BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011535
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/467 (46%), Positives = 286/467 (61%), Gaps = 23/467 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VIN F++
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 67
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L GV SAR FV
Sbjct: 68 TARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFV 127
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L TDI A AL
Sbjct: 128 GWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 186
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
S ++ V++VGRRGP+Q A T KELRE++ + + D + + + +R ++R
Sbjct: 187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARPRKR 244
Query: 261 VYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315
+ ELL + R FFR P L S + +G+ T L+
Sbjct: 245 LMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLE 303
Query: 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISG 374
G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD G+VPN+ GRV+
Sbjct: 304 GIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDV--- 359
Query: 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGL 434
GLY GW+KRGPTG+I T + + T + +DL+ G L S P+PG +
Sbjct: 360 ------PGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG---PRPGSAFI 410
Query: 435 LQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
LLD+R V PV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 411 KALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRL 457
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 184/471 (39%), Positives = 267/471 (56%), Gaps = 28/471 (5%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA + VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I +L TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLXXXXXXXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L +P G R + F F P + V + +
Sbjct: 241 VGKVCKQNIKVL---RGYADREPRPGHRRMVFRFLTSPIEIKGKRK----VERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373
L G G+ A TGE E+L +V++S+GY+ VP GLPFD+ G +PN+ GR I+
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGR----IN 349
Query: 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL---EQGVLASSSGLPKPG 430
G ++ YV GW+KRGPTG+I TN A++TV ++ ++L ++G A P+
Sbjct: 350 GSPNE-----YVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEG--AECKSFPEDH 402
Query: 431 REGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
+ + L R + V + W+ ID+ E+ G +P+ KL + +LL++
Sbjct: 403 ADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRI 453
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/471 (39%), Positives = 268/471 (56%), Gaps = 28/471 (5%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA + VD+++ LPTP+GLVRSGVAPD P+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDQPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I +L TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLXXXXXXXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L +P G R + F F P +E + V + +
Sbjct: 241 VGKVCKQNIKVL---RGYADREPRPGHRRMVFRFLTSP---IEIKGKR-KVERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373
L G G+ A TGE E+L +V++S+GY+ VP GLPFD+ G +PN+ GR I+
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGR----IN 349
Query: 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL---EQGVLASSSGLPKPG 430
G ++ YV GW+KRGPTG+I TN A++TV ++ ++L ++G A P+
Sbjct: 350 GSPNE-----YVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEG--AECKSFPEDH 402
Query: 431 REGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
+ + L R + V + W+ ID+ E+ G +P+ KL + +LL++
Sbjct: 403 ADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRI 453
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%)
Query: 46 QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELR 105
+V + DR GL+ G+ P K V+ + +++ + N +G SL ELR
Sbjct: 147 EVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELR 205
Query: 106 QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA--- 162
+ + V++A G R + PG L + +A +++ N G + + A
Sbjct: 206 RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGK 265
Query: 163 --VILGQGNVALDVARILLR 180
V+LG G+ A+D R +R
Sbjct: 266 HVVVLGGGDTAMDCVRTAIR 285
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 337 MVLKSIGYKSVPVNGLP--FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCG 387
M+ + P+ LP N GI N +G+VL++++G QV GLY CG
Sbjct: 346 MIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNG-QDQVVPGLYACG 397
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57
+V +VG+GP GF A++ Q +V +ID+ P P+
Sbjct: 10 KVVIVGNGPGGFELAKQL---SQTYEVTVIDKEPVPY 43
>pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|A Chain A, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|A Chain A, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|N Chain N, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|A Chain A, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|N Chain N, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|A Chain A, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|A Chain A, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|N Chain N, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 621
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 337 MVLKSIGYKSVPVNGLP--FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCG 387
M+ + P+ LP N GI N +G+V+ +++G+ +V GLY CG
Sbjct: 345 MIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVITHVNGE-DKVVPGLYACG 396
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 328 GEFEDLDCGMVLKSIGYKSV-----PVNGLPFDNHKGIVPN-------IRGRVLKNISGD 375
GEF++L+ +L + +V V GLPFD+ GI + RG + G+
Sbjct: 162 GEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQFRGTLFPGSGGN 221
Query: 376 SSQVENGL 383
+VE+G+
Sbjct: 222 QGEVESGM 229
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59
++ ++G+GP+G TA+ L QV + +R +P G+
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 48
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59
++ ++G+GP+G TA+ L QV + +R +P G+
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,829,817
Number of Sequences: 62578
Number of extensions: 642558
Number of successful extensions: 1625
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 18
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)