Query 011535
Match_columns 483
No_of_seqs 329 out of 2985
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1800 Ferredoxin/adrenodoxin 100.0 3.2E-82 6.9E-87 592.4 32.8 444 17-482 18-466 (468)
2 PLN02852 ferredoxin-NADP+ redu 100.0 1E-76 2.3E-81 603.7 43.9 465 17-483 24-489 (491)
3 PTZ00188 adrenodoxin reductase 100.0 1.8E-73 4E-78 568.8 41.6 439 12-483 32-499 (506)
4 PRK12779 putative bifunctional 100.0 3.5E-41 7.5E-46 369.1 32.0 320 17-418 304-629 (944)
5 PRK12831 putative oxidoreducta 100.0 6.5E-41 1.4E-45 344.8 30.8 319 16-417 137-462 (464)
6 TIGR01316 gltA glutamate synth 100.0 2.5E-40 5.4E-45 340.0 30.6 316 16-415 130-449 (449)
7 PRK12775 putative trifunctiona 100.0 3.6E-40 7.7E-45 364.3 32.9 321 18-419 429-758 (1006)
8 PRK12778 putative bifunctional 100.0 2.6E-39 5.6E-44 352.2 31.7 320 16-417 428-751 (752)
9 PRK11749 dihydropyrimidine deh 100.0 5.7E-38 1.2E-42 324.1 31.8 317 16-418 137-454 (457)
10 PRK12769 putative oxidoreducta 100.0 8E-38 1.7E-42 335.5 32.8 321 17-417 325-653 (654)
11 PRK12814 putative NADPH-depend 100.0 1.4E-37 3E-42 332.3 31.2 315 17-422 191-507 (652)
12 TIGR01318 gltD_gamma_fam gluta 100.0 3.4E-37 7.4E-42 317.8 32.2 318 17-416 139-466 (467)
13 PRK09853 putative selenate red 100.0 1.6E-37 3.5E-42 334.8 30.5 304 17-416 537-842 (1019)
14 PRK12809 putative oxidoreducta 100.0 3.1E-37 6.7E-42 329.6 31.9 321 17-417 308-636 (639)
15 PRK12810 gltD glutamate syntha 100.0 2.8E-36 6.1E-41 312.0 30.0 326 17-419 141-468 (471)
16 TIGR01317 GOGAT_sm_gam glutama 100.0 7.8E-36 1.7E-40 308.8 30.4 335 17-418 141-481 (485)
17 TIGR03315 Se_ygfK putative sel 100.0 7.9E-36 1.7E-40 323.5 29.6 304 17-416 535-840 (1012)
18 COG1252 Ndh NADH dehydrogenase 100.0 2.3E-36 4.9E-41 297.4 20.9 321 18-429 2-345 (405)
19 PRK12770 putative glutamate sy 100.0 7.5E-35 1.6E-39 291.1 30.6 324 6-417 7-351 (352)
20 PRK13984 putative oxidoreducta 100.0 2.6E-34 5.6E-39 306.7 30.0 320 16-417 280-603 (604)
21 PRK12771 putative glutamate sy 100.0 1.1E-33 2.4E-38 299.1 31.4 314 16-421 134-449 (564)
22 COG0493 GltD NADPH-dependent g 100.0 4.1E-34 9E-39 288.8 18.3 326 16-415 120-450 (457)
23 PRK06370 mercuric reductase; V 100.0 4.4E-32 9.6E-37 281.0 31.8 288 18-413 4-333 (463)
24 KOG0399 Glutamate synthase [Am 100.0 6.8E-34 1.5E-38 294.2 17.6 337 13-417 1779-2121(2142)
25 TIGR01421 gluta_reduc_1 glutat 100.0 1.8E-31 3.9E-36 274.7 30.5 283 19-413 2-327 (450)
26 COG0492 TrxB Thioredoxin reduc 100.0 1.8E-31 3.9E-36 257.1 28.4 284 18-418 2-303 (305)
27 TIGR01292 TRX_reduct thioredox 100.0 2.3E-31 5E-36 260.4 28.5 280 20-415 1-300 (300)
28 TIGR02053 MerA mercuric reduct 100.0 2.8E-31 6E-36 275.2 29.8 286 20-413 1-328 (463)
29 COG1249 Lpd Pyruvate/2-oxoglut 100.0 8.5E-31 1.8E-35 264.5 29.9 287 18-413 3-334 (454)
30 PTZ00318 NADH dehydrogenase-li 100.0 1.2E-31 2.7E-36 274.2 24.2 311 17-423 8-356 (424)
31 PRK10262 thioredoxin reductase 100.0 8.5E-31 1.8E-35 258.9 29.0 293 17-418 4-317 (321)
32 PRK06467 dihydrolipoamide dehy 100.0 8.5E-31 1.8E-35 271.2 29.5 286 19-413 4-336 (471)
33 TIGR01424 gluta_reduc_2 glutat 100.0 1.4E-30 3E-35 268.3 29.7 281 19-413 2-325 (446)
34 PRK06116 glutathione reductase 100.0 1.6E-30 3.5E-35 268.6 28.9 282 19-413 4-327 (450)
35 PRK05249 soluble pyridine nucl 100.0 2.5E-30 5.5E-35 268.1 29.1 285 18-413 4-334 (461)
36 TIGR03143 AhpF_homolog putativ 100.0 5.8E-30 1.2E-34 269.6 30.8 285 19-418 4-311 (555)
37 TIGR03140 AhpF alkyl hydropero 100.0 4E-30 8.8E-35 268.9 29.3 287 17-417 210-514 (515)
38 PLN02507 glutathione reductase 100.0 2.4E-30 5.2E-35 268.9 27.1 284 17-413 23-362 (499)
39 PRK15317 alkyl hydroperoxide r 100.0 5.9E-30 1.3E-34 267.9 30.1 288 17-418 209-514 (517)
40 PRK06416 dihydrolipoamide dehy 100.0 9.4E-30 2E-34 263.8 30.6 284 18-413 3-333 (462)
41 TIGR03169 Nterm_to_SelD pyridi 100.0 7.2E-31 1.6E-35 264.1 21.6 300 21-423 1-318 (364)
42 PRK07251 pyridine nucleotide-d 100.0 1.1E-29 2.3E-34 261.5 30.2 283 19-413 3-315 (438)
43 PRK09564 coenzyme A disulfide 100.0 8.3E-31 1.8E-35 270.6 21.9 289 20-413 1-316 (444)
44 PRK08010 pyridine nucleotide-d 100.0 9.7E-30 2.1E-34 262.0 29.1 283 19-413 3-316 (441)
45 PLN02546 glutathione reductase 100.0 6.8E-30 1.5E-34 266.8 27.2 283 19-413 79-412 (558)
46 PRK04965 NADH:flavorubredoxin 100.0 7E-30 1.5E-34 257.8 24.6 287 20-413 3-301 (377)
47 TIGR01423 trypano_reduc trypan 100.0 2.4E-29 5.2E-34 259.8 28.7 287 18-413 2-350 (486)
48 PRK14989 nitrite reductase sub 100.0 4.8E-30 1E-34 279.1 23.9 319 19-450 3-335 (847)
49 PRK07845 flavoprotein disulfid 100.0 4.5E-29 9.8E-34 258.2 29.8 284 19-413 1-336 (466)
50 PRK06115 dihydrolipoamide dehy 100.0 4.8E-29 1E-33 258.0 29.5 286 19-413 3-337 (466)
51 PRK13512 coenzyme A disulfide 100.0 6.4E-30 1.4E-34 262.6 22.4 284 20-413 2-311 (438)
52 PRK06567 putative bifunctional 100.0 3.1E-29 6.8E-34 267.2 27.7 319 16-419 380-773 (1028)
53 PRK06912 acoL dihydrolipoamide 100.0 8.1E-29 1.7E-33 256.0 30.1 283 20-413 1-329 (458)
54 PRK07818 dihydrolipoamide dehy 100.0 6.2E-29 1.4E-33 257.6 28.6 286 19-413 4-335 (466)
55 PRK06292 dihydrolipoamide dehy 100.0 1.2E-28 2.7E-33 255.4 30.1 285 18-414 2-331 (460)
56 PTZ00058 glutathione reductase 100.0 1.4E-28 3E-33 256.7 30.1 283 18-413 47-431 (561)
57 PRK07846 mycothione reductase; 100.0 7.1E-29 1.5E-33 255.3 27.4 280 20-413 2-324 (451)
58 TIGR02374 nitri_red_nirB nitri 100.0 1.7E-29 3.6E-34 275.3 22.8 316 22-452 1-329 (785)
59 PRK13748 putative mercuric red 100.0 1.7E-28 3.7E-33 260.5 29.9 281 18-412 97-426 (561)
60 PRK05976 dihydrolipoamide dehy 100.0 2.2E-28 4.9E-33 253.8 30.1 284 18-412 3-341 (472)
61 PRK14694 putative mercuric red 100.0 3.5E-28 7.6E-33 252.0 30.5 282 16-412 3-333 (468)
62 PRK06327 dihydrolipoamide dehy 100.0 2.4E-28 5.1E-33 253.6 28.9 288 19-413 4-346 (475)
63 TIGR01350 lipoamide_DH dihydro 100.0 2.6E-28 5.6E-33 253.2 29.1 285 20-414 2-332 (461)
64 PRK09754 phenylpropionate diox 100.0 4.4E-29 9.6E-34 253.4 21.5 289 18-413 2-308 (396)
65 TIGR01438 TGR thioredoxin and 100.0 7.5E-28 1.6E-32 249.3 29.3 286 19-413 2-343 (484)
66 PRK14727 putative mercuric red 100.0 1.2E-27 2.7E-32 248.3 29.4 283 18-413 15-345 (479)
67 PTZ00052 thioredoxin reductase 100.0 5.7E-27 1.2E-31 243.9 29.8 282 19-413 5-340 (499)
68 PTZ00153 lipoamide dehydrogena 100.0 2.4E-26 5.2E-31 243.0 30.9 301 19-413 116-494 (659)
69 TIGR03452 mycothione_red mycot 100.0 1E-26 2.2E-31 239.6 26.5 281 19-413 2-327 (452)
70 KOG0404 Thioredoxin reductase 100.0 1.7E-26 3.7E-31 202.7 22.1 291 19-416 8-319 (322)
71 TIGR01372 soxA sarcosine oxida 99.9 9.5E-26 2.1E-30 251.4 27.8 281 19-417 163-473 (985)
72 KOG0405 Pyridine nucleotide-di 99.9 6.1E-25 1.3E-29 204.8 23.1 285 18-414 19-350 (478)
73 COG3634 AhpF Alkyl hydroperoxi 99.9 1.4E-25 2.9E-30 209.0 18.4 285 17-416 209-515 (520)
74 KOG1336 Monodehydroascorbate/f 99.9 2.4E-25 5.1E-30 217.5 20.5 271 18-393 73-353 (478)
75 COG1251 NirB NAD(P)H-nitrite r 99.9 2.1E-25 4.5E-30 227.4 19.4 319 19-452 3-334 (793)
76 KOG2495 NADH-dehydrogenase (ub 99.9 2.9E-25 6.3E-30 212.8 16.7 316 17-420 53-401 (491)
77 PLN02172 flavin-containing mon 99.9 1.5E-23 3.2E-28 215.0 26.7 163 17-214 8-238 (461)
78 KOG1335 Dihydrolipoamide dehyd 99.9 9.9E-24 2.1E-28 199.1 22.6 289 18-413 38-376 (506)
79 TIGR03385 CoA_CoA_reduc CoA-di 99.9 1.4E-23 3E-28 215.6 22.7 275 33-413 1-303 (427)
80 PF00743 FMO-like: Flavin-bind 99.9 6.2E-22 1.3E-26 205.6 21.3 163 19-216 1-219 (531)
81 KOG4716 Thioredoxin reductase 99.9 2.9E-21 6.3E-26 179.6 19.8 292 16-413 16-364 (503)
82 PF13738 Pyr_redox_3: Pyridine 99.8 2.2E-18 4.7E-23 158.7 14.4 156 23-214 1-201 (203)
83 KOG1399 Flavin-containing mono 99.8 2.7E-17 5.8E-22 166.0 20.0 149 18-180 5-207 (448)
84 COG0446 HcaD Uncharacterized N 99.8 4.6E-17 1E-21 166.4 20.6 289 22-413 1-309 (415)
85 COG2072 TrkA Predicted flavopr 99.7 1.1E-16 2.3E-21 163.8 17.6 166 16-216 5-211 (443)
86 COG1148 HdrA Heterodisulfide r 99.7 1.7E-15 3.7E-20 147.8 20.6 120 280-419 427-548 (622)
87 PF13434 K_oxygenase: L-lysine 99.6 1.6E-15 3.5E-20 149.8 14.2 268 20-345 3-340 (341)
88 COG3486 IucD Lysine/ornithine 99.6 1.4E-12 2.9E-17 126.0 24.8 336 17-418 3-413 (436)
89 KOG1346 Programmed cell death 99.6 1.4E-14 2.9E-19 138.8 10.7 298 18-413 177-518 (659)
90 KOG2755 Oxidoreductase [Genera 99.5 3.8E-14 8.3E-19 128.2 9.6 171 21-228 1-180 (334)
91 PF07992 Pyr_redox_2: Pyridine 99.5 1.3E-14 2.7E-19 133.3 3.1 105 21-128 1-130 (201)
92 KOG3851 Sulfide:quinone oxidor 99.4 1.2E-12 2.6E-17 121.8 9.4 117 280-420 248-365 (446)
93 COG4529 Uncharacterized protei 99.4 2.2E-10 4.9E-15 113.9 24.4 44 19-62 1-45 (474)
94 PRK05329 anaerobic glycerol-3- 99.3 1.1E-10 2.4E-15 118.1 17.9 114 280-415 271-420 (422)
95 COG0493 GltD NADPH-dependent g 99.3 3.8E-12 8.2E-17 129.4 6.2 418 19-482 5-455 (457)
96 PRK09897 hypothetical protein; 99.1 2.7E-09 5.9E-14 111.1 18.7 182 19-215 1-247 (534)
97 COG2081 Predicted flavoprotein 98.9 1.8E-08 3.9E-13 98.1 13.0 98 18-117 2-165 (408)
98 PF03486 HI0933_like: HI0933-l 98.8 2E-08 4.4E-13 101.5 10.5 97 20-118 1-165 (409)
99 TIGR03378 glycerol3P_GlpB glyc 98.8 1.8E-06 3.9E-11 86.7 23.2 33 20-54 1-33 (419)
100 PRK04176 ribulose-1,5-biphosph 98.7 8.5E-08 1.8E-12 91.2 11.8 90 4-95 9-127 (257)
101 PF00070 Pyr_redox: Pyridine n 98.7 1.5E-07 3.3E-12 72.5 8.8 79 161-311 1-79 (80)
102 TIGR00292 thiazole biosynthesi 98.6 3.9E-07 8.5E-12 86.4 10.9 53 4-58 5-58 (254)
103 COG1635 THI4 Ribulose 1,5-bisp 98.6 2.8E-07 6.2E-12 82.3 8.9 42 18-61 29-70 (262)
104 PF01946 Thi4: Thi4 family; PD 98.5 7.7E-07 1.7E-11 80.1 10.0 44 18-63 16-59 (230)
105 COG0644 FixC Dehydrogenases (f 98.5 1.1E-06 2.3E-11 89.5 12.0 99 18-118 2-151 (396)
106 PRK12842 putative succinate de 98.4 6.6E-07 1.4E-11 95.4 9.4 41 18-60 8-48 (574)
107 PF13450 NAD_binding_8: NAD(P) 98.4 3.4E-07 7.4E-12 67.9 4.9 37 24-62 1-37 (68)
108 TIGR02032 GG-red-SF geranylger 98.4 1.5E-06 3.3E-11 84.4 10.8 97 20-118 1-147 (295)
109 PLN02463 lycopene beta cyclase 98.4 4.8E-06 1E-10 85.6 14.5 100 17-118 26-168 (447)
110 PLN02661 Putative thiazole syn 98.4 2.8E-06 6.1E-11 83.2 12.1 40 18-58 91-130 (357)
111 PF00070 Pyr_redox: Pyridine n 98.4 4.7E-06 1E-10 64.2 10.7 65 21-97 1-65 (80)
112 COG3075 GlpB Anaerobic glycero 98.3 3.3E-05 7.2E-10 73.3 16.8 33 19-53 2-34 (421)
113 PRK04176 ribulose-1,5-biphosph 98.3 2.9E-05 6.3E-10 73.9 16.7 205 160-417 26-256 (257)
114 PRK10157 putative oxidoreducta 98.3 4.7E-06 1E-10 85.7 11.6 38 18-57 4-41 (428)
115 PRK10015 oxidoreductase; Provi 98.3 7.8E-06 1.7E-10 84.0 12.3 37 18-56 4-40 (429)
116 PRK06847 hypothetical protein; 98.3 9.8E-06 2.1E-10 81.9 12.8 36 18-55 3-38 (375)
117 TIGR01790 carotene-cycl lycope 98.2 9.4E-06 2E-10 82.4 11.1 96 21-118 1-140 (388)
118 TIGR00275 flavoprotein, HI0933 98.2 1.1E-05 2.5E-10 82.1 11.6 34 23-58 1-34 (400)
119 COG0029 NadB Aspartate oxidase 98.2 4.4E-05 9.5E-10 76.6 14.6 32 21-55 9-40 (518)
120 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1.9E-05 4.2E-10 80.7 12.4 93 17-122 171-274 (454)
121 TIGR01350 lipoamide_DH dihydro 98.1 7.5E-05 1.6E-09 77.7 16.4 92 18-122 169-271 (461)
122 COG1232 HemY Protoporphyrinoge 98.1 3.5E-06 7.6E-11 85.3 5.8 43 20-62 1-43 (444)
123 PRK07843 3-ketosteroid-delta-1 98.1 1.2E-05 2.7E-10 85.3 10.0 40 18-59 6-45 (557)
124 PRK07251 pyridine nucleotide-d 98.1 3.4E-05 7.3E-10 79.7 12.7 91 18-121 156-254 (438)
125 PRK08255 salicylyl-CoA 5-hydro 98.1 1.6E-05 3.5E-10 87.5 10.0 36 20-55 1-36 (765)
126 TIGR02028 ChlP geranylgeranyl 98.0 3.4E-05 7.4E-10 78.5 11.5 34 20-55 1-34 (398)
127 PRK06834 hypothetical protein; 98.0 4.5E-05 9.7E-10 79.7 12.6 36 18-55 2-37 (488)
128 TIGR02023 BchP-ChlP geranylger 98.0 5E-05 1.1E-09 77.1 12.4 32 20-53 1-32 (388)
129 PRK07608 ubiquinone biosynthes 98.0 3.1E-05 6.8E-10 78.6 10.8 36 19-56 5-40 (388)
130 PRK06184 hypothetical protein; 98.0 4.4E-05 9.4E-10 80.3 12.2 36 19-56 3-38 (502)
131 COG3349 Uncharacterized conser 98.0 1.3E-05 2.8E-10 81.2 7.1 45 20-66 1-45 (485)
132 PRK11883 protoporphyrinogen ox 98.0 8.4E-06 1.8E-10 84.5 6.0 43 20-62 1-43 (451)
133 PRK05976 dihydrolipoamide dehy 98.0 6.7E-05 1.5E-09 78.3 12.7 89 18-118 179-280 (472)
134 PLN02697 lycopene epsilon cycl 98.0 7E-05 1.5E-09 78.4 12.3 34 18-53 107-140 (529)
135 PRK05192 tRNA uridine 5-carbox 98.0 6.6E-05 1.4E-09 78.9 11.9 35 18-54 3-37 (618)
136 PRK04965 NADH:flavorubredoxin 98.0 7E-05 1.5E-09 75.8 11.7 90 18-118 140-238 (377)
137 PRK06912 acoL dihydrolipoamide 97.9 9.8E-05 2.1E-09 76.7 12.9 92 18-122 169-270 (458)
138 PRK06327 dihydrolipoamide dehy 97.9 0.00032 6.9E-09 73.2 16.7 92 18-122 182-286 (475)
139 PRK06134 putative FAD-binding 97.9 0.00024 5.2E-09 76.0 15.9 40 18-59 11-50 (581)
140 PRK06416 dihydrolipoamide dehy 97.9 8.9E-05 1.9E-09 77.2 12.3 89 18-118 171-271 (462)
141 TIGR00292 thiazole biosynthesi 97.9 0.00023 4.9E-09 67.6 13.9 202 160-415 22-253 (254)
142 PRK09754 phenylpropionate diox 97.9 7.2E-05 1.6E-09 76.2 11.3 90 18-118 143-240 (396)
143 PRK08244 hypothetical protein; 97.9 0.0001 2.2E-09 77.4 12.5 35 19-55 2-36 (493)
144 TIGR02053 MerA mercuric reduct 97.9 0.00011 2.3E-09 76.6 12.5 91 19-122 166-268 (463)
145 COG1233 Phytoene dehydrogenase 97.9 1.4E-05 2.9E-10 83.6 5.7 42 18-61 2-43 (487)
146 PF01134 GIDA: Glucose inhibit 97.9 0.00011 2.3E-09 73.3 11.6 38 379-418 354-391 (392)
147 KOG0029 Amine oxidase [Seconda 97.9 1.5E-05 3.2E-10 82.7 5.6 46 15-62 11-56 (501)
148 PRK13512 coenzyme A disulfide 97.9 8.4E-05 1.8E-09 76.8 11.0 88 19-118 148-240 (438)
149 PRK07208 hypothetical protein; 97.9 1.8E-05 4E-10 82.7 5.9 42 18-61 3-44 (479)
150 PRK06370 mercuric reductase; V 97.8 0.00016 3.5E-09 75.2 12.6 92 18-122 170-273 (463)
151 PF13454 NAD_binding_9: FAD-NA 97.8 0.00016 3.4E-09 63.4 10.5 33 23-55 1-36 (156)
152 PRK09564 coenzyme A disulfide 97.8 0.00014 3.1E-09 75.2 11.9 90 18-118 148-245 (444)
153 KOG1276 Protoporphyrinogen oxi 97.8 2.6E-05 5.7E-10 76.5 5.8 45 18-62 10-54 (491)
154 PRK08010 pyridine nucleotide-d 97.8 0.00018 4E-09 74.4 12.5 89 18-118 157-253 (441)
155 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00016 3.4E-09 74.5 11.9 90 18-118 136-232 (427)
156 TIGR01421 gluta_reduc_1 glutat 97.8 0.00018 3.8E-09 74.6 12.2 92 18-122 165-267 (450)
157 PRK05249 soluble pyridine nucl 97.8 0.00016 3.5E-09 75.2 11.9 89 18-118 174-271 (461)
158 TIGR01424 gluta_reduc_2 glutat 97.8 0.00018 3.9E-09 74.5 12.1 89 18-118 165-262 (446)
159 PRK14694 putative mercuric red 97.8 0.00022 4.9E-09 74.3 12.3 90 19-122 178-275 (468)
160 PRK13977 myosin-cross-reactive 97.8 3.7E-05 8.1E-10 80.0 6.3 46 16-61 19-66 (576)
161 PRK07818 dihydrolipoamide dehy 97.8 0.00021 4.6E-09 74.4 12.1 88 18-117 171-271 (466)
162 PF12831 FAD_oxidored: FAD dep 97.8 2.7E-05 5.9E-10 80.0 5.2 39 21-61 1-39 (428)
163 TIGR00562 proto_IX_ox protopor 97.8 3.1E-05 6.8E-10 80.6 5.7 43 19-61 2-46 (462)
164 PRK07233 hypothetical protein; 97.8 3E-05 6.5E-10 79.8 5.4 39 21-61 1-39 (434)
165 PRK06116 glutathione reductase 97.7 0.00026 5.7E-09 73.4 12.2 88 18-117 166-263 (450)
166 COG0446 HcaD Uncharacterized N 97.7 0.00016 3.4E-09 73.8 10.5 89 19-118 136-236 (415)
167 PLN02576 protoporphyrinogen ox 97.7 4.1E-05 8.9E-10 80.4 6.1 42 18-61 11-53 (496)
168 COG1252 Ndh NADH dehydrogenase 97.7 0.00014 3.1E-09 72.8 9.3 90 20-119 156-262 (405)
169 PRK06115 dihydrolipoamide dehy 97.7 0.00036 7.7E-09 72.7 12.7 89 18-118 173-275 (466)
170 PF01494 FAD_binding_3: FAD bi 97.7 3.4E-05 7.4E-10 76.8 4.9 35 20-56 2-36 (356)
171 PRK07045 putative monooxygenas 97.7 4E-05 8.7E-10 77.8 5.4 38 17-56 3-40 (388)
172 PRK12416 protoporphyrinogen ox 97.7 4.7E-05 1E-09 79.3 5.9 43 20-62 2-48 (463)
173 TIGR02733 desat_CrtD C-3',4' d 97.7 4.4E-05 9.5E-10 80.2 5.6 40 20-61 2-41 (492)
174 PRK14727 putative mercuric red 97.7 0.00035 7.5E-09 73.0 12.2 87 19-118 188-282 (479)
175 PLN02507 glutathione reductase 97.7 0.00033 7.1E-09 73.5 12.0 88 19-118 203-299 (499)
176 PLN02268 probable polyamine ox 97.7 4.8E-05 1E-09 78.5 5.7 41 20-62 1-41 (435)
177 PLN00093 geranylgeranyl diphos 97.7 4.9E-05 1.1E-09 78.5 5.6 38 15-54 35-72 (450)
178 PRK07846 mycothione reductase; 97.7 0.00034 7.4E-09 72.5 11.8 91 18-122 165-264 (451)
179 PRK07364 2-octaprenyl-6-methox 97.7 4.7E-05 1E-09 78.1 5.5 38 17-56 16-53 (415)
180 PRK13748 putative mercuric red 97.7 0.00032 6.9E-09 75.0 12.0 91 18-122 269-367 (561)
181 PLN02661 Putative thiazole syn 97.7 0.0012 2.5E-08 65.0 14.5 128 280-417 185-329 (357)
182 PRK07845 flavoprotein disulfid 97.7 0.0004 8.7E-09 72.3 12.0 91 19-122 177-276 (466)
183 PRK07236 hypothetical protein; 97.7 6.6E-05 1.4E-09 76.2 5.8 37 17-55 4-40 (386)
184 COG3380 Predicted NAD/FAD-depe 97.6 7.1E-05 1.5E-09 69.3 5.3 39 20-60 2-40 (331)
185 TIGR01438 TGR thioredoxin and 97.6 0.00042 9.1E-09 72.4 11.7 91 18-122 179-281 (484)
186 PRK06753 hypothetical protein; 97.6 5.8E-05 1.3E-09 76.2 5.1 35 20-56 1-35 (373)
187 PRK14989 nitrite reductase sub 97.6 0.00032 7E-09 77.7 11.2 92 18-121 144-246 (847)
188 COG2081 Predicted flavoprotein 97.6 0.0011 2.4E-08 65.2 13.5 129 160-348 4-169 (408)
189 TIGR02374 nitri_red_nirB nitri 97.6 0.00031 6.8E-09 77.6 11.1 90 18-118 139-237 (785)
190 PRK08773 2-octaprenyl-3-methyl 97.6 6.9E-05 1.5E-09 76.2 5.5 37 17-55 4-40 (392)
191 PTZ00318 NADH dehydrogenase-li 97.6 0.00042 9.1E-09 71.2 11.3 89 20-118 174-279 (424)
192 TIGR02734 crtI_fam phytoene de 97.6 5.7E-05 1.2E-09 79.5 5.0 38 22-61 1-38 (502)
193 KOG2415 Electron transfer flav 97.6 5.6E-05 1.2E-09 73.8 4.4 46 19-64 76-125 (621)
194 TIGR02731 phytoene_desat phyto 97.6 6.9E-05 1.5E-09 77.8 5.2 39 21-61 1-39 (453)
195 PRK08163 salicylate hydroxylas 97.6 7.8E-05 1.7E-09 75.9 5.4 37 18-56 3-39 (396)
196 KOG1335 Dihydrolipoamide dehyd 97.6 0.00033 7.2E-09 67.9 9.1 138 17-176 209-361 (506)
197 PTZ00058 glutathione reductase 97.6 0.00057 1.2E-08 72.3 11.9 87 19-117 237-334 (561)
198 PRK07494 2-octaprenyl-6-methox 97.6 8.4E-05 1.8E-09 75.5 5.5 38 17-56 5-42 (388)
199 PRK07333 2-octaprenyl-6-methox 97.6 7.2E-05 1.6E-09 76.3 5.0 36 20-55 2-37 (403)
200 PRK08013 oxidoreductase; Provi 97.6 8.1E-05 1.8E-09 75.9 5.3 36 19-56 3-38 (400)
201 TIGR00031 UDP-GALP_mutase UDP- 97.6 0.0001 2.2E-09 73.9 5.8 40 20-61 2-41 (377)
202 PF03486 HI0933_like: HI0933-l 97.6 0.00038 8.3E-09 70.6 9.9 129 161-348 2-168 (409)
203 PRK06467 dihydrolipoamide dehy 97.6 0.00066 1.4E-08 70.8 11.8 91 18-122 173-276 (471)
204 TIGR03452 mycothione_red mycot 97.6 0.00058 1.3E-08 70.8 11.3 91 18-122 168-267 (452)
205 PRK08849 2-octaprenyl-3-methyl 97.6 8.8E-05 1.9E-09 75.3 5.2 34 19-54 3-36 (384)
206 PRK09126 hypothetical protein; 97.5 9.3E-05 2E-09 75.2 5.2 35 19-55 3-37 (392)
207 TIGR01423 trypano_reduc trypan 97.5 0.00079 1.7E-08 70.3 12.1 89 18-118 186-287 (486)
208 TIGR01988 Ubi-OHases Ubiquinon 97.5 8.9E-05 1.9E-09 75.0 4.9 34 21-56 1-34 (385)
209 PLN02546 glutathione reductase 97.5 0.00082 1.8E-08 71.2 12.2 90 17-118 250-349 (558)
210 PRK05714 2-octaprenyl-3-methyl 97.5 0.00019 4E-09 73.4 7.2 35 19-55 2-36 (405)
211 PRK07190 hypothetical protein; 97.5 0.00011 2.5E-09 76.7 5.6 38 17-56 3-40 (487)
212 COG1635 THI4 Ribulose 1,5-bisp 97.5 0.0025 5.4E-08 57.6 13.1 204 159-416 30-260 (262)
213 PRK05868 hypothetical protein; 97.5 0.00011 2.5E-09 74.1 5.3 36 19-56 1-36 (372)
214 PRK08020 ubiF 2-octaprenyl-3-m 97.5 0.0001 2.3E-09 74.9 5.0 36 17-54 3-38 (391)
215 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 0.00012 2.6E-09 74.4 5.2 35 19-55 2-36 (390)
216 TIGR02730 carot_isom carotene 97.5 0.00014 3E-09 76.4 5.8 41 20-62 1-41 (493)
217 PRK07538 hypothetical protein; 97.5 0.00012 2.6E-09 75.0 5.2 35 20-56 1-35 (413)
218 PRK06292 dihydrolipoamide dehy 97.5 0.00092 2E-08 69.5 11.9 91 18-122 168-270 (460)
219 PTZ00052 thioredoxin reductase 97.5 0.00088 1.9E-08 70.3 11.6 91 18-122 181-280 (499)
220 PLN02568 polyamine oxidase 97.5 0.00018 4E-09 75.8 6.5 45 18-62 4-51 (539)
221 COG0654 UbiH 2-polyprenyl-6-me 97.5 0.00012 2.6E-09 74.4 4.8 33 19-53 2-34 (387)
222 PRK07588 hypothetical protein; 97.5 0.00013 2.9E-09 74.1 5.2 34 20-55 1-34 (391)
223 KOG2960 Protein involved in th 97.5 3.2E-05 6.9E-10 68.7 0.4 58 5-62 61-119 (328)
224 PRK06126 hypothetical protein; 97.5 0.00016 3.4E-09 76.9 5.7 37 17-55 5-41 (545)
225 TIGR01373 soxB sarcosine oxida 97.4 0.00017 3.6E-09 73.8 5.6 49 5-55 16-66 (407)
226 PRK06475 salicylate hydroxylas 97.4 0.00015 3.3E-09 73.9 5.3 34 20-55 3-36 (400)
227 PRK05732 2-octaprenyl-6-methox 97.4 0.00014 3E-09 74.0 4.9 34 18-53 2-38 (395)
228 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00018 3.9E-09 72.5 5.3 41 378-420 328-368 (436)
229 PTZ00153 lipoamide dehydrogena 97.4 0.0012 2.6E-08 71.0 11.9 91 19-122 312-429 (659)
230 TIGR00136 gidA glucose-inhibit 97.4 0.0014 3.1E-08 69.0 12.0 39 379-419 356-394 (617)
231 PLN02529 lysine-specific histo 97.4 0.00021 4.5E-09 77.4 6.0 43 17-61 158-200 (738)
232 PRK06185 hypothetical protein; 97.4 0.00018 3.9E-09 73.5 5.4 36 18-55 5-40 (407)
233 PRK08243 4-hydroxybenzoate 3-m 97.4 0.00018 3.9E-09 73.2 5.2 35 19-55 2-36 (392)
234 PRK01438 murD UDP-N-acetylmura 97.4 0.00063 1.4E-08 71.2 9.3 75 18-118 15-89 (480)
235 PLN02487 zeta-carotene desatur 97.4 0.00021 4.6E-09 75.5 5.7 41 19-61 75-115 (569)
236 TIGR02732 zeta_caro_desat caro 97.4 0.00021 4.5E-09 74.5 5.3 40 21-62 1-40 (474)
237 PRK06617 2-octaprenyl-6-methox 97.4 0.00019 4.2E-09 72.5 4.7 33 20-54 2-34 (374)
238 PRK08132 FAD-dependent oxidore 97.3 0.00025 5.4E-09 75.4 5.5 36 18-55 22-57 (547)
239 PRK08850 2-octaprenyl-6-methox 97.3 0.00023 4.9E-09 72.8 4.9 33 19-53 4-36 (405)
240 PLN02676 polyamine oxidase 97.3 0.00028 6E-09 73.7 5.6 44 17-62 24-68 (487)
241 PF01266 DAO: FAD dependent ox 97.3 0.0003 6.6E-09 70.0 5.7 34 21-56 1-34 (358)
242 TIGR03219 salicylate_mono sali 97.3 0.00026 5.6E-09 72.6 5.2 36 20-56 1-36 (414)
243 TIGR01989 COQ6 Ubiquinone bios 97.3 0.00023 5E-09 73.5 4.9 32 20-53 1-36 (437)
244 COG2907 Predicted NAD/FAD-bind 97.3 0.00021 4.6E-09 68.4 4.1 41 18-61 7-47 (447)
245 KOG0685 Flavin-containing amin 97.3 0.00033 7.1E-09 70.0 5.6 44 17-61 19-62 (498)
246 PLN02328 lysine-specific histo 97.3 0.00031 6.6E-09 76.6 5.8 42 18-61 237-278 (808)
247 PRK10262 thioredoxin reductase 97.3 0.0022 4.7E-08 63.3 11.5 87 18-118 145-247 (321)
248 PRK06183 mhpA 3-(3-hydroxyphen 97.3 0.00035 7.5E-09 74.2 5.9 38 17-56 8-45 (538)
249 PLN02927 antheraxanthin epoxid 97.3 0.00028 6E-09 75.5 5.1 36 17-54 79-114 (668)
250 PRK12409 D-amino acid dehydrog 97.3 0.00034 7.5E-09 71.6 5.7 35 20-56 2-36 (410)
251 TIGR03169 Nterm_to_SelD pyridi 97.3 0.0019 4.2E-08 64.9 10.8 90 18-118 144-242 (364)
252 TIGR01292 TRX_reduct thioredox 97.3 0.0015 3.4E-08 63.4 9.8 32 161-213 2-33 (300)
253 PF05834 Lycopene_cycl: Lycope 97.3 0.00032 6.8E-09 70.9 5.0 36 21-56 1-36 (374)
254 PLN02172 flavin-containing mon 97.3 0.0022 4.9E-08 66.4 11.3 37 158-215 9-45 (461)
255 PLN02612 phytoene desaturase 97.3 0.00043 9.2E-09 73.7 6.1 43 17-61 91-133 (567)
256 PF00890 FAD_binding_2: FAD bi 97.2 0.00028 6E-09 72.4 4.4 36 21-58 1-36 (417)
257 PLN02985 squalene monooxygenas 97.2 0.0004 8.6E-09 73.0 5.6 37 17-55 41-77 (514)
258 KOG1336 Monodehydroascorbate/f 97.2 0.0023 4.9E-08 64.2 10.4 92 19-122 213-315 (478)
259 COG1231 Monoamine oxidase [Ami 97.2 0.0005 1.1E-08 68.7 5.6 43 17-61 5-47 (450)
260 PRK06481 fumarate reductase fl 97.2 0.00044 9.6E-09 72.7 5.6 38 19-58 61-98 (506)
261 TIGR01984 UbiH 2-polyprenyl-6- 97.2 0.00037 7.9E-09 70.6 4.8 34 21-55 1-34 (382)
262 PRK11259 solA N-methyltryptoph 97.2 0.00051 1.1E-08 69.4 5.5 36 19-56 3-38 (376)
263 PRK11445 putative oxidoreducta 97.2 0.00044 9.4E-09 69.3 5.0 33 20-55 2-34 (351)
264 PTZ00367 squalene epoxidase; P 97.2 0.00051 1.1E-08 72.8 5.6 35 18-54 32-66 (567)
265 COG0665 DadA Glycine/D-amino a 97.2 0.00057 1.2E-08 69.2 5.6 38 18-57 3-40 (387)
266 PRK08294 phenol 2-monooxygenas 97.2 0.00047 1E-08 74.4 5.2 36 18-55 31-67 (634)
267 TIGR01377 soxA_mon sarcosine o 97.2 0.00053 1.2E-08 69.3 5.4 35 20-56 1-35 (380)
268 PRK11728 hydroxyglutarate oxid 97.1 0.00054 1.2E-08 69.7 5.3 37 20-56 3-39 (393)
269 PRK06996 hypothetical protein; 97.1 0.00057 1.2E-08 69.6 5.2 41 14-54 6-48 (398)
270 PRK08274 tricarballylate dehyd 97.1 0.00063 1.4E-08 70.9 5.6 58 356-417 398-463 (466)
271 TIGR01789 lycopene_cycl lycope 97.1 0.0006 1.3E-08 68.7 5.2 38 21-58 1-38 (370)
272 PRK05257 malate:quinone oxidor 97.1 0.0007 1.5E-08 70.7 5.5 39 18-56 4-42 (494)
273 PRK07121 hypothetical protein; 97.1 0.00067 1.5E-08 71.2 5.5 38 19-58 20-57 (492)
274 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00063 1.4E-08 69.0 5.0 41 378-420 327-367 (433)
275 TIGR03364 HpnW_proposed FAD de 97.1 0.00076 1.6E-08 67.8 5.5 34 20-55 1-34 (365)
276 PRK13369 glycerol-3-phosphate 97.0 0.00087 1.9E-08 70.5 5.9 39 18-58 5-43 (502)
277 TIGR03329 Phn_aa_oxid putative 97.0 0.00087 1.9E-08 69.7 5.7 37 19-55 24-60 (460)
278 PRK12266 glpD glycerol-3-phosp 97.0 0.00096 2.1E-08 70.2 5.9 39 18-58 5-43 (508)
279 PRK00711 D-amino acid dehydrog 97.0 0.00079 1.7E-08 69.0 5.2 34 20-55 1-34 (416)
280 PRK08641 sdhA succinate dehydr 97.0 0.00088 1.9E-08 71.7 5.6 36 19-56 3-38 (589)
281 PF07992 Pyr_redox_2: Pyridine 97.0 0.0028 6E-08 57.7 8.2 95 280-392 70-199 (201)
282 KOG2820 FAD-dependent oxidored 97.0 0.0042 9.2E-08 59.6 9.1 36 18-55 6-41 (399)
283 COG0562 Glf UDP-galactopyranos 97.0 0.0021 4.5E-08 61.3 6.9 39 20-60 2-40 (374)
284 PRK12837 3-ketosteroid-delta-1 97.0 0.00093 2E-08 70.4 5.2 37 19-58 7-43 (513)
285 PRK05945 sdhA succinate dehydr 97.0 0.001 2.2E-08 71.1 5.5 39 19-57 3-41 (575)
286 PRK08401 L-aspartate oxidase; 96.9 0.00098 2.1E-08 69.4 5.2 34 20-55 2-35 (466)
287 KOG2495 NADH-dehydrogenase (ub 96.9 0.0015 3.2E-08 64.5 5.7 94 19-123 218-332 (491)
288 TIGR03140 AhpF alkyl hydropero 96.9 0.0065 1.4E-07 64.1 11.0 85 18-121 351-451 (515)
289 COG0445 GidA Flavin-dependent 96.9 0.0037 8E-08 63.8 8.5 38 379-418 358-395 (621)
290 PTZ00139 Succinate dehydrogena 96.9 0.0012 2.6E-08 71.0 5.4 37 19-57 29-65 (617)
291 PLN03000 amine oxidase 96.9 0.0013 2.8E-08 71.9 5.6 42 18-61 183-224 (881)
292 COG0579 Predicted dehydrogenas 96.9 0.0014 3.1E-08 66.2 5.5 40 18-57 2-41 (429)
293 PRK07057 sdhA succinate dehydr 96.9 0.0013 2.9E-08 70.4 5.7 37 17-55 10-46 (591)
294 TIGR01320 mal_quin_oxido malat 96.9 0.0012 2.7E-08 68.8 5.2 36 20-55 1-36 (483)
295 PTZ00383 malate:quinone oxidor 96.9 0.0014 3E-08 68.4 5.5 39 17-55 43-81 (497)
296 PRK01747 mnmC bifunctional tRN 96.9 0.0014 3.1E-08 71.3 5.8 34 20-55 261-294 (662)
297 PRK11101 glpA sn-glycerol-3-ph 96.9 0.0015 3.3E-08 69.3 5.8 35 19-55 6-40 (546)
298 PRK12834 putative FAD-binding 96.9 0.0013 2.9E-08 69.9 5.4 38 19-58 4-43 (549)
299 COG1004 Ugd Predicted UDP-gluc 96.9 0.0011 2.4E-08 65.1 4.3 82 20-117 1-86 (414)
300 PF13738 Pyr_redox_3: Pyridine 96.9 0.00058 1.3E-08 62.4 2.3 33 163-215 1-33 (203)
301 PRK07804 L-aspartate oxidase; 96.9 0.0013 2.9E-08 69.6 5.3 38 18-57 15-52 (541)
302 PRK06452 sdhA succinate dehydr 96.8 0.0015 3.2E-08 69.7 5.6 37 18-56 4-40 (566)
303 PLN02976 amine oxidase 96.8 0.0014 3.1E-08 74.3 5.6 42 18-61 692-733 (1713)
304 TIGR01812 sdhA_frdA_Gneg succi 96.8 0.0013 2.8E-08 70.3 5.2 34 21-56 1-34 (566)
305 PRK12835 3-ketosteroid-delta-1 96.8 0.0015 3.3E-08 69.7 5.5 59 356-418 507-573 (584)
306 TIGR01176 fum_red_Fp fumarate 96.8 0.0015 3.3E-08 69.6 5.4 40 19-58 3-42 (580)
307 PRK12839 hypothetical protein; 96.8 0.0018 4E-08 68.9 5.8 40 17-58 6-45 (572)
308 PRK07803 sdhA succinate dehydr 96.8 0.0016 3.4E-08 70.3 5.3 36 19-56 8-43 (626)
309 PRK08275 putative oxidoreducta 96.8 0.0017 3.6E-08 69.2 5.4 51 366-418 357-407 (554)
310 PRK09231 fumarate reductase fl 96.8 0.0016 3.6E-08 69.5 5.4 39 19-57 4-42 (582)
311 KOG2614 Kynurenine 3-monooxyge 96.8 0.0019 4.1E-08 63.8 5.3 35 19-55 2-36 (420)
312 TIGR01316 gltA glutamate synth 96.8 0.0052 1.1E-07 63.6 8.9 36 18-55 271-306 (449)
313 TIGR01813 flavo_cyto_c flavocy 96.8 0.0018 3.8E-08 67.0 5.3 37 21-58 1-37 (439)
314 PRK12844 3-ketosteroid-delta-1 96.7 0.0019 4E-08 68.8 5.3 60 356-419 487-554 (557)
315 COG2072 TrkA Predicted flavopr 96.7 0.013 2.8E-07 60.5 11.3 37 158-214 7-43 (443)
316 PF13434 K_oxygenase: L-lysine 96.7 0.0037 8.1E-08 62.1 7.1 40 16-55 187-226 (341)
317 PF04820 Trp_halogenase: Trypt 96.7 0.002 4.4E-08 66.6 5.1 36 21-56 1-37 (454)
318 PRK06847 hypothetical protein; 96.7 0.019 4E-07 57.9 12.1 34 159-213 4-37 (375)
319 PRK13339 malate:quinone oxidor 96.7 0.0024 5.2E-08 66.4 5.6 41 17-57 4-44 (497)
320 PLN02464 glycerol-3-phosphate 96.7 0.0024 5.1E-08 68.8 5.7 40 17-58 69-108 (627)
321 PLN00128 Succinate dehydrogena 96.7 0.0021 4.6E-08 69.2 5.3 37 19-57 50-86 (635)
322 PRK09078 sdhA succinate dehydr 96.7 0.0021 4.5E-08 69.0 5.2 36 18-55 11-46 (598)
323 PRK08958 sdhA succinate dehydr 96.7 0.0025 5.3E-08 68.3 5.7 37 18-56 6-42 (588)
324 PRK06069 sdhA succinate dehydr 96.7 0.0024 5.2E-08 68.3 5.6 40 18-57 4-44 (577)
325 TIGR00551 nadB L-aspartate oxi 96.6 0.0024 5.3E-08 66.9 5.4 36 19-57 2-37 (488)
326 TIGR02462 pyranose_ox pyranose 96.6 0.0035 7.7E-08 65.8 6.5 38 20-59 1-38 (544)
327 PRK07364 2-octaprenyl-6-methox 96.6 0.034 7.4E-07 56.9 13.8 35 159-214 18-52 (415)
328 PTZ00363 rab-GDP dissociation 96.6 0.0024 5.2E-08 65.6 5.1 42 18-61 3-44 (443)
329 PF01494 FAD_binding_3: FAD bi 96.6 0.013 2.9E-07 58.1 10.4 61 260-346 112-172 (356)
330 PRK14106 murD UDP-N-acetylmura 96.6 0.0094 2E-07 61.8 9.5 76 18-118 4-79 (450)
331 PRK07045 putative monooxygenas 96.6 0.024 5.2E-07 57.5 12.3 35 160-215 6-40 (388)
332 PRK07573 sdhA succinate dehydr 96.6 0.0025 5.5E-08 68.8 5.3 36 19-56 35-70 (640)
333 PRK12831 putative oxidoreducta 96.6 0.016 3.4E-07 60.4 10.9 35 18-54 280-314 (464)
334 PRK06854 adenylylsulfate reduc 96.6 0.0025 5.4E-08 68.5 5.2 37 19-55 11-47 (608)
335 PRK06175 L-aspartate oxidase; 96.6 0.0024 5.3E-08 65.7 4.9 37 19-58 4-40 (433)
336 PRK08071 L-aspartate oxidase; 96.6 0.0028 6.1E-08 66.7 5.2 37 19-58 3-39 (510)
337 PRK12845 3-ketosteroid-delta-1 96.6 0.0031 6.6E-08 67.1 5.5 38 18-58 15-52 (564)
338 COG0644 FixC Dehydrogenases (f 96.5 0.013 2.9E-07 59.6 9.9 134 161-346 5-152 (396)
339 PRK07395 L-aspartate oxidase; 96.5 0.0032 7E-08 66.8 5.3 38 18-58 8-45 (553)
340 KOG1399 Flavin-containing mono 96.5 0.015 3.2E-07 59.6 9.9 37 158-215 5-41 (448)
341 PRK08626 fumarate reductase fl 96.5 0.0032 6.9E-08 68.2 5.3 36 19-56 5-40 (657)
342 TIGR01470 cysG_Nterm siroheme 96.5 0.011 2.3E-07 54.3 7.9 72 18-117 8-79 (205)
343 PRK12770 putative glutamate sy 96.5 0.017 3.6E-07 57.9 10.0 34 19-54 172-206 (352)
344 PLN02815 L-aspartate oxidase 96.4 0.0039 8.5E-08 66.6 5.4 39 17-58 27-65 (594)
345 TIGR01811 sdhA_Bsu succinate d 96.4 0.003 6.6E-08 67.7 4.6 33 22-56 1-33 (603)
346 PF00732 GMC_oxred_N: GMC oxid 96.4 0.0033 7E-08 61.2 4.2 36 20-56 1-36 (296)
347 PTZ00306 NADH-dependent fumara 96.4 0.0041 8.9E-08 71.8 5.6 39 18-58 408-446 (1167)
348 PRK09853 putative selenate red 96.4 0.015 3.2E-07 65.0 9.6 36 158-214 538-573 (1019)
349 PLN02463 lycopene beta cyclase 96.4 0.034 7.4E-07 57.3 11.7 39 381-419 294-336 (447)
350 PRK15317 alkyl hydroperoxide r 96.4 0.02 4.4E-07 60.5 10.2 83 18-118 350-448 (517)
351 PRK12779 putative bifunctional 96.4 0.01 2.2E-07 66.7 8.3 36 158-214 305-340 (944)
352 PRK06263 sdhA succinate dehydr 96.4 0.0041 8.9E-08 66.1 4.9 34 19-55 7-40 (543)
353 TIGR02032 GG-red-SF geranylger 96.3 0.022 4.8E-07 55.0 9.6 33 161-214 2-34 (295)
354 TIGR02061 aprA adenosine phosp 96.3 0.0046 1E-07 66.2 5.1 42 376-417 402-444 (614)
355 PRK12843 putative FAD-binding 96.3 0.0053 1.1E-07 65.7 5.5 41 18-60 15-55 (578)
356 PF03721 UDPG_MGDP_dh_N: UDP-g 96.3 0.0025 5.4E-08 57.4 2.5 86 20-117 1-86 (185)
357 PLN02852 ferredoxin-NADP+ redu 96.3 0.016 3.6E-07 60.1 8.7 38 158-214 25-62 (491)
358 PRK02705 murD UDP-N-acetylmura 96.3 0.011 2.4E-07 61.4 7.6 78 21-118 2-79 (459)
359 PRK09077 L-aspartate oxidase; 96.3 0.0058 1.3E-07 64.8 5.5 38 18-58 7-44 (536)
360 PRK06184 hypothetical protein; 96.3 0.046 1E-06 57.5 12.2 34 160-214 4-37 (502)
361 PRK11749 dihydropyrimidine deh 96.3 0.029 6.4E-07 58.3 10.6 61 18-94 272-333 (457)
362 PRK06185 hypothetical protein; 96.2 0.05 1.1E-06 55.5 12.2 49 280-346 121-169 (407)
363 PRK08243 4-hydroxybenzoate 3-m 96.2 0.039 8.4E-07 56.1 11.2 34 160-214 3-36 (392)
364 PRK11445 putative oxidoreducta 96.2 0.067 1.4E-06 53.5 12.7 32 161-214 3-34 (351)
365 PRK08773 2-octaprenyl-3-methyl 96.2 0.03 6.6E-07 56.9 10.3 34 159-213 6-39 (392)
366 COG1053 SdhA Succinate dehydro 96.2 0.0067 1.4E-07 64.1 5.4 39 17-57 4-42 (562)
367 KOG0405 Pyridine nucleotide-di 96.2 0.015 3.1E-07 56.2 6.9 97 13-122 183-289 (478)
368 PF01134 GIDA: Glucose inhibit 96.1 0.027 5.9E-07 56.4 9.1 43 280-344 108-150 (392)
369 PRK10157 putative oxidoreducta 96.1 0.046 1E-06 56.3 11.1 38 380-418 294-338 (428)
370 PRK05868 hypothetical protein; 96.1 0.053 1.1E-06 54.7 11.2 34 160-214 2-35 (372)
371 PRK12778 putative bifunctional 96.1 0.035 7.6E-07 61.5 10.7 36 18-55 569-605 (752)
372 PRK10015 oxidoreductase; Provi 96.1 0.045 9.8E-07 56.3 10.9 38 380-418 294-338 (429)
373 PF13454 NAD_binding_9: FAD-NA 96.1 0.044 9.6E-07 47.8 9.3 61 163-239 1-63 (156)
374 KOG2311 NAD/FAD-utilizing prot 96.1 0.0073 1.6E-07 60.5 4.6 35 17-53 26-60 (679)
375 PRK12810 gltD glutamate syntha 96.1 0.037 8E-07 57.7 10.2 37 18-56 280-317 (471)
376 PRK08205 sdhA succinate dehydr 96.0 0.0092 2E-07 63.9 5.3 55 358-416 357-419 (583)
377 COG0654 UbiH 2-polyprenyl-6-me 95.9 0.079 1.7E-06 53.7 11.8 32 160-212 3-34 (387)
378 PRK02106 choline dehydrogenase 95.9 0.0096 2.1E-07 63.6 5.3 36 18-55 4-40 (560)
379 COG0578 GlpA Glycerol-3-phosph 95.9 0.011 2.5E-07 61.2 5.5 40 17-58 10-49 (532)
380 PRK01438 murD UDP-N-acetylmura 95.9 0.033 7.1E-07 58.3 9.2 35 158-213 15-49 (480)
381 PRK07588 hypothetical protein; 95.9 0.12 2.5E-06 52.6 12.7 33 161-214 2-34 (391)
382 PF00890 FAD_binding_2: FAD bi 95.9 0.05 1.1E-06 55.7 10.1 64 258-346 140-203 (417)
383 PRK07512 L-aspartate oxidase; 95.9 0.011 2.3E-07 62.4 5.1 35 17-55 7-41 (513)
384 PRK05192 tRNA uridine 5-carbox 95.9 0.1 2.2E-06 55.5 12.2 35 380-416 359-393 (618)
385 PRK06126 hypothetical protein; 95.8 0.14 3.1E-06 54.4 13.8 50 280-346 139-188 (545)
386 PLN02697 lycopene epsilon cycl 95.8 0.07 1.5E-06 56.2 11.0 38 381-418 372-413 (529)
387 KOG3923 D-aspartate oxidase [A 95.8 0.039 8.5E-07 52.2 8.1 49 18-66 2-62 (342)
388 PRK06475 salicylate hydroxylas 95.8 0.15 3.3E-06 51.9 13.3 34 160-214 3-36 (400)
389 PF12831 FAD_oxidored: FAD dep 95.8 0.0099 2.1E-07 61.2 4.6 47 280-344 102-148 (428)
390 COG0492 TrxB Thioredoxin reduc 95.8 0.051 1.1E-06 53.0 9.2 21 160-180 4-24 (305)
391 TIGR03143 AhpF_homolog putativ 95.8 0.049 1.1E-06 58.1 9.9 61 18-95 142-202 (555)
392 TIGR01318 gltD_gamma_fam gluta 95.8 0.022 4.7E-07 59.3 7.0 36 158-214 140-175 (467)
393 TIGR01813 flavo_cyto_c flavocy 95.8 0.13 2.9E-06 53.0 12.9 49 280-344 142-190 (439)
394 COG4529 Uncharacterized protei 95.8 0.092 2E-06 53.3 11.0 61 160-238 2-64 (474)
395 PRK08244 hypothetical protein; 95.8 0.11 2.4E-06 54.5 12.3 36 381-417 272-312 (493)
396 PRK13800 putative oxidoreducta 95.7 0.011 2.4E-07 66.5 4.8 51 365-417 361-411 (897)
397 PRK06183 mhpA 3-(3-hydroxyphen 95.7 0.11 2.4E-06 55.2 12.2 34 159-213 10-43 (538)
398 COG2509 Uncharacterized FAD-de 95.6 0.13 2.8E-06 51.7 11.1 46 367-415 438-483 (486)
399 PRK09126 hypothetical protein; 95.6 0.074 1.6E-06 54.0 9.9 34 160-214 4-37 (392)
400 KOG1298 Squalene monooxygenase 95.6 0.016 3.5E-07 56.6 4.6 34 18-53 44-77 (509)
401 PRK12809 putative oxidoreducta 95.6 0.032 6.9E-07 60.5 7.6 36 158-214 309-344 (639)
402 PRK07538 hypothetical protein; 95.6 0.11 2.4E-06 53.2 11.1 33 161-214 2-34 (413)
403 PF01266 DAO: FAD dependent ox 95.6 0.053 1.1E-06 53.8 8.6 47 280-348 159-205 (358)
404 PRK07236 hypothetical protein; 95.5 0.15 3.3E-06 51.6 12.0 36 158-214 5-40 (386)
405 PRK06481 fumarate reductase fl 95.5 0.19 4.1E-06 53.0 12.9 51 280-347 202-253 (506)
406 PRK00711 D-amino acid dehydrog 95.5 0.14 3.1E-06 52.3 11.8 20 161-180 2-21 (416)
407 PRK07333 2-octaprenyl-6-methox 95.5 0.086 1.9E-06 53.7 10.0 34 161-214 3-37 (403)
408 TIGR02028 ChlP geranylgeranyl 95.5 0.15 3.2E-06 52.0 11.7 38 380-418 269-311 (398)
409 PRK11101 glpA sn-glycerol-3-ph 95.5 0.15 3.3E-06 54.2 12.0 51 280-346 161-211 (546)
410 PRK06753 hypothetical protein; 95.4 0.17 3.6E-06 51.0 11.8 33 161-214 2-34 (373)
411 PF00743 FMO-like: Flavin-bind 95.4 0.048 1E-06 57.5 8.0 36 17-54 181-216 (531)
412 PRK06834 hypothetical protein; 95.4 0.17 3.8E-06 53.0 12.2 33 160-213 4-36 (488)
413 PRK08274 tricarballylate dehyd 95.4 0.25 5.4E-06 51.5 13.3 48 280-344 143-190 (466)
414 PRK08850 2-octaprenyl-6-methox 95.4 0.17 3.8E-06 51.6 11.9 32 160-212 5-36 (405)
415 PRK05714 2-octaprenyl-3-methyl 95.4 0.15 3.4E-06 51.9 11.5 32 161-213 4-35 (405)
416 TIGR01317 GOGAT_sm_gam glutama 95.4 0.059 1.3E-06 56.4 8.4 36 158-214 142-177 (485)
417 PRK08132 FAD-dependent oxidore 95.4 0.24 5.2E-06 52.8 13.2 34 159-213 23-56 (547)
418 KOG2852 Possible oxidoreductas 95.3 0.0095 2.1E-07 56.0 2.1 42 17-58 8-53 (380)
419 PRK09897 hypothetical protein; 95.3 0.19 4.2E-06 52.9 12.0 21 160-180 2-22 (534)
420 PRK06996 hypothetical protein; 95.2 0.23 5E-06 50.6 12.0 22 159-180 11-32 (398)
421 PRK08163 salicylate hydroxylas 95.2 0.28 6E-06 49.8 12.6 35 159-214 4-38 (396)
422 TIGR01988 Ubi-OHases Ubiquinon 95.2 0.14 3E-06 51.7 10.3 33 161-214 1-33 (385)
423 TIGR03315 Se_ygfK putative sel 95.2 0.07 1.5E-06 60.0 8.6 36 158-214 536-571 (1012)
424 PTZ00188 adrenodoxin reductase 95.2 0.038 8.3E-07 56.9 6.1 38 158-215 38-75 (506)
425 TIGR01790 carotene-cycl lycope 95.2 0.2 4.2E-06 50.8 11.4 33 161-214 1-33 (388)
426 PF13241 NAD_binding_7: Putati 95.2 0.026 5.6E-07 45.5 3.9 34 18-53 6-39 (103)
427 PRK07608 ubiquinone biosynthes 95.1 0.27 5.8E-06 49.8 12.2 34 160-214 6-39 (388)
428 PRK12775 putative trifunctiona 95.1 0.058 1.2E-06 61.4 7.9 36 158-214 429-464 (1006)
429 PRK07190 hypothetical protein; 95.1 0.23 5E-06 52.0 11.9 34 160-214 6-39 (487)
430 TIGR00275 flavoprotein, HI0933 95.1 0.19 4.2E-06 51.2 11.0 18 163-180 1-18 (400)
431 PF06100 Strep_67kDa_ant: Stre 95.1 0.033 7.1E-07 56.8 5.2 42 19-60 2-45 (500)
432 COG1086 Predicted nucleoside-d 95.0 0.027 5.9E-07 58.0 4.4 50 15-64 112-161 (588)
433 TIGR02360 pbenz_hydroxyl 4-hyd 94.9 0.21 4.5E-06 50.7 10.8 34 160-214 3-36 (390)
434 KOG4254 Phytoene desaturase [C 94.9 0.024 5.2E-07 56.6 3.7 41 17-59 12-52 (561)
435 COG1148 HdrA Heterodisulfide r 94.9 0.23 4.9E-06 50.3 10.4 38 158-216 123-160 (622)
436 PRK08849 2-octaprenyl-3-methyl 94.9 0.24 5.2E-06 50.1 11.1 20 161-180 5-24 (384)
437 PRK05732 2-octaprenyl-6-methox 94.9 0.42 9.1E-06 48.4 12.9 21 160-180 4-24 (395)
438 TIGR02023 BchP-ChlP geranylger 94.9 0.24 5.3E-06 50.2 11.1 36 381-417 264-304 (388)
439 KOG0042 Glycerol-3-phosphate d 94.9 0.088 1.9E-06 53.8 7.5 41 18-60 66-106 (680)
440 PRK12769 putative oxidoreducta 94.8 0.19 4.1E-06 54.8 10.8 36 18-55 467-503 (654)
441 PRK12814 putative NADPH-depend 94.8 0.19 4.1E-06 54.7 10.7 36 17-54 321-357 (652)
442 KOG2665 Predicted FAD-dependen 94.8 0.025 5.4E-07 53.9 3.3 40 16-55 45-84 (453)
443 PRK08020 ubiF 2-octaprenyl-3-m 94.8 0.37 8E-06 48.8 12.3 33 160-213 6-38 (391)
444 KOG2404 Fumarate reductase, fl 94.8 0.036 7.9E-07 52.9 4.4 36 21-58 11-46 (477)
445 TIGR02485 CobZ_N-term precorri 94.8 0.025 5.5E-07 58.3 3.7 55 356-414 367-429 (432)
446 TIGR01984 UbiH 2-polyprenyl-6- 94.7 0.38 8.2E-06 48.5 12.1 34 161-214 1-34 (382)
447 PF01210 NAD_Gly3P_dh_N: NAD-d 94.7 0.044 9.6E-07 47.9 4.5 32 21-54 1-32 (157)
448 TIGR00136 gidA glucose-inhibit 94.6 0.33 7.1E-06 51.6 11.4 20 161-180 2-21 (617)
449 TIGR01372 soxA sarcosine oxida 94.6 0.18 3.9E-06 57.6 10.2 81 18-118 316-410 (985)
450 COG3573 Predicted oxidoreducta 94.6 0.066 1.4E-06 51.5 5.6 36 18-55 4-39 (552)
451 PLN02785 Protein HOTHEAD 94.6 0.05 1.1E-06 58.2 5.4 36 18-56 54-89 (587)
452 PLN02985 squalene monooxygenas 94.6 0.28 6.1E-06 51.7 11.0 34 159-213 43-76 (514)
453 KOG4716 Thioredoxin reductase 94.6 0.029 6.3E-07 53.9 3.2 96 9-117 188-298 (503)
454 PRK06719 precorrin-2 dehydroge 94.5 0.067 1.5E-06 46.8 5.1 35 16-52 10-44 (157)
455 PRK08013 oxidoreductase; Provi 94.5 0.39 8.5E-06 48.9 11.5 34 160-214 4-37 (400)
456 COG1206 Gid NAD(FAD)-utilizing 94.4 0.043 9.2E-07 52.7 3.8 37 18-56 2-38 (439)
457 PRK07573 sdhA succinate dehydr 94.4 0.58 1.3E-05 50.7 13.1 49 280-344 182-230 (640)
458 PLN00093 geranylgeranyl diphos 94.4 0.44 9.6E-06 49.3 11.7 37 380-417 308-349 (450)
459 TIGR03219 salicylate_mono sali 94.3 0.39 8.4E-06 49.2 11.1 34 161-214 2-35 (414)
460 PRK15116 sulfur acceptor prote 94.2 0.12 2.7E-06 49.1 6.7 36 18-55 29-65 (268)
461 TIGR01810 betA choline dehydro 94.2 0.045 9.7E-07 58.1 4.1 34 21-55 1-34 (532)
462 PRK07494 2-octaprenyl-6-methox 94.1 0.38 8.2E-06 48.7 10.5 34 160-214 8-41 (388)
463 COG2303 BetA Choline dehydroge 94.1 0.057 1.2E-06 57.2 4.5 37 17-55 5-41 (542)
464 PRK06617 2-octaprenyl-6-methox 94.0 0.55 1.2E-05 47.3 11.4 20 161-180 3-22 (374)
465 COG1251 NirB NAD(P)H-nitrite r 94.0 0.13 2.9E-06 54.6 6.9 92 18-121 144-244 (793)
466 COG0569 TrkA K+ transport syst 93.9 0.076 1.6E-06 49.4 4.6 33 20-54 1-33 (225)
467 PLN02353 probable UDP-glucose 93.8 0.11 2.4E-06 53.8 6.0 37 20-56 2-38 (473)
468 TIGR00551 nadB L-aspartate oxi 93.8 0.68 1.5E-05 48.6 11.9 47 281-345 142-188 (488)
469 PRK06718 precorrin-2 dehydroge 93.8 0.11 2.3E-06 47.5 5.2 34 17-52 8-41 (202)
470 PRK13984 putative oxidoreducta 93.7 0.16 3.5E-06 54.8 7.3 36 158-214 282-317 (604)
471 PRK06567 putative bifunctional 93.7 0.22 4.8E-06 55.5 8.2 35 158-213 382-416 (1028)
472 PF05834 Lycopene_cycl: Lycope 93.7 0.49 1.1E-05 47.8 10.2 36 161-215 1-36 (374)
473 PRK12771 putative glutamate sy 93.5 0.17 3.6E-06 54.2 6.8 37 157-214 135-171 (564)
474 PF02737 3HCDH_N: 3-hydroxyacy 93.4 0.1 2.2E-06 46.7 4.3 33 21-55 1-33 (180)
475 PF01488 Shikimate_DH: Shikima 93.4 0.16 3.6E-06 43.1 5.4 35 17-53 10-45 (135)
476 KOG3855 Monooxygenase involved 93.4 0.1 2.3E-06 51.6 4.6 36 18-53 35-72 (481)
477 cd01483 E1_enzyme_family Super 93.3 0.34 7.3E-06 41.5 7.2 32 21-54 1-33 (143)
478 KOG2844 Dimethylglycine dehydr 93.2 0.46 1E-05 50.1 8.9 34 18-53 38-72 (856)
479 KOG0399 Glutamate synthase [Am 93.1 0.38 8.3E-06 53.4 8.5 41 154-215 1780-1820(2142)
480 TIGR01789 lycopene_cycl lycope 93.0 0.48 1E-05 47.7 8.9 34 161-213 1-34 (370)
481 PF06039 Mqo: Malate:quinone o 93.0 0.16 3.4E-06 51.5 5.2 40 18-57 2-41 (488)
482 PF01262 AlaDh_PNT_C: Alanine 92.9 0.18 4E-06 44.5 5.2 35 18-54 19-53 (168)
483 KOG2853 Possible oxidoreductas 92.8 0.22 4.8E-06 48.1 5.7 38 18-55 85-124 (509)
484 PF01488 Shikimate_DH: Shikima 92.8 0.19 4.1E-06 42.7 4.8 36 158-213 11-46 (135)
485 PTZ00139 Succinate dehydrogena 92.7 1.6 3.4E-05 47.2 12.8 49 280-343 178-226 (617)
486 cd01485 E1-1_like Ubiquitin ac 92.7 0.47 1E-05 43.2 7.5 35 18-54 18-53 (198)
487 KOG2755 Oxidoreductase [Genera 92.6 0.46 1E-05 44.4 7.3 34 162-214 2-35 (334)
488 KOG1238 Glucose dehydrogenase/ 92.6 0.14 3E-06 53.8 4.3 39 17-56 55-93 (623)
489 TIGR03026 NDP-sugDHase nucleot 92.6 0.22 4.8E-06 50.9 5.9 35 20-56 1-35 (411)
490 PF13241 NAD_binding_7: Putati 92.5 0.19 4.2E-06 40.4 4.3 35 158-213 6-40 (103)
491 COG3634 AhpF Alkyl hydroperoxi 92.5 0.12 2.6E-06 50.0 3.4 38 15-54 350-387 (520)
492 PRK12475 thiamine/molybdopteri 92.5 0.45 9.7E-06 47.2 7.7 35 18-54 23-58 (338)
493 PRK06249 2-dehydropantoate 2-r 92.5 0.22 4.8E-06 48.9 5.6 37 16-54 2-38 (313)
494 cd00757 ThiF_MoeB_HesA_family 92.4 0.38 8.2E-06 44.9 6.8 35 18-54 20-55 (228)
495 PRK08294 phenol 2-monooxygenas 92.4 2.1 4.5E-05 46.5 13.3 36 381-417 340-380 (634)
496 KOG2404 Fumarate reductase, fl 92.3 0.68 1.5E-05 44.6 8.2 49 280-345 157-205 (477)
497 PRK13800 putative oxidoreducta 92.3 0.18 3.8E-06 57.0 5.2 36 18-55 12-47 (897)
498 PRK08255 salicylyl-CoA 5-hydro 92.3 0.51 1.1E-05 52.4 8.7 34 161-214 2-36 (765)
499 COG2509 Uncharacterized FAD-de 92.0 0.17 3.7E-06 50.9 4.1 37 17-53 16-55 (486)
500 PRK08275 putative oxidoreducta 91.8 0.3 6.5E-06 52.1 6.0 37 19-55 9-45 (554)
No 1
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.2e-82 Score=592.37 Aligned_cols=444 Identities=53% Similarity=0.856 Sum_probs=399.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
++.++|+|||+||||+|+|..|.++.++++|+|+|+.|.|+|+++||++|+|++.+++.+.|.+.+++.++.|+.|+.+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG 97 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG 97 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec
Confidence 34559999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
+++++.+++..||+||||+|+..++.++|||+++.+|+++++|+.|||++|++..+.+|+ .+++|+|||+||+++|+|+
T Consensus 98 ~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dl-s~~~vvIvG~GNVAlDvAR 176 (468)
T KOG1800|consen 98 RDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDL-SGRKVVIVGNGNVALDVAR 176 (468)
T ss_pred ccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCccc-ccceEEEEccCchhhhhhh
Confidence 999999999999999999999889999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHhcCCcccc-ccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 177 ILLRPTEELA-TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 177 ~L~~~~~~l~-~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
.|..+...|. .|||+..+|..|+.+.+++|+|++||++.+++||++||||++++|+++..+++.++.............
T Consensus 177 iLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~ 256 (468)
T KOG1800|consen 177 ILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQH 256 (468)
T ss_pred hhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCccccccc
Confidence 9999888777 999999999999999999999999999999999999999999999999999988776544444444446
Q ss_pred HHHHHHHHHHHHHHHhc---CCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEE
Q 011535 256 RIQRRVYELLSKAAASA---SSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFED 332 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~---~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~ 332 (483)
|.++|+.+.+.+.+... ........+.+.++|...|.+|. . +++.+.++.+..+.+.. . +.+++|+.++
T Consensus 257 RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~--~-~~~~v~~~~~~~t~l~~----~-~~~~tg~~e~ 328 (468)
T KOG1800|consen 257 RPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAIL--P-GADGVSGVRFQVTILEG----T-QAVPTGAFET 328 (468)
T ss_pred CchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhc--c-CcccccceEEEeeeehh----h-cccccCceEe
Confidence 89999999999887642 12334556789999999999998 3 34458888888877652 1 2456888899
Q ss_pred EecCeEEEeeecCCCCCC-CCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 333 LDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~-~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
++|+++|.++||+..+++ ++||+...|+..|.+|++.+.. ..|+||++|||++||.|+++++|++|..+|+.|
T Consensus 329 ~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~------~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I 402 (468)
T KOG1800|consen 329 LPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG------CSPGLYASGWVKHGPTGVIATTMQDAFEVADTI 402 (468)
T ss_pred eccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec------cCCceEEEeeeccCCcceeeehhhhHHHHHHHH
Confidence 999999999999998877 8999999999999999998432 459999999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhh
Q 011535 412 SEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482 (483)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~ 482 (483)
.+++..+-+.. ...++..++..+++++++|.||++||+.|+.+|+..||+||||+++||||+.+
T Consensus 403 ~qD~~~~~~~s-------s~~~l~~~l~~~~v~~v~w~dWe~I~~~E~~~Gk~~~k~reKf~t~Eeml~~~ 466 (468)
T KOG1800|consen 403 VQDLKIQFLDS-------SSAGLEALLESRGVRVVSWSDWEKIDAKEVARGKGTGKPREKFVTFEEMLRLL 466 (468)
T ss_pred HHHHHHhhccc-------hHHHHHHhhhccCCceecchhHHHhhHHHHhhccccCCchHhcCCHHHHHHHh
Confidence 99998553333 35789999999999999999999999999999999999999999999999875
No 2
>PLN02852 ferredoxin-NADP+ reductase
Probab=100.00 E-value=1e-76 Score=603.74 Aligned_cols=465 Identities=73% Similarity=1.161 Sum_probs=404.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..+++|+|||||||||+||..|+++.++++|+|||+.+.+||+++||++|+|+..+++...+.+++...+++|+.|+.++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 35689999999999999999999733349999999999999999999999999999999999998888899999999999
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
.+++++++...||+||||||+..++.++|||.++++|+++.+|+.||++++++......+..+++|+|||+|++|+|+|+
T Consensus 104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar 183 (491)
T PLN02852 104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCAR 183 (491)
T ss_pred ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHH
Confidence 99999888778999999999966688999999999999999999999999877654444446899999999999999999
Q ss_pred HHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccH
Q 011535 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (483)
Q Consensus 177 ~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
.|.+.+++|..|||++++++.|+.+++++|+|++||++.+++||++|+|+|.+++++++.+++.++..++........++
T Consensus 184 ~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 263 (491)
T PLN02852 184 ILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASR 263 (491)
T ss_pred HHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999888766566555566788
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC-CCceeeccCCceEEEec
Q 011535 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG-PGKQYAVGTGEFEDLDC 335 (483)
Q Consensus 257 ~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~-~g~~~~~~~g~~~~i~~ 335 (483)
.++|..++|.+++...........++|.|+|..+|++|++..+.+++|.++++..+++..+. +|+..++++|+.++++|
T Consensus 264 ~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~ 343 (491)
T PLN02852 264 PKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPC 343 (491)
T ss_pred hhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEEC
Confidence 99999999998753210000124589999999999999831112378999999999987653 56666677888889999
Q ss_pred CeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHH
Q 011535 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 336 D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l 415 (483)
|+||.|+||++.++.+++|+...++..|.+|+|.++.. +.|+.|||||+|||++||.+++++++.+|..++++|.+++
T Consensus 344 D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~--~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 344 GLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSAS--GADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCC--CccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 99999999997666677888878888999999998865 6689999999999999999999999999999999999999
Q ss_pred hcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 416 EQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
..+.+..+.....++...+..+|..+++.+++|.||++||++|+.+|+..||+|+||+++++||+++.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~v~~~~W~~id~~E~~~g~~~g~~r~K~~~~~~ml~~~~ 489 (491)
T PLN02852 422 EQGRLRGVASPPKPGRDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITSIEEMLKAAN 489 (491)
T ss_pred HcCcccCcccCCCCcHHHHHHHHHHcCCCeeCHHHHHHHHHHHHHhccccCCCccccCCHHHHHHHhc
Confidence 87655432111234667899999999999999999999999999999999999999999999999873
No 3
>PTZ00188 adrenodoxin reductase; Provisional
Probab=100.00 E-value=1.8e-73 Score=568.80 Aligned_cols=439 Identities=26% Similarity=0.493 Sum_probs=369.0
Q ss_pred hccCCCCCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEE
Q 011535 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 12 ~~~~~~~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
+......+++|+|||||||||+||.+|++ .+ ++|+|||+.+.+||+++||++|+|+..+.+...+...+...+++|+
T Consensus 32 ~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~ 109 (506)
T PTZ00188 32 FFTNEAKPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFF 109 (506)
T ss_pred cCCCCCCCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEE
Confidence 33444567899999999999999998764 56 9999999999999999999999999999999999988888899999
Q ss_pred eCeEEceEEEecceeeccCEEEEccCCCCCCCCCCC------------CCC----CCCeeecceeeeeecCCCCCC---C
Q 011535 91 GNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIP------------GED----LIGVHSAREFVWWYNGHPDGK---N 151 (483)
Q Consensus 91 ~~~~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ip------------g~~----~~~v~~a~~~~~~~~~~~~~~---~ 151 (483)
.|+.++.+++.+++...||+||+|||+. ++.+| |++ +.|+|++.+|+.|||++|++. .
T Consensus 110 gnv~VG~Dvt~eeL~~~YDAVIlAtGA~---~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~ 186 (506)
T PTZ00188 110 GNVHVGVDLKMEELRNHYNCVIFCCGAS---EVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKA 186 (506)
T ss_pred eeeEecCccCHHHHHhcCCEEEEEcCCC---CCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccc
Confidence 9999999999988888999999999995 23566 665 679999999999999999753 1
Q ss_pred CC---CCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHh
Q 011535 152 LS---PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (483)
Q Consensus 152 ~~---~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~ 228 (483)
.. ..+...++++|||+||+|+|+|+.|++++++|..|||++++|+.|+.+++++|+|++||++.+++||++|||||.
T Consensus 187 ~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~ 266 (506)
T PTZ00188 187 VDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELI 266 (506)
T ss_pred ccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHh
Confidence 21 012245789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHH----HHHHHHHHHHhcCCCCC--CCcceEEEeecCCcceeecccCCCC
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR----VYELLSKAAASASSQPM--LGQRELHFVFFRKPDSFLESNERSG 302 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----~~~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~~~v~~~~~~~g 302 (483)
+++++++.+++.++.+...........+.++| +.+.|.+++.... .+. ...+.|.++|..+|++|. + +++
T Consensus 267 ~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~-~~~~~~~~r~i~l~F~~sP~ei~--~-~~~ 342 (506)
T PTZ00188 267 SLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEK-NKEFYKTYKIIEFIFYFEIRQIR--P-IDG 342 (506)
T ss_pred cCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhcc-CccCCCCceEEEEEccCCceEEE--C-CCC
Confidence 99999999998876531111111223566665 6778877763100 111 246899999999999998 4 357
Q ss_pred ceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCc
Q 011535 303 HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENG 382 (483)
Q Consensus 303 ~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~ 382 (483)
+|.+++++.+++.+ +.. ..+|+.++++||+||.|+||+..+++++||+ .. ..|.+|++.. ..||
T Consensus 343 ~v~~v~~~~n~l~~---~~~--~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd-~~--~~n~~grv~~--------~~~g 406 (506)
T PTZ00188 343 AMKNVELELNKNVP---MSF--SSFKENKVLVTPLVIFATGFKKSNFAENLYN-QS--VQMFKEDIGQ--------HKFA 406 (506)
T ss_pred cEeEEEEEEeeccc---Ccc--CCCCeeEEEEcCEEEEcccccCCCCCCCCcc-cc--CCCCCCcccC--------CCCC
Confidence 99999999998864 221 4577888999999999999999999999998 43 5666788762 2599
Q ss_pred eeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHcc
Q 011535 383 LYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLG 462 (483)
Q Consensus 383 vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g 462 (483)
+|++||+++||.|+|++++.++..+++.|++++... .. .... .+..+|..+++.+++|.||++||++|+++|
T Consensus 407 ~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~d~~~~--~~-----~~~~-~~~~ll~~r~~~~v~~~~W~~Id~~E~~~G 478 (506)
T PTZ00188 407 IFKAGWFDKGPKGNIASQILNSKNSTHLVLNFLQKV--DI-----FFDN-DISSLLKEKQIPYVSFDDWTYLHQLEKQMG 478 (506)
T ss_pred cEEeeecCcCCCceeccCcccHHHHHHHHHHHHhhc--Cc-----ccch-hHHHHHHhcCCCeecHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998762 11 0122 688999999999999999999999999999
Q ss_pred ccCCCCcccccCHHHHHhhhC
Q 011535 463 SLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 463 ~~~~~~r~k~~~~~~~~~~~~ 483 (483)
+..||+|+||++++|||++++
T Consensus 479 ~~~gr~R~K~~~~~eml~~~~ 499 (506)
T PTZ00188 479 AQQNKIAQKFSQTGEVLRILK 499 (506)
T ss_pred cccCCCccccCCHHHHHHHHh
Confidence 999999999999999999874
No 4
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3.5e-41 Score=369.13 Aligned_cols=320 Identities=23% Similarity=0.341 Sum_probs=255.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||+||..|++.| ++|+|||+.+.+||+++||+ |++..++++.....+.++..|++|+.|+.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 45799999999999999999999999 99999999999999999998 9999999998888888888999999999999
Q ss_pred eEEEecceee-ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC-CC--CCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NL--SPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~-~~--~~~~~~~~~vvVIG~G~~g~ 172 (483)
++++++++.. .||+|+||||++.++.+++||.++++|+++.+|....+...... .. ......+++|+|||||++|+
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~ 460 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM 460 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence 9999988765 69999999999778999999999999999999876543211100 00 00112579999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|+.+.+ .++ +|++++|++... +|....+.
T Consensus 461 D~A~ta~R--------------------~Ga-~Vtlv~rr~~~~----------------------------mpa~~~e~ 491 (944)
T PRK12779 461 DAARTAKR--------------------LGG-NVTIVYRRTKSE----------------------------MPARVEEL 491 (944)
T ss_pred HHHHHHHH--------------------cCC-EEEEEEecCccc----------------------------ccccHHHH
Confidence 99999986 566 699999986422 22211111
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccC-CCCceEEEEEeeeeee-CCCCCceeeccCCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALK-GGGPGKQYAVGTGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~-~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~ 330 (483)
...+ +.|++++++..++++. ++ +++++.++++...++. .+.+|+...+.+|+.
T Consensus 492 ---------~~a~--------------eeGV~~~~~~~p~~i~--~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e 546 (944)
T PRK12779 492 ---------HHAL--------------EEGINLAVLRAPREFI--GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEI 546 (944)
T ss_pred ---------HHHH--------------HCCCEEEeCcceEEEE--ecCCCCEEEEEEEEEEEeccccCcCceeeecCCce
Confidence 0111 5699999999999997 42 2346888887766553 344676555556777
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVAS 410 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~ 410 (483)
.+++||+||+|+|++|++.. .....++..+++|.|.+++.. ++|+.|+|||+|||++|+..++ .|+.+|+.+|.+
T Consensus 547 ~~i~aD~VI~AiG~~p~~~l---~~~~~gle~~~~G~I~vd~~~-~~Ts~pgVFAaGD~~~G~~~vv-~Ai~eGr~AA~~ 621 (944)
T PRK12779 547 ERVPVDLVIMALGNTANPIM---KDAEPGLKTNKWGTIEVEKGS-QRTSIKGVYSGGDAARGGSTAI-RAAGDGQAAAKE 621 (944)
T ss_pred EEEECCEEEEcCCcCCChhh---hhcccCceECCCCCEEECCCC-CccCCCCEEEEEcCCCChHHHH-HHHHHHHHHHHH
Confidence 78999999999999997621 223457888889999998654 7899999999999999887777 899999999999
Q ss_pred HHHHHhcC
Q 011535 411 ISEDLEQG 418 (483)
Q Consensus 411 I~~~l~~~ 418 (483)
|..+|.-.
T Consensus 622 I~~~L~~~ 629 (944)
T PRK12779 622 IVGEIPFT 629 (944)
T ss_pred HHHHhccc
Confidence 99998743
No 5
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.5e-41 Score=344.82 Aligned_cols=319 Identities=28% Similarity=0.407 Sum_probs=246.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHH-HHHHHHHHHhcCCeEEEeCeE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~-~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+.+.++|+|||||||||+||.+|++.+ ++|+|||+.+.+||++.|++ |.+..+++ +.....+.++..|++|+.++.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCCE
Confidence 456799999999999999999999999 99999999999999999988 76554444 666666777888999999998
Q ss_pred EceEEEecceee--ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCC-CCCCCCCCCeEEEEcCCchH
Q 011535 95 LGSSVSLSELRQ--LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 95 v~~~~~~~~~~~--~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~vvVIG~G~~g 171 (483)
++.+++++++.. .||+||||||++.++.+++||.++++|+++.+|....+....+.. .......+++|+|||+|++|
T Consensus 214 v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va 293 (464)
T PRK12831 214 VGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA 293 (464)
T ss_pred ECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence 877776665432 499999999996688899999999999999888755432211110 11112367999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|+.+.+ .+.+ |++++|++... ++....+
T Consensus 294 ~d~A~~l~r--------------------~Ga~-Vtlv~r~~~~~----------------------------m~a~~~e 324 (464)
T PRK12831 294 MDAARTALR--------------------LGAE-VHIVYRRSEEE----------------------------LPARVEE 324 (464)
T ss_pred HHHHHHHHH--------------------cCCE-EEEEeecCccc----------------------------CCCCHHH
Confidence 999999986 5655 99999986422 1211111
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeecc-CCc
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVG-TGE 329 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~-~g~ 329 (483)
. +.+. +.||++++...+.++. .+++|++.++++...++.. +.+|+..++. +++
T Consensus 325 ~----------~~a~-------------~eGV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~ 379 (464)
T PRK12831 325 V----------HHAK-------------EEGVIFDLLTNPVEIL--GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGS 379 (464)
T ss_pred H----------HHHH-------------HcCCEEEecccceEEE--ecCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence 0 1111 6799999999999997 4246789999887766542 2345433332 455
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
..+++||+||+|+|+.|+.. +... .|+..+++|++.+++.. ++|+.|+|||+|||..++..++ .|+.+|+.+|
T Consensus 380 ~~~i~~D~Vi~AiG~~p~~~----~~~~~~gl~~~~~G~i~vd~~~-~~Ts~pgVfAaGD~~~g~~~v~-~Ai~~G~~AA 453 (464)
T PRK12831 380 EFVLEVDTVIMSLGTSPNPL----ISSTTKGLKINKRGCIVADEET-GLTSKEGVFAGGDAVTGAATVI-LAMGAGKKAA 453 (464)
T ss_pred eEEEECCEEEECCCCCCChh----hhcccCCceECCCCcEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHHH
Confidence 56899999999999999762 3333 67888888999999865 7899999999999998888777 8999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.+|.++|.+
T Consensus 454 ~~I~~~L~~ 462 (464)
T PRK12831 454 KAIDEYLSK 462 (464)
T ss_pred HHHHHHhcC
Confidence 999999865
No 6
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.5e-40 Score=339.95 Aligned_cols=316 Identities=25% Similarity=0.359 Sum_probs=243.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+.++|+|||||||||++|..|++.+ ++|+|||+.+.+||.+.|++ |.+...+++.....+.+...+++|+.+..+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 346789999999999999999999998 99999999999999999987 766666777776667777789999999888
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCC--CCCCCCCCCCCeEEEEcCCchHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+.+++++++...||+||||||+..++.+++||.+.++|+++.++....+....+ .........+++|+|||+|++|+|
T Consensus 207 ~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 286 (449)
T TIGR01316 207 GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVD 286 (449)
T ss_pred CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHH
Confidence 777776655557999999999866888899999999999988876543322111 011111225789999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|+.+.+ .+.+ |++++|+..... +....
T Consensus 287 ~A~~l~~--------------------~G~~-Vtlv~~~~~~~~----------------------------~~~~~--- 314 (449)
T TIGR01316 287 SARTALR--------------------LGAE-VHCLYRRTREDM----------------------------TARVE--- 314 (449)
T ss_pred HHHHHHH--------------------cCCE-EEEEeecCcccC----------------------------CCCHH---
Confidence 9999986 5654 999999864321 11111
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeecc-CCceE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVG-TGEFE 331 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~-~g~~~ 331 (483)
..+.+. +.||+++++..++++. .++++++.+|++....+.. +.+|+..+.+ +++..
T Consensus 315 -------~~~~l~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~ 372 (449)
T TIGR01316 315 -------EIAHAE-------------EEGVKFHFLCQPVEII--GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAEC 372 (449)
T ss_pred -------HHHHHH-------------hCCCEEEeccCcEEEE--EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceE
Confidence 011221 6799999999999997 4246788888887654432 2245433222 45556
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+++||+||+|+|++|+. .+.+..++..+++|++.+|++ ++|+.|+|||+|||+.++..++ .|+.+|+.+|.+|
T Consensus 373 ~i~~D~Vi~AiG~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~Ts~~~VfA~GD~~~g~~~v~-~Ai~~G~~AA~~I 445 (449)
T TIGR01316 373 KLEADAVIVAIGNGSNP----IMAETTRLKTSERGTIVVDED--QRTSIPGVFAGGDIILGAATVI-RAMGQGKRAAKSI 445 (449)
T ss_pred EEECCEEEECCCCCCCc----hhhhccCcccCCCCeEEeCCC--CccCCCCEEEecCCCCCcHHHH-HHHHHHHHHHHHH
Confidence 89999999999999986 255666888888899999987 7899999999999998887776 8999999999999
Q ss_pred HHHH
Q 011535 412 SEDL 415 (483)
Q Consensus 412 ~~~l 415 (483)
.++|
T Consensus 446 ~~~L 449 (449)
T TIGR01316 446 NEYL 449 (449)
T ss_pred HhhC
Confidence 8875
No 7
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=364.32 Aligned_cols=321 Identities=26% Similarity=0.374 Sum_probs=255.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
+.++|+|||||||||+||..|++++ ++|+|||+.+.+||+++||+ |.+..++++.....+.+...|++|+.++.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 5689999999999999999999999 99999999999999999998 87777888888888888889999999998888
Q ss_pred EEEeccee--eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCC--CCCCCCCCCCCCeEEEEcCCchHHH
Q 011535 98 SVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPD--GKNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 98 ~~~~~~~~--~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+++++++. ..||+||||||++.++.++|||.++++|+++.+|....+.... +.........+++|+|||||++|+|
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D 585 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMD 585 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHH
Confidence 87776653 3699999999997688899999999999999988866553211 1001111236899999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|+.+.+ .|++.|++++|+.....+....|+
T Consensus 586 ~A~~a~r--------------------lGa~~Vtiv~rr~~~em~a~~~e~----------------------------- 616 (1006)
T PRK12775 586 CLRVAKR--------------------LGAPTVRCVYRRSEAEAPARIEEI----------------------------- 616 (1006)
T ss_pred HHHHHHH--------------------cCCCEEEEEeecCcccCCCCHHHH-----------------------------
Confidence 9998886 688889999998654322221111
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED 332 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~ 332 (483)
+.+. +.||+++++..+.++. .+++|+|.++++..+.+. .+.+|+..+..+++..+
T Consensus 617 ---------~~a~-------------eeGI~~~~~~~p~~i~--~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 617 ---------RHAK-------------EEGIDFFFLHSPVEIY--VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred ---------HHHH-------------hCCCEEEecCCcEEEE--eCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 1111 6799999999999997 435789999998876654 23456655555666678
Q ss_pred EecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC----CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 333 LDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI----SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~----~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
++||+||+|+|++|+... +....++.++++|.+.+++ .. ++|++|+|||+||+++|+..++ .|+.+|+.+|
T Consensus 673 i~~D~Vi~AiG~~p~~~~---~~~~~gl~l~~~G~I~vd~~~v~~~-~~Ts~pgVFAaGDv~~G~~~vv-~Ai~~Gr~AA 747 (1006)
T PRK12775 673 LECDTVIYALGTKANPII---TQSTPGLALNKWGNIAADDGKLEST-QSTNLPGVFAGGDIVTGGATVI-LAMGAGRRAA 747 (1006)
T ss_pred EEcCEEEECCCcCCChhh---hhccCCcccCCCCcEEeCCCccccC-cCCCCCCEEEecCcCCCccHHH-HHHHHHHHHH
Confidence 999999999999998621 1222467778889998886 23 7899999999999999988777 8999999999
Q ss_pred HHHHHHHhcCc
Q 011535 409 ASISEDLEQGV 419 (483)
Q Consensus 409 ~~I~~~l~~~~ 419 (483)
.+|..+|.++.
T Consensus 748 ~~I~~~L~~~~ 758 (1006)
T PRK12775 748 RSIATYLRLGK 758 (1006)
T ss_pred HHHHHHHhcCC
Confidence 99999998753
No 8
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.6e-39 Score=352.23 Aligned_cols=320 Identities=25% Similarity=0.373 Sum_probs=249.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+.++|+|||||||||+||..|++++ ++|+|||+.+.+||+++||+ |.+..++++.....+.+...|++|+.++.+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 346789999999999999999999999 99999999999999999998 887777777776667777889999999999
Q ss_pred ceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCC-CCCCCCCCCeEEEEcCCchHHH
Q 011535 96 GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 96 ~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+++++++++. ..||+||||||++.++.+++||.+.++|+++.+|....+....+.. .......+++|+|||||++|+|
T Consensus 505 ~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 584 (752)
T PRK12778 505 GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMD 584 (752)
T ss_pred CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHH
Confidence 8888777764 3599999999996688899999999999999988765443222111 0111236799999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|+.+.+ .+.++|++++|++... +|....+.
T Consensus 585 ~A~~~~r--------------------~Ga~~Vtlv~r~~~~~----------------------------~~~~~~e~- 615 (752)
T PRK12778 585 SARTAKR--------------------LGAERVTIVYRRSEEE----------------------------MPARLEEV- 615 (752)
T ss_pred HHHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHH-
Confidence 9999986 6777899999986422 12111110
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeec-cCCceE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAV-GTGEFE 331 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~-~~g~~~ 331 (483)
+.+. +.||++++...+.++. .++++++.++++..+.+.. +.+|+...+ .+++..
T Consensus 616 ---------~~~~-------------~~GV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~ 671 (752)
T PRK12778 616 ---------KHAK-------------EEGIEFLTLHNPIEYL--ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTF 671 (752)
T ss_pred ---------HHHH-------------HcCCEEEecCcceEEE--ECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeE
Confidence 1111 6799999999999997 4346789888887665532 224543222 145556
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+++||+||+|+|++|+... +....++.++++|++.+|++ ++|+.|+|||+|||++++..++ .|+.+|+.+|.+|
T Consensus 672 ~i~~D~Vi~A~G~~p~~~l---~~~~~gl~~~~~G~i~vd~~--~~Ts~~gVfA~GD~~~g~~~vv-~Av~~G~~AA~~I 745 (752)
T PRK12778 672 TVDVDLVIVSVGVSPNPLV---PSSIPGLELNRKGTIVVDEE--MQSSIPGIYAGGDIVRGGATVI-LAMGDGKRAAAAI 745 (752)
T ss_pred EEECCEEEECcCCCCCccc---cccccCceECCCCCEEeCCC--CCCCCCCEEEeCCccCCcHHHH-HHHHHHHHHHHHH
Confidence 8999999999999998621 22234788888899999987 6899999999999998887777 8999999999999
Q ss_pred HHHHhc
Q 011535 412 SEDLEQ 417 (483)
Q Consensus 412 ~~~l~~ 417 (483)
.++|.+
T Consensus 746 ~~~L~~ 751 (752)
T PRK12778 746 DEYLSS 751 (752)
T ss_pred HHHhcc
Confidence 999864
No 9
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=5.7e-38 Score=324.11 Aligned_cols=317 Identities=28% Similarity=0.421 Sum_probs=242.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+...++|+||||||||+++|..|++.+ ++|+|||+.+.+||++.+++ |.+....++...+.+.+...+++|+.++.+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 456789999999999999999999999 99999999999999999988 776667778777778888889999999988
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+.++++++....||+||+|||+..++.+++||.+.++++++.++......... ...+..+++|+|||+|++|+|+|
T Consensus 214 ~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~----~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVA----DYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccc----cccCCCCCeEEEECCCHHHHHHH
Confidence 76666555556799999999996677788999988899988776654432110 01222578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
..|.+ .+.++|+++.|++.... +....+
T Consensus 290 ~~l~~--------------------~G~~~Vtlv~~~~~~~~----------------------------~~~~~~---- 317 (457)
T PRK11749 290 RTAKR--------------------LGAESVTIVYRRGREEM----------------------------PASEEE---- 317 (457)
T ss_pred HHHHH--------------------cCCCeEEEeeecCcccC----------------------------CCCHHH----
Confidence 99986 57779999999864321 111110
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+. +.||+++++..+.++. + +++.+.+|++....+.. +.+|+.....+++.++++
T Consensus 318 ------~~~~~-------------~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~ 375 (457)
T PRK11749 318 ------VEHAK-------------EEGVEFEWLAAPVEIL--G-DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLP 375 (457)
T ss_pred ------HHHHH-------------HCCCEEEecCCcEEEE--e-cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEE
Confidence 11221 6799999999999997 4 34555677776554432 224432211245667899
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
||+||+|+|++|+.. + +....++..+++|++.+++.. ++|+.|+|||+|||+.++..+. .|+.+|+.+|.+|.++
T Consensus 376 ~D~vi~a~G~~p~~~--l-~~~~~gl~~~~~g~i~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA~~I~~~ 450 (457)
T PRK11749 376 ADLVIKAIGQTPNPL--I-LSTTPGLELNRWGTIIADDET-GRTSLPGVFAGGDIVTGAATVV-WAVGDGKDAAEAIHEY 450 (457)
T ss_pred CCEEEECccCCCCch--h-hccccCccCCCCCCEEeCCCC-CccCCCCEEEeCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999851 1 223456778888999999843 7899999999999997776666 7999999999999999
Q ss_pred HhcC
Q 011535 415 LEQG 418 (483)
Q Consensus 415 l~~~ 418 (483)
|.+.
T Consensus 451 l~g~ 454 (457)
T PRK11749 451 LEGA 454 (457)
T ss_pred Hhcc
Confidence 9864
No 10
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=8e-38 Score=335.54 Aligned_cols=321 Identities=23% Similarity=0.345 Sum_probs=245.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||++|..|++.| ++|+|||+.+.+||++.|++ |.+...+++.....+.++..|++|+.++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 45789999999999999999999999 99999999999999999998 8777777887777777888899999999988
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeec----CCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++++.+....||+|++|||+..++.+++||.+.+|++++.+|..... +.............+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 777666655679999999999767778999999999998766542110 1111000011112578999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|..+.+ .++++|++++|++.... |....+
T Consensus 482 d~A~~a~r--------------------~ga~~Vt~i~~~~~~~~----------------------------~~~~~e- 512 (654)
T PRK12769 482 DCVRTALR--------------------HGASNVTCAYRRDEANM----------------------------PGSKKE- 512 (654)
T ss_pred HHHHHHHH--------------------cCCCeEEEeEecCCCCC----------------------------CCCHHH-
Confidence 99998776 67889999999864322 111111
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeecc-CCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVG-TGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~-~g~~ 330 (483)
.+.+. +.||+++++..++++. .++++++.+|++..+.+.. +.+|+..+.. .|+.
T Consensus 513 ---------~~~~~-------------~~Gv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 513 ---------VKNAR-------------EEGANFEFNVQPVALE--LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred ---------HHHHH-------------HcCCeEEeccCcEEEE--ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 11121 6799999999999997 4246889889887655432 3345533222 4566
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC--CCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~--~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
.++++|+||+|+|+.|+.. .+.+..++.++++|.+.++... .++|+.|+|||+||+.+++..++ .|+.+|+.+|
T Consensus 569 ~~i~~D~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv-~Ai~~Gr~AA 644 (654)
T PRK12769 569 FVMPADAVIMAFGFNPHGM---PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVV-TAMAEGRHAA 644 (654)
T ss_pred EEEECCEEEECccCCCCcc---ccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHH-HHHHHHHHHH
Confidence 6899999999999999753 2456678888889999887521 16799999999999998887777 8999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.+|.++|..
T Consensus 645 ~~I~~~L~~ 653 (654)
T PRK12769 645 QGIIDWLGV 653 (654)
T ss_pred HHHHHHhCc
Confidence 999999864
No 11
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=332.29 Aligned_cols=315 Identities=25% Similarity=0.347 Sum_probs=240.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+++++ |.+..++++.....+.+...|++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 45689999999999999999999999 99999999999999999988 7777777777777777778899999998877
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
.++++++....||+||||||+..++.+++||.+.++++++.++........ ....+++|+|||+|++|+|+|.
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~-------~~~~gk~VvVIGgG~~a~e~A~ 340 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT-------ALHPGKKVVVIGGGNTAIDAAR 340 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCC-------cccCCCeEEEECCCHHHHHHHH
Confidence 666665555569999999999656678899999889988776654332110 1226899999999999999999
Q ss_pred HHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccH
Q 011535 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (483)
Q Consensus 177 ~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
.+.+ .+.++|++++|++.... |....+.
T Consensus 341 ~l~~--------------------~Ga~~Vtlv~r~~~~~m----------------------------pa~~~ei---- 368 (652)
T PRK12814 341 TALR--------------------LGAESVTILYRRTREEM----------------------------PANRAEI---- 368 (652)
T ss_pred HHHH--------------------cCCCeEEEeeecCcccC----------------------------CCCHHHH----
Confidence 9886 67789999999874322 2211111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeee-eCCCCCceeecc-CCceEEEe
Q 011535 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVG-TGEFEDLD 334 (483)
Q Consensus 257 ~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l-~~~~~g~~~~~~-~g~~~~i~ 334 (483)
.+.+ +.||+++++..+.++. . +++.+. ++...... ..+.+|+..++. +++..+++
T Consensus 369 -----~~a~--------------~eGV~i~~~~~~~~i~--~-~~~~~~-v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~ 425 (652)
T PRK12814 369 -----EEAL--------------AEGVSLRELAAPVSIE--R-SEGGLE-LTAIKMQQGEPDESGRRRPVPVEGSEFTLQ 425 (652)
T ss_pred -----HHHH--------------HcCCcEEeccCcEEEE--e-cCCeEE-EEEEEEEecccCCCCCCcceecCCceEEEE
Confidence 1111 5689999999999997 4 344432 22221111 112234433322 35556899
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+|.||+|+|+.|+. .+....|+..+.+|++.+|+.. ++|+.|+|||+||++.++..++ .|+.+|+.+|.+|.++
T Consensus 426 ~D~VI~AiG~~p~~----~ll~~~gl~~~~~G~I~vd~~~-~~Ts~pgVfA~GDv~~g~~~v~-~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 426 ADTVISAIGQQVDP----PIAEAAGIGTSRNGTVKVDPET-LQTSVAGVFAGGDCVTGADIAI-NAVEQGKRAAHAIDLF 499 (652)
T ss_pred CCEEEECCCCcCCc----ccccccCccccCCCcEeeCCCC-CcCCCCCEEEcCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999976 3456678888888999999755 8899999999999998887666 7999999999999999
Q ss_pred HhcCcCCC
Q 011535 415 LEQGVLAS 422 (483)
Q Consensus 415 l~~~~~~~ 422 (483)
|.+.++..
T Consensus 500 L~g~~~~~ 507 (652)
T PRK12814 500 LNGKPVTA 507 (652)
T ss_pred HcCCCCCC
Confidence 99876554
No 12
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=3.4e-37 Score=317.79 Aligned_cols=318 Identities=26% Similarity=0.381 Sum_probs=240.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||+||||+++|..|++.+ ++|+|||+.+.+||++++|+ |.+...+++.....+.+...|++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 36689999999999999999999998 99999999999999999997 7777777787777788888999999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeee----ecCCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW----YNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++.+++....||+||+|||+...+.+++||.++++|+++.+|... +.+.............+++++|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 6665555445799999999996666789999999999987665421 111111101111112578999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|..+.+ .+.++||+++|++.... +....+.
T Consensus 296 d~A~~a~~--------------------~Ga~~Vtvv~r~~~~~~----------------------------~~~~~e~ 327 (467)
T TIGR01318 296 DCVRTAIR--------------------LGAASVTCAYRRDEANM----------------------------PGSRREV 327 (467)
T ss_pred HHHHHHHH--------------------cCCCeEEEEEecCcccC----------------------------CCCHHHH
Confidence 99998775 67788999999875322 1111110
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeecc-CCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~-~g~~ 330 (483)
+.+. +.||+++++..+.++. .++++++.++++...... .+.+|+..+.. +++.
T Consensus 328 ----------~~~~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 382 (467)
T TIGR01318 328 ----------ANAR-------------EEGVEFLFNVQPVYIE--CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE 382 (467)
T ss_pred ----------HHHH-------------hcCCEEEecCCcEEEE--ECCCCeEEEEEEEEEEecccCCCCCccceecCCce
Confidence 1111 6799999999999997 424677888887654432 12244422221 4556
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec----CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN----ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEE 406 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~----~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~ 406 (483)
.+++||.||+|+|++|+.. .+....++..+++|++.++ .+ ++|+.|+|||+|||+.++..+. .|+.+|+.
T Consensus 383 ~~i~~D~Vi~a~G~~p~~~---~~~~~~gl~~~~~g~i~vd~~~~~~--~~T~~~gVfa~GD~~~~~~~~~-~Ai~~G~~ 456 (467)
T TIGR01318 383 FVLPADVVIMAFGFQPHAM---PWLAGHGITLDSWGRIITGDVSYLP--YQTTNPKIFAGGDAVRGADLVV-TAVAEGRQ 456 (467)
T ss_pred EEEECCEEEECCcCCCCcc---ccccccCccCCCCCCEEeCCccccC--ccCCCCCEEEECCcCCCccHHH-HHHHHHHH
Confidence 7899999999999999742 2455667888888999988 33 6789999999999988777666 79999999
Q ss_pred HHHHHHHHHh
Q 011535 407 TVASISEDLE 416 (483)
Q Consensus 407 ~a~~I~~~l~ 416 (483)
+|.+|.++|.
T Consensus 457 aA~~i~~~L~ 466 (467)
T TIGR01318 457 AAQGILDWLG 466 (467)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 13
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.6e-37 Score=334.82 Aligned_cols=304 Identities=26% Similarity=0.361 Sum_probs=234.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+||||||||++||..|++.| ++|+|||+.+.+||.+++++ |.+..+.++.....+.+...|++|+.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 46789999999999999999999999 99999999999999999876 888777777766667777789999999877
Q ss_pred eEEEecceee-ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 97 ~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+++++++.. .||+||||||++.+++++++|.+ .+++++.++...++... .....+++|+|||||++|+|+|
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~------~~~~~GKrVVVIGGGnVAmD~A 684 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG------TALKLGKHVVVVGGGNTAMDAA 684 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc------ccccCCCEEEEECCChHHHHHH
Confidence 455555544 49999999999767778889875 57887777665542211 1122579999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
+.+.+ ..++++|++++|+.... +|....+.
T Consensus 685 r~a~R-------------------lgGakeVTLVyRr~~~~----------------------------MPA~~eEl--- 714 (1019)
T PRK09853 685 RAALR-------------------VPGVEKVTVVYRRTKQE----------------------------MPAWREEY--- 714 (1019)
T ss_pred HHHHh-------------------cCCCceEEEEEccCccc----------------------------ccccHHHH---
Confidence 98875 23557999999986422 12211111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+ +.||++++...+.++. . ++++. .....+. .+.+|+...+.+++..+++
T Consensus 715 ------e~Al--------------eeGVe~~~~~~p~~I~--~--dG~l~---~~~~~lg~~d~~Gr~~~v~tg~~~~I~ 767 (1019)
T PRK09853 715 ------EEAL--------------EDGVEFKELLNPESFD--A--DGTLT---CRVMKLGEPDESGRRRPVETGETVTLE 767 (1019)
T ss_pred ------HHHH--------------HcCCEEEeCCceEEEE--c--CCcEE---EEEEEeecccCCCceEEeeCCCeEEEE
Confidence 1111 4689999999999996 3 55543 2222222 1234655555677778999
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
||+||+|+|++|+. .+.+..|+..+++|++.+++. ++|+.|+|||+|||+++|..++ .|+.+|+.+|.+|+..
T Consensus 768 aD~VIvAIG~~Pnt----elle~~GL~ld~~G~I~VDet--lqTs~pgVFAaGD~a~Gp~tvv-~Ai~qGr~AA~nI~~~ 840 (1019)
T PRK09853 768 ADTVITAIGEQVDT----ELLKANGIPLDKKGWPVVDAN--GETSLTNVYMIGDVQRGPSTIV-AAIADARRAADAILSR 840 (1019)
T ss_pred eCEEEECCCCcCCh----hHHHhcCccccCCCCEEeCCC--cccCCCCEEEEeccccCchHHH-HHHHHHHHHHHHHhhh
Confidence 99999999999976 355667888888899999876 7789999999999998888887 8999999999999987
Q ss_pred Hh
Q 011535 415 LE 416 (483)
Q Consensus 415 l~ 416 (483)
+.
T Consensus 841 ~~ 842 (1019)
T PRK09853 841 EG 842 (1019)
T ss_pred cC
Confidence 65
No 14
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=3.1e-37 Score=329.56 Aligned_cols=321 Identities=22% Similarity=0.338 Sum_probs=246.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||++|..|++.| ++|+|||+.+.+||+++||+ |.+...+++.....+.+...|++|+.++.++
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence 35799999999999999999999999 99999999999999999999 7676777777777778888999999999888
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeec----CCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++++.++...||+|++|||+..++.+++||.+.++++++.+|....+ +.......+.....+++|+|||+|++|+
T Consensus 385 ~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~ 464 (639)
T PRK12809 385 RDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTM 464 (639)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 777776666679999999999767778999999999998766653211 1111001111122579999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|..+.+ .++++|++++|++.... |....+.
T Consensus 465 d~a~~~~~--------------------~Ga~~Vt~v~rr~~~~~----------------------------~~~~~e~ 496 (639)
T PRK12809 465 DCLRTSIR--------------------LNAASVTCAYRRDEVSM----------------------------PGSRKEV 496 (639)
T ss_pred HHHHHHHH--------------------cCCCeEEEeeecCcccC----------------------------CCCHHHH
Confidence 99988765 68889999999865432 2211111
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeecc-CCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~-~g~~ 330 (483)
... . +.||+++++..++++. .+++++|.++++..+.+. .+.+|+..+.. .|+.
T Consensus 497 ----------~~a----~---------~eGv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 497 ----------VNA----R---------EEGVEFQFNVQPQYIA--CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred ----------HHH----H---------HcCCeEEeccCCEEEE--ECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 001 1 6799999999999997 434678888887665542 23355533332 4566
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC--CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS--GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~--~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
.++++|+||+|+|++|+.. .+.+..++.++++|++.+++. ..++|+.|+|||+||+.+++..++ .|+.+|+.+|
T Consensus 552 ~~i~aD~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv-~Ai~~Gr~AA 627 (639)
T PRK12809 552 FELPADVLIMAFGFQAHAM---PWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVV-TAMAAGRQAA 627 (639)
T ss_pred EEEECCEEEECcCCCCCcc---ccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHH-HHHHHHHHHH
Confidence 7899999999999999652 245667888888999988752 116799999999999998887766 8999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.+|..+|.+
T Consensus 628 ~~i~~~l~~ 636 (639)
T PRK12809 628 RDMLTLFDT 636 (639)
T ss_pred HHHHHHHhh
Confidence 999999875
No 15
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=2.8e-36 Score=312.04 Aligned_cols=326 Identities=24% Similarity=0.308 Sum_probs=236.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+++++ |.+....++.....+.+...|++++.++.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 45689999999999999999999999 99999999999999999988 7776677777777777788899999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC-CCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
.+++..+....||+||+|||+..++.+++||.+.++|+++.+|....+...... ........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 655444444579999999999667888999999999998876653321110000 0000112578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
..+.+ .+.++|+++.+......... .....+....
T Consensus 298 ~~~~~--------------------~ga~~Vt~~~~~~~~~~~~~--------------------~~~~~~~~~~----- 332 (471)
T PRK12810 298 GTAIR--------------------QGAKSVTQRDIMPMPPSRRN--------------------KNNPWPYWPM----- 332 (471)
T ss_pred HHHHH--------------------cCCCeEEEccccCCCccccc--------------------cccCCcccch-----
Confidence 98775 57778885544321100000 0000000000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEec
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC 335 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~ 335 (483)
....+.+. +.||+++++..+.++. + ++++|.+|++....+. +|+... ..++..+++|
T Consensus 333 ---~~~~~~~~-------------~~GV~i~~~~~~~~i~--~-~~g~v~~V~~~~~~~~---~g~~~~-~~g~~~~i~~ 389 (471)
T PRK12810 333 ---KLEVSNAH-------------EEGVEREFNVQTKEFE--G-ENGKVTGVKVVRTELG---EGDFEP-VEGSEFVLPA 389 (471)
T ss_pred ---HHHHHHHH-------------HcCCeEEeccCceEEE--c-cCCEEEEEEEEEEEec---CCCccc-cCCceEEEEC
Confidence 00011111 6799999999999997 5 4788988888765442 121111 1355568999
Q ss_pred CeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec-CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN-ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 336 D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~-~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
|+||+|+|++|+.. .|.+..++..+++|++.++ ++ ++|+.|+|||+|||+.++..++ .|+.+|+.+|.+|.++
T Consensus 390 D~VI~A~G~~p~~~---~l~~~~gl~~~~~g~i~vd~~~--~~Ts~~gVfa~GD~~~g~~~~~-~Av~~G~~AA~~i~~~ 463 (471)
T PRK12810 390 DLVLLAMGFTGPEA---GLLAQFGVELDERGRVAAPDNA--YQTSNPKVFAAGDMRRGQSLVV-WAIAEGRQAARAIDAY 463 (471)
T ss_pred CEEEECcCcCCCch---hhccccCcccCCCCCEEeCCCc--ccCCCCCEEEccccCCCchhHH-HHHHHHHHHHHHHHHH
Confidence 99999999999752 2446667888888999987 45 7799999999999998776666 7999999999999999
Q ss_pred HhcCc
Q 011535 415 LEQGV 419 (483)
Q Consensus 415 l~~~~ 419 (483)
|.+..
T Consensus 464 L~g~~ 468 (471)
T PRK12810 464 LMGST 468 (471)
T ss_pred HhcCC
Confidence 98753
No 16
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=7.8e-36 Score=308.85 Aligned_cols=335 Identities=24% Similarity=0.299 Sum_probs=239.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+.+||++.|++ |.+...+++.....++++..|++++.++.++
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 34589999999999999999999998 99999999999999999998 7766666676666677788899999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCC---CCCCCCCCCCCCCeEEEEcCCchHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP---DGKNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
.+++.+.....||+|++|||+..++.+++||.++++|+++.++....+... ....+......+++|+|||+|++|+|
T Consensus 218 ~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d 297 (485)
T TIGR01317 218 VDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGAD 297 (485)
T ss_pred CccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHH
Confidence 555444444569999999999668888999999999998876654322110 00011111136799999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|..+.+ .+.++|+++.+.+......... ..+|......
T Consensus 298 ~a~~a~~--------------------~ga~~V~vv~~~~~~~~~~~~~--------------------~~~~~~~~~~- 336 (485)
T TIGR01317 298 CVGTSLR--------------------HGAASVHQFEIMPKPPEARAKD--------------------NPWPEWPRVY- 336 (485)
T ss_pred HHHHHHH--------------------cCCCEEEEEEecCCChhhcccc--------------------cCCCccchhh-
Confidence 9988775 6778999998765421100000 0011100000
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEE-EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeecc-CCceE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELH-FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGEFE 331 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~-~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~-~g~~~ 331 (483)
.....+.+.. ...|+. ++++..+.++. +++++++.++++....+..+.+|+..++. .++..
T Consensus 337 ------e~~~a~~e~~---------~~~gv~~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~ 399 (485)
T TIGR01317 337 ------RVDYAHEEAA---------AHYGRDPREYSILTKEFI--GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE 399 (485)
T ss_pred ------hhHHHHHhhh---------hhcCccceEEecCcEEEE--EcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence 0001111111 123554 35788899997 52347899998877666555566643332 45666
Q ss_pred EEecCeEEEeeecC-CCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYK-SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVAS 410 (483)
Q Consensus 332 ~i~~D~vi~a~G~~-~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~ 410 (483)
+++||+||+|+|+. |+. .+....|+..+.+|++.+++.. ++|+.|+|||+|||+.++..++ .|+.+|+.+|.+
T Consensus 400 ~i~~D~Vi~AiG~~~p~~----~~~~~~gl~~~~~G~i~~~~~~-~~Ts~~gVfAaGD~~~g~~~~~-~Av~~G~~AA~~ 473 (485)
T TIGR01317 400 VFEADLVLLAMGFVGPEQ----ILLDDFGVKKTRRGNISAGYDD-YSTSIPGVFAAGDCRRGQSLIV-WAINEGRKAAAA 473 (485)
T ss_pred EEECCEEEEccCcCCCcc----ccccccCcccCCCCCEEecCCC-ceECCCCEEEeeccCCCcHHHH-HHHHHHHHHHHH
Confidence 89999999999997 654 2556667888888988654433 8899999999999998887777 799999999999
Q ss_pred HHHHHhcC
Q 011535 411 ISEDLEQG 418 (483)
Q Consensus 411 I~~~l~~~ 418 (483)
|.++|.+.
T Consensus 474 i~~~L~g~ 481 (485)
T TIGR01317 474 VDRYLMGS 481 (485)
T ss_pred HHHHHhcC
Confidence 99999875
No 17
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=7.9e-36 Score=323.50 Aligned_cols=304 Identities=26% Similarity=0.363 Sum_probs=227.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||+||..|++.| ++|+|||+.+.+||.+++++ |.+..+.+......+.+...|++|+.++..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~- 610 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP- 610 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc-
Confidence 35689999999999999999999999 99999999999999998876 877666666666666777789999888532
Q ss_pred eEEEecceee-ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 97 ~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
++++.+... .||+||||||++.+++++++|.+ .+++++.++...++.... ....+++|+|||||++|+|+|
T Consensus 611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~~------~~~~GK~VVVIGGGnvAmD~A 682 (1012)
T TIGR03315 611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGPT------INPLGKHVVVVGGGNTAMDAA 682 (1012)
T ss_pred -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhcccc------ccccCCeEEEECCCHHHHHHH
Confidence 234444433 59999999999767778888864 567777666654432211 122589999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
+.+.+ ..++++|++++|+.... +|....+.
T Consensus 683 r~a~R-------------------l~Ga~kVtLVyRr~~~~----------------------------Mpa~~eEl--- 712 (1012)
T TIGR03315 683 RAALR-------------------VPGVEKVTVVYRRTKRY----------------------------MPASREEL--- 712 (1012)
T ss_pred HHHHH-------------------hCCCceEEEEEccCccc----------------------------cccCHHHH---
Confidence 98875 23778999999986422 12111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+ +.||+++++..+.++. ++++ ++....+. .+.+|+...+.+|+..+++
T Consensus 713 ------~~al--------------eeGVe~~~~~~p~~I~-----~g~l---~v~~~~l~~~d~sGr~~~v~~Gee~~I~ 764 (1012)
T TIGR03315 713 ------EEAL--------------EDGVDFKELLSPESFE-----DGTL---TCEVMKLGEPDASGRRRPVGTGETVDLP 764 (1012)
T ss_pred ------HHHH--------------HcCCEEEeCCceEEEE-----CCeE---EEEEEEeecccCCCceeeecCCCeEEEE
Confidence 1111 4689999999998886 3433 23222222 2234555555567777999
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
||+||+|+|++|+. .+.+..|+.++++|++.+|+.. ++|+.|+|||+|||+.+|..++ .|+.+|+.+|.+|++.
T Consensus 765 aD~VIvAiG~~Pnt----~lle~~GL~ld~~G~I~VD~~~-~~Ts~pgVFAaGD~a~GP~tVv-~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 765 ADTVIAAVGEQVDT----DLLQKNGIPLDEYGWPVVNQAT-GETNITNVFVIGDANRGPATIV-EAIADGRKAANAILSR 838 (1012)
T ss_pred eCEEEEecCCcCCh----HHHHhcCcccCCCCCEEeCCCC-CccCCCCEEEEeCcCCCccHHH-HHHHHHHHHHHHHhcc
Confidence 99999999999976 3446678888889999999765 6799999999999998888877 7999999999999875
Q ss_pred Hh
Q 011535 415 LE 416 (483)
Q Consensus 415 l~ 416 (483)
..
T Consensus 839 ~~ 840 (1012)
T TIGR03315 839 EG 840 (1012)
T ss_pred cc
Confidence 43
No 18
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-36 Score=297.39 Aligned_cols=321 Identities=17% Similarity=0.202 Sum_probs=233.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCceecccCCCCCChHHHHHHHHHHHhcCC-eEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~-v~~~~~~~v 95 (483)
.+++|||||||++|+++|..|.++.++.+|++||+.++ ++-.+.|.++.+..+..++...+.++++..+ ++|+.+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 46899999999999999999999843699999999976 4566777787777788889899999998555 999999877
Q ss_pred ce-----EEEecc-eeeccCEEEEccCCCCCCCCCCCCCC-----CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEE
Q 011535 96 GS-----SVSLSE-LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVI 164 (483)
Q Consensus 96 ~~-----~~~~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvV 164 (483)
.. .+++++ ....||+||+|+|+ .+..+++||.. ++.+..+..+..++....+..+...+...-.+++|
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs-~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCC-cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 43 456666 34579999999999 57778999943 45555555555444321111111111012358999
Q ss_pred EcCCchHHHHHHHHhcCCccccccccchHHHHHHhc-CC---ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEG-SS---IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 165 IG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~-~~---~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|||++|+|+|.+|.. ..-+.++. .. --+|+++.+.+.+...|.
T Consensus 161 vGgG~TGVElAgeL~~------------~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~-------------------- 208 (405)
T COG1252 161 VGGGPTGVELAGELAE------------RLHRLLKKFRVDPSELRVILVEAGPRILPMFP-------------------- 208 (405)
T ss_pred ECCChhHHHHHHHHHH------------HHHHHhhhhcCCccccEEEEEccCchhccCCC--------------------
Confidence 9999999999999985 11112221 11 127889888887765444
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
+++.+...+.|. ++||++++++.++++. . + .|++.+
T Consensus 209 --------------~~l~~~a~~~L~-------------~~GV~v~l~~~Vt~v~--~--~----~v~~~~--------- 244 (405)
T COG1252 209 --------------PKLSKYAERALE-------------KLGVEVLLGTPVTEVT--P--D----GVTLKD--------- 244 (405)
T ss_pred --------------HHHHHHHHHHHH-------------HCCCEEEcCCceEEEC--C--C----cEEEcc---------
Confidence 222223333443 7899999999999997 2 2 233322
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-----
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT----- 394 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~----- 394 (483)
++. +|+||++|||+|.++++ +..+ .++..|..|++.|++++ +..++|+||++|||+..+.
T Consensus 245 -------g~~-~I~~~tvvWaaGv~a~~-----~~~~l~~~e~dr~Grl~V~~~L-~~~~~~~IFa~GD~A~~~~~~p~P 310 (405)
T COG1252 245 -------GEE-EIPADTVVWAAGVRASP-----LLKDLSGLETDRRGRLVVNPTL-QVPGHPDIFAAGDCAAVIDPRPVP 310 (405)
T ss_pred -------CCe-eEecCEEEEcCCCcCCh-----hhhhcChhhhccCCCEEeCCCc-ccCCCCCeEEEeccccCCCCCCCC
Confidence 222 79999999999999987 3344 46777889999999998 8899999999999996432
Q ss_pred chhHhhHHHHHHHHHHHHHHHhcCcCCCCCCCCCC
Q 011535 395 GIIATNLYCAEETVASISEDLEQGVLASSSGLPKP 429 (483)
Q Consensus 395 ~~~~~a~~~g~~~a~~I~~~l~~~~~~~~~~~~~~ 429 (483)
+....|++||..+|.||.+++.+.++.++.+...+
T Consensus 311 ~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~G 345 (405)
T COG1252 311 PTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDKG 345 (405)
T ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccceE
Confidence 33347999999999999999999988888655433
No 19
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=7.5e-35 Score=291.11 Aligned_cols=324 Identities=27% Similarity=0.376 Sum_probs=226.2
Q ss_pred hhhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcC
Q 011535 6 AWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE 85 (483)
Q Consensus 6 ~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~ 85 (483)
.|++. ...+...++|+|||+|++|+++|..|++.+ .+|++||+.+.++|++.++..+.....+.+.....++. ..
T Consensus 7 ~~~~~--~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~-~~ 81 (352)
T PRK12770 7 AFMCK--EKPPPTGKKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELE-EA 81 (352)
T ss_pred hhhcc--cCCCCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHH-hC
Confidence 35554 233456789999999999999999999998 99999999999999887765333323334444444444 44
Q ss_pred CeEEEeCeEEceE---------------EEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCC-CC
Q 011535 86 RCSFFGNVTLGSS---------------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP-DG 149 (483)
Q Consensus 86 ~v~~~~~~~v~~~---------------~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~-~~ 149 (483)
+++++.++.+... +..++....||+||||||+..++.+++||.+.++++++.++..++.... .+
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~ 161 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGY 161 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccc
Confidence 8999988766211 0111112369999999999546778899988888888765543332211 10
Q ss_pred CCC--CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHH
Q 011535 150 KNL--SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (483)
Q Consensus 150 ~~~--~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~ 227 (483)
... .++. .+++++|||+|++|+|+|..|.. .+.++|+++.|+.......+
T Consensus 162 ~~~~~~~~~-~g~~vvViG~G~~g~e~A~~l~~--------------------~g~~~Vtvi~~~~~~~~~~~------- 213 (352)
T PRK12770 162 LPWEKVPPV-EGKKVVVVGAGLTAVDAALEAVL--------------------LGAEKVYLAYRRTINEAPAG------- 213 (352)
T ss_pred ccccccccc-CCCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEeecchhhCCCC-------
Confidence 010 0112 47899999999999999998875 56667999998764221111
Q ss_pred hcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEE
Q 011535 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v 307 (483)
.+..+.|. +++|+++++..+.++. + ++++..+
T Consensus 214 -------------------------------~~~~~~l~-------------~~gi~i~~~~~v~~i~--~--~~~~~~v 245 (352)
T PRK12770 214 -------------------------------KYEIERLI-------------ARGVEFLELVTPVRII--G--EGRVEGV 245 (352)
T ss_pred -------------------------------HHHHHHHH-------------HcCCEEeeccCceeee--c--CCcEeEE
Confidence 01112232 6799999999999997 4 4667777
Q ss_pred EEeeeeeeCC-CCCceee-ccCCceEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCcee
Q 011535 308 HFEKTALKGG-GPGKQYA-VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLY 384 (483)
Q Consensus 308 ~~~~~~l~~~-~~g~~~~-~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vy 384 (483)
++....+... .+++... ..+++..+++||.||+++|++|++ .+... .|+..+++|++.+|++ ++|+.|+||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~----~l~~~~~g~~~~~~g~i~vd~~--~~t~~~~vy 319 (352)
T PRK12770 246 ELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP----PFAKECLGIELNRKGEIVVDEK--HMTSREGVF 319 (352)
T ss_pred EEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc----hhhhcccCceecCCCcEeeCCC--cccCCCCEE
Confidence 7765443221 1111111 113556689999999999999976 23333 6788888899999987 678999999
Q ss_pred eeccCCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 385 VCGWLKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 385 a~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
++|||+.++..+. .|+.+|+.+|.+|.++|..
T Consensus 320 aiGD~~~~~~~~~-~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 320 AAGDVVTGPSKIG-KAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred EEcccccCcchHH-HHHHHHHHHHHHHHHHHhc
Confidence 9999988776555 8999999999999999864
No 20
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-34 Score=306.71 Aligned_cols=320 Identities=24% Similarity=0.281 Sum_probs=231.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..+.++|+|||+||||+++|..|.+.+ ++|+|||+.+.++|.+.+++ |.+...+++.....+.++..|++++.++.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 346789999999999999999999999 99999999999999999987 776666666666666778889999999988
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+.+++.+.....||+||+|||+..++++++||.+..+++++.++...++...... ......+++|+|||||++|+|+|
T Consensus 357 ~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~--~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 357 GKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGE--GPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred CCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccC--CCcCCCCCcEEEECCchHHHHHH
Confidence 7665555555579999999999767889999999889998877654333211100 00011468999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeec-CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR-GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~-~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (483)
..|.+... ...+..+|+++..+ .... ++....+.
T Consensus 435 ~~l~r~~~---------------~~~g~~~V~v~~~~r~~~~----------------------------~~~~~~e~-- 469 (604)
T PRK13984 435 RSMARLQK---------------MEYGEVNVKVTSLERTFEE----------------------------MPADMEEI-- 469 (604)
T ss_pred HHHHhccc---------------cccCceEEEEeccccCccc----------------------------CCCCHHHH--
Confidence 99975100 01134578876432 1111 12111110
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeec-cCCceEEE
Q 011535 255 SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV-GTGEFEDL 333 (483)
Q Consensus 255 ~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~-~~g~~~~i 333 (483)
.+.+ +.||+++++..+.++. . +++++.++++.......+.+|+.... .+++..++
T Consensus 470 -------~~~~--------------~~GV~i~~~~~~~~i~--~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i 525 (604)
T PRK13984 470 -------EEGL--------------EEGVVIYPGWGPMEVV--I-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIV 525 (604)
T ss_pred -------HHHH--------------HcCCEEEeCCCCEEEE--c-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEE
Confidence 0111 5699999999999987 4 47888888876543222334442222 24556789
Q ss_pred ecCeEEEeeecCCCCCCCCCccCC--CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 334 DCGMVLKSIGYKSVPVNGLPFDNH--KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 334 ~~D~vi~a~G~~~~~~~~l~~~~~--~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
++|+||+|+|++|+.- . +... .++.. ++|++.+|++ ++|++|+|||+||++.++. ++ .|+.+|+.+|.+|
T Consensus 526 ~aD~Vi~aiG~~p~~~-~--l~~~~~~~l~~-~~G~i~vd~~--~~Ts~~gVfAaGD~~~~~~-~v-~Ai~~G~~AA~~I 597 (604)
T PRK13984 526 EADMVVEAIGQAPDYS-Y--LPEELKSKLEF-VRGRILTNEY--GQTSIPWLFAGGDIVHGPD-II-HGVADGYWAAEGI 597 (604)
T ss_pred ECCEEEEeeCCCCChh-h--hhhhhccCccc-cCCeEEeCCC--CccCCCCEEEecCcCCchH-HH-HHHHHHHHHHHHH
Confidence 9999999999999751 1 1111 23444 4688999987 7899999999999998774 45 7999999999999
Q ss_pred HHHHhc
Q 011535 412 SEDLEQ 417 (483)
Q Consensus 412 ~~~l~~ 417 (483)
.++|.+
T Consensus 598 ~~~L~~ 603 (604)
T PRK13984 598 DMYLRK 603 (604)
T ss_pred HHHhcc
Confidence 999865
No 21
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=299.05 Aligned_cols=314 Identities=24% Similarity=0.317 Sum_probs=237.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
....++|+|||+||+||++|..|++.| ++|++||+.+.+||++++++ |.+..++++.....+.+...|++++.++.+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 346789999999999999999999999 99999999999999999998 777777777666666677789999999877
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+.++........||+|++|||+.....+.++|.+..+++.+..+........ .. ..+++|+|||+|++|+|++
T Consensus 211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~------~~-~~gk~v~ViGgg~~a~d~a 283 (564)
T PRK12771 211 GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE------PP-FLGKRVVVIGGGNTAMDAA 283 (564)
T ss_pred CCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC------Cc-CCCCCEEEECChHHHHHHH
Confidence 5554443333469999999999766777899988888887766543221111 11 2578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
..+.+ .+.++|++++|++.... +....
T Consensus 284 ~~a~~--------------------lga~~v~ii~r~~~~~~----------------------------~~~~~----- 310 (564)
T PRK12771 284 RTARR--------------------LGAEEVTIVYRRTREDM----------------------------PAHDE----- 310 (564)
T ss_pred HHHHH--------------------cCCCEEEEEEecCcccC----------------------------CCCHH-----
Confidence 87775 56678999999864321 11111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+.. +.||+++++..+.++. . +++.+.++++....+. .+.+|+..++ +++..+++
T Consensus 311 --------~~~~a~----------~~GVki~~~~~~~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~-~g~~~~i~ 368 (564)
T PRK12771 311 --------EIEEAL----------REGVEINWLRTPVEIE--G-DENGATGLRVITVEKMELDEDGRPSPV-TGEEETLE 368 (564)
T ss_pred --------HHHHHH----------HcCCEEEecCCcEEEE--c-CCCCEEEEEEEEEEecccCCCCCeeec-CCceEEEE
Confidence 111111 5689999999999997 4 2333337766554432 2334554443 56667999
Q ss_pred cCeEEEeeecCCCCCCCCCccC-CCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDN-HKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~-~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|+||+|+|++|++ .+.+ ..++. +++|++.+|+.. ++|+.|+|||+||+..++..++ .|+.+|+.+|.+|.+
T Consensus 369 ~D~Vi~A~G~~p~~----~~~~~~~gl~-~~~G~i~vd~~~-~~ts~~~Vfa~GD~~~g~~~v~-~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 369 ADLVVLAIGQDIDS----AGLESVPGVE-VGRGVVQVDPNF-MMTGRPGVFAGGDMVPGPRTVT-TAIGHGKKAARNIDA 441 (564)
T ss_pred CCEEEECcCCCCch----hhhhhccCcc-cCCCCEEeCCCC-ccCCCCCEEeccCcCCCchHHH-HHHHHHHHHHHHHHH
Confidence 99999999999965 2333 35666 778999999855 8899999999999998888777 799999999999999
Q ss_pred HHhcCcCC
Q 011535 414 DLEQGVLA 421 (483)
Q Consensus 414 ~l~~~~~~ 421 (483)
+|.+....
T Consensus 442 ~L~g~~~~ 449 (564)
T PRK12771 442 FLGGEPYE 449 (564)
T ss_pred HHcCCCCC
Confidence 99876543
No 22
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=4.1e-34 Score=288.76 Aligned_cols=326 Identities=26% Similarity=0.381 Sum_probs=255.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+.++|+|||||||||++|..|.+.+ +.|+++|+.+.+||+++||+ |.+...+++.....+.++..|++|+.++.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 456699999999999999999999999 99999999999999999998 999999999999999999999999999999
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCC--CCCCCCCCCeEEEEcCCchHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN--LSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+++++++++...||+|++|||+..++.+++||.++++|+.|.+|+...+..-.... .......+++|+|||+|++++|
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D 276 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMD 276 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHH
Confidence 99999999988899999999998899999999999999999999877664322110 1112225699999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+++...+ .|+++|+.++|...... ++..+.
T Consensus 277 ~~~t~~r--------------------~Ga~~v~~~~~~~~~~~---------------------------~~~~~~--- 306 (457)
T COG0493 277 CAGTALR--------------------LGAKSVTCFYREDRDDE---------------------------TNEWPT--- 306 (457)
T ss_pred HHHHHhh--------------------cCCeEEEEecccccccc---------------------------CCcccc---
Confidence 9988776 79999999875432200 000000
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC--CCCceeecc-CCce
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG--GPGKQYAVG-TGEF 330 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~--~~g~~~~~~-~g~~ 330 (483)
+.. +...+ ...++|+.+.+...+.++. .+++|+|..+++..+..... +.++...++ .|+.
T Consensus 307 --~~~----~~~~~---------~a~eeg~~~~~~~~~~~~~--~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~ 369 (457)
T COG0493 307 --WAA----QLEVR---------SAGEEGVERLPFVQPKAFI--GNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTE 369 (457)
T ss_pred --cch----hhhhh---------hhhhcCCcccccCCceeEe--ecCCCcEeeeecccccccCcccccccccCccccCce
Confidence 000 01111 1126789999999999998 54689999998877655422 122322332 4677
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVAS 410 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~ 410 (483)
.++++|+|+.++|+.++..... + ...++..+..|++.++... .+|+.|++||.||+.+|..-++ .|+.+|+.+|+.
T Consensus 370 ~~~~aD~v~~aig~~~~~~~~~-~-~~~~~~~~~~g~i~~~~~~-~~ts~~~vfa~gD~~~g~~~vv-~ai~eGr~aak~ 445 (457)
T COG0493 370 KTDAADTVILAIGFEGDATDGL-L-LEFGLKLDKRGRIKVDENL-QQTSIPGVFAGGDAVRGAALVV-WAIAEGREAAKA 445 (457)
T ss_pred EEehHHHHHHHhccCCCccccc-c-cccccccCCCCceeccccc-ccccCCCeeeCceeccchhhhh-hHHhhchHHHHh
Confidence 7999999999999998753211 1 1226778889999999874 3899999999999999877777 899999999999
Q ss_pred HHHHH
Q 011535 411 ISEDL 415 (483)
Q Consensus 411 I~~~l 415 (483)
|..++
T Consensus 446 i~~~~ 450 (457)
T COG0493 446 IDKEL 450 (457)
T ss_pred hhHHH
Confidence 99443
No 23
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.4e-32 Score=281.01 Aligned_cols=288 Identities=17% Similarity=0.201 Sum_probs=203.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC---------------------------CC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH---------------------------PE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~---------------------------~~ 70 (483)
..++|+||||||||++||..|++.| .+|+|||+.+..|+++..|+.|.. ..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLG--MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 3589999999999999999999999 999999998655656666665531 11
Q ss_pred hHHHH-----------HHHHHHHhcC-CeEEEeCeEE---ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 011535 71 TKIVI-----------NQFSRVVQHE-RCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (483)
Q Consensus 71 ~~~~~-----------~~~~~~~~~~-~v~~~~~~~v---~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~ 135 (483)
...+. ..+...++.. +++++.++.+ .+.+.+......||+||||||+ .|+.+++||.+..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs-~p~~p~i~G~~~~~~~~ 160 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGA-RAAIPPIPGLDEVGYLT 160 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCC-CCCCCCCCCCCcCceEc
Confidence 11111 1233445555 8998888754 2234444334579999999999 67888999987666666
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.++... + ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.+.+.+
T Consensus 161 ~~~~~~~------------~-~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~~ 206 (463)
T PRK06370 161 NETIFSL------------D-ELPEHLVIIGGGYIGLEFAQMFRR--------------------FG-SEVTVIERGPRL 206 (463)
T ss_pred chHhhCc------------c-ccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCCC
Confidence 5443211 0 146899999999999999999985 34 479999998754
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...+. +.....+.+.|. +.||++++++.+.++.
T Consensus 207 l~~~~----------------------------------~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~ 239 (463)
T PRK06370 207 LPRED----------------------------------EDVAAAVREILE-------------REGIDVRLNAECIRVE 239 (463)
T ss_pred CcccC----------------------------------HHHHHHHHHHHH-------------hCCCEEEeCCEEEEEE
Confidence 32211 111112222332 6799999999999997
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. +++.+ .+.+.. ++...++++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 240 --~-~~~~~-~v~~~~---------------~~~~~~i~~D~Vi~A~G~~pn~~-~l~-l~~~g~~~~~~G~i~vd~~-- 296 (463)
T PRK06370 240 --R-DGDGI-AVGLDC---------------NGGAPEITGSHILVAVGRVPNTD-DLG-LEAAGVETDARGYIKVDDQ-- 296 (463)
T ss_pred --E-cCCEE-EEEEEe---------------CCCceEEEeCEEEECcCCCcCCC-CcC-chhhCceECCCCcEeECcC--
Confidence 3 22221 222211 12235799999999999999862 121 3556888888999999988
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.... .|..||+.+|+||+.
T Consensus 297 l~t~~~~IyAiGD~~~~~~~~~-~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGRGAFTH-TAYNDARIVAANLLD 333 (463)
T ss_pred CcCCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHhC
Confidence 7799999999999987666555 799999999999974
No 24
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-34 Score=294.20 Aligned_cols=337 Identities=21% Similarity=0.298 Sum_probs=247.8
Q ss_pred ccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 13 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.+..++.++|+|||+|||||+||-.|-+.| +.|+++||.+.+||++.||+ |.....+.++..-.+++...|++|+.|
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~tn 1855 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVTN 1855 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEee
Confidence 445678899999999999999999999999 99999999999999999999 888777778887788888899999999
Q ss_pred eEEceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC--CCCCCCCCCCeEEEEcCCch
Q 011535 93 VTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK--NLSPDLKSTDTAVILGQGNV 170 (483)
Q Consensus 93 ~~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~vvVIG~G~~ 170 (483)
+++++++.++.+...+|++|+|+|++.|+.+++||-+++||.-+.+|.+.-....--. +....-.++|+|+|||||.+
T Consensus 1856 ~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1856 TEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred ccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCc
Confidence 9999999999999999999999999999999999999999998888775321110000 11111137899999999999
Q ss_pred HHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHH
Q 011535 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (483)
Q Consensus 171 g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (483)
|-||...-.+ .|++.|.-+.-= +.|....
T Consensus 1936 g~dcigtsvr--------------------hg~~sv~n~ell-------------------------------p~pp~~r 1964 (2142)
T KOG0399|consen 1936 GTDCIGTSVR--------------------HGCKSVGNFELL-------------------------------PQPPPER 1964 (2142)
T ss_pred cccccccchh--------------------hccceecceeec-------------------------------CCCCccc
Confidence 9999987665 566655322110 1111111
Q ss_pred HhhccHHHH-HHHHHH--HHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeecc-
Q 011535 251 EMKNSRIQR-RVYELL--SKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG- 326 (483)
Q Consensus 251 ~~~~~~~~~-r~~~~l--~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~- 326 (483)
....+|+.. |+.+.- ...+.. .-....+-..+ ..++++ ++++|.|++++..+++.+.+..|+++...
T Consensus 1965 a~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~v----ltk~f~--~~~~g~v~gl~~vrvew~k~~~g~w~~~ei 2035 (2142)
T KOG0399|consen 1965 APDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSV----LTKRFI--GDDNGNVTGLETVRVEWEKDDKGRWQMKEI 2035 (2142)
T ss_pred CCCCCCccCceEEEeecchHHHHH---HhCCCcceeee----eeeeee--ccCCCceeeEEEEEEEEEecCCCceEEEEc
Confidence 111111111 000000 000000 00011122222 235677 55799999999999999888888876554
Q ss_pred CCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHH
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEE 406 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~ 406 (483)
.++.+.|+||+||+|.||-.+... ..++.++..+.++.+.+.... .++++++|||+|||.+|.+-++ .|+++|++
T Consensus 2036 ~~see~~eadlv~lamgf~gpe~~---~~~~~~~~~d~rsni~t~~~~-y~t~v~~vfaagdcrrgqslvv-wai~egrq 2110 (2142)
T KOG0399|consen 2036 NNSEEIIEADLVILAMGFVGPEKS---VIEQLNLKTDPRSNILTPKDS-YSTDVAKVFAAGDCRRGQSLVV-WAIQEGRQ 2110 (2142)
T ss_pred CCcceeeecceeeeeccccCcchh---hhhhcCcccCccccccCCCcc-ccccccceeecccccCCceEEE-EEehhhhH
Confidence 556678999999999999875422 346677888888888765554 7799999999999999988888 89999999
Q ss_pred HHHHHHHHHhc
Q 011535 407 TVASISEDLEQ 417 (483)
Q Consensus 407 ~a~~I~~~l~~ 417 (483)
+|..+-..+.+
T Consensus 2111 ~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2111 AARQVDELMGG 2121 (2142)
T ss_pred HHHHHHHHhCC
Confidence 99999885444
No 25
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.8e-31 Score=274.66 Aligned_cols=283 Identities=18% Similarity=0.210 Sum_probs=195.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC---------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP---------------------------E 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~---------------------------~ 70 (483)
.++|+||||||||++||..|++.| .+|+|||+.. +|| ++..|+.|... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 479999999999999999999999 9999999964 555 45566655420 1
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCC-CCCCCCCCCeee
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDLIGVHS 135 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~-~ipg~~~~~v~~ 135 (483)
... +...+...++..+++++.++..- ..+.+......||+||||||+ .|+.| ++||.+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs-~p~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGG-KPSFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCCCce--eEc
Confidence 111 11224445566789988876641 223333334579999999999 46666 7887642 122
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.++.. +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+
T Consensus 156 ~~~~~~----------~~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~~i 201 (450)
T TIGR01421 156 SDGFFA----------LE---ELPKRVVIVGAGYIAVELAGVLHG--------------------LG-SETHLVIRHERV 201 (450)
T ss_pred HHHhhC----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCCC
Confidence 222211 00 135799999999999999999985 33 579999998765
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...|.. .....+.+.|. ++||+++++..+.++.
T Consensus 202 l~~~d~----------------------------------~~~~~~~~~l~-------------~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 202 LRSFDS----------------------------------MISETITEEYE-------------KEGINVHKLSKPVKVE 234 (450)
T ss_pred CcccCH----------------------------------HHHHHHHHHHH-------------HcCCEEEcCCEEEEEE
Confidence 433321 11222223333 6799999999999987
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. +++....+.+. .+ .++++||.||+|+|++|++. .+ ..+..++.++++|++.+|++
T Consensus 235 --~-~~~~~~~v~~~----------------~g-~~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~G~i~vd~~-- 290 (450)
T TIGR01421 235 --K-TVEGKLVIHFE----------------DG-KSIDDVDELIWAIGRKPNTK-GL-GLENVGIKLNEKGQIIVDEY-- 290 (450)
T ss_pred --E-eCCceEEEEEC----------------CC-cEEEEcCEEEEeeCCCcCcc-cC-CccccCcEECCCCcEEeCCC--
Confidence 3 12211122221 12 14799999999999999872 11 24667888999999999998
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|++|+|||+|||+..+.... .|.++|+.+|++|..
T Consensus 291 ~~T~~p~IyAiGD~~~~~~~~~-~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKVELTP-VAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCCcccHH-HHHHHHHHHHHHHhc
Confidence 7899999999999987665554 799999999999863
No 26
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-31 Score=257.13 Aligned_cols=284 Identities=22% Similarity=0.251 Sum_probs=208.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCeEEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v~~~ 90 (483)
..++|+|||||||||+||.++.+.+ .+++||+....+||.+... -.|+++ ...++...+.+++...++++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 3579999999999999999999999 9955555555566543211 113333 345778888888888898887
Q ss_pred eCeEEc----e---EEEecceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCC
Q 011535 91 GNVTLG----S---SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (483)
Q Consensus 91 ~~~~v~----~---~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (483)
...+.. . .+.+.+....+++||||||+ .++.+++||+. .++|..+.... . +..++
T Consensus 80 ~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~-~~~~~~~~~e~e~~g~gv~yc~~cd-------------g-~~~~k 144 (305)
T COG0492 80 EDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYCATCD-------------G-FFKGK 144 (305)
T ss_pred EEEEEEEeecCceEEEEECCCeEEEeEEEECcCC-cccCCCCCcchhhcCCceEEeeecC-------------c-cccCC
Confidence 743321 1 23444445568999999999 68888888654 23444333211 1 22678
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||||++|+|-|..|.+ -+++||+++|++.+..
T Consensus 145 ~v~ViGgG~sAve~Al~L~~---------------------~a~~Vtlv~r~~~~ra----------------------- 180 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSK---------------------IAKKVTLVHRRDEFRA----------------------- 180 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHH---------------------hcCeEEEEecCcccCc-----------------------
Confidence 99999999999999999985 5578999999986421
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+.+.+.+.+ ..+|.+++++.+.++. + ++ +.++++.+++
T Consensus 181 -----------------~~~~~~~l~~------------~~~i~~~~~~~i~ei~--G--~~-v~~v~l~~~~------- 219 (305)
T COG0492 181 -----------------EEILVERLKK------------NVKIEVLTNTVVKEIL--G--DD-VEGVVLKNVK------- 219 (305)
T ss_pred -----------------CHHHHHHHHh------------cCCeEEEeCCceeEEe--c--Cc-cceEEEEecC-------
Confidence 0011122221 2389999999999998 6 44 7788887631
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-chhHh
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT-GIIAT 399 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~-~~~~~ 399 (483)
++..++++|-++.++|+.|+. .|....++ ++++|++.+++. ++|++|||||+||++..+. .++ +
T Consensus 220 -------~~~~~~~~~gvf~~iG~~p~~----~~~~~~~~-~~~~g~I~v~~~--~~TsvpGifAaGDv~~~~~rqi~-t 284 (305)
T COG0492 220 -------GEEKELPVDGVFIAIGHLPNT----ELLKGLGV-LDENGYIVVDEE--METSVPGIFAAGDVADKNGRQIA-T 284 (305)
T ss_pred -------CceEEEEeceEEEecCCCCch----HHHhhccc-cCCCCcEEcCCC--cccCCCCEEEeEeeccCcccEEe-e
Confidence 455689999999999999986 24455555 788999999987 8999999999999987665 455 8
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 011535 400 NLYCAEETVASISEDLEQG 418 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l~~~ 418 (483)
|..+|..+|.++.++|...
T Consensus 285 a~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 285 AAGDGAIAALSAERYLESL 303 (305)
T ss_pred hhhhHHHHHHHHHHHhhhc
Confidence 9999999999999998753
No 27
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=2.3e-31 Score=260.37 Aligned_cols=280 Identities=23% Similarity=0.315 Sum_probs=197.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-c---cCCCCC---ChHHHHHHHHHHHhcCCeEEEeC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---VAPDHP---ETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g---~~p~~~---~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
++|+||||||||+++|..|++.+ .+|+|||+.+ +||.+.. . -.|+++ ...++..++.+.++..+++++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 48999999999999999999998 9999999887 5554321 1 114432 33577888888888889998874
Q ss_pred eEEce-------EEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 93 VTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 93 ~~v~~-------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.++.. .+.+.++ ...||+||+|||+ .++.+++||.+. .+++... .+. .....+++
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~i~g~~~~~~~~~~~~~----~~~---------~~~~~~~~ 143 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA-SARKLGIPGEDEFLGRGVSYCA----TCD---------GPFFKNKE 143 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC-CcccCCCCChhhcCCccEEEee----ecC---------hhhcCCCE
Confidence 33321 1223332 3469999999999 577778888541 1222111 110 01125789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ ..++|+++.|++.+..
T Consensus 144 v~ViG~G~~~~e~a~~l~~---------------------~~~~V~~v~~~~~~~~------------------------ 178 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTR---------------------IAKKVTLVHRRDKFRA------------------------ 178 (300)
T ss_pred EEEECCChHHHHHHHHHHh---------------------hcCEEEEEEeCcccCc------------------------
Confidence 9999999999999999875 3468999998764210
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc-eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR-ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+.+.+.+. ++ +|++++++.+.++. . ++++..+++...
T Consensus 179 ----------------~~~~~~~l~-------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~-------- 217 (300)
T TIGR01292 179 ----------------EKILLDRLR-------------KNPNIEFLWNSTVKEIV--G--DNKVEGVKIKNT-------- 217 (300)
T ss_pred ----------------CHHHHHHHH-------------hCCCeEEEeccEEEEEE--c--cCcEEEEEEEec--------
Confidence 001112222 44 99999999999997 4 445555655431
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcchhHh
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTGIIAT 399 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~~~~~ 399 (483)
.+++..++++|+||||+|++|+. .+.+.. +..+++|++.++++ +++++|+||++|||+. .+.... .
T Consensus 218 -----~~g~~~~i~~D~vi~a~G~~~~~----~~l~~~-~~~~~~g~i~v~~~--~~t~~~~vya~GD~~~~~~~~~~-~ 284 (300)
T TIGR01292 218 -----VTGEEEELKVDGVFIAIGHEPNT----ELLKGL-LELDEGGYIVTDEG--MRTSVPGVFAAGDVRDKGYRQAV-T 284 (300)
T ss_pred -----CCCceEEEEccEEEEeeCCCCCh----HHHHHh-heecCCCcEEECCC--CccCCCCEEEeecccCcchhhhh-h
Confidence 13555689999999999999976 233433 55677899999988 7799999999999987 455454 7
Q ss_pred hHHHHHHHHHHHHHHH
Q 011535 400 NLYCAEETVASISEDL 415 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l 415 (483)
|+.+|+.+|.+|.++|
T Consensus 285 A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 285 AAGDGCIAALSAERYL 300 (300)
T ss_pred hhhhHHHHHHHHHhhC
Confidence 9999999999998764
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.8e-31 Score=275.20 Aligned_cols=286 Identities=19% Similarity=0.240 Sum_probs=200.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC-------------------------Ch---
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-------------------------ET--- 71 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~-------------------------~~--- 71 (483)
++|+||||||||++||..+++.+ .+|+|||+.+..|.++.+|+.|... ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 48999999999999999999999 9999999987555556666666311 01
Q ss_pred ----HHHHHH-----HHHHHhcCCeEEEeCeEE---ceEEEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCeeecc
Q 011535 72 ----KIVINQ-----FSRVVQHERCSFFGNVTL---GSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (483)
Q Consensus 72 ----~~~~~~-----~~~~~~~~~v~~~~~~~v---~~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~ 137 (483)
+++... +..+++..+++++.+... ...+.+.++ ...||+||||||+ .|..+++||.+..++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs-~p~~p~i~G~~~~~~~~~~ 157 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGA-RPAIPPIPGLKEAGYLTSE 157 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCC-CCCCCCCCCcccCceECch
Confidence 112111 334566678998877654 223444442 3469999999999 5787889997755555544
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++... . ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+..
T Consensus 158 ~~~~~------------~-~~~~~vvIIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 158 EALAL------------D-RIPESLAVIGGGAIGVELAQAFAR--------------------LG-SEVTILQRSDRLLP 203 (463)
T ss_pred hhhCc------------c-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCCcCCC
Confidence 33210 0 135799999999999999999885 34 47999999865432
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +.....+.+.+. +.||+++++..+.++.
T Consensus 204 ~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~V~~i~-- 234 (463)
T TIGR02053 204 REE----------------------------------PEISAAVEEALA-------------EEGIEVVTSAQVKAVS-- 234 (463)
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------HcCCEEEcCcEEEEEE--
Confidence 211 111112222332 6789999999999987
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. ++....+.+.. .+..+++++|.||+|+|++|+.. .+ ..+..++..+++|++.+|++ ++
T Consensus 235 ~--~~~~~~v~~~~---------------~~~~~~i~~D~ViiA~G~~p~~~-~l-~l~~~g~~~~~~G~i~vd~~--~~ 293 (463)
T TIGR02053 235 V--RGGGKIITVEK---------------PGGQGEVEADELLVATGRRPNTD-GL-GLEKAGVKLDERGGILVDET--LR 293 (463)
T ss_pred E--cCCEEEEEEEe---------------CCCceEEEeCEEEEeECCCcCCC-CC-CccccCCEECCCCcEeECCC--cc
Confidence 3 22222233221 12335899999999999999862 12 13566788888999999987 78
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+.++.... .|+.||+.+|.||+.
T Consensus 294 Ts~~~VyAiGD~~~~~~~~~-~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 294 TSNPGIYAAGDVTGGLQLEY-VAAKEGVVAAENALG 328 (463)
T ss_pred CCCCCEEEeeecCCCcccHh-HHHHHHHHHHHHhcC
Confidence 99999999999988766555 799999999999974
No 29
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=8.5e-31 Score=264.53 Aligned_cols=287 Identities=18% Similarity=0.286 Sum_probs=207.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC---------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~--------------------------- 69 (483)
..++++|||+||||..+|.++++.+ .+|.++|+.+..|| ++++||.|...
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 4689999999999999999999999 77999999965554 56777766421
Q ss_pred ChHHHH-----------HHHHHHHhcCCeEEEeCeEE---ceEEEecc---eeeccCEEEEccCCCCCCCCCCCCCCCCC
Q 011535 70 ETKIVI-----------NQFSRVVQHERCSFFGNVTL---GSSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (483)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~v---~~~~~~~~---~~~~yd~vvlAtG~~~~~~~~ipg~~~~~ 132 (483)
..+++. ..+..+++..+++++.+... ...+.+.. ....++++|||||+ .|..|+++|.+...
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS-~p~~~~~~~~~~~~ 159 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS-RPRIPPGPGIDGAR 159 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC-CCcCCCCCCCCCCe
Confidence 111111 12334455567877766543 12344443 34579999999999 68888888887666
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
++++.+..... ..+++++|||||.+|+|+|..+.+ .|. +|||+.|.
T Consensus 160 ~~~s~~~l~~~-------------~lP~~lvIiGgG~IGlE~a~~~~~--------------------LG~-~VTiie~~ 205 (454)
T COG1249 160 ILDSSDALFLL-------------ELPKSLVIVGGGYIGLEFASVFAA--------------------LGS-KVTVVERG 205 (454)
T ss_pred EEechhhcccc-------------cCCCEEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecC
Confidence 76665533211 146899999999999999999986 564 79999999
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+.. +. .+.+.+.|. +.++.++++..+.
T Consensus 206 ~~iLp~~D~-----------------------------ei-----~~~~~~~l~-------------~~gv~i~~~~~v~ 238 (454)
T COG1249 206 DRILPGEDP-----------------------------EI-----SKELTKQLE-------------KGGVKILLNTKVT 238 (454)
T ss_pred CCCCCcCCH-----------------------------HH-----HHHHHHHHH-------------hCCeEEEccceEE
Confidence 876543331 11 111223332 5689999999998
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . .++. ..+.+++ ++..++++|.|++|+|.+||. +++.+ ++.|+.++++|+|.||.
T Consensus 239 ~~~--~-~~~~-v~v~~~~----------------g~~~~~~ad~vLvAiGR~Pn~-~~LgL-e~~Gv~~~~rg~I~VD~ 296 (454)
T COG1249 239 AVE--K-KDDG-VLVTLED----------------GEGGTIEADAVLVAIGRKPNT-DGLGL-ENAGVELDDRGFIKVDD 296 (454)
T ss_pred EEE--e-cCCe-EEEEEec----------------CCCCEEEeeEEEEccCCccCC-CCCCh-hhcCceECCCCCEEeCC
Confidence 887 3 2222 2344332 222279999999999999986 44433 67899999999999994
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
. ++|++|+|||+|||..++. ....|..+|+.+|++|+.
T Consensus 297 -~-~~Tnvp~IyA~GDV~~~~~-Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 297 -Q-MTTNVPGIYAIGDVIGGPM-LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred -c-cccCCCCEEEeeccCCCcc-cHhHHHHHHHHHHHHHhC
Confidence 4 7888999999999988888 445899999999999997
No 30
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=274.15 Aligned_cols=311 Identities=15% Similarity=0.126 Sum_probs=205.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
.++++|||||||+||+.+|..|.+.. ++|+|||+++++ +..+.+.++.+.....++...+.+.+...+++|+.+.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~--~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK--YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC--CeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 45689999999999999999997655 999999998864 223333344444456677777888787778888887665
Q ss_pred ce-----EEEe----------cce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeeccee------eeeecCCCCCCC--
Q 011535 96 GS-----SVSL----------SEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF------VWWYNGHPDGKN-- 151 (483)
Q Consensus 96 ~~-----~~~~----------~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~------~~~~~~~~~~~~-- 151 (483)
.. .+.+ .++ ...||+||||||+ .+..+++||.+. .++....+ ...+....+...
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs-~~~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 163 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA-RPNTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASLP 163 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCc-ccCCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 32 2333 222 3579999999999 567778888642 22222211 111110000000
Q ss_pred -CCC-CCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc-----CCccEEEEEeecCcccccCCHHHH
Q 011535 152 -LSP-DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG-----SSIRKVYLVGRRGPVQAACTAKEL 224 (483)
Q Consensus 152 -~~~-~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~-----~~~~~V~li~r~~~~~~~f~~~el 224 (483)
.+. .....++++|||+|++|+|+|.+|... .-+..++ ....+|+++.+.+.+...+.
T Consensus 164 ~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~------------~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~---- 227 (424)
T PTZ00318 164 TTSVEERKRLLHFVVVGGGPTGVEFAAELADF------------FRDDVRNLNPELVEECKVTVLEAGSEVLGSFD---- 227 (424)
T ss_pred CCChHHHhccCEEEEECCCHHHHHHHHHHHHH------------HHHHHHhhhhcccccCEEEEEcCCCcccccCC----
Confidence 000 011235899999999999999998740 0000000 02357999998865432222
Q ss_pred HHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCce
Q 011535 225 REILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304 (483)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v 304 (483)
+...+.+.+.|. ++||+++++..+.++. . +
T Consensus 228 ------------------------------~~~~~~~~~~L~-------------~~gV~v~~~~~v~~v~--~--~--- 257 (424)
T PTZ00318 228 ------------------------------QALRKYGQRRLR-------------RLGVDIRTKTAVKEVL--D--K--- 257 (424)
T ss_pred ------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCeEEEEe--C--C---
Confidence 112222334443 7799999999998886 2 2
Q ss_pred EEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCcee
Q 011535 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLY 384 (483)
Q Consensus 305 ~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vy 384 (483)
.+.+. +| +++++|++||++|.+|++ +....++..+++|+|.+|+++ +.+++|+||
T Consensus 258 -~v~~~----------------~g--~~i~~d~vi~~~G~~~~~-----~~~~~~l~~~~~G~I~Vd~~l-~~~~~~~If 312 (424)
T PTZ00318 258 -EVVLK----------------DG--EVIPTGLVVWSTGVGPGP-----LTKQLKVDKTSRGRISVDDHL-RVKPIPNVF 312 (424)
T ss_pred -EEEEC----------------CC--CEEEccEEEEccCCCCcc-----hhhhcCCcccCCCcEEeCCCc-ccCCCCCEE
Confidence 23322 22 389999999999999976 445567777888999999985 557999999
Q ss_pred eeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhcCc-CCCC
Q 011535 385 VCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQGV-LASS 423 (483)
Q Consensus 385 a~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~~~-~~~~ 423 (483)
|+|||+.. |.... .|++||..+|.||.+.+.+.+ +.++
T Consensus 313 AiGD~a~~~~~~~~~~~~-~A~~qg~~~A~ni~~~l~g~~~~~~~ 356 (424)
T PTZ00318 313 ALGDCAANEERPLPTLAQ-VASQQGVYLAKEFNNELKGKPMSKPF 356 (424)
T ss_pred EEeccccCCCCCCCCchH-HHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999863 22333 699999999999999998875 4544
No 31
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=8.5e-31 Score=258.89 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=197.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc----CCCC---CChHHHHHHHHHHHhcCCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDH---PETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~----~p~~---~~~~~~~~~~~~~~~~~~v~~ 89 (483)
...++|+|||||||||+||..|++++ +++++||.. .+||.+.... .|.. .....+..++.+.....+.++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 45689999999999999999999999 899999954 4565532210 1321 233455667777777666666
Q ss_pred EeCeEEce-----E--EEecceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCC
Q 011535 90 FGNVTLGS-----S--VSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (483)
Q Consensus 90 ~~~~~v~~-----~--~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (483)
..+..... . ++.+.....||+||||||+ .++.+++||.+ ..+++.+. +... ....+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~-~~~~~~i~g~~~~~~~~v~~~~----~~~~---------~~~~g 146 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACA----TCDG---------FFYRN 146 (321)
T ss_pred EeeEEEEEEecCCeEEEEecCCEEEECEEEECCCC-CCCCCCCCCHHHcCCCcEEEee----cCCH---------HHcCC
Confidence 55433211 1 2222233569999999999 57778888854 22332211 1111 11257
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~ 239 (483)
++|+|||+|++|+|+|..|.+ ..++|+++.|++.+. +.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~---------------------~~~~Vtlv~~~~~~~--~~------------------- 184 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN---------------------IASEVHLIHRRDGFR--AE------------------- 184 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEECCccC--CC-------------------
Confidence 899999999999999999985 346899999986431 00
Q ss_pred ccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCC
Q 011535 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (483)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~ 319 (483)
+...+++.+.| .+.+|+++++..+.++. + +++.+..+++....
T Consensus 185 ---------------~~~~~~~~~~l-------------~~~gV~i~~~~~v~~v~--~-~~~~~~~v~~~~~~------ 227 (321)
T PRK10262 185 ---------------KILIKRLMDKV-------------ENGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ------ 227 (321)
T ss_pred ---------------HHHHHHHHhhc-------------cCCCeEEEeCCEEEEEE--c-CCccEEEEEEEEcC------
Confidence 01111122222 27789999999999997 4 34456666665411
Q ss_pred CceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC---CCCcccCceeeeccCCCCC-cc
Q 011535 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGP-TG 395 (483)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~---~~~t~~p~vya~Gd~~~g~-~~ 395 (483)
..++.+++++|.|||++|++|+.. +... ++.. ++|++.++++. .++|++|+|||+|||++.+ ..
T Consensus 228 ------~~~~~~~i~~D~vv~a~G~~p~~~----l~~~-~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~ 295 (321)
T PRK10262 228 ------NSDNIESLDVAGLFVAIGHSPNTA----IFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ 295 (321)
T ss_pred ------CCCeEEEEECCEEEEEeCCccChh----Hhhc-cccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcce
Confidence 023345899999999999999872 2222 3444 46889888621 1789999999999998654 45
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 396 IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+. .|+.+|..+|..|.++|.+.
T Consensus 296 ~~-~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 296 AI-TSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred EE-EEehhHHHHHHHHHHHHHhc
Confidence 55 69999999999999999764
No 32
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.5e-31 Score=271.21 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=193.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC--------------------------Ch
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------ET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~--------------------------~~ 71 (483)
.++|+||||||||+++|..|++.| .+|+|||+.+.+|| .+.+|+.|... ..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI 81 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 589999999999999999999999 99999999876776 45566555421 01
Q ss_pred HHHHH-----------HHHHHHhcCCeEEEeCeEEc---eE--EEecce---eeccCEEEEccCCCCCC-CCCCCCCCCC
Q 011535 72 KIVIN-----------QFSRVVQHERCSFFGNVTLG---SS--VSLSEL---RQLYHVVVLAYGAESDR-ALGIPGEDLI 131 (483)
Q Consensus 72 ~~~~~-----------~~~~~~~~~~v~~~~~~~v~---~~--~~~~~~---~~~yd~vvlAtG~~~~~-~~~ipg~~~~ 131 (483)
..+.. .+...++..+++++.+...- .. +...++ ...||+||||||+ .|+ ++.+++ +.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~p~~~~-~~~ 159 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGS-RPIQLPFIPH-DDP 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCC-CCCCCCCCCC-CCC
Confidence 11111 12234556789988776431 12 222233 3479999999999 454 344454 334
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
+++++.+.... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+
T Consensus 160 ~v~~~~~~~~~----------~---~~~~~vvIiGgG~iG~E~A~~l~~--------------------~G-~~Vtlv~~ 205 (471)
T PRK06467 160 RIWDSTDALEL----------K---EVPKRLLVMGGGIIGLEMGTVYHR--------------------LG-SEVDVVEM 205 (471)
T ss_pred cEEChHHhhcc----------c---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CCEEEEec
Confidence 55544433311 0 135899999999999999999885 34 57999998
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
.+.+...+.. + ....+.+.|. ++ +.++++..+
T Consensus 206 ~~~il~~~d~-~---------------------------------~~~~~~~~l~-------------~~-v~i~~~~~v 237 (471)
T PRK06467 206 FDQVIPAADK-D---------------------------------IVKVFTKRIK-------------KQ-FNIMLETKV 237 (471)
T ss_pred CCCCCCcCCH-H---------------------------------HHHHHHHHHh-------------hc-eEEEcCCEE
Confidence 8765432221 1 1111222222 44 888988888
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~ 371 (483)
.++. . .++.+ .+++... .++.+++++|.||+|+|++|+.- .+ .....|+.++++|++.+|
T Consensus 238 ~~i~--~-~~~~~-~v~~~~~--------------~~~~~~i~~D~vi~a~G~~pn~~-~l-~~~~~gl~~~~~G~I~Vd 297 (471)
T PRK06467 238 TAVE--A-KEDGI-YVTMEGK--------------KAPAEPQRYDAVLVAVGRVPNGK-LL-DAEKAGVEVDERGFIRVD 297 (471)
T ss_pred EEEE--E-cCCEE-EEEEEeC--------------CCcceEEEeCEEEEeecccccCC-cc-ChhhcCceECCCCcEeeC
Confidence 8886 3 22222 2332210 12235799999999999999862 11 235668889899999999
Q ss_pred CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 372 ~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|+.|+|||+|||+..+.... .|+.+|+.+|.+|+.
T Consensus 298 ~~--~~t~~p~VyAiGDv~~~~~la~-~A~~eG~~aa~~i~g 336 (471)
T PRK06467 298 KQ--CRTNVPHIFAIGDIVGQPMLAH-KGVHEGHVAAEVIAG 336 (471)
T ss_pred CC--cccCCCCEEEehhhcCCcccHH-HHHHHHHHHHHHHcC
Confidence 88 7799999999999987666555 799999999999864
No 33
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.4e-30 Score=268.29 Aligned_cols=281 Identities=17% Similarity=0.177 Sum_probs=192.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCC--------------------------C-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------E- 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~--------------------------~- 70 (483)
.++|+||||||||++||..+++.| .+|+|||+. .+||. ...|+.|... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG--AKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 479999999999999999999999 999999985 56664 4456656431 0
Q ss_pred ----------hHHHHHHHHHHHhcCCeEEEeCeEEce---EEEe--cceeeccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 011535 71 ----------TKIVINQFSRVVQHERCSFFGNVTLGS---SVSL--SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (483)
Q Consensus 71 ----------~~~~~~~~~~~~~~~~v~~~~~~~v~~---~~~~--~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~ 135 (483)
...+...+...++..+++++.+..... .+.. ......||+||||||+ .|..+++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs-~p~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGG-RPQKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCC-cCCCCCCCCccc--eec
Confidence 011223445556677899887754311 2222 1123479999999999 577778888642 222
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.+... +. ..+++++|||+|.+|+|+|..+.+ .+ .+|+++.+.+.+
T Consensus 156 ~~~~~~----------l~---~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~~ 201 (446)
T TIGR01424 156 SNEAFH----------LP---TLPKSILILGGGYIAVEFAGIWRG--------------------LG-VQVTLIYRGELI 201 (446)
T ss_pred hHHhhc----------cc---ccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEeCCCC
Confidence 222110 00 136799999999999999999875 33 579999988654
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...+. +.....+.+.|. ++||+++++..+.++.
T Consensus 202 l~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~ 234 (446)
T TIGR01424 202 LRGFD----------------------------------DDMRALLARNME-------------GRGIRIHPQTSLTSIT 234 (446)
T ss_pred CcccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE
Confidence 32221 111112223332 6789999999888886
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. +++.+ .+.+. ++.++++|.||+|+|++|+.. .+ ..+..|+.++++|++.+|++
T Consensus 235 --~-~~~~~-~v~~~------------------~g~~i~~D~viva~G~~pn~~-~l-~l~~~g~~~~~~G~i~vd~~-- 288 (446)
T TIGR01424 235 --K-TDDGL-KVTLS------------------HGEEIVADVVLFATGRSPNTK-GL-GLEAAGVELNDAGAIAVDEY-- 288 (446)
T ss_pred --E-cCCeE-EEEEc------------------CCcEeecCEEEEeeCCCcCCC-cC-CccccCeEECCCCcEEeCCC--
Confidence 3 12211 12211 123799999999999999862 11 23567888888999999998
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|++|+|||+|||+.++.-.. .|++||+.+|++|+.
T Consensus 289 ~~Ts~~~IyA~GD~~~~~~l~~-~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDRINLTP-VAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCCccchh-HHHHHHHHHHHHHhc
Confidence 7899999999999986555444 799999999999964
No 34
>PRK06116 glutathione reductase; Validated
Probab=99.98 E-value=1.6e-30 Score=268.56 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=193.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC---------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP---------------------------E 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~---------------------------~ 70 (483)
.++|+||||||||++||..|++.+ .+|+|||+. .+|| .++.|+.|... .
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 479999999999999999999999 999999986 5565 34445444310 0
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
... +...+.+.+...+++++.+.... ..+.++.....||+||||||+ .|..+++||.+ .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~g~~--~~~~~ 157 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGG-RPSIPDIPGAE--YGITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCcc--eeEch
Confidence 111 11223344556789988876432 234443334579999999998 57777888864 23333
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++..+ . ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+.
T Consensus 158 ~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l 203 (450)
T PRK06116 158 DGFFAL----------E---ELPKRVAVVGAGYIAVEFAGVLNG--------------------LG-SETHLFVRGDAPL 203 (450)
T ss_pred hHhhCc----------c---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCCCc
Confidence 322110 0 135899999999999999999875 34 5799999887543
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..+. +...+.+.+.|. ++||+++++..+.++.
T Consensus 204 ~~~~----------------------------------~~~~~~l~~~L~-------------~~GV~i~~~~~V~~i~- 235 (450)
T PRK06116 204 RGFD----------------------------------PDIRETLVEEME-------------KKGIRLHTNAVPKAVE- 235 (450)
T ss_pred cccC----------------------------------HHHHHHHHHHHH-------------HCCcEEECCCEEEEEE-
Confidence 2222 111222223332 6799999999999997
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~ 376 (483)
.++++.+ .+.+. +| +++++|.||+|+|++|+.- .+ ..+..|+.++++|++.+|++ +
T Consensus 236 -~~~~g~~-~v~~~----------------~g--~~i~~D~Vv~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~vd~~--~ 291 (450)
T PRK06116 236 -KNADGSL-TLTLE----------------DG--ETLTVDCLIWAIGREPNTD-GL-GLENAGVKLNEKGYIIVDEY--Q 291 (450)
T ss_pred -EcCCceE-EEEEc----------------CC--cEEEeCEEEEeeCCCcCCC-CC-CchhcCceECCCCcEecCCC--C
Confidence 3123322 12221 22 3799999999999999762 11 13556888888999999988 7
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++|+|||+|||+.++.... .|+.+|+.+|.+|..
T Consensus 292 ~Ts~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 327 (450)
T PRK06116 292 NTNVPGIYAVGDVTGRVELTP-VAIAAGRRLSERLFN 327 (450)
T ss_pred CcCCCCEEEEeecCCCcCcHH-HHHHHHHHHHHHHhC
Confidence 799999999999986655554 799999999999964
No 35
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.98 E-value=2.5e-30 Score=268.09 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=198.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCCCC--------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP--------------------------E 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~~~--------------------------~ 70 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.+||.. ..|+.|... .
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 4589999999999999999999999 9999999987777754 445544211 1
Q ss_pred hHHHH-----------HHHHHHHhcCCeEEEeCeEEc---e--EEEecce---eeccCEEEEccCCCCCCCCCCCCCCCC
Q 011535 71 TKIVI-----------NQFSRVVQHERCSFFGNVTLG---S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLI 131 (483)
Q Consensus 71 ~~~~~-----------~~~~~~~~~~~v~~~~~~~v~---~--~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~ 131 (483)
..++. ..+.+.+...+++++.+.... . .+...++ ...||+||||||+ .|..|++++.+.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs-~p~~p~~~~~~~~ 160 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGS-RPYRPPDVDFDHP 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCCCCC
Confidence 11111 123344556788888776531 1 1222232 3469999999998 5666677776666
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
+++++.++.... ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|
T Consensus 161 ~v~~~~~~~~~~-------------~~~~~v~IiGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~ 206 (461)
T PRK05249 161 RIYDSDSILSLD-------------HLPRSLIIYGAGVIGCEYASIFAA--------------------LG-VKVTLINT 206 (461)
T ss_pred eEEcHHHhhchh-------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEec
Confidence 677665543210 146899999999999999999985 33 57999999
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
++.+...+. +.....+.+.+. ++||+++++..+
T Consensus 207 ~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gI~v~~~~~v 239 (461)
T PRK05249 207 RDRLLSFLD----------------------------------DEISDALSYHLR-------------DSGVTIRHNEEV 239 (461)
T ss_pred CCCcCCcCC----------------------------------HHHHHHHHHHHH-------------HcCCEEEECCEE
Confidence 876532222 111122223332 668999999999
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~ 371 (483)
.++. . +++. +.+.. .++ .++++|.||+|+|++|+.. . ...+..++.++++|++.+|
T Consensus 240 ~~i~--~-~~~~---~~v~~--------------~~g--~~i~~D~vi~a~G~~p~~~-~-l~l~~~g~~~~~~G~i~vd 295 (461)
T PRK05249 240 EKVE--G-GDDG---VIVHL--------------KSG--KKIKADCLLYANGRTGNTD-G-LNLENAGLEADSRGQLKVN 295 (461)
T ss_pred EEEE--E-eCCe---EEEEE--------------CCC--CEEEeCEEEEeecCCcccc-C-CCchhhCcEecCCCcEeeC
Confidence 8886 3 2222 22211 022 3799999999999999862 1 1235678888889999999
Q ss_pred CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 372 ~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|+.|+|||+|||+..+.... .|+.+|+.+|.+|..
T Consensus 296 ~~--~~t~~~~IyAiGD~~~~~~~~~-~A~~~g~~aa~~i~g 334 (461)
T PRK05249 296 EN--YQTAVPHIYAVGDVIGFPSLAS-ASMDQGRIAAQHAVG 334 (461)
T ss_pred CC--cccCCCCEEEeeecCCCcccHh-HHHHHHHHHHHHHcC
Confidence 87 7899999999999987666555 799999999999973
No 36
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.97 E-value=5.8e-30 Score=269.63 Aligned_cols=285 Identities=19% Similarity=0.230 Sum_probs=197.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccC---CCC--CChHHHHHHHHHHHhcCCeEEEeC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVA---PDH--PETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~---p~~--~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.++|+|||||||||+||..|++.+ ++|+|||+. ..||.+.. ... |+. ....++...+.+.++..+++++..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~ 80 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence 489999999999999999999998 999999996 45665432 111 322 233567777888888888888654
Q ss_pred eEEce-------EEEecceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 93 VTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 93 ~~v~~-------~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.+... .+...+....|++||||||+ .++.+++||.+ ..+++.... ... ....+++|
T Consensus 81 ~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa-~p~~~~ipG~~~~~~~~v~~~~~----~~~---------~~~~g~~V 146 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARGDYKTLAVLIATGA-SPRKLGFPGEEEFTGRGVAYCAT----CDG---------EFFTGMDV 146 (555)
T ss_pred EEEEEEecCCEEEEEecCCEEEEeEEEECCCC-ccCCCCCCCHHHhCCceEEEEee----cCh---------hhcCCCEE
Confidence 43321 12233334568899999999 57888899864 223322111 110 11257899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ ...+|+++.|.+.+.. .
T Consensus 147 vVIGgG~~g~E~A~~L~~---------------------~g~~Vtli~~~~~~~~--~---------------------- 181 (555)
T TIGR03143 147 FVIGGGFAAAEEAVFLTR---------------------YASKVTVIVREPDFTC--A---------------------- 181 (555)
T ss_pred EEECCCHHHHHHHHHHHc---------------------cCCEEEEEEeCCcccc--C----------------------
Confidence 999999999999999875 3468999998864210 0
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.. ..+.+. ..+||+++++..+.++. + ++.+..+.+...
T Consensus 182 ------------~~----~~~~~~------------~~~gV~i~~~~~V~~i~--~--~~~v~~v~~~~~---------- 219 (555)
T TIGR03143 182 ------------KL----IAEKVK------------NHPKIEVKFNTELKEAT--G--DDGLRYAKFVNN---------- 219 (555)
T ss_pred ------------HH----HHHHHH------------hCCCcEEEeCCEEEEEE--c--CCcEEEEEEEEC----------
Confidence 00 001111 15689999999999997 4 455544444321
Q ss_pred eeccCCceEE--EecCe----EEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-Ccc
Q 011535 323 YAVGTGEFED--LDCGM----VLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTG 395 (483)
Q Consensus 323 ~~~~~g~~~~--i~~D~----vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~ 395 (483)
.+|+..+ ++||. ||+++|++|++ .+... ++.++++|+|.+|++ ++|++|+|||+|||+.. +..
T Consensus 220 ---~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~----~l~~~-~l~l~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~~ 289 (555)
T TIGR03143 220 ---VTGEITEYKAPKDAGTFGVFVFVGYAPSS----ELFKG-VVELDKRGYIPTNED--METNVPGVYAAGDLRPKELRQ 289 (555)
T ss_pred ---CCCCEEEEeccccccceEEEEEeCCCCCh----hHHhh-hcccCCCCeEEeCCc--cccCCCCEEEceeccCCCcch
Confidence 1233333 34776 99999999987 23332 567788899999987 78999999999999753 344
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 396 IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+. .|+.+|+.+|.+|.++|.+.
T Consensus 290 v~-~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 290 VV-TAVADGAIAATSAERYVKEL 311 (555)
T ss_pred he-eHHhhHHHHHHHHHHHHHhh
Confidence 54 79999999999999999754
No 37
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.97 E-value=4e-30 Score=268.86 Aligned_cols=287 Identities=20% Similarity=0.268 Sum_probs=204.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CCC--CCChHHHHHHHHHHHhcCCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p~--~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
...++|+||||||||++||.+|++.+ .+|+||++ .+||.+.. ++ .+. +....++...+.+.++..+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 45689999999999999999999999 99999975 46665531 11 011 12445677788888888899998
Q ss_pred eCeEEce--------EEEecce-eeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 91 ~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
.+..+.. .+.+.++ ...||+||+|||+ .++.+++||.+ ..+++... +.+ .....
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa-~~~~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~ 351 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA-RWRKLGVPGEKEYIGKGVAYCP--------HCD-----GPFFK 351 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC-CcCCCCCCCHHHcCCCeEEEee--------ccC-----hhhcC
Confidence 8765421 2333333 2469999999999 47778888853 12222111 100 01125
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|+. ..++|+++.+.+.+..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~---------------------~g~~Vtli~~~~~l~~--------------------- 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG---------------------IVRHVTVLEFADELKA--------------------- 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh---------------------cCcEEEEEEeCCcCCh---------------------
Confidence 7899999999999999999975 3468999987654310
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
.+.+.+.+. ...||+++++..+.++. + +++++.++.+.+.
T Consensus 390 -------------------~~~l~~~l~------------~~~gV~i~~~~~v~~i~--~-~~~~v~~v~~~~~------ 429 (515)
T TIGR03140 390 -------------------DKVLQDKLK------------SLPNVDILTSAQTTEIV--G-DGDKVTGIRYQDR------ 429 (515)
T ss_pred -------------------hHHHHHHHh------------cCCCCEEEECCeeEEEE--c-CCCEEEEEEEEEC------
Confidence 000112221 03689999999999997 4 3467777776541
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+++.++++||.||+|+|++|++ .+.+.. +..+++|+|.+|++ ++|++|+|||+|||+..+...+.
T Consensus 430 -------~~~~~~~i~~D~vi~a~G~~Pn~----~~l~~~-~~~~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~~~~ 495 (515)
T TIGR03140 430 -------NSGEEKQLDLDGVFVQIGLVPNT----EWLKDA-VELNRRGEIVIDER--GRTSVPGIFAAGDVTTVPYKQII 495 (515)
T ss_pred -------CCCcEEEEEcCEEEEEeCCcCCc----hHHhhh-cccCCCCeEEECCC--CCCCCCCEEEcccccCCccceEE
Confidence 13445689999999999999987 343444 66777899999998 77999999999999876654333
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 011535 399 TNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~ 417 (483)
.|+.+|..+|.+|..+|..
T Consensus 496 ~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 496 IAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred EEEccHHHHHHHHHHHHhh
Confidence 7999999999999998753
No 38
>PLN02507 glutathione reductase
Probab=99.97 E-value=2.4e-30 Score=268.85 Aligned_cols=284 Identities=18% Similarity=0.178 Sum_probs=192.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec---------CCCCCCc-eecccCCCCC-----------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---------LPTPFGL-VRSGVAPDHP----------------- 69 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~---------~~~~ggl-~~~g~~p~~~----------------- 69 (483)
...++|+||||||||+++|..+++.| .+|+|||+ ...+||. +..|+.|...
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999 99999996 2345664 3445544211
Q ss_pred ----------ChHHHH-----------HHHHHHHhcCCeEEEeCeEE--c---eEEEeccee---eccCEEEEccCCCCC
Q 011535 70 ----------ETKIVI-----------NQFSRVVQHERCSFFGNVTL--G---SSVSLSELR---QLYHVVVLAYGAESD 120 (483)
Q Consensus 70 ----------~~~~~~-----------~~~~~~~~~~~v~~~~~~~v--~---~~~~~~~~~---~~yd~vvlAtG~~~~ 120 (483)
....+. ..+...+...+++++.+... . ..++..++. ..||+||||||+ .+
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs-~p 179 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGS-RA 179 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCC-CC
Confidence 111111 12234455578888887542 1 223333432 468999999999 57
Q ss_pred CCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc
Q 011535 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (483)
Q Consensus 121 ~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~ 200 (483)
..+++||.+. ..++.+... +. ..+++++|||+|++|+|+|..|.+
T Consensus 180 ~~p~ipG~~~--~~~~~~~~~----------l~---~~~k~vvVIGgG~ig~E~A~~l~~-------------------- 224 (499)
T PLN02507 180 QRPNIPGKEL--AITSDEALS----------LE---ELPKRAVVLGGGYIAVEFASIWRG-------------------- 224 (499)
T ss_pred CCCCCCCccc--eechHHhhh----------hh---hcCCeEEEECCcHHHHHHHHHHHH--------------------
Confidence 7778888542 222222111 00 135799999999999999999875
Q ss_pred CCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCc
Q 011535 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ 280 (483)
Q Consensus 201 ~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~ 280 (483)
. ..+|+|+.|.+.....|. +.....+.+.|. +
T Consensus 225 ~-G~~Vtli~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~ 256 (499)
T PLN02507 225 M-GATVDLFFRKELPLRGFD----------------------------------DEMRAVVARNLE-------------G 256 (499)
T ss_pred c-CCeEEEEEecCCcCcccC----------------------------------HHHHHHHHHHHH-------------h
Confidence 3 358999998865432222 111222223332 6
Q ss_pred ceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCc
Q 011535 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~ 360 (483)
+||+++++..+.++. . +++.+ .+.+ +++.++++|.||+++|++|+.. .+ ..+..|+
T Consensus 257 ~GI~i~~~~~V~~i~--~-~~~~~-~v~~------------------~~g~~i~~D~vl~a~G~~pn~~-~l-~l~~~gl 312 (499)
T PLN02507 257 RGINLHPRTNLTQLT--K-TEGGI-KVIT------------------DHGEEFVADVVLFATGRAPNTK-RL-NLEAVGV 312 (499)
T ss_pred CCCEEEeCCEEEEEE--E-eCCeE-EEEE------------------CCCcEEEcCEEEEeecCCCCCC-CC-CchhhCc
Confidence 789999999999987 3 22322 1211 1224799999999999999872 11 1356788
Q ss_pred ccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 361 ~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.++++|++.+|++ ++|+.|+|||+|||+.++.... .|++||+.+|+||..
T Consensus 313 ~~~~~G~I~Vd~~--~~Ts~p~IyAiGDv~~~~~l~~-~A~~qg~~aa~ni~g 362 (499)
T PLN02507 313 ELDKAGAVKVDEY--SRTNIPSIWAIGDVTNRINLTP-VALMEGTCFAKTVFG 362 (499)
T ss_pred EECCCCcEecCCC--CcCCCCCEEEeeEcCCCCccHH-HHHHHHHHHHHHHcC
Confidence 8888999999988 7799999999999987665554 799999999999863
No 39
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.97 E-value=5.9e-30 Score=267.94 Aligned_cols=288 Identities=20% Similarity=0.251 Sum_probs=207.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CC--CCCChHHHHHHHHHHHhcCCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--AP--DHPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p--~~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
...++|+||||||||++||.+|++.| ++|+||++. +||.+.. ++ .+ .+....++...+.+.++..+++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG--IRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34689999999999999999999999 999999864 6776531 11 01 123456788888888888899988
Q ss_pred eCeEEce--------EEEecce-eeccCEEEEccCCCCCCCCCCCCCC-C--CCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED-L--IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 91 ~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~-~--~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
.++.+.. .+.+.++ ...||.||+|||+ .++.+++||.+ . .+++... +.+ . ....
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~-~~r~~~ipG~~~~~~~~v~~~~--------~~~----~-~~~~ 350 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA-RWRNMNVPGEDEYRNKGVAYCP--------HCD----G-PLFK 350 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC-CcCCCCCCCHHHhcCceEEEee--------ccC----c-hhcC
Confidence 8765522 1223333 3469999999999 57778888853 1 2222111 111 0 1126
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|.. ..++|+++.|++.+..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~---------------------~~~~Vtlv~~~~~l~~--------------------- 388 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG---------------------IVKHVTVLEFAPELKA--------------------- 388 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEEECccccc---------------------
Confidence 7899999999999999999985 3478999988764310
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
. +.+.+.+. ...||++++++.+.++. + +++++..+++.+.
T Consensus 389 ----------------~---~~l~~~l~------------~~~gI~i~~~~~v~~i~--~-~~g~v~~v~~~~~------ 428 (517)
T PRK15317 389 ----------------D---QVLQDKLR------------SLPNVTIITNAQTTEVT--G-DGDKVTGLTYKDR------ 428 (517)
T ss_pred ----------------c---HHHHHHHh------------cCCCcEEEECcEEEEEE--c-CCCcEEEEEEEEC------
Confidence 0 00111111 13689999999999998 4 3467777776541
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+++..+++||.|++++|++|++ .|.+.. +..+++|++.+|++ ++|++|+|||+|||+..+...+.
T Consensus 429 -------~~g~~~~i~~D~v~~~~G~~p~~----~~l~~~-v~~~~~g~i~vd~~--l~Ts~p~IyAaGDv~~~~~k~~~ 494 (517)
T PRK15317 429 -------TTGEEHHLELEGVFVQIGLVPNT----EWLKGT-VELNRRGEIIVDAR--GATSVPGVFAAGDCTTVPYKQII 494 (517)
T ss_pred -------CCCcEEEEEcCEEEEeECCccCc----hHHhhh-eeeCCCCcEEECcC--CCCCCCCEEECccccCCCCCEEE
Confidence 13455689999999999999987 344444 67788899999988 67999999999999886644333
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 011535 399 TNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~ 418 (483)
.|+.+|..+|.++.++|...
T Consensus 495 ~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 495 IAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred EhhhhHHHHHHHHHHHHhhc
Confidence 89999999999999998754
No 40
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=9.4e-30 Score=263.79 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=192.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC--------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------E 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~--------------------------~ 70 (483)
..++|+||||||||++||..|++.+ .+|+|||+.+ .|| ++..|+.|.+. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 3579999999999999999999999 9999999987 666 45666656421 1
Q ss_pred hHHHHHH-----------HHHHHhcCCeEEEeCeEEc---eEEEec--c--eeeccCEEEEccCCCCCCCCCCCCCCCCC
Q 011535 71 TKIVINQ-----------FSRVVQHERCSFFGNVTLG---SSVSLS--E--LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (483)
Q Consensus 71 ~~~~~~~-----------~~~~~~~~~v~~~~~~~v~---~~~~~~--~--~~~~yd~vvlAtG~~~~~~~~ipg~~~~~ 132 (483)
..++..+ +...++..+++++.+.... ..+++. + ....||+||||||+. +.. +||.+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~-p~~--~pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSR-PRE--LPGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCC-CCC--CCCCCCCC
Confidence 1222222 3445566789988876542 123332 1 235799999999994 433 34544322
Q ss_pred --eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 133 --VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 133 --v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
+++..+... +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 157 ~~v~~~~~~~~----------~~---~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g-~~Vtli~ 202 (462)
T PRK06416 157 RVIWTSDEALN----------LD---EVPKSLVVIGGGYIGVEFASAYAS--------------------LG-AEVTIVE 202 (462)
T ss_pred CeEEcchHhhC----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEE
Confidence 333322211 01 135799999999999999999875 34 4799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 290 (483)
|.+.+...+. +.....+.+.+. ++||+++++..
T Consensus 203 ~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~ 235 (462)
T PRK06416 203 ALPRILPGED----------------------------------KEISKLAERALK-------------KRGIKIKTGAK 235 (462)
T ss_pred cCCCcCCcCC----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCCE
Confidence 8875432211 111122223332 67899999999
Q ss_pred cceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee
Q 011535 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 291 ~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v 370 (483)
+.++. . +++.+ .+.+.+ .++.+++++|.||+|+|++|+.. .+. .+..|+..+ +|++.+
T Consensus 236 V~~i~--~-~~~~v-~v~~~~---------------gg~~~~i~~D~vi~a~G~~p~~~-~l~-l~~~gl~~~-~g~i~v 293 (462)
T PRK06416 236 AKKVE--Q-TDDGV-TVTLED---------------GGKEETLEADYVLVAVGRRPNTE-NLG-LEELGVKTD-RGFIEV 293 (462)
T ss_pred EEEEE--E-eCCEE-EEEEEe---------------CCeeEEEEeCEEEEeeCCccCCC-CCC-chhcCCeec-CCEEeE
Confidence 99997 3 23322 122211 12335799999999999999862 111 245678787 899999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.||..
T Consensus 294 d~~--~~t~~~~VyAiGD~~~~~~~~~-~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 294 DEQ--LRTNVPNIYAIGDIVGGPMLAH-KASAEGIIAAEAIAG 333 (462)
T ss_pred CCC--CccCCCCEEEeeecCCCcchHH-HHHHHHHHHHHHHcC
Confidence 988 6799999999999987665555 799999999999975
No 41
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=7.2e-31 Score=264.11 Aligned_cols=300 Identities=15% Similarity=0.196 Sum_probs=199.0
Q ss_pred eEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+|||||||+||+.+|..|.++ .++.+|+|||++++. +....+++..+.....++...+.++++..+++|+.+.+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999765 467999999998763 22222222233334556666777788888999988766533
Q ss_pred ----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeec---CCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 98 ----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN---GHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 98 ----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
.+.+.++. ..||+||||||+ .+..+++||. .++++....+..... ...+. .. +...+++++|||+|.
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~-~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~vvVvG~G~ 155 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGS-TTPLSGVEGA-ADLAVPVKPIENFLARWEALLES--AD-APPGTKRLAVVGGGA 155 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCC-CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHH--Hh-cCCCCceEEEECCCH
Confidence 34454443 469999999999 5777788884 333433222111100 00000 00 011357999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCc-cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~-~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 248 (483)
+|+|+|..|.+ .+++.+. .+|+++ +.+.+...+.
T Consensus 156 ~g~E~A~~l~~----------------~~~~~g~~~~V~li-~~~~~l~~~~---------------------------- 190 (364)
T TIGR03169 156 AGVEIALALRR----------------RLPKRGLRGQVTLI-AGASLLPGFP---------------------------- 190 (364)
T ss_pred HHHHHHHHHHH----------------HHHhcCCCceEEEE-eCCcccccCC----------------------------
Confidence 99999999974 1222232 479988 4433221111
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCC
Q 011535 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (483)
Q Consensus 249 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g 328 (483)
+.....+.+.|. +.||+++++..+.++. . + .+.+. +|
T Consensus 191 ------~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~---~---~v~~~----------------~g 227 (364)
T TIGR03169 191 ------AKVRRLVLRLLA-------------RRGIEVHEGAPVTRGP--D---G---ALILA----------------DG 227 (364)
T ss_pred ------HHHHHHHHHHHH-------------HCCCEEEeCCeeEEEc--C---C---eEEeC----------------CC
Confidence 111222223333 6789999998888885 2 2 23221 12
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCc-ccCceeeeccCCCC-----CcchhHhhHH
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWLKRG-----PTGIIATNLY 402 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t-~~p~vya~Gd~~~g-----~~~~~~~a~~ 402 (483)
.++++|.||+|+|++|++ +....++..+++|++.+|++ +++ +.|+|||+|||+.. +.... .|+.
T Consensus 228 --~~i~~D~vi~a~G~~p~~-----~l~~~gl~~~~~g~i~vd~~--l~~~~~~~Iya~GD~~~~~~~~~~~~~~-~A~~ 297 (364)
T TIGR03169 228 --RTLPADAILWATGARAPP-----WLAESGLPLDEDGFLRVDPT--LQSLSHPHVFAAGDCAVITDAPRPKAGV-YAVR 297 (364)
T ss_pred --CEEecCEEEEccCCChhh-----HHHHcCCCcCCCCeEEECCc--cccCCCCCEEEeeeeeecCCCCCCCchH-HHHH
Confidence 379999999999999976 33445677788899999987 555 89999999999852 22233 6999
Q ss_pred HHHHHHHHHHHHHhcCcCCCC
Q 011535 403 CAEETVASISEDLEQGVLASS 423 (483)
Q Consensus 403 ~g~~~a~~I~~~l~~~~~~~~ 423 (483)
||+.+|.||.+.+.+.+++.+
T Consensus 298 ~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 298 QAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred hHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999988876665
No 42
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=1.1e-29 Score=261.52 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=196.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCc-eecccCCCCC---------ChHHHHH-----------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHP---------ETKIVIN----------- 76 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl-~~~g~~p~~~---------~~~~~~~----------- 76 (483)
.++|+||||||||++||..|++.+ .+|+|||+.+. +||. +..|+.|.+. ...++..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 99999999875 4663 5667767543 1122211
Q ss_pred HHHHHHhcCCeEEEeCeEE---ceEEEecc----eeeccCEEEEccCCCCCCCCCCCCCC-CCCeeecceeeeeecCCCC
Q 011535 77 QFSRVVQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHPD 148 (483)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~v---~~~~~~~~----~~~~yd~vvlAtG~~~~~~~~ipg~~-~~~v~~a~~~~~~~~~~~~ 148 (483)
...+.+...+++++.+... .+.+.+.. ....||+||||||+ .++.+++||.+ .++++++.++..+.
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs-~~~~p~i~G~~~~~~v~~~~~~~~~~----- 154 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGA-VSNVLPIPGLADSKHVYDSTGIQSLE----- 154 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCC-CCCCCCCCCcCCCCcEEchHHHhcch-----
Confidence 1223455668888877642 12233321 23479999999999 57778899963 56677665544211
Q ss_pred CCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHh
Q 011535 149 GKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (483)
Q Consensus 149 ~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~ 228 (483)
..+++|+|||+|++|+|+|..|++ .+ .+|+++.|.+.+...+. +
T Consensus 155 --------~~~~~vvIIGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~-~------ 198 (438)
T PRK07251 155 --------TLPERLGIIGGGNIGLEFAGLYNK--------------------LG-SKVTVLDAASTILPREE-P------ 198 (438)
T ss_pred --------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCccCCCCC-H------
Confidence 135799999999999999999875 34 47999999875432211 1
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEE
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~ 308 (483)
.....+.+.+. ++||+++++..+.++. . +++. +.
T Consensus 199 ---------------------------~~~~~~~~~l~-------------~~GI~i~~~~~V~~i~--~-~~~~---v~ 232 (438)
T PRK07251 199 ---------------------------SVAALAKQYME-------------EDGITFLLNAHTTEVK--N-DGDQ---VL 232 (438)
T ss_pred ---------------------------HHHHHHHHHHH-------------HcCCEEEcCCEEEEEE--e-cCCE---EE
Confidence 11112222332 6789999999999987 3 2222 21
Q ss_pred EeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeecc
Q 011535 309 FEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGW 388 (483)
Q Consensus 309 ~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd 388 (483)
+.. ++ .++++|.||+|+|++|+. ..+. .+..++..+++|.+.+|++ ++|+.|+|||+||
T Consensus 233 v~~---------------~g--~~i~~D~viva~G~~p~~-~~l~-l~~~~~~~~~~g~i~vd~~--~~t~~~~IyaiGD 291 (438)
T PRK07251 233 VVT---------------ED--ETYRFDALLYATGRKPNT-EPLG-LENTDIELTERGAIKVDDY--CQTSVPGVFAVGD 291 (438)
T ss_pred EEE---------------CC--eEEEcCEEEEeeCCCCCc-ccCC-chhcCcEECCCCcEEECCC--cccCCCCEEEeee
Confidence 111 12 379999999999999975 2222 2345677778899999987 7899999999999
Q ss_pred CCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 389 LKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 389 ~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.++.... .+..+|+.++.++..
T Consensus 292 ~~~~~~~~~-~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 292 VNGGPQFTY-ISLDDFRIVFGYLTG 315 (438)
T ss_pred cCCCcccHh-HHHHHHHHHHHHHcC
Confidence 987766666 789999988887764
No 43
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=8.3e-31 Score=270.59 Aligned_cols=289 Identities=14% Similarity=0.167 Sum_probs=195.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC----CceecccCCC-CCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPD-HPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g----gl~~~g~~p~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
++|+|||||+||+++|..|++.+++.+|+|||+++.++ ++..+ . ++ +....++.....+.+...+++++.+..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYF-V-GGFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceE-e-ccccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 48999999999999999999987778999999998753 11111 1 22 223344444445556667899887654
Q ss_pred Ec------eEEEecc---e-eec--cCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 95 LG------SSVSLSE---L-RQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 95 v~------~~~~~~~---~-~~~--yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
+. +.+.+.+ . ... ||+||||||+ .+..+++||.+.+++++...+.....-.. .-.+. .+++|
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~g~~~~~v~~~~~~~~~~~l~~----~l~~~-~~~~v 152 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA-RPIIPPIKNINLENVYTLKSMEDGLALKE----LLKDE-EIKNI 152 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHH----HHhhc-CCCEE
Confidence 42 2233322 1 233 9999999999 57777889987777776554322111000 00001 46899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-cCCHHHHHHHhcCCCeeEEecccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-ACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
+|||+|++|+|+|..|.+ .+ ++|+++.+.+.+.. .|.
T Consensus 153 vVvGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~~--------------------- 190 (444)
T PRK09564 153 VIIGAGFIGLEAVEAAKH--------------------LG-KNVRIIQLEDRILPDSFD--------------------- 190 (444)
T ss_pred EEECCCHHHHHHHHHHHh--------------------cC-CcEEEEeCCcccCchhcC---------------------
Confidence 999999999999998875 33 57999988764321 111
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
+.....+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 191 -------------~~~~~~l~~~l~-------------~~gI~v~~~~~v~~i~--~--~~~~~~v~~------------ 228 (444)
T PRK09564 191 -------------KEITDVMEEELR-------------ENGVELHLNEFVKSLI--G--EDKVEGVVT------------ 228 (444)
T ss_pred -------------HHHHHHHHHHHH-------------HCCCEEEcCCEEEEEe--c--CCcEEEEEe------------
Confidence 111222223332 6789999999999886 3 444332221
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--------
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------- 393 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-------- 393 (483)
.+ .+++||.||+|+|++|+. ++.+..|+..+++|++.+|++ ++|+.|+|||+|||+..+
T Consensus 229 -----~~--~~i~~d~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~ 295 (444)
T PRK09564 229 -----DK--GEYEADVVIVATGVKPNT----EFLEDTGLKTLKNGAIIVDEY--GETSIENIYAAGDCATIYNIVSNKNV 295 (444)
T ss_pred -----CC--CEEEcCEEEECcCCCcCH----HHHHhcCccccCCCCEEECCC--cccCCCCEEEeeeEEEEEeccCCCee
Confidence 11 269999999999999975 456777888888899999987 678999999999998531
Q ss_pred -cchhHhhHHHHHHHHHHHHH
Q 011535 394 -TGIIATNLYCAEETVASISE 413 (483)
Q Consensus 394 -~~~~~~a~~~g~~~a~~I~~ 413 (483)
......|+.||+.+|.||..
T Consensus 296 ~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 296 YVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred eccchHHHHHHHHHHHHHhcC
Confidence 11233689999999999874
No 44
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=9.7e-30 Score=262.04 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=195.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCc-eecccCCCCC---------ChH-------HHHHHH--
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHP---------ETK-------IVINQF-- 78 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl-~~~g~~p~~~---------~~~-------~~~~~~-- 78 (483)
.++|+||||||||++||..|++.+ .+|+|||+.+. .||. ...|+.|... ... .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 99999999864 5664 3566666532 111 111112
Q ss_pred ---HHHHhcCCeEEEeCeEEc-----eEEEecce--eeccCEEEEccCCCCCCCCCCCCCC-CCCeeecceeeeeecCCC
Q 011535 79 ---SRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHP 147 (483)
Q Consensus 79 ---~~~~~~~~v~~~~~~~v~-----~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~-~~~v~~a~~~~~~~~~~~ 147 (483)
.++.+..+++++.+.... ..+...+. ...||+||||||+ .+..+++||.+ .++++++..+...
T Consensus 81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs-~p~~p~i~G~~~~~~v~~~~~~~~~----- 154 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGA-QTVVPPIPGITTTPGVYDSTGLLNL----- 154 (441)
T ss_pred hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCC-cCCCCCCCCccCCCCEEChhHhhcc-----
Confidence 122334488887765431 12233333 3579999999999 57778899964 5667665443311
Q ss_pred CCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHH
Q 011535 148 DGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (483)
Q Consensus 148 ~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~ 227 (483)
. ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+...+.
T Consensus 155 -------~-~~~~~v~ViGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~------- 198 (441)
T PRK08010 155 -------K-ELPGHLGILGGGYIGVEFASMFAN--------------------FG-SKVTILEAASLFLPRED------- 198 (441)
T ss_pred -------c-ccCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCCCCCCcC-------
Confidence 0 135799999999999999999985 33 57999999765432221
Q ss_pred hcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEE
Q 011535 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v 307 (483)
+.....+.+.|. ++||+++++..+.++. . +++. +
T Consensus 199 ---------------------------~~~~~~l~~~l~-------------~~gV~v~~~~~v~~i~--~-~~~~---v 232 (441)
T PRK08010 199 ---------------------------RDIADNIATILR-------------DQGVDIILNAHVERIS--H-HENQ---V 232 (441)
T ss_pred ---------------------------HHHHHHHHHHHH-------------hCCCEEEeCCEEEEEE--E-cCCE---E
Confidence 111112223332 6799999999999987 3 2332 2
Q ss_pred EEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeec
Q 011535 308 HFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCG 387 (483)
Q Consensus 308 ~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~G 387 (483)
.+.. ++ .++++|.|++|+|.+|++. . ...+..|+.++++|++.+|++ ++|++|+|||+|
T Consensus 233 ~v~~----------------~~-g~i~~D~vl~a~G~~pn~~-~-l~~~~~gl~~~~~G~i~vd~~--~~Ts~~~IyA~G 291 (441)
T PRK08010 233 QVHS----------------EH-AQLAVDALLIASGRQPATA-S-LHPENAGIAVNERGAIVVDKY--LHTTADNIWAMG 291 (441)
T ss_pred EEEE----------------cC-CeEEeCEEEEeecCCcCCC-C-cCchhcCcEECCCCcEEECCC--cccCCCCEEEee
Confidence 2211 11 1588999999999999862 1 123566888888899999988 789999999999
Q ss_pred cCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 388 WLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 388 d~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
||+.++.-.. .|..+|+.++.+|+.
T Consensus 292 D~~~~~~~~~-~a~~~~~~~~~~~~g 316 (441)
T PRK08010 292 DVTGGLQFTY-ISLDDYRIVRDELLG 316 (441)
T ss_pred ecCCCccchh-HHHHHHHHHHHHHcC
Confidence 9987666555 799999999999853
No 45
>PLN02546 glutathione reductase
Probab=99.97 E-value=6.8e-30 Score=266.77 Aligned_cols=283 Identities=14% Similarity=0.155 Sum_probs=192.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC---------CCCCC-ceecccCCCCC-------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---------PTPFG-LVRSGVAPDHP------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~---------~~~gg-l~~~g~~p~~~------------------- 69 (483)
.++|+|||+||||+.||..+++.| .+|+|||+. ..+|| ++++|+.|...
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 478999999999999999999999 999999962 22344 34444433210
Q ss_pred --------Ch-------H----HHHHHHHHHHhcCCeEEEeCeEE--c-eEEEecceeeccCEEEEccCCCCCCCCCCCC
Q 011535 70 --------ET-------K----IVINQFSRVVQHERCSFFGNVTL--G-SSVSLSELRQLYHVVVLAYGAESDRALGIPG 127 (483)
Q Consensus 70 --------~~-------~----~~~~~~~~~~~~~~v~~~~~~~v--~-~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg 127 (483)
.. + .+...+.+.++..+++++.+... . ..+.++.....||+||||||+ .+..|++||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs-~p~~P~IpG 235 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGG-RPFIPDIPG 235 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCC-CCCCCCCCC
Confidence 00 1 12234455566778999887443 1 224333334579999999999 577778888
Q ss_pred CCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEE
Q 011535 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (483)
Q Consensus 128 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~ 207 (483)
.+ .++++.++..+ . ..+++|+|||+|.+|+|+|..|.. . ..+|+
T Consensus 236 ~~--~v~~~~~~l~~----------~---~~~k~V~VIGgG~iGvE~A~~L~~--------------------~-g~~Vt 279 (558)
T PLN02546 236 IE--HAIDSDAALDL----------P---SKPEKIAIVGGGYIALEFAGIFNG--------------------L-KSDVH 279 (558)
T ss_pred hh--hccCHHHHHhc----------c---ccCCeEEEECCCHHHHHHHHHHHh--------------------c-CCeEE
Confidence 54 23333322210 0 146899999999999999999875 2 35899
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEee
Q 011535 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (483)
Q Consensus 208 li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~ 287 (483)
++.|.+.+...|. +.....+.+.|. ++||++++
T Consensus 280 lv~~~~~il~~~d----------------------------------~~~~~~l~~~L~-------------~~GV~i~~ 312 (558)
T PLN02546 280 VFIRQKKVLRGFD----------------------------------EEVRDFVAEQMS-------------LRGIEFHT 312 (558)
T ss_pred EEEeccccccccC----------------------------------HHHHHHHHHHHH-------------HCCcEEEe
Confidence 9998865432222 111122223333 67999999
Q ss_pred cCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCe
Q 011535 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (483)
Q Consensus 288 ~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~ 367 (483)
+..+.++. .++++.+ .+. +++++.+.+|.||+++|++|+.. .+ ..+..|+.++++|+
T Consensus 313 ~~~v~~i~--~~~~g~v---~v~----------------~~~g~~~~~D~Viva~G~~Pnt~-~L-~le~~gl~~d~~G~ 369 (558)
T PLN02546 313 EESPQAII--KSADGSL---SLK----------------TNKGTVEGFSHVMFATGRKPNTK-NL-GLEEVGVKMDKNGA 369 (558)
T ss_pred CCEEEEEE--EcCCCEE---EEE----------------ECCeEEEecCEEEEeeccccCCC-cC-ChhhcCCcCCCCCc
Confidence 99999886 3123322 111 11223456899999999999872 11 13567888888999
Q ss_pred eeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 368 v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|.+|++ ++|++|+|||+|||+.++.... .|+.+|..+|.+|..
T Consensus 370 I~VD~~--l~Ts~p~IYAaGDv~~~~~l~~-~A~~~g~~~a~~i~g 412 (558)
T PLN02546 370 IEVDEY--SRTSVPSIWAVGDVTDRINLTP-VALMEGGALAKTLFG 412 (558)
T ss_pred EeECCC--ceeCCCCEEEeeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 999988 7899999999999987665554 799999999999864
No 46
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=7e-30 Score=257.83 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=192.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCC-ceecccCCCCCChHHHHH-HHHHHHhcCCeEEEeCeEEc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFG-LVRSGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~gg-l~~~g~~p~~~~~~~~~~-~~~~~~~~~~v~~~~~~~v~ 96 (483)
++|+|||||+||+++|..|++.+++.+|+||++++. ++. .....+..+....+++.. ...+++++.+++++.+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 689999999999999999999888899999998875 231 111122233334455543 35566677899998876552
Q ss_pred ------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCch
Q 011535 97 ------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (483)
Q Consensus 97 ------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~ 170 (483)
+.+..+.....||+||||||+ .+..+++||.+. +++...+..+.. ....+..+++++|||+|++
T Consensus 83 ~id~~~~~v~~~~~~~~yd~LVlATG~-~~~~p~i~G~~~--v~~~~~~~~~~~-------~~~~~~~~~~vvViGgG~~ 152 (377)
T PRK04965 83 DIDAEAQVVKSQGNQWQYDKLVLATGA-SAFVPPIPGREL--MLTLNSQQEYRA-------AETQLRDAQRVLVVGGGLI 152 (377)
T ss_pred EEECCCCEEEECCeEEeCCEEEECCCC-CCCCCCCCCCce--EEEECCHHHHHH-------HHHHhhcCCeEEEECCCHH
Confidence 124444444579999999999 577778888653 444332221100 0001124689999999999
Q ss_pred HHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHH
Q 011535 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (483)
Q Consensus 171 g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (483)
|+|+|..|.+ . ..+|+++.+.+.+...+..
T Consensus 153 g~e~A~~L~~--------------------~-g~~Vtlv~~~~~~l~~~~~----------------------------- 182 (377)
T PRK04965 153 GTELAMDLCR--------------------A-GKAVTLVDNAASLLASLMP----------------------------- 182 (377)
T ss_pred HHHHHHHHHh--------------------c-CCeEEEEecCCcccchhCC-----------------------------
Confidence 9999999985 2 3579999988654221111
Q ss_pred HhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCce
Q 011535 251 EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEF 330 (483)
Q Consensus 251 ~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~ 330 (483)
+.....+.+.+. +.||+++++..+.++. . +++.+ .+.+. ++
T Consensus 183 ----~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~-~~~~~-~v~~~------------------~g 223 (377)
T PRK04965 183 ----PEVSSRLQHRLT-------------EMGVHLLLKSQLQGLE--K-TDSGI-RATLD------------------SG 223 (377)
T ss_pred ----HHHHHHHHHHHH-------------hCCCEEEECCeEEEEE--c-cCCEE-EEEEc------------------CC
Confidence 111222333333 6689999999999987 3 22221 22221 22
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAEET 407 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g~~~ 407 (483)
++++||+||+|+|++|++ .+....|+..+ +| +.+|++ ++|+.|+|||+|||+..+ .+.+..|+.||+.+
T Consensus 224 ~~i~~D~vI~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~ 295 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNT----ALARRAGLAVN-RG-IVVDSY--LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMAL 295 (377)
T ss_pred cEEECCEEEECcCCCcch----HHHHHCCCCcC-CC-EEECCC--cccCCCCEEEeeecEeECCceeehHHHHHHHHHHH
Confidence 479999999999999976 34456677765 46 788887 779999999999998532 22344588999999
Q ss_pred HHHHHH
Q 011535 408 VASISE 413 (483)
Q Consensus 408 a~~I~~ 413 (483)
|.||..
T Consensus 296 a~n~~g 301 (377)
T PRK04965 296 AKNLLG 301 (377)
T ss_pred HHHhcC
Confidence 988864
No 47
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=2.4e-29 Score=259.82 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=193.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecC--------CCCCC-ceecccCCCCC------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL--------PTPFG-LVRSGVAPDHP------------------ 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~--------~~~gg-l~~~g~~p~~~------------------ 69 (483)
..++|+||||||+|+.||..+++. + .+|+|||+. ..+|| ++++|+.|...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 458999999999999999999997 8 999999974 34565 35555555211
Q ss_pred ----------ChHH-----------HHHHHHHHHhc-CCeEEEeCeEE--c-eEEEecc---------eeeccCEEEEcc
Q 011535 70 ----------ETKI-----------VINQFSRVVQH-ERCSFFGNVTL--G-SSVSLSE---------LRQLYHVVVLAY 115 (483)
Q Consensus 70 ----------~~~~-----------~~~~~~~~~~~-~~v~~~~~~~v--~-~~~~~~~---------~~~~yd~vvlAt 115 (483)
..+. +...+...++. .+++++.+... + ..+.+.. ....||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 1111 11122334544 48988877643 1 1233321 135799999999
Q ss_pred CCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHH
Q 011535 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (483)
Q Consensus 116 G~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~ 195 (483)
|+ .|..+++||.+. +++..++.. +. ..+++++|||+|++|+|+|..+..
T Consensus 160 Gs-~p~~p~i~G~~~--~~~~~~~~~----------~~---~~~~~vvIIGgG~iG~E~A~~~~~--------------- 208 (486)
T TIGR01423 160 GS-WPQMLGIPGIEH--CISSNEAFY----------LD---EPPRRVLTVGGGFISVEFAGIFNA--------------- 208 (486)
T ss_pred CC-CCCCCCCCChhh--eechhhhhc----------cc---cCCCeEEEECCCHHHHHHHHHHHH---------------
Confidence 99 577788888642 333322211 01 145899999999999999987753
Q ss_pred HHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCC
Q 011535 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ 275 (483)
Q Consensus 196 ~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~ 275 (483)
|... ..+|+|+.+.+.+...|. +.+.+.+.+.|.
T Consensus 209 --l~~~-G~~Vtli~~~~~il~~~d----------------------------------~~~~~~l~~~L~--------- 242 (486)
T TIGR01423 209 --YKPR-GGKVTLCYRNNMILRGFD----------------------------------STLRKELTKQLR--------- 242 (486)
T ss_pred --hccC-CCeEEEEecCCccccccC----------------------------------HHHHHHHHHHHH---------
Confidence 1112 358999998876543222 111222233333
Q ss_pred CCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCcc
Q 011535 276 PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFD 355 (483)
Q Consensus 276 ~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~ 355 (483)
++||+++++..+.++. . +++....+.+. ++ .++++|.||+|+|++|+.. .+ ..
T Consensus 243 ----~~GI~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g--~~i~~D~vl~a~G~~Pn~~-~l-~l 295 (486)
T TIGR01423 243 ----ANGINIMTNENPAKVT--L-NADGSKHVTFE----------------SG--KTLDVDVVMMAIGRVPRTQ-TL-QL 295 (486)
T ss_pred ----HcCCEEEcCCEEEEEE--E-cCCceEEEEEc----------------CC--CEEEcCEEEEeeCCCcCcc-cC-Cc
Confidence 6789999999999886 3 12222223221 12 3799999999999999872 11 23
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+..|+.++++|+|.+|++ ++|+.|+|||+|||+.++.... .|++||+.+|+||+.
T Consensus 296 ~~~gl~~~~~G~I~Vd~~--l~Ts~~~IyA~GDv~~~~~l~~-~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 296 DKVGVELTKKGAIQVDEF--SRTNVPNIYAIGDVTDRVMLTP-VAINEGAAFVDTVFG 350 (486)
T ss_pred hhhCceECCCCCEecCCC--CcCCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHhC
Confidence 567888888999999998 6799999999999987665555 799999999999964
No 48
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.97 E-value=4.8e-30 Score=279.15 Aligned_cols=319 Identities=14% Similarity=0.129 Sum_probs=213.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCC-Cce-ecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPF-GLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~g-gl~-~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+++|||||+|+||+.+|..|.++. ++++|+||++.++++ ... .+.... +...+++.....++++..+++++.++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~-~~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFS-HHTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHc-CCCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 468999999999999999998764 458999999998753 211 111112 223445544455667778999998865
Q ss_pred Ec------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 95 v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
+. +.+.+.++. ..||+||||||+ .|..+++||.+..+++..+.+.....-. .....+++++|||+
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~l~-------~~~~~~k~vvVIGg 153 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGS-YPWIPPIKGSETQDCFVYRTIEDLNAIE-------ACARRSKRGAVVGG 153 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHH-------HHHhcCCeEEEECC
Confidence 42 224444443 579999999999 5777889998877776543322111000 00114689999999
Q ss_pred CchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCC
Q 011535 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (483)
Q Consensus 168 G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~ 247 (483)
|.+|+|+|..|.+ .+. +|+++.+.+.+......
T Consensus 154 G~iGlE~A~~L~~--------------------~G~-~VtvVe~~~~ll~~~ld-------------------------- 186 (847)
T PRK14989 154 GLLGLEAAGALKN--------------------LGV-ETHVIEFAPMLMAEQLD-------------------------- 186 (847)
T ss_pred CHHHHHHHHHHHH--------------------cCC-eEEEEeccccchhhhcC--------------------------
Confidence 9999999999986 444 69999887653211100
Q ss_pred cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccC
Q 011535 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (483)
Q Consensus 248 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~ 327 (483)
+.....+.+.|. ++||+++++..+.++. .+.++.+..+.+. +
T Consensus 187 -------~~~~~~l~~~L~-------------~~GV~v~~~~~v~~I~--~~~~~~~~~v~~~----------------d 228 (847)
T PRK14989 187 -------QMGGEQLRRKIE-------------SMGVRVHTSKNTLEIV--QEGVEARKTMRFA----------------D 228 (847)
T ss_pred -------HHHHHHHHHHHH-------------HCCCEEEcCCeEEEEE--ecCCCceEEEEEC----------------C
Confidence 111122223333 6799999999999997 3112333333332 1
Q ss_pred CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHH
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCA 404 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g 404 (483)
| +++++|+||+|+|++|++ .+....|+.++++|.|.||++ ++|+.|+|||+|||+..+ .+.+..+..+|
T Consensus 229 G--~~i~~D~Vv~A~G~rPn~----~L~~~~Gl~~~~~G~I~VD~~--l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a 300 (847)
T PRK14989 229 G--SELEVDFIVFSTGIRPQD----KLATQCGLAVAPRGGIVINDS--CQTSDPDIYAIGECASWNNRVFGLVAPGYKMA 300 (847)
T ss_pred C--CEEEcCEEEECCCcccCc----hHHhhcCccCCCCCcEEECCC--CcCCCCCEEEeecceeEcCcccccHHHHHHHH
Confidence 2 379999999999999987 355677888888999999987 789999999999998643 34455678888
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhh
Q 011535 405 EETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSA 450 (483)
Q Consensus 405 ~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (483)
+.+|.+|+. .+ ..+. .......++..++.+.++++
T Consensus 301 ~vaa~~i~g----~~-~~~~------g~~~~~~lk~~G~~v~s~G~ 335 (847)
T PRK14989 301 QVAVDHLLG----SE-NAFE------GADLSAKLKLLGVDVGGIGD 335 (847)
T ss_pred HHHHHHhcC----CC-cCCC------CcccceEEEECCcceEeccc
Confidence 888888753 21 1121 11223456666777777763
No 49
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=4.5e-29 Score=258.15 Aligned_cols=284 Identities=18% Similarity=0.178 Sum_probs=193.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCC----------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE---------------------------- 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~---------------------------- 70 (483)
+++|+|||+||+|+.+|..+++++ .+|+|||+.+.-|-++++|+.|....
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 368999999999999999999999 99999999864444455666553210
Q ss_pred -hHH-------H----HHHHHHHHhcCCeEEEeCeEEc-------eE--EEecce---eeccCEEEEccCCCCCCCCCCC
Q 011535 71 -TKI-------V----INQFSRVVQHERCSFFGNVTLG-------SS--VSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (483)
Q Consensus 71 -~~~-------~----~~~~~~~~~~~~v~~~~~~~v~-------~~--~~~~~~---~~~yd~vvlAtG~~~~~~~~ip 126 (483)
.+. + ...+.+.++..+++++.+.... .. +...++ ...||+||||||+ .|..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs-~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA-SPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC-CCCCCCCC
Confidence 001 1 1233445566789998875432 12 222333 3469999999999 46555544
Q ss_pred CCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 127 g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
+.+...+++..++.. .. ..+++++|||+|.+|+|+|..|.+ .+ .+|
T Consensus 158 ~~~~~~v~~~~~~~~----------~~---~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g-~~V 203 (466)
T PRK07845 158 EPDGERILTWRQLYD----------LD---ELPEHLIVVGSGVTGAEFASAYTE--------------------LG-VKV 203 (466)
T ss_pred CCCCceEEeehhhhc----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeE
Confidence 444445555443321 00 135799999999999999999875 33 579
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.+.+.+...+.. .....+.+.|. ++||+++
T Consensus 204 tli~~~~~~l~~~d~----------------------------------~~~~~l~~~L~-------------~~gV~i~ 236 (466)
T PRK07845 204 TLVSSRDRVLPGEDA----------------------------------DAAEVLEEVFA-------------RRGMTVL 236 (466)
T ss_pred EEEEcCCcCCCCCCH----------------------------------HHHHHHHHHHH-------------HCCcEEE
Confidence 999988754322221 11112223332 6799999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G 366 (483)
++..+.++. . +++.+. +.+. +| +++++|.||+++|++|+.. .+ ..++.|+.++++|
T Consensus 237 ~~~~v~~v~--~-~~~~~~-v~~~----------------~g--~~l~~D~vl~a~G~~pn~~-~l-~l~~~gl~~~~~G 292 (466)
T PRK07845 237 KRSRAESVE--R-TGDGVV-VTLT----------------DG--RTVEGSHALMAVGSVPNTA-GL-GLEEAGVELTPSG 292 (466)
T ss_pred cCCEEEEEE--E-eCCEEE-EEEC----------------CC--cEEEecEEEEeecCCcCCC-CC-CchhhCceECCCC
Confidence 999888886 3 233221 2211 12 3799999999999999862 11 1356788888899
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++.+|++ ++|+.|+|||+|||+..+.... .|..||..++.+|+.
T Consensus 293 ~i~Vd~~--~~Ts~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 336 (466)
T PRK07845 293 HITVDRV--SRTSVPGIYAAGDCTGVLPLAS-VAAMQGRIAMYHALG 336 (466)
T ss_pred cEeECCC--cccCCCCEEEEeeccCCccchh-HHHHHHHHHHHHHcC
Confidence 9999987 7899999999999987655555 799999999999874
No 50
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=4.8e-29 Score=257.97 Aligned_cols=286 Identities=18% Similarity=0.267 Sum_probs=188.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCCChH-------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETK------------------------- 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~~~~------------------------- 72 (483)
.++|+||||||||++||..+++.| .+|+|||+...+||. ++.|+.|......
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 479999999999999999999999 999999986667775 5566666432110
Q ss_pred --HH-----------HHHHHHHHhcCCeEEEeCeEE--c-e--EEEecce---eeccCEEEEccCCCCCCCCCCCCCCCC
Q 011535 73 --IV-----------INQFSRVVQHERCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLI 131 (483)
Q Consensus 73 --~~-----------~~~~~~~~~~~~v~~~~~~~v--~-~--~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~ 131 (483)
++ ...+...++..+++++.+... + . .+...++ ...||+||||||+ .|. ++||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~--~ipg~~~~ 157 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS-EPT--PLPGVTID 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCC-CCC--CCCCCCCC
Confidence 00 011122334456777655421 1 1 1222232 3579999999999 343 46665433
Q ss_pred C--eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEE
Q 011535 132 G--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (483)
Q Consensus 132 ~--v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li 209 (483)
+ ++++.++.. +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++
T Consensus 158 ~~~~~~~~~~~~----------~~---~~~~~vvIIGgG~ig~E~A~~l~~--------------------~G-~~Vtli 203 (466)
T PRK06115 158 NQRIIDSTGALS----------LP---EVPKHLVVIGAGVIGLELGSVWRR--------------------LG-AQVTVV 203 (466)
T ss_pred CCeEECHHHHhC----------Cc---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEE
Confidence 3 333322211 00 146899999999999999998875 34 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecC
Q 011535 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 210 ~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
.+.+.+...+. +.....+.+.|. +.||+++++.
T Consensus 204 e~~~~il~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~ 236 (466)
T PRK06115 204 EYLDRICPGTD----------------------------------TETAKTLQKALT-------------KQGMKFKLGS 236 (466)
T ss_pred eCCCCCCCCCC----------------------------------HHHHHHHHHHHH-------------hcCCEEEECc
Confidence 98775432221 111122223332 6799999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++.+ .+.+... .+++.+++++|.||+|+|++|+. ..+. .+..++..+++|. .
T Consensus 237 ~V~~i~--~-~~~~v-~v~~~~~-------------~~g~~~~i~~D~vi~a~G~~pn~-~~l~-~~~~g~~~~~~G~-~ 296 (466)
T PRK06115 237 KVTGAT--A-GADGV-SLTLEPA-------------AGGAAETLQADYVLVAIGRRPYT-QGLG-LETVGLETDKRGM-L 296 (466)
T ss_pred EEEEEE--E-cCCeE-EEEEEEc-------------CCCceeEEEeCEEEEccCCcccc-ccCC-cccccceeCCCCE-E
Confidence 999997 3 22222 2222210 12344589999999999999986 2222 2455777777774 5
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++++ ++|+.|+|||+|||+.++.... .|..||+.+|+||+.
T Consensus 297 vd~~--~~Ts~~~IyA~GD~~~~~~la~-~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 297 ANDH--HRTSVPGVWVIGDVTSGPMLAH-KAEDEAVACIERIAG 337 (466)
T ss_pred ECCC--eecCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 6665 7899999999999988776555 799999999999975
No 51
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.97 E-value=6.4e-30 Score=262.62 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=182.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCC-ChHHHHHH-HHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP-ETKIVINQ-FSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~ 94 (483)
++|+|||||+||++||..|++.+++.+|+|||+++.++ ....++ ..+.. ..++.... ...+..+.+++++.+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 58999999999999999999887789999999997643 111111 11111 11222211 23344556899887655
Q ss_pred Ec------eEEEecce------eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 95 LG------SSVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 95 v~------~~~~~~~~------~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
+. +.+.+.+. ...||+||||||+ .++.++++ .+++++...+.... ...++ -.. ..++++
T Consensus 81 V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs-~~~~~~~~---~~~~~~~~~~~~~~-~l~~~---l~~-~~~~~v 151 (438)
T PRK13512 81 VIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA-SANSLGFE---SDITFTLRNLEDTD-AIDQF---IKA-NQVDKA 151 (438)
T ss_pred EEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC-CCCCCCCC---CCCeEEecCHHHHH-HHHHH---Hhh-cCCCEE
Confidence 42 22333321 2369999999999 45554443 33454433221100 00000 000 135899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ .+|+++.+.+.+...+.
T Consensus 152 vViGgG~ig~E~A~~l~~--------------------~g-~~Vtli~~~~~l~~~~d---------------------- 188 (438)
T PRK13512 152 LVVGAGYISLEVLENLYE--------------------RG-LHPTLIHRSDKINKLMD---------------------- 188 (438)
T ss_pred EEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecccccchhcC----------------------
Confidence 999999999999999985 34 47999998875432111
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
+...+.+.+.|. ++||+++++..+.++. . . .+++.
T Consensus 189 ------------~~~~~~l~~~l~-------------~~gI~i~~~~~v~~i~--~---~---~v~~~------------ 223 (438)
T PRK13512 189 ------------ADMNQPILDELD-------------KREIPYRLNEEIDAIN--G---N---EVTFK------------ 223 (438)
T ss_pred ------------HHHHHHHHHHHH-------------hcCCEEEECCeEEEEe--C---C---EEEEC------------
Confidence 111222223332 6799999999988885 2 1 23321
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC-------c-
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------T- 394 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-------~- 394 (483)
++ +++++|.|++|+|++|+. ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+..+ .
T Consensus 224 ----~g--~~~~~D~vl~a~G~~pn~----~~l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~ 291 (438)
T PRK13512 224 ----SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDDKGFIPVNDK--FETNVPNIYAIGDIITSHYRHVDLPAS 291 (438)
T ss_pred ----CC--CEEEeCEEEECcCCCcCh----HHHHhcCcccCCCCcEEECCC--cccCCCCEEEeeeeEEeeeccCCCcee
Confidence 12 368999999999999986 355677888888899999987 779999999999997421 1
Q ss_pred -chhHhhHHHHHHHHHHHHH
Q 011535 395 -GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 -~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|.++|+.+|+||..
T Consensus 292 ~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 292 VPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred cccchHHHHHHHHHHHHhcC
Confidence 1122477888888888853
No 52
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.97 E-value=3.1e-29 Score=267.15 Aligned_cols=319 Identities=20% Similarity=0.204 Sum_probs=220.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC---------------------------C-CCCceecccCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP---------------------------T-PFGLVRSGVAPD 67 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~---------------------------~-~ggl~~~g~~p~ 67 (483)
+.+.++|+|||||||||+||.+|++.| ++|++||+.+ . +||++.||+ |
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p- 455 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T- 455 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-
Confidence 457899999999999999999999999 9999999852 2 789999999 4
Q ss_pred CCChHHHHHHHHHHHhc-CCeEEEeCeEEceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecC
Q 011535 68 HPETKIVINQFSRVVQH-ERCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG 145 (483)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~ 145 (483)
+..+++....+...+.. .+++|+.|+.++.+++.++.. ..||+|+||||++.++.+++||.+.++|+++.+|....+.
T Consensus 456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~ 535 (1028)
T PRK06567 456 VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS 535 (1028)
T ss_pred ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence 44556666555555443 468888899999998888764 4699999999997799999999999999999997765432
Q ss_pred CCCC-CCCCCCCCCCCeEEEEcCCchHHHHHHHHhcC-------------Cc--cccccccchHHHHHHhcCCc------
Q 011535 146 HPDG-KNLSPDLKSTDTAVILGQGNVALDVARILLRP-------------TE--ELATTDIASYAWTALEGSSI------ 203 (483)
Q Consensus 146 ~~~~-~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~-------------~~--~l~~~di~~~~~~~l~~~~~------ 203 (483)
...+ .....++..+++|||||||++|+|+|+..... .. .....+|+...+..+++.+.
T Consensus 536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred cccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccch
Confidence 1111 01112233468999999999999999955430 01 11234566655555544211
Q ss_pred --------cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc---HHHhhccHHHHHHHHHHHHHHHhc
Q 011535 204 --------RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD---EEEMKNSRIQRRVYELLSKAAASA 272 (483)
Q Consensus 204 --------~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~l~~~~~~~ 272 (483)
..|++++|+...+ +|+. .++. .+++
T Consensus 616 v~~l~~~~G~VtIvYRr~~~e----------------------------mpA~~~~~eEv---------~~A~------- 651 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQD----------------------------SPAYKLNHEEL---------IYAL------- 651 (1028)
T ss_pred hhhhhccCCceEEEecCChhh----------------------------CCCCCCCHHHH---------HHHH-------
Confidence 1188888887544 2331 1111 1111
Q ss_pred CCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeee-----eC--CC----CCceeecc-CCceEEEecCeEEE
Q 011535 273 SSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-----KG--GG----PGKQYAVG-TGEFEDLDCGMVLK 340 (483)
Q Consensus 273 ~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l-----~~--~~----~g~~~~~~-~g~~~~i~~D~vi~ 340 (483)
+.||.++++..|.++. .|++|++.++++..... .+ +. .|+..+.+ .++..+|+||.||.
T Consensus 652 -------eEGV~f~~~~~P~~i~--~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~ 722 (1028)
T PRK06567 652 -------ALGVDFKENMQPLRIN--VDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIM 722 (1028)
T ss_pred -------HcCcEEEecCCcEEEE--ecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEE
Confidence 7899999999999998 54579999999987652 11 00 12222222 23446899999999
Q ss_pred eeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 341 SIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 341 a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
|+|..|++. ++. . .+ . .-++.+++|+- .++ .||++|+.++.+|.++|...+
T Consensus 723 A~G~~~~~~----~~~-------~--~~----s--~~~d~~~~f~G--------tvv-~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 723 AIGIENNTQ----FDE-------D--KY----S--YFGDCNPKYSG--------SVV-KALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred ecccCCccc----ccc-------c--cc----c--cccCCCCcccc--------HHH-HHHHHHHhHHHHHHHHHhhCC
Confidence 999999872 210 0 00 0 22445666663 455 899999999999999998763
No 53
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=8.1e-29 Score=256.05 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=190.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC----------------------------Ch
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP----------------------------ET 71 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~----------------------------~~ 71 (483)
++|+||||||||++||..+++.+ .+|+|||+.+..|.++..|+.|... ..
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNG--KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 38999999999999999999999 9999999987555555555555211 11
Q ss_pred HHHH-----------HHHHHHHhcCCeEEEeCeEE---ceE--EEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCe
Q 011535 72 KIVI-----------NQFSRVVQHERCSFFGNVTL---GSS--VSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (483)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~v~~~~~~~v---~~~--~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v 133 (483)
..+. ......++..+++++.+... ... +..++. ...||+||||||+ .|+.+++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs-~p~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGS-EPTELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCC-CCCCCCCCCCCCCeE
Confidence 1111 11223345567888776543 112 222222 3569999999999 466666777655555
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+++.+.... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+
T Consensus 158 ~~~~~~~~~----------~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~ 203 (458)
T PRK06912 158 INSKHAMSL----------P---SIPSSLLIVGGGVIGCEFASIYSR--------------------LG-TKVTIVEMAP 203 (458)
T ss_pred EcchHHhCc----------c---ccCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCC
Confidence 554332211 0 135799999999999999998875 34 4799999886
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +...+.+.+.|. ++||++++++.+.+
T Consensus 204 ~ll~~~d----------------------------------~e~~~~l~~~L~-------------~~GI~i~~~~~V~~ 236 (458)
T PRK06912 204 QLLPGED----------------------------------EDIAHILREKLE-------------NDGVKIFTGAALKG 236 (458)
T ss_pred CcCcccc----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEEE
Confidence 5432111 111222223333 67999999999988
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . ++. .+.+.. +++..++++|.||+|+|.+|+. ..+ ..+..|+..+++| +.+|++
T Consensus 237 i~--~--~~~--~v~~~~---------------~g~~~~i~~D~vivA~G~~p~~-~~l-~l~~~gv~~~~~g-i~Vd~~ 292 (458)
T PRK06912 237 LN--S--YKK--QALFEY---------------EGSIQEVNAEFVLVSVGRKPRV-QQL-NLEKAGVQFSNKG-ISVNEH 292 (458)
T ss_pred EE--E--cCC--EEEEEE---------------CCceEEEEeCEEEEecCCccCC-CCC-CchhcCceecCCC-EEeCCC
Confidence 86 3 222 122221 2333579999999999999975 222 2345677777777 888887
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||..++.... .|+.+|+.+|.+|..
T Consensus 293 --~~ts~~~VyA~GD~~~~~~la~-~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 --MQTNVPHIYACGDVIGGIQLAH-VAFHEGTTAALHASG 329 (458)
T ss_pred --eecCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 7799999999999987666555 799999999999863
No 54
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=6.2e-29 Score=257.58 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=187.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCCh--HHHHHHHH-----------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--KIVINQFS----------------- 79 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~--~~~~~~~~----------------- 79 (483)
.++|+||||||||++||..|++.+ .+|+|||+....|..+..|+.|..... .++...+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 479999999999999999999999 999999997555556667776642211 01111111
Q ss_pred ------------------HHHhcCCeEEEeCeEE---ceEEEe--cce---eeccCEEEEccCCCCCCCCCCCCCCC-CC
Q 011535 80 ------------------RVVQHERCSFFGNVTL---GSSVSL--SEL---RQLYHVVVLAYGAESDRALGIPGEDL-IG 132 (483)
Q Consensus 80 ------------------~~~~~~~v~~~~~~~v---~~~~~~--~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~-~~ 132 (483)
..++..+++++.+... ...+.+ .++ ...||+||||||+. |+. +||.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~-p~~--~pg~~~~~~ 158 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSS-TRL--LPGTSLSEN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCC-CCC--CCCCCCCCc
Confidence 1112234555443211 112222 222 34699999999994 543 355442 23
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
+++..+... .+ ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.
T Consensus 159 v~~~~~~~~------------~~-~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtlv~~~ 204 (466)
T PRK07818 159 VVTYEEQIL------------SR-ELPKSIVIAGAGAIGMEFAYVLKN--------------------YG-VDVTIVEFL 204 (466)
T ss_pred EEchHHHhc------------cc-cCCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecC
Confidence 443322110 00 135799999999999999999885 34 479999987
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+. +.....+.+.|. ++||++++++.+.
T Consensus 205 ~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~v~ 237 (466)
T PRK07818 205 DRALPNED----------------------------------AEVSKEIAKQYK-------------KLGVKILTGTKVE 237 (466)
T ss_pred CCcCCccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEE
Confidence 65432211 111222223333 6799999999999
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . ++....+.+.. .+|+..++++|.||+|+|++|+.. .+ ..+..|+.++++|++.+|+
T Consensus 238 ~i~--~--~~~~~~v~~~~--------------~~g~~~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~g~i~vd~ 297 (466)
T PRK07818 238 SID--D--NGSKVTVTVSK--------------KDGKAQELEADKVLQAIGFAPRVE-GY-GLEKTGVALTDRGAIAIDD 297 (466)
T ss_pred EEE--E--eCCeEEEEEEe--------------cCCCeEEEEeCEEEECcCcccCCC-CC-CchhcCcEECCCCcEeeCC
Confidence 997 3 22222233321 034445899999999999999862 11 1356788888889999998
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+ ++|+.|+|||+|||+.++.... .|+.+|+.+|.+|+.
T Consensus 298 ~--~~Ts~p~IyAiGD~~~~~~l~~-~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 Y--MRTNVPHIYAIGDVTAKLQLAH-VAEAQGVVAAETIAG 335 (466)
T ss_pred C--cccCCCCEEEEeecCCCcccHh-HHHHHHHHHHHHHcC
Confidence 8 7899999999999986655555 799999999999964
No 55
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.2e-28 Score=255.38 Aligned_cols=285 Identities=20% Similarity=0.268 Sum_probs=188.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCC--------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPD--------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~--------------------------~~~ 70 (483)
..++|+||||||||++||..|++.+ .+|+|||+ ..+||.. ..|+.|. ...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 3479999999999999999999999 99999999 5566643 3333331 112
Q ss_pred hHHHHHHHH------------HHHhcCCeEEEeCeEE---ceEEEecceeeccCEEEEccCCCCCCCCCCCCCC---CCC
Q 011535 71 TKIVINQFS------------RVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIG 132 (483)
Q Consensus 71 ~~~~~~~~~------------~~~~~~~v~~~~~~~v---~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~ 132 (483)
.+++..... ..+...+++++.+... ...+.+......||+||||||+. .|.+||.+ ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 223322222 2233446776655332 12233333345799999999994 44667753 223
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
+++..+... +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.
T Consensus 156 ~~~~~~~~~----------~~---~~~k~v~VIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~ 201 (460)
T PRK06292 156 LLTSDDAFE----------LD---KLPKSLAVIGGGVIGLELGQALSR--------------------LG-VKVTVFERG 201 (460)
T ss_pred EECchHHhC----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecC
Confidence 333322211 00 146899999999999999999885 34 469999988
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+. +.....+.+.|. ++ |+++++..+.
T Consensus 202 ~~~l~~~d----------------------------------~~~~~~~~~~l~-------------~~-I~i~~~~~v~ 233 (460)
T PRK06292 202 DRILPLED----------------------------------PEVSKQAQKILS-------------KE-FKIKLGAKVT 233 (460)
T ss_pred CCcCcchh----------------------------------HHHHHHHHHHHh-------------hc-cEEEcCCEEE
Confidence 75432111 111112222232 55 9999999999
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . ++. ..+++.. .+++..++++|.||+|+|++|+.- .+ ..+..|+..+++|++.+|+
T Consensus 234 ~i~--~--~~~-~~v~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~-~l-~l~~~g~~~~~~g~i~vd~ 292 (460)
T PRK06292 234 SVE--K--SGD-EKVEELE--------------KGGKTETIEADYVLVATGRRPNTD-GL-GLENTGIELDERGRPVVDE 292 (460)
T ss_pred EEE--E--cCC-ceEEEEE--------------cCCceEEEEeCEEEEccCCccCCC-CC-CcHhhCCEecCCCcEeECC
Confidence 987 3 222 2233211 124445899999999999999862 11 2356688888899999999
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+ ++|+.|+|||+|||+..+.... .|+.||+.+|.+|...
T Consensus 293 ~--~~ts~~~IyA~GD~~~~~~~~~-~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 293 H--TQTSVPGIYAAGDVNGKPPLLH-EAADEGRIAAENAAGD 331 (460)
T ss_pred C--cccCCCCEEEEEecCCCccchh-HHHHHHHHHHHHhcCC
Confidence 8 7899999999999987665555 7999999999999753
No 56
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=1.4e-28 Score=256.74 Aligned_cols=283 Identities=12% Similarity=0.181 Sum_probs=189.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC-------------------------ChH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-------------------------ETK 72 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~-------------------------~~~ 72 (483)
..++|+||||||||++||..+++.| .+|+|||+...-|..+.+|+.|... ...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 4579999999999999999999999 9999999975334356666655321 001
Q ss_pred H-------H----HHHHHHHHhcCCeEEEeCeEE--c-eEEE--------------------e--------cce-eeccC
Q 011535 73 I-------V----INQFSRVVQHERCSFFGNVTL--G-SSVS--------------------L--------SEL-RQLYH 109 (483)
Q Consensus 73 ~-------~----~~~~~~~~~~~~v~~~~~~~v--~-~~~~--------------------~--------~~~-~~~yd 109 (483)
. + ...+.+.++..+++++.+... + ..+. + +++ ...||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 1 1 122334456678888777642 1 1111 1 222 35799
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccc
Q 011535 110 VVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189 (483)
Q Consensus 110 ~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~d 189 (483)
+||||||+ .|..|++||.+ .++++.++.. +..+++|+|||+|.+|+|+|..|.+
T Consensus 205 ~lVIATGS-~P~~P~IpG~~--~v~ts~~~~~--------------l~~pk~VvIIGgG~iGlE~A~~l~~--------- 258 (561)
T PTZ00058 205 NILIAVGN-KPIFPDVKGKE--FTISSDDFFK--------------IKEAKRIGIAGSGYIAVELINVVNR--------- 258 (561)
T ss_pred EEEEecCC-CCCCCCCCCce--eEEEHHHHhh--------------ccCCCEEEEECCcHHHHHHHHHHHH---------
Confidence 99999999 57778888864 2444433221 1136899999999999999999885
Q ss_pred cchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHH
Q 011535 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAA 269 (483)
Q Consensus 190 i~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~ 269 (483)
.+ .+|+++.+++.+...+. .+ ....+.+.|.
T Consensus 259 -----------~G-~~Vtli~~~~~il~~~d-~~---------------------------------i~~~l~~~L~--- 289 (561)
T PTZ00058 259 -----------LG-AESYIFARGNRLLRKFD-ET---------------------------------IINELENDMK--- 289 (561)
T ss_pred -----------cC-CcEEEEEecccccccCC-HH---------------------------------HHHHHHHHHH---
Confidence 34 57999999875433222 11 1112223332
Q ss_pred HhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC
Q 011535 270 ASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV 349 (483)
Q Consensus 270 ~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~ 349 (483)
++||+++++..+.++. .++++.+. +.+ ++..+++++|.|++|+|++|+.
T Consensus 290 ----------~~GV~i~~~~~V~~I~--~~~~~~v~-v~~-----------------~~~~~~i~aD~VlvA~Gr~Pn~- 338 (561)
T PTZ00058 290 ----------KNNINIITHANVEEIE--KVKEKNLT-IYL-----------------SDGRKYEHFDYVIYCVGRSPNT- 338 (561)
T ss_pred ----------HCCCEEEeCCEEEEEE--ecCCCcEE-EEE-----------------CCCCEEEECCEEEECcCCCCCc-
Confidence 6799999999999987 31122221 111 1222479999999999999986
Q ss_pred CCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC----------------------------------CCcc
Q 011535 350 NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR----------------------------------GPTG 395 (483)
Q Consensus 350 ~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~----------------------------------g~~~ 395 (483)
..+.+ +..++. +++|+|.+|++ ++|+.|+|||+|||+. ++.-
T Consensus 339 ~~L~l-~~~~~~-~~~G~I~VDe~--lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l 414 (561)
T PTZ00058 339 EDLNL-KALNIK-TPKGYIKVDDN--QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQL 414 (561)
T ss_pred cccCc-ccccee-cCCCeEEECcC--CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCc
Confidence 22211 223343 46899999998 7899999999999986 2333
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 011535 396 IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~ 413 (483)
. ..|..+|+.+|.||..
T Consensus 415 a-~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 415 T-PVAINAGRLLADRLFG 431 (561)
T ss_pred h-HHHHHHHHHHHHHHhC
Confidence 3 3799999999999964
No 57
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=7.1e-29 Score=255.31 Aligned_cols=280 Identities=14% Similarity=0.161 Sum_probs=188.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC--------------------------ChHH
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------------------------ETKI 73 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~--------------------------~~~~ 73 (483)
++|+||||||+|.+||..+ .| .+|+|||+...-|.+++.|+.|... ..++
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--AD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CC--CeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence 6899999999999998763 47 9999999976555566677666321 1111
Q ss_pred H-------HHHH-----HHH-HhcCCeEEEeCeEE---ceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 74 V-------INQF-----SRV-VQHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 74 ~-------~~~~-----~~~-~~~~~v~~~~~~~v---~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
+ ...+ ... ++..+++++.+... .+.+.+.++ ...||+||||||+ .|+.|++||.+...+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs-~p~~p~i~g~~~~~~~~~ 156 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS-RPVIPPVIADSGVRYHTS 156 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC-CCCCCCCCCcCCccEEch
Confidence 1 1111 112 44567787776554 233555443 3579999999999 577788888654444443
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 157 ~~~~~l----------~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~~Vtli~~~~~ll 202 (451)
T PRK07846 157 DTIMRL----------P---ELPESLVIVGGGFIAAEFAHVFSA--------------------LG-VRVTVVNRSGRLL 202 (451)
T ss_pred HHHhhh----------h---hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCccc
Confidence 332210 0 135799999999999999999985 34 5799999987543
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..+. ++ ..+.+.+.+ +.+|+++++..+.++.
T Consensus 203 ~~~d-~~---------------------------------~~~~l~~l~--------------~~~v~i~~~~~v~~i~- 233 (451)
T PRK07846 203 RHLD-DD---------------------------------ISERFTELA--------------SKRWDVRLGRNVVGVS- 233 (451)
T ss_pred cccC-HH---------------------------------HHHHHHHHH--------------hcCeEEEeCCEEEEEE-
Confidence 2211 11 111111111 4469999999888886
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~ 376 (483)
. +++.+ .+.+ .++.+++||.||+|+|++|+. ..+. .+..++.++++|++.+|++ +
T Consensus 234 -~-~~~~v-~v~~------------------~~g~~i~~D~vl~a~G~~pn~-~~l~-~~~~gl~~~~~G~i~Vd~~--~ 288 (451)
T PRK07846 234 -Q-DGSGV-TLRL------------------DDGSTVEADVLLVATGRVPNG-DLLD-AAAAGVDVDEDGRVVVDEY--Q 288 (451)
T ss_pred -E-cCCEE-EEEE------------------CCCcEeecCEEEEEECCccCc-cccC-chhcCceECCCCcEeECCC--c
Confidence 3 22222 1221 112379999999999999986 1111 2456888888999999998 7
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++|+|||+|||+..+.-.. .|.+||+.+|+||+.
T Consensus 289 ~Ts~p~IyA~GD~~~~~~l~~-~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 289 RTSAEGVFALGDVSSPYQLKH-VANHEARVVQHNLLH 324 (451)
T ss_pred ccCCCCEEEEeecCCCccChh-HHHHHHHHHHHHHcC
Confidence 799999999999987554444 799999999999974
No 58
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.7e-29 Score=275.28 Aligned_cols=316 Identities=19% Similarity=0.197 Sum_probs=212.6
Q ss_pred EEEECccHHHHHHHHHHHhcC-CCCeEEEEecCCCCC-Cc-eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--
Q 011535 22 VCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPF-GL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~-~~~~v~lie~~~~~g-gl-~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-- 96 (483)
|||||+|+||+++|..|.+.. ++++|+||++.++++ .. ..+.+..+....+++.....++++..+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999998876 568999999998853 21 1112334444555665555667777899999986552
Q ss_pred ----eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchH
Q 011535 97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 97 ----~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g 171 (483)
+.+.+.++ ...||+||||||+ .++.+++||.+.++++..+.+..... . ......+++++|||+|.+|
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~-i------~~~~~~~k~vvVVGgG~~G 152 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGS-YPFILPIPGADKKGVYVFRTIEDLDA-I------MAMAQRFKKAAVIGGGLLG 152 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCC-CcCCCCCCCCCCCCEEEeCCHHHHHH-H------HHHhhcCCeEEEECCCHHH
Confidence 23444444 3579999999999 57888899988888876543321100 0 0001246899999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|..|.+ .+ .+|+++.+.+.+......
T Consensus 153 lE~A~~L~~--------------------~G-~~Vtvv~~~~~ll~~~ld------------------------------ 181 (785)
T TIGR02374 153 LEAAVGLQN--------------------LG-MDVSVIHHAPGLMAKQLD------------------------------ 181 (785)
T ss_pred HHHHHHHHh--------------------cC-CeEEEEccCCchhhhhcC------------------------------
Confidence 999999985 34 479999887653211000
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceE
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~ 331 (483)
+.....+.+.+. +.||+++++..+.++. + ++.+..+++.+ | +
T Consensus 182 ---~~~~~~l~~~l~-------------~~GV~v~~~~~v~~i~--~--~~~~~~v~~~d----------------G--~ 223 (785)
T TIGR02374 182 ---QTAGRLLQRELE-------------QKGLTFLLEKDTVEIV--G--ATKADRIRFKD----------------G--S 223 (785)
T ss_pred ---HHHHHHHHHHHH-------------HcCCEEEeCCceEEEE--c--CCceEEEEECC----------------C--C
Confidence 111112222332 6799999999999997 4 45555554432 2 3
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAEETV 408 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g~~~a 408 (483)
++++|+||+++|++|++ .+....|+..+ |.+.+|++ ++|+.|+|||+|||+..+ .+.+..+..||+.+|
T Consensus 224 ~i~~D~Vi~a~G~~Pn~----~la~~~gl~~~--ggI~Vd~~--~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA 295 (785)
T TIGR02374 224 SLEADLIVMAAGIRPND----ELAVSAGIKVN--RGIIVNDS--MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLA 295 (785)
T ss_pred EEEcCEEEECCCCCcCc----HHHHhcCCccC--CCEEECCC--cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHH
Confidence 79999999999999987 35556677665 55788887 789999999999998633 345556888999999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHH
Q 011535 409 ASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWE 452 (483)
Q Consensus 409 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~ 452 (483)
.||.. .+...+.. ......++..++.+++.++..
T Consensus 296 ~ni~g----~~~~~~~~------~~~~~~lk~~g~~v~s~G~~~ 329 (785)
T TIGR02374 296 DHICG----VECEEYEG------SDLSAKLKLLGVDVWSAGDAQ 329 (785)
T ss_pred HHhcC----CCCcCCCC------CccceEEEECCcceEecccCC
Confidence 88863 22122210 112345566667777766543
No 59
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=1.7e-28 Score=260.53 Aligned_cols=281 Identities=19% Similarity=0.262 Sum_probs=188.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCC-------------------------C--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDH-------------------------P-- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~-------------------------~-- 69 (483)
..++|+||||||||++||..|++.| .+|+|||+. .+||. ++.|+.|.. +
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 4589999999999999999999999 999999997 55653 233333311 1
Q ss_pred ChHHHHHH------------HHHHHhcC-CeEEEeCeEEce-----EEEecce---eeccCEEEEccCCCCCCCCCCCCC
Q 011535 70 ETKIVINQ------------FSRVVQHE-RCSFFGNVTLGS-----SVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 70 ~~~~~~~~------------~~~~~~~~-~v~~~~~~~v~~-----~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
..+.+... +...+... +++++.+...-. .+...++ ...||+||||||+ .|..|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGA-SPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCC
Confidence 11222111 11223333 688877644311 2333333 3579999999999 5777788886
Q ss_pred CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEE
Q 011535 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (483)
Q Consensus 129 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~l 208 (483)
+...+++..+.. ... ..+++++|||+|++|+|+|..|.+ .+ .+|++
T Consensus 253 ~~~~~~~~~~~~------------~~~-~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtl 298 (561)
T PRK13748 253 KETPYWTSTEAL------------VSD-TIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTI 298 (561)
T ss_pred CccceEccHHHh------------hcc-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 532222222111 001 145899999999999999999985 34 57999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeec
Q 011535 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (483)
Q Consensus 209 i~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 288 (483)
+.|.. ....+. +...+.+.+.|. +.||+++++
T Consensus 299 i~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gI~i~~~ 330 (561)
T PRK13748 299 LARST-LFFRED----------------------------------PAIGEAVTAAFR-------------AEGIEVLEH 330 (561)
T ss_pred EecCc-cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEcC
Confidence 98853 211111 111222223333 679999999
Q ss_pred CCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCee
Q 011535 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (483)
Q Consensus 289 ~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v 368 (483)
..+.++. . +++. +.+.. .+ .++++|.||+|+|++|+.. .+ ..+..|+..+++|+|
T Consensus 331 ~~v~~i~--~-~~~~---~~v~~---------------~~--~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~g~i 385 (561)
T PRK13748 331 TQASQVA--H-VDGE---FVLTT---------------GH--GELRADKLLVATGRAPNTR-SL-ALDAAGVTVNAQGAI 385 (561)
T ss_pred CEEEEEE--e-cCCE---EEEEe---------------cC--CeEEeCEEEEccCCCcCCC-Cc-CchhcCceECCCCCE
Confidence 9888886 3 2332 21111 11 1599999999999999872 11 235678888889999
Q ss_pred eecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 369 ~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
.+|++ ++|+.|+|||+|||+..+.... .|+.+|+.+|.+|+
T Consensus 386 ~vd~~--~~Ts~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~ 426 (561)
T PRK13748 386 VIDQG--MRTSVPHIYAAGDCTDQPQFVY-VAAAAGTRAAINMT 426 (561)
T ss_pred eECCC--cccCCCCEEEeeecCCCccchh-HHHHHHHHHHHHHc
Confidence 99998 7899999999999987776665 79999999999996
No 60
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.2e-28 Score=253.82 Aligned_cols=284 Identities=19% Similarity=0.219 Sum_probs=185.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCC--------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------E 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~--------------------------~ 70 (483)
..++|+||||||||++||..|++.| .+|+|||+. .+||. ..+|+.|.+. .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 3589999999999999999999999 999999996 45553 4555555321 1
Q ss_pred hHH-------HHH----HHHHHHhcCCeEEEeCeEEc------------eEEEecce---eeccCEEEEccCCCCCCCCC
Q 011535 71 TKI-------VIN----QFSRVVQHERCSFFGNVTLG------------SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 71 ~~~-------~~~----~~~~~~~~~~v~~~~~~~v~------------~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ 124 (483)
... +.. ....++++.+++++.+.... ..+...++ ...||+||||||+ .|..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs-~p~~~- 157 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS-RPVEL- 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-CCCCC-
Confidence 111 111 22344566789988886431 12333333 3469999999999 45433
Q ss_pred CCCCC--CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 125 IPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 125 ipg~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|+.. ...++++.+... +. ..+++++|||+|++|+|+|..|.+ .+
T Consensus 158 -p~~~~~~~~~~~~~~~~~----------~~---~~~~~vvIIGgG~~G~E~A~~l~~--------------------~g 203 (472)
T PRK05976 158 -PGLPFDGEYVISSDEALS----------LE---TLPKSLVIVGGGVIGLEWASMLAD--------------------FG 203 (472)
T ss_pred -CCCCCCCceEEcchHhhC----------cc---ccCCEEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 3332 222333332221 00 135899999999999999999985 34
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|.+.+...+. +.+...+.+.|. ++|
T Consensus 204 -~~Vtli~~~~~il~~~~----------------------------------~~~~~~l~~~l~-------------~~g 235 (472)
T PRK05976 204 -VEVTVVEAADRILPTED----------------------------------AELSKEVARLLK-------------KLG 235 (472)
T ss_pred -CeEEEEEecCccCCcCC----------------------------------HHHHHHHHHHHH-------------hcC
Confidence 57999998875432111 111122223332 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~ 362 (483)
|++++++.+.++. .+.++.+..+.. .+|+.+++++|.||+|+|.+|+. ..+. .+..++..
T Consensus 236 I~i~~~~~v~~i~--~~~~~~~~~~~~----------------~~g~~~~i~~D~vi~a~G~~p~~-~~l~-l~~~~~~~ 295 (472)
T PRK05976 236 VRVVTGAKVLGLT--LKKDGGVLIVAE----------------HNGEEKTLEADKVLVSVGRRPNT-EGIG-LENTDIDV 295 (472)
T ss_pred CEEEeCcEEEEEE--EecCCCEEEEEE----------------eCCceEEEEeCEEEEeeCCccCC-CCCC-chhcCcee
Confidence 9999999888886 201232221111 13444579999999999999976 2221 13345544
Q ss_pred CCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 363 ~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
++|.+.++++ ++|+.|+|||+|||+.++.... .|+.+|..+|.+|.
T Consensus 296 -~~g~i~Vd~~--l~ts~~~IyAiGD~~~~~~~~~-~A~~~g~~aa~~i~ 341 (472)
T PRK05976 296 -EGGFIQIDDF--CQTKERHIYAIGDVIGEPQLAH-VAMAEGEMAAEHIA 341 (472)
T ss_pred -cCCEEEECCC--cccCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHc
Confidence 4689999988 7799999999999987666555 79999999999985
No 61
>PRK14694 putative mercuric reductase; Provisional
Probab=99.97 E-value=3.5e-28 Score=251.97 Aligned_cols=282 Identities=17% Similarity=0.246 Sum_probs=186.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCC-------------------------C
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDH-------------------------P 69 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~-------------------------~ 69 (483)
....++|+||||||||++||..|++.+ .+|+|||+.. +|| +...|+.|.+ +
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERG--ARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 346789999999999999999999999 9999999874 454 2333333321 1
Q ss_pred --ChHHHHH-------HH-----HHHHhc-CCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCC
Q 011535 70 --ETKIVIN-------QF-----SRVVQH-ERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (483)
Q Consensus 70 --~~~~~~~-------~~-----~~~~~~-~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ip 126 (483)
....+.. .+ ...++. .+++++.+.... ..+++.++ ...||+||||||+ .|+.+++|
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs-~p~~p~i~ 158 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA-RPAEPPVP 158 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC-CCCCCCCC
Confidence 1112211 11 122322 378887775442 23444443 3579999999999 67888899
Q ss_pred CCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 127 g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
|.+...+++..+.. .+ +. .+++++|||+|++|+|+|..|.+ .+ .+|
T Consensus 159 G~~~~~~~~~~~~~----------~l--~~-~~~~vvViG~G~~G~E~A~~l~~--------------------~g-~~V 204 (468)
T PRK14694 159 GLAETPYLTSTSAL----------EL--DH-IPERLLVIGASVVALELAQAFAR--------------------LG-SRV 204 (468)
T ss_pred CCCCCceEcchhhh----------ch--hc-CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeE
Confidence 87543333322111 01 11 35799999999999999999885 34 579
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.+.. ....+. +.....+.+.|. ++||+++
T Consensus 205 tlv~~~~-~l~~~~----------------------------------~~~~~~l~~~l~-------------~~GI~v~ 236 (468)
T PRK14694 205 TVLARSR-VLSQED----------------------------------PAVGEAIEAAFR-------------REGIEVL 236 (468)
T ss_pred EEEECCC-CCCCCC----------------------------------HHHHHHHHHHHH-------------hCCCEEE
Confidence 9997642 211111 111222223333 6799999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G 366 (483)
++..+.++. . ++.. +.+.. .+ .++++|.||+|+|.+|+.. .+ ..+..++.. ++|
T Consensus 237 ~~~~v~~i~--~--~~~~--~~v~~---------------~~--~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~-~~G 290 (468)
T PRK14694 237 KQTQASEVD--Y--NGRE--FILET---------------NA--GTLRAEQLLVATGRTPNTE-NL-NLESIGVET-ERG 290 (468)
T ss_pred eCCEEEEEE--E--cCCE--EEEEE---------------CC--CEEEeCEEEEccCCCCCcC-CC-CchhcCccc-CCC
Confidence 999888886 3 2221 11111 11 1699999999999999872 11 124456765 579
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
++.+|++ ++|++|+|||+|||+..+..+. .|+.+|+.+|.+|+
T Consensus 291 ~i~vd~~--~~Ts~~~IyA~GD~~~~~~~~~-~A~~~G~~aa~~i~ 333 (468)
T PRK14694 291 AIRIDEH--LQTTVSGIYAAGDCTDQPQFVY-VAAAGGSRAAINMT 333 (468)
T ss_pred eEeeCCC--cccCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHhc
Confidence 9999988 7899999999999987776665 79999999999986
No 62
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.4e-28 Score=253.57 Aligned_cols=288 Identities=17% Similarity=0.224 Sum_probs=188.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec------CCCCCCc-eecccCCCCC----------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR------LPTPFGL-VRSGVAPDHP---------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~------~~~~ggl-~~~g~~p~~~---------------------- 69 (483)
.++|+||||||||++||.++++.+ .+|+|||+ ...+||. ..+++.|.+.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 579999999999999999999999 99999998 2344442 3333333210
Q ss_pred -----ChHH-------H----HHHHHHHHhcCCeEEEeCeEE-------ceEEEecc--e-eeccCEEEEccCCCCCCCC
Q 011535 70 -----ETKI-------V----INQFSRVVQHERCSFFGNVTL-------GSSVSLSE--L-RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 70 -----~~~~-------~----~~~~~~~~~~~~v~~~~~~~v-------~~~~~~~~--~-~~~yd~vvlAtG~~~~~~~ 123 (483)
.... + ...+..+++..+++++.+... ...+.+.. . ...||+||||||+ .|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs-~p~~~ 160 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS-EPRHL 160 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC-CCCCC
Confidence 0011 1 112334455567888766542 12233321 1 3579999999999 45433
Q ss_pred CCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc
Q 011535 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (483)
Q Consensus 124 ~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~ 203 (483)
+..+.+...++++.....+ . ..+++|+|||+|++|+|+|..|.+ .+
T Consensus 161 p~~~~~~~~~~~~~~~~~~------------~-~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g- 206 (475)
T PRK06327 161 PGVPFDNKIILDNTGALNF------------T-EVPKKLAVIGAGVIGLELGSVWRR--------------------LG- 206 (475)
T ss_pred CCCCCCCceEECcHHHhcc------------c-ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-
Confidence 2222222334333222110 0 145899999999999999998875 33
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceE
Q 011535 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (483)
Q Consensus 204 ~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i 283 (483)
.+|+++.|++.+...+. ++ +...+.+.|. ++||
T Consensus 207 ~~Vtli~~~~~~l~~~d-~~---------------------------------~~~~~~~~l~-------------~~gi 239 (475)
T PRK06327 207 AEVTILEALPAFLAAAD-EQ---------------------------------VAKEAAKAFT-------------KQGL 239 (475)
T ss_pred CeEEEEeCCCccCCcCC-HH---------------------------------HHHHHHHHHH-------------HcCc
Confidence 57999998875432111 11 1112223332 6789
Q ss_pred EEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccC
Q 011535 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN 363 (483)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~ 363 (483)
++++++.+.++. . +++.+ .+.+.+ .+++..++++|.||+|+|++|+. ..+ ..+..++..+
T Consensus 240 ~i~~~~~v~~i~--~-~~~~v-~v~~~~--------------~~g~~~~i~~D~vl~a~G~~p~~-~~l-~~~~~g~~~~ 299 (475)
T PRK06327 240 DIHLGVKIGEIK--T-GGKGV-SVAYTD--------------ADGEAQTLEVDKLIVSIGRVPNT-DGL-GLEAVGLKLD 299 (475)
T ss_pred EEEeCcEEEEEE--E-cCCEE-EEEEEe--------------CCCceeEEEcCEEEEccCCccCC-CCC-CcHhhCceeC
Confidence 999999999997 3 23322 233322 02343579999999999999986 211 2355678888
Q ss_pred CCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 364 IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 364 ~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|++.+|++ ++|+.|+|||+|||+.++.... .|..||..+|.+|..
T Consensus 300 ~~G~i~vd~~--~~Ts~~~VyA~GD~~~~~~~~~-~A~~~G~~aa~~i~g 346 (475)
T PRK06327 300 ERGFIPVDDH--CRTNVPNVYAIGDVVRGPMLAH-KAEEEGVAVAERIAG 346 (475)
T ss_pred CCCeEeECCC--CccCCCCEEEEEeccCCcchHH-HHHHHHHHHHHHHcC
Confidence 8999999987 7899999999999987776655 799999999999964
No 63
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=2.6e-28 Score=253.15 Aligned_cols=285 Identities=18% Similarity=0.240 Sum_probs=190.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCCCh--------------------------H
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET--------------------------K 72 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~~~--------------------------~ 72 (483)
++|+||||||||++||..|++.+ .+|+|||+ +.+||. ..+|+.|..... .
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 68999999999999999999999 99999999 666664 445554431100 0
Q ss_pred HH-----------HHHHHHHHhcCCeEEEeCeEEc---eEE--Eecc--eeeccCEEEEccCCCCCCCCCCC-CCCCCCe
Q 011535 73 IV-----------INQFSRVVQHERCSFFGNVTLG---SSV--SLSE--LRQLYHVVVLAYGAESDRALGIP-GEDLIGV 133 (483)
Q Consensus 73 ~~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~--~~~~--~~~~yd~vvlAtG~~~~~~~~ip-g~~~~~v 133 (483)
.+ ...+...++..+++++.+.... ..+ ...+ ....||+||||||+ .|+.+++| +.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~-~p~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGS-RPRSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCC-CCCCCCCCCCCCCceE
Confidence 00 0111233445677877765532 112 2222 23569999999998 56666665 3322224
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+++.+... + + ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|.+
T Consensus 158 ~~~~~~~~----------~--~-~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~ 203 (461)
T TIGR01350 158 ITSTGALN----------L--K-EVPESLVIIGGGVIGIEFASIFAS--------------------LG-SKVTVIEMLD 203 (461)
T ss_pred EcchHHhc----------c--c-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCC
Confidence 43332221 0 0 135799999999999999999885 34 4799999887
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +.....+.+.+. +.||++++++.+.+
T Consensus 204 ~~l~~~~----------------------------------~~~~~~~~~~l~-------------~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 204 RILPGED----------------------------------AEVSKVVAKALK-------------KKGVKILTNTKVTA 236 (461)
T ss_pred CCCCCCC----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCCEEEE
Confidence 5422111 111122223332 66899999999998
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . +++.+. ++.. .+...++++|.||+|+|++|+. .++ +.+..++..+++|++.+|++
T Consensus 237 i~--~-~~~~v~-v~~~----------------~g~~~~i~~D~vi~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~~ 294 (461)
T TIGR01350 237 VE--K-NDDQVV-YENK----------------GGETETLTGEKVLVAVGRKPNT-EGL-GLENLGVELDERGRIVVDEY 294 (461)
T ss_pred EE--E-eCCEEE-EEEe----------------CCcEEEEEeCEEEEecCCcccC-CCC-CcHhhCceECCCCcEeeCCC
Confidence 86 3 233332 2211 2333479999999999999976 221 34567888888999999987
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++|+.|+|||+|||+.++.... .|+.+|+.+|.+|...
T Consensus 295 --l~t~~~~IyaiGD~~~~~~~~~-~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 295 --MRTNVPGIYAIGDVIGGPMLAH-VASHEGIVAAENIAGK 332 (461)
T ss_pred --cccCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHcCC
Confidence 7789999999999987666555 7999999999999753
No 64
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=4.4e-29 Score=253.45 Aligned_cols=289 Identities=14% Similarity=0.172 Sum_probs=186.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCc--eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGL--VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl--~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..++|+|||||+||++||..|++.+++.+|+||++.+.+ |.. +...+.... ........-.+++...+++++.++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~g~~ 80 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLED-SPQLQQVLPANWWQENNVHLHSGVT 80 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCC-CccccccCCHHHHHHCCCEEEcCCE
Confidence 356899999999999999999999877899999988654 211 100010000 0000000112334556899998865
Q ss_pred E-c-----eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 95 L-G-----SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 95 v-~-----~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
+ . +.+.+.++. ..||+||||||+ .++.+++++...+++++.+.+.... .+...+..+++++|||+
T Consensus 81 V~~id~~~~~v~~~~g~~~~yd~LViATGs-~~~~~p~~~~~~~~v~~~~~~~da~-------~l~~~~~~~~~vvViGg 152 (396)
T PRK09754 81 IKTLGRDTRELVLTNGESWHWDQLFIATGA-AARPLPLLDALGERCFTLRHAGDAA-------RLREVLQPERSVVIVGA 152 (396)
T ss_pred EEEEECCCCEEEECCCCEEEcCEEEEccCC-CCCCCCCCCcCCCCEEecCCHHHHH-------HHHHHhhcCCeEEEECC
Confidence 4 2 234444443 579999999999 4666666666666676543322110 00011225689999999
Q ss_pred CchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCC
Q 011535 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (483)
Q Consensus 168 G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~ 247 (483)
|.+|+|+|..|.+ .+ .+|+++.+.+.+......
T Consensus 153 G~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~-------------------------- 185 (396)
T PRK09754 153 GTIGLELAASATQ--------------------RR-CKVTVIELAATVMGRNAP-------------------------- 185 (396)
T ss_pred CHHHHHHHHHHHH--------------------cC-CeEEEEecCCcchhhhcC--------------------------
Confidence 9999999999985 34 479999988654221111
Q ss_pred cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccC
Q 011535 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (483)
Q Consensus 248 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~ 327 (483)
+.....+.+.+. ++||+++++..+.++. . ++.+ .+.+. +
T Consensus 186 -------~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~~~-~v~l~----------------~ 224 (396)
T PRK09754 186 -------PPVQRYLLQRHQ-------------QAGVRILLNNAIEHVV--D--GEKV-ELTLQ----------------S 224 (396)
T ss_pred -------HHHHHHHHHHHH-------------HCCCEEEeCCeeEEEE--c--CCEE-EEEEC----------------C
Confidence 111122223332 6799999999998886 2 2222 12221 2
Q ss_pred CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--cc------hhHh
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--TG------IIAT 399 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~--~~------~~~~ 399 (483)
| ++++||+||+++|++|++ .|....|+..+ +.+.+|++ ++|+.|+|||+|||+..+ .+ ....
T Consensus 225 g--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~--~gi~vd~~--~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~ 294 (396)
T PRK09754 225 G--ETLQADVVIYGIGISAND----QLAREANLDTA--NGIVIDEA--CRTCDPAIFAGGDVAITRLDNGALHRCESWEN 294 (396)
T ss_pred C--CEEECCEEEECCCCChhh----HHHHhcCCCcC--CCEEECCC--CccCCCCEEEccceEeeeCCCCCEEEECcHHH
Confidence 2 379999999999999986 34455666553 45889987 779999999999998422 22 1236
Q ss_pred hHHHHHHHHHHHHH
Q 011535 400 NLYCAEETVASISE 413 (483)
Q Consensus 400 a~~~g~~~a~~I~~ 413 (483)
|..||+.+|.||+.
T Consensus 295 A~~qg~~aa~ni~g 308 (396)
T PRK09754 295 ANNQAQIAAAAMLG 308 (396)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
No 65
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.96 E-value=7.5e-28 Score=249.30 Aligned_cols=286 Identities=15% Similarity=0.173 Sum_probs=188.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCCc-eecccCCCCC--------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHP-------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~ggl-~~~g~~p~~~-------------------- 69 (483)
.++|+|||+||||+++|..+++.+ .+|+|||+.. ..||. ++.|+.|...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 469999999999999999999999 9999999741 24553 4555555211
Q ss_pred -------ChHH-------H----HHHHHHHHhcCCeEEEeCeEE--c-eEEEec--ce---eeccCEEEEccCCCCCCCC
Q 011535 70 -------ETKI-------V----INQFSRVVQHERCSFFGNVTL--G-SSVSLS--EL---RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 70 -------~~~~-------~----~~~~~~~~~~~~v~~~~~~~v--~-~~~~~~--~~---~~~yd~vvlAtG~~~~~~~ 123 (483)
.... + ...+...++..+++++.+... + ..+.+. ++ ...||+||||||+ .|+.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGE-RPRYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCC-CCCCC
Confidence 0110 1 112334456678888776543 1 123322 21 3479999999999 57778
Q ss_pred CCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc
Q 011535 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (483)
Q Consensus 124 ~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~ 203 (483)
++||.+. ..+++.++... . ...++++|||+|++|+|+|..|.+ .+
T Consensus 159 ~ipG~~~-~~~~~~~~~~~----------~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G- 203 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFSL----------P---YCPGKTLVVGASYVALECAGFLAG--------------------IG- 203 (484)
T ss_pred CCCCccc-eeecHHHhhcc----------c---ccCCCEEEECCCHHHHHHHHHHHH--------------------hC-
Confidence 8888642 12333322210 0 134689999999999999999985 34
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceE
Q 011535 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (483)
Q Consensus 204 ~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i 283 (483)
.+|+++.|. .+...|. + .+...+.+.|. ++||
T Consensus 204 ~~Vtli~~~-~~l~~~d-~---------------------------------~~~~~l~~~L~-------------~~gV 235 (484)
T TIGR01438 204 LDVTVMVRS-ILLRGFD-Q---------------------------------DCANKVGEHME-------------EHGV 235 (484)
T ss_pred CcEEEEEec-ccccccC-H---------------------------------HHHHHHHHHHH-------------HcCC
Confidence 479999874 3222121 1 11122223333 6799
Q ss_pred EEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccC
Q 011535 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN 363 (483)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~ 363 (483)
+++++..+.++. . .++.+ .+++.+ .+..+++++|.||+|+|++|++ ..+ ..+..|+..+
T Consensus 236 ~i~~~~~v~~v~--~-~~~~~-~v~~~~---------------~~~~~~i~~D~vl~a~G~~pn~-~~l-~l~~~gv~~~ 294 (484)
T TIGR01438 236 KFKRQFVPIKVE--Q-IEAKV-KVTFTD---------------STNGIEEEYDTVLLAIGRDACT-RKL-NLENVGVKIN 294 (484)
T ss_pred EEEeCceEEEEE--E-cCCeE-EEEEec---------------CCcceEEEeCEEEEEecCCcCC-CcC-Ccccccceec
Confidence 999999888886 3 23322 233321 1112479999999999999987 211 1356788877
Q ss_pred C-CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 364 I-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 364 ~-~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+ +|+|.+|+. ++|+.|+|||+|||+.+.......|+.+|+.+|.+|..
T Consensus 295 ~~~G~I~Vd~~--~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 295 KKTGKIPADEE--EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcCCeEecCCC--cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 5 599999987 78999999999999864333344799999999999974
No 66
>PRK14727 putative mercuric reductase; Provisional
Probab=99.96 E-value=1.2e-27 Score=248.31 Aligned_cols=283 Identities=16% Similarity=0.226 Sum_probs=187.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCCC------------------------CC--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH------------------------PE-- 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~~------------------------~~-- 70 (483)
.+++|+|||+||||+++|..|++.+ .+|+|||+.+.+||.+ ..|+.|.. +.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 5689999999999999999999999 9999999986677643 33333311 11
Q ss_pred hHHH-------HHH-----HHHHHhcC-CeEEEeCeEE--c-e--EEEecce---eeccCEEEEccCCCCCCCCCCCCCC
Q 011535 71 TKIV-------INQ-----FSRVVQHE-RCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (483)
Q Consensus 71 ~~~~-------~~~-----~~~~~~~~-~v~~~~~~~v--~-~--~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~ 129 (483)
...+ ... +...++.. +++++.+... + . .+...++ ...||+||||||+ .|+.|++||.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~p~i~G~~ 171 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS-TPTIPPIPGLM 171 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC-CCCCCCCCCcC
Confidence 1111 111 22223322 6777665432 1 1 2333333 3469999999999 67888899865
Q ss_pred CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEE
Q 011535 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (483)
Q Consensus 130 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li 209 (483)
...+++..+.. . .. ..+++++|||+|++|+|+|..|.+ .+ .+|+++
T Consensus 172 ~~~~~~~~~~l---~---------~~-~~~k~vvVIGgG~iG~E~A~~l~~--------------------~G-~~Vtlv 217 (479)
T PRK14727 172 DTPYWTSTEAL---F---------SD-ELPASLTVIGSSVVAAEIAQAYAR--------------------LG-SRVTIL 217 (479)
T ss_pred ccceecchHHh---c---------cc-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEE
Confidence 33233222111 0 00 135899999999999999999875 34 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecC
Q 011535 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 210 ~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
.|.. +...+. +.....+.+.|. +.||+++++.
T Consensus 218 ~~~~-~l~~~d----------------------------------~~~~~~l~~~L~-------------~~GV~i~~~~ 249 (479)
T PRK14727 218 ARST-LLFRED----------------------------------PLLGETLTACFE-------------KEGIEVLNNT 249 (479)
T ss_pred EcCC-CCCcch----------------------------------HHHHHHHHHHHH-------------hCCCEEEcCc
Confidence 8753 221111 111112223332 6789999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++ .+.+.. .+ .++++|.||+|+|++|++. .+ ..+..|+..+++|++.
T Consensus 250 ~V~~i~--~-~~~---~~~v~~----------------~~-g~i~aD~VlvA~G~~pn~~-~l-~l~~~g~~~~~~G~i~ 304 (479)
T PRK14727 250 QASLVE--H-DDN---GFVLTT----------------GH-GELRAEKLLISTGRHANTH-DL-NLEAVGVTTDTSGAIV 304 (479)
T ss_pred EEEEEE--E-eCC---EEEEEE----------------cC-CeEEeCEEEEccCCCCCcc-CC-CchhhCceecCCCCEE
Confidence 888886 3 122 122211 11 2589999999999999872 11 1355688888899999
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++ ++|++|+|||+|||+..+.... .|+.+|+.+|.+|..
T Consensus 305 Vd~~--~~Ts~~~IyA~GD~~~~~~~~~-~A~~~G~~aa~~i~g 345 (479)
T PRK14727 305 VNPA--METSAPDIYAAGDCSDLPQFVY-VAAAAGSRAGINMTG 345 (479)
T ss_pred ECCC--eecCCCCEEEeeecCCcchhhh-HHHHHHHHHHHHHcC
Confidence 9998 7899999999999987776555 799999999999864
No 67
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.96 E-value=5.7e-27 Score=243.87 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=181.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCCc-eecccCCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDH--------------------- 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~ggl-~~~g~~p~~--------------------- 68 (483)
.++|+||||||||++||..|++.+ .+|+|||+.+ .+||. +..|+.|..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 479999999999999999999999 9999999732 25664 555665631
Q ss_pred -----CChHHHHHHHHHH-----------HhcCCeEEEeCeEE---ceEEEecc----eeeccCEEEEccCCCCCCCC-C
Q 011535 69 -----PETKIVINQFSRV-----------VQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRAL-G 124 (483)
Q Consensus 69 -----~~~~~~~~~~~~~-----------~~~~~v~~~~~~~v---~~~~~~~~----~~~~yd~vvlAtG~~~~~~~-~ 124 (483)
....++...+... ++..+++++.+... ...+.+.+ ....||+||||||+ .|..| +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs-~p~~p~~ 161 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG-RPSIPED 161 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-CCCCCCC
Confidence 1112222222222 22346666654332 11233221 23579999999999 45544 5
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
+||.+.. .+++.++.. +. ..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 162 i~G~~~~-~~~~~~~~~----------~~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~ 206 (499)
T PTZ00052 162 VPGAKEY-SITSDDIFS----------LS---KDPGKTLIVGASYIGLETAGFLNE--------------------LG-F 206 (499)
T ss_pred CCCccce-eecHHHHhh----------hh---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 8875421 223322211 00 135789999999999999999985 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+||++.++. ....+. +...+.+.+.|. ++||+
T Consensus 207 ~Vtli~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~GV~ 238 (499)
T PTZ00052 207 DVTVAVRSI-PLRGFD----------------------------------RQCSEKVVEYMK-------------EQGTL 238 (499)
T ss_pred cEEEEEcCc-ccccCC----------------------------------HHHHHHHHHHHH-------------HcCCE
Confidence 799998743 222221 111222233333 67899
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. . .++.+ .+.+. ++ +++++|.||+|+|++|+. ..+. .+..++.+++
T Consensus 239 i~~~~~v~~v~--~-~~~~~-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~-~~l~-l~~~g~~~~~ 294 (499)
T PTZ00052 239 FLEGVVPINIE--K-MDDKI-KVLFS----------------DG--TTELFDTVLYATGRKPDI-KGLN-LNAIGVHVNK 294 (499)
T ss_pred EEcCCeEEEEE--E-cCCeE-EEEEC----------------CC--CEEEcCEEEEeeCCCCCc-cccC-chhcCcEECC
Confidence 99999888886 3 12222 22221 12 268999999999999986 2111 2567888888
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++.+++ .+|+.|+|||+|||+.+.......|+.+|+.+|.+|..
T Consensus 295 ~G~ii~~~---~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 295 SNKIIAPN---DCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred CCCEeeCC---CcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence 89876654 26899999999999864434444799999999999964
No 68
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.96 E-value=2.4e-26 Score=242.96 Aligned_cols=301 Identities=13% Similarity=0.099 Sum_probs=186.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-CCCCC-ceecccCCCCC---------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFG-LVRSGVAPDHP--------------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~~~gg-l~~~g~~p~~~--------------------------- 69 (483)
.++|+|||+||+|+.+|..+++.| .+|+|||+. ..+|| .+..|+.|...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G--~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 469999999999999999999999 999999975 23454 35555555211
Q ss_pred --------------------ChHHHH-----------HHHHHHHhcCC-------eEEEeCeEE--c-eEEEec-c-eee
Q 011535 70 --------------------ETKIVI-----------NQFSRVVQHER-------CSFFGNVTL--G-SSVSLS-E-LRQ 106 (483)
Q Consensus 70 --------------------~~~~~~-----------~~~~~~~~~~~-------v~~~~~~~v--~-~~~~~~-~-~~~ 106 (483)
....+. ..+...++..+ ++++.+... . ..+... + ...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 011111 11222233332 555544331 1 122221 2 234
Q ss_pred ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCcccc
Q 011535 107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA 186 (483)
Q Consensus 107 ~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~ 186 (483)
.||+||||||+ .|..|++++.+..+++++.+...+ . ..+++|+|||+|.+|+|+|..|..
T Consensus 274 ~ad~lIIATGS-~P~~P~~~~~~~~~V~ts~d~~~l----------~---~lpk~VvIVGgG~iGvE~A~~l~~------ 333 (659)
T PTZ00153 274 KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVKL----------E---GLQNYMGIVGMGIIGLEFMDIYTA------ 333 (659)
T ss_pred ECCEEEEcCCC-CCCCCCCCCCCCCcEEehHHhhhh----------h---hcCCceEEECCCHHHHHHHHHHHh------
Confidence 79999999999 566666666555667766544321 0 035799999999999999988875
Q ss_pred ccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHH
Q 011535 187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLS 266 (483)
Q Consensus 187 ~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~ 266 (483)
.+ .+|+++.+.+.+...+.. + ..+.+.+.+.
T Consensus 334 --------------~G-~eVTLIe~~~~ll~~~d~-e---------------------------------is~~l~~~ll 364 (659)
T PTZ00153 334 --------------LG-SEVVSFEYSPQLLPLLDA-D---------------------------------VAKYFERVFL 364 (659)
T ss_pred --------------CC-CeEEEEeccCcccccCCH-H---------------------------------HHHHHHHHHh
Confidence 34 589999998765432221 1 1111112111
Q ss_pred HHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 267 KAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
.++||+++++..+.++. .++++....+.+.... .++..+. ....++.+++++|.||||+|++|
T Consensus 365 ------------~~~GV~I~~~~~V~~I~--~~~~~~~v~v~~~~~~-~~~~~~~--~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 365 ------------KSKPVRVHLNTLIEYVR--AGKGNQPVIIGHSERQ-TGESDGP--KKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred ------------hcCCcEEEcCCEEEEEE--ecCCceEEEEEEeccc-ccccccc--ccccccceEEEcCEEEEEECccc
Confidence 15789999999999997 3112211122221100 0000000 00011224799999999999999
Q ss_pred CCCCCCCccCCCCcccCCCCeeeecCCCCCCcc------cCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 347 VPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQV------ENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 347 ~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~------~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+. ..+. .+..++..+ +|+|.||++ ++|+ +|+|||+|||...+.-. ..|..||+.++++|..
T Consensus 428 nt-~~L~-l~~~gi~~~-~G~I~VDe~--lqTs~~~~~~v~~IYAiGDv~g~~~La-~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 428 NT-NNLG-LDKLKIQMK-RGFVSVDEH--LRVLREDQEVYDNIFCIGDANGKQMLA-HTASHQALKVVDWIEG 494 (659)
T ss_pred CC-ccCC-chhcCCccc-CCEEeECCC--CCcCCCCCCCCCCEEEEEecCCCccCH-HHHHHHHHHHHHHHcC
Confidence 86 2221 244567665 499999998 6665 69999999997655444 4799999999999975
No 69
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.95 E-value=1e-26 Score=239.57 Aligned_cols=281 Identities=12% Similarity=0.157 Sum_probs=179.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC--------------------------ChH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------------------------ETK 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~--------------------------~~~ 72 (483)
.++|+|||+||+|+.+|.. ..| .+|+|||+...-|-+++.|+.|... ..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FAD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCC--CeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 4799999999999998654 357 9999999865444455666655311 111
Q ss_pred HHH--------HHHH----HH-H--hcCCeEEEeCeEE---ceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCe
Q 011535 73 IVI--------NQFS----RV-V--QHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (483)
Q Consensus 73 ~~~--------~~~~----~~-~--~~~~v~~~~~~~v---~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v 133 (483)
.+. ..+. .. . +..+++++.+... ...+.+.++ ...||+||||||+ .|..|++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs-~p~~p~~~~~~~~~~ 156 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS-RPYIPPAIADSGVRY 156 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC-CCCCCCCCCCCCCEE
Confidence 111 1111 11 1 2257887776543 223444443 3479999999999 455544333221112
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+..+... +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+
T Consensus 157 ~~~~~~~~----------l~---~~~k~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtli~~~~ 202 (452)
T TIGR03452 157 HTNEDIMR----------LP---ELPESLVIVGGGYIAAEFAHVFSA--------------------LG-TRVTIVNRST 202 (452)
T ss_pred EcHHHHHh----------hh---hcCCcEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEEccC
Confidence 22222211 00 135799999999999999999875 34 5799999876
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. . ... +.+.+.. +.+|+++++..+.+
T Consensus 203 ~ll~~~d-~---------------------------------~~~----~~l~~~~----------~~gI~i~~~~~V~~ 234 (452)
T TIGR03452 203 KLLRHLD-E---------------------------------DIS----DRFTEIA----------KKKWDIRLGRNVTA 234 (452)
T ss_pred ccccccC-H---------------------------------HHH----HHHHHHH----------hcCCEEEeCCEEEE
Confidence 5421111 0 111 1121111 34799999998888
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . +++.+ .+.+. ++ +++++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 235 i~--~-~~~~v-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~~-~l~-~~~~gl~~~~~G~i~vd~~ 290 (452)
T TIGR03452 235 VE--Q-DGDGV-TLTLD----------------DG--STVTADVLLVATGRVPNGD-LLD-AEAAGVEVDEDGRIKVDEY 290 (452)
T ss_pred EE--E-cCCeE-EEEEc----------------CC--CEEEcCEEEEeeccCcCCC-CcC-chhcCeeECCCCcEeeCCC
Confidence 87 3 23322 12211 22 3799999999999999861 111 2456888888999999998
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.-.. .|.+||+.+|+||..
T Consensus 291 --~~Ts~~~IyA~GD~~~~~~l~~-~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 --GRTSARGVWALGDVSSPYQLKH-VANAEARVVKHNLLH 327 (452)
T ss_pred --cccCCCCEEEeecccCcccChh-HHHHHHHHHHHHhcC
Confidence 6799999999999987554444 699999999999974
No 70
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-26 Score=202.66 Aligned_cols=291 Identities=19% Similarity=0.263 Sum_probs=208.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC----CCCCCceec----ccCCCCC---ChHHHHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRS----GVAPDHP---ETKIVINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~----~~~ggl~~~----g~~p~~~---~~~~~~~~~~~~~~~~~v 87 (483)
+.+|+|||+|||+..||+++++.. ++-+|||-- -.+||.+.. .-.|++| .-.++.+.++++..+.|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 458999999999999999999998 899999843 235666532 1225554 345788889999999999
Q ss_pred EEEeCeEEceEEE-------ecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCC--CCCCCCCCC
Q 011535 88 SFFGNVTLGSSVS-------LSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKS 158 (483)
Q Consensus 88 ~~~~~~~v~~~~~-------~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~ 158 (483)
+++..++-..+++ .+.....+|+||+|||+ ..+.+.+||... +-| |-.+...+ ++-...+.+
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGA-sAkRl~~pg~ge-~~f-------WqrGiSaCAVCDGaapifr 156 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGA-SAKRLHLPGEGE-GEF-------WQRGISACAVCDGAAPIFR 156 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEeccc-ceeeeecCCCCc-chH-------HhcccchhhcccCcchhhc
Confidence 8887765433222 23333469999999999 567778888621 111 21121111 111222347
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+|..+|||||.+++|-|..|.+ -.++|+||.|++.+.+
T Consensus 157 nk~laVIGGGDsA~EEA~fLtk---------------------yaskVyii~Rrd~fRA--------------------- 194 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTK---------------------YASKVYIIHRRDHFRA--------------------- 194 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHh---------------------hccEEEEEEEhhhhhH---------------------
Confidence 8999999999999999999986 4578999999975311
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
...+.+.+. ...+|++++++...+.. + +.+.+..+++.++
T Consensus 195 -----------------------s~~Mq~ra~--------~npnI~v~~nt~~~ea~--g-d~~~l~~l~ikn~------ 234 (322)
T KOG0404|consen 195 -----------------------SKIMQQRAE--------KNPNIEVLYNTVAVEAL--G-DGKLLNGLRIKNV------ 234 (322)
T ss_pred -----------------------HHHHHHHHh--------cCCCeEEEechhhhhhc--c-CcccccceEEEec------
Confidence 122222222 26789999999999988 6 3455666766553
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-Ccchh
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTGII 397 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~~~ 397 (483)
.+|+...++++-+++++|-.|++ .|.+. .++++.+|+|++.+.. ..|++||+||+||+... -.+.+
T Consensus 235 -------~tge~~dl~v~GlFf~IGH~Pat----~~l~g-qve~d~~GYi~t~pgt-s~TsvpG~FAAGDVqD~kyRQAv 301 (322)
T KOG0404|consen 235 -------KTGEETDLPVSGLFFAIGHSPAT----KFLKG-QVELDEDGYIVTRPGT-SLTSVPGVFAAGDVQDKKYRQAV 301 (322)
T ss_pred -------ccCcccccccceeEEEecCCchh----hHhcC-ceeeccCceEEeccCc-ccccccceeeccccchHHHHHHH
Confidence 36777799999999999999987 34443 7889999999988765 77999999999999753 23444
Q ss_pred HhhHHHHHHHHHHHHHHHh
Q 011535 398 ATNLYCAEETVASISEDLE 416 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~ 416 (483)
+|...|..+|....++|.
T Consensus 302 -TaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 302 -TAAGSGCIAALDAERYLT 319 (322)
T ss_pred -hhhccchhhhhhHHHHhh
Confidence 678888888877777765
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=9.5e-26 Score=251.35 Aligned_cols=281 Identities=21% Similarity=0.175 Sum_probs=198.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc--CCCCCChHHHHHHHHHHHhcC-CeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHPETKIVINQFSRVVQHE-RCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~--~p~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v 95 (483)
.++|+|||||||||+||..+++.+ ++|+|||+.+.+||.+.+.. .++ ....++...+.+.+... ++++..++.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 578999999999999999999998 99999999999999876422 122 22334444444444444 5888877654
Q ss_pred ce-----------EEE----------ecce--eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCC
Q 011535 96 GS-----------SVS----------LSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNL 152 (483)
Q Consensus 96 ~~-----------~~~----------~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~ 152 (483)
.. ... ..+. ...||.||||||+ .++++++||.+.++|+++.....+++..
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa-~~r~~pipG~~~pgV~~~~~~~~~l~~~------ 312 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA-HERPLVFANNDRPGVMLAGAARTYLNRY------ 312 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC-CCcCCCCCCCCCCCcEEchHHHHHHHhh------
Confidence 11 000 0011 2469999999999 5888899999999999875544333221
Q ss_pred CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCC
Q 011535 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN 232 (483)
Q Consensus 153 ~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~ 232 (483)
....+++|+|||+|++|+|+|..|.+ .+.+.|+++.+++...
T Consensus 313 --~~~~gk~VvViG~G~~g~e~A~~L~~--------------------~G~~vV~vv~~~~~~~---------------- 354 (985)
T TIGR01372 313 --GVAPGKRIVVATNNDSAYRAAADLLA--------------------AGIAVVAIIDARADVS---------------- 354 (985)
T ss_pred --CcCCCCeEEEECCCHHHHHHHHHHHH--------------------cCCceEEEEccCcchh----------------
Confidence 11257899999999999999999986 6777889987664220
Q ss_pred eeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeee
Q 011535 233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (483)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~ 312 (483)
..+.+.+. +.||+++++..+.++. + ++++.+|++...
T Consensus 355 --------------------------~~l~~~L~-------------~~GV~i~~~~~v~~i~--g--~~~v~~V~l~~~ 391 (985)
T TIGR01372 355 --------------------------PEARAEAR-------------ELGIEVLTGHVVAATE--G--GKRVSGVAVARN 391 (985)
T ss_pred --------------------------HHHHHHHH-------------HcCCEEEcCCeEEEEe--c--CCcEEEEEEEec
Confidence 01112222 6689999999999997 4 567777776531
Q ss_pred eeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcc--cCCC--CeeeecCCCCCCcccCceeeecc
Q 011535 313 ALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV--PNIR--GRVLKNISGDSSQVENGLYVCGW 388 (483)
Q Consensus 313 ~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~--~~~~--G~v~v~~~~~~~t~~p~vya~Gd 388 (483)
+++.++++||.|++++|++|+. .+....|+. .++. +++ ..|++|+||++||
T Consensus 392 --------------~g~~~~i~~D~V~va~G~~Pnt----~L~~~lg~~~~~~~~~~~~~-------~~t~v~gVyaaGD 446 (985)
T TIGR01372 392 --------------GGAGQRLEADALAVSGGWTPVV----HLFSQRGGKLAWDAAIAAFL-------PGDAVQGCILAGA 446 (985)
T ss_pred --------------CCceEEEECCEEEEcCCcCchh----HHHHhcCCCeeeccccCcee-------cCCCCCCeEEeec
Confidence 2445689999999999999987 233333332 2221 222 2267899999999
Q ss_pred CCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 389 LKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 389 ~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
++ +..++. .|+.+|..+|..|+.++..
T Consensus 447 ~~-g~~~~~-~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 447 AN-GLFGLA-AALADGAAAGAAAARAAGF 473 (985)
T ss_pred cC-CccCHH-HHHHHHHHHHHHHHHHcCC
Confidence 86 666776 7999999999999998864
No 72
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=6.1e-25 Score=204.76 Aligned_cols=285 Identities=18% Similarity=0.233 Sum_probs=194.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCC--------------------C-----Ch
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDH--------------------P-----ET 71 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~--------------------~-----~~ 71 (483)
..++.+|||||-+|+.+|++++..| .++.|+|-.-..|| .+.+|+.|.. + +.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 4689999999999999999999999 99999998745555 3455554421 0 00
Q ss_pred ---------HHHHH----HHHHHHhcCCeEEEeCeEE-c----eEEEeccee---eccCEEEEccCCCCCCCCCCCCCCC
Q 011535 72 ---------KIVIN----QFSRVVQHERCSFFGNVTL-G----SSVSLSELR---QLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 72 ---------~~~~~----~~~~~~~~~~v~~~~~~~v-~----~~~~~~~~~---~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
+..+. .+++.+...+++++.+..- . -++...++. ....+++||||. .|..|.|||.++
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg-~p~~PnIpG~E~ 175 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG-RPIIPNIPGAEL 175 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC-ccCCCCCCchhh
Confidence 01111 2334445556777665432 1 123334443 246789999999 677789999764
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
. .++..|.. ++ ..+++++|||+|++|+|+|..+.. .+ .+++++.
T Consensus 176 g--idSDgff~----------Le---e~Pkr~vvvGaGYIavE~Agi~~g--------------------Lg-sethlfi 219 (478)
T KOG0405|consen 176 G--IDSDGFFD----------LE---EQPKRVVVVGAGYIAVEFAGIFAG--------------------LG-SETHLFI 219 (478)
T ss_pred c--cccccccc----------hh---hcCceEEEEccceEEEEhhhHHhh--------------------cC-CeeEEEE
Confidence 2 12222221 11 156899999999999999999985 34 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 290 (483)
|.......|.. -++.-+.+.+. .+||++|.+++
T Consensus 220 R~~kvLR~FD~----------------------------------~i~~~v~~~~~-------------~~ginvh~~s~ 252 (478)
T KOG0405|consen 220 RQEKVLRGFDE----------------------------------MISDLVTEHLE-------------GRGINVHKNSS 252 (478)
T ss_pred ecchhhcchhH----------------------------------HHHHHHHHHhh-------------hcceeeccccc
Confidence 98766544441 11111222222 78999999999
Q ss_pred cceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee
Q 011535 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 291 ~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v 370 (483)
+.++.. . +++-...+. ..+ ....+|.++||+|.+|++ .+|.+ ++.|+.++++|.|.+
T Consensus 253 ~~~v~K-~-~~g~~~~i~-----------------~~~--~i~~vd~llwAiGR~Pnt-k~L~l-e~vGVk~~~~g~Iiv 309 (478)
T KOG0405|consen 253 VTKVIK-T-DDGLELVIT-----------------SHG--TIEDVDTLLWAIGRKPNT-KGLNL-ENVGVKTDKNGAIIV 309 (478)
T ss_pred ceeeee-c-CCCceEEEE-----------------ecc--ccccccEEEEEecCCCCc-ccccc-hhcceeeCCCCCEEE
Confidence 999872 2 233221111 112 244599999999999987 34433 678999999999999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
|++ +.|++|+||++||+. +.....+.|++.|+.+++.+...
T Consensus 310 DeY--q~Tnvp~I~avGDv~-gk~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 310 DEY--QNTNVPSIWAVGDVT-GKINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred ecc--ccCCCCceEEecccc-CcEecchHHHhhhhhHHHHhhcC
Confidence 998 999999999999995 55555567999999888877664
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=208.97 Aligned_cols=285 Identities=20% Similarity=0.248 Sum_probs=202.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc--c-----CCCCCChHHHHHHHHHHHhcCCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--V-----APDHPETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g--~-----~p~~~~~~~~~~~~~~~~~~~~v~~ 89 (483)
+..++|+||||||||-+||.+.+|+| ++.-++- ...||....- + .|. .+-..+...+++..+++.+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKG--iRTGl~a--erfGGQvldT~~IENfIsv~~-teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKG--IRTGLVA--ERFGGQVLDTMGIENFISVPE-TEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhc--chhhhhh--hhhCCeeccccchhheecccc-ccchHHHHHHHHHHhhcCchh
Confidence 45799999999999999999999999 8877774 3456654321 1 122 222345666777777766655
Q ss_pred EeCeEE---------c--eEEEecceee-ccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCC
Q 011535 90 FGNVTL---------G--SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSP 154 (483)
Q Consensus 90 ~~~~~v---------~--~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~ 154 (483)
...... + ..+++.++.. ....+|||||+ .++..++||++ .+||- |+ -|++ .
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA-rWRn~nvPGE~e~rnKGVa----yC----PHCD-----G 349 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA-RWRNMNVPGEDEYRNKGVA----YC----PHCD-----G 349 (520)
T ss_pred hhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc-chhcCCCCchHHHhhCCee----eC----CCCC-----C
Confidence 332111 1 2355555543 58899999999 68889999987 44543 22 2222 2
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCee
Q 011535 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY 234 (483)
Q Consensus 155 ~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~ 234 (483)
.+.++|+|+||||||+|+|.|..|+- -+++||++.-.+.+
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAG---------------------iv~hVtllEF~~eL------------------- 389 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEL------------------- 389 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHh---------------------hhheeeeeecchhh-------------------
Confidence 34489999999999999999999984 45788887533221
Q ss_pred EEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeee
Q 011535 235 VHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (483)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l 314 (483)
... +.|.+... .-.++.+..+...++|. + +..+|.++++.+.
T Consensus 390 ------------------kAD-------~VLq~kl~--------sl~Nv~ii~na~Ttei~--G-dg~kV~Gl~Y~dr-- 431 (520)
T COG3634 390 ------------------KAD-------AVLQDKLR--------SLPNVTIITNAQTTEVK--G-DGDKVTGLEYRDR-- 431 (520)
T ss_pred ------------------hhH-------HHHHHHHh--------cCCCcEEEecceeeEEe--c-CCceecceEEEec--
Confidence 001 11221111 14678999999999998 7 4578888887762
Q ss_pred eCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc
Q 011535 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT 394 (483)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~ 394 (483)
.+|+...++-+-|+.-+|.-||+ .|.+.. +.+++.|.|++|.. ..|++|||||+|||...|.
T Consensus 432 -----------~sge~~~l~LeGvFVqIGL~PNT----~WLkg~-vel~~rGEIivD~~--g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 432 -----------VSGEEHHLELEGVFVQIGLLPNT----EWLKGA-VELNRRGEIIVDAR--GETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred -----------cCCceeEEEeeeeEEEEecccCh----hHhhch-hhcCcCccEEEecC--CCcCCCceeecCcccCCcc
Confidence 25666789999999999999998 587765 88999999999998 7899999999999987664
Q ss_pred chhHhhHHHHHHHHHHHHHHHh
Q 011535 395 GIIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 395 ~~~~~a~~~g~~~a~~I~~~l~ 416 (483)
..+-.+|..|..++-....+|-
T Consensus 494 KQIIIamG~GA~AaL~AFDyLI 515 (520)
T COG3634 494 KQIIIAMGEGAKASLSAFDYLI 515 (520)
T ss_pred ceEEEEecCcchhhhhhhhhhe
Confidence 4333789888888877666653
No 74
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=217.53 Aligned_cols=271 Identities=18% Similarity=0.252 Sum_probs=197.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCceecccCCCCC--ChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHP--ETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl~~~g~~p~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..+.++|||+|++|..|+..+...++--+++++-+... |+.-.+. |... ..++......++.+..+++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~L---s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARL---SKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhc---ccceeeccccccccChhhHhhcCceEEEcce
Confidence 46899999999999999999999997778888875543 3322111 1111 1123334455677888999999987
Q ss_pred Ec------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 95 v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
+. +.+.+.++. ..|++++||||+ .++.+++||.+.++++.-++... ...+........+|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs-~~~~l~~pG~~~~nv~~ireied-------a~~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGS-SAKTLDIPGVELKNVFYLREIED-------ANRLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecC-ccccCCCCCccccceeeeccHHH-------HHHHHHHhccCceEEEECc
Confidence 73 234444444 369999999999 78889999999888876655431 1111112224678999999
Q ss_pred CchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCC
Q 011535 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (483)
Q Consensus 168 G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~ 247 (483)
|..|+|+|..|.. ...+||++.+.+.....+
T Consensus 222 G~ig~Evaa~l~~---------------------~~~~VT~V~~e~~~~~~l---------------------------- 252 (478)
T KOG1336|consen 222 GFIGMEVAAALVS---------------------KAKSVTVVFPEPWLLPRL---------------------------- 252 (478)
T ss_pred hHHHHHHHHHHHh---------------------cCceEEEEccCccchhhh----------------------------
Confidence 9999999999985 578999999886543211
Q ss_pred cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccC
Q 011535 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (483)
Q Consensus 248 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~ 327 (483)
-.+.+.++..+.+. ++||+++.++.+.++. +..+|.+..|.+.+
T Consensus 253 -----f~~~i~~~~~~y~e-------------~kgVk~~~~t~~s~l~--~~~~Gev~~V~l~d---------------- 296 (478)
T KOG1336|consen 253 -----FGPSIGQFYEDYYE-------------NKGVKFYLGTVVSSLE--GNSDGEVSEVKLKD---------------- 296 (478)
T ss_pred -----hhHHHHHHHHHHHH-------------hcCeEEEEecceeecc--cCCCCcEEEEEecc----------------
Confidence 11334444445554 7899999999999998 43467777776654
Q ss_pred CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP 393 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~ 393 (483)
+.+++||+||.++|.+|++ .+.+. +..++..|.+.|++. ++|++|+|||+||+++-|
T Consensus 297 --g~~l~adlvv~GiG~~p~t----~~~~~-g~~~~~~G~i~V~~~--f~t~~~~VyAiGDva~fp 353 (478)
T KOG1336|consen 297 --GKTLEADLVVVGIGIKPNT----SFLEK-GILLDSKGGIKVDEF--FQTSVPNVYAIGDVATFP 353 (478)
T ss_pred --CCEeccCeEEEeecccccc----ccccc-cceecccCCEeehhc--eeeccCCcccccceeecc
Confidence 2489999999999999987 34454 777889999999998 889999999999999644
No 75
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=2.1e-25 Score=227.37 Aligned_cols=319 Identities=18% Similarity=0.242 Sum_probs=228.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCC--CceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPF--GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~g--gl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+++|||.|+||..+...+++..| ..+|++|-..|++. -.+...+.++..+.+++...-.+++++.+++++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 5789999999999999999999654 47999998877652 12222344555567777777788889999999998776
Q ss_pred c------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCC
Q 011535 96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (483)
Q Consensus 96 ~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G 168 (483)
. +.++.+.+. ..||.||||||| .|..+++||.++++++..+.+...+... ++ .+..++.+|||||
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS-~pfi~PiPG~~~~~v~~~R~i~D~~am~-~~------ar~~~~avVIGGG 154 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGS-YPFILPIPGSDLPGVFVYRTIDDVEAML-DC------ARNKKKAVVIGGG 154 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCc-cccccCCCCCCCCCeeEEecHHHHHHHH-HH------HhccCCcEEEccc
Confidence 2 345555544 469999999999 5787889999999999877665332211 11 1245678999999
Q ss_pred chHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc
Q 011535 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (483)
Q Consensus 169 ~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 248 (483)
..|+|+|..|.. .+ -++++++-.+.+.
T Consensus 155 LLGlEaA~~L~~--------------------~G-m~~~Vvh~~~~lM-------------------------------- 181 (793)
T COG1251 155 LLGLEAARGLKD--------------------LG-MEVTVVHIAPTLM-------------------------------- 181 (793)
T ss_pred hhhhHHHHHHHh--------------------CC-CceEEEeecchHH--------------------------------
Confidence 999999999985 34 3566665443221
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCC
Q 011535 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (483)
Q Consensus 249 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g 328 (483)
+. ++.+.--++|+.... ++|++++++....++. + .+.+.++++.+ |
T Consensus 182 --er---QLD~~ag~lL~~~le---------~~Gi~~~l~~~t~ei~--g--~~~~~~vr~~D--------G-------- 227 (793)
T COG1251 182 --ER---QLDRTAGRLLRRKLE---------DLGIKVLLEKNTEEIV--G--EDKVEGVRFAD--------G-------- 227 (793)
T ss_pred --HH---hhhhHHHHHHHHHHH---------hhcceeecccchhhhh--c--CcceeeEeecC--------C--------
Confidence 00 111111122322222 7899999999999987 4 77777777754 2
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---CcchhHhhHHHHH
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGIIATNLYCAE 405 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~~~~a~~~g~ 405 (483)
..+++|+|+||+|++|+. .+....|+.+|+ |. +++++ ++|+.|+|||+|+|+.. -.|.++.+..|++
T Consensus 228 --~~i~ad~VV~a~GIrPn~----ela~~aGlavnr-GI-vvnd~--mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~ 297 (793)
T COG1251 228 --TEIPADLVVMAVGIRPND----ELAKEAGLAVNR-GI-VVNDY--MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAK 297 (793)
T ss_pred --CcccceeEEEeccccccc----HhHHhcCcCcCC-Ce-eeccc--ccccCCCeeehhhHHHhcCccceehhHHHHHHH
Confidence 389999999999999987 466778898887 54 55555 89999999999999853 2355667888888
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHH
Q 011535 406 ETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWE 452 (483)
Q Consensus 406 ~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~ 452 (483)
++|+++.....+ .+ .-...++.|+..|+.+.|.+|.+
T Consensus 298 v~a~hl~~~~~~----~y------~gsv~stkLKv~Gvdl~S~GD~~ 334 (793)
T COG1251 298 VLADHLCGGEAE----AY------EGSVTSTKLKVSGVDVFSAGDFQ 334 (793)
T ss_pred HHHHHhccCccc----cc------ccccchhhhcccccceeeccchh
Confidence 888877655433 12 22345778899999999988776
No 76
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=2.9e-25 Score=212.85 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=198.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcC--CeEEEeCe
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHE--RCSFFGNV 93 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~--~v~~~~~~ 93 (483)
..+++|||+|+|.+|.+++..|-... ++|++|++.++. +-.+.+.+.-+-.+.+.+.+.....++.. +++++...
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 35789999999999999999998887 999999977652 33333333223334567777777776654 46666554
Q ss_pred EEce-----EEEe-----cc----eeeccCEEEEccCCCCCCCCCCCCCC-----CCCeeecceeeeeecCCCCCCCC--
Q 011535 94 TLGS-----SVSL-----SE----LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNL-- 152 (483)
Q Consensus 94 ~v~~-----~~~~-----~~----~~~~yd~vvlAtG~~~~~~~~ipg~~-----~~~v~~a~~~~~~~~~~~~~~~~-- 152 (483)
.... .++. .. ....||+||+|+|+ .+..++|||.. ++.+.++.++...+-...+...+
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA-~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~ 209 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA-EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPG 209 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccC-CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Confidence 4321 1221 11 22369999999999 68888999854 45555555543322211111111
Q ss_pred --CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC-CccEEEEEeecCcccccCCHHHHHHHhc
Q 011535 153 --SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGPVQAACTAKELREILG 229 (483)
Q Consensus 153 --~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~-~~~~V~li~r~~~~~~~f~~~el~~~~~ 229 (483)
+++.++-.++||||||++|+|+|.+|+. +|.+..-+++-.. .--+||++...+.+...|
T Consensus 210 l~~eerkRlLh~VVVGGGPTGVEFAaEL~D--------fi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mF---------- 271 (491)
T KOG2495|consen 210 LSDEERKRLLHFVVVGGGPTGVEFAAELAD--------FIPEDLRKIYPELKKDIKVTLIEAADHILNMF---------- 271 (491)
T ss_pred CChHHhhheEEEEEECCCCcceeehHHHHH--------HHHHHHHHhhhcchhheEEEeeccchhHHHHH----------
Confidence 1112234589999999999999999985 3333332222111 112466665554332222
Q ss_pred CCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEE
Q 011535 230 IKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHF 309 (483)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~ 309 (483)
.+|+.+...+.. .+.+|.++.++.++.+. . . .+..
T Consensus 272 ----------------------------dkrl~~yae~~f---------~~~~I~~~~~t~Vk~V~--~---~---~I~~ 306 (491)
T KOG2495|consen 272 ----------------------------DKRLVEYAENQF---------VRDGIDLDTGTMVKKVT--E---K---TIHA 306 (491)
T ss_pred ----------------------------HHHHHHHHHHHh---------hhccceeecccEEEeec--C---c---EEEE
Confidence 222222222222 26789999888888885 2 2 2332
Q ss_pred eeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC--eeeecCCCCCCcccCceeeec
Q 011535 310 EKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG--RVLKNISGDSSQVENGLYVCG 387 (483)
Q Consensus 310 ~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G--~v~v~~~~~~~t~~p~vya~G 387 (483)
.. .+|+.++||..+++|+||..|.++. ....-..++.| ++.+|+++ +..+.+||||+|
T Consensus 307 ~~--------------~~g~~~~iPYG~lVWatG~~~rp~~-----k~lm~~i~e~~rr~L~vDE~L-rV~G~~nvfAiG 366 (491)
T KOG2495|consen 307 KT--------------KDGEIEEIPYGLLVWATGNGPRPVI-----KDLMKQIDEQGRRGLAVDEWL-RVKGVKNVFAIG 366 (491)
T ss_pred Ec--------------CCCceeeecceEEEecCCCCCchhh-----hhHhhcCCccCceeeeeecee-eccCcCceEEec
Confidence 22 1456679999999999999997732 22222344555 77889988 788999999999
Q ss_pred cCCCC----CcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 388 WLKRG----PTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 388 d~~~g----~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
||+.. |.+. .|.+||..+|.++-.....+.+
T Consensus 367 Dca~~~~~~~tAQ--VA~QqG~yLAk~fn~m~k~~~~ 401 (491)
T KOG2495|consen 367 DCADQRGLKPTAQ--VAEQQGAYLAKNFNKMGKGGNL 401 (491)
T ss_pred cccccccCccHHH--HHHHHHHHHHHHHHHHhcccCC
Confidence 99832 2333 4899999999988776654433
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=1.5e-23 Score=215.03 Aligned_cols=163 Identities=19% Similarity=0.271 Sum_probs=120.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc--------------------------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------------------------- 64 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------------------------------- 64 (483)
...++|+|||||||||+||++|++.| ++|+|||+++.+||.+.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 45689999999999999999999999 99999999999999886520
Q ss_pred -----CC-------------CCCChHHHHHHHHHHHhcCCeE--EEeCeEEce--------EEEecce-----eeccCEE
Q 011535 65 -----AP-------------DHPETKIVINQFSRVVQHERCS--FFGNVTLGS--------SVSLSEL-----RQLYHVV 111 (483)
Q Consensus 65 -----~p-------------~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~--------~~~~~~~-----~~~yd~v 111 (483)
.| .++...++..++++++++.++. +.+++.|.. .++..+. ...||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 01 1234467888999999888876 667766522 2332211 2359999
Q ss_pred EEccCC-CCCCCCCCCCCC-CCC-eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCcccccc
Q 011535 112 VLAYGA-ESDRALGIPGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATT 188 (483)
Q Consensus 112 vlAtG~-~~~~~~~ipg~~-~~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~ 188 (483)
|+|||. ..|+.|.+||.+ .+| ++++..+. .+ +...+|+|+|||+|++|+|+|..|..
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr-----~~-------~~~~gk~VvVVG~G~Sg~diA~~L~~-------- 225 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYR-----VP-------DPFKNEVVVVIGNFASGADISRDIAK-------- 225 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccC-----Cc-------cccCCCEEEEECCCcCHHHHHHHHHH--------
Confidence 999996 357778899874 343 23333222 11 12278999999999999999999985
Q ss_pred ccchHHHHHHhcCCccEEEEEeecCc
Q 011535 189 DIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 189 di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+++.|++.
T Consensus 226 -------------~a~~V~l~~r~~~ 238 (461)
T PLN02172 226 -------------VAKEVHIASRASE 238 (461)
T ss_pred -------------hCCeEEEEEeecc
Confidence 4679999999864
No 78
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.92 E-value=9.9e-24 Score=199.12 Aligned_cols=289 Identities=22% Similarity=0.322 Sum_probs=197.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCCCh-------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET------------------------- 71 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~~~------------------------- 71 (483)
..++|+|||+||+|..||..+++.| +..+++|+....||. +..|+.|.....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 4689999999999999999999999 999999999888774 455666642211
Q ss_pred --------------HHHHHHHHHHHhcCCeEEEeCeEE--c-eEEEe--cc---eeeccCEEEEccCCCCCCCCCCCCC-
Q 011535 72 --------------KIVINQFSRVVQHERCSFFGNVTL--G-SSVSL--SE---LRQLYHVVVLAYGAESDRALGIPGE- 128 (483)
Q Consensus 72 --------------~~~~~~~~~~~~~~~v~~~~~~~v--~-~~~~~--~~---~~~~yd~vvlAtG~~~~~~~~ipg~- 128 (483)
+++..-+...++..++.++.+.-. + ..++. .+ ......++|+||||..+ ++||.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~---~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT---PFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccC---CCCCeE
Confidence 111222334444455555444321 1 01211 11 12357889999998433 34564
Q ss_pred -CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEE
Q 011535 129 -DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (483)
Q Consensus 129 -~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~ 207 (483)
|.+.+.++...+. +. .-+++++|||+|..|+|+.....+ .| .+||
T Consensus 193 IDekkIVSStgALs----------L~---~vPk~~~viG~G~IGLE~gsV~~r--------------------LG-seVT 238 (506)
T KOG1335|consen 193 IDEKKIVSSTGALS----------LK---EVPKKLTVIGAGYIGLEMGSVWSR--------------------LG-SEVT 238 (506)
T ss_pred ecCceEEecCCccc----------hh---hCcceEEEEcCceeeeehhhHHHh--------------------cC-CeEE
Confidence 3444555443221 11 146899999999999999998876 44 4788
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEee
Q 011535 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (483)
Q Consensus 208 li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~ 287 (483)
++.--+.+...+. .| +.+...+.|. ..|+.|++
T Consensus 239 ~VEf~~~i~~~mD-~E---------------------------------isk~~qr~L~-------------kQgikF~l 271 (506)
T KOG1335|consen 239 VVEFLDQIGGVMD-GE---------------------------------ISKAFQRVLQ-------------KQGIKFKL 271 (506)
T ss_pred EEEehhhhccccC-HH---------------------------------HHHHHHHHHH-------------hcCceeEe
Confidence 8876654432222 11 1111222232 67999999
Q ss_pred cCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCe
Q 011535 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (483)
Q Consensus 288 ~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~ 367 (483)
++.+..+.+++ +|.| .|++++. .+++.++++||.++.|+|.+|.+ .+|.+ ++.|++.|.+||
T Consensus 272 ~tkv~~a~~~~--dg~v-~i~ve~a-------------k~~k~~tle~DvlLVsiGRrP~t-~GLgl-e~iGi~~D~r~r 333 (506)
T KOG1335|consen 272 GTKVTSATRNG--DGPV-EIEVENA-------------KTGKKETLECDVLLVSIGRRPFT-EGLGL-EKIGIELDKRGR 333 (506)
T ss_pred ccEEEEeeccC--CCce-EEEEEec-------------CCCceeEEEeeEEEEEccCcccc-cCCCh-hhcccccccccc
Confidence 99999988433 6544 3555442 25677899999999999999965 45555 567899999999
Q ss_pred eeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 368 v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|.++.. ++|.+|+||++||+..||.-.. .|-.+|..+.+.|..
T Consensus 334 v~v~~~--f~t~vP~i~~IGDv~~gpMLAh-kAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 334 VIVNTR--FQTKVPHIYAIGDVTLGPMLAH-KAEEEGIAAVEGIAG 376 (506)
T ss_pred eecccc--ccccCCceEEecccCCcchhhh-hhhhhchhheeeecc
Confidence 999986 7899999999999999998888 688999888877754
No 79
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.92 E-value=1.4e-23 Score=215.59 Aligned_cols=275 Identities=16% Similarity=0.186 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC----CC-hHHHHHH-HHHHHhcCCeEEEeCeEEce------EEE
Q 011535 33 YTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH----PE-TKIVINQ-FSRVVQHERCSFFGNVTLGS------SVS 100 (483)
Q Consensus 33 ~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~----~~-~~~~~~~-~~~~~~~~~v~~~~~~~v~~------~~~ 100 (483)
+||.+|++..++++|+|||+++.++. ..+++ |.+ .. .++.... ..+++...+++++.+..+.. .+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~-~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF-ANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE-EcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 47889988877899999999986421 11122 211 11 2222222 23455777899887755532 232
Q ss_pred ecc----eeec--cCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHH
Q 011535 101 LSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174 (483)
Q Consensus 101 ~~~----~~~~--yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~ 174 (483)
+.. .... ||+||||||+ .++.+++||.+.+++++...+..... . ...... ..+++|+|||+|++|+|+
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~-~p~~~~i~G~~~~~v~~~~~~~~~~~-~---~~~l~~-~~~~~vvViGgG~~g~e~ 152 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGA-SPIVPNIEGINLDIVFTLRNLEDTDA-I---KQYIDK-NKVENVVIIGGGYIGIEM 152 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHH-H---HHHHhh-cCCCeEEEECCCHHHHHH
Confidence 321 1234 9999999999 67778899987666665443221000 0 000000 146899999999999999
Q ss_pred HHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 175 ARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 175 A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
|..|.+ .+ .+|+++.+.+.+.. .+.
T Consensus 153 A~~l~~--------------------~g-~~Vtli~~~~~~~~~~~~--------------------------------- 178 (427)
T TIGR03385 153 AEALRE--------------------RG-KNVTLIHRSERILNKLFD--------------------------------- 178 (427)
T ss_pred HHHHHh--------------------CC-CcEEEEECCcccCccccC---------------------------------
Confidence 998875 33 47999998865421 111
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i 333 (483)
+.....+.+.+. ++||+++++..+.++. . ++.+ +.+. +| .++
T Consensus 179 -~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~--~~~~--v~~~----------------~g--~~i 220 (427)
T TIGR03385 179 -EEMNQIVEEELK-------------KHEINLRLNEEVDSIE--G--EERV--KVFT----------------SG--GVY 220 (427)
T ss_pred -HHHHHHHHHHHH-------------HcCCEEEeCCEEEEEe--c--CCCE--EEEc----------------CC--CEE
Confidence 111222223332 6789999999999986 3 3332 2211 22 379
Q ss_pred ecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------chhHhhHHHH
Q 011535 334 DCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIATNLYCA 404 (483)
Q Consensus 334 ~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---------~~~~~a~~~g 404 (483)
++|.||+|+|++|+. ++.+..|+..+++|++.+|++ ++|+.|+|||+|||+..+. .....|.+||
T Consensus 221 ~~D~vi~a~G~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 294 (427)
T TIGR03385 221 QADMVILATGIKPNS----ELAKDSGLKLGETGAIWVNEK--FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG 294 (427)
T ss_pred EeCEEEECCCccCCH----HHHHhcCcccCCCCCEEECCC--cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHH
Confidence 999999999999986 355667888888899999987 7799999999999985321 1233689999
Q ss_pred HHHHHHHHH
Q 011535 405 EETVASISE 413 (483)
Q Consensus 405 ~~~a~~I~~ 413 (483)
+.+|.||..
T Consensus 295 ~~~a~ni~g 303 (427)
T TIGR03385 295 RIAGENIAG 303 (427)
T ss_pred HHHHHHhcC
Confidence 999999863
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.89 E-value=6.2e-22 Score=205.63 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=111.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc---------c-----------------------CC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---------V-----------------------AP 66 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g---------~-----------------------~p 66 (483)
.|+|+|||||++||.+|+.|.+.| +++++||+++.+||++++. + .|
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 479999999999999999999999 9999999999999998642 0 12
Q ss_pred CCCChHHHHHHHHHHHhcCCe--EEEeCeEEce-------------EEEecc-e---eeccCEEEEccCCC-CCCCC--C
Q 011535 67 DHPETKIVINQFSRVVQHERC--SFFGNVTLGS-------------SVSLSE-L---RQLYHVVVLAYGAE-SDRAL--G 124 (483)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~-------------~~~~~~-~---~~~yd~vvlAtG~~-~~~~~--~ 124 (483)
.++...++.++++.++++.++ .+.+|+.|.. .++... + ...||+||+|||.. .|..| .
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 344557899999999998775 3667776632 233221 1 13599999999974 35544 3
Q ss_pred CCCCC--CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 125 IPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 125 ipg~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+||.+ ...++|+.+|.. + ..+ ++|+|+|||+|+||+|+|.+|++ .
T Consensus 159 ~~G~e~F~G~i~HS~~yr~-----~------~~f-~gKrVlVVG~g~Sg~DIa~el~~---------------------~ 205 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRD-----P------EPF-KGKRVLVVGGGNSGADIAVELSR---------------------V 205 (531)
T ss_dssp -CTGGGHCSEEEEGGG--T-----G------GGG-TTSEEEEESSSHHHHHHHHHHTT---------------------T
T ss_pred hhhhhcCCeeEEccccCcC-----h------hhc-CCCEEEEEeCCHhHHHHHHHHHH---------------------h
Confidence 78865 334677776542 1 123 78999999999999999999985 5
Q ss_pred ccEEEEEeecCccc
Q 011535 203 IRKVYLVGRRGPVQ 216 (483)
Q Consensus 203 ~~~V~li~r~~~~~ 216 (483)
+++|++..|++.+.
T Consensus 206 a~~v~~s~R~~~wv 219 (531)
T PF00743_consen 206 AKKVYLSTRRGAWV 219 (531)
T ss_dssp SCCEEEECC-----
T ss_pred cCCeEEEEeccccc
Confidence 67899999998654
No 81
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-21 Score=179.59 Aligned_cols=292 Identities=19% Similarity=0.275 Sum_probs=186.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-CCC-------CC-ceecccCCCCC-----------------
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTP-------FG-LVRSGVAPDHP----------------- 69 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~~~-------gg-l~~~g~~p~~~----------------- 69 (483)
.+..++++|||||.+||+||+.++..| .+|.++|-- |.| || ....|++|...
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G--~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ky 93 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLG--AKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKY 93 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcC--CcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999 999998732 222 22 23444444210
Q ss_pred -------Ch----HHHHHHHHHHHhcCC----eEEEeCeEE---------ce---EEEeccee---eccCEEEEccCCCC
Q 011535 70 -------ET----KIVINQFSRVVQHER----CSFFGNVTL---------GS---SVSLSELR---QLYHVVVLAYGAES 119 (483)
Q Consensus 70 -------~~----~~~~~~~~~~~~~~~----v~~~~~~~v---------~~---~~~~~~~~---~~yd~vvlAtG~~~ 119 (483)
.. ..+.+..++..+..+ +.+....+. +. ..+...++ ..++.+|||||. +
T Consensus 94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~-R 172 (503)
T KOG4716|consen 94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL-R 172 (503)
T ss_pred CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC-C
Confidence 00 012222333333322 111111110 00 11222222 247899999998 7
Q ss_pred CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 120 ~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
|+-|+|||...-+ .++.++.. . + . .+.+-+|||+|.+|+|||..|..
T Consensus 173 PrYp~IpG~~Ey~-ITSDDlFs----l------~--~-~PGkTLvVGa~YVaLECAgFL~g------------------- 219 (503)
T KOG4716|consen 173 PRYPDIPGAKEYG-ITSDDLFS----L------P--Y-EPGKTLVVGAGYVALECAGFLKG------------------- 219 (503)
T ss_pred CCCCCCCCceeee-eccccccc----c------c--C-CCCceEEEccceeeeehhhhHhh-------------------
Confidence 9999999954222 23333321 1 1 1 33456789999999999999985
Q ss_pred cCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011535 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~ 279 (483)
.+ -+|++..|+=.+ ..|. +.+.+.+.+++.
T Consensus 220 -fg-~~vtVmVRSI~L-rGFD--------------------------------------qdmae~v~~~m~--------- 249 (503)
T KOG4716|consen 220 -FG-YDVTVMVRSILL-RGFD--------------------------------------QDMAELVAEHME--------- 249 (503)
T ss_pred -cC-CCcEEEEEEeec-cccc--------------------------------------HHHHHHHHHHHH---------
Confidence 34 368888887321 1121 123345555554
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
++||+|.....|.+++.. +++++. |.... +.+++..+-+.|+|+||+|.++.. ..+.+ +..|
T Consensus 250 ~~Gikf~~~~vp~~Veq~--~~g~l~-v~~k~-------------t~t~~~~~~~ydTVl~AiGR~~~~-~~l~L-~~~G 311 (503)
T KOG4716|consen 250 ERGIKFLRKTVPERVEQI--DDGKLR-VFYKN-------------TNTGEEGEEEYDTVLWAIGRKALT-DDLNL-DNAG 311 (503)
T ss_pred HhCCceeecccceeeeec--cCCcEE-EEeec-------------ccccccccchhhhhhhhhccccch-hhcCC-Cccc
Confidence 789999988888888732 356532 22211 124444567899999999999865 33444 4678
Q ss_pred cccCC-CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 360 IVPNI-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 360 ~~~~~-~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+..|+ .|.|.+++. .+|++|+|||+||+..+..-..+.|+..|+.+|+.|..
T Consensus 312 Vk~n~ks~KI~v~~~--e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 312 VKTNEKSGKIPVDDE--EATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred eeecccCCccccChH--HhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 88865 588888886 78999999999999987666666899999999988765
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.78 E-value=2.2e-18 Score=158.72 Aligned_cols=156 Identities=26% Similarity=0.340 Sum_probs=102.4
Q ss_pred EEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecc------cCC---------------------------CC
Q 011535 23 CVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSG------VAP---------------------------DH 68 (483)
Q Consensus 23 vIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g------~~p---------------------------~~ 68 (483)
+|||||||||++|..|.+.+ .+ ++|||+++.+||.+... ..| .+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999999998 88 99999999888865420 001 12
Q ss_pred CChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce-eeccCEEEEccCC-CCCCCCCCCC-CCCCCeeecc
Q 011535 69 PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGA-ESDRALGIPG-EDLIGVHSAR 137 (483)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~-~~~~~~~ipg-~~~~~v~~a~ 137 (483)
+..+++..++++++++.++++..++.|.. .+++++. ...+|+||+|||. +.|+.|.++| .+. .+++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 23456778888899888888888877632 3566665 4569999999997 4577888888 433 444544
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++... .++ .+++|+|||+|++|+|+|..|++ .+ ++|+++.|++.
T Consensus 158 ~~~~~-----------~~~-~~k~V~VVG~G~SA~d~a~~l~~--------------------~g-~~V~~~~R~~~ 201 (203)
T PF13738_consen 158 DWRDP-----------EDF-KGKRVVVVGGGNSAVDIAYALAK--------------------AG-KSVTLVTRSPI 201 (203)
T ss_dssp G-STT-----------GGC-TTSEEEEE--SHHHHHHHHHHTT--------------------TC-SEEEEEESS--
T ss_pred hcCCh-----------hhc-CCCcEEEEcChHHHHHHHHHHHh--------------------hC-CEEEEEecCCC
Confidence 43211 122 67999999999999999999986 44 89999999864
No 83
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2.7e-17 Score=165.96 Aligned_cols=149 Identities=23% Similarity=0.352 Sum_probs=107.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc--------c---------------CCC-------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------V---------------APD------- 67 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g--------~---------------~p~------- 67 (483)
..++|+|||||||||.+|+.|.+.| +++++|||.+.+||++.|- - .|+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 4689999999999999999999999 9999999999999998764 0 011
Q ss_pred ---CCChHHHHHHHHHHHhcCCe--EEEeCeEEce---------EEEecce-----eeccCEEEEccCCCC-CCCCCCCC
Q 011535 68 ---HPETKIVINQFSRVVQHERC--SFFGNVTLGS---------SVSLSEL-----RQLYHVVVLAYGAES-DRALGIPG 127 (483)
Q Consensus 68 ---~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~---------~~~~~~~-----~~~yd~vvlAtG~~~-~~~~~ipg 127 (483)
++...++.+++..+++++++ .+.+++.+.+ .+...+. ..-||.|++|||-.. |+.|.++|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 13345788999999998874 3444542211 1222221 234999999999864 77777777
Q ss_pred C---CC-CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhc
Q 011535 128 E---DL-IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 128 ~---~~-~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
. .. ..++|+.++. . ++...+++|+|||.|+||+|++..++.
T Consensus 163 ~~~~~f~G~~iHS~~Yk-----~-------~e~f~~k~VlVIG~g~SG~DIs~d~~~ 207 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYK-----S-------PEKFRDKVVLVVGCGNSGMDISLDLLR 207 (448)
T ss_pred CchhhcCCcceehhhcc-----C-------cccccCceEEEECCCccHHHHHHHHHH
Confidence 3 22 2355555543 1 122378999999999999999999875
No 84
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.76 E-value=4.6e-17 Score=166.43 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=175.0
Q ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC---ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--
Q 011535 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG---LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg---l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-- 96 (483)
++|||+|+||+++|..+.+..++.+++++...+.... ...+.+.........+..... .....++.+..++.+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 5899999999999999999888889998877754321 111112111112222222222 2234567777766552
Q ss_pred ----eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 ----SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ----~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
+.+.+.++...||++++|||+. +..++ +....++++.+......... ......++++|||+|..|+
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa~-~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~vvG~G~~gl 149 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGAR-PRPPP--ISDWEGVVTLRLREDAEALK-------GGAEPPKDVVVVGAGPIGL 149 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCCc-ccCCC--ccccCceEEECCHHHHHHHH-------HHHhccCeEEEECCcHHHH
Confidence 2355555555699999999994 54443 44444454443322111100 0000247999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
++|..+.+ .| .+|+++...+.....+..
T Consensus 150 e~A~~~~~--------------------~G-~~v~l~e~~~~~~~~~~~------------------------------- 177 (415)
T COG0446 150 EAAEAAAK--------------------RG-KKVTLIEAADRLGGQLLD------------------------------- 177 (415)
T ss_pred HHHHHHHH--------------------cC-CeEEEEEcccccchhhhh-------------------------------
Confidence 99999986 45 679999888765322210
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEE
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFED 332 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~ 332 (483)
+. +.+.+.+... .+||+++++..+.++. . ..+.+.... .. ......
T Consensus 178 --~~----~~~~~~~~l~---------~~gi~~~~~~~~~~i~--~-~~~~~~~~~-~~---------------~~~~~~ 223 (415)
T COG0446 178 --PE----VAEELAELLE---------KYGVELLLGTKVVGVE--G-KGNTLVVER-VV---------------GIDGEE 223 (415)
T ss_pred --HH----HHHHHHHHHH---------HCCcEEEeCCceEEEE--c-ccCcceeeE-EE---------------EeCCcE
Confidence 11 1122222222 6789999999999997 3 222222110 00 122348
Q ss_pred EecCeEEEeeecCCCCCCCCCccCCCC-cccCCCCeeeecCCCCCCcc-cCceeeeccCCCCCc------c---hhHhhH
Q 011535 333 LDCGMVLKSIGYKSVPVNGLPFDNHKG-IVPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGPT------G---IIATNL 401 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~~l~~~~~~g-~~~~~~G~v~v~~~~~~~t~-~p~vya~Gd~~~g~~------~---~~~~a~ 401 (483)
+++|+++.++|.+|+. .+..+.+ .....+|.+.++.. ++++ .++||++|||+..+. + ....+.
T Consensus 224 ~~~d~~~~~~g~~p~~----~l~~~~~~~~~~~~g~i~v~~~--~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~ 297 (415)
T COG0446 224 IKADLVIIGPGERPNV----VLANDALPGLALAGGAVLVDER--GGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAV 297 (415)
T ss_pred EEeeEEEEeecccccH----HHHhhCccceeccCCCEEEccc--cccCCCCCEEeccceEeeecccCCceeeeechhhHh
Confidence 9999999999999975 2333333 14556788999987 6676 999999999875321 1 122455
Q ss_pred HHHHHHHHHHHH
Q 011535 402 YCAEETVASISE 413 (483)
Q Consensus 402 ~~g~~~a~~I~~ 413 (483)
.++..++.++..
T Consensus 298 ~~~~i~~~~~~~ 309 (415)
T COG0446 298 AAGRIAAENIAG 309 (415)
T ss_pred hhhHHHHHHhcc
Confidence 666666666653
No 85
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.1e-16 Score=163.81 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=115.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecccC--------------CCCC--------ChH
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVA--------------PDHP--------ETK 72 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~~--------------p~~~--------~~~ 72 (483)
.....+|+|||||++||++|.+|.+.+ .. ++|||++..+||.+++... |..+ ...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 446789999999999999999999999 66 9999999999887554211 1111 111
Q ss_pred HHHHHHHHHHhcCC----eEEEeCeEEc--------eEEEeccee---eccCEEEEccCC-CCCCCCCCCCCC--CCCee
Q 011535 73 IVINQFSRVVQHER----CSFFGNVTLG--------SSVSLSELR---QLYHVVVLAYGA-ESDRALGIPGED--LIGVH 134 (483)
Q Consensus 73 ~~~~~~~~~~~~~~----v~~~~~~~v~--------~~~~~~~~~---~~yd~vvlAtG~-~~~~~~~ipg~~--~~~v~ 134 (483)
.+..++...++.++ +.|...+.+. ..++++.+. ..+|.||+|||. ..|..|.++|.+ ...++
T Consensus 83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 24444555555444 3444444331 124444433 239999999997 458888899976 23356
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
|+.++.+ +.++ .+|+|+|||+|+||+++|.+|.+ .+ ++|+++.|++.
T Consensus 163 HS~~~~~-----------~~~~-~GKrV~VIG~GaSA~di~~~l~~--------------------~g-a~vt~~qRs~~ 209 (443)
T COG2072 163 HSADWPN-----------PEDL-RGKRVLVIGAGASAVDIAPELAE--------------------VG-ASVTLSQRSPP 209 (443)
T ss_pred chhcCCC-----------cccc-CCCeEEEECCCccHHHHHHHHHh--------------------cC-CeeEEEecCCC
Confidence 6655442 1234 89999999999999999999996 45 89999999987
Q ss_pred cc
Q 011535 215 VQ 216 (483)
Q Consensus 215 ~~ 216 (483)
..
T Consensus 210 ~~ 211 (443)
T COG2072 210 HI 211 (443)
T ss_pred ce
Confidence 54
No 86
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.70 E-value=1.7e-15 Score=147.80 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=82.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
+.||++..+ .+.++.. . .++. ..|+.+++ -+|...++++|+|++++|+.|.+-.. .+....|
T Consensus 427 ~~gV~fIRG-rvaei~e-~-p~~~-l~V~~EdT-------------l~g~~~e~~~DLVVLa~Gmep~~g~~-kia~iLg 488 (622)
T COG1148 427 DYGVRFIRG-RVAEIAE-F-PKKK-LIVRVEDT-------------LTGEVKEIEADLVVLATGMEPSEGAK-KIAKILG 488 (622)
T ss_pred hhchhhhcC-ChHHhee-C-CCCe-eEEEEEec-------------cCccceecccceEEEeeccccCcchH-HHHHhcC
Confidence 567777644 4566662 2 3444 34555553 14566799999999999999854111 1234457
Q ss_pred cccCCCCeeeecCCC--CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 360 IVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~--~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
+..+++|++...+.. ...+..+|||.+|-+ .||.-+. .++.||..+|......+..+.
T Consensus 489 L~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a-qgPkdI~-~siaqa~aAA~kA~~~l~~g~ 548 (622)
T COG1148 489 LSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA-QGPKDIA-DSIAQAKAAAAKAAQLLGRGE 548 (622)
T ss_pred cccCCCCccccCCCCcccccccCCcEEEeecc-cCCccHH-HHHHHhHHHHHHHHHHhhcCc
Confidence 777888888755331 133677899999965 7899887 799999999998888887654
No 87
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.65 E-value=1.6e-15 Score=149.76 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=133.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC---CCceecc----c----------CC----------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSG----V----------AP---------------- 66 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~---ggl~~~g----~----------~p---------------- 66 (483)
.++++||.||++|+.|..|...+ +.++..||+.+.. -|++..+ + -|
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 58999999999999999999886 6899999988752 2333221 0 01
Q ss_pred --------CCCChHHHHHHHHHHHhcCCeEEEeCeEEce------------EEEec-----ceeeccCEEEEccCCCCCC
Q 011535 67 --------DHPETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLS-----ELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 67 --------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~------------~~~~~-----~~~~~yd~vvlAtG~~~~~ 121 (483)
.++...++..++.+.+++..-.+..+..|.. .+.+. .....++.||||||. .|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~-~P~ 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG-QPR 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-----EE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC-CCC
Confidence 1234456667777777776543555555421 23331 112358999999996 455
Q ss_pred CCCCC-CCC-CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 122 ALGIP-GED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 122 ~~~ip-g~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
.|... ... .+.|+++.++...... ....++|+|||||.+|.|++..|.+
T Consensus 161 iP~~~~~~~~~~~v~Hss~~~~~~~~----------~~~~~~V~VVGgGQSAAEi~~~L~~------------------- 211 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFHSSEYLSRIDQ----------SLAGKRVAVVGGGQSAAEIFLDLLR------------------- 211 (341)
T ss_dssp --GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHH-------------------
T ss_pred CCcchhhcCCCCCEEEehHhhhcccc----------ccCCCeEEEECCcHhHHHHHHHHHh-------------------
Confidence 44322 222 2679999888755432 1267899999999999999999986
Q ss_pred cCCccEEEEEeecCccc----ccC-----CHHHHHHHhcCCC-eeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHH
Q 011535 200 GSSIRKVYLVGRRGPVQ----AAC-----TAKELREILGIKN-LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAA 269 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~----~~f-----~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~ 269 (483)
..+..+|+++.|+.... ++| +++-...+..+|. .+..+....-..+ .....+.+.+++.+.+.+..
T Consensus 212 ~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n----y~~i~~~~l~~iy~~lY~~~ 287 (341)
T PF13434_consen 212 RGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN----YGGIDPDLLEAIYDRLYEQR 287 (341)
T ss_dssp H-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT----SSEB-HHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc----CCCCCHHHHHHHHHHHHHHH
Confidence 22336899999997543 233 2332222222211 0000000000000 00000223333334433222
Q ss_pred HhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecC
Q 011535 270 ASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (483)
Q Consensus 270 ~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 345 (483)
. ..+..+.++.++.+..+... +++.+ .+.+.+ ..+++..++++|.||+||||+
T Consensus 288 v-------~g~~~~~l~~~~~v~~~~~~--~~~~~-~l~~~~-------------~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 288 V-------SGRGRLRLLPNTEVTSAEQD--GDGGV-RLTLRH-------------RQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp H-------HT---SEEETTEEEEEEEEE--S-SSE-EEEEEE-------------TTT--EEEEEESEEEE---EE
T ss_pred h-------cCCCCeEEeCCCEEEEEEEC--CCCEE-EEEEEE-------------CCCCCeEEEecCEEEEcCCcc
Confidence 1 11345778888888888731 23433 344433 125667899999999999996
No 88
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=1.4e-12 Score=126.05 Aligned_cols=336 Identities=15% Similarity=0.135 Sum_probs=180.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC---CCceeccc--------------CC-------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSGV--------------AP------------- 66 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~---ggl~~~g~--------------~p------------- 66 (483)
....+++.||-||+.|+.|..|.... +.++..+|+.|.+ .|++..|. .|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 35679999999999999999998875 4789999999852 33332220 01
Q ss_pred -----------CCCChHHHHHHHHHHHhcCCeEEEeCeEEce----------E--EEecce-eeccCEEEEccCCCCCCC
Q 011535 67 -----------DHPETKIVINQFSRVVQHERCSFFGNVTLGS----------S--VSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 67 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----------~--~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.++...+...+..+.+... -.+.++..|.. . +...+. ...+..|||++|.+...|
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 1223334444555555544 34455555531 0 111122 235788999999853333
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+-+.....+.+|++.++.+... ++...+.|.|||+|.+|.|+...|..... ..
T Consensus 161 ~~f~~l~~~~vfHss~~~~~~~----------~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~-----------------~~ 213 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLERHP----------ELLQKRSVTVIGSGQSAAEIFLDLLNSQP-----------------PQ 213 (436)
T ss_pred hHHhCcCccceeehHHHHHhhH----------HhhcCceEEEEcCCccHHHHHHHHHhCCC-----------------Cc
Confidence 3334444467999988774322 22133459999999999999999885211 01
Q ss_pred ccEEEEEeecCccc----ccCCHHHHHHHhcCCCeeEEecccccc-CCCCcH-HHh----------hccHHHHHHHHHHH
Q 011535 203 IRKVYLVGRRGPVQ----AACTAKELREILGIKNLYVHIREDDLI-KSPTDE-EEM----------KNSRIQRRVYELLS 266 (483)
Q Consensus 203 ~~~V~li~r~~~~~----~~f~~~el~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~----------~~~~~~~r~~~~l~ 266 (483)
-.++.+|.|+.... ++|+..-+ . ....+++ .++... .++ .......++.+.|.
T Consensus 214 ~~~l~witR~~gf~p~d~Skf~~e~F----~-------P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY 282 (436)
T COG3486 214 DYQLNWITRSSGFLPMDYSKFGLEYF----S-------PEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLY 282 (436)
T ss_pred CccceeeeccCCCCccccchhhhhhc----C-------chhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHH
Confidence 12588899985322 33332100 0 0000000 000000 000 01233334444444
Q ss_pred HHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 267 KAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.. -...+..+.++..+.+..+++.+ +|++ .+.+... .+++.+++++|.||+||||+.
T Consensus 283 ~~~------l~~~~~~v~l~~~~ev~~~~~~G--~g~~-~l~~~~~-------------~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 283 EQS------LGGRKPDVRLLSLSEVQSVEPAG--DGRY-RLTLRHH-------------ETGELETVETDAVILATGYRR 340 (436)
T ss_pred HHH------hcCCCCCeeeccccceeeeecCC--CceE-EEEEeec-------------cCCCceEEEeeEEEEeccccc
Confidence 331 23346778899999999998433 4542 3443331 267778999999999999994
Q ss_pred CCCCCCCccCCC--CcccCCCCeeeecCCCCCC---cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 347 VPVNGLPFDNHK--GIVPNIRGRVLKNISGDSS---QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 347 ~~~~~l~~~~~~--g~~~~~~G~v~v~~~~~~~---t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.. + .|++.. .+..+++|+..++.+.-.. ...-.||+.|=+-+ ..|+-..-..-+..=+..|++.|.+.
T Consensus 341 ~~-P--~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h-tHGig~pdLsl~a~Raa~I~~~L~g~ 413 (436)
T COG3486 341 AV-P--SFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH-THGIGAPDLSLGAWRAAVILNSLLGR 413 (436)
T ss_pred CC-c--hhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc-ccccCCccchHHHHHHHHHHHHHhCc
Confidence 32 1 122211 1233444554444431011 11235999996642 33333222333333344566666553
No 89
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.56 E-value=1.4e-14 Score=138.79 Aligned_cols=298 Identities=15% Similarity=0.184 Sum_probs=169.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CC-------CceecccCCC-----------------CCChH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PF-------GLVRSGVAPD-----------------HPETK 72 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~g-------gl~~~g~~p~-----------------~~~~~ 72 (483)
....-+|||+|.+.++++.......++..|.+|...|. || -+|.|+- |. +..++
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecCC
Confidence 34567999999999998887777767799999977654 22 2333322 11 00111
Q ss_pred HHHHHHHHH--HhcCCeEEEeCeEE------ceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeee
Q 011535 73 IVINQFSRV--VQHERCSFFGNVTL------GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWY 143 (483)
Q Consensus 73 ~~~~~~~~~--~~~~~v~~~~~~~v------~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~ 143 (483)
.+...-+++ ..+-|+-+..+..+ .+.+.+.++. ..||.++||||. .|+.+..-....+.+.. -..++
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~-~Pk~l~~~~~A~~evk~---kit~f 331 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGV-RPKKLQVFEEASEEVKQ---KITYF 331 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCc-CcccchhhhhcCHHhhh---heeEE
Confidence 111111111 22335555554433 1235666665 479999999999 57665542222111211 11111
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec-CcccccCCHH
Q 011535 144 NGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR-GPVQAACTAK 222 (483)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~-~~~~~~f~~~ 222 (483)
..-.++..+..-+..-++|.|||+|..|-|+|..|.+ ..+..+. +|+-+... .++.
T Consensus 332 r~p~DF~rlek~~aek~siTIiGnGflgSELacsl~r----------------k~r~~g~-eV~QvF~Ek~nm~------ 388 (659)
T KOG1346|consen 332 RYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKR----------------KYRNEGV-EVHQVFEEKYNME------ 388 (659)
T ss_pred ecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHH----------------hhhccCc-EEEEeecccCChh------
Confidence 1111222222222234789999999999999999986 1222333 44443322 2110
Q ss_pred HHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC
Q 011535 223 ELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG 302 (483)
Q Consensus 223 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g 302 (483)
.....-+.+.-.+.++ +.||.++.+..+..+. . ..+
T Consensus 389 ----------------------------kiLPeyls~wt~ekir-------------~~GV~V~pna~v~sv~--~-~~~ 424 (659)
T KOG1346|consen 389 ----------------------------KILPEYLSQWTIEKIR-------------KGGVDVRPNAKVESVR--K-CCK 424 (659)
T ss_pred ----------------------------hhhHHHHHHHHHHHHH-------------hcCceeccchhhhhhh--h-hcc
Confidence 0000111111223332 6789998888877775 2 122
Q ss_pred ceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCC-CeeeecCCCCCCcccC
Q 011535 303 HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIR-GRVLKNISGDSSQVEN 381 (483)
Q Consensus 303 ~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~-G~v~v~~~~~~~t~~p 381 (483)
++ .++ ..++.++..|+|+.|+|-.||. .+.+..|+..+++ |.+.++..+ ..-.
T Consensus 425 nl-~lk------------------L~dG~~l~tD~vVvavG~ePN~----ela~~sgLeiD~~lGGfrvnaeL---~ar~ 478 (659)
T KOG1346|consen 425 NL-VLK------------------LSDGSELRTDLVVVAVGEEPNS----ELAEASGLEIDEKLGGFRVNAEL---KARE 478 (659)
T ss_pred ce-EEE------------------ecCCCeeeeeeEEEEecCCCch----hhcccccceeecccCcEEeehee---eccc
Confidence 22 122 2233489999999999999988 5667888888865 666777654 3458
Q ss_pred ceeeeccCCCCCcchh--------HhhHHHHHHHHHHHHH
Q 011535 382 GLYVCGWLKRGPTGII--------ATNLYCAEETVASISE 413 (483)
Q Consensus 382 ~vya~Gd~~~g~~~~~--------~~a~~~g~~~a~~I~~ 413 (483)
|||++||++.-..++. .+|+-.|+.+.+|+..
T Consensus 479 NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 479 NVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred ceeeecchhhhhcccccceeccccccceeeceeccccccc
Confidence 9999999985333332 2566677777777654
No 90
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.53 E-value=3.8e-14 Score=128.21 Aligned_cols=171 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccC------CC--CCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA------PD--HPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~------p~--~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
+.+|||||.||.+||..|+...|..+|.|+..++..-....|.-. .+ .....++-..+++++.+ +.- .+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~--v~~-~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND--VVT-WD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh--hhh-hc
Confidence 368999999999999999999999999999887653222111100 00 00001111112222211 000 00
Q ss_pred eEEceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchH
Q 011535 93 VTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 93 ~~v~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g 171 (483)
+. ...+.++++. ..|++|++|||. .|.. ...|.+ +.+..-++-.. ..-+...+...|.|.|+|+|-++
T Consensus 78 s~-ehci~t~~g~~~ky~kKOG~tg~-kPkl-q~E~~n-~~Iv~irDtDs-------aQllq~kl~kaK~VlilgnGgia 146 (334)
T KOG2755|consen 78 SS-EHCIHTQNGEKLKYFKLCLCTGY-KPKL-QVEGIN-PKIVGIRDTDS-------AQLLQCKLVKAKIVLILGNGGIA 146 (334)
T ss_pred cc-cceEEecCCceeeEEEEEEecCC-Ccce-eecCCC-ceEEEEecCcH-------HHHHHHHHhhcceEEEEecCchh
Confidence 00 1123444443 469999999998 4443 223322 11221111100 00001123468999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHh
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~ 228 (483)
+|++.++.. -+|++......+...|..+...+++
T Consensus 147 ~El~yElk~-----------------------~nv~w~ikd~~IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 147 MELTYELKI-----------------------LNVTWKIKDEGISATFFDPGAAEFY 180 (334)
T ss_pred HHHHHHhhc-----------------------ceeEEEecchhhhhcccCccHHHHh
Confidence 999999864 3577777666666666665555444
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.48 E-value=1.3e-14 Score=133.31 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=61.8
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCC-CChHHHH--H--HHHHHHhcCCeEEEeC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDH-PETKIVI--N--QFSRVVQHERCSFFGN 92 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~-~~~~~~~--~--~~~~~~~~~~v~~~~~ 92 (483)
||+||||||||++||..|++.+ .+|+|+|+.+..+.. +........ ....... . .+.+.+...++++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--CeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 6999999999999999999888 999999887643221 110000000 0000111 0 2333334567777544
Q ss_pred eEE-ceEE----------E-----e-cceeeccCEEEEccCCCCCCCCCCCCC
Q 011535 93 VTL-GSSV----------S-----L-SELRQLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 93 ~~v-~~~~----------~-----~-~~~~~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
..+ ..+. . . ......||+||||||+ .++.+++||.
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~i~g~ 130 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS-RPRTPNIPGE 130 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE-EEEEESSTTT
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCcc-ccceeecCCC
Confidence 322 1110 0 1 1223469999999997 5777788886
No 92
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.39 E-value=1.2e-12 Score=121.76 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=82.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
++.|.+.+....++|. . +.+.. .|+.. + ..|..++++.+++-...-.++.. +...+.
T Consensus 248 ~rni~vn~krnLiEV~--~--~~~~A--vFe~L-------~-----kPG~t~ei~yslLHv~Ppms~pe-----~l~~s~ 304 (446)
T KOG3851|consen 248 ERNITVNYKRNLIEVR--T--NDRKA--VFENL-------D-----KPGVTEEIEYSLLHVTPPMSTPE-----VLANSD 304 (446)
T ss_pred hcceEeeeccceEEEe--c--cchhh--HHHhc-------C-----CCCceeEEeeeeeeccCCCCChh-----hhhcCc
Confidence 7889999999999997 4 33322 22221 0 13777899999999876665533 333333
Q ss_pred cccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc-hhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG-IIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~-~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
..+..|++-||....|++..|+||++|||.+.|.. ..+....|+..+-.||...+++...
T Consensus 305 -~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~p 365 (446)
T KOG3851|consen 305 -LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRP 365 (446)
T ss_pred -ccCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCc
Confidence 35678999888765477889999999999987653 3334567888899999999987643
No 93
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.37 E-value=2.2e-10 Score=113.87 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=36.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC-CCCeEEEEecCCCCCCceec
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~-~~~~v~lie~~~~~ggl~~~ 62 (483)
+++|+|||+|++|+++|.+|++.. ++..|.|||+.+..|.-+.|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 368999999999999999999986 44459999999887765444
No 94
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.29 E-value=1.1e-10 Score=118.12 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=73.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC-----------
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP----------- 348 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~----------- 348 (483)
+.|+.++++..+.++. . +++.+..+. .. .+....+++|.||+|+|..+..
T Consensus 271 ~~Gv~I~~g~~V~~v~--~-~~~~V~~v~-~~---------------~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~E 331 (422)
T PRK05329 271 RLGGRIMPGDEVLGAE--F-EGGRVTAVW-TR---------------NHGDIPLRARHFVLATGSFFSGGLVAERDGIRE 331 (422)
T ss_pred hCCCEEEeCCEEEEEE--E-eCCEEEEEE-ee---------------CCceEEEECCEEEEeCCCcccCceeccCCcccc
Confidence 6789999999999887 3 244443332 11 2344579999999999976432
Q ss_pred -CCCCCcc-------------------CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcch-----hHhhHHH
Q 011535 349 -VNGLPFD-------------------NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI-----IATNLYC 403 (483)
Q Consensus 349 -~~~l~~~-------------------~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~-----~~~a~~~ 403 (483)
+.+++.. ...|+.+|+.-+++ +.. ..+..+||||+|++..|...+ .+.|+..
T Consensus 332 pif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~-~~~--g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~t 408 (422)
T PRK05329 332 PIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPL-DSQ--GGPVIENLYAAGAVLGGYDPIREGCGSGVALAT 408 (422)
T ss_pred ccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcc-cCC--CCeeccceEEeeehhcCCchHHhCCCchhHHHH
Confidence 1122110 24566666654433 222 456789999999998765432 1358899
Q ss_pred HHHHHHHHHHHH
Q 011535 404 AEETVASISEDL 415 (483)
Q Consensus 404 g~~~a~~I~~~l 415 (483)
|..++++|.+..
T Consensus 409 a~~a~~~~~~~~ 420 (422)
T PRK05329 409 ALHAAEQIAEEA 420 (422)
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 95
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.28 E-value=3.8e-12 Score=129.45 Aligned_cols=418 Identities=25% Similarity=0.262 Sum_probs=238.2
Q ss_pred CCeEEEECccH-HHHHHHHHHHhcCC--CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~-aGl~aA~~l~~~~~--~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..+.+++|.++ ++++.|.++...++ ...+-+.+.-|.+.+++++|. .|+..+.+...+.--.-..++-+..+...
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~g~--~~~a~~~i~~tn~~p~~~gRvcp~~~~ce 82 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKLIHKTNNLPAITGRVCPLGNLCE 82 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCCccccCCcCCCcCCCHHHHHhcCC--cHHHHHHHHHhCCCccccCccCCCCCcee
Confidence 57899999999 99999999999872 113555666677788888776 33333333222211111123444444455
Q ss_pred ceEEEe-cceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHH
Q 011535 96 GSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174 (483)
Q Consensus 96 ~~~~~~-~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~ 174 (483)
+..+.. .+....|+.|..++|....+...+++. .++.. .+++|+|||+|+.|+.+
T Consensus 83 g~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~~~-----------------------tg~~VaviGaGPAGl~~ 138 (457)
T COG0493 83 GACVLGIEELPVNIGALERAIGDKADREGWIPGE-LPGSR-----------------------TGKKVAVIGAGPAGLAA 138 (457)
T ss_pred eeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCC-CCCCC-----------------------CCCEEEEECCCchHhhh
Confidence 544443 445567888888888744444444443 22111 46899999999999999
Q ss_pred HHHHhcCCc---------------------cccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcC---
Q 011535 175 ARILLRPTE---------------------ELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI--- 230 (483)
Q Consensus 175 A~~L~~~~~---------------------~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~--- 230 (483)
|..|++... .+.++||.+..++.|+..| .++.+..+.+. .++.++|++.+..
T Consensus 139 a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G-v~~~~~~~vG~---~it~~~L~~e~Dav~l 214 (457)
T COG0493 139 ADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG-VEFKLNVRVGR---DITLEELLKEYDAVFL 214 (457)
T ss_pred HHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC-eEEEEcceECC---cCCHHHHHHhhCEEEE
Confidence 999887332 2356899999999999999 78888888874 4567777666521
Q ss_pred CCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEe
Q 011535 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~ 310 (483)
..-....+...+.-.....-....+.+.+...+.+..... ........++-|.+-++..+.++. . .....+.+..
T Consensus 215 ~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~-~~~~~~~gk~vvVIGgG~Ta~D~~--~--t~~r~Ga~~v 289 (457)
T COG0493 215 ATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAE-DRTPPAKGKRVVVIGGGDTAMDCA--G--TALRLGAKSV 289 (457)
T ss_pred eccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhccccc-ccCCCCCCCeEEEECCCCCHHHHH--H--HHhhcCCeEE
Confidence 1111111111111111101111111222111122221110 001111224455555666655554 2 1111112111
Q ss_pred eeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCC
Q 011535 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (483)
Q Consensus 311 ~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~ 390 (483)
......+.. ..+....+++....+-..++...+ ..++....++..|++|+|..... ....++-|..||..
T Consensus 290 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~eeg~~--~~~~~~~~~~~~~e~GrV~~~~~---~~~~~~~~~~~~~r 359 (457)
T COG0493 290 TCFYREDRD-----DETNEWPTWAAQLEVRSAGEEGVE--RLPFVQPKAFIGNEGGRVTGVKF---GRVEPGEYVDGWGR 359 (457)
T ss_pred EEecccccc-----ccCCcccccchhhhhhhhhhcCCc--ccccCCceeEeecCCCcEeeeec---ccccccCccccccc
Confidence 111000000 012333467888889899988743 44677778888899999985542 23457889999999
Q ss_pred CCCcchhHhhHHHHHHHHHHHHHHHhcCcC---CCC-CCCCCCChhhHHHHHhcCCCcccchhhHHhhh-HHHHHccccC
Q 011535 391 RGPTGIIATNLYCAEETVASISEDLEQGVL---ASS-SGLPKPGREGLLQLLDNRNVRPVPFSAWEKID-SEEKRLGSLR 465 (483)
Q Consensus 391 ~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id-~~e~~~g~~~ 465 (483)
.+|.++.+........++..+......... ... ......+...+........+.. .|.+|..++ +.|+-.|...
T Consensus 360 ~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~-vfa~gD~~~g~~~vv~ai~e 438 (457)
T COG0493 360 RGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPG-VFAGGDAVRGAALVVWAIAE 438 (457)
T ss_pred ccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCC-eeeCceeccchhhhhhHHhh
Confidence 999888765555555555444442211100 000 0001112222333332445555 999999999 9999999999
Q ss_pred CCCcccccCHHHHHhhh
Q 011535 466 NKPKEKLTTYEDLLKVA 482 (483)
Q Consensus 466 ~~~r~k~~~~~~~~~~~ 482 (483)
||.+.|+++.+.|+..+
T Consensus 439 Gr~aak~i~~~~l~~~~ 455 (457)
T COG0493 439 GREAAKAIDKELLLGKA 455 (457)
T ss_pred chHHHHhhhHHHHhhcc
Confidence 99999999999998653
No 96
>PRK09897 hypothetical protein; Provisional
Probab=99.13 E-value=2.7e-09 Score=111.10 Aligned_cols=182 Identities=13% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---------------CCC----------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---------------APD---------------- 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---------------~p~---------------- 67 (483)
+++|+||||||+|+++|.+|.+....++|+|||+++.+|.-+.|.. +|.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 3689999999999999999998765689999999877763221110 000
Q ss_pred ---------------CCCh-------HHHHHHHHHHHhcCC--eEEEeCeEEce--------EEEecc--eeeccCEEEE
Q 011535 68 ---------------HPET-------KIVINQFSRVVQHER--CSFFGNVTLGS--------SVSLSE--LRQLYHVVVL 113 (483)
Q Consensus 68 ---------------~~~~-------~~~~~~~~~~~~~~~--v~~~~~~~v~~--------~~~~~~--~~~~yd~vvl 113 (483)
+... .++...+.+.+...| +.++.+..|.. .+++.+ ....+|.||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0000 011111222223334 56665544321 233322 1246999999
Q ss_pred ccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchH
Q 011535 114 AYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193 (483)
Q Consensus 114 AtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~ 193 (483)
|||...+..+ ++. ++.+ ... ++ ....... .+.+|+|+|.|.+++|++..|......|..++=...
T Consensus 161 AtGh~~p~~~--~~~--~~yi-~~p-------w~--~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~ 225 (534)
T PRK09897 161 ATGHVWPDEE--EAT--RTYF-PSP-------WS--GLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHV 225 (534)
T ss_pred CCCCCCCCCC--hhh--cccc-CCC-------Cc--chhhcCC-CCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcc
Confidence 9997433221 111 1111 111 11 0111122 368999999999999999999864333433221111
Q ss_pred HHHHHhcCCccEEEEEeecCcc
Q 011535 194 AWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 194 ~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.+.........+|++++|++..
T Consensus 226 ~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 226 VFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred eeeecCCCCCceEEEEeCCCCC
Confidence 1111111233589999999863
No 97
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.90 E-value=1.8e-08 Score=98.10 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=73.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee------------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR------------------------------------ 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~------------------------------------ 61 (483)
..++|+|||||||||.||..+++.+ .+|+|||+.+.+|--++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 4579999999999999999999999 99999999987642110
Q ss_pred -----------cc----------cCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--------eEEEecce-eeccCEE
Q 011535 62 -----------SG----------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL-RQLYHVV 111 (483)
Q Consensus 62 -----------~g----------~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~--------~~~~~~~~-~~~yd~v 111 (483)
+| +.|.-.....+++.+...++..|++++.++.+. ..+++.++ ...+|.|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 11 223323445677777778888899999988763 23455566 4679999
Q ss_pred EEccCC
Q 011535 112 VLAYGA 117 (483)
Q Consensus 112 vlAtG~ 117 (483)
|||||.
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999996
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.81 E-value=2e-08 Score=101.45 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=56.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-----------e---------e------------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-----------V---------R------------------ 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-----------~---------~------------------ 61 (483)
++|+|||||||||.||..|++.+ .+|+|+|+++.+|-- . .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 58999999999999999999999 999999999765410 0 0
Q ss_pred ----------cc----------cCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce---------EEEe-cceeeccCEE
Q 011535 62 ----------SG----------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSL-SELRQLYHVV 111 (483)
Q Consensus 62 ----------~g----------~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~---------~~~~-~~~~~~yd~v 111 (483)
.| +.|......++.+.+.+.+++.++++++++.+.. .+.. ......+|.|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 01 1122123345667777778888999999887632 2344 3334569999
Q ss_pred EEccCCC
Q 011535 112 VLAYGAE 118 (483)
Q Consensus 112 vlAtG~~ 118 (483)
|||||..
T Consensus 159 ILAtGG~ 165 (409)
T PF03486_consen 159 ILATGGK 165 (409)
T ss_dssp EE----S
T ss_pred EEecCCC
Confidence 9999974
No 99
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.79 E-value=1.8e-06 Score=86.73 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|++|+++|..+.+.+ .+|.|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g--~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 47999999999999999999998 9999999874
No 100
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.74 E-value=8.5e-08 Score=91.22 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=60.3
Q ss_pred hhhhhhhhhccC-CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------------------
Q 011535 4 ARAWLSRSFTAL-SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-------------------- 62 (483)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-------------------- 62 (483)
++..+.+++... .....+|+||||||||++||++|++.+ ++|+|+|+.+.++|.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~ 86 (257)
T PRK04176 9 TRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDE 86 (257)
T ss_pred HHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCCccccCccccccccchHHHHHHHHH
Confidence 344444444332 234579999999999999999999998 999999999887653211
Q ss_pred -cc-----CCCC--CChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 63 -GV-----APDH--PETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 63 -g~-----~p~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++ .+++ ....++...+.+.+...|++++.++.+
T Consensus 87 ~gv~~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V 127 (257)
T PRK04176 87 FGIRYKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSV 127 (257)
T ss_pred CCCCceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCcee
Confidence 11 0111 123345556666777788998888665
No 101
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=1.5e-07 Score=72.48 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=56.4
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+++|||+|++|+|+|..|.+ .+ .+|+++.|++.+...+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--------------------~g-~~vtli~~~~~~~~~~~-------------------- 39 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--------------------LG-KEVTLIERSDRLLPGFD-------------------- 39 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TT-SEEEEEESSSSSSTTSS--------------------
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------hC-cEEEEEeccchhhhhcC--------------------
Confidence 68999999999999999986 34 68999999987652222
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEee
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~ 311 (483)
+...+.+.+.+. ++||+++++..+.++. .++++ +. |++++
T Consensus 40 --------------~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 40 --------------PDAAKILEEYLR-------------KRGVEVHTNTKVKEIE--KDGDG-VE-VTLED 79 (80)
T ss_dssp --------------HHHHHHHHHHHH-------------HTTEEEEESEEEEEEE--EETTS-EE-EEEET
T ss_pred --------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE--EeCCE-EE-EEEec
Confidence 122222333443 6799999999999998 42344 66 76653
No 102
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.58 E-value=3.9e-07 Score=86.40 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=41.5
Q ss_pred hhhhhhhhhccC-CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 4 ARAWLSRSFTAL-SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|..+.+.+... .....+|+||||||||++||+.|++.+ .+|+|+|+++.+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Gg 58 (254)
T TIGR00292 5 SRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGG 58 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 344444443332 234689999999999999999999999 99999999988754
No 103
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.8e-07 Score=82.29 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...+|+||||||+||+||++|++.+ ++|+|||++-.+||-+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCccc
Confidence 4579999999999999999999999 99999999988876544
No 104
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.51 E-value=7.7e-07 Score=80.07 Aligned_cols=44 Identities=36% Similarity=0.487 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g 63 (483)
...+|+|||||||||+||++|++.+ ++|.+||++..+||.+..|
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~~G 59 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMWGG 59 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTTS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCcccccc
Confidence 4579999999999999999999999 9999999998887755433
No 105
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.49 E-value=1.1e-06 Score=89.51 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=67.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-c---------cCCCCC------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---------VAPDHP------------------ 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g---------~~p~~~------------------ 69 (483)
..++|+||||||||.+||+.|++.| ++|+|+|+.+.+|..... + +.|...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 4689999999999999999999999 999999998776532111 0 011110
Q ss_pred -------------ChHHHHHHHHHHHhcCCeEEEeCeEEceEEEec--------c--eeeccCEEEEccCCC
Q 011535 70 -------------ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLS--------E--LRQLYHVVVLAYGAE 118 (483)
Q Consensus 70 -------------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~--------~--~~~~yd~vvlAtG~~ 118 (483)
....+...+.+.+.+.|.+++.++.+....... . ....+++||.|+|+.
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 012333445666777888888887764322211 1 134699999999974
No 106
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.44 E-value=6.6e-07 Score=95.41 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||+|+||++||..+++++ .+|+|+||.+..||..
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcc
Confidence 3579999999999999999999999 9999999998877653
No 107
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.43 E-value=3.4e-07 Score=67.94 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.6
Q ss_pred EECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 24 IIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
|||||++||++|..|++.+ .+|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeE
Confidence 8999999999999999998 999999999999987653
No 108
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.42 E-value=1.5e-06 Score=84.36 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=64.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-------------------------------c---cC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-------------------------------G---VA 65 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-------------------------------g---~~ 65 (483)
++|+||||||||+++|..|++.+ .+|+|||+.+.+...... + ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 47999999999999999999998 999999999764321100 0 00
Q ss_pred CC------CCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecc--eeeccCEEEEccCCC
Q 011535 66 PD------HPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE--LRQLYHVVVLAYGAE 118 (483)
Q Consensus 66 p~------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~--~~~~yd~vvlAtG~~ 118 (483)
+. ......+...+.+.+...+++++.++.+.. .+.+.+ ....+|+||+|+|..
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 00 011234555666777777899888766532 122222 234689999999974
No 109
>PLN02463 lycopene beta cyclase
Probab=98.41 E-value=4.8e-06 Score=85.57 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-----CCcee-----ccc-------CCC------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-----FGLVR-----SGV-------APD------------ 67 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-----ggl~~-----~g~-------~p~------------ 67 (483)
....+|+||||||||+++|..|++.| ++|+|||+.+.. ++.+. .++ .+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~G--l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAG--LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCC--CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 34579999999999999999999998 999999987531 22110 000 000
Q ss_pred ----C--CChHHHHHHHHHHHhcCCeEEEeCeEEc-------eEEEecce-eeccCEEEEccCCC
Q 011535 68 ----H--PETKIVINQFSRVVQHERCSFFGNVTLG-------SSVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 68 ----~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~-------~~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
+ ...+++...+.+.+...+++++...+.. ..++++++ ...+|.||.|+|..
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 0 1223444556666666788886443221 12444454 35799999999984
No 110
>PLN02661 Putative thiazole synthesis
Probab=98.41 E-value=2.8e-06 Score=83.17 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=35.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||||+||+.||+.|++. ++.+|+|||+...+||
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccccc
Confidence 357999999999999999999976 2399999999988765
No 111
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.39 E-value=4.7e-06 Score=64.15 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=54.2
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
+|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. +. ...++...+.+.+++.|++++.++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDRLL--------PG--FDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSSSS--------TT--SSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccchhh--------hh--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 6899999999999999999999 9999999998753 11 2235667778888888999999988743
No 112
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.34 E-value=3.3e-05 Score=73.26 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=31.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+.+|+|||||.||++|+++|++.| .++.||.+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCC
Confidence 578999999999999999999999 999999876
No 113
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.32 E-value=2.9e-05 Score=73.91 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=110.7
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccC-------C----HHHHHHHh
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC-------T----AKELREIL 228 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f-------~----~~el~~~~ 228 (483)
-+|+|||+|++|+-+|..|++ .+ .+|.++.++......+ . ..+..+++
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~--------------------~G-~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l 84 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAK--------------------AG-LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEIL 84 (257)
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CC-CeEEEEecCCCCCCccccCccccccccchHHHHHHH
Confidence 479999999999999999986 34 4689999875432211 0 11222222
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEE
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~ 308 (483)
.--++.+......+... . ...+...|.+.+. +.|+++++++.+..+. .++++++.++.
T Consensus 85 ~~~gv~~~~~~~g~~~v---------d--~~~l~~~L~~~A~---------~~Gv~I~~~t~V~dl~--~~~~g~V~Gvv 142 (257)
T PRK04176 85 DEFGIRYKEVEDGLYVA---------D--SVEAAAKLAAAAI---------DAGAKIFNGVSVEDVI--LREDPRVAGVV 142 (257)
T ss_pred HHCCCCceeecCcceec---------c--HHHHHHHHHHHHH---------HcCCEEEcCceeceee--EeCCCcEEEEE
Confidence 21122222111110000 0 1233344444443 5689999999998886 31244777776
Q ss_pred EeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC---------CCCCccCCCCcccCCCCeeeecCCCCCCcc
Q 011535 309 FEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV---------NGLPFDNHKGIVPNIRGRVLKNISGDSSQV 379 (483)
Q Consensus 309 ~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~---------~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~ 379 (483)
........ .+. ..+..++.|+.||.|+|...... .............+.....+++. ...-
T Consensus 143 ~~~~~v~~--~g~-----~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~---t~~~ 212 (257)
T PRK04176 143 INWTPVEM--AGL-----HVDPLTIEAKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVEN---TGEV 212 (257)
T ss_pred Eccccccc--cCC-----CCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhc---CCeE
Confidence 54311100 010 12335899999999999654221 00001111122222222333333 2346
Q ss_pred cCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHHhc
Q 011535 380 ENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 380 ~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
+||+|++|-.++ +| .| +++.=.-.|+.+|+-|++.|..
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 899999998763 22 23 3332356899999999988764
No 114
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.30 E-value=4.7e-06 Score=85.66 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|+||||||||++||..|+++| ++|+|+|+.+.++
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence 4589999999999999999999999 9999999987653
No 115
>PRK10015 oxidoreductase; Provisional
Probab=98.27 E-value=7.8e-06 Score=84.00 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=34.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+||||||||++||+.|++.| ++|+|||+.+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCC
Confidence 4589999999999999999999999 999999998764
No 116
>PRK06847 hypothetical protein; Provisional
Probab=98.26 E-value=9.8e-06 Score=81.86 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+||||||||+++|..|.+.+ ++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 3579999999999999999999999 99999998864
No 117
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.20 E-value=9.4e-06 Score=82.43 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=61.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc------------------------C-CCC-------
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------------------------A-PDH------- 68 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~------------------------~-p~~------- 68 (483)
+|+||||||||+++|..|++.+ .+|+|||+.+..++...+++ . +..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 6999999999999999999998 99999999875443211110 0 110
Q ss_pred ---CChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce-eeccCEEEEccCCC
Q 011535 69 ---PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.....+...+.+.+...+++++.+..... .++..++ ...++.||.|+|..
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCc
Confidence 11233445555556666777765543321 1233333 34699999999984
No 118
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.20 E-value=1.1e-05 Score=82.05 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred EEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 23 CVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 23 vIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|||||+|||+||..|++.+ .+|+|+|+++.+|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccc
Confidence 69999999999999999998 99999999987654
No 119
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.17 E-value=4.4e-05 Score=76.61 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|+|||+|.|||++|+.|.+. .+|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCC
Confidence 899999999999999999887 89999998864
No 120
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.17 E-value=1.9e-05 Score=80.71 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.-+++++|||||+.|+..|..+.+.| .+|||+|+.+.+ .|. ...++...+.+.++..+++++.++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--~~VTiie~~~~i--------Lp~--~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRI--------LPG--EDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCC--------CCc--CCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 46789999999999999999999999 999999999874 243 345777888888888789999998763
Q ss_pred eE--------EEeccee---eccCEEEEccCCCCCCC
Q 011535 97 SS--------VSLSELR---QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 97 ~~--------~~~~~~~---~~yd~vvlAtG~~~~~~ 122 (483)
.. +.++++. ..+|.|++|+|. .|+.
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR-~Pn~ 274 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR-KPNT 274 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCC-ccCC
Confidence 21 3333332 359999999997 4544
No 121
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.13 E-value=7.5e-05 Score=77.70 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.++..+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLG--SKVTVIEMLDRIL--------PG--EDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCCCC--------CC--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4579999999999999999999998 9999999987642 22 1234556667777778999998876531
Q ss_pred ------E--EEecce---eeccCEEEEccCCCCCCC
Q 011535 98 ------S--VSLSEL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ------~--~~~~~~---~~~yd~vvlAtG~~~~~~ 122 (483)
. +...++ ...+|.||+|+|. .|..
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~-~p~~ 271 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGR-KPNT 271 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCC-cccC
Confidence 1 222223 3469999999998 3443
No 122
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.11 E-value=3.5e-06 Score=85.33 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=40.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||.|||+||++|.+.+|+++|+|||+++..||+++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5899999999999999999999999999999999999998764
No 123
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.11 E-value=1.2e-05 Score=85.32 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
...+|+|||+|++|+++|..+++.+ .+|+|||+.+.+||.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G--~~v~llEk~~~~gG~ 45 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRG--LSTVVVEKAPHYGGS 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCcc
Confidence 4579999999999999999999999 999999999877653
No 124
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.09 E-value=3.4e-05 Score=79.73 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|++.+ .+|+||++.+.+. |.. ..++...+.+.++..|++++.+..+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLG--SKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 4679999999999999999999998 9999999987642 221 234555566777778999998865522
Q ss_pred ------E--EEecceeeccCEEEEccCCCCCC
Q 011535 98 ------S--VSLSELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 98 ------~--~~~~~~~~~yd~vvlAtG~~~~~ 121 (483)
. +..+.....||.||+|+|. .|.
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~-~p~ 254 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGR-KPN 254 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCC-CCC
Confidence 1 1122223469999999998 344
No 125
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.06 E-value=1.6e-05 Score=87.50 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||||+++|..|++.+++++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 489999999999999999999855599999999875
No 126
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.04 E-value=3.4e-05 Score=78.55 Aligned_cols=34 Identities=47% Similarity=0.653 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||||++||..|++.| ++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCC
Confidence 48999999999999999999999 99999998743
No 127
>PRK06834 hypothetical protein; Provisional
Probab=98.04 E-value=4.5e-05 Score=79.72 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+..+|+||||||+|+.+|..|++.| ++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G--~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 4579999999999999999999999 99999998864
No 128
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.03 E-value=5e-05 Score=77.12 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|+||||||||+++|+.|++.| ++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 48999999999999999999999 999999997
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.03 E-value=3.1e-05 Score=78.56 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+||||||||+++|..|++.| ++|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 468999999999999999999998 999999998664
No 130
>PRK06184 hypothetical protein; Provisional
Probab=98.02 E-value=4.4e-05 Score=80.35 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+||||||+||++|..|+++| ++|+|||+.+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence 578999999999999999999999 999999998643
No 131
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1.3e-05 Score=81.20 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=40.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p 66 (483)
+||+|+|||.|||+||+.|+++| ++|+|+|..+.+||.......+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s~~~~ 45 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVASWRDS 45 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCceeeeeecC
Confidence 58999999999999999999999 9999999999999987655433
No 132
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.99 E-value=8.4e-06 Score=84.47 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=38.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||+|||+||..|.+.|++++|+|+|+++.+||..+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 5799999999999999999998766899999999999997653
No 133
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.99 E-value=6.7e-05 Score=78.29 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~ 246 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFG--VEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLG 246 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEE
Confidence 3589999999999999999999998 9999999887641 321 234556677777788999998875522
Q ss_pred E----------EEecce---eeccCEEEEccCCC
Q 011535 98 S----------VSLSEL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~----------~~~~~~---~~~yd~vvlAtG~~ 118 (483)
. +...++ ...||.||+|+|..
T Consensus 247 i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred EEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 1 111122 24689999999983
No 134
>PLN02697 lycopene epsilon cyclase
Probab=97.97 E-value=7e-05 Score=78.38 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+||||||||+++|..|++.| ++|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G--l~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG--LNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEecCc
Confidence 3579999999999999999999998 999999975
No 135
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.96 E-value=6.6e-05 Score=78.92 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+||||||||+.||..+++.| .+|.|||+++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G--~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcC--CcEEEEeccc
Confidence 3589999999999999999999999 9999999984
No 136
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.95 E-value=7e-05 Score=75.75 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=66.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +.. ....+...+.+.+++.|++++.+..+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAG--KAVTLVDNAASLL--------ASL-MPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCccc--------chh-CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4579999999999999999999998 9999999887642 111 1234556667777788999998766532
Q ss_pred --------EEEeccee-eccCEEEEccCCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 13333332 4699999999983
No 137
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=9.8e-05 Score=76.70 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=67.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++++|||||++|+.+|..+.+.+ .+|+|+++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~ll--------~~--~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLG--TKVTIVEMAPQLL--------PG--EDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------cc--ccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4579999999999999999999998 9999999887642 22 1235666677777778999999876532
Q ss_pred ------EEEec-ce---eeccCEEEEccCCCCCCC
Q 011535 98 ------SVSLS-EL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ------~~~~~-~~---~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+. ++ ...||.|++|+|. .|+.
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~-~p~~ 270 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGR-KPRV 270 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCC-ccCC
Confidence 12221 11 2469999999997 3443
No 138
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=0.00032 Score=73.24 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=66.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+||++.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLG--AEVTILEALPAFL--------AAA--DEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCccC--------CcC--CHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 4589999999999999999999998 9999999987542 221 234556666667778999998865521
Q ss_pred --------EEEecc-----eeeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSE-----LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~-----~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.+ ....+|.|++|+|. .|..
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~-~p~~ 286 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR-VPNT 286 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC-ccCC
Confidence 122222 12469999999998 4443
No 139
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.94 E-value=0.00024 Score=75.95 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
...+|+|||+|++|+++|..+++++ .+|+|||+.+..||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCcc
Confidence 4679999999999999999999999 999999998876664
No 140
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=8.9e-05 Score=77.18 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..+++++.+..+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLG--AEVTIVEALPRIL--------PG--EDKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4579999999999999999999998 9999999987642 22 1235556677777788999999875521
Q ss_pred --------EEEecce----eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL----RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~----~~~yd~vvlAtG~~ 118 (483)
.+...+. ...+|.||+|+|..
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 1222222 24699999999983
No 141
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.93 E-value=0.00023 Score=67.62 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=105.7
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc-------CC----HHHHHHHh
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------CT----AKELREIL 228 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~-------f~----~~el~~~~ 228 (483)
-+|+|||+|++|+-+|..|++ .+ .+|.++.|+...... |. ..+..+++
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~--------------------~G-~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l 80 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK--------------------NG-LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL 80 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence 469999999999999999986 44 479999988643211 11 01112222
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC--ceEE
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSG 306 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g--~v~~ 306 (483)
+.-++.+......+.. .. +..+.+.|.+.+. +.|+++++++.+.++. . +++ ++.+
T Consensus 81 ~~~gi~~~~~~~g~~~---------~~--~~el~~~L~~~a~---------e~GV~I~~~t~V~dli--~-~~~~~~V~G 137 (254)
T TIGR00292 81 DEFGIRYEDEGDGYVV---------AD--SAEFISTLASKAL---------QAGAKIFNGTSVEDLI--T-RDDTVGVAG 137 (254)
T ss_pred HHCCCCeeeccCceEE---------ee--HHHHHHHHHHHHH---------HcCCEEECCcEEEEEE--E-eCCCCceEE
Confidence 2112222111110000 00 1123344444433 5689999999999887 3 234 5777
Q ss_pred EEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC----CCCcc-------CCCCcccCCCCeeeecCCCC
Q 011535 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN----GLPFD-------NHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 307 v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~----~l~~~-------~~~g~~~~~~G~v~v~~~~~ 375 (483)
+......... .|. ..+..++++++||.|||....-.. .+++. ....+..+..-..+++.
T Consensus 138 Vv~~~~~v~~--~g~-----~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~--- 207 (254)
T TIGR00292 138 VVINWSAIEL--AGL-----HVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHEN--- 207 (254)
T ss_pred EEeCCccccc--cCC-----CCCCEEEEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhc---
Confidence 7664311100 010 112458999999999997642100 00000 00011111111112222
Q ss_pred CCcccCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDL 415 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l 415 (483)
...-+||+|++|-.++ .| .| +++.=+-.|+.+|+.|++.|
T Consensus 208 t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 208 TREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 2346899999998763 12 23 33323568889999888876
No 142
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.92 E-value=7.2e-05 Score=76.20 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+.+.. ....+...+.+.++..|++++.++.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--CKVTVIELAATVMGRN---------APPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCcchhhh---------cCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 3579999999999999999999998 9999999887643210 1224555666777778999998876532
Q ss_pred -------EEEeccee-eccCEEEEccCCC
Q 011535 98 -------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 -------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCCC
Confidence 12333332 4699999999984
No 143
>PRK08244 hypothetical protein; Provisional
Probab=97.91 E-value=0.0001 Score=77.38 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 368999999999999999999999 99999999864
No 144
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.91 E-value=0.00011 Score=76.57 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++|+|||+|++|+.+|..|.+.+ .+|+++++.+.+. |.. ..++...+.+.++..+++++.++.+..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG--SEVTILQRSDRLL--------PRE--EPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCcCC--------Ccc--CHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 589999999999999999999999 9999999987642 221 234556677777778999999875521
Q ss_pred -------EEEecc----eeeccCEEEEccCCCCCCC
Q 011535 98 -------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~~~----~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.. ....+|.||+|+|. .|..
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~-~p~~ 268 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGR-RPNT 268 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECC-CcCC
Confidence 122211 23469999999998 3443
No 145
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.91 E-value=1.4e-05 Score=83.57 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||.||..|+++| ++|+|+|++..+||-.+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceE
Confidence 4589999999999999999999999 99999999999999654
No 146
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.90 E-value=0.00011 Score=73.29 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=31.6
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+||+|++|++ +|-.|.. .|+.||..++.|++..+.+.
T Consensus 354 ~~~~lf~AGqi-~G~~Gy~-eaaa~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 354 KIPGLFFAGQI-NGTEGYE-EAAAQGLIAGINAARRLQGK 391 (392)
T ss_dssp SSBTEEE-GGG-GTB-SHH-HHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCceECCCC-cchhHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 48999999999 5668877 79999999999999998764
No 147
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=1.5e-05 Score=82.66 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
.....++|+|||||.|||+||.+|...| ++|+|+|....+||-+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeEE
Confidence 3456789999999999999999999999 999999999999986543
No 148
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.88 E-value=8.4e-05 Score=76.75 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.+++.|++++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l~--------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG--LHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CcEEEEecccccc--------hh--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 579999999999999999999998 9999999887542 11 1235556677778888999998876632
Q ss_pred ---EEEecce-eeccCEEEEccCCC
Q 011535 98 ---SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ---~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.|++|+|..
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCCC
Confidence 2344333 24699999999983
No 149
>PRK07208 hypothetical protein; Provisional
Probab=97.87 E-value=1.8e-05 Score=82.69 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||..|.+++ ++|+|+|+.+.+||.++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceee
Confidence 4678999999999999999999998 99999999999999764
No 150
>PRK06370 mercuric reductase; Validated
Probab=97.85 E-value=0.00016 Score=75.22 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFG--SEVTVIERGPRLL--------PR--EDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCCC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4589999999999999999999998 9999999987643 22 1234556677777888999998865521
Q ss_pred --------EEEec---c-eeeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLS---E-LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~---~-~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+. + ....+|.||+|+|. .|+.
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~-~pn~ 273 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGR-VPNT 273 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCC-CcCC
Confidence 12221 1 13469999999998 3443
No 151
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.84 E-value=0.00016 Score=63.40 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=29.6
Q ss_pred EEECccHHHHHHHHHHHhcC---CCCeEEEEecCCC
Q 011535 23 CVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPT 55 (483)
Q Consensus 23 vIIG~G~aGl~aA~~l~~~~---~~~~v~lie~~~~ 55 (483)
+|||+||+|++++.+|.+.. +..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999999983 5699999999765
No 152
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.84 E-value=0.00014 Score=75.19 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gI~v~~~~~v~~ 216 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLG--KNVRIIQLEDRIL--------PDS-FDKEITDVMEEELRENGVELHLNEFVKS 216 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEeCCcccC--------chh-cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3579999999999999999999998 8999999876532 110 1245666777788888999998876632
Q ss_pred E--------EEecceeeccCEEEEccCCC
Q 011535 98 S--------VSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~--------~~~~~~~~~yd~vvlAtG~~ 118 (483)
. +..++....+|.|++|+|..
T Consensus 217 i~~~~~~~~v~~~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 217 LIGEDKVEGVVTDKGEYEADVVIVATGVK 245 (444)
T ss_pred EecCCcEEEEEeCCCEEEcCEEEECcCCC
Confidence 1 22233345799999999973
No 153
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.83 E-value=2.6e-05 Score=76.50 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=42.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
..++|+|+|||.+||++|++|++++|+..|+|||..++.||.++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 468999999999999999999999999999999999999998876
No 154
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.83 E-value=0.00018 Score=74.36 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.+++.|++++.+..+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFG--SKVTILEAASLFL--------PRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCC--------CCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4579999999999999999999998 9999999876531 332 234556677778888999998876532
Q ss_pred --------EEEecceeeccCEEEEccCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+...+....+|.|++|+|..
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~~ 253 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGRQ 253 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecCC
Confidence 122223345699999999983
No 155
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.82 E-value=0.00016 Score=74.51 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+.. +. ...++...+.+.++..|++++.+..+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRSERILN-------KL--FDEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccCc-------cc--cCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3579999999999999999999998 99999998875411 11 1234556677777888999998876532
Q ss_pred E------EEecce-eeccCEEEEccCCC
Q 011535 98 S------VSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~------~~~~~~-~~~yd~vvlAtG~~ 118 (483)
. +.+.++ ...||.||+|+|..
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCcc
Confidence 1 122222 34699999999983
No 156
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.82 E-value=0.00018 Score=74.57 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +.+ ..++...+.+.++..|++++.++.+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~gI~i~~~~~v~~ 232 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLG--SETHLVIRHERVL--------RSF--DSMISETITEEYEKEGINVHKLSKPVK 232 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------ccc--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 3589999999999999999999999 9999999887642 221 234556677777788999998865421
Q ss_pred ---------EEEecce--eeccCEEEEccCCCCCCC
Q 011535 98 ---------SVSLSEL--RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ---------~~~~~~~--~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|+.
T Consensus 233 i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~-~pn~ 267 (450)
T TIGR01421 233 VEKTVEGKLVIHFEDGKSIDDVDELIWAIGR-KPNT 267 (450)
T ss_pred EEEeCCceEEEEECCCcEEEEcCEEEEeeCC-CcCc
Confidence 1223333 2469999999998 3443
No 157
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.82 E-value=0.00016 Score=75.23 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=66.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALG--VKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987642 21 1235566677777778999998866532
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.|++|+|..
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 1222222 24699999999983
No 158
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.81 E-value=0.00018 Score=74.48 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..+.+.+ .+|+++++.+.+. +. ...++...+.+.++..|++++.+..+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLG--VQVTLIYRGELIL--------RG--FDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEeCCCCC--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4679999999999999999999998 9999999877541 22 1235556677777788999998865522
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.||+|+|..
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence 1222222 24699999999983
No 159
>PRK14694 putative mercuric reductase; Provisional
Probab=97.78 E-value=0.00022 Score=74.26 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=65.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++|+|||+|+.|+.+|..|.+.+ .+|+++++...+ |. ...++...+.+.+++.|++++.++.+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG--SRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999999 999999864311 21 1234566677778888999998866532
Q ss_pred -------EEEecceeeccCEEEEccCCCCCCC
Q 011535 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~~~~~~~yd~vvlAtG~~~~~~ 122 (483)
.+...+....+|.||+|+|. .|+.
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 275 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGR-TPNT 275 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCC-CCCc
Confidence 12222334579999999998 3443
No 160
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.78 E-value=3.7e-05 Score=79.97 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCcee
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~~ 61 (483)
....++++|||||.|||+||.+|.+.+ ++.+|+|+|+.+.+||.+.
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 345689999999999999999999975 5699999999999998764
No 161
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=0.00021 Score=74.38 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=66.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYG--VDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3579999999999999999999998 9999999876532 332 234566677778888999999876521
Q ss_pred --------EEEec--ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.|++|+|.
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 12222 22 2469999999997
No 162
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.77 E-value=2.7e-05 Score=80.01 Aligned_cols=39 Identities=36% Similarity=0.429 Sum_probs=32.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+||||||||||++||..+++.| .+|+|||+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcce
Confidence 6999999999999999999999 99999999999988654
No 163
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.77 E-value=3.1e-05 Score=80.56 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCC--CCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~--~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||+|||+||..|.+++| +.+|+|+|+.+.+||.++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 4689999999999999999999833 399999999999998765
No 164
>PRK07233 hypothetical protein; Provisional
Probab=97.76 E-value=3e-05 Score=79.85 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.8
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|||||+|||+||..|++.| .+|+|+|+.+.+||...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCcee
Confidence 6899999999999999999999 99999999999999764
No 165
>PRK06116 glutathione reductase; Validated
Probab=97.75 E-value=0.00026 Score=73.36 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.++..|++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLG--SETHLFVRGDAPL--------RG--FDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCc--------cc--cCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 4589999999999999999999998 9999999877532 21 1235666677778888999998876532
Q ss_pred E---------EEeccee-eccCEEEEccCC
Q 011535 98 S---------VSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 ~---------~~~~~~~-~~yd~vvlAtG~ 117 (483)
- +.+.++. ..+|.||+|+|.
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 1 2222222 469999999997
No 166
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.75 E-value=0.00016 Score=73.75 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++++|||+|++|+.+|..|+++| ++|+++|+.+.+++.+.. .++...+.+.++..+++++.+..+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 689999999999999999999999 999999999988765431 45667788888888899888766421
Q ss_pred E----------EEecc-eeeccCEEEEccCCC
Q 011535 98 S----------VSLSE-LRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~----------~~~~~-~~~~yd~vvlAtG~~ 118 (483)
+ ..... ....+|.+++++|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 1 11222 224699999999983
No 167
>PLN02576 protoporphyrinogen oxidase
Probab=97.74 E-value=4.1e-05 Score=80.45 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=38.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||++|.+. + .+|+|+|+.+.+||.++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCcee
Confidence 456899999999999999999999 8 99999999999999765
No 168
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.73 E-value=0.00014 Score=72.79 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=70.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCC-----------CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQ-----------EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~-----------~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~ 88 (483)
..|+||||||.|+.+|-.|+...+ +++|+|+|+.|.. .|.+ .+++..+.++.+++.||+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------Lp~~--~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------LPMF--PPKLSKYAERALEKLGVE 225 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------ccCC--CHHHHHHHHHHHHHCCCE
Confidence 479999999999999998876431 3599999998863 3553 346777888889999999
Q ss_pred EEeCeEEce----EEEeccee--eccCEEEEccCCCC
Q 011535 89 FFGNVTLGS----SVSLSELR--QLYHVVVLAYGAES 119 (483)
Q Consensus 89 ~~~~~~v~~----~~~~~~~~--~~yd~vvlAtG~~~ 119 (483)
+..++.|.. .++++++. ..++.+|-|+|...
T Consensus 226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcC
Confidence 999988743 35665554 68999999999843
No 169
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=0.00036 Score=72.69 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..+.+.+ .+|+|||+.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G--~~Vtlie~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLG--AQVTVVEYLDRIC--------PGT--DTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCCCC--------CCC--CHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 4689999999999999999999999 9999999877542 321 234556677777778999998865521
Q ss_pred --------EEEec---c---eeeccCEEEEccCCC
Q 011535 98 --------SVSLS---E---LRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~---~---~~~~yd~vvlAtG~~ 118 (483)
.+.+. + ....+|.|++|+|..
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 11221 1 124689999999983
No 170
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.72 E-value=3.4e-05 Score=76.85 Aligned_cols=35 Identities=43% Similarity=0.702 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhcccc
Confidence 58999999999999999999999 999999998653
No 171
>PRK07045 putative monooxygenase; Reviewed
Probab=97.72 E-value=4e-05 Score=77.83 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+..++|+||||||||+++|..|+++| ++|+|||+.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCcc
Confidence 34579999999999999999999999 999999998754
No 172
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.71 E-value=4.7e-05 Score=79.27 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=37.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||.|||+||+.|.+.+ ++.+|+|+|+.+++||..+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 58999999999999999999863 24899999999999998653
No 173
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.71 E-value=4.4e-05 Score=80.15 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||++||+||..|++.| .+|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence 68999999999999999999999 99999999999998754
No 174
>PRK14727 putative mercuric reductase; Provisional
Probab=97.70 E-value=0.00035 Score=73.03 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++|+|||+|+.|+.+|..|.+.+ .+|+|+++... + +. ...++...+.+.++..|++++.++.+..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~----l-----~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLG--SRVTILARSTL----L-----FR--EDPLLGETLTACFEKEGIEVLNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCC----C-----Cc--chHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence 589999999999999999999998 99999987421 1 22 1234566677778888999998876532
Q ss_pred -------EEEecceeeccCEEEEccCCC
Q 011535 98 -------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 -------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+...+....+|.||+|+|..
T Consensus 255 ~~~~~~~~v~~~~g~i~aD~VlvA~G~~ 282 (479)
T PRK14727 255 EHDDNGFVLTTGHGELRAEKLLISTGRH 282 (479)
T ss_pred EEeCCEEEEEEcCCeEEeCEEEEccCCC
Confidence 122233345699999999983
No 175
>PLN02507 glutathione reductase
Probab=97.70 E-value=0.00033 Score=73.50 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=65.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||+|+.|+.+|..+.+.+ .+|+|+++.+.+. +. ...++...+.+.++..|++++.++.+..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMG--ATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999998 9999999877532 22 1235566677777788999999876532
Q ss_pred -------EEEecce-eeccCEEEEccCCC
Q 011535 98 -------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 -------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+...++ ...+|.|++|+|..
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 1222222 24699999999983
No 176
>PLN02268 probable polyamine oxidase
Probab=97.70 E-value=4.8e-05 Score=78.55 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=37.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||.|||+||+.|.+.+ ++|+|+|+.+++||-+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceeee
Confidence 47999999999999999999998 999999999999997653
No 177
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.69 E-value=4.9e-05 Score=78.48 Aligned_cols=38 Identities=42% Similarity=0.575 Sum_probs=34.3
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++...++|+||||||||+++|..|++.| ++|+|+|+.+
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3445689999999999999999999999 9999999875
No 178
>PRK07846 mycothione reductase; Reviewed
Probab=97.69 E-value=0.00034 Score=72.48 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+..+ .+++++.+..+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~l~~-~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSALG--VRVTVVNRSGRLL--------RH--LDDDISERFTELAS-KRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHh-cCeEEEeCCEEEE
Confidence 4689999999999999999999998 9999999987642 21 12234444554443 4799988876522
Q ss_pred --------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|..
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 264 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGR-VPNG 264 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECC-ccCc
Confidence 1222232 2469999999998 3443
No 179
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.69 E-value=4.7e-05 Score=78.05 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCcc
Confidence 34689999999999999999999999 999999998753
No 180
>PRK13748 putative mercuric reductase; Provisional
Probab=97.69 E-value=0.00032 Score=74.95 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+. + +. ...++...+.+.++..|++++.++.+..
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~----l-----~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~ 335 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLG--SKVTILARSTL----F-----FR--EDPAIGEAVTAAFRAEGIEVLEHTQASQ 335 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCcc----c-----cc--cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3589999999999999999999999 99999997531 1 22 1235566677778888999998876532
Q ss_pred E--------EEecceeeccCEEEEccCCCCCCC
Q 011535 98 S--------VSLSELRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ~--------~~~~~~~~~yd~vvlAtG~~~~~~ 122 (483)
. +...+....+|.|++|+|. .|+.
T Consensus 336 i~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 367 (561)
T PRK13748 336 VAHVDGEFVLTTGHGELRADKLLVATGR-APNT 367 (561)
T ss_pred EEecCCEEEEEecCCeEEeCEEEEccCC-CcCC
Confidence 1 2222334579999999998 4443
No 181
>PLN02661 Putative thiazole synthesis
Probab=97.67 E-value=0.0012 Score=65.02 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=71.5
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC-CCCCccCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV-NGLPFDNHK 358 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~-~~l~~~~~~ 358 (483)
..+++++....+.+++ . +++++.++.+..........+. ...+...+.++.||+|||-.+... ....+....
T Consensus 185 ~~gVkI~~~t~V~DLI--~-~~grVaGVVvnw~~v~~~~~~~----s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~ 257 (357)
T PLN02661 185 RPNVKLFNAVAAEDLI--V-KGDRVGGVVTNWALVAQNHDTQ----SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI 257 (357)
T ss_pred cCCCEEEeCeEeeeEE--e-cCCEEEEEEeecchhhhccCCC----CccceeEEECCEEEEcCCCCCcchhhhhhccccc
Confidence 5689999999999887 4 4678888775432110000000 001234799999999999654210 001111111
Q ss_pred Cc----------ccCCCCeeeecCCCCCCcccCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHHhc
Q 011535 359 GI----------VPNIRGRVLKNISGDSSQVENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 359 g~----------~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
|+ ..+..-..+|+. ...-+||+|++|-.++ +| .| +++.=+-.|+.+|+.|++.|..
T Consensus 258 g~~~~~pg~~~~~~~~~e~~~v~~---t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 258 GMIDSVPGMKALDMNAAEDAIVRL---TREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred CCccCCCCccccchhhHHHHHHhc---cCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 11 111111122222 2346899999997653 22 23 3433467899999999999873
No 182
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.66 E-value=0.0004 Score=72.28 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=66.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++++|||+|+.|+.+|..|++.+ .+|++|++.+.+. |.. ..++...+.+.++..|++++.+..+..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELG--VKVTLVSSRDRVL--------PGE--DADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCcCC--------CCC--CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 579999999999999999999998 9999999876542 321 234556677777888999998875421
Q ss_pred -------EEEeccee-eccCEEEEccCCCCCCC
Q 011535 98 -------SVSLSELR-QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~~~~~-~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++. ..+|.|++|+|. .|+.
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~-~pn~ 276 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGS-VPNT 276 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecC-CcCC
Confidence 12222222 469999999998 3443
No 183
>PRK07236 hypothetical protein; Provisional
Probab=97.65 E-value=6.6e-05 Score=76.21 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=33.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 34689999999999999999999999 99999999864
No 184
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.64 E-value=7.1e-05 Score=69.29 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=35.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.+|+|||+|+||+.||..|+..+ .+|+||||+.-.||-+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccch
Confidence 46999999999999999999999 9999999997766643
No 185
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.64 E-value=0.00042 Score=72.39 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++++|||||+.|+.+|..|++.+ .+|+|+++. .+ + |.. ..++...+.+.++..|++++.++.+..
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS-IL---L-----RGF--DQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhC--CcEEEEEec-cc---c-----ccc--CHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 4578999999999999999999999 999999863 21 1 221 235566677777888999998864321
Q ss_pred --------EEEecce----eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL----RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~----~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.+. ...+|.|++|+|. .|+.
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~-~pn~ 281 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR-DACT 281 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecC-CcCC
Confidence 1333222 3469999999997 3443
No 186
>PRK06753 hypothetical protein; Provisional
Probab=97.63 E-value=5.8e-05 Score=76.19 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+||||||||+++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcc
Confidence 48999999999999999999999 999999999764
No 187
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.63 E-value=0.00032 Score=77.75 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ....+....+.+.++..|++++.+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G--~~VtvVe~~~~ll--------~~-~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLG--VETHVIEFAPMLM--------AE-QLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeccccch--------hh-hcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 4578999999999999999999999 9999999877531 21 12234556677778888999999875522
Q ss_pred E----------EEeccee-eccCEEEEccCCCCCC
Q 011535 98 S----------VSLSELR-QLYHVVVLAYGAESDR 121 (483)
Q Consensus 98 ~----------~~~~~~~-~~yd~vvlAtG~~~~~ 121 (483)
. +.+.++. ..+|.||+|+|. .|+
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~-rPn 246 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGI-RPQ 246 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCc-ccC
Confidence 1 2233332 469999999998 344
No 188
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.63 E-value=0.0011 Score=65.25 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=82.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc------------------------
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------ 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~------------------------ 215 (483)
..|+|||+|++|+-+|..+.+ ...+|.++.+.+..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~---------------------~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~l 62 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAK---------------------AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFL 62 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhh---------------------cCCEEEEEecCccccceeEecCCCCccccccccHHHHH
Confidence 479999999999999999886 22456666654321
Q ss_pred -------------cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 216 -------------QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 216 -------------~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+.|++..+..+.+--++.++.....-.+..... .+.+.+.|.+... +.|
T Consensus 63 s~~p~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdk--------A~~Iv~~ll~~~~---------~~g 125 (408)
T COG2081 63 SRNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDK--------ASPIVDALLKELE---------ALG 125 (408)
T ss_pred HhCCCcchHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccc--------hHHHHHHHHHHHH---------HcC
Confidence 2347778888887777777776544322111111 1123344444433 789
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
|++++++.+..+. . ++. ...+. +.+++++.||.+|+|+|-+..|
T Consensus 126 V~i~~~~~v~~v~--~--~~~--~f~l~----------------t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 126 VTIRTRSRVSSVE--K--DDS--GFRLD----------------TSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred cEEEecceEEeEE--e--cCc--eEEEE----------------cCCCCEEEccEEEEecCCcCCC
Confidence 9999999999997 3 321 22221 2233389999999999965544
No 189
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.63 E-value=0.00031 Score=77.64 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. .........+.+.++..|++++.+..+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G--~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLG--MDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 4579999999999999999999999 9999999876531 11 01223445566777788999998875421
Q ss_pred --------EEEeccee-eccCEEEEccCCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCCC
Confidence 13334433 4699999999983
No 190
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.62 E-value=6.9e-05 Score=76.22 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 45679999999999999999999999 99999999864
No 191
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.62 E-value=0.00042 Score=71.23 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=65.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
++|+|||||++|+.+|..|.... ++.+|+||++.+.+. |.. .+.+...+.+.+++.|+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~~--~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GSF--DQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------ccC--CHHHHHHHHHHHHHCCC
Confidence 58999999999999999987521 248999999876542 221 23566777888888999
Q ss_pred EEEeCeEEce----EEEeccee-eccCEEEEccCCC
Q 011535 88 SFFGNVTLGS----SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 88 ~~~~~~~v~~----~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
+++.++.+.. .+.++++. ..+|.+|+|+|..
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCC
Confidence 9998876632 34455443 4699999999973
No 192
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.62 E-value=5.7e-05 Score=79.52 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=36.0
Q ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
|+|||||.+||+||..|++.| .+|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceE
Confidence 689999999999999999999 99999999999999865
No 193
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.62 E-value=5.6e-05 Score=73.78 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=39.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCCceeccc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVRSGV 64 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~ggl~~~g~ 64 (483)
..+|+|||||||||+||++|.+.. .+++|+++|+...+||....|.
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 468999999999999999987643 5799999999999999877663
No 194
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.60 E-value=6.9e-05 Score=77.77 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=36.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|||||+|||+||..|.++| ++|+|+|+.+.+||..+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCcc
Confidence 5899999999999999999999 99999999999998753
No 195
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.59 E-value=7.8e-05 Score=75.88 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+++|+|||||++|+++|..|++.| ++|+|||+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCccc
Confidence 3579999999999999999999999 999999998754
No 196
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.59 E-value=0.00033 Score=67.94 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=90.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.-+++++|||||..||..+.-..+.| .+||++|-.+..++.+. .++...+++.+...+++|.+++.+.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLG--seVT~VEf~~~i~~~mD----------~Eisk~~qr~L~kQgikF~l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLG--SEVTVVEFLDQIGGVMD----------GEISKAFQRVLQKQGIKFKLGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcC--CeEEEEEehhhhccccC----------HHHHHHHHHHHHhcCceeEeccEEE
Confidence 35789999999999999999999999 99999999988776543 2677888888888999999998873
Q ss_pred e---------EEEecce------eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 97 S---------SVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 97 ~---------~~~~~~~------~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
. .+.+.+. ...+|.+++|+|. +|.. .|.+++.+--..+...++--...+. . .--+
T Consensus 277 ~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-rP~t---~GLgle~iGi~~D~r~rv~v~~~f~-----t-~vP~ 346 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR-RPFT---EGLGLEKIGIELDKRGRVIVNTRFQ-----T-KVPH 346 (506)
T ss_pred EeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC-cccc---cCCChhhcccccccccceecccccc-----c-cCCc
Confidence 2 2222221 1358999999997 3433 3443322211113222221111111 1 2346
Q ss_pred EEEEcCCchHHHHHH
Q 011535 162 AVILGQGNVALDVAR 176 (483)
Q Consensus 162 vvVIG~G~~g~e~A~ 176 (483)
+-.||-=.-|--+|.
T Consensus 347 i~~IGDv~~gpMLAh 361 (506)
T KOG1335|consen 347 IYAIGDVTLGPMLAH 361 (506)
T ss_pred eEEecccCCcchhhh
Confidence 788887666655553
No 197
>PTZ00058 glutathione reductase; Provisional
Probab=97.58 E-value=0.00057 Score=72.35 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~ 98 (483)
+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.++..|++++.+..+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G--~~Vtli~~~~~il--------~~~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG--AESYIFARGNRLL--------RKF--DETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CcEEEEEeccccc--------ccC--CHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 689999999999999999999999 9999999876531 221 2345566777777889999988765311
Q ss_pred ---------EEecc-e-eeccCEEEEccCC
Q 011535 99 ---------VSLSE-L-RQLYHVVVLAYGA 117 (483)
Q Consensus 99 ---------~~~~~-~-~~~yd~vvlAtG~ 117 (483)
+...+ . ...+|.|++|+|.
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 11111 1 2469999999997
No 198
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.58 E-value=8.4e-05 Score=75.47 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+..++|+||||||+|+++|..|+++| ++|+|||+.+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCCC
Confidence 44579999999999999999999998 999999998653
No 199
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.58 E-value=7.2e-05 Score=76.34 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||+|+++|..|++.+++++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 689999999999999999999966699999999864
No 200
>PRK08013 oxidoreductase; Provisional
Probab=97.58 E-value=8.1e-05 Score=75.94 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~~ 38 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVPE 38 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCCc
Confidence 479999999999999999999999 999999998753
No 201
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.58 E-value=0.0001 Score=73.90 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=36.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.+|+|||||+||+++|..|++.+ .+|+|+|+.+.+||...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcee
Confidence 58999999999999999999988 99999999998888643
No 202
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.57 E-value=0.00038 Score=70.63 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc-------------------------
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------- 215 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~------------------------- 215 (483)
+|+|||||++|+-+|..+++ .+ .+|.|+.|....
T Consensus 2 dviIIGgGaAGl~aA~~aa~--------------------~g-~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~ 60 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE--------------------KG-ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFL 60 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH--------------------TT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEE
T ss_pred cEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEeCCcccccceeecCCCCccccccccchhhHh
Confidence 58999999999999999976 22 356666655322
Q ss_pred -------------cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 216 -------------QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 216 -------------~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
...|+..++.+++.--++.....+.... .|.. .....+.+.|.+... +.|
T Consensus 61 ~~~~~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~-fP~s-------~~a~~Vv~~L~~~l~---------~~g 123 (409)
T PF03486_consen 61 SGYGRNPKFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRV-FPKS-------DKASSVVDALLEELK---------RLG 123 (409)
T ss_dssp CS-TBTTTCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEE-EETT---------HHHHHHHHHHHHH---------HHT
T ss_pred hhcccchHHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEE-CCCC-------CcHHHHHHHHHHHHH---------HcC
Confidence 1225555666665555555544322211 1111 112334455554443 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+++++++.+..+. . +++.+-.|+. .+..++.||.||+|+|-.+.|
T Consensus 124 v~i~~~~~V~~i~--~-~~~~~f~v~~------------------~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 124 VEIHFNTRVKSIE--K-KEDGVFGVKT------------------KNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp -EEE-S--EEEEE--E-ETTEEEEEEE------------------TTTEEEEESEEEE----SSSG
T ss_pred CEEEeCCEeeeee--e-cCCceeEeec------------------cCcccccCCEEEEecCCCCcc
Confidence 9999999999997 3 2443333433 122489999999999987644
No 203
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56 E-value=0.00066 Score=70.76 Aligned_cols=91 Identities=19% Similarity=0.357 Sum_probs=64.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.++.. ++++.+..+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~il--------~~--~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFDQVI--------PA--ADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC--------Cc--CCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 3589999999999999999999999 9999999887642 32 1234555666666665 88888765521
Q ss_pred --------EEEecc--e---eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSE--L---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~--~---~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.+ . ...+|.||+|+|. .|+.
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~pn~ 276 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-VPNG 276 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc-cccC
Confidence 122221 1 2469999999998 3443
No 204
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.56 E-value=0.00058 Score=70.80 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++++|||||+.|+.+|..|.+.+ .+|++|++.+.+. +. ...++...+.+..+ .+++++.+..+..
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~~~~-~gI~i~~~~~V~~ 234 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALG--TRVTIVNRSTKLL--------RH--LDEDISDRFTEIAK-KKWDIRLGRNVTA 234 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCccc--------cc--cCHHHHHHHHHHHh-cCCEEEeCCEEEE
Confidence 3689999999999999999999998 9999999887642 21 11244445555444 4788888765422
Q ss_pred --------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|+.
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 267 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGR-VPNG 267 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeecc-CcCC
Confidence 1222222 2469999999998 3443
No 205
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.56 E-value=8.8e-05 Score=75.25 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..+|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 368999999999999999999999 9999999875
No 206
>PRK09126 hypothetical protein; Provisional
Probab=97.55 E-value=9.3e-05 Score=75.25 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 478999999999999999999999 99999999864
No 207
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.54 E-value=0.00079 Score=70.26 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
.+++|+|||||+.|+.+|..+... + .+|+|+++.+.+. |.. ..++...+.+.++..|++++.++.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G--~~Vtli~~~~~il--------~~~--d~~~~~~l~~~L~~~GI~i~~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRG--GKVTLCYRNNMIL--------RGF--DSTLRKELTKQLRANGINIMTNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCC--CeEEEEecCCccc--------ccc--CHHHHHHHHHHHHHcCCEEEcCCE
Confidence 458999999999999999876654 6 8999999887642 221 235666777778888999999875
Q ss_pred Ece---------EEEecce-eeccCEEEEccCCC
Q 011535 95 LGS---------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~---------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
+.. .+.+.+. ...+|.|++|+|..
T Consensus 254 v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred EEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 522 1222222 24699999999973
No 208
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.53 E-value=8.9e-05 Score=75.04 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=31.9
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCcc
Confidence 5899999999999999999999 999999999764
No 209
>PLN02546 glutathione reductase
Probab=97.53 E-value=0.00082 Score=71.15 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=65.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.++..|++++.+..+.
T Consensus 250 ~~~k~V~VIGgG~iGvE~A~~L~~~g--~~Vtlv~~~~~il--------~~--~d~~~~~~l~~~L~~~GV~i~~~~~v~ 317 (558)
T PLN02546 250 SKPEKIAIVGGGYIALEFAGIFNGLK--SDVHVFIRQKKVL--------RG--FDEEVRDFVAEQMSLRGIEFHTEESPQ 317 (558)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeccccc--------cc--cCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 34689999999999999999999998 9999999876532 22 123555666777778899999886542
Q ss_pred eE---------EEecceee-ccCEEEEccCCC
Q 011535 97 SS---------VSLSELRQ-LYHVVVLAYGAE 118 (483)
Q Consensus 97 ~~---------~~~~~~~~-~yd~vvlAtG~~ 118 (483)
.. +...+... .+|.|++|+|..
T Consensus 318 ~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 318 AIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred EEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 11 12222222 389999999983
No 210
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.53 E-value=0.00019 Score=73.39 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSG--LEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCCc
Confidence 368999999999999999999999 99999999873
No 211
>PRK07190 hypothetical protein; Provisional
Probab=97.53 E-value=0.00011 Score=76.65 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
....+|+||||||+|+.+|..|++.| ++|+|||+.+.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~G--i~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcC--CCEEEEeCCCcc
Confidence 34579999999999999999999999 999999998754
No 212
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.0025 Score=57.56 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=108.1
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-------cCC----HHHHHHH
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-------ACT----AKELREI 227 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-------~f~----~~el~~~ 227 (483)
...|+|||+|++|+-+|..|++ .+. +|.++.|+-.+.. -|. .++-+++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--------------------~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~i 88 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--------------------AGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADEI 88 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--------------------CCc-eEEEEEeecccCCcccccccccceeeecchHHHH
Confidence 4579999999999999999997 444 6999999832211 111 1344444
Q ss_pred hcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC-ceEE
Q 011535 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG-HVSG 306 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g-~v~~ 306 (483)
++-=++...-....+.- ....+ +...|...+. +.|.++.....+..+. - .++ +|.+
T Consensus 89 L~e~gI~ye~~e~g~~v--~ds~e---------~~skl~~~a~---------~aGaki~n~~~veDvi--~-r~~~rVaG 145 (262)
T COG1635 89 LDEFGIRYEEEEDGYYV--ADSAE---------FASKLAARAL---------DAGAKIFNGVSVEDVI--V-RDDPRVAG 145 (262)
T ss_pred HHHhCCcceecCCceEE--ecHHH---------HHHHHHHHHH---------hcCceeeecceEEEEE--E-ecCCceEE
Confidence 43222222221111100 00000 1112222221 5678887778888776 3 344 7888
Q ss_pred EEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC---------CCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN---------GLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 307 v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~---------~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
+.+.-.-.... +. -=+.-.+++..||-+||-...-.. +..+........+..-...++. ..
T Consensus 146 vVvNWt~V~~~--~l-----hvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~---T~ 215 (262)
T COG1635 146 VVVNWTPVQMA--GL-----HVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVEN---TG 215 (262)
T ss_pred EEEecchhhhc--cc-----ccCcceeeEEEEEeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhc---cc
Confidence 87764322111 00 002247899999999998763210 0001011111111111233333 33
Q ss_pred cccCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHHh
Q 011535 378 QVENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 378 t~~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l~ 416 (483)
.-.||+|++|-..+ .| .| +++.=+-.|+.+|+.|.+.|.
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 56899999997653 12 23 333335678889988888775
No 213
>PRK05868 hypothetical protein; Validated
Probab=97.51 E-value=0.00011 Score=74.07 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+++|+||||||+|+++|..|+++| ++|+|||+.+.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Confidence 368999999999999999999999 999999998764
No 214
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.51 E-value=0.0001 Score=74.87 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 35589999999999999999999999 9999999875
No 215
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.50 E-value=0.00012 Score=74.37 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 468999999999999999999999 99999999874
No 216
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.49 E-value=0.00014 Score=76.37 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=37.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
.+|+|||||.+||++|..|++.| .+|+|+|+++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeE
Confidence 37999999999999999999999 999999999999987653
No 217
>PRK07538 hypothetical protein; Provisional
Probab=97.49 E-value=0.00012 Score=75.02 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+||||||||+++|..|+++| ++|+|||+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCcc
Confidence 48999999999999999999999 999999998753
No 218
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.49 E-value=0.00092 Score=69.54 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++.. ++++.+..+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLG--VKVTVFERGDRIL--------PL--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 4689999999999999999999998 9999999987643 21 1235566677777777 89888865521
Q ss_pred -------EEEe--cc---eeeccCEEEEccCCCCCCC
Q 011535 98 -------SVSL--SE---LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~--~~---~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+ .+ ....+|.|++|+|. .|+.
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~p~~ 270 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGR-RPNT 270 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCC-ccCC
Confidence 1221 11 12469999999998 3443
No 219
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.48 E-value=0.00088 Score=70.30 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|++.+ .+|+|+++. .+ + +. ...++...+.+.++..+++++.++.+..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 247 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELG--FDVTVAVRS-IP---L-----RG--FDRQCSEKVVEYMKEQGTLFLEGVVPIN 247 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcC-cc---c-----cc--CCHHHHHHHHHHHHHcCCEEEcCCeEEE
Confidence 3569999999999999999999999 999999863 22 1 22 1234556677777888999998865421
Q ss_pred --------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|+.
T Consensus 248 v~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 280 (499)
T PTZ00052 248 IEKMDDKIKVLFSDGTTELFDTVLYATGR-KPDI 280 (499)
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEEeeCC-CCCc
Confidence 1222222 2469999999998 3443
No 220
>PLN02568 polyamine oxidase
Probab=97.48 E-value=0.00018 Score=75.79 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC---CCCeEEEEecCCCCCCceec
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~---~~~~v~lie~~~~~ggl~~~ 62 (483)
..++|+|||||+|||+||..|.+.+ .+.+|+|+|+...+||.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3578999999999999999999875 24899999999999997653
No 221
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.47 E-value=0.00012 Score=74.39 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 478999999999999999999999 999999998
No 222
>PRK07588 hypothetical protein; Provisional
Probab=97.47 E-value=0.00013 Score=74.13 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 48999999999999999999999 99999998865
No 223
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.46 E-value=3.2e-05 Score=68.73 Aligned_cols=58 Identities=31% Similarity=0.367 Sum_probs=46.1
Q ss_pred hhhhhhhhccCCC-CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 5 RAWLSRSFTALSS-NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
|.+..|.+..+.+ ...+|+|||+|.|||++|+.+.++.|+++|.|||.+-.|||..+.
T Consensus 61 RaMTrRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 61 RAMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred HHHHHHHHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 4445555544433 357999999999999999999999999999999999888776543
No 224
>PRK06126 hypothetical protein; Provisional
Probab=97.45 E-value=0.00016 Score=76.95 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G--~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRG--VDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 45689999999999999999999999 99999998853
No 225
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.45 E-value=0.00017 Score=73.78 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=40.6
Q ss_pred hhhhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhc-CCCC-eEEEEecCCC
Q 011535 5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (483)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~-~~~~-~v~lie~~~~ 55 (483)
+.|..++...+.....+|+|||||.+|+++|++|+++ + . +|+|||+...
T Consensus 16 ~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~~ 66 (407)
T TIGR01373 16 RGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGWL 66 (407)
T ss_pred CCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEcccc
Confidence 4555666666667789999999999999999999996 6 5 8999999854
No 226
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.45 E-value=0.00015 Score=73.92 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=32.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 78999999999999999999999 99999999865
No 227
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.44 E-value=0.00014 Score=73.96 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~ 53 (483)
...+|+||||||||+++|..|+++ | ++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 457999999999999999999998 8 999999994
No 228
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.43 E-value=0.00018 Score=72.49 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=35.1
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
...||+|++|.+. |-.|-. .|..+|..++.|++..+.+.+.
T Consensus 328 k~~~~l~~AGqi~-g~~Gy~-ea~a~G~~Ag~n~~~~~~g~~~ 368 (436)
T PRK05335 328 KKRPNLFFAGQIT-GVEGYV-ESAASGLLAGINAARLALGKEP 368 (436)
T ss_pred cCCCCEEeeeeec-CchHHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 3679999999994 667777 7999999999999999987644
No 229
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.42 E-value=0.0012 Score=71.02 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHH-hcCCeEEEeCeEEce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLGS 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~v~~ 97 (483)
+++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.+ +..+++++.++.+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G--~eVTLIe~~~~ll--------~~--~d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALG--SEVVSFEYSPQLL--------PL--LDADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 579999999999999999999998 9999999987642 22 1224555555543 567899998876521
Q ss_pred --------EEEe--c-------ce---------eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSL--S-------EL---------RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~--~-------~~---------~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+ . .. ...+|.|++|+|. .|+.
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr-~Pnt 429 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR-KPNT 429 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc-ccCC
Confidence 1221 1 01 3468999999998 4443
No 230
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.42 E-value=0.0014 Score=69.00 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=33.6
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.+||+|++|++ +|..|.. .|..+|..++.|++..+.+.+
T Consensus 356 ~~~gLf~AGqi-~Gt~Gy~-eAaa~Gl~Ag~naa~~~~~~~ 394 (617)
T TIGR00136 356 LIQGLFFAGQI-NGTTGYE-EAAAQGLMAGINAALKLQNKE 394 (617)
T ss_pred CCCCeEEcccc-CCcchHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 47999999997 5678866 899999999999999988753
No 231
>PLN02529 lysine-specific histone demethylase 1
Probab=97.42 E-value=0.00021 Score=77.40 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...++|+|||||+|||+||..|++.| ++|+|+|+.+.+||.+.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRVY 200 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCcee
Confidence 35689999999999999999999999 99999999998888654
No 232
>PRK06185 hypothetical protein; Provisional
Probab=97.42 E-value=0.00018 Score=73.53 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 4579999999999999999999998 99999999864
No 233
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.41 E-value=0.00018 Score=73.22 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 468999999999999999999999 99999999874
No 234
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.40 E-value=0.00063 Score=71.16 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=56.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|++|+++|..|.++| .+|+++|+.+.. ....+.+.++..|++++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDE-----------------RHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchh-----------------hhHHHHHHHHHcCCEEEECCCcc-
Confidence 4679999999999999999999999 999999976421 11223344556688888775442
Q ss_pred EEEecceeeccCEEEEccCCC
Q 011535 98 SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~~ 118 (483)
....+|.||+++|..
T Consensus 75 ------~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWR 89 (480)
T ss_pred ------ccCCCCEEEECCCcC
Confidence 123589999999983
No 235
>PLN02487 zeta-carotene desaturase
Probab=97.39 E-value=0.00021 Score=75.49 Aligned_cols=41 Identities=37% Similarity=0.487 Sum_probs=38.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||++||++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 469999999999999999999999 99999999999998764
No 236
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.38 E-value=0.00021 Score=74.50 Aligned_cols=40 Identities=38% Similarity=0.439 Sum_probs=36.9
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
+|+|||||.+||++|..|.+.| ++|+|+|+.+.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceeee
Confidence 5899999999999999999999 999999999999987553
No 237
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.36 E-value=0.00019 Score=72.46 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+|+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCCC
Confidence 58999999999999999999999 9999999863
No 238
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.34 E-value=0.00025 Score=75.45 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 5579999999999999999999999 99999999974
No 239
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.33 E-value=0.00023 Score=72.78 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 469999999999999999999999 999999985
No 240
>PLN02676 polyamine oxidase
Probab=97.33 E-value=0.00028 Score=73.70 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=39.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceec
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~ 62 (483)
...++|+|||||++||+||..|.+.+ . +|+|+|+.+.+||.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMRK 68 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCccee
Confidence 35679999999999999999999998 7 69999999999987653
No 241
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.33 E-value=0.0003 Score=70.00 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+|||||++|+++|.+|++.+ .+|+|+|++...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeecccc
Confidence 6999999999999999999999 999999999443
No 242
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.32 E-value=0.00026 Score=72.62 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+|||||+|||++|..|.+.+ .++|+|||+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g-~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS-HLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CCCEEEEecCCcC
Confidence 47999999999999999999986 1499999998764
No 243
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.32 E-value=0.00023 Score=73.51 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.7
Q ss_pred CeEEEECccHHHHHHHHHHHh----cCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~----~~~~~~v~lie~~ 53 (483)
++|+||||||+|+++|..|++ +| ++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G--~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKD--LKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCC--CeEEEEeCC
Confidence 479999999999999999998 67 999999994
No 244
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.32 E-value=0.00021 Score=68.42 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||+|.+||+||..|.++ ++|+|||.+...||..+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 467999999999999999999998 89999999999888643
No 245
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.32 E-value=0.00033 Score=70.03 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
....+|||||||.|||+||.+|...+ -.+++|+|..++.||-+.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIH 62 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEe
Confidence 34579999999999999999999765 268999999999998654
No 246
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.31 E-value=0.00031 Score=76.55 Aligned_cols=42 Identities=33% Similarity=0.504 Sum_probs=38.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|++||..|.+.+ ++|+|+|+.+.+||-+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCccc
Confidence 4688999999999999999999999 99999999999988643
No 247
>PRK10262 thioredoxin reductase; Provisional
Probab=97.31 E-value=0.0022 Score=63.33 Aligned_cols=87 Identities=22% Similarity=0.233 Sum_probs=63.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .+ ..+...+.+.++..+++++.+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~--~~Vtlv~~~~~~~--------~~----~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------AE----KILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEECCccC--------CC----HHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 4689999999999999999999998 9999999876420 11 23445566667778899988765421
Q ss_pred ---------EEEecce-------eeccCEEEEccCCC
Q 011535 98 ---------SVSLSEL-------RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ---------~~~~~~~-------~~~yd~vvlAtG~~ 118 (483)
.+.+.+. ...+|.||+|+|..
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 1222211 24689999999983
No 248
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.29 E-value=0.00035 Score=74.21 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=34.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G--~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG--VRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence 45689999999999999999999999 999999999653
No 249
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.29 E-value=0.00028 Score=75.48 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..+.+|+|||||++||++|..|+++| ++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--i~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--FDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEeccc
Confidence 35689999999999999999999999 9999999975
No 250
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.29 E-value=0.00034 Score=71.57 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+|||||.+|+++|++|++.+ .+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 59999999999999999999998 999999998753
No 251
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.27 E-value=0.0019 Score=64.92 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc----CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~----~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
..++|+|||+|++|+.+|..|.+. +...+|+|+. .+.+ + +. ...++...+.+.++..+++++.++
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~---l-----~~--~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASL---L-----PG--FPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcc---c-----cc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 357999999999999999999863 2225899993 3221 1 11 123455667777888899999987
Q ss_pred EEce----EEEecce-eeccCEEEEccCCC
Q 011535 94 TLGS----SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 94 ~v~~----~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.. .+.+.++ ...+|.||+|+|..
T Consensus 213 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 213 PVTRGPDGALILADGRTLPADAILWATGAR 242 (364)
T ss_pred eeEEEcCCeEEeCCCCEEecCEEEEccCCC
Confidence 6532 2444433 35699999999984
No 252
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.27 E-value=0.0015 Score=63.41 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.2
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+|+|||+|++|+.+|..|.+ .+. +|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--------------------~g~-~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--------------------ANL-KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeccC
Confidence 59999999999999999986 444 699999765
No 253
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.26 E-value=0.00032 Score=70.88 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=30.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+||||||||+++|.+|.+..++.+|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 699999999999999999544445999999987654
No 254
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.26 E-value=0.0022 Score=66.37 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+-+|..|.+ .|. +|+++.+++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--------------------~G~-~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--------------------EGH-TVVVFEREKQV 45 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--------------------cCC-eEEEEecCCCC
Confidence 45899999999999999999986 453 79999987543
No 255
>PLN02612 phytoene desaturase
Probab=97.25 E-value=0.00043 Score=73.75 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..+++|+|||||++||++|.+|.+.+ .+|+|+|+.+.+||...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcce
Confidence 34689999999999999999999999 99999999999888754
No 256
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.24 E-value=0.00028 Score=72.42 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=31.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|+|||+|.||+.||+.+++.+ .+|+|+|+.+..+|
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccccc
Confidence 6999999999999999999999 99999999987544
No 257
>PLN02985 squalene monooxygenase
Probab=97.24 E-value=0.0004 Score=72.97 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||||++|+++|..|++.| .+|+|+|+.+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G--~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG--RRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC--CeEEEEECcCC
Confidence 34679999999999999999999999 99999999753
No 258
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.23 E-value=0.0023 Score=64.22 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
..+|+++|+|+.|+.+|..|.... .+|++|++.+.+- |.. ....+...+..++++.+++|+.++.+..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~--~~VT~V~~e~~~~--------~~l-f~~~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKA--KSVTVVFPEPWLL--------PRL-FGPSIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcC--ceEEEEccCccch--------hhh-hhHHHHHHHHHHHHhcCeEEEEecceeec
Confidence 678999999999999999999998 9999999887642 221 1234666778888889999999987632
Q ss_pred ---------EEEeccee-eccCEEEEccCCCCCCC
Q 011535 98 ---------SVSLSELR-QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ---------~~~~~~~~-~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++. ..+|.||+.+|+ .|..
T Consensus 282 ~~~~~Gev~~V~l~dg~~l~adlvv~GiG~-~p~t 315 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGKTLEADLVVVGIGI-KPNT 315 (478)
T ss_pred ccCCCCcEEEEEeccCCEeccCeEEEeecc-cccc
Confidence 23344443 369999999998 4444
No 259
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0005 Score=68.68 Aligned_cols=43 Identities=30% Similarity=0.287 Sum_probs=39.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
....+|+|||+|.+||++|..|.+.| ++|+|+|..+.+||-+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCceeE
Confidence 56789999999999999999999999 99999999999888543
No 260
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.21 E-value=0.00044 Score=72.71 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|||||+|.||++||..+++.| .+|+|+|+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Confidence 568999999999999999999999 99999999987655
No 261
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.21 E-value=0.00037 Score=70.57 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|+||||||||+++|..|++.| +++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCC-CceEEEEeCCCc
Confidence 5899999999999999999985 389999999864
No 262
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.18 E-value=0.00051 Score=69.36 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||.+|+++|+.|++++ .+|+|||+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence 478999999999999999999998 999999998644
No 263
>PRK11445 putative oxidoreductase; Provisional
Probab=97.18 E-value=0.00044 Score=69.25 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence 6899999999999999999875 89999998863
No 264
>PTZ00367 squalene epoxidase; Provisional
Probab=97.18 E-value=0.00051 Score=72.76 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||++|+++|..|++.| ++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G--~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQG--RKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcC--CEEEEEcccc
Confidence 4679999999999999999999999 9999999976
No 265
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00057 Score=69.24 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=34.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
.+++|+|||||.+|+++|++|++.| .+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCccCC
Confidence 5689999999999999999999999 8999999987543
No 266
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.16 E-value=0.00047 Score=74.36 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~ 55 (483)
...+|+||||||+||.+|..|++. | ++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~G--i~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPD--ITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCC--CcEEEEEcCCC
Confidence 367999999999999999999995 8 99999999864
No 267
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.15 E-value=0.00053 Score=69.30 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+|+|||||.+|+++|++|++++ .+|+|||+.+.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCC
Confidence 47999999999999999999998 999999997543
No 268
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.14 E-value=0.00054 Score=69.71 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+|+|||||.+|+++|++|+++.|+.+|+|+|+.+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 6899999999999999999999334999999998654
No 269
>PRK06996 hypothetical protein; Provisional
Probab=97.12 E-value=0.00057 Score=69.65 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=34.4
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCC--CCeEEEEecCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLP 54 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~--~~~v~lie~~~ 54 (483)
++....++|+||||||+|+++|..|++.+- +.+|+|+|+.+
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 355567899999999999999999999861 26899999974
No 270
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.12 E-value=0.00063 Score=70.90 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=43.2
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-Cc-------chhHhhHHHHHHHHHHHHHHHhc
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PT-------GIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~-------~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
...|+.+|.+++|+..+. +.+||+||+|.|+.+ .. ..+..++-.|+.++++++++...
T Consensus 398 t~GGl~~d~~~~vl~~~g----~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 398 TYLGLKVDEDARVRFADG----RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred ecccEEECCCceEECCCC----CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 345788888999886654 579999999998654 21 22336788999999999887654
No 271
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.12 E-value=0.0006 Score=68.70 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=32.7
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|+|||||+||+++|..|++..++++|+|+|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 68999999999999999998733499999999876554
No 272
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.09 E-value=0.0007 Score=70.69 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||||..|+++|+.|++..|+.+|+|+||.+.+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 457999999999999999999998667999999998653
No 273
>PRK07121 hypothetical protein; Validated
Probab=97.09 E-value=0.00067 Score=71.18 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|.||++||..+++.+ .+|+|+||.+..+|
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCC
Confidence 579999999999999999999999 99999999977554
No 274
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.08 E-value=0.00063 Score=68.96 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=35.7
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
...|++|.+|-+ +|-.|-. .|..||..++.|++..+.+.+.
T Consensus 327 k~~~~lf~AGQi-~G~~GY~-Eaaa~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 327 KDRQTLFFAGQL-TGVEGYV-ASTAGGWLAGINAARLALGEPL 367 (433)
T ss_pred CCCCCEEECccc-ccchHHH-HHHHHHHHHHHHHHHHHcCCCC
Confidence 457999999998 6788888 7999999999999999988643
No 275
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.07 E-value=0.00076 Score=67.84 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||.+|+++|++|++.+ .+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G--~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 37999999999999999999998 99999999864
No 276
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.05 E-value=0.00087 Score=70.47 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||||..|+++|+.|+++| ++|+|+|+.+..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--~~V~LlEk~d~~~G 43 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRG--LKVLLCEKDDLAQG 43 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCC
Confidence 4579999999999999999999999 99999999975443
No 277
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.03 E-value=0.00087 Score=69.71 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||.+|+++|++|++.+|+.+|+|+|+...
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4689999999999999999999844599999999754
No 278
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.02 E-value=0.00096 Score=70.18 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..++|+|||||..|+++|..|+++| ++|+|||+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--l~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRG--LSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCC
Confidence 4589999999999999999999999 99999999865443
No 279
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.02 E-value=0.00079 Score=69.00 Aligned_cols=34 Identities=41% Similarity=0.559 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|||||.+|+++|.+|++.+ .+|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 48999999999999999999998 99999999854
No 280
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.01 E-value=0.00088 Score=71.69 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+.+|+|||+|.|||+||..+++.+ .+|+|+|+.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence 459999999999999999999999 999999988654
No 281
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.00 E-value=0.0028 Score=57.69 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=63.1
Q ss_pred cceEEEeecCCcceeecccCCCCceE--EEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC--CCCC---
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVS--GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP--VNGL--- 352 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~--~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~--~~~l--- 352 (483)
..++++++...+.++. . ....+. .+.+. ...+++..++++|.||+|+|..|.. +++.
T Consensus 70 ~~~v~~~~~~~v~~i~--~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~ 133 (201)
T PF07992_consen 70 NRGVEIRLNAKVVSID--P-ESKRVVCPAVTIQ-------------VVETGDGREIKYDYLVIATGSRPRTPNIPGEEVA 133 (201)
T ss_dssp HHTHEEEHHHTEEEEE--E-STTEEEETCEEEE-------------EEETTTEEEEEEEEEEEESTEEEEEESSTTTTTE
T ss_pred cceEEEeecccccccc--c-cccccccCcccce-------------eeccCCceEecCCeeeecCccccceeecCCCccc
Confidence 4578887778888886 3 233220 00110 1124566799999999999988752 3321
Q ss_pred ---------------------------Ccc-CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC
Q 011535 353 ---------------------------PFD-NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG 392 (483)
Q Consensus 353 ---------------------------~~~-~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g 392 (483)
.+. +..++.++++|++.+|+. ++++.|+|||+|||+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~--~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 134 YFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDEN--LQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp CBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTT--SBBSSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence 011 344677888999999997 78899999999999764
No 282
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.97 E-value=0.0042 Score=59.56 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+++|||+|.-|+++|+.|++++ .++.++|+-+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~~ 41 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFPL 41 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcC--CeEEEEeccCC
Confidence 4578999999999999999999999 99999998854
No 283
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.97 E-value=0.0021 Score=61.26 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=36.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.+++|||+|.+|..+|..|++.| .+|.|+|+.++.||-.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCcc
Confidence 68999999999999999999989 9999999999998853
No 284
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.96 E-value=0.00093 Score=70.40 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+| ||++||.++++.+ .+|+|||+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 5699999999 9999999999999 99999999987554
No 285
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.96 E-value=0.001 Score=71.11 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||.||++||..+++.+++.+|+|+||.+..+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 358999999999999999999886558999999986533
No 286
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.95 E-value=0.00098 Score=69.36 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|||+|.|||+||..+++.+ .+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G--~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKG--FDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 79999999999999999999998 99999999753
No 287
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.92 E-value=0.0015 Score=64.53 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
.-++|||||||.|+.+|..|+..- .+++|+++|..|.. .+.+ .+.+..+.++++.+.+
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------L~mF--dkrl~~yae~~f~~~~ 287 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------LNMF--DKRLVEYAENQFVRDG 287 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------HHHH--HHHHHHHHHHHhhhcc
Confidence 357999999999999999987521 25899999987653 1221 2456677788888899
Q ss_pred eEEEeCeEEc----eEEEecce-----eeccCEEEEccCCCCCCCC
Q 011535 87 CSFFGNVTLG----SSVSLSEL-----RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 87 v~~~~~~~v~----~~~~~~~~-----~~~yd~vvlAtG~~~~~~~ 123 (483)
+++..++.+. +++..+.. ...|-.+|=|||. .+++.
T Consensus 288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~-~~rp~ 332 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGN-GPRPV 332 (491)
T ss_pred ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCC-CCchh
Confidence 9999997763 23443332 2359999999998 45553
No 288
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.91 E-value=0.0065 Score=64.13 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=58.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhc-CCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~ 96 (483)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. . . ..+.+.++. .|++++.++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g--~~Vtli~~~~~l~--------~-----~---~~l~~~l~~~~gV~i~~~~~v~ 412 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIV--RHVTVLEFADELK--------A-----D---KVLQDKLKSLPNVDILTSAQTT 412 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC--cEEEEEEeCCcCC--------h-----h---HHHHHHHhcCCCCEEEECCeeE
Confidence 3579999999999999999999988 8999999765431 1 1 123344443 589998886542
Q ss_pred e---------EEEecc------eeeccCEEEEccCCCCCC
Q 011535 97 S---------SVSLSE------LRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 97 ~---------~~~~~~------~~~~yd~vvlAtG~~~~~ 121 (483)
. .+.+.+ ....+|.|++|+|. .|.
T Consensus 413 ~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-~Pn 451 (515)
T TIGR03140 413 EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-VPN 451 (515)
T ss_pred EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC-cCC
Confidence 1 133221 12358999999998 343
No 289
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.0037 Score=63.81 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++|+|.||-+ +|.+|-- .|..||-.++-|.+..+.+.
T Consensus 358 ~I~GLf~AGQI-NGTtGYE-EAAaQGliAGiNAal~~~~~ 395 (621)
T COG0445 358 KIKGLFFAGQI-NGTTGYE-EAAAQGLIAGINAALKVQGK 395 (621)
T ss_pred eecceEEcccc-cCCchhH-HHHhhhHHHHHHHHHHhcCC
Confidence 57899999998 7788876 79999999999988877654
No 290
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.90 E-value=0.0012 Score=71.03 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.| .+|+|+||.+..+
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~lveK~~~~~ 65 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELG--YKTACISKLFPTR 65 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEeccCCCC
Confidence 569999999999999999999998 9999999986543
No 291
>PLN03000 amine oxidase
Probab=96.89 E-value=0.0013 Score=71.92 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=38.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|+.+|..|.+.+ .+|+|+|+.+.+||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCcc
Confidence 4689999999999999999999998 99999999999988654
No 292
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.89 E-value=0.0014 Score=66.22 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=36.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|+|||||..|+++|..|.+..|+.+|+|+||.+.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 4579999999999999999999999999999999997654
No 293
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.89 E-value=0.0013 Score=70.37 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||+|.|||+||..+++.+ .+|+|||+.+.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 34579999999999999999999998 99999999754
No 294
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.88 E-value=0.0012 Score=68.75 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||.+|+++|..|++..|+.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 379999999999999999999856699999999754
No 295
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.88 E-value=0.0014 Score=68.35 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||||..|+++|+.|++.+|..+|+|+|+.+.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 345899999999999999999999866679999999853
No 296
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.87 E-value=0.0014 Score=71.35 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||.+|+++|++|+++| .+|+|+|+...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G--~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRG--WQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 59999999999999999999999 99999999853
No 297
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.87 E-value=0.0015 Score=69.34 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+|||||..|+++|+.|+++| ++|+|||+...
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG--~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRG--LRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 579999999999999999999999 99999999754
No 298
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.86 E-value=0.0013 Score=69.90 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--CCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--TPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--~~gg 58 (483)
..+|+|||+|.|||+||..+++.+ .+|+|+|+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCC
Confidence 469999999999999999999999 9999999998 5555
No 299
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.86 E-value=0.0011 Score=65.15 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=55.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcC----CeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE----RCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~----~v~~~~~~~v 95 (483)
++|.|||.|+.||..|..|++.| ++|+.+|..+.--..+..|..|-+.. .+++++++. +++|-.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~g~~PI~Ep------gLe~ll~~~~~~gRl~fTtd--- 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNKGISPIYEP------GLEELLKENLASGRLRFTTD--- 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhCCCCCCcCc------cHHHHHHhccccCcEEEEcC---
Confidence 58999999999999999999999 99999998875444555555554321 133333332 1222111
Q ss_pred ceEEEecceeeccCEEEEccCC
Q 011535 96 GSSVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~ 117 (483)
........|.++||+|.
T Consensus 70 -----~~~a~~~adv~fIavgT 86 (414)
T COG1004 70 -----YEEAVKDADVVFIAVGT 86 (414)
T ss_pred -----HHHHHhcCCEEEEEcCC
Confidence 11223468999999997
No 300
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.86 E-value=0.00058 Score=62.42 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=24.1
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+|||+|++|+-+|..|.+ .+.+.|+|+.|+...
T Consensus 1 ~IIGaG~aGl~~a~~l~~--------------------~g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--------------------RGIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--------------------TT---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHh--------------------CCCCcEEEEeCCCCC
Confidence 699999999999999986 677669999998543
No 301
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.85 E-value=0.0013 Score=69.65 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=34.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
...+|+|||+|.|||.||..+++.+ .+|+|+||.+..+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G--~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAG--RRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CeEEEEEccCCCC
Confidence 4579999999999999999999998 9999999987654
No 302
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.85 E-value=0.0015 Score=69.67 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||+|.|||+||..+++.+ .+|+|+||.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G--~~V~lveK~~~~ 40 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAG--FKVAVISKVFPT 40 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCC--CcEEEEEccCCC
Confidence 3469999999999999999999998 999999998643
No 303
>PLN02976 amine oxidase
Probab=96.84 E-value=0.0014 Score=74.28 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=38.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|+++|..|.+.+ .+|+|||+.+.+||.+.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCcee
Confidence 4589999999999999999999998 99999999999988754
No 304
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.84 E-value=0.0013 Score=70.26 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+|||+|.||++||..+++.+ .+|+|+||.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G--~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 6999999999999999999999 999999998653
No 305
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0015 Score=69.74 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC------Cc-c-hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG------PT-G-IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g------~~-~-~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
...|+.+|.+++|+..+. ..+||+||+|.++.+ +. | .++.++..|+.+++++++.+...
T Consensus 507 T~GGl~in~~~qVLd~~g----~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~ 573 (584)
T PRK12835 507 TSGGLRTDEHARVLREDD----SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAA 573 (584)
T ss_pred cCcCccCCCCceEECCCC----CCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhc
Confidence 456888999999987654 589999999988632 11 2 35678999999999998886543
No 306
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.81 E-value=0.0015 Score=69.64 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||||.|||+||..+++.+++.+|+|+||.+..++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3589999999999999999998865589999999876443
No 307
>PRK12839 hypothetical protein; Provisional
Probab=96.80 E-value=0.0018 Score=68.93 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=35.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||+|.+|+++|..+++.+ .+|+|||+.+..+|
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg 45 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTCGG 45 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 34679999999999999999999999 99999999876654
No 308
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.0016 Score=70.29 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=33.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||+|.|||+||..+++.| .+|+|+|+.+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G--~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCC--CCEEEEeccCCC
Confidence 468999999999999999999999 999999998654
No 309
>PRK08275 putative oxidoreductase; Provisional
Probab=96.79 E-value=0.0017 Score=69.21 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=38.6
Q ss_pred CeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 366 G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
|.|.+|.. ++|++||+||+|+|+.........++-.|..++.+++.++...
T Consensus 357 Ggi~~d~~--~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 357 SGVWVNEK--AETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred CcEEECCC--CccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55777776 7899999999999964333333368889999999988887543
No 310
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.79 E-value=0.0016 Score=69.53 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.+++.+|+|+||.+..+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 358999999999999999999886558999999986543
No 311
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.78 E-value=0.0019 Score=63.76 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||.+|+++|..|.++| ++|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC--CeEEEEeeccc
Confidence 468999999999999999999999 99999998744
No 312
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.78 E-value=0.0052 Score=63.64 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||||..|+.+|..|.+.+ .+|+++++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCc
Confidence 4589999999999999999999999 89999998753
No 313
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.76 E-value=0.0018 Score=66.98 Aligned_cols=37 Identities=41% Similarity=0.518 Sum_probs=32.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|+|||+|.||++||..+++.+ ..+|+|+|+.+..+|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G-~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAG-AANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CccEEEEecCCCCCC
Confidence 6999999999999999999986 269999999977543
No 314
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.74 E-value=0.0019 Score=68.79 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC------C--cchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG------P--TGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g------~--~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
...|+.+|.+++|+..+. ..+||+||+|.++.+ + ...++.++..|+.+++++++.+...|
T Consensus 487 T~GGl~in~~~qVld~~g----~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~~ 554 (557)
T PRK12844 487 TSGGLLTDEHARVLREDG----SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSADP 554 (557)
T ss_pred ECCCccCCCCceEECCCC----CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCCC
Confidence 346888999999886654 588999999988632 1 22455789999999999988866553
No 315
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.013 Score=60.53 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|.+|+-+|..|.+ .+...+.|+.++..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~--------------------~g~~~~~i~Ek~~~ 43 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQ--------------------AGVPDFVIFEKRDD 43 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--------------------cCCCcEEEEEccCC
Confidence 34689999999999999999986 67666888888853
No 316
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.73 E-value=0.0037 Score=62.07 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=31.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....++|+|||||-++...+..|.+.++..+|+++-|.+.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 3467899999999999999999999987789999998864
No 317
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.69 E-value=0.002 Score=66.62 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCC-CeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~-~~v~lie~~~~~ 56 (483)
+|+|||||+||..+|..|++.++. ++|+|||+...+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 699999999999999999999865 899999988654
No 318
>PRK06847 hypothetical protein; Provisional
Probab=96.69 E-value=0.019 Score=57.92 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.++|+|||+|.+|+-+|..|.+ .+. +|+|+.++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR--------------------AGI-AVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCC
Confidence 4689999999999999999986 454 588888775
No 319
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.69 E-value=0.0024 Score=66.45 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
+...+|+|||||.+|.++|..|++..|+.+|+|+|+.+.++
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 34579999999999999999999997779999999955543
No 320
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.69 E-value=0.0024 Score=68.83 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...++|+|||||..|.++|+.|+++| ++|+|||+.+..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rG--l~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRG--LRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccCCC
Confidence 34589999999999999999999999 99999999865444
No 321
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.68 E-value=0.0021 Score=69.24 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.+ .+|+|+||.+..+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G--~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcC--CcEEEEEcCCCCC
Confidence 368999999999999999999998 9999999986543
No 322
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.68 E-value=0.0021 Score=68.97 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||||.|||+||..+++.+ .+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G--~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAG--LKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCC
Confidence 3579999999999999999999998 99999999864
No 323
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.67 E-value=0.0025 Score=68.25 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||+|.|||+||..+++.+ .+|+|+||.+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence 3569999999999999999999998 999999998654
No 324
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.0024 Score=68.34 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~g 57 (483)
...+|+|||||.|||+||..+++.++ +.+|+|+||.+..+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 34689999999999999999999863 37999999987544
No 325
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.65 E-value=0.0024 Score=66.86 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.+ . |+|+||.+..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G--~-V~lleK~~~~~ 37 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG--R-VIVLSKAPVTE 37 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC--C-EEEEEccCCCC
Confidence 358999999999999999999988 7 99999996543
No 326
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.65 E-value=0.0035 Score=65.75 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=34.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
++|+|||+||+|+.+|..|++.+ ++|.+||+....++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g--~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG--LKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC--CeEEEEeccCccCCC
Confidence 48999999999999999999999 999999999887653
No 327
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.65 E-value=0.034 Score=56.88 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.|++.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD--------------------SGL-RIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEecCCc
Confidence 3579999999999999999986 454 6899988754
No 328
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.64 E-value=0.0024 Score=65.58 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...+|+|||+|.+|+.+|..|++.| .+|.++|++++.||...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 3579999999999999999999999 99999999999998754
No 329
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.63 E-value=0.013 Score=58.08 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEE
Q 011535 260 RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVL 339 (483)
Q Consensus 260 r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi 339 (483)
.+.+.|.+.+. +.++.+++++.+..+. . +++.+. +.+.. ..+|+.+++.+|+||
T Consensus 112 ~l~~~L~~~~~---------~~gv~i~~~~~v~~~~--~-d~~~~~-~~~~~-------------~~~g~~~~i~adlvV 165 (356)
T PF01494_consen 112 ELDRALREEAE---------ERGVDIRFGTRVVSIE--Q-DDDGVT-VVVRD-------------GEDGEEETIEADLVV 165 (356)
T ss_dssp HHHHHHHHHHH---------HHTEEEEESEEEEEEE--E-ETTEEE-EEEEE-------------TCTCEEEEEEESEEE
T ss_pred HHHHhhhhhhh---------hhhhhheeeeeccccc--c-cccccc-ccccc-------------ccCCceeEEEEeeee
Confidence 34455555544 5679999999988886 3 233332 22221 114555689999999
Q ss_pred EeeecCC
Q 011535 340 KSIGYKS 346 (483)
Q Consensus 340 ~a~G~~~ 346 (483)
-|-|...
T Consensus 166 gADG~~S 172 (356)
T PF01494_consen 166 GADGAHS 172 (356)
T ss_dssp E-SGTT-
T ss_pred cccCccc
Confidence 9999875
No 330
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.0094 Score=61.83 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|+|+|.+|+.+|..|++.| ++|+++|+.+.. .+.....+ +...+++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~----------------~~~~~~~~-l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEED----------------QLKEALEE-LGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchH----------------HHHHHHHH-HHhcCCEEEeCCcch-
Confidence 4689999999999999999999999 999999986420 11111222 344466665544332
Q ss_pred EEEecceeeccCEEEEccCCC
Q 011535 98 SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.....+|.||+++|..
T Consensus 64 -----~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVP 79 (450)
T ss_pred -----hHhhcCCEEEECCCCC
Confidence 1223699999999973
No 331
>PRK07045 putative monooxygenase; Reviewed
Probab=96.61 E-value=0.024 Score=57.48 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
-+|+|||+|++|+-+|..|++ .|. +|+|+.|++..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA--------------------RGH-SVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh--------------------cCC-cEEEEeCCCcc
Confidence 479999999999999999986 455 58888877643
No 332
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.61 E-value=0.0025 Score=68.81 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||+|.|||+||..+++.+ .+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G--~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELG--YNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 469999999999999999999998 999999986543
No 333
>PRK12831 putative oxidoreductase; Provisional
Probab=96.60 E-value=0.016 Score=60.37 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||..|+.+|..|.+.+ .+|+++.+..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecC
Confidence 5689999999999999999999999 8899998764
No 334
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.60 E-value=0.0025 Score=68.48 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||.|||+||..+++.+++.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 4689999999999999999999822299999999864
No 335
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.60 E-value=0.0024 Score=65.72 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|.|||+||..+. .+ .+|+|+||.+..+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G--~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KD--LKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cC--CCEEEEecCCCCCC
Confidence 469999999999999999984 56 99999999876543
No 336
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.56 E-value=0.0028 Score=66.71 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|.||++||..+++ + .+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g--~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-E--YNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-C--CCEEEEeccCCCCC
Confidence 5699999999999999999976 7 99999999976544
No 337
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.56 E-value=0.0031 Score=67.11 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|||||+| +|++||..+++.+ .+|+|+||.+..||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcC
Confidence 46899999999 8999999999999 99999999987665
No 338
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.54 E-value=0.013 Score=59.58 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=76.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc------ccCCHHHHHHHhcCCC--
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ------AACTAKELREILGIKN-- 232 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~------~~f~~~el~~~~~~~~-- 232 (483)
.|+|||+|++|.-+|..|++ .| -+|.++.++.... ..++...+.++...+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~--------------------~G-~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~ 63 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAK--------------------AG-LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE 63 (396)
T ss_pred eEEEECCchHHHHHHHHHHH--------------------cC-CeEEEEecCCCCCCCccccceechhhHHHhCCCcchh
Confidence 69999999999999999986 56 5799999975432 2345556666655443
Q ss_pred eeEEeccccccCCCCcHHHhh-----c-cHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEE
Q 011535 233 LYVHIREDDLIKSPTDEEEMK-----N-SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306 (483)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~ 306 (483)
+...+....+... ....... . --.+.++.+.|.+.+. +.|.+++..+.+..+. .++++.+..
T Consensus 64 i~~~v~~~~~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~---------~aGae~~~~~~~~~~~--~~~~~~~~~ 131 (396)
T COG0644 64 IERKVTGARIYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAE---------EAGAELYPGTRVTGVI--REDDGVVVG 131 (396)
T ss_pred hheeeeeeEEEec-CCceEEecCCCceEEEEhHHhhHHHHHHHH---------HcCCEEEeceEEEEEE--EeCCcEEEE
Confidence 1222221111111 0000000 0 0013344555665554 6799999999998887 312332222
Q ss_pred EEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 307 v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+. .+. .++.++.||.|.|...
T Consensus 132 ~~------------------~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 132 VR------------------AGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred EE------------------cCC-EEEEcCEEEECCCcch
Confidence 11 111 4777888888887553
No 339
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.52 E-value=0.0032 Score=66.83 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||+|.||++||..+. .+ .+|+|+||.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G--~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SH--LRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cC--CCEEEEEccCCCCC
Confidence 4579999999999999999986 47 99999999976554
No 340
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.52 E-value=0.015 Score=59.59 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+-.|+.|.+ . ..+++++.|.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--------------------~-g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--------------------E-GHEVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--------------------C-CCCceEEEecCCc
Confidence 35789999999999999999986 3 3468888888643
No 341
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.51 E-value=0.0032 Score=68.20 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||.|||.||..+++.| .+|+|+|+.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G--~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRG--LDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcC--CCEEEEeCCCCC
Confidence 468999999999999999999998 999999988654
No 342
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.49 E-value=0.011 Score=54.26 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||..|...+..|.+.+ .+|+|+++... ..+..+....++.++.+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~--------------------~~l~~l~~~~~i~~~~~~~~-- 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELE--------------------SELTLLAEQGGITWLARCFD-- 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCC--------------------HHHHHHHHcCCEEEEeCCCC--
Confidence 4679999999999999999999999 99999986422 11223334445655443211
Q ss_pred EEEecceeeccCEEEEccCC
Q 011535 98 SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~ 117 (483)
. .....|+.||+|||-
T Consensus 64 ---~-~dl~~~~lVi~at~d 79 (205)
T TIGR01470 64 ---A-DILEGAFLVIAATDD 79 (205)
T ss_pred ---H-HHhCCcEEEEECCCC
Confidence 1 112368999999997
No 343
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.49 E-value=0.017 Score=57.90 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~ 54 (483)
.++|+|||+|+.|+.+|..|.+.+ .+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g--~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeecc
Confidence 479999999999999999999888 76 99998764
No 344
>PLN02815 L-aspartate oxidase
Probab=96.44 E-value=0.0039 Score=66.60 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=33.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||+|.|||+||..+++.+ +|+|+|+.+..+|
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G---~VvlleK~~~~gg 65 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG---TVAIITKDEPHES 65 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC---CEEEEECCCCCCC
Confidence 34579999999999999999999875 5999999876543
No 345
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.44 E-value=0.003 Score=67.72 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.5
Q ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
|+|||+|.|||+||..+++.+ .+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--YHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--CCEEEEEecCCC
Confidence 689999999999999999998 999999998743
No 346
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.41 E-value=0.0033 Score=61.25 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++++|||+|++|..+|.+|++.+ ..+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEccccC
Confidence 48999999999999999999974 4799999998753
No 347
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.40 E-value=0.0041 Score=71.79 Aligned_cols=39 Identities=36% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||+|.||++||..+++.| .+|+|+||.+..||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~G--a~VivlEK~~~~GG 446 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEccCCCCC
Confidence 3578999999999999999999999 99999999987665
No 348
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.39 E-value=0.015 Score=65.04 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|++|+.+|..|++ .| .+|+|+.+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--------------------~G-~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--------------------AG-HPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecccc
Confidence 57899999999999999999986 45 47999988754
No 349
>PLN02463 lycopene beta cyclase
Probab=96.38 E-value=0.034 Score=57.34 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=27.7
Q ss_pred CceeeeccCCCC--Cc--chhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 381 NGLYVCGWLKRG--PT--GIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 381 p~vya~Gd~~~g--~~--~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.++.++||.+.- |. ..+..++.+|..+|+.|.+.|..+.
T Consensus 294 ~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~ 336 (447)
T PLN02463 294 QRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSR 336 (447)
T ss_pred CCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888642 21 2334789999999999999887653
No 350
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.36 E-value=0.02 Score=60.46 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHh-cCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~-~~~v~~~~~~~v~ 96 (483)
..++|+|||||+.|+.+|..|+..+ .+|+|+++.+.+. +. ..+.+.+. ..|++++.++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~--~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gI~i~~~~~v~ 411 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIV--KHVTVLEFAPELK--------AD--------QVLQDKLRSLPNVTIITNAQTT 411 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEECcccc--------cc--------HHHHHHHhcCCCcEEEECcEEE
Confidence 4579999999999999999999998 9999999876531 11 11233333 3589998887652
Q ss_pred e---------EEEecc---e---eeccCEEEEccCCC
Q 011535 97 S---------SVSLSE---L---RQLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~---------~~~~~~---~---~~~yd~vvlAtG~~ 118 (483)
. .+.+.+ + ...+|.|++|+|..
T Consensus 412 ~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 412 EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 1 122221 1 24599999999983
No 351
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.36 E-value=0.01 Score=66.73 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|++ .| .+|+++.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--------------------~G-~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--------------------EG-FPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeeCCC
Confidence 57999999999999999999986 44 47999998753
No 352
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.35 E-value=0.0041 Score=66.08 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||+|.||++||..+ +.+ .+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G--~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERG--KNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcC--CCEEEEEccCC
Confidence 46999999999999999999 888 99999999864
No 353
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.32 E-value=0.022 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+-+|..|++ .+. +|+++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~--------------------~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD--------------------KGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccCC
Confidence 48999999999999999986 454 6999998854
No 354
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.32 E-value=0.0046 Score=66.16 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 376 SSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+|++||+||+|||+. ++.+..+.++.+|..++.++..++..
T Consensus 402 ~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 402 RMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred CccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence 6789999999999964 55666667888899999999888754
No 355
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.31 E-value=0.0053 Score=65.69 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||+|++|+.+|..+++.+ .+|+|+|+.+..||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcc
Confidence 3579999999999999999999999 9999999988776643
No 356
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.30 E-value=0.0025 Score=57.42 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=47.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~ 99 (483)
++|+|||.|+.|+.+|..|++.| ++|+-+|.++..-..+..|..|-+ ++ .+...+.+..+..++.+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~-E~-~l~~ll~~~~~~~~l~~t~~------- 69 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIY-EP-GLDELLKENVSAGRLRATTD------- 69 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS--CT-THHHHHHHHHHTTSEEEESE-------
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhcccccc-cc-chhhhhccccccccchhhhh-------
Confidence 58999999999999999999999 999999988754333444443332 11 23333444444444443221
Q ss_pred EecceeeccCEEEEccCC
Q 011535 100 SLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 100 ~~~~~~~~yd~vvlAtG~ 117 (483)
.......+|.++||.+.
T Consensus 70 -~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 70 -IEEAIKDADVVFICVPT 86 (185)
T ss_dssp -HHHHHHH-SEEEE----
T ss_pred -hhhhhhccceEEEecCC
Confidence 11112369999999997
No 357
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.28 E-value=0.016 Score=60.15 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..++|+|||+|+.|+.+|..|++ .....+|+|+.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~-------------------~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK-------------------AHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh-------------------hCCCCeEEEEecCCC
Confidence 56899999999999999999974 122358999998864
No 358
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.011 Score=61.44 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=52.2
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceEEE
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVS 100 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~ 100 (483)
+|+|||.|++|+++|..|.++| ++|+++|+.+.+. .+.+ ...+...|++++.+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~-------------~~~~----~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPE-------------LLER----QQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchh-------------hHHH----HHHHHHcCCEEEECCccchh-h
Confidence 6899999999999999999999 9999999876531 1111 12233457887765432100 0
Q ss_pred ecceeeccCEEEEccCCC
Q 011535 101 LSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 101 ~~~~~~~yd~vvlAtG~~ 118 (483)
.......+|.||++.|..
T Consensus 62 ~~~~~~~~d~vv~s~gi~ 79 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGIP 79 (459)
T ss_pred hhHHhhcCCEEEECCCCC
Confidence 001223589999999973
No 359
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.27 E-value=0.0058 Score=64.78 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||+|.||++||..+++. .+|+|+||.+..+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCCCC
Confidence 346999999999999999999874 89999999876443
No 360
>PRK06184 hypothetical protein; Provisional
Probab=96.26 E-value=0.046 Score=57.55 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|++ .|+ +|+|+.|++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~--------------------~Gi-~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELAR--------------------RGV-SFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 469999999999999999986 565 5888888753
No 361
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.25 E-value=0.029 Score=58.27 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..++|+|||+|..|+.+|..|.+.+ . +|+++++.+.. ..|.. .. ..+.++..|++++.+..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G--~~~Vtlv~~~~~~-------~~~~~--~~-----~~~~~~~~GV~i~~~~~ 333 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLG--AESVTIVYRRGRE-------EMPAS--EE-----EVEHAKEEGVEFEWLAA 333 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecCcc-------cCCCC--HH-----HHHHHHHCCCEEEecCC
Confidence 4689999999999999999999988 7 89999876431 11321 11 12334567888887754
No 362
>PRK06185 hypothetical protein; Provisional
Probab=96.25 E-value=0.05 Score=55.51 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=33.0
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
..++.++++..+.++. . +++.+.++.+.. .+...++.+|+||.|.|...
T Consensus 121 ~~~v~i~~~~~v~~~~--~-~~~~v~~v~~~~---------------~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 121 YPNFTLRMGAEVTGLI--E-EGGRVTGVRART---------------PDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred CCCcEEEeCCEEEEEE--E-eCCEEEEEEEEc---------------CCCcEEEEeCEEEECCCCch
Confidence 3579999999999887 3 355554444432 11114789999999999764
No 363
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.25 E-value=0.039 Score=56.10 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=28.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|++|+-+|..|++ .|. +|+|+.|++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL--------------------AGI-DSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh--------------------cCC-CEEEEEcCCc
Confidence 469999999999999999986 454 5888888764
No 364
>PRK11445 putative oxidoreductase; Provisional
Probab=96.24 E-value=0.067 Score=53.51 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.4
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ . -+|+++.|++.
T Consensus 3 dV~IvGaGpaGl~~A~~La~---------------------~-~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG---------------------K-MKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc---------------------c-CCEEEEECCCc
Confidence 69999999999999999986 3 47999998863
No 365
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.22 E-value=0.03 Score=56.85 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.|++
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~--------------------~G~-~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD--------------------AGL-SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEeCCC
Confidence 3579999999999999999986 555 589999875
No 366
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.20 E-value=0.0067 Score=64.10 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=34.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
....+|+|||||.|||.||..++..+ .+|+|+||.+..+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcC--CcEEEEEccccCC
Confidence 35679999999999999999999999 9999999987543
No 367
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.16 E-value=0.015 Score=56.16 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=67.8
Q ss_pred ccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 13 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
......++|++|||||+.++..|--++..+ .++.|+=|...+- -.+ .+.+.....+.+...|++++.+
T Consensus 183 f~Lee~Pkr~vvvGaGYIavE~Agi~~gLg--sethlfiR~~kvL--------R~F--D~~i~~~v~~~~~~~ginvh~~ 250 (478)
T KOG0405|consen 183 FDLEEQPKRVVVVGAGYIAVEFAGIFAGLG--SETHLFIRQEKVL--------RGF--DEMISDLVTEHLEGRGINVHKN 250 (478)
T ss_pred cchhhcCceEEEEccceEEEEhhhHHhhcC--CeeEEEEecchhh--------cch--hHHHHHHHHHHhhhcceeeccc
Confidence 345567899999999999999999999999 8888887765431 111 1234455667777789999998
Q ss_pred eEEceEEEecce----------eeccCEEEEccCCCCCCC
Q 011535 93 VTLGSSVSLSEL----------RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 93 ~~v~~~~~~~~~----------~~~yd~vvlAtG~~~~~~ 122 (483)
+.+...+...++ ....|.|+.|+|. .|..
T Consensus 251 s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR-~Pnt 289 (478)
T KOG0405|consen 251 SSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR-KPNT 289 (478)
T ss_pred ccceeeeecCCCceEEEEeccccccccEEEEEecC-CCCc
Confidence 776443322221 1348999999996 3443
No 368
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.14 E-value=0.027 Score=56.41 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=30.2
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
..++.+. ...+.++. . ++++|.+|... .+.++.+|.||+|||.
T Consensus 108 ~~nl~i~-~~~V~~l~--~-e~~~v~GV~~~------------------~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 108 HPNLTII-QGEVTDLI--V-ENGKVKGVVTK------------------DGEEIEADAVVLATGT 150 (392)
T ss_dssp STTEEEE-ES-EEEEE--E-CTTEEEEEEET------------------TSEEEEECEEEE-TTT
T ss_pred CCCeEEE-EcccceEE--e-cCCeEEEEEeC------------------CCCEEecCEEEEeccc
Confidence 5788885 56788886 3 46777776542 2358999999999997
No 369
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.12 E-value=0.046 Score=56.26 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=30.6
Q ss_pred cCceeeeccCCCC--C-----cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P-----TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~-----~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++++++||++.- | .|+. .|+..|..+|+.|.+.+..+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~-~A~~SG~lAAeai~~a~~~~ 338 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMD-LAIAAGEAAAKTVLSAMKSD 338 (428)
T ss_pred cCCeEEEecccccccccCceeeeHH-HHHHHHHHHHHHHHHHHhcC
Confidence 3789999999831 2 4565 89999999999999988754
No 370
>PRK05868 hypothetical protein; Validated
Probab=96.10 E-value=0.053 Score=54.73 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=28.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++|+|||+|.+|+-+|..|++ .|. +|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--------------------HGY-SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEcCCCC
Confidence 479999999999999999986 454 5888887753
No 371
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.09 E-value=0.035 Score=61.46 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~ 55 (483)
..++|+|||||..|+.+|..+.+.+ .+ |+++++.+.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtlv~r~~~ 605 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRSE 605 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--CCeEEEeeecCc
Confidence 4589999999999999999999998 76 999987653
No 372
>PRK10015 oxidoreductase; Provisional
Probab=96.09 E-value=0.045 Score=56.34 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=29.6
Q ss_pred cCceeeeccCCCC--C-----cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P-----TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~-----~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+++.++||++.- | .|+. .|+..|..+|+.|.+.+..+
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~-~A~~SG~~AAe~i~~a~~~~ 338 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMD-LAIASAQAAATTVIAAKERA 338 (429)
T ss_pred cCCeEEEecccccccccCccccchh-HHHHHHHHHHHHHHHHHhcC
Confidence 4689999998842 2 3555 89999999999999888743
No 373
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.09 E-value=0.044 Score=47.85 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=38.1
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc-cccCCHH-HHHHHhcCCCeeEEecc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV-QAACTAK-ELREILGIKNLYVHIRE 239 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~-~~~f~~~-el~~~~~~~~~~~~~~~ 239 (483)
+|||+|++|+-++..|.+.. .....-+|+|+.+++.- ...+... .-..++..+.-.+.+..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~----------------~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~ 63 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA----------------DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFP 63 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc----------------CCCCCCEEEEEcCCCccccccCCCCCChHHhhccccccccccc
Confidence 59999999999999998621 01234689999997553 2234333 33445555544444443
No 374
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.0073 Score=60.47 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|+|||||+||..||.+.++.| .+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~G--a~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLG--ARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcC--CceEEeecc
Confidence 45789999999999999999999999 999998766
No 375
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.06 E-value=0.037 Score=57.74 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ 56 (483)
..++|+|||+|+.|+.+|..+.+.+ . +|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~g--a~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQG--AKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEccccCCC
Confidence 4689999999999999999988887 5 78888766543
No 376
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.98 E-value=0.0092 Score=63.94 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCcccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcc-------hhHhhHHHHHHHHHHHHHHHh
Q 011535 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTG-------IIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 358 ~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~-------~~~~a~~~g~~~a~~I~~~l~ 416 (483)
.|+.+|.+|++.... .+++||+||+|+|+. +..| .+..++-.|+.++.++++++.
T Consensus 357 GGi~id~~~~v~~~~----~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 357 GGIPTTVDGEVLRDN----TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCeeECCCceEecCC----CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 466777777775443 278999999999964 4333 233678888899998887764
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.94 E-value=0.079 Score=53.74 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=27.8
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
.+|+|||+|++|+-+|..|.+ .| -+|+|+.++
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~--------------------~G-~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR--------------------AG-LDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEccC
Confidence 479999999999999999987 45 468888887
No 378
>PRK02106 choline dehydrogenase; Validated
Probab=95.94 E-value=0.0096 Score=63.57 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~ 55 (483)
...++||||||+||+.+|.+|++ .+ .+|+|+|+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g--~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPD--VSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCC--CeEEEecCCCc
Confidence 45799999999999999999999 56 99999999853
No 379
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.93 E-value=0.011 Score=61.15 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||||..|+.+|..++.+| ++|+|+|+.+...|
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsG 49 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASG 49 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCC--CeEEEEecCcccCc
Confidence 36789999999999999999999999 99999999986544
No 380
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.033 Score=58.31 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|||+|.+|+++|..|.+ .|. +|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--------------------~G~-~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--------------------LGA-RVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeCCc
Confidence 56899999999999999988875 454 688887664
No 381
>PRK07588 hypothetical protein; Provisional
Probab=95.87 E-value=0.12 Score=52.56 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=27.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||||.+|+-+|..|++ .|. +|+++.+++.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR--------------------YGH-EPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHH--------------------CCC-ceEEEeCCCC
Confidence 69999999999999999986 454 5888887754
No 382
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.86 E-value=0.05 Score=55.71 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCe
Q 011535 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGM 337 (483)
Q Consensus 258 ~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~ 337 (483)
-+.+.+.|.+... +.++++++++.+++++ . ++++|.++.+... .++....+.+..
T Consensus 140 g~~~~~~l~~~~~---------~~gv~i~~~~~~~~Li--~-e~g~V~Gv~~~~~-------------~~g~~~~i~A~a 194 (417)
T PF00890_consen 140 GKALIEALAKAAE---------EAGVDIRFNTRVTDLI--T-EDGRVTGVVAENP-------------ADGEFVRIKAKA 194 (417)
T ss_dssp HHHHHHHHHHHHH---------HTTEEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCEEEEEEESE
T ss_pred HHHHHHHHHHHHh---------hcCeeeeccceeeeEE--E-eCCceeEEEEEEC-------------CCCeEEEEeeeE
Confidence 3445556665554 6679999999999998 4 4789998887741 256667899999
Q ss_pred EEEeeecCC
Q 011535 338 VLKSIGYKS 346 (483)
Q Consensus 338 vi~a~G~~~ 346 (483)
||+|||--.
T Consensus 195 VIlAtGG~~ 203 (417)
T PF00890_consen 195 VILATGGFG 203 (417)
T ss_dssp EEE----BG
T ss_pred EEeccCccc
Confidence 999999544
No 383
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.86 E-value=0.011 Score=62.44 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||+|.|||+||..++ + .+|+|+|+.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~--~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--P--RPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--c--CCEEEEECCCC
Confidence 44679999999999999999996 4 69999999876
No 384
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.85 E-value=0.1 Score=55.47 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred cCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 011535 380 ENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 380 ~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~ 416 (483)
++|+|.+|-+ +|.+|-- .|..||-.++-|.+..+.
T Consensus 359 ~~~lf~AGQi-nGt~GYe-EaaaqGl~AgiNaa~~~~ 393 (618)
T PRK05192 359 IKGLFFAGQI-NGTTGYE-EAAAQGLIAGINAALKVQ 393 (618)
T ss_pred CCCeEECccc-CCChHHH-HHHHHHHHHHHHHHHHhc
Confidence 6888888887 6777777 789999999988888776
No 385
>PRK06126 hypothetical protein; Provisional
Probab=95.85 E-value=0.14 Score=54.41 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
..++++++++.++++. . +++.+. +.+.+. .+|+..++.+|+||.|.|...
T Consensus 139 ~~~v~i~~~~~v~~i~--~-~~~~v~-v~~~~~-------------~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 139 QPGVTLRYGHRLTDFE--Q-DADGVT-ATVEDL-------------DGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CCCceEEeccEEEEEE--E-CCCeEE-EEEEEC-------------CCCcEEEEEEEEEEecCCcch
Confidence 3579999999999997 4 344343 333221 134445789999999999764
No 386
>PLN02697 lycopene epsilon cyclase
Probab=95.84 E-value=0.07 Score=56.17 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.7
Q ss_pred CceeeeccCCCC--Cc--chhHhhHHHHHHHHHHHHHHHhcC
Q 011535 381 NGLYVCGWLKRG--PT--GIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 381 p~vya~Gd~~~g--~~--~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+++.++||.+.- |. ..+..++..|..+|+.|++.+...
T Consensus 372 ~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 372 QKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNV 413 (529)
T ss_pred CCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence 457788888742 22 223367899999999999988754
No 387
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.039 Score=52.19 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC-----CCCeEEEEecCCC-------CCCceecccCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH-----QEAQVDIIDRLPT-------PFGLVRSGVAP 66 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~-----~~~~v~lie~~~~-------~ggl~~~g~~p 66 (483)
..++|+|||+|..||++|..+.+.. |..+|++++..+. +.|+++....+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~ 62 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD 62 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC
Confidence 4679999999999999998888733 7799999987765 34666654433
No 388
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.83 E-value=0.15 Score=51.92 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++|+|||+|.+|+-+|..|.+ .|. +|+|+.|++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--------------------~G~-~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--------------------RGW-AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 689999999999999999986 454 5888887753
No 389
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.81 E-value=0.0099 Score=61.18 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=0.0
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+.+++++.+.++. . ++++|.+|.+... .| ..++.++.+|-|||.
T Consensus 102 e~gv~v~~~t~v~~v~--~-~~~~i~~V~~~~~--------------~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 102 EAGVEVLLGTRVVDVI--R-DGGRITGVIVETK--------------SG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccccccccccccc--c-ccccccccccccc--------------cc-ccccccccccccccc
Confidence 6799999999999998 5 4678888877642 22 468999999999994
No 390
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.051 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.3
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
-.|+|||+|+.|+-+|-.+.+
T Consensus 4 ~DviIIG~GPAGl~AAiya~r 24 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAAR 24 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHH
Confidence 479999999999999999986
No 391
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.81 E-value=0.049 Score=58.08 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=45.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. .. ... ..+.....+++++.++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g--~~Vtli~~~~~~~--------~~----~~~---~~~~~~~~gV~i~~~~~V 202 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYA--SKVTVIVREPDFT--------CA----KLI---AEKVKNHPKIEVKFNTEL 202 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccC--CEEEEEEeCCccc--------cC----HHH---HHHHHhCCCcEEEeCCEE
Confidence 4689999999999999999999988 9999999876420 11 111 122334568999888765
No 392
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.79 E-value=0.022 Score=59.34 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|.+ .+. +|+++.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--------------------~G~-~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--------------------AGV-QVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCCC
Confidence 57899999999999999999885 454 6899887754
No 393
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.78 E-value=0.13 Score=53.01 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=36.1
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. .++++++.++.+... .+....+.++.||+|+|-
T Consensus 142 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~~--------------~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLI--QDDQGTVVGVVVKGK--------------GKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HcCCEEEeCCEeeEeE--ECCCCcEEEEEEEeC--------------CCeEEEEecceEEEecCC
Confidence 6789999999999997 323567877765431 233346899999999993
No 394
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.092 Score=53.32 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc--ccCCHHHHHHHhcCCCeeEEe
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ--AACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~--~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+|+|||+|.+|+.+|..|++... ....|+|+..++.+. .+|+..+-..++.++..++.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~------------------~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~ 63 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPR------------------PSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSA 63 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------------------CCCceEEeccccccCCCccCCCCCchhhhccccccccc
Confidence 479999999999999999997321 222388888886542 456655544455555444444
Q ss_pred c
Q 011535 238 R 238 (483)
Q Consensus 238 ~ 238 (483)
.
T Consensus 64 ~ 64 (474)
T COG4529 64 F 64 (474)
T ss_pred c
Confidence 3
No 395
>PRK08244 hypothetical protein; Provisional
Probab=95.76 E-value=0.11 Score=54.54 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=26.6
Q ss_pred CceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+|+.+||+++. | .|.- .++.+|..++..|...+.+
T Consensus 272 gRv~L~GDAAH~~~P~~GqG~n-~gi~DA~~La~~La~~l~g 312 (493)
T PRK08244 272 GRIFLAGDAAHIHFPAGGQGLN-VGLQDAMNLGWKLAAAIKG 312 (493)
T ss_pred CcEEEeecceeccCCccccccc-cchhhHHHHHHHHHHHHcC
Confidence 479999999852 2 3444 6888888888888877754
No 396
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.71 E-value=0.011 Score=66.55 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.|.|.+|.. ++|++||+||+|||+.++.+.+..++-.|+.++.++..++..
T Consensus 361 ~GGi~vd~~--~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDEH--ARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecCC--CcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence 377788877 789999999999998765555547899999999999887653
No 397
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.71 E-value=0.11 Score=55.15 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=28.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|++|+-+|..|.+ .|. +|+|+.|+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~--------------------~G~-~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQ--------------------YGV-RVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCC
Confidence 3579999999999999999986 454 688888885
No 398
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.61 E-value=0.13 Score=51.74 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=39.5
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l 415 (483)
++.+++. ++|+++|+|++||++....|+. .|..+|..+|..|+...
T Consensus 438 ri~~d~~--~~t~i~gLy~aGdGAG~argI~-~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 438 RIKVDED--LSTSIKGLYPAGDGAGLARGIV-SAAADGIKAAEGIARKY 483 (486)
T ss_pred eEeeccc--ceeeecceEEccccccccchhH-HHhhhhHHHHHHHHHHh
Confidence 4566665 8899999999999988788887 79999999999998865
No 399
>PRK09126 hypothetical protein; Provisional
Probab=95.59 E-value=0.074 Score=53.96 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=28.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--------------------SGL-KVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEeCCCc
Confidence 369999999999999999986 454 6888888754
No 400
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=95.59 E-value=0.016 Score=56.64 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...+|+|||||.+|-+.|..|+|.| .+|++|||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdG--RrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDG--RRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCC--cEEEEEecc
Confidence 4578999999999999999999999 999999998
No 401
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.58 E-value=0.032 Score=60.52 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|++ .|. +|+++.+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--------------------~G~-~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--------------------AGV-QVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--------------------cCC-cEEEEeCCCC
Confidence 57999999999999999999986 454 6999988764
No 402
>PRK07538 hypothetical protein; Provisional
Probab=95.56 E-value=0.11 Score=53.22 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=27.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+-+|..|.+ .|. +|+|+.|+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--------------------RGI-EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEcCCc
Confidence 69999999999999999986 455 5888888753
No 403
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.55 E-value=0.053 Score=53.80 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=29.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+.|+.+++++.+.++. . +++++.+|+. .++ ++.+|.||+|+|.....
T Consensus 159 ~~Gv~i~~~~~V~~i~--~-~~~~v~gv~~------------------~~g-~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSID--V-DGGRVTGVRT------------------SDG-EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HTT-EEEESEEEEEEE--E-ETTEEEEEEE------------------TTE-EEEECEEEE--GGGHHH
T ss_pred Hhhhhccccccccchh--h-cccccccccc------------------ccc-ccccceeEeccccccee
Confidence 4578888888888876 3 3455444443 333 49999999999986543
No 404
>PRK07236 hypothetical protein; Provisional
Probab=95.54 E-value=0.15 Score=51.62 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|.+|+.+|..|.+ .|. +|+|+.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--------------------AGW-DVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 34689999999999999999986 454 6899998753
No 405
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.52 E-value=0.19 Score=52.99 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=38.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee-cCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG-YKSV 347 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G-~~~~ 347 (483)
+.++++++++.+.++. . ++++|.++.+... +++..++.++.||+|+| |.++
T Consensus 202 ~~gv~i~~~t~v~~l~--~-~~g~V~Gv~~~~~--------------~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 202 ERKIPLFVNADVTKIT--E-KDGKVTGVKVKIN--------------GKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HcCCeEEeCCeeEEEE--e-cCCEEEEEEEEeC--------------CCeEEEEecCeEEEeCCCcccC
Confidence 6689999999999997 4 4677877765431 23445799999999998 6654
No 406
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.51 E-value=0.14 Score=52.27 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=18.8
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~ 21 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ 21 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH
Confidence 69999999999999999986
No 407
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.49 E-value=0.086 Score=53.67 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=27.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ .+ .-+|+|+.+++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~--------------------~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ--------------------AAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCc
Confidence 59999999999999999986 33 247888888753
No 408
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.49 E-value=0.15 Score=52.03 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=29.9
Q ss_pred cCceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+++..+||++.- | .|+. .|+..|..+|+.|.+.+..+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~-~A~~sg~~aa~~i~~~~~~~ 311 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIY-FAAKSGRMCAEAIVEESRLG 311 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchH-HHHHHHHHHHHHHHHHHhcC
Confidence 3689999999852 2 3565 89999999999999887643
No 409
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.46 E-value=0.15 Score=54.23 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=35.5
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.++.+. . +++++.++++.+. .+++..++.|+.||.|+|.-.
T Consensus 161 ~~Ga~i~~~t~V~~i~--~-~~~~v~gv~v~d~-------------~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 161 EHGAQILTYHEVTGLI--R-EGDTVCGVRVRDH-------------LTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred hCCCEEEeccEEEEEE--E-cCCeEEEEEEEEc-------------CCCcEEEEECCEEEECCChhH
Confidence 5688888888888876 3 3556666665431 134445899999999999643
No 410
>PRK06753 hypothetical protein; Provisional
Probab=95.43 E-value=0.17 Score=50.96 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.9
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||||.+|+-+|..|++ .|. +|+|+.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--------------------QGH-EVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 69999999999999999986 454 5888888864
No 411
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.43 E-value=0.048 Score=57.52 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
-..|+|+|||+|.+|.-.|..|++.. .+|++.-|.+
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~~a--~~v~~s~R~~ 216 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSRVA--KKVYLSTRRG 216 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTTTS--CCEEEECC--
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHHhc--CCeEEEEecc
Confidence 46799999999999999999999987 7888887774
No 412
>PRK06834 hypothetical protein; Provisional
Probab=95.42 E-value=0.17 Score=52.96 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=28.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..|+|||+|++|+-+|..|.+ .|. +|+++.|+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~--------------------~G~-~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELAL--------------------AGV-DVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCC
Confidence 479999999999999999986 454 588888875
No 413
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.39 E-value=0.25 Score=51.47 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=35.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. . +++++.++.... .+++...+.++.||+|+|-
T Consensus 143 ~~gv~i~~~t~v~~l~--~-~~g~v~gv~~~~--------------~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 143 RLGVEIRYDAPVTALE--L-DDGRFVGARAGS--------------AAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HCCCEEEcCCEEEEEE--e-cCCeEEEEEEEc--------------cCCceEEEECCEEEECCCC
Confidence 6689999999999987 4 467777766532 1344457899999999983
No 414
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.39 E-value=0.17 Score=51.56 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
.+|+|||+|++|+-+|..|.+ .|. +|+++.++
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~--------------------~G~-~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE--------------------SDL-RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence 479999999999999999986 454 58888886
No 415
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.38 E-value=0.15 Score=51.90 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=27.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+|+|||+|.+|+-+|..|.+ .|. +|+|+.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG--------------------SGL-EVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhc--------------------CCC-EEEEEcCCC
Confidence 69999999999999999986 454 688888775
No 416
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.36 E-value=0.059 Score=56.41 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|++|+.+|..|.+ .+ .+|+++.+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--------------------~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--------------------AG-HTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecCCC
Confidence 46899999999999999999986 44 46999987754
No 417
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.36 E-value=0.24 Score=52.79 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|++|+-+|..|.+ .|. +|+++.++.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~--------------------~G~-~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ--------------------QGV-PVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEeCCC
Confidence 3579999999999999999986 454 588888775
No 418
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.33 E-value=0.0095 Score=55.97 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=35.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~gg 58 (483)
.+.++|+|||||..|..+|++|++++ ..+.|+|||.....+|
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 35689999999999999999999986 3589999998866544
No 419
>PRK09897 hypothetical protein; Provisional
Probab=95.30 E-value=0.19 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
++|+|||+|++|+-+|..|.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~ 22 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQ 22 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 479999999999999999985
No 420
>PRK06996 hypothetical protein; Provisional
Probab=95.19 E-value=0.23 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCeEEEEcCCchHHHHHHHHhc
Q 011535 159 TDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
..+|+|||||++|+-+|..|++
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~ 32 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLAR 32 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhc
Confidence 3579999999999999999986
No 421
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.17 E-value=0.28 Score=49.79 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=29.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|.+ .|. +|+|+.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~--------------------~g~-~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR--------------------QGI-KVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEeeCcc
Confidence 4689999999999999999986 454 6888888754
No 422
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.17 E-value=0.14 Score=51.71 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=28.0
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~--------------------~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--------------------SGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--------------------CCC-EEEEEeCCCc
Confidence 48999999999999999986 454 7999998864
No 423
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.16 E-value=0.07 Score=59.99 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||||+.|+.+|..|++ .+ .+|+|+.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--------------------~G-~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--------------------AG-HPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecccc
Confidence 46799999999999999999986 45 47999988754
No 424
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.16 E-value=0.038 Score=56.91 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+.+|..|++ +.+ .+|+|+.+.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~-------------------~~g-~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLK-------------------HER-VKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-------------------hcC-CeEEEEecCCCC
Confidence 56899999999999999998764 123 469999988643
No 425
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.16 E-value=0.2 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.|+|||+|++|+-+|..|++ .+ .+|.|+.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~--------------------~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--------------------PG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEccCCC
Confidence 48999999999999999875 34 47999998753
No 426
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.15 E-value=0.026 Score=45.52 Aligned_cols=34 Identities=38% Similarity=0.443 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+.++|+|||||..|..-+..|.+.+ .+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCc
Confidence 5789999999999999999999999 999999865
No 427
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.12 E-value=0.27 Score=49.76 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=28.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|++|+-+|..|++ .|. +|+++.|+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ--------------------SGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEecCCC
Confidence 479999999999999999986 454 6999988754
No 428
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.10 E-value=0.058 Score=61.37 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|++|+.+|..|++ .+ .+|+|+.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--------------------~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--------------------YG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCC
Confidence 46899999999999999999986 44 47999987754
No 429
>PRK07190 hypothetical protein; Provisional
Probab=95.10 E-value=0.23 Score=51.99 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=28.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-.|+|||+|++|+-+|..|.+ .|+ +|.|+.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar--------------------~Gi-~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL--------------------CGL-NTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeCCCc
Confidence 479999999999999998886 455 4888888753
No 430
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.09 E-value=0.19 Score=51.18 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEcCCchHHHHHHHHhc
Q 011535 163 VILGQGNVALDVARILLR 180 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~ 180 (483)
+|||+|++|+-+|..+++
T Consensus 1 vIIGgG~aGl~aAi~aa~ 18 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR 18 (400)
T ss_pred CEEEEeHHHHHHHHHHHh
Confidence 599999999999999986
No 431
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.05 E-value=0.033 Score=56.82 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=37.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~ 60 (483)
.++.=|||+|.|+|+||.+|.+-+ |+-+|+|+|+.+.+||-+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 467889999999999999999987 889999999999888754
No 432
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.027 Score=58.03 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=40.0
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~ 64 (483)
+.....+++|||||-+|-..+..+.+...-..|-++|.++..-|.--.|+
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred cccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 34456899999999999999999998765457888899988766666664
No 433
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.94 E-value=0.21 Score=50.73 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=28.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|.+ .|. +|+|+.+++.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 479999999999999999986 454 5888888763
No 434
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.92 E-value=0.024 Score=56.57 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
+..++++|||+|+-||.||.+|++.+ .+|.++|+....||-
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g--~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGA 52 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcC--cceEEEEEeeecCcc
Confidence 56789999999999999999999999 999999999766654
No 435
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.91 E-value=0.23 Score=50.34 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
-.++++|||||.+|++.|..|++ .|. +|+++.+.+.+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--------------------~G~-~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--------------------MGF-KVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--------------------cCC-eEEEEecCCccc
Confidence 35789999999999999999997 666 588998887554
No 436
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.88 E-value=0.24 Score=50.14 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=18.8
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|++|+-+|..|++
T Consensus 5 dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred cEEEECcCHHHHHHHHHHHh
Confidence 69999999999999999986
No 437
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.87 E-value=0.42 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.2
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
-+|+|||+|++|+-+|..|++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhh
Confidence 469999999999999999986
No 438
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=94.87 E-value=0.24 Score=50.18 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.0
Q ss_pred CceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+++.+||++.. | .|+. .|+..|..+|+.|.+.+..
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~-~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIY-FAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred CCEEEEeccccCcCCcccccHH-HHHHHHHHHHHHHHHHHhc
Confidence 569999999852 2 4555 8999999999999988864
No 439
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.86 E-value=0.088 Score=53.85 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||||..|--||..++-+| +++.|+|+.+...|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhccc--ceeEEEecccccCCcc
Confidence 3489999999999999999999999 9999999998765543
No 440
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.85 E-value=0.19 Score=54.77 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
..++|+|||||..|+.+|..+.+.+ . +|+++.+.+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~g--a~~Vt~i~~~~~ 503 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHG--ASNVTCAYRRDE 503 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CCeEEEeEecCC
Confidence 4579999999999999999999988 6 6999887643
No 441
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.84 E-value=0.19 Score=54.67 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...++|+|||||..|+.+|..+.+.+ . +|+|+.+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~G--a~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLG--AESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 35689999999999999999999987 6 699998765
No 442
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=94.83 E-value=0.025 Score=53.90 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+++||||||..|++.|.+|.-+.|..+|.|+|+...
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 3456899999999999999999999988899999999854
No 443
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.81 E-value=0.37 Score=48.83 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
-+|+|||+|.+|+-+|..|++ .|. +|+++.+..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~--------------------~G~-~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ--------------------HGF-SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEcCCC
Confidence 479999999999999999986 444 688888764
No 444
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.81 E-value=0.036 Score=52.95 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=33.2
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.|+|||+|.|||+|+..+...+ -.|+|+|+....||
T Consensus 11 pvvVIGgGLAGLsasn~iin~g--g~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKG--GIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcC--CeEEEEeccCCcCC
Confidence 7999999999999999999998 67999999987776
No 445
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.79 E-value=0.025 Score=58.28 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-C-------cchhHhhHHHHHHHHHHHHHH
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-P-------TGIIATNLYCAEETVASISED 414 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~-------~~~~~~a~~~g~~~a~~I~~~ 414 (483)
...|+.+|.+++|+..+. ..+||+||+|.++.| . ...+..++.-|+.+++++++.
T Consensus 367 T~GGl~id~~~~Vl~~~g----~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 367 TRYGLVVDATARVRLNDA----VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred eccceEECCCceEECCCC----CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 345888999999986543 578999999987532 1 112346788899999988765
No 446
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.74 E-value=0.38 Score=48.54 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=27.6
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.|+|||+|++|+-+|..|++ .|.-+|+++.|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--------------------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCceEEEEeCCCc
Confidence 48999999999999999986 45136888888753
No 447
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.70 E-value=0.044 Score=47.90 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+|+|||||..|.++|..|++++ .+|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccH
Confidence 6899999999999999999999 9999998764
No 448
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=94.63 E-value=0.33 Score=51.59 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.5
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
.|+|||+|.+|+++|..+++
T Consensus 2 DViVIGaG~AGl~aA~ala~ 21 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR 21 (617)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 48999999999999999986
No 449
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.62 E-value=0.18 Score=57.58 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|.+.+ .+ |+|+|..+... ..+.+.++..+++++.++.+.
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G--~~vV~vv~~~~~~~------------------~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAG--IAVVAIIDARADVS------------------PEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEccCcchh------------------HHHHHHHHHcCCEEEcCCeEE
Confidence 3589999999999999999999998 64 78888764320 123345567789998887652
Q ss_pred e--------EEEec----c-eeeccCEEEEccCCC
Q 011535 97 S--------SVSLS----E-LRQLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~--------~~~~~----~-~~~~yd~vvlAtG~~ 118 (483)
. .+.+. + ....+|.|+++.|..
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 1 12222 1 123599999999983
No 450
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.61 E-value=0.066 Score=51.46 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||+|.|||-+|..|+..+ .+|+|+|....
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcC--ceEEEEccccc
Confidence 3578999999999999999999999 99999998753
No 451
>PLN02785 Protein HOTHEAD
Probab=94.59 E-value=0.05 Score=58.19 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++++|||||.||+.+|.+|.+ . .+|+|+|+.+.+
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~--~~VLllE~G~~~ 89 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-N--FSVLLLERGGVP 89 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-C--CcEEEEecCCCC
Confidence 35899999999999999999999 5 999999998754
No 452
>PLN02985 squalene monooxygenase
Probab=94.59 E-value=0.28 Score=51.69 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|.+|+-+|..|++ .| .+|+++.|..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~--------------------~G-~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAK--------------------DG-RRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEECcC
Confidence 4579999999999999999986 34 4789998874
No 453
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.029 Score=53.94 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=66.7
Q ss_pred hhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeE
Q 011535 9 SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 9 ~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~ 88 (483)
+....+.+..+-+-+|||||+.+|.||-.|.-.+ .+|++.=|+-.. -++ ..++.+.+.+.+...|++
T Consensus 188 SDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg--~~vtVmVRSI~L---------rGF--Dqdmae~v~~~m~~~Gik 254 (503)
T KOG4716|consen 188 SDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFG--YDVTVMVRSILL---------RGF--DQDMAELVAEHMEERGIK 254 (503)
T ss_pred ccccccccCCCCceEEEccceeeeehhhhHhhcC--CCcEEEEEEeec---------ccc--cHHHHHHHHHHHHHhCCc
Confidence 3344556667788999999999999999999999 888887665322 121 236777777888888999
Q ss_pred EEeCeEEceE---------------EEecceeeccCEEEEccCC
Q 011535 89 FFGNVTLGSS---------------VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 89 ~~~~~~v~~~---------------~~~~~~~~~yd~vvlAtG~ 117 (483)
|...++..+. .+..+....||.|+.|.|.
T Consensus 255 f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 255 FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 9877543211 0111223459999999996
No 454
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.50 E-value=0.067 Score=46.75 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
.-..++|+|||||..|..-+..|.+.+ .+|+||++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcC
Confidence 346789999999999999999999999 99999953
No 455
>PRK08013 oxidoreductase; Provisional
Probab=94.45 E-value=0.39 Score=48.91 Aligned_cols=34 Identities=38% Similarity=0.433 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|++|+-+|..|++ .|. +|+|+.+++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~--------------------~G~-~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG--------------------SGL-RVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh--------------------CCC-EEEEEeCCCC
Confidence 469999999999999999986 454 6888888754
No 456
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.043 Score=52.69 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+...|-|||||.||-.||++++++| +.|.|+|..|.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcC--CcEEEEEccccc
Confidence 3467999999999999999999999 999999988753
No 457
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.39 E-value=0.58 Score=50.74 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=37.2
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.+|++++++.+.+++ . ++++|.++...+. .++....+.++.||+|||-
T Consensus 182 ~~gV~i~~~t~v~~Li--~-d~g~V~GV~~~~~-------------~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 182 AGTVKMYTRTEMLDLV--V-VDGRARGIVARNL-------------VTGEIERHTADAVVLATGG 230 (640)
T ss_pred hcCCEEEeceEEEEEE--E-eCCEEEEEEEEEC-------------CCCcEEEEECCEEEECCCC
Confidence 5689999999999987 4 3678888766431 1344567999999999995
No 458
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.36 E-value=0.44 Score=49.32 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=29.3
Q ss_pred cCceeeeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 380 ENGLYVCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 380 ~p~vya~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.++++.+||++.. -.|+. .|+..|..+|+.|.+.++.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~-~Am~sg~~AAe~i~~~~~~ 349 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIY-FAAKSGRMCAEAIVEGSEN 349 (450)
T ss_pred CCCcEEEeccccCCCccccccHH-HHHHHHHHHHHHHHHHHhc
Confidence 4578899999852 24566 8999999999999988764
No 459
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.31 E-value=0.39 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=28.1
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|..|+-+|..|.+ .+.-+|+|+.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--------------------~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--------------------HSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cCCCCEEEEecCCc
Confidence 69999999999999999986 44336889888754
No 460
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.23 E-value=0.12 Score=49.13 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=31.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
...+|+|||+|-.|-++|..|++.| + +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G--Vg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG--IGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC--CCEEEEEeCCEe
Confidence 4679999999999999999999998 5 8999997743
No 461
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.20 E-value=0.045 Score=58.08 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++|||||.||+.+|.+|++.+ ..+|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCCC
Confidence 5899999999999999999874 469999999864
No 462
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.10 E-value=0.38 Score=48.68 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|.+ .|. +|+|+.+...
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~--------------------~G~-~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR--------------------AGA-SVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc--------------------CCC-eEEEEeCCCC
Confidence 479999999999999999986 454 6889988753
No 463
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.07 E-value=0.057 Score=57.24 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....++||||+|.||..+|..|+..+ .+|+|+|..+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g--~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAG--LSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCC--CeEEEEeCCCC
Confidence 35689999999999999999999666 99999999864
No 464
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.03 E-value=0.55 Score=47.34 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.7
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||||.+|+-+|..|++
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 69999999999999999986
No 465
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.02 E-value=0.13 Score=54.63 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=63.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc-
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~- 96 (483)
+.++-+|||||.=|+.+|..|...+ .+++++.-.+.+ |...+ ...--..+...+++.|++|+++....
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~G--m~~~Vvh~~~~l---MerQL------D~~ag~lL~~~le~~Gi~~~l~~~t~e 212 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLG--MEVTVVHIAPTL---MERQL------DRTAGRLLRRKLEDLGIKVLLEKNTEE 212 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCC--CceEEEeecchH---HHHhh------hhHHHHHHHHHHHhhcceeecccchhh
Confidence 4566899999999999999999999 999999755432 11111 11223346666777899998876542
Q ss_pred -------eEEEecceee-ccCEEEEccCCCCCC
Q 011535 97 -------SSVSLSELRQ-LYHVVVLAYGAESDR 121 (483)
Q Consensus 97 -------~~~~~~~~~~-~yd~vvlAtG~~~~~ 121 (483)
..+.++++.. .+|.||.|+|. .|+
T Consensus 213 i~g~~~~~~vr~~DG~~i~ad~VV~a~GI-rPn 244 (793)
T COG1251 213 IVGEDKVEGVRFADGTEIPADLVVMAVGI-RPN 244 (793)
T ss_pred hhcCcceeeEeecCCCcccceeEEEeccc-ccc
Confidence 1244455543 59999999998 444
No 466
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.94 E-value=0.076 Score=49.44 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++++|||+|..|.+.|..|.+.| .+|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCH
Confidence 58999999999999999999999 9999999874
No 467
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.83 E-value=0.11 Score=53.84 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+|||.|+.|+.+|..|++++.+++|+.+|.++..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 5899999999999999999998655889999988653
No 468
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.80 E-value=0.68 Score=48.57 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=34.4
Q ss_pred ceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecC
Q 011535 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 345 (483)
.+|++++++.+.++. . +++++.++.... .+....+.++.||+|+|--
T Consensus 142 ~gi~i~~~~~v~~l~--~-~~g~v~Gv~~~~---------------~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 142 PNIRIIEGENALDLL--I-ETGRVVGVWVWN---------------RETVETCHADAVVLATGGA 188 (488)
T ss_pred CCcEEEECeEeeeee--c-cCCEEEEEEEEE---------------CCcEEEEEcCEEEECCCcc
Confidence 589999999999987 4 356777665543 1223478999999999953
No 469
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.79 E-value=0.11 Score=47.54 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
-..++|+|||||-.|...+..|.+.+ .+|+|+++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcC
Confidence 35789999999999999999999999 99999975
No 470
>PRK13984 putative oxidoreductase; Provisional
Probab=93.75 E-value=0.16 Score=54.78 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|.+ .+. +|+++.+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--------------------~G~-~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--------------------MGY-EVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence 67899999999999999999986 454 6999987754
No 471
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.73 E-value=0.22 Score=55.48 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|||+|+.|+.+|..|+. .| .+|+++.+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--------------------~G-h~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--------------------SG-HNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEcccc
Confidence 68999999999999999999986 34 5799998763
No 472
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=93.66 E-value=0.49 Score=47.77 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=27.5
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.|+|||+|++|+-+|..|.+ .....+|.+|.+....
T Consensus 1 DviIvGaGpAGlslA~~l~~-------------------~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLAD-------------------ARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHh-------------------cCCCCEEEEEcCCccc
Confidence 38999999999999999933 1234689999876543
No 473
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.47 E-value=0.17 Score=54.18 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+++|+|||+|++|+-+|..|.+ .|. +|+++.+...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--------------------~G~-~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--------------------MGH-AVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence 368999999999999999999886 565 5999987754
No 474
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.43 E-value=0.1 Score=46.74 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=28.6
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|.|||+|.-|...|..++..| ++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence 5899999999999999999999 99999998753
No 475
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.43 E-value=0.16 Score=43.06 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~ 53 (483)
...++++|||+|-+|-.++.+|...+ .+ |+|+.|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALG--AKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 35789999999999999999999998 75 9999875
No 476
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.41 E-value=0.1 Score=51.64 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~ 53 (483)
..++|+|+||||+|++.|..|.... .+.+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 4689999999999999999998554 36799999987
No 477
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.25 E-value=0.34 Score=41.51 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
+|+|||.|-.|-.+|..|.+.| + +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G--v~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG--VGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCC
Confidence 5899999999999999999999 6 799999774
No 478
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=93.17 E-value=0.46 Score=50.06 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~ 53 (483)
..-+++|||||-+|.++|++|++.+ .+ .++.|+.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g--~k~avlle~~ 72 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRG--MKGAVLLERS 72 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHcc--ccceEEEeee
Confidence 4568999999999999999999999 77 4444544
No 479
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.08 E-value=0.38 Score=53.44 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 154 PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 154 ~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+..+.+++|+|||.|++|+-+|..|.+ -...|++..|++..
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk---------------------~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNK---------------------AGHTVTVYERSDRV 1820 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhh---------------------cCcEEEEEEecCCc
Confidence 344578999999999999999999986 33579999998754
No 480
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=93.02 E-value=0.48 Score=47.74 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.|+|||+|..|+.+|..|.+ .....+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~-------------------~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQR-------------------ARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHh-------------------cCCCCeEEEEeCCC
Confidence 38999999999999999985 11234688888875
No 481
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.98 E-value=0.16 Score=51.53 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
...+||+||||..|-+.+..|.+..|+.+|.|+||.+.+.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 4579999999999999999999999999999999997654
No 482
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.93 E-value=0.18 Score=44.54 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=30.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+.+|+|+|+|.+|..|+..|...+ ++++++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCH
Confidence 4689999999999999999999999 9999999764
No 483
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=92.85 E-value=0.22 Score=48.14 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~ 55 (483)
..-+|+|||||-.|.+.|..|.++. .+++|+++|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 3568999999999999999998764 3499999999864
No 484
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.77 E-value=0.19 Score=42.70 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++++|||+|-+|--++..|.. .++++|+++.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--------------------~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--------------------LGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--------------------TTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--------------------cCCCEEEEEECCH
Confidence 68999999999999999999986 7999999999973
No 485
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=92.69 E-value=1.6 Score=47.21 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=36.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
+.||+++.++.+.+++ .++++++.++...+. .++....+.++.||+|||
T Consensus 178 ~~gv~i~~~~~~~~Li--~~~~g~v~Gv~~~~~-------------~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 178 KYDCNFFIEYFALDLI--MDEDGECRGVIAMSM-------------EDGSIHRFRAHYTVIATG 226 (617)
T ss_pred hCCCEEEeceEEEEEE--ECCCCEEEEEEEEEC-------------CCCeEEEEECCcEEEeCC
Confidence 5689999999999977 324678888765331 145556889999999996
No 486
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.65 E-value=0.47 Score=43.19 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||.|-.|..+|..|++.| + +++++|...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G--Vg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG--IDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEECCc
Confidence 3579999999999999999999999 6 699998764
No 487
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.62 E-value=0.46 Score=44.36 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.1
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|||||-.|+-||..|+. ..+..+|.++..++.
T Consensus 2 fivvgggiagvscaeqla~-------------------~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQ-------------------LEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHh-------------------hCCCCcEEEEeccHH
Confidence 6899999999999999986 245567888776653
No 488
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=92.56 E-value=0.14 Score=53.83 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++.+|||||.||...|..|.+. |+.+|.|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 3568999999999999999999987 57999999998664
No 489
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.56 E-value=0.22 Score=50.94 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=31.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|.|||.|..|+..|..|++.| ++|+++|+++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~ 35 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEK 35 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHH
Confidence 37999999999999999999999 999999988653
No 490
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.52 E-value=0.19 Score=40.38 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|||||.+|..-+..|.+ .+ .+|+++....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--------------------~g-A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--------------------AG-AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--------------------CT-BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CC-CEEEEECCch
Confidence 68999999999999999999986 45 5899988763
No 491
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.12 Score=50.05 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+-...|+|+|||||-+|+.||+.|+--- .+|+++|=.+
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAGiv--~hVtllEF~~ 387 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAP 387 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHhhh--heeeeeecch
Confidence 3356899999999999999999999987 7999998543
No 492
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.46 E-value=0.45 Score=47.19 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|-.|-.+|..|++.| + +++|+|+..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG--vg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG--IGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCc
Confidence 4678999999999999999999999 7 899999874
No 493
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.45 E-value=0.22 Score=48.87 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++..++|+|||+|-.|.+.|..|++.+ ++|+++.+++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC
Confidence 345679999999999999999999998 9999998753
No 494
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.40 E-value=0.38 Score=44.88 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||.|-.|-.+|..|++.| + +++|+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G--vg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG--VGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCE
Confidence 4679999999999999999999998 5 899998764
No 495
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=92.38 E-value=2.1 Score=46.52 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=26.0
Q ss_pred CceeeeccCCCC--Cc---chhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKRG--PT---GIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~g--~~---~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+||.+||+++. |. |.- .++++|..++..|+..+.+
T Consensus 340 gRVfLaGDAAH~hsP~~GQGmN-~giqDA~nLawkLa~vl~g 380 (634)
T PRK08294 340 PRVFIAGDACHTHSAKAGQGMN-VSMQDGFNLGWKLAAVLSG 380 (634)
T ss_pred CCEEEEecCccCCCCccccchh-hHHHHHHHHHHHHHHHHcC
Confidence 589999999852 32 333 6788888888888776654
No 496
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=92.34 E-value=0.68 Score=44.58 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=37.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 345 (483)
...+++..+..+++++ . .+|+|.+|++.+. .|+...+..|.||+|+|--
T Consensus 157 pe~~ki~~nskvv~il--~-n~gkVsgVeymd~--------------sgek~~~~~~~VVlatGGf 205 (477)
T KOG2404|consen 157 PELVKILLNSKVVDIL--R-NNGKVSGVEYMDA--------------SGEKSKIIGDAVVLATGGF 205 (477)
T ss_pred hHHHhhhhcceeeeee--c-CCCeEEEEEEEcC--------------CCCccceecCceEEecCCc
Confidence 4567888899999998 4 5899999987652 4555578889999999843
No 497
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.33 E-value=0.18 Score=57.03 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||||.|||+||..+++.| .+|+|+||.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G--~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHG--ANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence 3468999999999999999999998 99999999864
No 498
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.28 E-value=0.51 Score=52.39 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=28.2
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~ 214 (483)
+|+|||+|+.|+-+|..|.+ .+ ..+|+|+.++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~--------------------~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKL--------------------LDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHH--------------------hCCCCeEEEEecCCC
Confidence 69999999999999998875 32 357999998864
No 499
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.04 E-value=0.17 Score=50.89 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~ 53 (483)
....+++|||+||+|+++|+.++.. .+...|.++|..
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 3568999999999999999999864 356899999977
No 500
>PRK08275 putative oxidoreductase; Provisional
Probab=91.79 E-value=0.3 Score=52.08 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||+|.||++||..+++.+++.+|+|+||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4699999999999999999998754599999999875
Done!