1 89 35-143 117-210 (213)
58 TIGR01233 lacG 6-phospho-beta- 26.7 1.6E+02 0.0035 32.1 6.8 78 37-119 55-161 (467)
59 PF14871 GHL6: Hypothetical gl 26.3 1.4E+02 0.003 26.9 5.2 44 36-79 1-67 (132)
60 PRK13347 coproporphyrinogen II 25.7 1.9E+02 0.0042 31.2 7.1 20 129-148 263-282 (453)
61 CHL00041 rps11 ribosomal prote 24.8 1.5E+02 0.0033 26.1 5.0 35 39-73 64-103 (116)
62 PF00411 Ribosomal_S11: Riboso 24.7 1.2E+02 0.0025 26.5 4.2 35 40-74 52-91 (110)
63 cd02872 GH18_chitolectin_chito 24.5 4E+02 0.0086 27.5 9.0 76 68-146 69-151 (362)
64 PRK09607 rps11p 30S ribosomal 24.1 1.5E+02 0.0033 26.9 4.9 37 38-74 60-109 (132)
65 cd02874 GH18_CFLE_spore_hydrol 24.0 2.7E+02 0.0059 28.2 7.5 82 59-147 48-138 (313)
66 PF14587 Glyco_hydr_30_2: O-Gl 23.8 5.5E+02 0.012 27.5 9.7 96 60-158 108-227 (384)
67 PF02055 Glyco_hydro_30: O-Gly 23.8 1E+03 0.022 26.3 14.4 87 67-154 166-277 (496)
68 PRK07198 hypothetical protein; 23.5 65 0.0014 34.5 2.8 37 41-77 338-375 (418)
69 cd01543 PBP1_XylR Ligand-bindi 23.4 6.5E+02 0.014 23.9 9.9 129 37-192 97-239 (265)
70 PF00150 Cellulase: Cellulase 22.8 2.4E+02 0.0053 27.2 6.7 66 244-318 64-133 (281)
71 cd00598 GH18_chitinase-like Th 22.5 3.1E+02 0.0067 25.5 7.1 84 60-147 53-142 (210)
72 cd06418 GH25_BacA-like BacA is 22.4 7.2E+02 0.016 24.1 12.2 107 34-148 20-143 (212)
73 PRK05309 30S ribosomal protein 21.6 1.9E+02 0.0041 26.0 5.1 35 39-73 68-107 (128)
74 PF13721 SecD-TM1: SecD export 20.7 3E+02 0.0065 23.6 5.9 36 19-54 30-65 (101)
75 COG2159 Predicted metal-depend 20.5 6E+02 0.013 25.8 9.1 94 134-273 114-209 (293)
76 TIGR03234 OH-pyruv-isom hydrox 20.3 2E+02 0.0044 27.9 5.5 51 23-74 3-57 (254)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.5e-83 Score=648.50 Aligned_cols=307 Identities=43% Similarity=0.767 Sum_probs=248.7
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeCCCccccc-ccHHHHHHHHHHhhhcc
Q 011532 23 LGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPNKDLLDM-NSYDRAKQWVKRNVTRY 101 (483)
Q Consensus 23 ~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~n~~~~~~-~~~~~A~~Wv~~~v~~y 101 (483)
||||||+.++|+|+|++|++++|+++|++||||++|+++|+|++++||+|++||+|++++++ +++.+|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred ccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCCCceEEeccccceeccCCCCCCCCCCcccccchh
Q 011532 102 NFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVGDSIKATVPLNADVYESPENNPYPSFGRFRTDIL 181 (483)
Q Consensus 102 ~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~f~~~~~ 181 (483)
+| .++|++|+||||++.... ...|+|+|+++|++|++.||+++|||+|+++++++..+ ||||.|.|++++.
T Consensus 81 ~~--~~~i~~i~VGnEv~~~~~----~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s---~PPS~g~F~~~~~ 151 (310)
T PF00332_consen 81 LP--AVNIRYIAVGNEVLTGTD----NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNS---FPPSAGVFRSDIA 151 (310)
T ss_dssp TT--TSEEEEEEEEES-TCCSG----GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE----SSGGG-EESHHHH
T ss_pred Cc--ccceeeeecccccccCcc----ceeeccHHHHHHHHHHhcCcCCcceecccccccccccc---CCCccCcccccch
Confidence 87 489999999999986421 22799999999999999999989999999999999987 4999999999998
Q ss_pred HHHHHHHHHHHhcCCcceeecCcccccCCCC-CCccccccccCCCceecCCCCccchhhHHHhHHHHHHHHHHcCCCCCC
Q 011532 182 GQMTQIVEFLAKNNAPFTVNIYPFLSLYGND-DFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMP 260 (483)
Q Consensus 182 ~~l~~~ldfL~~~~s~~~vNiyPff~~~~~~-~i~ldyAlf~~~~~~~D~~~~~~y~n~fda~vDa~~~a~~k~g~~~~~ 260 (483)
+.|+++++||..++||||+|+||||+|..+| .++||||+|+++..+.| .+++|+||||+|+|++++||+|+|+++++
T Consensus 152 ~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D--~~~~y~nlfDa~~da~~~a~~~~g~~~~~ 229 (310)
T PF00332_consen 152 SVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVD--GGLAYTNLFDAMVDAVYAAMEKLGFPNVP 229 (310)
T ss_dssp HHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEE--TTEEESSHHHHHHHHHHHHHHTTT-TT--
T ss_pred hhhhHHHHHhhccCCCceeccchhhhccCCcccCCcccccccccccccc--cchhhhHHHHHHHHHHHHHHHHhCCCCce
Confidence 8999999999999999999999999999997 89999999999875558 47899999999999999999999999999
Q ss_pred EEEcccccCCCCCCCCChHHHHHHHHhHHHHHHhcCCCCCCCC-ceeEEEEEeeccCccCCCCCcccceeeeeecCCCcc
Q 011532 261 MIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPG-YIEVYLFGLVDEDAKSIDPGYFERHWGIFRYDGQPK 339 (483)
Q Consensus 261 vvI~ETGWPS~G~~~as~~na~~y~~~li~~~~s~~Gtp~rp~-~~~~y~F~lFDe~wK~~~~g~~E~~wGlf~~d~~~k 339 (483)
|+|+||||||+|+..++++||+.|++++++++. .|||+||+ .+++||||||||+||++ ..+|||||||++||+||
T Consensus 230 vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~--~~~E~~wGlf~~d~~~k 305 (310)
T PF00332_consen 230 VVVGETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPG--PEVERHWGLFYPDGTPK 305 (310)
T ss_dssp EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSS--SGGGGG--SB-TTSSBS
T ss_pred eEEeccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCC--CcccceeeeECCCCCee
Confidence 999999999999999999999999999999996 79999998 99999999999999972 24999999999999999
Q ss_pred eeccc
Q 011532 340 FAMDL 344 (483)
Q Consensus 340 y~l~~ 344 (483)
|+|+|
T Consensus 306 y~~~f 310 (310)
T PF00332_consen 306 YDLDF 310 (310)
T ss_dssp S----
T ss_pred cCCCC
Confidence 99986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=328.03 Aligned_cols=252 Identities=18% Similarity=0.245 Sum_probs=194.1
Q ss_pred CCCceeEEecCCCCC--CCCHHHHHHHHHh-CCC-CEEEEccCC----hhHHHHHhcCCCEEEEEeCCCcccccccHHHH
Q 011532 19 CVNGLGVNWGTQTTH--QLPPKTIVQMLKD-NGI-SKVKLFDAH----QGTMIALAGSDIEVMVAIPNKDLLDMNSYDRA 90 (483)
Q Consensus 19 ~~~~~GvnYg~~~~n--~ps~~~v~~llk~-~~~-~~VRiY~~d----~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A 90 (483)
+.++.+|+||++.++ |++.+|+..+|.. ..+ ..||+|.+| ++|++|+...|+||+||||..+.-+ .+.+.
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~-~~~~~- 119 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH-DAVEK- 119 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh-hhHHH-
Confidence 446789999999875 9999999877754 234 399999877 5799999999999999999854222 12221
Q ss_pred HHHHHHhhhccccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCCCceEEeccccceeccCCCCCCC
Q 011532 91 KQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVGDSIKATVPLNADVYESPENNPY 170 (483)
Q Consensus 91 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~p 170 (483)
-++..+.++. +++.|++|.||||+|+++ .-.+++|+.+|..+|.+|+++|++ +||+|++.|.++.+.
T Consensus 120 --til~ay~~~~--~~d~v~~v~VGnEal~r~--~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n----- 186 (305)
T COG5309 120 --TILSAYLPYN--GWDDVTTVTVGNEALNRN--DLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN----- 186 (305)
T ss_pred --HHHHHHhccC--CCCceEEEEechhhhhcC--CCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC-----
Confidence 2444566774 468999999999999863 344899999999999999999997 579999999998874
Q ss_pred CCCcccccchhHHHHHHHHHHHhcCCcceeecCcccccCCCCCCccccccccCCCceecCCCCccchhhHHHhHHHHHHH
Q 011532 171 PSFGRFRTDILGQMTQIVEFLAKNNAPFTVNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSA 250 (483)
Q Consensus 171 PS~g~f~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~~~i~ldyAlf~~~~~~~D~~~~~~y~n~fda~vDa~~~a 250 (483)
|.|++..||+ |+|.||||+.+. ...+. ++ +|-.|++-+..
T Consensus 187 -----------p~l~~~SDfi-------a~N~~aYwd~~~---------------~a~~~-----~~-f~~~q~e~vqs- 226 (305)
T COG5309 187 -----------PELCQASDFI-------AANAHAYWDGQT---------------VANAA-----GT-FLLEQLERVQS- 226 (305)
T ss_pred -----------hHHhhhhhhh-------hcccchhccccc---------------hhhhh-----hH-HHHHHHHHHHH-
Confidence 2566777776 699999998432 11121 22 33334554433
Q ss_pred HHHcCCCCCCEEEcccccCCCCCC----CCChHHHHHHHHhHHHHHHhcCCCCCCCCceeEEEEEeeccCccCCCCCccc
Q 011532 251 LKAVGHGDMPMIVGEVGWPTDGDK----NANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFE 326 (483)
Q Consensus 251 ~~k~g~~~~~vvI~ETGWPS~G~~----~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~y~F~lFDe~wK~~~~g~~E 326 (483)
++..+|+++|+||||||+|.. .||++||+.|++++++.+++ . ++++|+||+|||+||..+.-++|
T Consensus 227 ---a~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-~-------G~d~fvfeAFdd~WK~~~~y~VE 295 (305)
T COG5309 227 ---ACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-C-------GYDVFVFEAFDDDWKADGSYGVE 295 (305)
T ss_pred ---hcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-c-------CccEEEeeeccccccCccccchh
Confidence 333459999999999999974 59999999999999998764 2 58999999999999985433699
Q ss_pred ceeeeeecCC
Q 011532 327 RHWGIFRYDG 336 (483)
Q Consensus 327 ~~wGlf~~d~ 336 (483)
+|||+++.|+
T Consensus 296 kywGv~~s~~ 305 (305)
T COG5309 296 KYWGVLSSDR 305 (305)
T ss_pred hceeeeccCC
Confidence 9999998775
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=1.5e-27 Score=198.57 Aligned_cols=83 Identities=45% Similarity=0.855 Sum_probs=79.4
Q ss_pred cceeeCCCCcchhhHHHHHhhcccc-ccccccCCCCCCCCCC-cchhhhHHHHHHHhhhCCCCCCccCCCceeEEecCCC
Q 011532 365 QWCMLNPDAKDMSKLVDNIKYACTW-SDCTALGYGSSCNNLD-ANGNASYAFNMYYQIKNQDELACGFQGLGKVTTQNLS 442 (483)
Q Consensus 365 ~wCv~~~~~~~~~~l~~~ld~aCg~-~dC~~I~~~g~c~~~~-~~~~~Sya~N~YYq~~~~~~~aCdF~G~a~~~~~dps 442 (483)
+|||+|+++ ++++||++|||||++ +||++|++||+||+++ .++|||||||+|||++++..++|||+|+|+++++|||
T Consensus 1 ~wCv~~~~~-~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDA-DEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCC-CHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 599999999 689999999999999 9999999999999995 5899999999999999999999999999999999999
Q ss_pred CCceee
Q 011532 443 QGQCSF 448 (483)
Q Consensus 443 ~~~C~~ 448 (483)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999975
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.84 E-value=2.2e-21 Score=158.79 Aligned_cols=70 Identities=36% Similarity=0.742 Sum_probs=59.2
Q ss_pred cceeeCCCCcchhhHHHHHhhcccc--ccccccCCCCCC-----CCC-CcchhhhHHHHHHHhhhCCCCCCccCCCcee
Q 011532 365 QWCMLNPDAKDMSKLVDNIKYACTW--SDCTALGYGSSC-----NNL-DANGNASYAFNMYYQIKNQDELACGFQGLGK 435 (483)
Q Consensus 365 ~wCv~~~~~~~~~~l~~~ld~aCg~--~dC~~I~~~g~c-----~~~-~~~~~~Sya~N~YYq~~~~~~~aCdF~G~a~ 435 (483)
+|||+++++ ++++|+++|||||++ +||++|++||+. |++ +.++|||||||+|||++++...+|||+|+||
T Consensus 1 l~Cv~~~~~-~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDA-DDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS--HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCC-CHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999 789999999999999 999999999994 555 4599999999999999999999999999996
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.24 E-value=1.8e-10 Score=116.35 Aligned_cols=193 Identities=19% Similarity=0.272 Sum_probs=100.5
Q ss_pred eeEEecCCCC-------C-CCCHHH---HHHHHHhCCCCEEEEccCCh-----hHHHHHhcCCCEEEEEeCCCccccc--
Q 011532 23 LGVNWGTQTT-------H-QLPPKT---IVQMLKDNGISKVKLFDAHQ-----GTMIALAGSDIEVMVAIPNKDLLDM-- 84 (483)
Q Consensus 23 ~GvnYg~~~~-------n-~ps~~~---v~~llk~~~~~~VRiY~~d~-----~vL~A~a~tgi~V~lGV~n~~~~~~-- 84 (483)
.||.|-+-++ + |-.++. -+.+||++|++.||+|..|| ..+++|++.||.|++.|... ..++
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 6999998765 2 222322 24578999999999999885 68999999999999999875 3344
Q ss_pred ccHHHHHHH-------HHHhhhccccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCCCceEEeccc
Q 011532 85 NSYDRAKQW-------VKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVGDSIKATVPL 157 (483)
Q Consensus 85 ~~~~~A~~W-------v~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~ 157 (483)
.++ +..| ..+-|..+. +-+|+-+..+|||+++.......++.+-.++|++|+.+++.+++ +|||+.+-
T Consensus 109 ~~P--~~sw~~~l~~~~~~vid~fa--~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa 183 (314)
T PF03198_consen 109 SDP--APSWNTDLLDRYFAVIDAFA--KYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA 183 (314)
T ss_dssp TS--------HHHHHHHHHHHHHHT--T-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CCC--cCCCCHHHHHHHHHHHHHhc--cCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc
Confidence 222 1223 112233332 23799999999999986433345788999999999999999986 49999753
Q ss_pred cceeccCCCCCCCCCCcccccchhHHHHHHHHHHH-----hcCCcceeecCcccccCCCCCCccccccccCCCceecCCC
Q 011532 158 NADVYESPENNPYPSFGRFRTDILGQMTQIVEFLA-----KNNAPFTVNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGT 232 (483)
Q Consensus 158 ~~~vl~~s~~~~pPS~g~f~~~~~~~l~~~ldfL~-----~~~s~~~vNiyPff~~~~~~~i~ldyAlf~~~~~~~D~~~ 232 (483)
+ |+ . .+| .++.+||. ..-|+|.+|.|-|... ..|+ .
T Consensus 184 a-D~-~-----------~~r-------~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~----------Stf~------~--- 224 (314)
T PF03198_consen 184 A-DD-A-----------EIR-------QDLANYLNCGDDDERIDFFGLNSYEWCGD----------STFE------T--- 224 (314)
T ss_dssp -----T-----------TTH-------HHHHHHTTBTT-----S-EEEEE----SS------------HH------H---
T ss_pred c-CC-h-----------hHH-------HHHHHHhcCCCcccccceeeeccceecCC----------Cccc------c---
Confidence 2 11 0 122 24556665 3457889999977641 1111 1
Q ss_pred CccchhhHHHhHHHHHHHHHHcCCCCCCEEEcccccCCCC
Q 011532 233 GIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDG 272 (483)
Q Consensus 233 ~~~y~n~fda~vDa~~~a~~k~g~~~~~vvI~ETGWPS~G 272 (483)
..|. .+.... .++ .+||+.+|.|.-+..
T Consensus 225 -SGy~--------~l~~~f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 225 -SGYD--------RLTKEF--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp -HSHH--------HHHHHH--TT--SS-EEEEEE---SSS
T ss_pred -ccHH--------HHHHHh--hCC-CCCeEEcccCCCCCC
Confidence 1233 222222 244 599999999998655
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.85 E-value=4.6e-07 Score=93.42 Aligned_cols=245 Identities=19% Similarity=0.253 Sum_probs=120.6
Q ss_pred HHHHHHHHHhCCCCEEE--Ecc-------CC-hh---HHHHHhcCCCEEEEEeCCCc---------ccc-cc--cHH---
Q 011532 37 PKTIVQMLKDNGISKVK--LFD-------AH-QG---TMIALAGSDIEVMVAIPNKD---------LLD-MN--SYD--- 88 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VR--iY~-------~d-~~---vL~A~a~tgi~V~lGV~n~~---------~~~-~~--~~~--- 88 (483)
..++.++||..|++.|| +|. .| .. ..+.+++.||+|+|..--+| ++. .. +.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999998555 552 12 23 34556689999999987643 111 11 111
Q ss_pred -HHHHHHHHhhhccccCCCceEEEEeeecccccc--c--cCCCchhhHHHHHHHHHHHHHhcCCCCceEEeccccceecc
Q 011532 89 -RAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLK--A--YNGSFLNTTFPALQNIQNALNEAGVGDSIKATVPLNADVYE 163 (483)
Q Consensus 89 -~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~--~--~~~~~~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~~~~vl~ 163 (483)
+..++.+.-+... ...+..++.|-||||+-.. + .+..-.+.+...++...+++|+.+-+ +||-.- +.
T Consensus 106 ~~v~~yT~~vl~~l-~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH-----~~ 177 (332)
T PF07745_consen 106 KAVYDYTKDVLQAL-KAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLH-----LA 177 (332)
T ss_dssp HHHHHHHHHHHHHH-HHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEE-----ES
T ss_pred HHHHHHHHHHHHHH-HHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEE-----EC
Confidence 2222322222222 2235788999999996432 1 11122566777777777888775433 444331 12
Q ss_pred CCCCCCCCCCcccccchhHHHHHHHHHHHh---cCCcceeecCcccccCCCCCCccccccccCCCceecCCCCccchhhH
Q 011532 164 SPENNPYPSFGRFRTDILGQMTQIVEFLAK---NNAPFTVNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQYTNVF 240 (483)
Q Consensus 164 ~s~~~~pPS~g~f~~~~~~~l~~~ldfL~~---~~s~~~vNiyPff~~~~~~~i~ldyAlf~~~~~~~D~~~~~~y~n~f 240 (483)
+ |-.... +.-..+.|.. .=|.+.++.||||... .+ .+
T Consensus 178 ~-----~~~~~~--------~~~~f~~l~~~g~d~DviGlSyYP~w~~~------------------l~---------~l 217 (332)
T PF07745_consen 178 N-----GGDNDL--------YRWFFDNLKAAGVDFDVIGLSYYPFWHGT------------------LE---------DL 217 (332)
T ss_dssp ------TTSHHH--------HHHHHHHHHHTTGG-SEEEEEE-STTST-------------------HH---------HH
T ss_pred C-----CCchHH--------HHHHHHHHHhcCCCcceEEEecCCCCcch------------------HH---------HH
Confidence 1 111111 1222222322 3488999999999720 01 12
Q ss_pred HHhHHHHHHHHHHcCCCCCCEEEcccccCCCCC-----------------CCCChHHHHHHHHhHHHHHHhcCCCCCCCC
Q 011532 241 DANFDTLVSALKAVGHGDMPMIVGEVGWPTDGD-----------------KNANNGNAYRFYNGLLPKLAANKGTPLRPG 303 (483)
Q Consensus 241 da~vDa~~~a~~k~g~~~~~vvI~ETGWPS~G~-----------------~~as~~na~~y~~~li~~~~s~~Gtp~rp~ 303 (483)
...++.+ .++ | +|+|+|.|||||..-+ -.+|++.|+.|++++++.+.+-.+. +
T Consensus 218 ~~~l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~----~ 287 (332)
T PF07745_consen 218 KNNLNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNG----G 287 (332)
T ss_dssp HHHHHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--T----T
T ss_pred HHHHHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccC----C
Confidence 2223222 233 3 5899999999999811 1268999999999999998762110 1
Q ss_pred ceeEEEEEeeccCccCC------CCC-cccceeeeeecCCCcceecc
Q 011532 304 YIEVYLFGLVDEDAKSI------DPG-YFERHWGIFRYDGQPKFAMD 343 (483)
Q Consensus 304 ~~~~y~F~lFDe~wK~~------~~g-~~E~~wGlf~~d~~~ky~l~ 343 (483)
.+-+|+-|- .|-+. +.| ..|.. +||+.+|++--.|+
T Consensus 288 g~GvfYWeP---~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 288 GLGVFYWEP---AWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp EEEEEEE-T---T-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred eEEEEeecc---ccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 456666552 12221 122 23333 88888887655443
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.3e-05 Score=80.40 Aligned_cols=221 Identities=18% Similarity=0.270 Sum_probs=118.7
Q ss_pred HHHHHHHHHhCCCCEEE--Ec----cCC--------h------hHHHHHhcCCCEEEEEeCCCccccc-ccHHHHHHH--
Q 011532 37 PKTIVQMLKDNGISKVK--LF----DAH--------Q------GTMIALAGSDIEVMVAIPNKDLLDM-NSYDRAKQW-- 93 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VR--iY----~~d--------~------~vL~A~a~tgi~V~lGV~n~~~~~~-~~~~~A~~W-- 93 (483)
.+++.+.||.+|++.|| +| |.| . ++-+-+++.||||++..--+|-=+- .-+..-.+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 56678899999998555 55 333 1 2334456899999998766531110 111111223
Q ss_pred -----HHHhhhcc-------ccCCCceEEEEeeecccccc--ccCCCc--hhhHHHHHHHHHHHHHhcCCCCceEEeccc
Q 011532 94 -----VKRNVTRY-------NFKGGVSIKYVAVGNEPFLK--AYNGSF--LNTTFPALQNIQNALNEAGVGDSIKATVPL 157 (483)
Q Consensus 94 -----v~~~v~~y-------~p~~~~~I~~I~VGNEvl~~--~~~~~~--~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~ 157 (483)
+++.|-.| ..+.+..+.-|-||||.-.. +..++. ...+-..++.-.+++|... ..|||-.-
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE-
Confidence 22222221 11234678889999997432 111221 3444555555555555532 23665542
Q ss_pred cceeccCCCCCCCCCCcccccchhHHHHHHHHHHHhcCCcceeecCcccccCCCCCCccccccccCCCceecCCCCccch
Q 011532 158 NADVYESPENNPYPSFGRFRTDILGQMTQIVEFLAKNNAPFTVNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQYT 237 (483)
Q Consensus 158 ~~~vl~~s~~~~pPS~g~f~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~~~i~ldyAlf~~~~~~~D~~~~~~y~ 237 (483)
+.+ |--.+.||--...+-+.-+|| |.|..--||||... +.+ ++
T Consensus 222 ----la~-----g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgt-----------------l~n----L~-- 264 (403)
T COG3867 222 ----LAE-----GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGT-----------------LNN----LT-- 264 (403)
T ss_pred ----ecC-----CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCc-----------------HHH----HH--
Confidence 222 223355652111223344555 67788899999731 111 11
Q ss_pred hhHHHhHHHHHHHHHHcCCCCCCEEEccccc--------------CCCCCC---CCChHHHHHHHHhHHHHHHhcCCCCC
Q 011532 238 NVFDANFDTLVSALKAVGHGDMPMIVGEVGW--------------PTDGDK---NANNGNAYRFYNGLLPKLAANKGTPL 300 (483)
Q Consensus 238 n~fda~vDa~~~a~~k~g~~~~~vvI~ETGW--------------PS~G~~---~as~~na~~y~~~li~~~~s~~Gtp~ 300 (483)
..++.+.. + | +|.|+|.||+. |+.+.. ..+++-|++|.+++|+.+..- |.
T Consensus 265 ----~nl~dia~---r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv---p~ 331 (403)
T COG3867 265 ----TNLNDIAS---R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV---PK 331 (403)
T ss_pred ----hHHHHHHH---H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC---CC
Confidence 11222211 1 2 58999999998 555432 267899999999999998752 21
Q ss_pred CCCceeEEEEE
Q 011532 301 RPGYIEVYLFG 311 (483)
Q Consensus 301 rp~~~~~y~F~ 311 (483)
. +++-+|+.|
T Consensus 332 ~-~GlGvFYWE 341 (403)
T COG3867 332 S-NGLGVFYWE 341 (403)
T ss_pred C-CceEEEEec
Confidence 1 145566555
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.95 E-value=0.0016 Score=72.63 Aligned_cols=257 Identities=15% Similarity=0.091 Sum_probs=138.0
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEcc--CChhHHHHHhcCCCEEEEEeCCCc--------------
Q 011532 23 LGVNWGTQTT---HQLPPKTI---VQMLKDNGISKVKLFD--AHQGTMIALAGSDIEVMVAIPNKD-------------- 80 (483)
Q Consensus 23 ~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRiY~--~d~~vL~A~a~tgi~V~lGV~n~~-------------- 80 (483)
.|+|+=.... .-.+.+.. +++||..|++.||+-. .++..+.++-..||-|+.=++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 5887643211 12344433 5678899999999943 257899999999999986553210
Q ss_pred -ccccc-------cHHHHHHHHHHhhhccccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCCCceE
Q 011532 81 -LLDMN-------SYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVGDSIK 152 (483)
Q Consensus 81 -~~~~~-------~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~~~Ik 152 (483)
.+... ..++..+-++..|.++. ....|..=.+|||.-.. . ......++.+.+.+++..=++ +
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~--NHPSIi~Ws~gNE~~~~---~---~~~~~~~~~l~~~~k~~DptR--~ 444 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDK--NHPSVVMWSIANEPASR---E---QGAREYFAPLAELTRKLDPTR--P 444 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhcc--CCceEEEEeeccCCCcc---c---hhHHHHHHHHHHHHHhhCCCC--c
Confidence 00111 01122222455566653 23578899999996421 1 123344555556666554333 4
Q ss_pred EeccccceeccCCCCCCCCCCcccccchhHHHHHHHHHHHhcCCcceeecCcccccCCCCCCccccccccCCCceecCCC
Q 011532 153 ATVPLNADVYESPENNPYPSFGRFRTDILGQMTQIVEFLAKNNAPFTVNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGT 232 (483)
Q Consensus 153 VsT~~~~~vl~~s~~~~pPS~g~f~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~~~i~ldyAlf~~~~~~~D~~~ 232 (483)
|+.+... .. +|... .+.+++|++ ..|.|+=|- .+. .|
T Consensus 445 vt~~~~~---~~-----~~~~~--------~~~~~~Dv~-------~~N~Y~~wy--~~~---------------~~--- 481 (604)
T PRK10150 445 VTCVNVM---FA-----TPDTD--------TVSDLVDVL-------CLNRYYGWY--VDS---------------GD--- 481 (604)
T ss_pred eEEEecc---cC-----Ccccc--------cccCcccEE-------EEcccceec--CCC---------------CC---
Confidence 5553211 01 11100 112334544 477764321 000 00
Q ss_pred CccchhhHHHhHHHHHHHHHHcCCCCCCEEEcccccCCCC------CCCCChHHHHHHHHhHHHHHHhcCCCCCCCCcee
Q 011532 233 GIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDG------DKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIE 306 (483)
Q Consensus 233 ~~~y~n~fda~vDa~~~a~~k~g~~~~~vvI~ETGWPS~G------~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~ 306 (483)
-......|+..++.. .+ .+ ++|++++|.|+.+.- +..-|.+.|+.|++...+.+.+ +|.-.-
T Consensus 482 ~~~~~~~~~~~~~~~----~~-~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~~~G 549 (604)
T PRK10150 482 LETAEKVLEKELLAW----QE-KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPAVVG 549 (604)
T ss_pred HHHHHHHHHHHHHHH----HH-hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCceEE
Confidence 000111222223211 11 13 799999999976531 2234688899988877776643 344466
Q ss_pred EEEEEeeccCccCCCCCcccceeeeeecCCCcceeccc
Q 011532 307 VYLFGLVDEDAKSIDPGYFERHWGIFRYDGQPKFAMDL 344 (483)
Q Consensus 307 ~y~F~lFDe~wK~~~~g~~E~~wGlf~~d~~~ky~l~~ 344 (483)
.|+..+||-.......-.-..+.||++.||+||-....
T Consensus 550 ~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~~ 587 (604)
T PRK10150 550 EQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAFL 587 (604)
T ss_pred EEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHHH
Confidence 88899999554321100113578999999999987654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.84 E-value=0.0016 Score=64.25 Aligned_cols=131 Identities=17% Similarity=0.051 Sum_probs=80.7
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccC-------------C-------hhHHHHHhcCCCEEEEEeCCCc-
Q 011532 22 GLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDA-------------H-------QGTMIALAGSDIEVMVAIPNKD- 80 (483)
Q Consensus 22 ~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~-------------d-------~~vL~A~a~tgi~V~lGV~n~~- 80 (483)
..|+|-. ..+.. ..++..+.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566655 21112 6788889999999999999721 1 1578889999999999988740
Q ss_pred ---cccc-ccHHHHHHHHHH---hhhccccCCCceEEEEeeeccccccccCCC----chhhHHHHHHHHHHHHHhcCCCC
Q 011532 81 ---LLDM-NSYDRAKQWVKR---NVTRYNFKGGVSIKYVAVGNEPFLKAYNGS----FLNTTFPALQNIQNALNEAGVGD 149 (483)
Q Consensus 81 ---~~~~-~~~~~A~~Wv~~---~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~----~~~~Lv~am~~i~~aL~~~gl~~ 149 (483)
.... .......+|+++ .+...+. ....|.++=+.||+........ ....+.+.++.+.+++++.+-+.
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~-~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYK-DNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHT-TTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccchhhHHHHHhhhhhhccccC-CCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 1111 222223333322 2333331 2345779999999986421100 13668889999999999998764
Q ss_pred ceEEec
Q 011532 150 SIKATV 155 (483)
Q Consensus 150 ~IkVsT 155 (483)
.|-|+.
T Consensus 167 ~i~~~~ 172 (281)
T PF00150_consen 167 LIIVGG 172 (281)
T ss_dssp EEEEEE
T ss_pred eeecCC
Confidence 444443
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.43 E-value=0.022 Score=56.62 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCCCCEEEcccccCCCCCCCCChHHHHHHHHhHHHHHHhcCCCCCCCCceeEEEEEeecc-CccCCCCCcc
Q 011532 247 LVSALKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDE-DAKSIDPGYF 325 (483)
Q Consensus 247 ~~~a~~k~g~~~~~vvI~ETGWPS~G~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~y~F~lFDe-~wK~~~~g~~ 325 (483)
+.+.|++++--++||.|||.+-|..+ +++.|+.+++++++.+.+. | .-..+++..+.|. .|.+
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~---p---~v~gi~~Wg~~d~~~W~~------ 234 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH---P---AVTGVTVWGVTDKYSWLD------ 234 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC---C---CeeEEEEeCCccCCcccC------
Confidence 44445544444799999999998754 3488999999999988763 2 2233555555553 3543
Q ss_pred cceeeeeecCCCcceec
Q 011532 326 ERHWGIFRYDGQPKFAM 342 (483)
Q Consensus 326 E~~wGlf~~d~~~ky~l 342 (483)
+.+-|||+.|++||-.+
T Consensus 235 ~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 235 GGAPLLFDANYQPKPAY 251 (254)
T ss_pred CCCceeECCCCCCChhh
Confidence 14679999999998654
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.70 E-value=0.066 Score=52.90 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=47.3
Q ss_pred CCEEEcccccCCCCCCCCChHHHHHHHHhHHHHHHhcCCCCCCCCceeEEEEEeeccCccCCCCCcccceeeeeecCCC
Q 011532 259 MPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSIDPGYFERHWGIFRYDGQ 337 (483)
Q Consensus 259 ~~vvI~ETGWPS~G~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~y~F~lFDe~wK~~~~g~~E~~wGlf~~d~~ 337 (483)
+||+|||.|+.. +....+.+.++.|++..+..+.+. +.-..+++|. |...+. .....-.|++.+|+
T Consensus 166 kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~VeryawF~-~~~~~~-----~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 166 KPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDSQ------PYVERYAWFG-FMNDGS-----GVNPNSALLDADGS 231 (239)
T ss_pred CCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhcC------CCeeEEEecc-cccccC-----CCccccccccCCCC
Confidence 999999999877 445678899999999999988652 2235688888 333322 23455677777774
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.50 E-value=0.3 Score=49.49 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=55.5
Q ss_pred ceeEEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEccC--ChhHHHHHhcCCCEEEEEeCCCcc---c--c----c
Q 011532 22 GLGVNWGTQTTH---QLPPKTI---VQMLKDNGISKVKLFDA--HQGTMIALAGSDIEVMVAIPNKDL---L--D----M 84 (483)
Q Consensus 22 ~~GvnYg~~~~n---~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~a~tgi~V~lGV~n~~~---~--~----~ 84 (483)
..|||+...... .++.+++ +++||+.|++.||+..- ++..+.++-..||-|+..++.... . . .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998874332 3455554 35678899999999643 478999999999999988776110 0 0 0
Q ss_pred ----ccHHHHHHHHHHhhhccccCCCceEEEEeeeccc
Q 011532 85 ----NSYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEP 118 (483)
Q Consensus 85 ----~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEv 118 (483)
...+.+.+.++..|.++. ..-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~--NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDR--NHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHT--T-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCc--CcCchheeecCccC
Confidence 112233344556666653 12467788899998
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=95.86 E-value=2 Score=46.21 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=45.4
Q ss_pred CCCCCEEEcccccCCCCCC-C--CChHHHHHHHHhHHHHHHh--cCCCCCCCCceeEEEEEeeccC-ccCCCCCccccee
Q 011532 256 HGDMPMIVGEVGWPTDGDK-N--ANNGNAYRFYNGLLPKLAA--NKGTPLRPGYIEVYLFGLVDED-AKSIDPGYFERHW 329 (483)
Q Consensus 256 ~~~~~vvI~ETGWPS~G~~-~--as~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~y~F~lFDe~-wK~~~~g~~E~~w 329 (483)
|++.||+|+|.|+...... . ..-+.-..|++..++.+.. ..|.+. .-|+.-++.|-- |.. +.++.|
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v----~GY~~Wsl~Dn~ew~~----gy~~rf 406 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV----RGYFVWSLLDNFEWAE----GYSKRF 406 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE----EEEEecccccccchhc----cccccc
Confidence 5556899999999754321 1 1122344566655444332 246553 357777887752 543 478999
Q ss_pred eeeecCCC
Q 011532 330 GIFRYDGQ 337 (483)
Q Consensus 330 Glf~~d~~ 337 (483)
||++.|..
T Consensus 407 Gl~~VD~~ 414 (427)
T TIGR03356 407 GLVHVDYE 414 (427)
T ss_pred ceEEECCC
Confidence 99999876
No 14
>PRK09936 hypothetical protein; Provisional
Probab=83.48 E-value=6.1 Score=40.38 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=44.0
Q ss_pred CCCceeEEecCCCCC-CCCHHHHHH---HHHhCCCCEEEE-c----cCC--------hhHHHHHhcCCCEEEEEeCCCc
Q 011532 19 CVNGLGVNWGTQTTH-QLPPKTIVQ---MLKDNGISKVKL-F----DAH--------QGTMIALAGSDIEVMVAIPNKD 80 (483)
Q Consensus 19 ~~~~~GvnYg~~~~n-~ps~~~v~~---llk~~~~~~VRi-Y----~~d--------~~vL~A~a~tgi~V~lGV~n~~ 80 (483)
.-+-.|+=|-|...+ --++++-.+ .++..|++.+=+ | +.| ...|+++.+.||+|.||++-|.
T Consensus 18 ~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 18 SQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred hhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 335668889998766 456666554 456689876644 2 223 3678899999999999999864
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=82.94 E-value=3.9 Score=42.86 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCCCEEEEccC-------C---------hhHHHHHhcCCCEEEEEeCCCccc--------c---------
Q 011532 37 PKTIVQMLKDNGISKVKLFDA-------H---------QGTMIALAGSDIEVMVAIPNKDLL--------D--------- 83 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRiY~~-------d---------~~vL~A~a~tgi~V~lGV~n~~~~--------~--------- 83 (483)
.++.+++||..|++.|||-.. . -.+|..+++.||+|+|+++....+ .
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 345667788899999998432 1 257888999999999999753211 0
Q ss_pred ---------c--cc---HHHHHHHHHHhhhccccCCCceEEEEeeeccccc
Q 011532 84 ---------M--NS---YDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFL 120 (483)
Q Consensus 84 ---------~--~~---~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~ 120 (483)
. .+ .+.+.+.+++.+..|- ....|.++.|+||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~--~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYG--DHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT--TTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhcc--ccceEEEEEeccccCc
Confidence 0 11 2345555655555663 2457999999999754
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=79.33 E-value=0.83 Score=49.42 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCEEEEc--------c-----CC-------hhHHHHHhcCCCEEEEEeCCCccccc-c------cHHHH
Q 011532 38 KTIVQMLKDNGISKVKLF--------D-----AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-N------SYDRA 90 (483)
Q Consensus 38 ~~v~~llk~~~~~~VRiY--------~-----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~------~~~~A 90 (483)
+|-+++||+.|++..|+- + .| .+++..+.+.||+.+|.+.--+++.. . +...+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 566889999999999874 1 12 26889999999999999986555432 1 22221
Q ss_pred ---HHHHHHhhhccccCCCceEEEEeeeccccc
Q 011532 91 ---KQWVKRNVTRYNFKGGVSIKYVAVGNEPFL 120 (483)
Q Consensus 91 ---~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~ 120 (483)
.+..+.-+..+ ++.|+.-+.=||+..
T Consensus 141 ~~F~~Ya~~~~~~~----gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 141 DWFARYAEFVFERF----GDRVKYWITFNEPNV 169 (455)
T ss_dssp HHHHHHHHHHHHHH----TTTBSEEEEEETHHH
T ss_pred HHHHHHHHHHHHHh----CCCcceEEeccccce
Confidence 12222223333 467889999999754
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=76.37 E-value=12 Score=39.25 Aligned_cols=103 Identities=9% Similarity=0.133 Sum_probs=59.8
Q ss_pred CCCEEEEcc-CChhHHHHHhcCCCEEEEEeCCCcccccccHHHHHHHHHHhhhccccCCCceEEEEeeeccccccccCCC
Q 011532 48 GISKVKLFD-AHQGTMIALAGSDIEVMVAIPNKDLLDMNSYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGS 126 (483)
Q Consensus 48 ~~~~VRiY~-~d~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~ 126 (483)
.+++|-+|+ .|++++..+.+.|++|++..-.. .+.+.+++.-.+++++ +..++. .-...+|-+==|-.......+
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~s-iv~~~~--~~gfDGIdIDwE~p~~~~~~d 130 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQ-KVELAK--SQFMDGINIDIEQPITKGSPE 130 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHH-HHHHHH--HhCCCeEEEcccCCCCCCcch
Confidence 578888885 47899999999999999864322 2223343332334333 222321 124556666555432111111
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCceEEec
Q 011532 127 FLNTTFPALQNIQNALNEAGVGDSIKATV 155 (483)
Q Consensus 127 ~~~~Lv~am~~i~~aL~~~gl~~~IkVsT 155 (483)
...++.-|+++|++|++.+.+-.+.|..
T Consensus 131 -~~~~t~llkelr~~l~~~~~~~~Lsvav 158 (358)
T cd02875 131 -YYALTELVKETTKAFKKENPGYQISFDV 158 (358)
T ss_pred -HHHHHHHHHHHHHHHhhcCCCcEEEEEE
Confidence 3568889999999999875433344433
No 18
>PLN03059 beta-galactosidase; Provisional
Probab=68.57 E-value=1e+02 Score=36.26 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCCEEEEccC---C---------------hhHHHHHhcCCCEEEEEe---------------CCCcccc--
Q 011532 39 TIVQMLKDNGISKVKLFDA---H---------------QGTMIALAGSDIEVMVAI---------------PNKDLLD-- 83 (483)
Q Consensus 39 ~v~~llk~~~~~~VRiY~~---d---------------~~vL~A~a~tgi~V~lGV---------------~n~~~~~-- 83 (483)
+..+.+|+.|++.|-+|-. . ..-|+.+++.||.|+|=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 3456667899999999821 1 245788889999998843 2211222
Q ss_pred c--cc---HHHHHHHHHHhhhcc-----ccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCCCceEE
Q 011532 84 M--NS---YDRAKQWVKRNVTRY-----NFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVGDSIKA 153 (483)
Q Consensus 84 ~--~~---~~~A~~Wv~~~v~~y-----~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~~~IkV 153 (483)
+ .+ .++.++|+..-+... .-..+..|..+=|-||.=. +...+-..--.+|+.+++.++++|+. |+.
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs--~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP--VEWEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc--eecccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 2 22 345566765433221 1112467889999999522 21111112367999999999999875 666
Q ss_pred eccc
Q 011532 154 TVPL 157 (483)
Q Consensus 154 sT~~ 157 (483)
-|.+
T Consensus 219 ~t~d 222 (840)
T PLN03059 219 VMCK 222 (840)
T ss_pred EECC
Confidence 5554
No 19
>PLN02814 beta-glucosidase
Probab=67.82 E-value=14 Score=40.84 Aligned_cols=74 Identities=14% Similarity=0.331 Sum_probs=45.1
Q ss_pred CCCCCEEEcccccCCCCCCCCChHHHHHHHHhHHHHHHh--cCCCCCCCCceeEEEEEeecc-CccCCCCCcccceeeee
Q 011532 256 HGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAA--NKGTPLRPGYIEVYLFGLVDE-DAKSIDPGYFERHWGIF 332 (483)
Q Consensus 256 ~~~~~vvI~ETGWPS~G~~~as~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~y~F~lFDe-~wK~~~~g~~E~~wGlf 332 (483)
|++.||+|+|-|+....+..-.-..-..|+++-+..+.. ..|.|.+ -||.-++.|- .|.. +.++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~----GY~~WSllDnfEW~~----Gy~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTR----GYFVWSMIDLYELLG----GYTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE----EEeeccchhhhchhc----cccCccceE
Confidence 666689999999975432111223334455554443332 1465543 5777788774 3543 478999999
Q ss_pred ecCCC
Q 011532 333 RYDGQ 337 (483)
Q Consensus 333 ~~d~~ 337 (483)
+.|..
T Consensus 457 yVD~~ 461 (504)
T PLN02814 457 YVNFS 461 (504)
T ss_pred EECCC
Confidence 98765
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=67.67 E-value=16 Score=39.84 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCEEEEc---------c---CC-------hhHHHHHhcCCCEEEEEeCCCccccc-c------cHHH-
Q 011532 37 PKTIVQMLKDNGISKVKLF---------D---AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-N------SYDR- 89 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRiY---------~---~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~------~~~~- 89 (483)
-+|-++|||+.|++.-|+= + .| .+++.++.+.||+-+|.+.--+++.. . +.+.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~v 135 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSNGDWLNRENI 135 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHcCCCCCHHHH
Confidence 3566889999988887752 1 12 26889999999999999987665532 2 1111
Q ss_pred --HHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 90 --AKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 90 --A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
-.+..+.-+..| ++ |+.-+-=||+.
T Consensus 136 ~~F~~YA~~~~~~f----gd-Vk~W~T~NEP~ 162 (469)
T PRK13511 136 DHFVRYAEFCFEEF----PE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHHh----CC-CCEEEEccchh
Confidence 122222223344 46 88888888874
No 21
>PLN02998 beta-glucosidase
Probab=65.97 E-value=15 Score=40.39 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCEEEEc--------c----CC-------hhHHHHHhcCCCEEEEEeCCCccccc-cc-------H---
Q 011532 38 KTIVQMLKDNGISKVKLF--------D----AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-NS-------Y--- 87 (483)
Q Consensus 38 ~~v~~llk~~~~~~VRiY--------~----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~~-------~--- 87 (483)
+|-+++||+.|++.-|+= + .| ..++.++.+.||+-+|.+.--+++.. .+ .
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v 164 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIV 164 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHH
Confidence 345788899998887752 1 23 26899999999999999987555432 11 1
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 88 DRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 88 ~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
+.-.+..+.-+..| +++|+.-+.=||+.
T Consensus 165 ~~F~~YA~~~~~~f----gdrVk~WiT~NEP~ 192 (497)
T PLN02998 165 RDFTAYADTCFKEF----GDRVSHWTTINEVN 192 (497)
T ss_pred HHHHHHHHHHHHHh----cCcCCEEEEccCcc
Confidence 11122223333344 47788888888865
No 22
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=62.74 E-value=16 Score=37.96 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=36.3
Q ss_pred hHHHHHhcCCCEEEEEeCCCccccc-ccHHHHHHHHHHhhhccc---cCCCceEEEEeeeccccccccCCCc-hhhHHHH
Q 011532 60 GTMIALAGSDIEVMVAIPNKDLLDM-NSYDRAKQWVKRNVTRYN---FKGGVSIKYVAVGNEPFLKAYNGSF-LNTTFPA 134 (483)
Q Consensus 60 ~vL~A~a~tgi~V~lGV~n~~~~~~-~~~~~A~~Wv~~~v~~y~---p~~~~~I~~I~VGNEvl~~~~~~~~-~~~Lv~a 134 (483)
++..-+.++|++|+.|+---.-... .+...--.|=-+|...++ -...-+|.+-=.|||.-...-...+ +.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 3444556899999999863211111 112334567666644432 2223367778889996432111112 5677777
Q ss_pred HHHHHHHHHh
Q 011532 135 LQNIQNALNE 144 (483)
Q Consensus 135 m~~i~~aL~~ 144 (483)
...+|+.|++
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777887765
No 23
>PLN02849 beta-glucosidase
Probab=60.04 E-value=20 Score=39.55 Aligned_cols=74 Identities=14% Similarity=0.281 Sum_probs=44.5
Q ss_pred CCCCCEEEcccccCCCCCCC--CChHHHHHHHHhHHHHHHh--cCCCCCCCCceeEEEEEeeccC-ccCCCCCcccceee
Q 011532 256 HGDMPMIVGEVGWPTDGDKN--ANNGNAYRFYNGLLPKLAA--NKGTPLRPGYIEVYLFGLVDED-AKSIDPGYFERHWG 330 (483)
Q Consensus 256 ~~~~~vvI~ETGWPS~G~~~--as~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~y~F~lFDe~-wK~~~~g~~E~~wG 330 (483)
|++.||+|+|-|++...... ..-..-..|+++-++.+.. ..|.+. .-||.-++.|-- |.. +.++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V----~GY~~WSl~DnfEW~~----Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDT----RGYFVWSFMDLYELLK----GYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCE----EEEeeccchhhhchhc----cccCccc
Confidence 65568999999998654211 1112223455554443332 246553 357777877742 442 4789999
Q ss_pred eeecCCC
Q 011532 331 IFRYDGQ 337 (483)
Q Consensus 331 lf~~d~~ 337 (483)
|++.|..
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9998765
No 24
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.94 E-value=26 Score=37.01 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=34.4
Q ss_pred chhhHHHhHHHHHHHHHHcCCCCCCEEEcccccCCCCCC------CCChHHHHHHHHhHHHHHHh
Q 011532 236 YTNVFDANFDTLVSALKAVGHGDMPMIVGEVGWPTDGDK------NANNGNAYRFYNGLLPKLAA 294 (483)
Q Consensus 236 y~n~fda~vDa~~~a~~k~g~~~~~vvI~ETGWPS~G~~------~as~~na~~y~~~li~~~~s 294 (483)
|.|-|++-+-..-+-.-..|++..+|+.+ |||.|.- ..|...++.-+.++++.+..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 55666655443333334467788899987 9999973 24555555556666665544
No 25
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.58 E-value=38 Score=26.06 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHhCCCCEEEEccCC-----hhHHHHHhcCCCEEEEEeCC
Q 011532 34 QLPPKTIVQMLKDNGISKVKLFDAH-----QGTMIALAGSDIEVMVAIPN 78 (483)
Q Consensus 34 ~ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~a~tgi~V~lGV~n 78 (483)
.-+++++++..+.+|++.|=+=|-+ +.....+++.||+|+.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3468889999999999988776655 45566677899999999854
No 26
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=52.64 E-value=17 Score=34.01 Aligned_cols=38 Identities=32% Similarity=0.572 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeC
Q 011532 40 IVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIP 77 (483)
Q Consensus 40 v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 77 (483)
-++.|+..|+++||+...+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36889999999999999999999999999999975443
No 27
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=48.80 E-value=25 Score=33.59 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=30.1
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEE
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVM 73 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~ 73 (483)
+|.|+..|+++||+...++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998878889999999987
No 28
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=48.15 E-value=26 Score=33.70 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=30.3
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEE
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVM 73 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~ 73 (483)
+|.|+..|++++|+...++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877889999999997
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=43.46 E-value=42 Score=31.42 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=18.0
Q ss_pred hHHHHHhcCCCEEEEEeCCC
Q 011532 60 GTMIALAGSDIEVMVAIPNK 79 (483)
Q Consensus 60 ~vL~A~a~tgi~V~lGV~n~ 79 (483)
.+|+++.+.||||++|++.+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 57899999999999999965
No 30
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=42.75 E-value=2.3e+02 Score=31.32 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=98.0
Q ss_pred HHHHHHhhhccccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCCCceEEeccccceeccCCCCCCC
Q 011532 91 KQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVGDSIKATVPLNADVYESPENNPY 170 (483)
Q Consensus 91 ~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~p 170 (483)
...|..-|.+|- ....|.+-..-||.+.+. ......++...+.....++..+=+.-|.|+-+-+. |. +|-
T Consensus 123 kkyvedlVk~yk--~~ptI~gw~l~Ne~lv~~--p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~----~~~ 192 (587)
T COG3934 123 KKYVEDLVKPYK--LDPTIAGWALRNEPLVEA--PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WP----QYA 192 (587)
T ss_pred HHHHHHHhhhhc--cChHHHHHHhcCCccccc--cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--cc----ccC
Confidence 345666677763 245677778889977642 23367788888888888887765444555544222 22 234
Q ss_pred CCCcccccchhHHHHHHHHHHHhcCCcceeecCcccccCCCCCCccccccccCCCceecCCCCccchhhHHHhHHHHHHH
Q 011532 171 PSFGRFRTDILGQMTQIVEFLAKNNAPFTVNIYPFLSLYGNDDFPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSA 250 (483)
Q Consensus 171 PS~g~f~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~~~i~ldyAlf~~~~~~~D~~~~~~y~n~fda~vDa~~~a 250 (483)
|-++.|. +||= .-|+||+|.. ++ |+... ..|- ...+|-
T Consensus 193 pyN~r~~----------vDya-------~~hLY~hyd~--sl-----~~r~s-----------~~yg---~~~l~i---- 230 (587)
T COG3934 193 PYNARFY----------VDYA-------ANHLYRHYDT--SL-----VSRVS-----------TVYG---KPYLDI---- 230 (587)
T ss_pred Cccccee----------eccc-------cchhhhhccC--Ch-----hheee-----------eeec---chhhcc----
Confidence 5455543 3332 3678997762 21 12111 0010 000110
Q ss_pred HHHcCCCCCCEEEcccccCCCCCCCCChHHHHHHHHhHHHHHHhcCCCCCCCCceeEEEEEeeccCccCCC-CC---ccc
Q 011532 251 LKAVGHGDMPMIVGEVGWPTDGDKNANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDEDAKSID-PG---YFE 326 (483)
Q Consensus 251 ~~k~g~~~~~vvI~ETGWPS~G~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~y~F~lFDe~wK~~~-~g---~~E 326 (483)
-+..| -+||+.-|-|-|++=...-|+. .|. +++.+....|- +.-.+-|+=|-+ .++. |. .-|
T Consensus 231 ~~~~g--~~pV~leefGfsta~g~e~s~a---yfi--w~~lal~~ggd-----GaLiwclsdf~~--gsdd~ey~w~p~e 296 (587)
T COG3934 231 PTIMG--WQPVNLEEFGFSTAFGQENSPA---YFI--WIRLALDTGGD-----GALIWCLSDFHL--GSDDSEYTWGPME 296 (587)
T ss_pred chhcc--cceeeccccCCcccccccccch---hhh--hhhhHHhhcCC-----ceEEEEecCCcc--CCCCCCCcccccc
Confidence 01122 4899999999998754333332 222 11212221210 122444443331 1111 22 357
Q ss_pred ceeeeeecCCCcceecc
Q 011532 327 RHWGIFRYDGQPKFAMD 343 (483)
Q Consensus 327 ~~wGlf~~d~~~ky~l~ 343 (483)
-.|||.+.|+++|+...
T Consensus 297 l~fgiIradgpek~~a~ 313 (587)
T COG3934 297 LEFGIIRADGPEKIDAM 313 (587)
T ss_pred ceeeeecCCCchhhhHH
Confidence 78999999999999863
No 31
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=42.48 E-value=62 Score=35.47 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc------CC-------hhHHHHHhcCCCEEEEEeCCCccccc-c-------cHH
Q 011532 37 PKTIVQMLKDNGISKVKL-------FD------AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-N-------SYD 88 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~-------~~~ 88 (483)
-+|-+++||+.|++.-|+ += .| ..++.++.+.||+-+|.+.--+++.. . +.+
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~ 148 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRK 148 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChH
Confidence 356688999988887775 21 23 25889999999999999987655432 1 222
Q ss_pred H---HHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 89 R---AKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 89 ~---A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
. -.+..+.-+..| +++|+.-+-=||+.
T Consensus 149 ~i~~F~~YA~~~f~~f----gdrVk~WiT~NEp~ 178 (476)
T PRK09589 149 LIDFFVRFAEVVFTRY----KDKVKYWMTFNEIN 178 (476)
T ss_pred HHHHHHHHHHHHHHHh----cCCCCEEEEecchh
Confidence 1 122222223333 46788877788864
No 32
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.37 E-value=31 Score=36.58 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.0
Q ss_pred HHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEE
Q 011532 40 IVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMV 74 (483)
Q Consensus 40 v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~l 74 (483)
-+++|+..|+++||+. .+|.=+.++.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3689999999999999 788888899999999973
No 33
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=41.14 E-value=1.6e+02 Score=30.73 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=49.2
Q ss_pred CCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeCCCcccccccHHHHHHHHHHhhh
Q 011532 20 VNGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPNKDLLDMNSYDRAKQWVKRNVT 99 (483)
Q Consensus 20 ~~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~ 99 (483)
...+|||.-...++ |..++.++.+...+.+.|=+..-+|...+.+++.|++|+.-|+. +..|..+.+.-+
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~Ga- 124 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLENGA- 124 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHcCC-
Confidence 45788887544332 33344555555566777766555566678888999999988763 445555443222
Q ss_pred ccccCCCceEEEEeeeccc
Q 011532 100 RYNFKGGVSIKYVAVGNEP 118 (483)
Q Consensus 100 ~y~p~~~~~I~~I~VGNEv 118 (483)
+. -|+-|.|.
T Consensus 125 -------D~--vVaqG~EA 134 (320)
T cd04743 125 -------RK--FIFEGREC 134 (320)
T ss_pred -------CE--EEEecCcC
Confidence 22 36679996
No 34
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=40.99 E-value=1.9e+02 Score=35.00 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=59.0
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEccC--ChhHHHHHhcCCCEEEEEeCCCcc-----ccc-ccH
Q 011532 22 GLGVNWGTQTT---HQLPPKTI---VQMLKDNGISKVKLFDA--HQGTMIALAGSDIEVMVAIPNKDL-----LDM-NSY 87 (483)
Q Consensus 22 ~~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~a~tgi~V~lGV~n~~~-----~~~-~~~ 87 (483)
..|+|+-.... .-.+++++ ++++|..|++.||+-.- ++..+..+-..||-|+--++.+.. ..+ .++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 45888764322 23455554 45678899999999542 478899999999999877654210 111 121
Q ss_pred ---HHHHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 88 ---DRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 88 ---~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
++..+-++..|.+.. ..-.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~Rdr--NHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDR--NHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEEeCccCCC
Confidence 122222444555542 235788899999963
No 35
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=40.50 E-value=1e+02 Score=30.17 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=25.6
Q ss_pred HHcCCCCCCEEEcccccCCCCCC------CCChHHHHHHHHhHHHHHHh
Q 011532 252 KAVGHGDMPMIVGEVGWPTDGDK------NANNGNAYRFYNGLLPKLAA 294 (483)
Q Consensus 252 ~k~g~~~~~vvI~ETGWPS~G~~------~as~~na~~y~~~li~~~~s 294 (483)
..++++..+|+. .|||.|.. ..+....+..+.++++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 446777766666 59999974 13444555566667776654
No 36
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=38.25 E-value=70 Score=35.07 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCCEEEEc-------c------CC-------hhHHHHHhcCCCEEEEEeCCCccccc-c-------cHH
Q 011532 37 PKTIVQMLKDNGISKVKLF-------D------AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-N-------SYD 88 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRiY-------~------~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~-------~~~ 88 (483)
-+|-++|||+.|++.-|+= - .| ..++.++.+.||+-+|.++--+++.. . +.+
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~ 154 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRK 154 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChH
Confidence 3566889999988887752 0 13 25889999999999999986555432 1 112
Q ss_pred H---HHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 89 R---AKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 89 ~---A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
. -.+..+.-+..| +++|+.-+-=||+.
T Consensus 155 ~v~~F~~YA~~~~~~f----gdrVk~WiT~NEP~ 184 (478)
T PRK09593 155 MVGFYERLCRTLFTRY----KGLVKYWLTFNEIN 184 (478)
T ss_pred HHHHHHHHHHHHHHHh----cCcCCEEEeecchh
Confidence 1 112222223344 46788877778864
No 37
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=37.93 E-value=46 Score=31.81 Aligned_cols=34 Identities=38% Similarity=0.570 Sum_probs=30.3
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEE
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMV 74 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~l 74 (483)
+|.|+..|++++|+.+..+.-+.++.+.||+|.=
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~ 166 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVE 166 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEE
Confidence 6889999999999999888778899999999983
No 38
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.14 E-value=40 Score=35.77 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=30.8
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEe
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAI 76 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV 76 (483)
+|.|+..|+++||+.. +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6889999999999998 8988899999999997333
No 39
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=36.67 E-value=73 Score=34.92 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCEEEE-------cc------CC-------hhHHHHHhcCCCEEEEEeCCCcccc--------cccHH
Q 011532 37 PKTIVQMLKDNGISKVKL-------FD------AH-------QGTMIALAGSDIEVMVAIPNKDLLD--------MNSYD 88 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGV~n~~~~~--------~~~~~ 88 (483)
-++-+++||+.|++..|+ +- .| ..++.++.+.||+.+|.+.=-+++. +.+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~ 150 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRK 150 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChH
Confidence 356788999888877764 21 13 2689999999999999996544432 11222
Q ss_pred HH---HHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 89 RA---KQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 89 ~A---~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
.+ .+..+.-+..| +++|+.-+.=||+.
T Consensus 151 ~~~~F~~Ya~~~f~~f----gdrVk~WiT~NEp~ 180 (477)
T PRK15014 151 VVDFFVRFAEVVFERY----KHKVKYWMTFNEIN 180 (477)
T ss_pred HHHHHHHHHHHHHHHh----cCcCCEEEEecCcc
Confidence 22 22222223444 46788888888864
No 40
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=34.69 E-value=1.1e+02 Score=33.98 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=47.9
Q ss_pred HcCCCCCCEEEcccccCCCCCCC----------CChHHHHHHHHhHHHHHHhcCCCCCCCCceeEEEEEeeccC-ccCCC
Q 011532 253 AVGHGDMPMIVGEVGWPTDGDKN----------ANNGNAYRFYNGLLPKLAANKGTPLRPGYIEVYLFGLVDED-AKSID 321 (483)
Q Consensus 253 k~g~~~~~vvI~ETGWPS~G~~~----------as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~y~F~lFDe~-wK~~~ 321 (483)
|-.|+|.+|.|+|-|-+...+.. .=++..+.|++.+.+.+.. .|.- -.-+|+.++.|-- |..
T Consensus 402 K~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn----v~GYf~WSLmDnfEw~~-- 474 (524)
T KOG0626|consen 402 KDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN----VKGYFVWSLLDNFEWLD-- 474 (524)
T ss_pred HhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc----eeeEEEeEcccchhhhc--
Confidence 34588999999999999875432 2223445555555555542 2331 2358889988743 553
Q ss_pred CCcccceeeeeecC
Q 011532 322 PGYFERHWGIFRYD 335 (483)
Q Consensus 322 ~g~~E~~wGlf~~d 335 (483)
+..-.||||+-|
T Consensus 475 --Gy~~RFGlyyVD 486 (524)
T KOG0626|consen 475 --GYKVRFGLYYVD 486 (524)
T ss_pred --CcccccccEEEe
Confidence 467889999864
No 41
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=34.58 E-value=82 Score=27.41 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCEEEEc--cCC---hhHHHHHhcCCCEEEE
Q 011532 39 TIVQMLKDNGISKVKLF--DAH---QGTMIALAGSDIEVMV 74 (483)
Q Consensus 39 ~v~~llk~~~~~~VRiY--~~d---~~vL~A~a~tgi~V~l 74 (483)
++.+.++.+|++.|+++ +.. ..+|++|+..|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 34556677899999988 333 5789999999998653
No 42
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=34.47 E-value=70 Score=25.38 Aligned_cols=45 Identities=9% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhccccCCCceEEEEeeeccccccccC-CCchhhHHHHHHHHHHHHHhc
Q 011532 87 YDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYN-GSFLNTTFPALQNIQNALNEA 145 (483)
Q Consensus 87 ~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~-~~~~~~Lv~am~~i~~aL~~~ 145 (483)
..-...|+++||.- |+|.+++++. ..-...|+|+++..++.++..
T Consensus 10 L~iLi~WLedNi~~--------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 10 LEILIAWLEDNIDC--------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHcccCC--------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 44567899888754 3333443211 122567999999999888753
No 43
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=33.30 E-value=3.8e+02 Score=32.39 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=58.0
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEccC--ChhHHHHHhcCCCEEEEEeCCCc--------cccc-
Q 011532 22 GLGVNWGTQTT---HQLPPKTI---VQMLKDNGISKVKLFDA--HQGTMIALAGSDIEVMVAIPNKD--------LLDM- 84 (483)
Q Consensus 22 ~~GvnYg~~~~---n~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~a~tgi~V~lGV~n~~--------~~~~- 84 (483)
..|+|+-.... ...+++++ +++||+.|++.||+-.- ++..+.++-..||-|+--++.+. ...+
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 45888754321 12345544 56778899999999642 36789999999999987543211 0011
Q ss_pred ccH---HHHHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 85 NSY---DRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 85 ~~~---~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
.++ ++..+-++..|.+.. ....|..=++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~Rdr--NHPSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQK--NHPSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECccCcc
Confidence 221 222233555566552 235788888999974
No 44
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.34 E-value=56 Score=34.27 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=30.5
Q ss_pred HHHHHHhCCCCEEEEccCC-hhHHHHHhcCCCEEE
Q 011532 40 IVQMLKDNGISKVKLFDAH-QGTMIALAGSDIEVM 73 (483)
Q Consensus 40 v~~llk~~~~~~VRiY~~d-~~vL~A~a~tgi~V~ 73 (483)
.++.|+..|+++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3688999999999999999 888889999999986
No 45
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.32 E-value=86 Score=28.02 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeC
Q 011532 38 KTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIP 77 (483)
Q Consensus 38 ~~v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 77 (483)
-.+.++|+.+|++.|=+...-+..+.+|++.||+|+.+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999888889999999999999999977
No 46
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=31.58 E-value=1.4e+02 Score=28.53 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeccccceeccCCCCCCCCCCcccccchhHHH-HHHHHHHHhcCCcceeec
Q 011532 132 FPALQNIQNALNEAGVGDSIKATVPLNADVYESPENNPYPSFGRFRTDILGQM-TQIVEFLAKNNAPFTVNI 202 (483)
Q Consensus 132 v~am~~i~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~f~~~~~~~l-~~~ldfL~~~~s~~~vNi 202 (483)
-.+++.+.+.+...|+.+ |++....... .|.. +.+ .++.+.+.+.+=|+.+|+
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~---------~~~~--------~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGF---------DPDD--------PRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTC---------CTTS--------GHCHHHHHHHHHHHT-EEEEEE
T ss_pred hhHHHHHHHhccccceee-eEecCCCCcc---------cccc--------HHHHHHHHHHHHhhccceeeec
Confidence 357888889998889876 8877632111 1111 122 478888888887777774
No 47
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.57 E-value=60 Score=34.52 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=32.7
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeCC
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 78 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~n 78 (483)
+|.|+..|+++||+...+|.=+.++.+.||+|.==++.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 68899999999999999998888999999999844443
No 48
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.29 E-value=62 Score=34.59 Aligned_cols=38 Identities=37% Similarity=0.482 Sum_probs=33.3
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeCC
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 78 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~n 78 (483)
++.|+..|+++||+...+|.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 68899999999999999998889999999999855553
No 49
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.58 E-value=64 Score=34.62 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeC
Q 011532 40 IVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIP 77 (483)
Q Consensus 40 v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 77 (483)
.++.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36889999999999999999888899999999984444
No 50
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=30.16 E-value=65 Score=35.13 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=32.4
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeC
Q 011532 41 VQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIP 77 (483)
Q Consensus 41 ~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 77 (483)
++.|+..|+++||+...+|.=+.++.+.||+|.==++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6889999999999999999888999999999974444
No 51
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=29.63 E-value=67 Score=35.89 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCEEEEccCChhHHHHHhcCCCEEEEEeCC
Q 011532 40 IVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 78 (483)
Q Consensus 40 v~~llk~~~~~~VRiY~~d~~vL~A~a~tgi~V~lGV~n 78 (483)
.++.|+..|+++||+..-+|.=+.++++.||+|.==++.
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 368899999999999999999999999999999855543
No 52
>PRK09989 hypothetical protein; Provisional
Probab=28.58 E-value=5.6e+02 Score=24.94 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=38.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEc---cCC-hhHHHHHhcCCCEEEE
Q 011532 23 LGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLF---DAH-QGTMIALAGSDIEVMV 74 (483)
Q Consensus 23 ~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY---~~d-~~vL~A~a~tgi~V~l 74 (483)
..+|.+.+...+ +-.+.++.+++.||+.|-+. +.+ .++.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456777765554 56688888999999999984 333 4677788899999886
No 53
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=28.22 E-value=98 Score=32.26 Aligned_cols=74 Identities=19% Similarity=0.067 Sum_probs=50.5
Q ss_pred hhHHHHHhcCC-CEEEEEeCCCcccccccHHHHHHHHHHhhhccccCCCceEEEEeeeccccccccCCCchhhHHHHHHH
Q 011532 59 QGTMIALAGSD-IEVMVAIPNKDLLDMNSYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQN 137 (483)
Q Consensus 59 ~~vL~A~a~tg-i~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~ 137 (483)
..||+++..+| |++ +|=.- .+. -.++.|.+|+...+..++ ++|.+|+--|.-.. ..
T Consensus 175 m~VLkp~idsGkik~-~Ge~~--~d~-W~ps~Aq~~men~lta~~----~~vdaVvA~nDgta-----------gG---- 231 (341)
T COG4213 175 MKVLKPLIDSGKIKV-VGEQW--TDG-WLPSNAQQIMENLLTANY----NDIDAVVAPNDGTA-----------GG---- 231 (341)
T ss_pred HHHHHHHhhCCceEE-eeecc--ccc-cCHHHHHHHHHHHHhccc----CceeEEEcCCCchh-----------HH----
Confidence 37899988888 555 66321 223 357788889988888874 56999877666321 11
Q ss_pred HHHHHHhcCCCCceEEec
Q 011532 138 IQNALNEAGVGDSIKATV 155 (483)
Q Consensus 138 i~~aL~~~gl~~~IkVsT 155 (483)
+-++|++.||.+.++||=
T Consensus 232 aI~aL~a~Gl~g~vpVsG 249 (341)
T COG4213 232 AIAALKAQGLAGKVPVSG 249 (341)
T ss_pred HHHHHHhcccCCCCcccC
Confidence 225788899998898764
No 54
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.06 E-value=1.6e+02 Score=32.30 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCEEEE-------cc------CC-------hhHHHHHhcCCCEEEEEeCCCccccc-c-------cHHH
Q 011532 38 KTIVQMLKDNGISKVKL-------FD------AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-N-------SYDR 89 (483)
Q Consensus 38 ~~v~~llk~~~~~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~-------~~~~ 89 (483)
++-+++|+..|++..|+ +- .| ..++.++.+.||+.+|.+.--+++.. . +.+.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~ 153 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKM 153 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHH
Confidence 55678888888877765 21 13 25889999999999999987665542 1 2222
Q ss_pred H---HHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 90 A---KQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 90 A---~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
+ ....+.-+..| +++|+.-+.=||+.
T Consensus 154 ~~~F~~ya~~~~~~f----gd~Vk~WiTfNEPn 182 (474)
T PRK09852 154 VEFFSRYARTCFEAF----DGLVKYWLTFNEIN 182 (474)
T ss_pred HHHHHHHHHHHHHHh----cCcCCeEEeecchh
Confidence 1 12222223333 46787877778864
No 55
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=28.02 E-value=1.2e+02 Score=26.90 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCEEEEc--c--------CC---hhHHHHHhcCCCEEEE
Q 011532 38 KTIVQMLKDNGISKVKLF--D--------AH---QGTMIALAGSDIEVMV 74 (483)
Q Consensus 38 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~a~tgi~V~l 74 (483)
+++.+..+.+|++.|+++ . .. ..+|++|+..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 445566677899988887 3 23 4789999999999753
No 56
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=1.1e+02 Score=29.81 Aligned_cols=83 Identities=14% Similarity=0.294 Sum_probs=50.4
Q ss_pred CCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCC-----hhHHHHHhcCCCEEEEEeCCCcccccccHHHHHHH
Q 011532 19 CVNGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAH-----QGTMIALAGSDIEVMVAIPNKDLLDMNSYDRAKQW 93 (483)
Q Consensus 19 ~~~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~W 93 (483)
.-..+||.+-...-.++. .--+++|||+- ..+..+....-+.|+|..-.... .+-.....|
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfeni~~W 106 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFENIRNW 106 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHHHHHHH
Confidence 345677777654333333 12367888875 36777766555566665543322 233455668
Q ss_pred HHHhhhccccCCCceEEEEeeecccc
Q 011532 94 VKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 94 v~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
++ +|..+.+ ..|.-|.|||-.=
T Consensus 107 ~~-~I~e~a~---~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 107 IK-NIDEHAS---DDVVKILVGNKCD 128 (207)
T ss_pred HH-HHHhhCC---CCCcEEEeecccc
Confidence 75 5888754 5788999999863
No 57
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.93 E-value=5.9e+02 Score=24.71 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEccCC---hhHHHHHhc--CCCEEEEEeCCCcccccccHHHHHHHHHHhhhccccCCCceE
Q 011532 35 LPPKTIVQMLKDNGISKVKLFDAH---QGTMIALAG--SDIEVMVAIPNKDLLDMNSYDRAKQWVKRNVTRYNFKGGVSI 109 (483)
Q Consensus 35 ps~~~v~~llk~~~~~~VRiY~~d---~~vL~A~a~--tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~~~I 109 (483)
-+++|+.+.++ .|.+.|++|-++ ++-++++++ .+++++. ...+ +.+.+.+|++ ..+
T Consensus 117 ~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI----~~~N~~~~l~-----------aGa 177 (213)
T PRK06552 117 MTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV----NLDNVKDWFA-----------AGA 177 (213)
T ss_pred CCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC----CHHHHHHHHH-----------CCC
Confidence 36888877764 689999999655 566777764 2355442 1222 2455555643 345
Q ss_pred EEEeeeccccccccCCCchhhHHHHHHHHHHHHH
Q 011532 110 KYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALN 143 (483)
Q Consensus 110 ~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~ 143 (483)
.+|.||...+.....++ ++.+-...++++++++
T Consensus 178 ~~vavgs~l~~~~~~~~-~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 178 DAVGIGGELNKLASQGD-FDLITEKAKKYMSSLR 210 (213)
T ss_pred cEEEEchHHhCccccCC-HHHHHHHHHHHHHHHH
Confidence 68899988754321222 4556666666665554
No 58
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.67 E-value=1.6e+02 Score=32.10 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCCEEEEc-------c-----CC-------hhHHHHHhcCCCEEEEEeCCCccccc-c------cHHH-
Q 011532 37 PKTIVQMLKDNGISKVKLF-------D-----AH-------QGTMIALAGSDIEVMVAIPNKDLLDM-N------SYDR- 89 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRiY-------~-----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-~------~~~~- 89 (483)
-+|-++||++.|++.-|+= = .| .+++.++.+.||+-+|.+.--+++.. . +.+.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~v 134 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNRENI 134 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHcCCCCCHHHH
Confidence 3556788998888777752 1 12 26889999999999999987665532 1 2111
Q ss_pred --HHHHHHHhhhccccCCCceEEEEeeecccc
Q 011532 90 --AKQWVKRNVTRYNFKGGVSIKYVAVGNEPF 119 (483)
Q Consensus 90 --A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl 119 (483)
-.+..+.-+..| +. |+.-+-=||+.
T Consensus 135 ~~F~~YA~~~f~~f----gd-Vk~WiT~NEP~ 161 (467)
T TIGR01233 135 EHFIDYAAFCFEEF----PE-VNYWTTFNEIG 161 (467)
T ss_pred HHHHHHHHHHHHHh----CC-CCEEEEecchh
Confidence 122222223344 24 77777778864
No 59
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=26.26 E-value=1.4e+02 Score=26.88 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=33.3
Q ss_pred CHHHHHHHHHhCCCCEEEEccC---------------------C--hhHHHHHhcCCCEEEEEeCCC
Q 011532 36 PPKTIVQMLKDNGISKVKLFDA---------------------H--QGTMIALAGSDIEVMVAIPNK 79 (483)
Q Consensus 36 s~~~v~~llk~~~~~~VRiY~~---------------------d--~~vL~A~a~tgi~V~lGV~n~ 79 (483)
.|++.++.||..+++.|-+|.- | .++++|+.+.||+|++=+...
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3678888888888888888642 1 367888889999998876543
No 60
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.67 E-value=1.9e+02 Score=31.25 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHhcCCC
Q 011532 129 NTTFPALQNIQNALNEAGVG 148 (483)
Q Consensus 129 ~~Lv~am~~i~~aL~~~gl~ 148 (483)
...+.-++.+.+.|.++||.
T Consensus 263 ~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 263 EERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHCCCE
Confidence 45566677888999999985
No 61
>CHL00041 rps11 ribosomal protein S11
Probab=24.78 E-value=1.5e+02 Score=26.11 Aligned_cols=35 Identities=11% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCEEEEc--cCC---hhHHHHHhcCCCEEE
Q 011532 39 TIVQMLKDNGISKVKLF--DAH---QGTMIALAGSDIEVM 73 (483)
Q Consensus 39 ~v~~llk~~~~~~VRiY--~~d---~~vL~A~a~tgi~V~ 73 (483)
++.+.++..|++.|+++ +.. ..++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34455667899988888 332 578999999999875
No 62
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=24.65 E-value=1.2e+02 Score=26.47 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCEEEEc--cCC---hhHHHHHhcCCCEEEE
Q 011532 40 IVQMLKDNGISKVKLF--DAH---QGTMIALAGSDIEVMV 74 (483)
Q Consensus 40 v~~llk~~~~~~VRiY--~~d---~~vL~A~a~tgi~V~l 74 (483)
+.+.++..|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 52 ~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 52 IAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 4455667899988888 333 4789999999998653
No 63
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=24.50 E-value=4e+02 Score=27.51 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCCEEEEEeCC--Cc---cccc-ccHHHHHHHHHHhhhccccCCCceEEEEeeecccccccc-CCCchhhHHHHHHHHHH
Q 011532 68 SDIEVMVAIPN--KD---LLDM-NSYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAY-NGSFLNTTFPALQNIQN 140 (483)
Q Consensus 68 tgi~V~lGV~n--~~---~~~~-~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~-~~~~~~~Lv~am~~i~~ 140 (483)
.++||++.|-- .. ...+ ++.+.-.+.++ ++..++. .-.+.+|-+==|-..... .......++..|+++|+
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~--~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~ 145 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLR--KYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELRE 145 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHH--HcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHH
Confidence 57999988742 21 2223 34333233322 3333321 123455555444322100 00113568889999999
Q ss_pred HHHhcC
Q 011532 141 ALNEAG 146 (483)
Q Consensus 141 aL~~~g 146 (483)
+|++.+
T Consensus 146 ~l~~~~ 151 (362)
T cd02872 146 AFEPEA 151 (362)
T ss_pred HHHhhC
Confidence 999873
No 64
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=24.07 E-value=1.5e+02 Score=26.94 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCEEEEc--c--------CC---hhHHHHHhcCCCEEEE
Q 011532 38 KTIVQMLKDNGISKVKLF--D--------AH---QGTMIALAGSDIEVMV 74 (483)
Q Consensus 38 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~a~tgi~V~l 74 (483)
+++.+.++.+|++.|+++ . .. ..+|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 345566677899988887 3 33 3689999999999753
No 65
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=23.96 E-value=2.7e+02 Score=28.16 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=49.8
Q ss_pred hhHHHHHhcCCCEEEEEeCCCc--------cccc-ccHHHHHHHHHHhhhccccCCCceEEEEeeeccccccccCCCchh
Q 011532 59 QGTMIALAGSDIEVMVAIPNKD--------LLDM-NSYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLN 129 (483)
Q Consensus 59 ~~vL~A~a~tgi~V~lGV~n~~--------~~~~-~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~ 129 (483)
+.++.++++.|+||++.|.+.. ...+ +++.+ ++-+.++|..++. .-.+.+|-+-=|.+.. +...
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~-r~~fi~~iv~~l~--~~~~DGidiDwE~~~~----~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEA-RQRLINNILALAK--KYGYDGVNIDFENVPP----EDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHH-HHHHHHHHHHHHH--HhCCCcEEEecccCCH----HHHH
Confidence 5788888888999999887643 1223 33332 2223334444432 1245567666665531 1145
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 011532 130 TTFPALQNIQNALNEAGV 147 (483)
Q Consensus 130 ~Lv~am~~i~~aL~~~gl 147 (483)
..+.-|+++|.+|++.|+
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 688899999999987664
No 66
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=23.84 E-value=5.5e+02 Score=27.55 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=51.1
Q ss_pred hHHHHHhcCCCEEEEEeCCCccc----------------cc-c-cHHHHHHHHHHhhhccccCCCceEEEEeeecccccc
Q 011532 60 GTMIALAGSDIEVMVAIPNKDLL----------------DM-N-SYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLK 121 (483)
Q Consensus 60 ~vL~A~a~tgi~V~lGV~n~~~~----------------~~-~-~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~ 121 (483)
-.|+++++.|++.+++.-|+-.- .+ . ..++-...+.+ |..++...+.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 47899999999999988875211 12 1 12222233333 333333346799999999999876
Q ss_pred ccCC--C---c-hhhHHHHHHHHHHHHHhcCCCCceEEecccc
Q 011532 122 AYNG--S---F-LNTTFPALQNIQNALNEAGVGDSIKATVPLN 158 (483)
Q Consensus 122 ~~~~--~---~-~~~Lv~am~~i~~aL~~~gl~~~IkVsT~~~ 158 (483)
+..+ + + .++....|+.++++|+++||..+ |..+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 4211 1 1 56778889999999999999754 455544
No 67
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=23.75 E-value=1e+03 Score=26.33 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=51.0
Q ss_pred cCCCEEEEEeCCC--------cc---cccc----c--HHHHHHHHHHhhhccccCCCceEEEEeeeccccccc-----cC
Q 011532 67 GSDIEVMVAIPNK--------DL---LDMN----S--YDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKA-----YN 124 (483)
Q Consensus 67 ~tgi~V~lGV~n~--------~~---~~~~----~--~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~-----~~ 124 (483)
+.+|||+...|-- .. ..+. + .++=.+.+.+-|+.|- +.+..|.+|.+.||+.... +.
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~-~~GI~i~aiT~QNEP~~~~~~~~~~~ 244 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK-KEGIPIWAITPQNEPDNGSDPNYPWP 244 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH-CTT--ESEEESSSSCCGGGSTT-SSC
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH-HCCCCeEEEeccCCCCCCCCCCCCCC
Confidence 4569999999852 11 1121 1 1232345666677774 3468999999999998521 11
Q ss_pred CCc--hhhHHHHHHH-HHHHHHhcCCCCceEEe
Q 011532 125 GSF--LNTTFPALQN-IQNALNEAGVGDSIKAT 154 (483)
Q Consensus 125 ~~~--~~~Lv~am~~-i~~aL~~~gl~~~IkVs 154 (483)
... +++....|++ +.-+|++.+++..+||=
T Consensus 245 s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 245 SMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp --B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 211 5566777776 89999999985457764
No 68
>PRK07198 hypothetical protein; Validated
Probab=23.54 E-value=65 Score=34.49 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=32.6
Q ss_pred HHHHHhCCCCEE-EEccCChhHHHHHhcCCCEEEEEeC
Q 011532 41 VQMLKDNGISKV-KLFDAHQGTMIALAGSDIEVMVAIP 77 (483)
Q Consensus 41 ~~llk~~~~~~V-RiY~~d~~vL~A~a~tgi~V~lGV~ 77 (483)
+|.|+.+|+++| |+...++.-+.++.+.||+|.==|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578899999999 9999999888999999999985554
No 69
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.45 E-value=6.5e+02 Score=23.93 Aligned_cols=129 Identities=9% Similarity=0.085 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCCEEEEccCC---------hhHHHHHhcCCCEEEEE--eCCCccccc-ccHHHHHHHHHHhhhccccC
Q 011532 37 PKTIVQMLKDNGISKVKLFDAH---------QGTMIALAGSDIEVMVA--IPNKDLLDM-NSYDRAKQWVKRNVTRYNFK 104 (483)
Q Consensus 37 ~~~v~~llk~~~~~~VRiY~~d---------~~vL~A~a~tgi~V~lG--V~n~~~~~~-~~~~~A~~Wv~~~v~~y~p~ 104 (483)
..++++.|..+|.++|=+.... .....+++..|+++..- .+.....+. .....+.+|++.+
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 169 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL------- 169 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------
Confidence 3445666666777777655432 12345677788876211 111111111 1233444554321
Q ss_pred CCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCC--CCceEEeccccceeccCCCCCCCCCCcccccchhH
Q 011532 105 GGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGV--GDSIKATVPLNADVYESPENNPYPSFGRFRTDILG 182 (483)
Q Consensus 105 ~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl--~~~IkVsT~~~~~vl~~s~~~~pPS~g~f~~~~~~ 182 (483)
..+++|+..|+.+. .. +.++|++.|+ .+.|.|.+-+....+... +.|...+...+...
T Consensus 170 --~~~~ai~~~~d~~a-----------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~---~~~~ltti~~~~~~ 229 (265)
T cd01543 170 --PKPVGIFACTDARA-----------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICEL---SRPPLSSVEQNAER 229 (265)
T ss_pred --CCCcEEEecChHHH-----------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhcc---CCCCCceeecCHHH
Confidence 23567777776542 11 2345555665 345766654433222121 12444455544433
Q ss_pred HHHHHHHHHH
Q 011532 183 QMTQIVEFLA 192 (483)
Q Consensus 183 ~l~~~ldfL~ 192 (483)
.-+.+++.|.
T Consensus 230 ~g~~a~~~l~ 239 (265)
T cd01543 230 IGYEAAKLLD 239 (265)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 70
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=22.83 E-value=2.4e+02 Score=27.23 Aligned_cols=66 Identities=30% Similarity=0.496 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEccc---ccCCCCCCCCChHHHHHHHHhHHHHHHhc-CCCCCCCCceeEEEEEeeccCcc
Q 011532 244 FDTLVSALKAVGHGDMPMIVGEV---GWPTDGDKNANNGNAYRFYNGLLPKLAAN-KGTPLRPGYIEVYLFGLVDEDAK 318 (483)
Q Consensus 244 vDa~~~a~~k~g~~~~~vvI~ET---GWPS~G~~~as~~na~~y~~~li~~~~s~-~Gtp~rp~~~~~y~F~lFDe~wK 318 (483)
+|.++.+.++.| +.|+|.=. ||...++........+.++..+++.+... ++.| ....|+++||+-.
T Consensus 64 ld~~v~~a~~~g---i~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~------~v~~~el~NEP~~ 133 (281)
T PF00150_consen 64 LDRIVDAAQAYG---IYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNP------PVVGWELWNEPNG 133 (281)
T ss_dssp HHHHHHHHHHTT----EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTT------TTEEEESSSSGCS
T ss_pred HHHHHHHHHhCC---CeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCCC------cEEEEEecCCccc
Confidence 344444555544 66775433 48555555555554455555544444332 1222 2457899999965
No 71
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=22.52 E-value=3.1e+02 Score=25.48 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred hHHHHHhcC--CCEEEEEeCCCcccc---c-ccHHHHHHHHHHhhhccccCCCceEEEEeeeccccccccCCCchhhHHH
Q 011532 60 GTMIALAGS--DIEVMVAIPNKDLLD---M-NSYDRAKQWVKRNVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFP 133 (483)
Q Consensus 60 ~vL~A~a~t--gi~V~lGV~n~~~~~---~-~~~~~A~~Wv~~~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~ 133 (483)
.-++.+++. |+||++.|....... + .+.+..++. .+++..++. .-.+.+|-+==|....... .....++.
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f-~~~~~~~v~--~~~~DGidiD~E~~~~~~~-~~~~~~~~ 128 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAF-ANSLVSFLK--TYGFDGVDIDWEYPGAADN-SDRENFIT 128 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHH-HHHHHHHHH--HcCCCceEEeeeCCCCcCc-cHHHHHHH
Confidence 345666655 999999988643221 2 333332332 223333321 1245566554454321100 11467899
Q ss_pred HHHHHHHHHHhcCC
Q 011532 134 ALQNIQNALNEAGV 147 (483)
Q Consensus 134 am~~i~~aL~~~gl 147 (483)
.|+++|++|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987644
No 72
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=22.41 E-value=7.2e+02 Score=24.10 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHhCCCCEEEEccCC-----------hhHHHHHhcCCCEEEEEeCCCc---cccc---ccHHHHHHHHHH
Q 011532 34 QLPPKTIVQMLKDNGISKVKLFDAH-----------QGTMIALAGSDIEVMVAIPNKD---LLDM---NSYDRAKQWVKR 96 (483)
Q Consensus 34 ~ps~~~v~~llk~~~~~~VRiY~~d-----------~~vL~A~a~tgi~V~lGV~n~~---~~~~---~~~~~A~~Wv~~ 96 (483)
.|++ ..++.||+.++..|=.|=++ +.=++.+...|++|+. |++.. .... +-...|.+=++.
T Consensus 20 ~~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~ 97 (212)
T cd06418 20 QPTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAA 97 (212)
T ss_pred cCCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHH
Confidence 3444 55677788888877667332 2346788899999764 33322 1111 122333333443
Q ss_pred hhhccccCCCceEEEEeeeccccccccCCCchhhHHHHHHHHHHHHHhcCCC
Q 011532 97 NVTRYNFKGGVSIKYVAVGNEPFLKAYNGSFLNTTFPALQNIQNALNEAGVG 148 (483)
Q Consensus 97 ~v~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~i~~aL~~~gl~ 148 (483)
+..--.| ...+.++.|=..... .+....++|+++-+.++|...||.
T Consensus 98 A~~lG~p--~gs~IYfavD~d~~~----~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 98 ARALGFP--PGTIIYFAVDFDALD----DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHHcCCC--CCCEEEEEeecCCCc----chhHHHHHHHHHHHHHHHHhcCCc
Confidence 4333334 356668888766542 334578999999999999998875
No 73
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.55 E-value=1.9e+02 Score=26.00 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCEEEEcc--CC---hhHHHHHhcCCCEEE
Q 011532 39 TIVQMLKDNGISKVKLFD--AH---QGTMIALAGSDIEVM 73 (483)
Q Consensus 39 ~v~~llk~~~~~~VRiY~--~d---~~vL~A~a~tgi~V~ 73 (483)
.+.+.++.+|++.|+++= .. ..+|++|+..|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 344566678999999983 33 578999999999865
No 74
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.74 E-value=3e+02 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=27.1
Q ss_pred CCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Q 011532 19 CVNGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKL 54 (483)
Q Consensus 19 ~~~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRi 54 (483)
....+-|.-...+...++.++|.+.|+..||..-++
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 456677777766667888889999999988865444
No 75
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.50 E-value=6e+02 Score=25.83 Aligned_cols=94 Identities=15% Similarity=0.237 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCCceEEeccccceeccCCCCCCCCCCcccccchhHHHHHHHHHHHhcCCcceeecCcccccCCCCC
Q 011532 134 ALQNIQNALNEAGVGDSIKATVPLNADVYESPENNPYPSFGRFRTDILGQMTQIVEFLAKNNAPFTVNIYPFLSLYGNDD 213 (483)
Q Consensus 134 am~~i~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~f~~~~~~~l~~~ldfL~~~~s~~~vNiyPff~~~~~~~ 213 (483)
+.+++++..++.|..+ +++.... .. +.|+. +.+.++..+..+.+-|+.+|.=+....
T Consensus 114 a~~E~er~v~~~gf~g-~~l~p~~-~~--------~~~~~--------~~~~pi~~~a~~~gvpv~ihtG~~~~~----- 170 (293)
T COG2159 114 AAEELERRVRELGFVG-VKLHPVA-QG--------FYPDD--------PRLYPIYEAAEELGVPVVIHTGAGPGG----- 170 (293)
T ss_pred HHHHHHHHHHhcCceE-EEecccc-cC--------CCCCC--------hHHHHHHHHHHHcCCCEEEEeCCCCCC-----
Confidence 5677777887777644 6554321 01 11211 246788889999999999865443321
Q ss_pred CccccccccCCCceecCCCCccchhhHHHhHHHHHHHHHHcCCCCCCEEEcccc--cCCCCC
Q 011532 214 FPFNYAFFDGGTPIVDSGTGIQYTNVFDANFDTLVSALKAVGHGDMPMIVGEVG--WPTDGD 273 (483)
Q Consensus 214 i~ldyAlf~~~~~~~D~~~~~~y~n~fda~vDa~~~a~~k~g~~~~~vvI~ETG--WPS~G~ 273 (483)
..++.. ..++ + .+|.+ ..+ ||+.+||+++.| +|..-.
T Consensus 171 ~~~~~~-------~~~p--------~---~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 171 AGLEKG-------HSDP--------L---YLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccccC-------CCCc--------h---HHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 111100 0011 0 23433 222 899999999999 887553
No 76
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.28 E-value=2e+02 Score=27.89 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=38.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccC---C-hhHHHHHhcCCCEEEE
Q 011532 23 LGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDA---H-QGTMIALAGSDIEVMV 74 (483)
Q Consensus 23 ~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~---d-~~vL~A~a~tgi~V~l 74 (483)
+.||++.....+ +.+++++.++..|++.|-++.. + ..+.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 467877654443 6788889999999999999742 2 3567778899999763
Done!