Query 011535
Match_columns 483
No_of_seqs 329 out of 2985
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lqt_A FPRA; NADP+ derivative, 100.0 3.3E-66 1.1E-70 532.6 30.9 447 18-483 2-455 (456)
2 1cjc_A Protein (adrenodoxin re 100.0 4.6E-65 1.6E-69 524.7 33.8 447 18-483 5-459 (460)
3 2vdc_G Glutamate synthase [NAD 100.0 8.1E-41 2.8E-45 343.3 22.3 321 17-419 120-447 (456)
4 4gcm_A TRXR, thioredoxin reduc 100.0 2.6E-33 9E-38 274.3 26.9 286 18-417 5-307 (312)
5 4a5l_A Thioredoxin reductase; 100.0 2.6E-33 8.9E-38 274.3 26.2 289 19-417 4-313 (314)
6 3itj_A Thioredoxin reductase 1 100.0 2.7E-33 9.4E-38 276.7 26.5 291 17-418 20-337 (338)
7 3r9u_A Thioredoxin reductase; 100.0 6.9E-33 2.4E-37 271.1 28.3 286 18-418 3-314 (315)
8 1gte_A Dihydropyrimidine dehyd 100.0 3.4E-34 1.2E-38 320.9 20.5 314 18-416 186-508 (1025)
9 2q7v_A Thioredoxin reductase; 100.0 3.2E-32 1.1E-36 268.2 29.8 286 19-419 8-315 (325)
10 3f8d_A Thioredoxin reductase ( 100.0 3.3E-32 1.1E-36 267.1 27.2 286 19-419 15-320 (323)
11 1vdc_A NTR, NADPH dependent th 100.0 3E-32 1E-36 269.1 26.2 296 19-419 8-326 (333)
12 3cty_A Thioredoxin reductase; 100.0 7.2E-32 2.5E-36 264.9 27.8 287 19-418 16-318 (319)
13 1fl2_A Alkyl hydroperoxide red 100.0 1.2E-31 4.2E-36 262.0 29.2 285 20-418 2-307 (310)
14 2q0l_A TRXR, thioredoxin reduc 100.0 9.2E-32 3.1E-36 263.1 27.7 285 20-417 2-310 (311)
15 3lzw_A Ferredoxin--NADP reduct 100.0 8.2E-32 2.8E-36 265.4 27.2 286 19-419 7-318 (332)
16 2a87_A TRXR, TR, thioredoxin r 100.0 3.9E-32 1.3E-36 268.8 24.3 291 17-421 12-321 (335)
17 2zbw_A Thioredoxin reductase; 100.0 1.2E-31 4E-36 265.1 26.8 297 18-421 4-322 (335)
18 1trb_A Thioredoxin reductase; 100.0 6.9E-32 2.4E-36 264.9 23.8 291 19-418 5-316 (320)
19 3ab1_A Ferredoxin--NADP reduct 100.0 5.3E-31 1.8E-35 263.2 27.2 291 18-419 13-331 (360)
20 3oc4_A Oxidoreductase, pyridin 100.0 2.4E-31 8.1E-36 273.9 23.2 288 20-413 3-313 (452)
21 4eqs_A Coenzyme A disulfide re 100.0 2.2E-32 7.4E-37 280.0 15.2 281 20-413 1-310 (437)
22 3lxd_A FAD-dependent pyridine 100.0 5.3E-32 1.8E-36 275.8 16.7 292 18-413 8-320 (415)
23 4g6h_A Rotenone-insensitive NA 100.0 1.9E-33 6.7E-38 292.0 5.8 321 16-414 39-399 (502)
24 4fk1_A Putative thioredoxin re 100.0 2.5E-31 8.6E-36 259.4 20.3 279 17-418 4-302 (304)
25 1mo9_A ORF3; nucleotide bindin 100.0 9.2E-31 3.1E-35 274.1 25.8 291 17-413 41-377 (523)
26 3fbs_A Oxidoreductase; structu 100.0 1.2E-30 4.2E-35 252.9 24.1 275 19-419 2-295 (297)
27 1zmd_A Dihydrolipoyl dehydroge 100.0 3.7E-31 1.3E-35 274.2 21.4 290 19-413 6-344 (474)
28 1hyu_A AHPF, alkyl hydroperoxi 100.0 4.1E-30 1.4E-34 268.9 28.9 288 17-418 210-518 (521)
29 1ebd_A E3BD, dihydrolipoamide 100.0 1.2E-30 4E-35 269.0 24.1 283 19-413 3-332 (455)
30 3ef6_A Toluene 1,2-dioxygenase 100.0 8.7E-32 3E-36 273.7 14.5 288 20-413 3-308 (410)
31 2qae_A Lipoamide, dihydrolipoy 100.0 1.1E-30 3.6E-35 270.3 22.8 288 19-413 2-339 (468)
32 3kd9_A Coenzyme A disulfide re 100.0 4.9E-31 1.7E-35 271.4 20.1 290 19-413 3-314 (449)
33 1dxl_A Dihydrolipoamide dehydr 100.0 1.3E-30 4.3E-35 269.9 23.3 290 18-413 5-341 (470)
34 3urh_A Dihydrolipoyl dehydroge 100.0 2.9E-30 9.8E-35 268.6 24.9 288 18-413 24-362 (491)
35 3lad_A Dihydrolipoamide dehydr 100.0 1.4E-29 4.7E-34 262.5 29.9 288 18-413 2-342 (476)
36 3fg2_P Putative rubredoxin red 100.0 1.4E-31 4.8E-36 271.6 14.3 291 19-413 1-309 (404)
37 4a9w_A Monooxygenase; baeyer-v 100.0 3.8E-30 1.3E-34 255.8 24.1 306 19-417 3-353 (357)
38 2a8x_A Dihydrolipoyl dehydroge 100.0 9.1E-31 3.1E-35 270.5 19.9 285 19-413 3-333 (464)
39 2hqm_A GR, grase, glutathione 100.0 1.2E-30 4.1E-35 270.5 20.6 284 18-413 10-346 (479)
40 3l8k_A Dihydrolipoyl dehydroge 100.0 2.8E-30 9.5E-35 266.9 22.6 286 19-413 4-332 (466)
41 3dk9_A Grase, GR, glutathione 100.0 1.3E-30 4.3E-35 270.4 19.9 290 18-414 19-356 (478)
42 1v59_A Dihydrolipoamide dehydr 100.0 7.5E-30 2.6E-34 264.7 25.2 289 19-413 5-349 (478)
43 2bc0_A NADH oxidase; flavoprot 100.0 2.2E-30 7.4E-35 269.4 20.7 291 19-413 35-360 (490)
44 2wpf_A Trypanothione reductase 100.0 2.7E-30 9.3E-35 268.7 21.2 284 19-413 7-354 (495)
45 3ic9_A Dihydrolipoamide dehydr 100.0 9.8E-31 3.3E-35 271.9 17.8 287 19-414 8-338 (492)
46 1fec_A Trypanothione reductase 100.0 4.7E-30 1.6E-34 266.6 22.8 284 19-413 3-350 (490)
47 1zk7_A HGII, reductase, mercur 100.0 1.9E-29 6.4E-34 260.9 27.1 282 18-413 3-333 (467)
48 3klj_A NAD(FAD)-dependent dehy 100.0 1.4E-31 4.8E-36 269.3 10.8 274 18-413 8-293 (385)
49 1xdi_A RV3303C-LPDA; reductase 100.0 8E-30 2.7E-34 265.7 24.3 283 19-413 2-341 (499)
50 1ges_A Glutathione reductase; 100.0 1.3E-30 4.6E-35 268.0 17.6 282 19-413 4-327 (450)
51 3iwa_A FAD-dependent pyridine 100.0 2.4E-30 8.3E-35 267.9 19.0 294 19-413 3-328 (472)
52 3ntd_A FAD-dependent pyridine 100.0 3.2E-30 1.1E-34 273.1 20.1 310 20-413 2-337 (565)
53 2eq6_A Pyruvate dehydrogenase 100.0 5E-30 1.7E-34 264.8 20.3 287 19-413 6-333 (464)
54 2v3a_A Rubredoxin reductase; a 100.0 4.2E-30 1.4E-34 259.1 18.7 290 19-413 4-305 (384)
55 2cdu_A NADPH oxidase; flavoenz 100.0 5.4E-30 1.9E-34 263.8 19.9 289 20-413 1-316 (452)
56 1onf_A GR, grase, glutathione 100.0 1.3E-29 4.4E-34 264.1 22.5 282 19-413 2-370 (500)
57 2r9z_A Glutathione amide reduc 100.0 8E-30 2.7E-34 263.1 20.5 282 19-413 4-326 (463)
58 3cgb_A Pyridine nucleotide-dis 100.0 1.1E-29 3.7E-34 263.4 20.9 291 19-413 36-352 (480)
59 1ojt_A Surface protein; redox- 100.0 3E-29 1E-33 260.3 24.2 284 19-413 6-348 (482)
60 4dna_A Probable glutathione re 100.0 6.3E-30 2.2E-34 264.1 19.0 282 19-413 5-330 (463)
61 1nhp_A NADH peroxidase; oxidor 100.0 1.5E-29 5.2E-34 260.1 21.3 290 20-413 1-315 (447)
62 2yqu_A 2-oxoglutarate dehydrog 100.0 3.7E-29 1.3E-33 257.8 23.6 283 20-413 2-326 (455)
63 3ics_A Coenzyme A-disulfide re 100.0 9.9E-30 3.4E-34 270.4 19.7 293 16-413 33-352 (588)
64 3o0h_A Glutathione reductase; 100.0 1E-29 3.5E-34 263.9 19.2 282 19-414 26-351 (484)
65 1q1r_A Putidaredoxin reductase 100.0 4.3E-30 1.5E-34 262.7 15.9 292 19-413 4-318 (431)
66 3dgz_A Thioredoxin reductase 2 100.0 6E-29 2.1E-33 258.4 24.2 290 18-413 5-351 (488)
67 3qfa_A Thioredoxin reductase 1 100.0 5.5E-29 1.9E-33 260.3 23.5 291 18-413 31-379 (519)
68 1lvl_A Dihydrolipoamide dehydr 100.0 6.3E-29 2.2E-33 256.1 23.6 280 19-413 5-329 (458)
69 1xhc_A NADH oxidase /nitrite r 100.0 1.1E-29 3.7E-34 254.2 16.6 277 19-413 8-296 (367)
70 3dgh_A TRXR-1, thioredoxin red 100.0 7.1E-29 2.4E-33 257.6 22.8 288 18-413 8-351 (483)
71 2gqw_A Ferredoxin reductase; f 100.0 9.5E-30 3.3E-34 258.4 15.0 278 18-413 6-307 (408)
72 3hyw_A Sulfide-quinone reducta 100.0 1.8E-30 6.1E-35 265.5 7.6 309 19-422 2-339 (430)
73 2xve_A Flavin-containing monoo 100.0 7.5E-28 2.6E-32 248.2 26.6 265 20-413 3-338 (464)
74 3sx6_A Sulfide-quinone reducta 100.0 5.3E-29 1.8E-33 255.2 16.2 312 19-422 4-350 (437)
75 3d1c_A Flavin-containing putat 100.0 1.1E-27 3.6E-32 239.8 25.0 289 19-416 4-339 (369)
76 2x8g_A Thioredoxin glutathione 100.0 3.1E-28 1.1E-32 259.3 22.0 290 17-413 105-458 (598)
77 2gag_A Heterotetrameric sarcos 100.0 9.5E-28 3.2E-32 267.1 20.2 286 19-417 128-445 (965)
78 4b1b_A TRXR, thioredoxin reduc 99.9 1E-27 3.5E-32 249.9 16.5 285 19-414 42-384 (542)
79 3vrd_B FCCB subunit, flavocyto 99.9 4.7E-28 1.6E-32 245.5 13.3 307 19-422 2-330 (401)
80 3k30_A Histamine dehydrogenase 99.9 1.1E-27 3.7E-32 258.8 16.8 283 17-424 389-683 (690)
81 1o94_A Tmadh, trimethylamine d 99.9 6E-28 2.1E-32 261.8 13.2 293 17-420 387-704 (729)
82 3h8l_A NADH oxidase; membrane 99.9 2.2E-27 7.6E-32 241.2 14.9 290 20-418 2-338 (409)
83 3h28_A Sulfide-quinone reducta 99.9 3.7E-27 1.3E-31 241.1 13.1 303 19-421 2-338 (430)
84 2gv8_A Monooxygenase; FMO, FAD 99.9 1.9E-25 6.4E-30 229.6 25.2 267 18-413 5-359 (447)
85 3s5w_A L-ornithine 5-monooxyge 99.9 6.8E-26 2.3E-30 234.0 21.3 336 19-418 30-451 (463)
86 1m6i_A Programmed cell death p 99.9 6.2E-27 2.1E-31 243.2 11.5 296 18-413 10-351 (493)
87 1ps9_A 2,4-dienoyl-COA reducta 99.9 8.4E-26 2.9E-30 243.3 20.3 282 17-411 371-671 (671)
88 1y56_A Hypothetical protein PH 99.9 5.1E-25 1.8E-29 228.8 16.1 251 19-415 108-376 (493)
89 3gwf_A Cyclohexanone monooxyge 99.9 9.5E-24 3.2E-28 221.0 21.1 162 19-215 8-213 (540)
90 3uox_A Otemo; baeyer-villiger 99.9 1E-21 3.5E-26 205.8 26.0 170 18-215 8-220 (545)
91 4ap3_A Steroid monooxygenase; 99.9 1.7E-21 5.9E-26 204.3 22.9 164 18-215 20-226 (549)
92 1w4x_A Phenylacetone monooxyge 99.9 9.5E-21 3.3E-25 199.0 24.8 164 18-215 15-221 (542)
93 4b63_A L-ornithine N5 monooxyg 99.8 8.2E-19 2.8E-23 182.3 24.1 170 19-215 39-283 (501)
94 2ywl_A Thioredoxin reductase r 99.7 1.2E-16 4.1E-21 142.8 12.8 175 161-422 3-177 (180)
95 3fpz_A Thiazole biosynthetic e 99.7 2.7E-20 9.3E-25 183.0 -12.6 140 18-180 64-204 (326)
96 2e5v_A L-aspartate oxidase; ar 99.3 2E-12 7E-17 133.1 6.4 31 21-53 1-31 (472)
97 2cul_A Glucose-inhibited divis 99.2 3.2E-11 1.1E-15 112.1 9.5 36 378-415 196-231 (232)
98 2ywl_A Thioredoxin reductase r 98.9 1E-08 3.6E-13 90.8 10.8 95 20-118 2-109 (180)
99 3v76_A Flavoprotein; structura 98.8 8.8E-09 3E-13 104.0 10.0 103 15-119 23-187 (417)
100 1rp0_A ARA6, thiazole biosynth 98.7 9.9E-08 3.4E-12 91.2 11.2 39 18-58 38-77 (284)
101 1rp0_A ARA6, thiazole biosynth 98.6 7.3E-08 2.5E-12 92.1 9.6 125 280-418 132-277 (284)
102 2cul_A Glucose-inhibited divis 98.6 3.1E-07 1.1E-11 85.0 12.9 95 19-118 3-124 (232)
103 2bry_A NEDD9 interacting prote 98.6 1.5E-07 5E-12 97.3 11.8 101 16-118 89-229 (497)
104 2gqf_A Hypothetical protein HI 98.6 1.5E-07 5.2E-12 94.5 10.8 99 19-119 4-168 (401)
105 3alj_A 2-methyl-3-hydroxypyrid 98.6 2.8E-07 9.6E-12 91.8 11.6 99 18-118 10-159 (379)
106 3kkj_A Amine oxidase, flavin-c 98.5 6.9E-08 2.4E-12 90.4 5.5 41 19-61 2-42 (336)
107 2i0z_A NAD(FAD)-utilizing dehy 98.5 3.9E-07 1.3E-11 92.9 10.1 100 18-119 25-191 (447)
108 1y0p_A Fumarate reductase flav 98.4 1.2E-06 4E-11 92.3 11.9 40 17-58 124-163 (571)
109 3nix_A Flavoprotein/dehydrogen 98.4 8.6E-07 2.9E-11 89.4 9.7 98 19-118 5-165 (421)
110 3ces_A MNMG, tRNA uridine 5-ca 98.4 1E-06 3.5E-11 92.6 10.3 40 378-419 382-421 (651)
111 3jsk_A Cypbp37 protein; octame 98.4 3.6E-06 1.2E-10 81.8 13.2 40 19-58 79-118 (344)
112 3nlc_A Uncharacterized protein 98.4 1E-06 3.4E-11 91.6 9.7 48 368-418 497-545 (549)
113 3ihg_A RDME; flavoenzyme, anth 98.3 3.1E-06 1.1E-10 88.3 13.0 37 18-56 4-40 (535)
114 2x3n_A Probable FAD-dependent 98.3 2.4E-06 8.1E-11 85.6 11.7 99 19-119 6-166 (399)
115 1ryi_A Glycine oxidase; flavop 98.3 1.4E-06 4.9E-11 86.5 10.0 37 18-56 16-52 (382)
116 1yvv_A Amine oxidase, flavin-c 98.3 2.2E-06 7.7E-11 83.4 11.0 39 19-59 2-40 (336)
117 3fmw_A Oxygenase; mithramycin, 98.3 2.9E-06 1E-10 89.0 11.7 100 18-119 48-207 (570)
118 3qj4_A Renalase; FAD/NAD(P)-bi 98.3 2.2E-06 7.5E-11 83.9 9.6 38 20-59 2-42 (342)
119 3rp8_A Flavoprotein monooxygen 98.2 3.5E-06 1.2E-10 84.6 10.5 38 17-56 21-58 (407)
120 3i3l_A Alkylhalidase CMLS; fla 98.2 3.1E-06 1.1E-10 89.1 10.2 36 18-55 22-57 (591)
121 3cgv_A Geranylgeranyl reductas 98.2 3.2E-06 1.1E-10 84.3 9.3 37 19-57 4-40 (397)
122 1y56_B Sarcosine oxidase; dehy 98.2 6.9E-06 2.3E-10 81.5 11.6 36 18-55 4-39 (382)
123 3e1t_A Halogenase; flavoprotei 98.2 3.7E-06 1.3E-10 87.2 10.0 34 19-54 7-40 (512)
124 2vou_A 2,6-dihydroxypyridine h 98.2 3.6E-06 1.2E-10 84.3 9.4 37 18-56 4-40 (397)
125 1qo8_A Flavocytochrome C3 fuma 98.2 3.9E-06 1.3E-10 88.1 9.9 40 17-58 119-158 (566)
126 3dme_A Conserved exported prot 98.2 3.9E-06 1.3E-10 82.6 9.3 35 19-55 4-38 (369)
127 2uzz_A N-methyl-L-tryptophan o 98.2 4.7E-06 1.6E-10 82.4 9.8 36 19-56 2-37 (372)
128 2gjc_A Thiazole biosynthetic e 98.2 1.1E-05 3.7E-10 77.9 11.9 39 20-58 66-104 (326)
129 2qa2_A CABE, polyketide oxygen 98.2 1.2E-05 4.1E-10 83.0 12.9 103 15-119 8-166 (499)
130 1k0i_A P-hydroxybenzoate hydro 98.2 8.6E-06 3E-10 81.3 11.5 34 20-55 3-36 (394)
131 2qa1_A PGAE, polyketide oxygen 98.2 9.7E-06 3.3E-10 83.7 12.2 101 17-119 9-165 (500)
132 3nyc_A D-arginine dehydrogenas 98.2 2.8E-06 9.7E-11 84.1 7.9 37 18-57 8-44 (381)
133 3ps9_A TRNA 5-methylaminomethy 98.2 9.8E-06 3.3E-10 87.0 12.3 37 18-56 271-307 (676)
134 3c4a_A Probable tryptophan hyd 98.1 2.7E-06 9.3E-11 84.7 7.2 98 20-120 1-144 (381)
135 1nhp_A NADH peroxidase; oxidor 98.1 1.3E-05 4.5E-10 81.5 12.0 92 18-121 148-247 (447)
136 4dgk_A Phytoene dehydrogenase; 98.1 1.4E-06 4.9E-11 89.9 4.9 41 19-61 1-41 (501)
137 2zxi_A TRNA uridine 5-carboxym 98.1 9.5E-06 3.2E-10 85.0 10.5 40 378-419 387-426 (637)
138 3oz2_A Digeranylgeranylglycero 98.1 1.4E-06 4.7E-11 86.7 4.1 37 19-57 4-40 (397)
139 2gmh_A Electron transfer flavo 98.1 1.6E-05 5.5E-10 83.7 12.3 37 19-57 35-77 (584)
140 3c4n_A Uncharacterized protein 98.1 6.7E-06 2.3E-10 82.6 8.7 37 19-55 36-72 (405)
141 3pvc_A TRNA 5-methylaminomethy 98.1 1.5E-05 5.3E-10 85.6 12.0 37 18-56 263-299 (689)
142 1xhc_A NADH oxidase /nitrite r 98.1 1.5E-05 5E-10 79.0 10.6 86 19-117 143-232 (367)
143 3atr_A Conserved archaeal prot 98.1 8.2E-06 2.8E-10 83.2 8.9 98 19-118 6-161 (453)
144 4gde_A UDP-galactopyranose mut 98.0 2.5E-06 8.4E-11 88.3 4.7 42 18-61 9-51 (513)
145 1d4d_A Flavocytochrome C fumar 98.0 1.9E-05 6.4E-10 83.0 11.4 39 18-58 125-163 (572)
146 3cp8_A TRNA uridine 5-carboxym 98.0 1.9E-05 6.5E-10 82.9 11.1 35 18-54 20-54 (641)
147 4b1b_A TRXR, thioredoxin reduc 98.0 2E-05 6.9E-10 81.9 10.9 100 9-122 213-321 (542)
148 1lvl_A Dihydrolipoamide dehydr 98.0 2.2E-05 7.5E-10 80.1 10.6 92 18-122 170-270 (458)
149 2yqu_A 2-oxoglutarate dehydrog 98.0 3E-05 1E-09 79.1 11.2 89 18-118 166-263 (455)
150 2eq6_A Pyruvate dehydrogenase 98.0 4E-05 1.4E-09 78.4 12.1 88 18-117 168-269 (464)
151 2v3a_A Rubredoxin reductase; a 98.0 4.6E-05 1.6E-09 75.8 12.2 88 19-117 145-241 (384)
152 2gqw_A Ferredoxin reductase; f 98.0 4.6E-05 1.6E-09 76.5 12.3 89 18-117 144-237 (408)
153 2gag_B Heterotetrameric sarcos 97.9 2.3E-05 7.8E-10 78.3 9.6 39 17-56 19-58 (405)
154 2bc0_A NADH oxidase; flavoprot 97.9 5.9E-05 2E-09 77.6 12.6 90 17-117 192-289 (490)
155 2r9z_A Glutathione amide reduc 97.9 4.8E-05 1.7E-09 77.7 11.5 93 17-122 164-266 (463)
156 1zk7_A HGII, reductase, mercur 97.9 5.2E-05 1.8E-09 77.5 11.7 88 18-118 175-270 (467)
157 3oc4_A Oxidoreductase, pyridin 97.9 0.00011 3.6E-09 74.9 13.6 93 18-122 146-246 (452)
158 2e1m_A L-glutamate oxidase; L- 97.9 1.3E-05 4.4E-10 79.3 6.3 44 16-61 41-85 (376)
159 1ebd_A E3BD, dihydrolipoamide 97.9 8.5E-05 2.9E-09 75.7 12.7 88 18-117 169-268 (455)
160 3i6d_A Protoporphyrinogen oxid 97.9 6.5E-06 2.2E-10 84.0 4.3 43 19-61 5-51 (470)
161 4hb9_A Similarities with proba 97.9 1E-05 3.5E-10 80.8 5.6 36 19-56 1-36 (412)
162 3nrn_A Uncharacterized protein 97.9 1E-05 3.5E-10 81.5 5.6 40 20-61 1-40 (421)
163 3cgb_A Pyridine nucleotide-dis 97.9 5.1E-05 1.8E-09 77.9 10.9 88 18-117 185-280 (480)
164 3klj_A NAD(FAD)-dependent dehy 97.9 1.7E-05 5.9E-10 79.0 7.1 84 19-117 146-229 (385)
165 3lxd_A FAD-dependent pyridine 97.9 8E-05 2.8E-09 74.8 11.9 89 19-118 152-250 (415)
166 4eqs_A Coenzyme A disulfide re 97.9 3.6E-05 1.2E-09 78.0 9.3 90 19-121 147-241 (437)
167 1ojt_A Surface protein; redox- 97.8 7.1E-05 2.4E-09 76.8 11.5 88 18-117 184-284 (482)
168 3ka7_A Oxidoreductase; structu 97.8 1.3E-05 4.5E-10 80.7 5.5 39 20-60 1-39 (425)
169 3nks_A Protoporphyrinogen oxid 97.8 1.3E-05 4.6E-10 82.0 5.5 41 19-61 2-44 (477)
170 1v59_A Dihydrolipoamide dehydr 97.8 0.00012 4E-09 75.1 12.6 88 18-117 182-285 (478)
171 3urh_A Dihydrolipoyl dehydroge 97.8 0.00012 4E-09 75.4 12.2 89 17-117 196-298 (491)
172 2jae_A L-amino acid oxidase; o 97.8 2E-05 6.9E-10 81.0 6.4 42 17-60 9-50 (489)
173 1ges_A Glutathione reductase; 97.8 8.5E-05 2.9E-09 75.6 10.9 89 17-117 165-263 (450)
174 2hqm_A GR, grase, glutathione 97.8 9.2E-05 3.1E-09 76.0 11.2 93 17-122 183-287 (479)
175 1onf_A GR, grase, glutathione 97.8 0.0001 3.6E-09 76.0 11.5 88 19-118 176-274 (500)
176 3ic9_A Dihydrolipoamide dehydr 97.8 0.00015 5.2E-09 74.6 12.7 92 16-121 171-275 (492)
177 3fg2_P Putative rubredoxin red 97.8 0.00012 4.1E-09 73.3 11.6 89 18-117 141-239 (404)
178 3k7m_X 6-hydroxy-L-nicotine ox 97.8 1.6E-05 5.3E-10 80.3 5.0 39 20-60 2-40 (431)
179 2bcg_G Secretory pathway GDP d 97.8 1.9E-05 6.5E-10 80.5 5.5 42 18-61 10-51 (453)
180 1mo9_A ORF3; nucleotide bindin 97.8 0.00013 4.3E-09 75.8 11.7 87 20-118 215-315 (523)
181 1fec_A Trypanothione reductase 97.8 0.00015 5E-09 74.7 12.1 89 17-117 185-286 (490)
182 1zmd_A Dihydrolipoyl dehydroge 97.8 0.00017 5.7E-09 73.9 12.5 88 18-117 177-280 (474)
183 3dk9_A Grase, GR, glutathione 97.8 0.00018 6.3E-09 73.7 12.8 89 17-117 185-291 (478)
184 1s3e_A Amine oxidase [flavin-c 97.8 1.9E-05 6.3E-10 82.0 5.2 41 19-61 4-44 (520)
185 3hdq_A UDP-galactopyranose mut 97.7 2.3E-05 7.9E-10 78.1 5.6 43 17-61 27-69 (397)
186 1pj5_A N,N-dimethylglycine oxi 97.7 0.0001 3.5E-09 81.0 11.3 35 19-55 4-39 (830)
187 3lov_A Protoporphyrinogen oxid 97.7 2.4E-05 8.3E-10 80.1 6.0 42 19-60 4-45 (475)
188 3lad_A Dihydrolipoamide dehydr 97.7 0.00019 6.5E-09 73.5 12.7 89 17-117 178-278 (476)
189 3ef6_A Toluene 1,2-dioxygenase 97.7 6E-05 2.1E-09 75.7 8.8 89 18-117 142-239 (410)
190 2yg5_A Putrescine oxidase; oxi 97.7 1.4E-05 4.9E-10 81.2 4.2 40 19-60 5-44 (453)
191 2a8x_A Dihydrolipoyl dehydroge 97.7 0.00015 5E-09 74.1 11.7 88 18-117 170-269 (464)
192 2wpf_A Trypanothione reductase 97.7 0.00016 5.3E-09 74.6 11.9 89 17-117 189-290 (495)
193 2b9w_A Putative aminooxidase; 97.7 2.9E-05 9.9E-10 78.2 6.3 43 18-61 5-47 (424)
194 2qae_A Lipoamide, dihydrolipoy 97.7 0.00019 6.6E-09 73.3 12.2 88 18-117 173-274 (468)
195 1v0j_A UDP-galactopyranose mut 97.7 2.5E-05 8.7E-10 78.2 5.5 41 19-61 7-48 (399)
196 2cdu_A NADPH oxidase; flavoenz 97.7 0.00017 5.7E-09 73.4 11.4 89 18-117 148-245 (452)
197 2ivd_A PPO, PPOX, protoporphyr 97.7 2.4E-05 8.3E-10 80.1 5.1 43 17-61 14-56 (478)
198 4dna_A Probable glutathione re 97.7 0.0002 7E-09 73.0 11.9 90 16-117 167-266 (463)
199 3ihm_A Styrene monooxygenase A 97.7 3E-05 1E-09 78.5 5.3 35 18-54 21-55 (430)
200 1dxl_A Dihydrolipoamide dehydr 97.7 0.00014 4.8E-09 74.3 10.4 88 18-117 176-277 (470)
201 1trb_A Thioredoxin reductase; 97.7 0.00029 9.9E-09 67.7 12.0 86 18-117 144-245 (320)
202 1q1r_A Putidaredoxin reductase 97.7 0.00021 7.1E-09 72.2 11.3 89 18-117 148-248 (431)
203 2xdo_A TETX2 protein; tetracyc 97.6 4.9E-05 1.7E-09 76.0 6.2 37 18-56 25-61 (398)
204 2vvm_A Monoamine oxidase N; FA 97.6 3.2E-05 1.1E-09 79.6 5.0 40 20-61 40-79 (495)
205 1rsg_A FMS1 protein; FAD bindi 97.6 2.7E-05 9.2E-10 80.7 4.4 42 18-60 7-48 (516)
206 3ics_A Coenzyme A-disulfide re 97.6 0.00021 7E-09 75.3 11.2 88 18-117 186-280 (588)
207 1sez_A Protoporphyrinogen oxid 97.6 4.1E-05 1.4E-09 79.0 5.7 41 18-60 12-52 (504)
208 1xdi_A RV3303C-LPDA; reductase 97.6 0.00028 9.7E-09 72.7 12.0 89 18-118 181-278 (499)
209 3o0h_A Glutathione reductase; 97.6 0.00027 9.2E-09 72.6 11.6 89 17-117 189-286 (484)
210 2bi7_A UDP-galactopyranose mut 97.6 5.1E-05 1.7E-09 75.5 5.8 41 19-61 3-43 (384)
211 3dje_A Fructosyl amine: oxygen 97.6 5.8E-05 2E-09 76.4 6.3 39 18-58 5-44 (438)
212 3kd9_A Coenzyme A disulfide re 97.6 0.0004 1.4E-08 70.5 12.5 88 18-117 147-242 (449)
213 2iid_A L-amino-acid oxidase; f 97.6 5.3E-05 1.8E-09 78.1 5.9 42 17-60 31-72 (498)
214 1i8t_A UDP-galactopyranose mut 97.6 4.2E-05 1.5E-09 75.6 4.9 39 20-60 2-40 (367)
215 3c96_A Flavin-containing monoo 97.6 6.2E-05 2.1E-09 75.5 5.9 36 19-56 4-40 (410)
216 3qfa_A Thioredoxin reductase 1 97.6 0.00048 1.6E-08 71.3 12.7 89 16-117 207-313 (519)
217 3dgh_A TRXR-1, thioredoxin red 97.6 0.00043 1.5E-08 71.0 12.2 89 16-117 184-287 (483)
218 2zbw_A Thioredoxin reductase; 97.6 0.00043 1.5E-08 67.0 11.5 87 18-118 151-251 (335)
219 3iwa_A FAD-dependent pyridine 97.6 0.00035 1.2E-08 71.4 11.3 89 18-117 158-256 (472)
220 3ntd_A FAD-dependent pyridine 97.5 0.00036 1.2E-08 73.0 11.5 88 18-117 150-265 (565)
221 3d1c_A Flavin-containing putat 97.5 0.00032 1.1E-08 68.9 10.5 96 18-118 165-271 (369)
222 3dgz_A Thioredoxin reductase 2 97.5 0.00052 1.8E-08 70.5 12.4 89 16-117 182-285 (488)
223 4dsg_A UDP-galactopyranose mut 97.5 8.5E-05 2.9E-09 76.3 5.8 44 18-62 8-51 (484)
224 1m6i_A Programmed cell death p 97.5 0.00052 1.8E-08 70.6 11.7 91 19-118 180-281 (493)
225 3itj_A Thioredoxin reductase 1 97.5 0.00051 1.7E-08 66.4 10.8 83 18-117 172-269 (338)
226 2gf3_A MSOX, monomeric sarcosi 97.5 9.5E-05 3.2E-09 73.3 5.6 37 19-57 3-39 (389)
227 1c0p_A D-amino acid oxidase; a 97.5 0.00014 4.7E-09 71.6 6.6 37 18-56 5-41 (363)
228 3g3e_A D-amino-acid oxidase; F 97.5 6.7E-05 2.3E-09 73.5 4.3 36 20-55 1-40 (351)
229 2oln_A NIKD protein; flavoprot 97.5 0.00011 3.6E-09 73.3 5.7 36 20-57 5-40 (397)
230 2z3y_A Lysine-specific histone 97.4 0.00012 4.3E-09 78.1 6.2 42 17-60 105-146 (662)
231 2xag_A Lysine-specific histone 97.4 0.00014 4.8E-09 79.4 6.3 42 17-60 276-317 (852)
232 4at0_A 3-ketosteroid-delta4-5a 97.4 0.00011 3.9E-09 75.9 5.4 38 19-58 41-78 (510)
233 2aqj_A Tryptophan halogenase, 97.4 0.00016 5.4E-09 75.4 6.5 37 18-56 4-43 (538)
234 2e4g_A Tryptophan halogenase; 97.4 0.00018 6E-09 75.2 6.4 36 18-55 24-62 (550)
235 1d5t_A Guanine nucleotide diss 97.4 0.00016 5.4E-09 73.2 5.8 42 18-61 5-46 (433)
236 2r0c_A REBC; flavin adenine di 97.4 0.00011 3.9E-09 76.6 4.9 37 19-57 26-62 (549)
237 3cgv_A Geranylgeranyl reductas 97.4 0.0005 1.7E-08 68.2 9.4 138 161-346 6-162 (397)
238 2pyx_A Tryptophan halogenase; 97.4 0.00015 5.1E-09 75.3 5.6 37 18-56 6-54 (526)
239 3e1t_A Halogenase; flavoprotei 97.4 0.00026 8.8E-09 73.2 7.3 61 260-346 112-172 (512)
240 3g5s_A Methylenetetrahydrofola 97.4 0.00018 6.3E-09 70.5 5.7 41 378-420 326-366 (443)
241 2bry_A NEDD9 interacting prote 97.3 0.00079 2.7E-08 69.3 10.8 138 158-348 91-232 (497)
242 3nlc_A Uncharacterized protein 97.3 0.0004 1.4E-08 72.1 8.2 47 280-347 232-278 (549)
243 3da1_A Glycerol-3-phosphate de 97.3 0.00017 5.7E-09 75.5 5.2 42 16-59 15-56 (561)
244 2q7v_A Thioredoxin reductase; 97.3 0.0016 5.6E-08 62.6 11.9 83 18-117 151-247 (325)
245 3v76_A Flavoprotein; structura 97.3 0.001 3.5E-08 66.7 10.7 35 159-214 27-61 (417)
246 3ab1_A Ferredoxin--NADP reduct 97.3 0.00084 2.9E-08 65.8 9.9 87 18-118 162-262 (360)
247 1fl2_A Alkyl hydroperoxide red 97.3 0.0017 6E-08 61.9 11.6 82 18-117 143-240 (310)
248 1b37_A Protein (polyamine oxid 97.3 0.0002 6.8E-09 73.2 5.2 42 18-61 3-45 (472)
249 1vdc_A NTR, NADPH dependent th 97.3 0.0018 6.3E-08 62.4 11.8 83 18-117 158-257 (333)
250 2q0l_A TRXR, thioredoxin reduc 97.3 0.002 6.8E-08 61.5 12.0 83 18-117 142-239 (311)
251 3s5w_A L-ornithine 5-monooxyge 97.3 0.00072 2.5E-08 68.8 9.3 39 18-56 226-264 (463)
252 4g6h_A Rotenone-insensitive NA 97.3 0.0011 3.9E-08 68.1 10.8 88 20-117 218-330 (502)
253 1chu_A Protein (L-aspartate ox 97.2 0.00018 6.1E-09 74.9 4.7 37 18-57 7-43 (540)
254 3r9u_A Thioredoxin reductase; 97.2 0.0021 7.2E-08 61.2 11.4 83 18-117 146-242 (315)
255 2weu_A Tryptophan 5-halogenase 97.2 0.00025 8.5E-09 73.3 5.0 35 19-55 2-39 (511)
256 1pn0_A Phenol 2-monooxygenase; 97.2 0.00015 5E-09 77.5 3.3 35 19-55 8-47 (665)
257 4gut_A Lysine-specific histone 97.2 0.00029 1E-08 76.2 5.6 40 18-59 335-374 (776)
258 2qcu_A Aerobic glycerol-3-phos 97.2 0.0003 1E-08 72.6 5.4 37 19-57 3-39 (501)
259 3hyw_A Sulfide-quinone reducta 97.2 0.0011 3.6E-08 67.0 9.3 37 160-215 3-39 (430)
260 3vrd_B FCCB subunit, flavocyto 97.2 0.00021 7.1E-09 71.4 4.0 38 159-215 2-39 (401)
261 2dkh_A 3-hydroxybenzoate hydro 97.2 0.00025 8.7E-09 75.4 4.8 36 19-56 32-68 (639)
262 3f8d_A Thioredoxin reductase ( 97.2 0.0025 8.4E-08 61.0 11.4 83 18-117 153-249 (323)
263 2gjc_A Thiazole biosynthetic e 97.2 0.00094 3.2E-08 64.3 8.3 124 281-416 160-325 (326)
264 2x8g_A Thioredoxin glutathione 97.1 0.0024 8.2E-08 67.3 12.2 87 18-117 285-393 (598)
265 2a87_A TRXR, TR, thioredoxin r 97.1 0.0019 6.7E-08 62.5 10.4 83 18-117 154-250 (335)
266 3pl8_A Pyranose 2-oxidase; sub 97.1 0.00037 1.3E-08 73.7 5.5 39 19-59 46-84 (623)
267 3l8k_A Dihydrolipoyl dehydroge 97.1 0.0019 6.4E-08 65.8 10.5 87 17-117 170-270 (466)
268 3gwf_A Cyclohexanone monooxyge 97.1 0.0026 9E-08 66.0 11.7 37 17-55 176-212 (540)
269 3cty_A Thioredoxin reductase; 97.1 0.0021 7.1E-08 61.7 10.3 82 18-117 154-250 (319)
270 2rgh_A Alpha-glycerophosphate 97.1 0.00027 9.2E-09 74.1 4.2 39 18-58 31-69 (571)
271 3p1w_A Rabgdi protein; GDI RAB 97.1 0.00035 1.2E-08 71.0 4.9 41 18-60 19-59 (475)
272 3jsk_A Cypbp37 protein; octame 97.1 0.0014 4.8E-08 63.6 8.9 127 281-417 174-336 (344)
273 2wdq_A Succinate dehydrogenase 97.1 0.00036 1.2E-08 73.4 4.8 36 19-56 7-42 (588)
274 3oz2_A Digeranylgeranylglycero 97.1 0.0014 4.8E-08 64.6 8.9 138 161-346 6-162 (397)
275 1kf6_A Fumarate reductase flav 97.0 0.00039 1.3E-08 73.3 4.8 37 19-55 5-41 (602)
276 2i0z_A NAD(FAD)-utilizing dehy 97.0 0.002 6.9E-08 65.2 9.7 46 280-346 146-191 (447)
277 2h88_A Succinate dehydrogenase 97.0 0.00045 1.5E-08 72.9 4.8 35 19-55 18-52 (621)
278 3atr_A Conserved archaeal prot 97.0 0.0019 6.5E-08 65.5 9.2 140 160-346 7-162 (453)
279 2gv8_A Monooxygenase; FMO, FAD 97.0 0.0024 8.2E-08 64.7 9.9 74 18-118 211-291 (447)
280 3nix_A Flavoprotein/dehydrogen 97.0 0.0018 6.1E-08 64.8 8.8 37 381-418 288-329 (421)
281 4a9w_A Monooxygenase; baeyer-v 97.0 0.0017 5.8E-08 63.0 8.2 34 160-214 4-37 (357)
282 3k30_A Histamine dehydrogenase 97.0 0.0028 9.6E-08 68.0 10.6 89 18-117 522-622 (690)
283 2xve_A Flavin-containing monoo 96.9 0.0027 9.1E-08 64.7 9.7 77 18-118 196-275 (464)
284 3sx6_A Sulfide-quinone reducta 96.9 0.0006 2.1E-08 68.9 4.8 38 159-214 4-41 (437)
285 3i3l_A Alkylhalidase CMLS; fla 96.9 0.0067 2.3E-07 63.6 12.7 60 260-346 129-188 (591)
286 3axb_A Putative oxidoreductase 96.9 0.00059 2E-08 69.1 4.5 35 18-53 22-56 (448)
287 2bs2_A Quinol-fumarate reducta 96.9 0.00055 1.9E-08 72.8 4.4 36 19-56 5-40 (660)
288 3uox_A Otemo; baeyer-villiger 96.9 0.0069 2.3E-07 62.9 12.6 37 17-55 183-219 (545)
289 2gqf_A Hypothetical protein HI 96.9 0.0033 1.1E-07 62.7 9.6 33 161-214 6-38 (401)
290 3lzw_A Ferredoxin--NADP reduct 96.9 0.0036 1.2E-07 60.1 9.6 82 18-117 153-248 (332)
291 4ap3_A Steroid monooxygenase; 96.9 0.006 2E-07 63.5 11.8 37 17-55 189-225 (549)
292 3h8l_A NADH oxidase; membrane 96.8 0.0021 7.3E-08 64.2 7.7 37 160-214 2-38 (409)
293 3gyx_A Adenylylsulfate reducta 96.8 0.00097 3.3E-08 70.9 5.3 43 376-418 448-491 (662)
294 1hyu_A AHPF, alkyl hydroperoxi 96.8 0.0069 2.3E-07 62.6 11.6 82 18-117 354-451 (521)
295 3ayj_A Pro-enzyme of L-phenyla 96.7 0.00067 2.3E-08 72.2 3.6 39 18-56 55-100 (721)
296 2x3n_A Probable FAD-dependent 96.7 0.0051 1.7E-07 61.1 9.9 34 160-214 7-40 (399)
297 1jnr_A Adenylylsulfate reducta 96.7 0.0012 4E-08 70.2 5.3 35 19-55 22-60 (643)
298 4a5l_A Thioredoxin reductase; 96.7 0.0088 3E-07 56.9 10.9 36 18-55 151-186 (314)
299 4gcm_A TRXR, thioredoxin reduc 96.7 0.014 4.6E-07 55.7 12.1 37 18-56 144-180 (312)
300 3h28_A Sulfide-quinone reducta 96.7 0.0047 1.6E-07 62.2 9.2 37 160-215 3-39 (430)
301 1y0p_A Fumarate reductase flav 96.6 0.01 3.6E-07 62.0 11.7 51 280-346 267-317 (571)
302 3fbs_A Oxidoreductase; structu 96.6 0.0033 1.1E-07 59.3 7.1 79 18-117 140-224 (297)
303 1k0i_A P-hydroxybenzoate hydro 96.6 0.0044 1.5E-07 61.4 7.8 33 161-214 4-36 (394)
304 2gmh_A Electron transfer flavo 96.5 0.011 3.7E-07 62.0 10.7 156 160-346 36-217 (584)
305 2vdc_G Glutamate synthase [NAD 96.5 0.0066 2.3E-07 61.6 8.7 38 17-56 262-300 (456)
306 3dme_A Conserved exported prot 96.4 0.012 4.3E-07 57.1 10.2 48 280-346 162-209 (369)
307 3alj_A 2-methyl-3-hydroxypyrid 96.4 0.0091 3.1E-07 58.8 9.2 36 159-215 11-46 (379)
308 3k7m_X 6-hydroxy-L-nicotine ox 96.4 0.0069 2.4E-07 60.7 8.4 20 161-180 3-22 (431)
309 1ps9_A 2,4-dienoyl-COA reducta 96.4 0.012 4.2E-07 62.7 10.6 92 17-117 492-626 (671)
310 1kdg_A CDH, cellobiose dehydro 96.3 0.0028 9.5E-08 66.0 5.0 37 18-56 6-42 (546)
311 1ryi_A Glycine oxidase; flavop 96.3 0.019 6.5E-07 56.3 10.8 21 160-180 18-38 (382)
312 1d4d_A Flavocytochrome C fumar 96.3 0.027 9.3E-07 58.8 12.4 50 280-346 267-317 (572)
313 1qo8_A Flavocytochrome C3 fuma 96.3 0.015 5E-07 60.8 10.2 50 280-346 262-312 (566)
314 2vou_A 2,6-dihydroxypyridine h 96.3 0.023 8E-07 56.2 11.3 35 159-214 5-39 (397)
315 4at0_A 3-ketosteroid-delta4-5a 96.3 0.023 7.9E-07 58.4 11.5 50 280-346 214-264 (510)
316 3dje_A Fructosyl amine: oxygen 96.2 0.017 5.9E-07 57.9 10.2 48 280-348 173-223 (438)
317 1y56_B Sarcosine oxidase; dehy 96.2 0.013 4.5E-07 57.5 9.0 33 160-213 6-38 (382)
318 1o94_A Tmadh, trimethylamine d 96.2 0.0068 2.3E-07 65.3 7.2 66 18-95 527-594 (729)
319 3dfz_A SIRC, precorrin-2 dehyd 96.2 0.019 6.4E-07 52.0 9.0 73 17-117 29-101 (223)
320 1yvv_A Amine oxidase, flavin-c 96.2 0.012 4.2E-07 56.5 8.4 34 160-214 3-36 (336)
321 2zxi_A TRNA uridine 5-carboxym 96.1 0.025 8.5E-07 59.2 10.9 32 160-212 28-59 (637)
322 3ces_A MNMG, tRNA uridine 5-ca 96.1 0.029 9.9E-07 58.9 11.4 32 160-212 29-60 (651)
323 3lk7_A UDP-N-acetylmuramoylala 96.1 0.0068 2.3E-07 61.4 6.5 75 18-118 8-83 (451)
324 2gag_A Heterotetrameric sarcos 96.1 0.0089 3E-07 66.5 7.8 78 19-117 284-381 (965)
325 1cjc_A Protein (adrenodoxin re 96.1 0.029 1E-06 56.8 11.0 36 18-55 144-200 (460)
326 2gag_B Heterotetrameric sarcos 96.0 0.029 9.8E-07 55.4 10.2 45 280-346 186-230 (405)
327 2qa2_A CABE, polyketide oxygen 95.9 0.028 9.7E-07 57.6 10.3 35 159-214 12-46 (499)
328 1lqt_A FPRA; NADP+ derivative, 95.9 0.047 1.6E-06 55.3 11.5 37 18-55 146-202 (456)
329 3t37_A Probable dehydrogenase; 95.9 0.0051 1.7E-07 63.6 4.4 37 18-55 16-52 (526)
330 1ju2_A HydroxynitrIle lyase; f 95.8 0.0032 1.1E-07 65.3 2.6 36 18-56 25-60 (536)
331 1gte_A Dihydropyrimidine dehyd 95.8 0.04 1.4E-06 61.7 11.4 85 18-118 331-441 (1025)
332 4fk1_A Putative thioredoxin re 95.8 0.024 8.1E-07 53.9 8.4 32 161-213 8-39 (304)
333 2qa1_A PGAE, polyketide oxygen 95.8 0.028 9.7E-07 57.6 9.5 36 158-214 10-45 (500)
334 3fmw_A Oxygenase; mithramycin, 95.8 0.039 1.3E-06 57.6 10.6 34 160-214 50-83 (570)
335 3da1_A Glycerol-3-phosphate de 95.8 0.046 1.6E-06 56.9 11.2 51 280-346 182-232 (561)
336 3qvp_A Glucose oxidase; oxidor 95.7 0.0072 2.5E-07 63.1 4.8 38 16-54 16-53 (583)
337 1n4w_A CHOD, cholesterol oxida 95.7 0.0087 3E-07 61.5 5.1 36 19-56 5-40 (504)
338 3eag_A UDP-N-acetylmuramate:L- 95.6 0.036 1.2E-06 53.4 8.9 72 18-117 3-76 (326)
339 1w4x_A Phenylacetone monooxyge 95.6 0.035 1.2E-06 57.5 9.4 34 160-214 17-50 (542)
340 3ihg_A RDME; flavoenzyme, anth 95.6 0.032 1.1E-06 57.7 9.0 36 381-417 301-341 (535)
341 3fwz_A Inner membrane protein 95.5 0.015 5.2E-07 48.4 5.3 36 17-54 5-40 (140)
342 2g1u_A Hypothetical protein TM 95.5 0.017 5.8E-07 49.0 5.6 37 17-55 17-53 (155)
343 3q9t_A Choline dehydrogenase a 95.5 0.0095 3.2E-07 62.2 4.7 37 18-55 5-41 (577)
344 1gpe_A Protein (glucose oxidas 95.4 0.013 4.6E-07 61.3 5.3 38 17-56 22-60 (587)
345 1coy_A Cholesterol oxidase; ox 95.4 0.013 4.3E-07 60.4 5.0 36 18-55 10-45 (507)
346 3rp8_A Flavoprotein monooxygen 95.4 0.043 1.5E-06 54.4 8.8 36 158-214 22-57 (407)
347 1pj5_A N,N-dimethylglycine oxi 95.3 0.055 1.9E-06 59.2 10.2 21 160-180 5-25 (830)
348 2jbv_A Choline oxidase; alcoho 95.3 0.014 5E-07 60.5 5.3 37 18-56 12-49 (546)
349 3cp8_A TRNA uridine 5-carboxym 95.2 0.11 3.7E-06 54.6 11.5 39 379-419 377-415 (641)
350 1lss_A TRK system potassium up 95.2 0.023 8E-07 46.8 5.3 33 19-53 4-36 (140)
351 3ps9_A TRNA 5-methylaminomethy 95.2 0.086 2.9E-06 56.2 11.0 33 160-213 273-305 (676)
352 2aqj_A Tryptophan halogenase, 95.2 0.12 4.2E-06 53.3 11.9 37 159-213 5-41 (538)
353 1y56_A Hypothetical protein PH 95.2 0.028 9.7E-07 57.5 6.9 34 160-215 109-142 (493)
354 1id1_A Putative potassium chan 95.2 0.027 9.2E-07 47.6 5.7 34 18-53 2-35 (153)
355 3llv_A Exopolyphosphatase-rela 95.1 0.02 7E-07 47.5 4.6 33 19-53 6-38 (141)
356 3nyc_A D-arginine dehydrogenas 95.0 0.17 5.8E-06 49.2 11.8 22 159-180 9-30 (381)
357 4hb9_A Similarities with proba 94.9 0.07 2.4E-06 52.6 8.7 34 160-214 2-35 (412)
358 2r0c_A REBC; flavin adenine di 94.9 0.2 6.7E-06 51.9 12.3 37 381-418 309-350 (549)
359 3qj4_A Renalase; FAD/NAD(P)-bi 94.8 0.062 2.1E-06 51.8 7.9 20 161-180 3-22 (342)
360 3fim_B ARYL-alcohol oxidase; A 94.8 0.011 3.9E-07 61.5 2.6 37 19-56 2-38 (566)
361 4g65_A TRK system potassium up 94.7 0.0097 3.3E-07 60.4 1.9 35 18-54 2-36 (461)
362 3c4n_A Uncharacterized protein 94.7 0.04 1.4E-06 54.7 6.4 21 160-180 37-57 (405)
363 2e4g_A Tryptophan halogenase; 94.5 0.16 5.4E-06 52.7 10.5 37 159-213 25-61 (550)
364 3vtf_A UDP-glucose 6-dehydroge 94.5 0.032 1.1E-06 55.8 4.9 37 17-55 19-55 (444)
365 3pvc_A TRNA 5-methylaminomethy 94.4 0.13 4.4E-06 54.9 10.0 34 159-213 264-297 (689)
366 2e5v_A L-aspartate oxidase; ar 94.4 0.087 3E-06 53.5 8.2 48 366-415 317-368 (472)
367 1pjq_A CYSG, siroheme synthase 94.4 0.096 3.3E-06 52.9 8.3 72 18-117 11-82 (457)
368 1kf6_A Fumarate reductase flav 94.3 0.27 9.1E-06 51.6 11.8 49 280-344 146-195 (602)
369 2h88_A Succinate dehydrogenase 94.2 0.17 5.7E-06 53.3 9.9 49 280-344 167-215 (621)
370 2hmt_A YUAA protein; RCK, KTN, 94.0 0.054 1.8E-06 44.7 4.6 33 19-53 6-38 (144)
371 3c85_A Putative glutathione-re 94.0 0.057 1.9E-06 47.0 5.0 35 18-54 38-73 (183)
372 2wdq_A Succinate dehydrogenase 94.0 0.24 8.2E-06 51.7 10.6 50 280-344 155-204 (588)
373 1vg0_A RAB proteins geranylger 93.8 0.062 2.1E-06 56.4 5.7 41 18-60 7-47 (650)
374 3ic5_A Putative saccharopine d 93.8 0.074 2.5E-06 42.1 5.1 34 19-53 5-38 (118)
375 3l4b_C TRKA K+ channel protien 93.6 0.054 1.8E-06 48.7 4.3 33 20-54 1-33 (218)
376 3doj_A AT3G25530, dehydrogenas 93.6 0.076 2.6E-06 50.7 5.5 39 14-54 16-54 (310)
377 1kyq_A Met8P, siroheme biosynt 93.4 0.068 2.3E-06 49.9 4.6 35 18-54 12-46 (274)
378 2x5o_A UDP-N-acetylmuramoylala 93.3 0.07 2.4E-06 53.7 4.9 71 18-117 4-74 (439)
379 2qcu_A Aerobic glycerol-3-phos 93.2 0.25 8.7E-06 50.4 9.1 50 280-346 161-210 (501)
380 3kkj_A Amine oxidase, flavin-c 93.1 0.06 2E-06 49.1 3.8 40 377-418 291-330 (336)
381 4dio_A NAD(P) transhydrogenase 93.0 0.11 3.7E-06 51.3 5.6 36 18-55 189-224 (405)
382 4a7p_A UDP-glucose dehydrogena 92.9 0.23 7.7E-06 49.9 8.0 37 18-56 7-43 (446)
383 1f0y_A HCDH, L-3-hydroxyacyl-C 92.7 0.14 4.6E-06 48.7 5.8 37 16-54 12-48 (302)
384 2dkh_A 3-hydroxybenzoate hydro 92.7 0.32 1.1E-05 51.4 9.2 38 380-418 341-383 (639)
385 3p2y_A Alanine dehydrogenase/p 92.6 0.11 3.8E-06 50.7 5.0 35 18-54 183-217 (381)
386 1lld_A L-lactate dehydrogenase 92.3 0.14 4.8E-06 48.9 5.3 34 18-53 6-41 (319)
387 3k6j_A Protein F01G10.3, confi 92.2 0.16 5.5E-06 51.0 5.8 37 17-55 52-88 (460)
388 1pzg_A LDH, lactate dehydrogen 92.1 0.17 5.9E-06 48.7 5.7 35 18-54 8-43 (331)
389 4hv4_A UDP-N-acetylmuramate--L 91.9 0.26 8.8E-06 50.3 7.1 73 16-118 19-92 (494)
390 1y6j_A L-lactate dehydrogenase 91.6 0.18 6.3E-06 48.2 5.2 37 18-54 6-42 (318)
391 3oj0_A Glutr, glutamyl-tRNA re 91.6 0.094 3.2E-06 43.7 2.8 33 19-53 21-53 (144)
392 1x13_A NAD(P) transhydrogenase 91.6 0.18 6.2E-06 49.9 5.3 36 18-55 171-206 (401)
393 1l7d_A Nicotinamide nucleotide 91.4 0.21 7.2E-06 49.2 5.6 36 18-55 171-206 (384)
394 4e12_A Diketoreductase; oxidor 91.2 0.24 8.2E-06 46.5 5.5 34 19-54 4-37 (283)
395 4ffl_A PYLC; amino acid, biosy 91.2 0.24 8.3E-06 48.2 5.7 35 19-55 1-35 (363)
396 3i83_A 2-dehydropantoate 2-red 91.1 0.22 7.6E-06 47.6 5.3 32 20-53 3-34 (320)
397 3pqe_A L-LDH, L-lactate dehydr 91.0 0.25 8.5E-06 47.4 5.5 37 17-53 3-39 (326)
398 3dtt_A NADP oxidoreductase; st 91.0 0.26 9E-06 45.1 5.5 37 16-54 16-52 (245)
399 2a9f_A Putative malic enzyme ( 91.0 0.24 8.1E-06 48.4 5.3 36 16-53 185-221 (398)
400 2raf_A Putative dinucleotide-b 90.9 0.28 9.5E-06 43.7 5.4 37 17-55 17-53 (209)
401 1ks9_A KPA reductase;, 2-dehyd 90.8 0.27 9.2E-06 46.0 5.4 34 20-55 1-34 (291)
402 3tl2_A Malate dehydrogenase; c 90.8 0.28 9.6E-06 46.8 5.6 35 17-53 6-41 (315)
403 1jw9_B Molybdopterin biosynthe 90.8 0.24 8.2E-06 45.5 5.0 34 19-54 31-65 (249)
404 2ew2_A 2-dehydropantoate 2-red 90.7 0.25 8.5E-06 46.8 5.2 33 19-53 3-35 (316)
405 1pjc_A Protein (L-alanine dehy 90.7 0.28 9.7E-06 47.8 5.6 35 18-54 166-200 (361)
406 2v6b_A L-LDH, L-lactate dehydr 90.6 0.25 8.7E-06 46.9 5.1 33 20-54 1-35 (304)
407 3gyx_A Adenylylsulfate reducta 90.6 0.22 7.5E-06 52.7 5.1 35 19-55 22-62 (662)
408 1vl6_A Malate oxidoreductase; 90.5 0.28 9.5E-06 47.8 5.3 36 16-53 189-225 (388)
409 3k96_A Glycerol-3-phosphate de 90.5 0.26 8.8E-06 48.0 5.2 36 17-54 27-62 (356)
410 2y0c_A BCEC, UDP-glucose dehyd 90.5 0.26 8.8E-06 50.1 5.3 36 18-55 7-42 (478)
411 2i6t_A Ubiquitin-conjugating e 90.5 0.27 9.1E-06 46.7 5.1 38 17-54 12-49 (303)
412 3q2o_A Phosphoribosylaminoimid 90.4 0.35 1.2E-05 47.6 6.1 40 14-55 9-48 (389)
413 2ewd_A Lactate dehydrogenase,; 90.3 0.31 1.1E-05 46.6 5.5 34 19-54 4-38 (317)
414 3ado_A Lambda-crystallin; L-gu 90.0 0.25 8.7E-06 47.1 4.5 35 18-54 5-39 (319)
415 2dpo_A L-gulonate 3-dehydrogen 90.0 0.25 8.6E-06 47.2 4.5 35 18-54 5-39 (319)
416 3ghy_A Ketopantoate reductase 90.0 0.3 1E-05 47.0 5.1 33 19-53 3-35 (335)
417 3gg2_A Sugar dehydrogenase, UD 90.0 0.3 1E-05 49.2 5.2 34 20-55 3-36 (450)
418 1y8q_A Ubiquitin-like 1 activa 89.9 0.54 1.8E-05 45.5 6.8 35 18-54 35-70 (346)
419 3gvi_A Malate dehydrogenase; N 89.9 0.36 1.2E-05 46.2 5.5 35 18-54 6-41 (324)
420 2hjr_A Malate dehydrogenase; m 89.8 0.37 1.3E-05 46.2 5.6 34 19-54 14-48 (328)
421 3l9w_A Glutathione-regulated p 89.7 0.27 9.3E-06 48.8 4.6 35 18-54 3-37 (413)
422 2eez_A Alanine dehydrogenase; 89.6 0.39 1.3E-05 47.0 5.6 35 18-54 165-199 (369)
423 3gpi_A NAD-dependent epimerase 89.6 0.4 1.4E-05 44.7 5.5 35 19-55 3-37 (286)
424 2vns_A Metalloreductase steap3 89.5 0.37 1.3E-05 43.1 5.1 34 18-53 27-60 (215)
425 1t2d_A LDH-P, L-lactate dehydr 89.5 0.42 1.4E-05 45.7 5.7 34 19-54 4-38 (322)
426 3ius_A Uncharacterized conserv 89.5 0.36 1.2E-05 44.9 5.2 34 19-54 5-38 (286)
427 3g79_A NDP-N-acetyl-D-galactos 89.5 0.32 1.1E-05 49.2 5.0 36 18-55 17-54 (478)
428 2o3j_A UDP-glucose 6-dehydroge 89.4 0.33 1.1E-05 49.3 5.2 38 18-55 8-45 (481)
429 3g0o_A 3-hydroxyisobutyrate de 89.3 0.4 1.4E-05 45.4 5.3 35 18-54 6-40 (303)
430 2vhw_A Alanine dehydrogenase; 89.3 0.43 1.5E-05 46.8 5.6 35 18-54 167-201 (377)
431 3pef_A 6-phosphogluconate dehy 89.3 0.38 1.3E-05 45.1 5.1 34 20-55 2-35 (287)
432 3phh_A Shikimate dehydrogenase 89.3 0.46 1.6E-05 44.1 5.6 34 19-54 118-151 (269)
433 1nyt_A Shikimate 5-dehydrogena 89.3 0.42 1.5E-05 44.4 5.4 34 18-53 118-151 (271)
434 1bg6_A N-(1-D-carboxylethyl)-L 89.2 0.39 1.3E-05 46.5 5.3 33 19-53 4-36 (359)
435 3p7m_A Malate dehydrogenase; p 89.2 0.46 1.6E-05 45.4 5.7 35 18-54 4-39 (321)
436 3hn2_A 2-dehydropantoate 2-red 89.2 0.27 9.2E-06 46.8 4.0 32 20-53 3-34 (312)
437 3e8x_A Putative NAD-dependent 89.1 0.43 1.5E-05 43.0 5.2 36 17-54 19-55 (236)
438 1guz_A Malate dehydrogenase; o 89.1 0.45 1.6E-05 45.2 5.6 35 20-54 1-35 (310)
439 4dgk_A Phytoene dehydrogenase; 89.0 0.2 6.7E-06 51.0 3.1 34 160-214 2-35 (501)
440 2pv7_A T-protein [includes: ch 88.9 0.48 1.6E-05 44.8 5.6 35 18-54 20-55 (298)
441 3c96_A Flavin-containing monoo 88.9 0.33 1.1E-05 48.0 4.6 35 160-214 5-39 (410)
442 3vku_A L-LDH, L-lactate dehydr 88.8 0.47 1.6E-05 45.4 5.4 36 18-53 8-43 (326)
443 2egg_A AROE, shikimate 5-dehyd 88.5 0.47 1.6E-05 44.8 5.2 34 18-53 140-174 (297)
444 3g17_A Similar to 2-dehydropan 88.4 0.36 1.2E-05 45.5 4.3 33 20-54 3-35 (294)
445 3pid_A UDP-glucose 6-dehydroge 88.4 0.47 1.6E-05 47.2 5.3 35 18-55 35-69 (432)
446 1hdo_A Biliverdin IX beta redu 88.3 0.63 2.1E-05 40.6 5.6 34 20-55 4-38 (206)
447 3ew7_A LMO0794 protein; Q8Y8U8 88.2 0.58 2E-05 41.4 5.4 33 20-54 1-34 (221)
448 1zej_A HBD-9, 3-hydroxyacyl-CO 88.0 0.45 1.5E-05 44.8 4.7 34 18-54 11-44 (293)
449 1mv8_A GMD, GDP-mannose 6-dehy 88.0 0.37 1.3E-05 48.2 4.3 34 20-55 1-34 (436)
450 1oju_A MDH, malate dehydrogena 87.9 0.5 1.7E-05 44.5 4.9 33 20-54 1-35 (294)
451 1ur5_A Malate dehydrogenase; o 87.8 0.58 2E-05 44.5 5.4 33 20-54 3-36 (309)
452 1a5z_A L-lactate dehydrogenase 87.7 0.51 1.7E-05 45.1 4.9 32 20-53 1-34 (319)
453 1p77_A Shikimate 5-dehydrogena 87.7 0.46 1.6E-05 44.2 4.5 34 18-53 118-151 (272)
454 2rir_A Dipicolinate synthase, 87.7 0.62 2.1E-05 44.0 5.5 36 16-53 154-189 (300)
455 3d4o_A Dipicolinate synthase s 87.7 0.64 2.2E-05 43.7 5.5 35 17-53 153-187 (293)
456 1jay_A Coenzyme F420H2:NADP+ o 87.7 0.6 2.1E-05 41.3 5.1 33 20-54 1-34 (212)
457 3qha_A Putative oxidoreductase 87.6 0.38 1.3E-05 45.4 3.9 35 19-55 15-49 (296)
458 4b4o_A Epimerase family protei 87.5 0.72 2.5E-05 43.2 5.8 35 20-56 1-36 (298)
459 2uyy_A N-PAC protein; long-cha 87.4 0.62 2.1E-05 44.2 5.4 34 19-54 30-63 (316)
460 1dlj_A UDP-glucose dehydrogena 87.4 0.48 1.6E-05 46.9 4.7 32 20-54 1-32 (402)
461 4huj_A Uncharacterized protein 87.4 0.33 1.1E-05 43.6 3.2 35 18-54 22-57 (220)
462 3d0o_A L-LDH 1, L-lactate dehy 87.3 0.72 2.5E-05 44.0 5.7 36 18-53 5-40 (317)
463 3ic5_A Putative saccharopine d 87.3 0.58 2E-05 36.7 4.4 35 159-213 5-39 (118)
464 3nep_X Malate dehydrogenase; h 87.3 0.59 2E-05 44.5 5.0 35 20-54 1-35 (314)
465 1z82_A Glycerol-3-phosphate de 87.3 0.62 2.1E-05 44.7 5.3 34 18-53 13-46 (335)
466 3ldh_A Lactate dehydrogenase; 87.3 0.68 2.3E-05 44.3 5.4 34 18-53 20-55 (330)
467 3pdu_A 3-hydroxyisobutyrate de 87.3 0.39 1.4E-05 45.0 3.8 33 20-54 2-34 (287)
468 1zcj_A Peroxisomal bifunctiona 87.2 0.67 2.3E-05 46.8 5.7 35 18-54 36-70 (463)
469 3fi9_A Malate dehydrogenase; s 87.2 0.81 2.8E-05 44.1 6.0 36 18-53 7-43 (343)
470 3ego_A Probable 2-dehydropanto 87.2 0.64 2.2E-05 44.1 5.2 32 19-53 2-33 (307)
471 3ond_A Adenosylhomocysteinase; 87.1 0.55 1.9E-05 47.3 4.9 35 17-53 263-297 (488)
472 4aj2_A L-lactate dehydrogenase 87.1 0.72 2.5E-05 44.2 5.5 37 17-53 17-53 (331)
473 3gvp_A Adenosylhomocysteinase 87.0 0.58 2E-05 46.3 4.9 36 17-54 218-253 (435)
474 4b63_A L-ornithine N5 monooxyg 87.0 0.64 2.2E-05 47.4 5.5 39 17-55 244-282 (501)
475 2g1u_A Hypothetical protein TM 87.0 0.74 2.5E-05 38.6 5.0 35 158-213 18-52 (155)
476 4dll_A 2-hydroxy-3-oxopropiona 87.0 0.56 1.9E-05 44.8 4.7 35 18-54 30-64 (320)
477 2h78_A Hibadh, 3-hydroxyisobut 86.9 0.52 1.8E-05 44.5 4.4 34 19-54 3-36 (302)
478 3tnl_A Shikimate dehydrogenase 86.9 0.74 2.5E-05 43.8 5.5 35 17-53 152-187 (315)
479 3dfz_A SIRC, precorrin-2 dehyd 86.9 0.55 1.9E-05 42.3 4.3 23 158-180 30-52 (223)
480 3jyo_A Quinate/shikimate dehyd 86.8 0.74 2.5E-05 43.1 5.4 35 17-53 125-160 (283)
481 2aef_A Calcium-gated potassium 86.8 0.29 9.8E-06 44.3 2.5 34 18-54 8-41 (234)
482 3h2s_A Putative NADH-flavin re 86.8 0.77 2.6E-05 40.8 5.3 33 20-54 1-34 (224)
483 1ldn_A L-lactate dehydrogenase 86.8 0.85 2.9E-05 43.4 5.9 36 18-53 5-40 (316)
484 4id9_A Short-chain dehydrogena 86.7 0.63 2.2E-05 44.6 5.0 38 17-56 17-55 (347)
485 1b8p_A Protein (malate dehydro 86.6 0.49 1.7E-05 45.4 4.1 36 18-53 4-45 (329)
486 3dhn_A NAD-dependent epimerase 86.4 0.7 2.4E-05 41.2 4.9 35 19-55 4-39 (227)
487 1txg_A Glycerol-3-phosphate de 86.4 0.64 2.2E-05 44.4 4.8 31 20-52 1-31 (335)
488 3l6d_A Putative oxidoreductase 86.3 0.84 2.9E-05 43.2 5.6 35 18-54 8-42 (306)
489 2xdo_A TETX2 protein; tetracyc 86.2 0.71 2.4E-05 45.3 5.2 35 159-214 26-60 (398)
490 3hwr_A 2-dehydropantoate 2-red 86.2 0.76 2.6E-05 43.8 5.2 34 17-53 17-50 (318)
491 3ihm_A Styrene monooxygenase A 86.2 0.49 1.7E-05 47.2 4.0 33 160-213 23-55 (430)
492 3qsg_A NAD-binding phosphogluc 86.1 0.69 2.4E-05 43.9 4.9 35 18-54 23-58 (312)
493 2zqz_A L-LDH, L-lactate dehydr 86.1 0.87 3E-05 43.6 5.6 36 18-53 8-43 (326)
494 3orq_A N5-carboxyaminoimidazol 86.1 0.97 3.3E-05 44.2 6.1 37 17-55 10-46 (377)
495 3pwz_A Shikimate dehydrogenase 86.1 0.88 3E-05 42.3 5.4 34 18-53 119-153 (272)
496 3t4e_A Quinate/shikimate dehyd 86.0 0.9 3.1E-05 43.2 5.5 35 17-53 146-181 (312)
497 3don_A Shikimate dehydrogenase 85.9 0.57 2E-05 43.7 4.0 35 18-54 116-151 (277)
498 3nks_A Protoporphyrinogen oxid 85.9 0.65 2.2E-05 46.7 4.8 34 160-213 3-37 (477)
499 3o8q_A Shikimate 5-dehydrogena 85.8 0.91 3.1E-05 42.4 5.4 35 17-53 124-159 (281)
500 3rui_A Ubiquitin-like modifier 85.8 0.88 3E-05 43.7 5.3 35 18-54 33-68 (340)
No 1
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=100.00 E-value=3.3e-66 Score=532.64 Aligned_cols=447 Identities=39% Similarity=0.644 Sum_probs=367.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-cCC----CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQ----EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~-~~~----~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.+++|+||||||||+++|..|++ ..+ +++|+|||+.+.+||+++|+++|+++..+++..++.+++...+++|+.+
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN 81 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence 35799999999999999999999 722 3999999999999999999999999988899999999999899999999
Q ss_pred eEEceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCC-CCCCCCCCCCCeEEEEcCCchH
Q 011535 93 VTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 93 ~~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~vvVIG~G~~g 171 (483)
+.++++++++++...||+||||||+..++++++||.++++++++.+++.||++++++ .+.. ++ .+++|+|||+|++|
T Consensus 82 v~v~~~v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~-~~-~~~~vvVIG~G~~g 159 (456)
T 1lqt_A 82 VVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSP-DL-SGARAVVIGNGNVA 159 (456)
T ss_dssp CCBTTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC-CC-CSSEEEEECCSHHH
T ss_pred EEECCEEEECCCeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchh-hc-CCCEEEEECCCHHH
Confidence 776655655555567999999999954788899999889999999999999998876 3332 34 67999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|..|++..++|..|||+.++++.|+.++.++|+++.|+++++..|+.+|+|++.++|++++.+++.++. .+.....
T Consensus 160 ~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~-~~~~~~~ 238 (456)
T 1lqt_A 160 LDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELD-GITDEDA 238 (456)
T ss_dssp HHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGT-TCCHHHH
T ss_pred HHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhc-cchhhhh
Confidence 999999999888899999999999999999999999999999999999999999999999999998877763 2222223
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceE
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~ 331 (483)
...++..+++.+.|.+++.. ......++|+++++..+.++. + ++++.++++..++++.++.|+.....+|+.+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~---~~~~~~~gv~i~~~~~~~~i~--~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~ 311 (456)
T 1lqt_A 239 AAVGKVCKQNIKVLRGYADR---EPRPGHRRMVFRFLTSPIEIK--G--KRKVERIVLGRNELVSDGSGRVAAKDTGERE 311 (456)
T ss_dssp HHHCHHHHHHHHHHHHHHTC---C-CTTSEEEEEECSEEEEEEE--C--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEE
T ss_pred hhccHHHHHHHHHHHHHhhc---CCCCCCceEEEEeCCCCeEEe--c--CCcEeEEEEEEEEecCCCcccccccCCCceE
Confidence 33467777778888776541 011223899999999999998 5 5678889888777654433333333456657
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+++||+||+|+|++|+++.++ ..+++|.+.+++.+ +.++.|+|||+|||+++|.++++.|+.+|..+|.+|
T Consensus 312 ~i~~d~vi~a~G~~p~~l~gl--------~~d~~g~i~vn~~~-rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i 382 (456)
T 1lqt_A 312 ELPAQLVVRSVGYRGVPTPGL--------PFDDQSGTIPNVGG-RINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTL 382 (456)
T ss_dssp EEECSEEEECSCEECCCCTTS--------CCBTTTTBCCEETT-EETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHH
T ss_pred EEEcCEEEEccccccCCCCCC--------cccCCCCeeECCCC-cCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHH
Confidence 899999999999999875443 34445666666653 336889999999999999987768999999999999
Q ss_pred HHHHhcCcCCCC-CCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 412 SEDLEQGVLASS-SGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 412 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
+.++.++.+... .....+.+..+..+|+.+++.+++|.+|++||++|+.+|+..||+|+||++++|||+++.
T Consensus 383 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~g~~r~k~~~~~~m~~~~~ 455 (456)
T 1lqt_A 383 IKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGL 455 (456)
T ss_dssp HHHHHHHHHTTCSCCC--CHHHHHHHHHHHHCTTCEEHHHHHHHHHHHHHHHGGGTSSCCCCCSHHHHHHHHC
T ss_pred HHHHHhCcccccccCCCCCchHHHHHHHHHcCCCeecHHHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHhc
Confidence 999987655310 001245778899999999999999999999999999999999999999999999999874
No 2
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=100.00 E-value=4.6e-65 Score=524.71 Aligned_cols=447 Identities=47% Similarity=0.780 Sum_probs=365.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+||||||||+++|..|++.+++.+|+|||+.+.+||++++++.|+++..+++...+.++++..+++|+.++.+++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 84 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR 84 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEee
Confidence 46899999999999999999999987799999999999999999999899988888888888999999999999988766
Q ss_pred EEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHH
Q 011535 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~ 177 (483)
++++.+....||+||||||+..++.+++||.+.++++++.++..||+.++++.....++ .+++|+|||+|++|+|+|..
T Consensus 85 ~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~-~~~~vvVIGgG~~g~e~A~~ 163 (460)
T 1cjc_A 85 DVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARI 163 (460)
T ss_dssp TBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHH
T ss_pred EEEeccceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCC-CCCEEEEECCCHHHHHHHHH
Confidence 56555544579999999999645778999999899999999999999988775544344 57999999999999999999
Q ss_pred HhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHH
Q 011535 178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257 (483)
Q Consensus 178 L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (483)
|++++++|..|||++++++.|+..++++|+|+.|+++.+++||++|++++.++|++++.+++.++.. ........++.
T Consensus 164 L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~--~~~~~~~~~~~ 241 (460)
T 1cjc_A 164 LLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARP 241 (460)
T ss_dssp HHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTT--HHHHTTTSCHH
T ss_pred HhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcc--hhhhhhhccHH
Confidence 9999999999999999999999999999999999999999999999999999999998887766531 11111123456
Q ss_pred HHHHHHHHHHHHHhcC-----CCCCCCcceEEEeecCCcceeecccCCCC-ceEEEEEeeeeeeCCCCCceeeccCCceE
Q 011535 258 QRRVYELLSKAAASAS-----SQPMLGQRELHFVFFRKPDSFLESNERSG-HVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (483)
Q Consensus 258 ~~r~~~~l~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~v~~~~~~~g-~v~~v~~~~~~l~~~~~g~~~~~~~g~~~ 331 (483)
.+|+.+.|.+++.... ..+....+||+++++..+.++. +++++ ++.+|++..+.+..+ .+....+.+|+.+
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~--~~~~~~~v~~v~~~~~~l~~~-~~~~~~~~~g~~~ 318 (460)
T 1cjc_A 242 RKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGI-GEATRAVPTGDVE 318 (460)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESS-GGGCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEE--cCCCCceEEEEEEEEEEEccc-cCCCcccCCCceE
Confidence 6677777766653100 0000123899999999999998 41226 888898887665421 1111222355567
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCc-ccCCCCeeeecCCCCCCcc-cCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGI-VPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~-~~~~~G~v~v~~~~~~~t~-~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
+++||+||+|+|++|+++. |+ ..+++|.+.+|+. ++++ +|+|||+|||+++|.+++..|+.+|+.+|.
T Consensus 319 ~i~~d~Vi~a~G~~p~~l~--------gl~~~d~~g~i~vn~~--~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~ 388 (460)
T 1cjc_A 319 DLPCGLVLSSIGYKSRPID--------PSVPFDPKLGVVPNME--GRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 388 (460)
T ss_dssp EEECSEEEECCCEECCCCC--------TTSCCBTTTTBCCEET--TEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHH
T ss_pred EEEcCEEEECCCCCCCCCC--------CCcccccCCCeeECCC--CcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHH
Confidence 9999999999999998743 44 4555667777776 6677 799999999998999877789999999999
Q ss_pred HHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 410 SISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 410 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
+|+.++.++.++.. ..+....+.++|+.+++.+++|.+|++||++|+.+|+..||+|+||++++|||+++.
T Consensus 389 ~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~w~~id~~e~~~g~~~g~~r~k~~~~~~m~~~~~ 459 (460)
T 1cjc_A 389 ILLQDLKAGHLPSG---PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLG 459 (460)
T ss_dssp HHHHHHHHTCSCCS---CCCTHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHHHHTSSCCCCCCHHHHHHHTT
T ss_pred HHHHHHHhCcCCCC---CCCchhHHHHHHHHcCCCeecHHHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHhc
Confidence 99999988766421 134667889999999999999999999999999999999999999999999999874
No 3
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=100.00 E-value=8.1e-41 Score=343.28 Aligned_cols=321 Identities=21% Similarity=0.314 Sum_probs=246.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+||||||||+++|..|++.+ ++|+|||+.+.+||++.|++ |.+...+++.....++++..+++|+.++.++
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 196 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVG 196 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence 46789999999999999999999999 99999999999999999988 8877778888888888888899999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecC--CCCCCC-CC--CCCCCCCeEEEEcCCchH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG--HPDGKN-LS--PDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~--~~~~~~-~~--~~~~~~~~vvVIG~G~~g 171 (483)
.+++++++...||+||||||+..++.+++||.+.++++++.+|....+. ..+... .. .....+++|+|||+|++|
T Consensus 197 ~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a 276 (456)
T 2vdc_G 197 RDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTA 276 (456)
T ss_dssp TTBCHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHH
T ss_pred cEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhH
Confidence 6666665556799999999996677889999998999988776543211 000000 00 011268999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|..+.+ .+.++|++++|++... +|....+
T Consensus 277 ~d~A~~~~r--------------------~Ga~~Vtiv~r~~~~~----------------------------~p~~~~e 308 (456)
T 2vdc_G 277 MDCVRTAIR--------------------QGATSVKCLYRRDRKN----------------------------MPGSQRE 308 (456)
T ss_dssp HHHHHHHHH--------------------TTCSEEEEECSSCSTT----------------------------CSSCHHH
T ss_pred HHHHHHHHH--------------------cCCCEEEEEEeCCccC----------------------------CCCCHHH
Confidence 999999886 5778899999987542 2221111
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeecc-CCc
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGE 329 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~-~g~ 329 (483)
.+.+. +.||+++++..++++. + ++++.++++...++. .+.+|+..+.. +|+
T Consensus 309 ----------~~~~~-------------~~Gv~~~~~~~~~~i~--~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~ 361 (456)
T 2vdc_G 309 ----------VAHAE-------------EEGVEFIWQAAPEGFT--G--DTVVTGVRAVRIHLGVADATGRQTPQVIEGS 361 (456)
T ss_dssp ----------HHHHH-------------HTTCEEECCSSSCCEE--E--EEEEETTEEEEEEEEEEEECTTCCEEEEEEE
T ss_pred ----------HHHHH-------------HCCCEEEeCCCceEEe--C--CCcEEEEEEEEEEecccCCcCCccccccCCc
Confidence 01121 5689999999999997 4 566666666554432 12234433222 455
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
..++++|+||+|+|++|++.. .+.+..++.++++|+|.+|+.. ++|+.|+|||+|||++++..++ .|+.+|+.+|.
T Consensus 362 ~~~i~aD~Vi~A~G~~p~~~~--~~l~~~gl~~~~~G~i~vd~~~-~~Ts~~~VfA~GD~~~g~~~v~-~A~~~G~~aA~ 437 (456)
T 2vdc_G 362 EFTVQADLVIKALGFEPEDLP--NAFDEPELKVTRWGTLLVDHRT-KMTNMDGVFAAGDIVRGASLVV-WAIRDGRDAAE 437 (456)
T ss_dssp EEEEECSEEEECSCEECCCHH--HHHHSTTSCBCTTSSBCCCTTT-CBCSSTTEEECGGGGSSCCSHH-HHHHHHHHHHH
T ss_pred EEEEECCEEEECCCCCCCcch--hhcccCCeeECCCCCEEECCCC-CcCCCCCEEEeccccCCchHHH-HHHHHHHHHHH
Confidence 578999999999999997510 1446678888999999999864 6699999999999998887777 89999999999
Q ss_pred HHHHHHhcCc
Q 011535 410 SISEDLEQGV 419 (483)
Q Consensus 410 ~I~~~l~~~~ 419 (483)
+|..+|.+..
T Consensus 438 ~i~~~L~~~~ 447 (456)
T 2vdc_G 438 GIHAYAKAKA 447 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhcCC
Confidence 9999998753
No 4
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.6e-33 Score=274.35 Aligned_cols=286 Identities=19% Similarity=0.269 Sum_probs=190.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC-----ChHHHHHHHHHHHhcCCeEEEe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP-----ETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~-----~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
..++|+||||||||++||.+|++.+ ++|+|||+.. +|| ++..+..+.++ ...++.........+.+..+..
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~~~-~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRAN--LKTVMIERGI-PGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY 81 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC-CCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc
Confidence 4589999999999999999999999 9999999864 555 44444444333 2234555555555555555554
Q ss_pred CeEEc-------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 92 NVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 92 ~~~v~-------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
+.... ..+........||+||||||+ .|+.|++||.+. .++.+..... . ....+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs-~~~~~~ipG~~~~~~~~v~~~~~~~----~---------~~~~~k~ 147 (312)
T 4gcm_A 82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGA-EYKKIGVPGEQELGGRGVSYCAVCD----G---------AFFKNKR 147 (312)
T ss_dssp CCCCEEEECSSCEEEECSSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHHH----G---------GGGTTCE
T ss_pred eeeeeeeeeecceeeccCCeEEEeceeEEcccC-ccCcCCCCChhhhCCccEEeeeccC----c---------cccCCCE
Confidence 43321 122233334569999999998 688889999763 2232211110 0 0115789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ ...+||++.|++.+....
T Consensus 148 vvViGgG~ig~E~A~~l~~---------------------~g~~Vtlv~~~~~~~~~~---------------------- 184 (312)
T 4gcm_A 148 LFVIGGGDSAVEEGTFLTK---------------------FADKVTIVHRRDELRAQR---------------------- 184 (312)
T ss_dssp EEEECCSHHHHHHHHHHTT---------------------TCSEEEEECSSSSCCSCH----------------------
T ss_pred EEEECCCHHHHHHHHHHHh---------------------cCCEEEEEecccccCcch----------------------
Confidence 9999999999999999985 346899999987542110
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
.. ....+. ..++..........+. . .+..........
T Consensus 185 -------~~----------~~~~~~-------------~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~---------- 221 (312)
T 4gcm_A 185 -------IL----------QDRAFK-------------NDKIDFIWSHTLKSIN--E-KDGKVGSVTLTS---------- 221 (312)
T ss_dssp -------HH----------HHHHHH-------------CTTEEEECSEEEEEEE--E-ETTEEEEEEEEE----------
T ss_pred -------hH----------HHHHHH-------------hcCcceeeecceeeee--c-cccccccceeee----------
Confidence 00 001111 4456555554444443 1 122222111111
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-CcchhHhh
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTGIIATN 400 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~~~~~a 400 (483)
..+++...+++|.|++++|++|+. .+....++ .+++|+|.+|++ ++|++|||||+|||+.. +..+. .|
T Consensus 222 ---~~~~~~~~~~~d~v~~~~g~~~~~----~~~~~~g~-~~~~G~I~vd~~--~~Ts~pgIyA~GDv~~~~~~~~~-~A 290 (312)
T 4gcm_A 222 ---TKDGSEETHEADGVFIYIGMKPLT----APFKDLGI-TNDVGYIVTKDD--MTTSVPGIFAAGDVRDKGLRQIV-TA 290 (312)
T ss_dssp ---TTTCCEEEEECSEEEECSCEEESC----GGGGGGTC-BCTTSCBCCCTT--SBCSSTTEEECSTTBSCSCCSHH-HH
T ss_pred ---ecCCceeEEeeeeEEeecCCCcCc----hhHHhcce-ecCCCeEeeCCC--CccCCCCEEEEeecCCCcchHHH-HH
Confidence 225566799999999999999976 34445555 456899999987 88999999999999864 45555 79
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011535 401 LYCAEETVASISEDLEQ 417 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l~~ 417 (483)
+.+|+.+|.+|.++|++
T Consensus 291 ~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 291 TGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 5
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=2.6e-33 Score=274.33 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=198.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC----CCCceec-----cc--CCCCCChHHHHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT----PFGLVRS-----GV--APDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~----~ggl~~~-----g~--~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.++|+||||||||++||.+|++.+ ++|+|||+.+. ++|.+.. .+ .|.....+++...+.+.+...+.
T Consensus 4 ~yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~ 81 (314)
T 4a5l_A 4 IHDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGT 81 (314)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCc
Confidence 479999999999999999999999 99999999753 3443321 11 12223456777778888888888
Q ss_pred EEEeCeEEce-------EEEecc-eeeccCEEEEccCCCCCCCCCCCCCCCCCe--eecceeeeeecCCCCCCCCCCCCC
Q 011535 88 SFFGNVTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGV--HSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 88 ~~~~~~~v~~-------~~~~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v--~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
.+........ .+...+ ....||+||||||+ .|+.+++||.+.... .+...+. ... ....
T Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~-~~~~~~ipG~~~~~~~~~~~~~~~---~~~-------~~~~ 150 (314)
T 4a5l_A 82 TIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA-TAKRMHVPGEDKYWQNGVSACAIC---DGA-------VPIF 150 (314)
T ss_dssp EEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHHH---HTT-------SGGG
T ss_pred EEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc-cccccCCCccccccccceeeehhh---hhh-------hhhc
Confidence 8877665422 122222 23469999999999 688889999763211 1111111 111 0112
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .+ .+|+++.|.......
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~--------------------~G-~~Vt~v~~~~~~~~~------------------- 190 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTK--------------------YG-SKVIILHRRDAFRAS------------------- 190 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTT--------------------TS-SEEEEECSSSSCCSC-------------------
T ss_pred CCCeEEEECCChHHHHHHHHHHH--------------------hC-Ceeeeeccccccccc-------------------
Confidence 57899999999999999999986 34 579999987643210
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
.. ...+.. ...++..++...+.++. . .+....++++...
T Consensus 191 -----------~~-------------~~~~~~---------~~~~~~~~~~~~~~~i~--~-~~~~~~~~~~~~~----- 229 (314)
T 4a5l_A 191 -----------KT-------------MQERVL---------NHPKIEVIWNSELVELE--G-DGDLLNGAKIHNL----- 229 (314)
T ss_dssp -----------HH-------------HHHHHH---------TCTTEEEECSEEEEEEE--E-SSSSEEEEEEEET-----
T ss_pred -----------ch-------------hhhhhh---------cccceeeEeeeeeEEEE--e-eeeccceeEEeec-----
Confidence 00 000000 14566777777777776 3 3455556655441
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchh
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~ 397 (483)
.+++.++++||.|++++|++|+. .+.. ..+..+++|.+ ++++ ++|++|||||+|||+.++...+
T Consensus 230 --------~~~~~~~i~~d~vi~a~G~~pn~----~~l~-~~~~~~~~G~i-v~~~--~~Ts~pgIyA~GDv~~~~~~~~ 293 (314)
T 4a5l_A 230 --------VSGEYKVVPVAGLFYAIGHSPNS----KFLG-GQVKTADDGYI-LTEG--PKTSVDGVFACGDVCDRVYRQA 293 (314)
T ss_dssp --------TTCCEEEEECSEEEECSCEEESC----GGGT-TSSCBCTTSCB-CCBT--TBCSSTTEEECSTTTCSSCCCH
T ss_pred --------ccccceeeccccceEecccccCh----hHhc-ccceEcCCeeE-eCCC--CccCCCCEEEEEeccCCcchHH
Confidence 24566799999999999999987 2333 34677888987 4555 7899999999999998775434
Q ss_pred HhhHHHHHHHHHHHHHHHhc
Q 011535 398 ATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~~ 417 (483)
..|+.+|+.+|.+|.++|+.
T Consensus 294 ~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 294 IVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999864
No 6
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=2.7e-33 Score=276.73 Aligned_cols=291 Identities=15% Similarity=0.175 Sum_probs=211.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC----CCCCceeccc----CCCC---CChHHHHHHHHHHHhcC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----TPFGLVRSGV----APDH---PETKIVINQFSRVVQHE 85 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~----~~ggl~~~g~----~p~~---~~~~~~~~~~~~~~~~~ 85 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+ .+||.+.+.. .|.+ ....++..++.+.+.+.
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKF 97 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999 9999999954 6788765421 1333 34568888888999889
Q ss_pred CeEEEeCeEEceE-------EEe----cceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCC
Q 011535 86 RCSFFGNVTLGSS-------VSL----SELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKN 151 (483)
Q Consensus 86 ~v~~~~~~~v~~~-------~~~----~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~ 151 (483)
+++++.+++...+ +.. ......||+||+|||+ .+..+++||.+ ..++.+..... ...
T Consensus 98 gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~----~~~---- 168 (338)
T 3itj_A 98 GTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA-SAKRMHLPGEETYWQKGISACAVCD----GAV---- 168 (338)
T ss_dssp TCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHHHH----TTS----
T ss_pred CCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC-CcCCCCCCCchhccCccEEEchhcc----cch----
Confidence 9999998844321 222 1123469999999999 57777888854 12333221111 100
Q ss_pred CCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCC
Q 011535 152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK 231 (483)
Q Consensus 152 ~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~ 231 (483)
....+++++|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 169 ---~~~~~~~v~vvG~G~~g~e~a~~l~~--------------------~-g~~v~~v~~~~~~~~--~----------- 211 (338)
T 3itj_A 169 ---PIFRNKPLAVIGGGDSACEEAQFLTK--------------------Y-GSKVFMLVRKDHLRA--S----------- 211 (338)
T ss_dssp ---GGGTTSEEEEECSSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCS--C-----------
T ss_pred ---hhcCCCEEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEEcCCccCC--C-----------
Confidence 01257899999999999999999986 3 458999998875321 0
Q ss_pred CeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEee
Q 011535 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (483)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~ 311 (483)
..+.+.+.+ ..||+++++..+.++. . +++.+..+++.+
T Consensus 212 ---------------------------~~~~~~l~~------------~~gv~i~~~~~v~~i~--~-~~~~~~~v~~~~ 249 (338)
T 3itj_A 212 ---------------------------TIMQKRAEK------------NEKIEILYNTVALEAK--G-DGKLLNALRIKN 249 (338)
T ss_dssp ---------------------------HHHHHHHHH------------CTTEEEECSEEEEEEE--E-SSSSEEEEEEEE
T ss_pred ---------------------------HHHHHHHHh------------cCCeEEeecceeEEEE--c-ccCcEEEEEEEE
Confidence 011122210 4599999999999998 4 355677777765
Q ss_pred eeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee-cCCCCCCcccCceeeeccCC
Q 011535 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK-NISGDSSQVENGLYVCGWLK 390 (483)
Q Consensus 312 ~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v-~~~~~~~t~~p~vya~Gd~~ 390 (483)
. .+++..+++||.||+|+|++|+. .+... ++.++++|++.+ +.. ++|+.|+|||+|||+
T Consensus 250 ~-------------~~g~~~~i~~D~vi~a~G~~p~~----~~~~~-~l~~~~~G~i~v~~~~--~~t~~~~vya~GD~~ 309 (338)
T 3itj_A 250 T-------------KKNEETDLPVSGLFYAIGHTPAT----KIVAG-QVDTDEAGYIKTVPGS--SLTSVPGFFAAGDVQ 309 (338)
T ss_dssp T-------------TTTEEEEEECSEEEECSCEEECC----GGGBT-TBCBCTTSCBCCCTTS--SBCSSTTEEECGGGG
T ss_pred C-------------CCCceEEEEeCEEEEEeCCCCCh----hHhhC-ceEecCCCcEEEcCcc--cccCCCCEEEeeccC
Confidence 1 14556789999999999999976 34444 888888999985 554 889999999999998
Q ss_pred CC-CcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 391 RG-PTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 391 ~g-~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+ +..+. .|+.+|..+|.+|.++|.+.
T Consensus 310 ~~~~~~~~-~A~~~g~~aa~~i~~~l~~~ 337 (338)
T 3itj_A 310 DSKYRQAI-TSAGSGCMAALDAEKYLTSL 337 (338)
T ss_dssp CSSCCCHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcccee-eehhhhHHHHHHHHHHHhcC
Confidence 75 45554 89999999999999999764
No 7
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=6.9e-33 Score=271.08 Aligned_cols=286 Identities=19% Similarity=0.242 Sum_probs=210.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEE-EecCCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~l-ie~~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v~~ 89 (483)
.+++|+||||||||+++|..|++.+ ++|+| ||+ +.+||.+.+. ..|.++ ...++..++.+.+.+.++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGG--LKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHT--CSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCC--CCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence 4579999999999999999999998 99999 999 6667765432 123433 55688888999999999999
Q ss_pred EeCeEEce------EEE--e--cceeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCC
Q 011535 90 FGNVTLGS------SVS--L--SELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDL 156 (483)
Q Consensus 90 ~~~~~v~~------~~~--~--~~~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~ 156 (483)
+.+..... .+. + .. ...||+||+|||+ .+..+++||.+. .++++...... . .
T Consensus 80 ~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~----~---------~ 144 (315)
T 3r9u_A 80 EMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGS-APKKAGFKGEDEFFGKGVSTCATCDG----F---------F 144 (315)
T ss_dssp ECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHHHHG----G---------G
T ss_pred EEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCC-CCCCCCCCChhhcCCCeEEeeecccc----c---------c
Confidence 88854432 111 1 12 4569999999998 677778888763 34433221110 0 1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEE
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~ 236 (483)
..+++++|||+|++|+|+|..|.+ . ..+|+++.|++.+. ..
T Consensus 145 ~~~~~v~viG~g~~~~e~a~~l~~--------------------~-g~~v~~~~~~~~~~--~~---------------- 185 (315)
T 3r9u_A 145 YKNKEVAVLGGGDTALEEALYLAN--------------------I-CSKIYLIHRRDEFR--AA---------------- 185 (315)
T ss_dssp GTTSEEEEECCBHHHHHHHHHHHT--------------------T-SSEEEEECSSSSCB--SC----------------
T ss_pred cCcCEEEEECCCHHHHHHHHHHHh--------------------h-CCEEEEEEeCCCCC--CC----------------
Confidence 156899999999999999999986 3 46899999886531 01
Q ss_pred eccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC
Q 011535 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (483)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~ 316 (483)
+... .+.+. +.||+++++..+.++. . +++++..+++..
T Consensus 186 ------------------~~~~---~~~~~-------------~~gv~~~~~~~v~~i~--~-~~~~~~~v~~~~----- 223 (315)
T 3r9u_A 186 ------------------PSTV---EKVKK-------------NEKIELITSASVDEVY--G-DKMGVAGVKVKL----- 223 (315)
T ss_dssp ------------------HHHH---HHHHH-------------CTTEEEECSCEEEEEE--E-ETTEEEEEEEEC-----
T ss_pred ------------------HHHH---HHHHh-------------cCCeEEEeCcEEEEEE--c-CCCcEEEEEEEc-----
Confidence 0000 01111 6799999999999997 4 355676676652
Q ss_pred CCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccC---CCC-cccCCCCeeeecCCCCCCcccCceeeeccCCC-
Q 011535 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDN---HKG-IVPNIRGRVLKNISGDSSQVENGLYVCGWLKR- 391 (483)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~---~~g-~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~- 391 (483)
.+|+..++++|.||+|+|++|++ .+.. ..| +..+++|++.+|++ ++|+.|+|||+|||+.
T Consensus 224 ---------~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~~~~g~l~~~~~g~i~vd~~--~~t~~~~v~a~GD~~~~ 288 (315)
T 3r9u_A 224 ---------KDGSIRDLNVPGIFTFVGLNVRN----EILKQDDSKFLCNMEEGGQVSVDLK--MQTSVAGLFAAGDLRKD 288 (315)
T ss_dssp ---------TTSCEEEECCSCEEECSCEEECC----GGGBCTTSCBSSCBCTTSCBCCCTT--CBCSSTTEEECGGGBTT
T ss_pred ---------CCCCeEEeecCeEEEEEcCCCCc----hhhhcccccceeeecCCCcEEeCCC--cccCCCCEEEeecccCC
Confidence 14555689999999999999976 2323 255 88888999999997 7899999999999985
Q ss_pred CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 392 GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 392 g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
++.... .|+.+|+.+|.+|.++|.+.
T Consensus 289 ~~~~~~-~A~~~g~~aa~~i~~~l~~~ 314 (315)
T 3r9u_A 289 APKQVI-CAAGDGAVAALSAMAYIESL 314 (315)
T ss_dssp CCCCHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhh-hHHhhHHHHHHHHHHHHHhc
Confidence 455555 79999999999999999764
No 8
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=100.00 E-value=3.4e-34 Score=320.94 Aligned_cols=314 Identities=18% Similarity=0.235 Sum_probs=232.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
+.++|+||||||||++||..|++.| + +|+|||+.+.+||.+.+++ |.+...+++.....++++..|++|+.++.++
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G--~~~Vtv~E~~~~~GG~~~~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 262 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 262 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCcEEEEeCCCCCCccccccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence 4679999999999999999999999 8 7999999999999998888 7777777777777778888899999998875
Q ss_pred e-EEEeccee-eccCEEEEccCCCCCCCCCC-CCCC-CCCeeecceeeeeecCC--CCCCCCCCC-CCCCCeEEEEcCCc
Q 011535 97 S-SVSLSELR-QLYHVVVLAYGAESDRALGI-PGED-LIGVHSAREFVWWYNGH--PDGKNLSPD-LKSTDTAVILGQGN 169 (483)
Q Consensus 97 ~-~~~~~~~~-~~yd~vvlAtG~~~~~~~~i-pg~~-~~~v~~a~~~~~~~~~~--~~~~~~~~~-~~~~~~vvVIG~G~ 169 (483)
. +++++++. ..||+||||||+..++.+++ +|.+ .++++++.+|....+.. ......... ...+++|+|||||+
T Consensus 263 ~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~ 342 (1025)
T 1gte_A 263 ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGD 342 (1025)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSH
T ss_pred cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCCh
Confidence 3 45554443 46999999999854666554 4543 56899888776433210 000000000 11356999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..+.+ .+.++|++++|++.... +...
T Consensus 343 ~g~e~A~~~~~--------------------~G~~~Vtvv~r~~~~~~----------------------------~~~~ 374 (1025)
T 1gte_A 343 TAFDCATSALR--------------------CGARRVFLVFRKGFVNI----------------------------RAVP 374 (1025)
T ss_dssp HHHHHHHHHHH--------------------TTCSEEEEECSSCGGGC----------------------------CSCH
T ss_pred HHHHHHHHHHH--------------------cCCCEEEEEEecChhhC----------------------------CCCH
Confidence 99999999986 67789999999874321 1111
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
.+. +.+. +.||+++++..+.++. . +++++.++++...+. +++|..... +|+
T Consensus 375 ~e~----------~~~~-------------~~Gv~~~~~~~~~~i~--~-~~g~v~~v~~~~~~~--~~~g~~~~~-~g~ 425 (1025)
T 1gte_A 375 EEV----------ELAK-------------EEKCEFLPFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKWNED-EDQ 425 (1025)
T ss_dssp HHH----------HHHH-------------HTTCEEECSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCEEEE-EEE
T ss_pred HHH----------HHHH-------------HcCCEEEeCCCceEEE--c-cCCeEEEEEEEEeEE--cCCCCcccC-CCc
Confidence 111 1111 5689999999999997 4 467888888765443 223432222 344
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
..++++|+||+|+|++|+.. .|... .|+.++++|+|.+|+.. ++|+.|+|||+|||+.++..++ .|+.+|+.+|
T Consensus 426 ~~~i~aD~Vi~A~G~~~~~~---~l~~~~~gl~~~~~G~I~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA 500 (1025)
T 1gte_A 426 IVHLKADVVISAFGSVLRDP---KVKEALSPIKFNRWDLPEVDPET-MQTSEPWVFAGGDIVGMANTTV-ESVNDGKQAS 500 (1025)
T ss_dssp EEEEECSEEEECSCEECCCH---HHHHHTTTSCBCTTSSBCCCTTT-CBCSSTTEEECSGGGCSCCCHH-HHHHHHHHHH
T ss_pred eEEEECCEEEECCCCCCCch---hhhhcccCceECCCCCEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHHH
Confidence 56899999999999987431 23333 47888889999999733 7899999999999998887777 7999999999
Q ss_pred HHHHHHHh
Q 011535 409 ASISEDLE 416 (483)
Q Consensus 409 ~~I~~~l~ 416 (483)
.+|..+|.
T Consensus 501 ~~i~~~L~ 508 (1025)
T 1gte_A 501 WYIHKYIQ 508 (1025)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 9
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.2e-32 Score=268.18 Aligned_cols=286 Identities=20% Similarity=0.230 Sum_probs=205.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCC---CChHHHHHHHHHHHhcCCeEEEe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~---~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
.++|+||||||||+++|..|++.+ .+|+|||+. .+||.+.+. ..|.+ ....++...+.+.+.+.+++++.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 84 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQ--LSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM 84 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC--CcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence 579999999999999999999998 999999998 566655421 11332 23557777888888888998877
Q ss_pred CeEEceE----------EEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCC
Q 011535 92 NVTLGSS----------VSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 92 ~~~v~~~----------~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
+.....+ +...++ ...||+||+|||+ .++.+++||.+. .+++.... .... ..
T Consensus 85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~i~g~~~~~~~~~~~~~~----~~~~---------~~ 150 (325)
T 2q7v_A 85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA-DPRKLGIPGEDNFWGKGVSTCAT----CDGF---------FY 150 (325)
T ss_dssp CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHH----HHGG---------GG
T ss_pred eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhccCceEEEecc----CCHH---------Hc
Confidence 5443221 122222 2469999999998 577778888652 23332111 1100 11
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|++|+|+|..|.+ . ..+|+++.|++.+. +.
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~--~~----------------- 190 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTK--------------------F-ADEVTVIHRRDTLR--AN----------------- 190 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTT--------------------T-CSEEEEECSSSSCC--SC-----------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEeCCCcCC--cc-----------------
Confidence 56899999999999999999985 3 46899999886431 00
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+ .+.+.+. ...||+++++..+.++. . ++++..+++...
T Consensus 191 -----------------~----~~~~~l~------------~~~gv~i~~~~~v~~i~--~--~~~v~~v~~~~~----- 228 (325)
T 2q7v_A 191 -----------------K----VAQARAF------------ANPKMKFIWDTAVEEIQ--G--ADSVSGVKLRNL----- 228 (325)
T ss_dssp -----------------H----HHHHHHH------------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEET-----
T ss_pred -----------------h----HHHHHHH------------hcCCceEecCCceEEEc--c--CCcEEEEEEEEC-----
Confidence 0 0111111 14699999999999997 4 566666766531
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC-cch
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-TGI 396 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-~~~ 396 (483)
.+|+..+++||.||+|+|++|+. ++.... +.++++|++.+|++ ++|+.|+|||+|||+..+ ...
T Consensus 229 --------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~-~~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~ 293 (325)
T 2q7v_A 229 --------KTGEVSELATDGVFIFIGHVPNT----AFVKDT-VSLRDDGYVDVRDE--IYTNIPMLFAAGDVSDYIYRQL 293 (325)
T ss_dssp --------TTCCEEEEECSEEEECSCEEESC----GGGTTT-SCBCTTSCBCCBTT--TBCSSTTEEECSTTTCSSCCCH
T ss_pred --------CCCcEEEEEcCEEEEccCCCCCh----HHHhhh-cccCCCccEecCCC--CccCCCCEEEeecccCccHHHH
Confidence 13454689999999999999986 344444 66778899999997 779999999999998763 444
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCc
Q 011535 397 IATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
. .|+.+|+.+|.+|.++|.+.+
T Consensus 294 ~-~A~~~g~~aa~~i~~~l~~~~ 315 (325)
T 2q7v_A 294 A-TSVGAGTRAAMMTERQLAALE 315 (325)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHC-
T ss_pred H-HHHHHHHHHHHHHHHHHHHhh
Confidence 4 799999999999999998764
No 10
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=3.3e-32 Score=267.08 Aligned_cols=286 Identities=21% Similarity=0.275 Sum_probs=210.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCC--ChHHHHHHHHHHHhcCCeEEEeC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP--ETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~--~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+. +||.+.+. ..|.++ ...++..++.+.+.+.+++++..
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYM--LKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD 90 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred ccCEEEECccHHHHHHHHHHHHCC--CcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999998 999999998 77766531 114333 34678888888888888888874
Q ss_pred eEEce-------EEEecc-eeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 93 VTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 93 ~~v~~-------~~~~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.+... .+.+.+ ....||+||+|||+ .+..+++||.+. .+++... +. .. ....+++
T Consensus 91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~~~~~~~~~-~~---~~---------~~~~~~~ 156 (323)
T 3f8d_A 91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGV-KRRKLGVPGEQEFAGRGISYCS-VA---DA---------PLFKNRV 156 (323)
T ss_dssp CEEEEEEC--CEEEEESSSCEEEEEEEEECCCC-EECCCCCTTTTTTBTTTEESCH-HH---HG---------GGGTTCE
T ss_pred EEEEEEecCCEEEEEECCCCEEEcCEEEECcCC-CCccCCCCchhhhcCCceEEec-cC---CH---------hHcCCCE
Confidence 43321 234444 23569999999999 477778888763 4443211 11 00 1125789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
++|||+|++|+|+|..|.+ . ..+|+++.|++.+..
T Consensus 157 v~vvG~G~~~~e~a~~l~~--------------------~-g~~v~~~~~~~~~~~------------------------ 191 (323)
T 3f8d_A 157 VAVIGGGDSALEGAEILSS--------------------Y-STKVYLIHRRDTFKA------------------------ 191 (323)
T ss_dssp EEEECCSHHHHHHHHHHHH--------------------H-SSEEEEECSSSSCCS------------------------
T ss_pred EEEECCCHHHHHHHHHHHH--------------------h-CCeEEEEEeCCCCCc------------------------
Confidence 9999999999999999985 2 357999998865321
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
. + .+.+.+. ...||+++++..+.++. . ++++..+++.+.
T Consensus 192 ------~------~----~~~~~~~------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~--------- 230 (323)
T 3f8d_A 192 ------Q------P----IYVETVK------------KKPNVEFVLNSVVKEIK--G--DKVVKQVVVENL--------- 230 (323)
T ss_dssp ------C------H----HHHHHHH------------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEET---------
T ss_pred ------C------H----HHHHHHH------------hCCCcEEEeCCEEEEEe--c--cCceeEEEEEEC---------
Confidence 0 0 0111111 14599999999999997 4 466666766541
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---CcchhH
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGIIA 398 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~~~ 398 (483)
.+|+..++++|.||+|+|++|+. ++.+..++..+++|++.+|++ ++|+.|+|||+|||+.. +....
T Consensus 231 ----~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~g~~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~~~- 299 (323)
T 3f8d_A 231 ----KTGEIKELNVNGVFIEIGFDPPT----DFAKSNGIETDTNGYIKVDEW--MRTSVPGVFAAGDCTSAWLGFRQVI- 299 (323)
T ss_dssp ----TTCCEEEEECSEEEECCCEECCH----HHHHHTTCCBCTTSSBCCCTT--CBCSSTTEEECSTTBSTTTTCCCHH-
T ss_pred ----CCCceEEEEcCEEEEEECCCCCh----hHHhhcCeeecCCCcEecCCC--ceecCCCEEEcceecCCCCccccee-
Confidence 13555689999999999999985 355667888888999999987 78999999999999875 44555
Q ss_pred hhHHHHHHHHHHHHHHHhcCc
Q 011535 399 TNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.|+.+|..+|.+|.++|.+.+
T Consensus 300 ~A~~~g~~aa~~i~~~l~~~~ 320 (323)
T 3f8d_A 300 TAVAQGAVAATSAYRYVTEKK 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred ehhhHHHHHHHHHHHHHHHhh
Confidence 799999999999999998753
No 11
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=3e-32 Score=269.12 Aligned_cols=296 Identities=18% Similarity=0.240 Sum_probs=206.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec----CCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----LPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~----~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v 87 (483)
.++|+||||||||+++|..|++.+ ++|+|||+ ...++|.+.+. -.|.++ ...++...+.+.+...++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 85 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT 85 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999998 99999998 45566654321 113332 345677778888888899
Q ss_pred EEEeCeEEce-------EEEecceeeccCEEEEccCCCCCCCCCCCCCCC-CCeeecceeee--eecCCCCCCCCCCCCC
Q 011535 88 SFFGNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGEDL-IGVHSAREFVW--WYNGHPDGKNLSPDLK 157 (483)
Q Consensus 88 ~~~~~~~v~~-------~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~-~~v~~a~~~~~--~~~~~~~~~~~~~~~~ 157 (483)
+++.+..... .+.++.....||+||+|||+ .+..+++||.+. .+++....+.. +..... +..
T Consensus 86 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 157 (333)
T 1vdc_A 86 TIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA-VAKRLSFVGSGEVLGGFWNRGISACAVCDGAA-------PIF 157 (333)
T ss_dssp EEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE-EECCCCCBTCSSSSSCCBTTTEESCHHHHTTS-------GGG
T ss_pred EEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCC-CcCCCCCCCccccccccccCcEEEeccCccch-------hhc
Confidence 9988763221 23332234579999999998 466777888653 22221111110 011110 012
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~--------------------~-g~~V~lv~~~~~~~~--~----------------- 197 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTK--------------------Y-GSKVYIIHRRDAFRA--S----------------- 197 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCS--C-----------------
T ss_pred CCCeEEEECCChHHHHHHHHHHh--------------------c-CCeEEEEecCCcCCc--c-----------------
Confidence 57899999999999999999975 3 358999998865310 0
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC--ceEEEEEeeeeee
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSGVHFEKTALK 315 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g--~v~~v~~~~~~l~ 315 (483)
+. +.+.+ . .+.||+++++..+.++. . +++ ++..+.+...
T Consensus 198 -----------------~~----~~~~~---~---------~~~gv~i~~~~~v~~i~--~-~~~~~~v~~v~~~~~--- 238 (333)
T 1vdc_A 198 -----------------KI----MQQRA---L---------SNPKIDVIWNSSVVEAY--G-DGERDVLGGLKVKNV--- 238 (333)
T ss_dssp -----------------HH----HHHHH---H---------TCTTEEEECSEEEEEEE--E-SSSSSSEEEEEEEET---
T ss_pred -----------------HH----HHHHH---H---------hCCCeeEecCCceEEEe--C-CCCccceeeEEEEec---
Confidence 00 01111 1 16799999999999997 4 232 6666766531
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG 395 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~ 395 (483)
.+|+..+++||.||+|+|++|+. ++.+ .++..+++|++.+|+++ ++|+.|+|||+|||+..+..
T Consensus 239 ----------~~g~~~~i~~D~vi~a~G~~p~~----~~~~-~~l~~~~~G~i~vd~~~-~~t~~~~vya~GD~~~~~~~ 302 (333)
T 1vdc_A 239 ----------VTGDVSDLKVSGLFFAIGHEPAT----KFLD-GGVELDSDGYVVTKPGT-TQTSVPGVFAAGDVQDKKYR 302 (333)
T ss_dssp ----------TTCCEEEEECSEEEECSCEEESC----GGGT-TSSCBCTTSCBCCCTTS-CBCSSTTEEECGGGGCSSCC
T ss_pred ----------CCCceEEEecCEEEEEeCCccch----HHhh-ccccccCCCCEEechhh-cccCCCCEEEeeeccCCCch
Confidence 13455689999999999999986 3433 46777888999999875 68999999999999876433
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 396 IIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
....|+.+|+.+|.+|.++|.+.+
T Consensus 303 ~~~~A~~~g~~aa~~i~~~l~~~~ 326 (333)
T 1vdc_A 303 QAITAAGTGCMAALDAEHYLQEIG 326 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHhHHHHHHHHHHHHHhcc
Confidence 334799999999999999998764
No 12
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=7.2e-32 Score=264.90 Aligned_cols=287 Identities=18% Similarity=0.230 Sum_probs=204.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCC--CChHHHHHHHHHHHhcCCeEEEeC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH--PETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~--~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.++|+||||||||+++|..|++.+ ++|+|||+. .+||.+... ..|++ ....++...+.+.+.+.+++++..
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSG--FSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV 92 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence 478999999999999999999998 999999994 456544321 11322 234567777788888888998875
Q ss_pred eEEceE-------EEecceeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 93 VTLGSS-------VSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 93 ~~v~~~-------~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.....+ +..+.....||+||+|||+ .++.+++||.+. .+++..... .. ....++++
T Consensus 93 ~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~-~~~~~~i~g~~~~~~~~~~~~~~~----~~---------~~~~~~~v 158 (319)
T 3cty_A 93 EVRSIKKTQGGFDIETNDDTYHAKYVIITTGT-THKHLGVKGESEYFGKGTSYCSTC----DG---------YLFKGKRV 158 (319)
T ss_dssp CEEEEEEETTEEEEEESSSEEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHHH----HG---------GGGBTSEE
T ss_pred eEEEEEEeCCEEEEEECCCEEEeCEEEECCCC-CcccCCCCChHHhCCceEEEEEec----ch---------hhcCCCeE
Confidence 443221 3332334569999999998 567777887642 233221110 00 01146899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ ...+|+++.|++.+.. .
T Consensus 159 ~viG~G~~g~e~a~~l~~---------------------~g~~V~~i~~~~~~~~--~---------------------- 193 (319)
T 3cty_A 159 VTIGGGNSGAIAAISMSE---------------------YVKNVTIIEYMPKYMC--E---------------------- 193 (319)
T ss_dssp EEECCSHHHHHHHHHHTT---------------------TBSEEEEECSSSSCCS--C----------------------
T ss_pred EEECCCHHHHHHHHHHHh---------------------hCCcEEEEEcCCccCC--C----------------------
Confidence 999999999999999985 3468999998764310 0
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
+ .+.+.+. +.||+++++..+.++. . +++++..+.+...
T Consensus 194 ------------~----~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~~---------- 231 (319)
T 3cty_A 194 ------------N----AYVQEIK-------------KRNIPYIMNAQVTEIV--G-DGKKVTGVKYKDR---------- 231 (319)
T ss_dssp ------------H----HHHHHHH-------------HTTCCEECSEEEEEEE--E-SSSSEEEEEEEET----------
T ss_pred ------------H----HHHHHHh-------------cCCcEEEcCCeEEEEe--c-CCceEEEEEEEEc----------
Confidence 0 0112222 5689999999999997 4 3455666666531
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHH
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLY 402 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~ 402 (483)
.+|+..++++|.||+|+|++|+. ++....|+.++++|++.+|++ ++|+.|+|||+|||+..+......|+.
T Consensus 232 ---~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~~A~~ 302 (319)
T 3cty_A 232 ---TTGEEKLIETDGVFIYVGLIPQT----SFLKDSGVKLDERGYIVVDSR--QRTSVPGVYAAGDVTSGNFAQIASAVG 302 (319)
T ss_dssp ---TTCCEEEECCSEEEECCCEEECC----GGGTTSCCCBCTTSCBCCCTT--CBCSSTTEEECSTTBTTCCCCHHHHHH
T ss_pred ---CCCceEEEecCEEEEeeCCccCh----HHHhhccccccCCccEeCCCC--CccCCCCEEEeecccCcchhhHHHHHH
Confidence 13444589999999999999986 455667888888899999987 779999999999998764334447999
Q ss_pred HHHHHHHHHHHHHhcC
Q 011535 403 CAEETVASISEDLEQG 418 (483)
Q Consensus 403 ~g~~~a~~I~~~l~~~ 418 (483)
+|+.+|.+|.++|.+.
T Consensus 303 ~g~~aa~~i~~~l~~~ 318 (319)
T 3cty_A 303 DGCKAALSLYSDSISK 318 (319)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999998753
No 13
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=1.2e-31 Score=262.00 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=204.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CC--CCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--AP--DHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p--~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
++|+||||||||+++|..|++.+ .+|+|||+. +||.+.. ++ .+ .+....++..++.+.+++.+++++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 58999999999999999999998 999999863 5655432 11 01 122345777788888888899999884
Q ss_pred EE-c----------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 94 TL-G----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 94 ~v-~----------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
.+ . ..+.++++ ...||+||+|||+ .+..+++||.+. .+++..... .. ....
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~----~~---------~~~~ 143 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA-KWRNMNVPGEDQYRTKGVTYCPHC----DG---------PLFK 143 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHH----HG---------GGGB
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhcccceeEEeccC----cH---------hhcC
Confidence 43 1 12344444 3579999999998 466677888641 223321110 00 0125
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+. +. +
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~---------------------~g~~Vtlv~~~~~~~--~~-~---------------- 183 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEMK--AD-Q---------------- 183 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------TBSEEEEECSSSSCC--SC-H----------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------hCCEEEEEEeCcccC--cc-H----------------
Confidence 7899999999999999999985 346899999886531 11 0
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
.+.+.+. ...||+++++..+.++. . +++++..+++.+.
T Consensus 184 ---------------------~~~~~l~------------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~~------ 221 (310)
T 1fl2_A 184 ---------------------VLQDKLR------------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR------ 221 (310)
T ss_dssp ---------------------HHHHHHH------------TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEET------
T ss_pred ---------------------HHHHHHh------------hCCCeEEecCCceEEEE--c-CCCcEEEEEEEEC------
Confidence 0112221 03689999999999997 4 3567777776541
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+|+..++++|.||+|+|++|+. ++... .+..+++|++.+|++ ++|+.|+|||+|||+..+...+.
T Consensus 222 -------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~-~l~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~ 287 (310)
T 1fl2_A 222 -------VSGDIHNIELAGIFVQIGLLPNT----NWLEG-AVERNRMGEIIIDAK--CETNVKGVFAAGDCTTVPYKQII 287 (310)
T ss_dssp -------TTCCEEEEECSEEEECSCEEESC----GGGTT-TSCBCTTSCBCCCTT--CBCSSTTEEECSTTBSCSSCCHH
T ss_pred -------CCCcEEEEEcCEEEEeeCCccCc----hHHhc-cccccCCCcEEcCCC--CccCCCCEEEeecccCCcchhhh
Confidence 13555689999999999999976 24343 367788899999987 67999999999999886644334
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 011535 399 TNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~ 418 (483)
.|+.+|+.+|.+|.++|.+.
T Consensus 288 ~A~~~g~~aa~~i~~~l~~~ 307 (310)
T 1fl2_A 288 IATGEGAKASLSAFDYLIRT 307 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred hhHhhHHHHHHHHHHHHHHh
Confidence 79999999999999999864
No 14
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=9.2e-32 Score=263.06 Aligned_cols=285 Identities=18% Similarity=0.238 Sum_probs=202.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecc----cCCCC---CChHHHHHHHHHHHhcCCeEEEe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g----~~p~~---~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
++|+||||||||+++|..|++.+ . +|+|||+. .+||.+.+. ..|.+ ....++..++.+.+.+.+++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 78 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGG--VKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM 78 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC
T ss_pred ceEEEECccHHHHHHHHHHHHCC--CCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 58999999999999999999998 8 99999996 455554321 11332 34567778888888888999887
Q ss_pred CeEEce-------EEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCC
Q 011535 92 NVTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (483)
Q Consensus 92 ~~~v~~-------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (483)
...... .+.+.++ ...||+||+|||+ .++.+++||.+. ++++...... .. ...++
T Consensus 79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~----~~---------~~~~~ 144 (311)
T 2q0l_A 79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG-SPKRTGIKGESEYWGKGVSTCATCD----GF---------FYKNK 144 (311)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE-EECCCCCBTHHHHBTTTEESCHHHH----GG---------GGTTS
T ss_pred EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC-CCCCCCCCChhhccCCcEEEeecCC----hh---------hcCCC
Confidence 544322 2333333 3469999999998 567777887531 3343221111 00 11568
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||+|++|+|+|..|.+ . ..+|+++.|++.+. +..
T Consensus 145 ~v~VvG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~--~~~------------------- 182 (311)
T 2q0l_A 145 EVAVLGGGDTAVEEAIYLAN--------------------I-CKKVYLIHRRDGFR--CAP------------------- 182 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHT--------------------T-SSEEEEECSSSSCC--SCH-------------------
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEeeCCccC--CCH-------------------
Confidence 99999999999999999986 3 35899999886431 110
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+.+.+. .+.||+++++..+.++. . +++.+..+.+...
T Consensus 183 -------------------~~~~~l~------------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~~-------- 220 (311)
T 2q0l_A 183 -------------------ITLEHAK------------NNDKIEFLTPYVVEEIK--G-DASGVSSLSIKNT-------- 220 (311)
T ss_dssp -------------------HHHHHHH------------TCTTEEEETTEEEEEEE--E-ETTEEEEEEEEET--------
T ss_pred -------------------HHHHHHh------------hCCCeEEEeCCEEEEEE--C-CCCcEeEEEEEec--------
Confidence 0111221 14699999999999997 4 2355655665431
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC----cccCCCCeeeecCCCCCCcccCceeeeccCCCC-Ccc
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG----IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTG 395 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g----~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~ 395 (483)
.+|+..++++|.||+|+|++|+. ++....+ +..+++|++.+|++ ++|+.|+|||+|||+.+ +..
T Consensus 221 -----~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~g~~~~l~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~ 289 (311)
T 2q0l_A 221 -----ATNEKRELVVPGFFIFVGYDVNN----AVLKQEDNSMLCKCDEYGSIVVDFS--MKTNVQGLFAAGDIRIFAPKQ 289 (311)
T ss_dssp -----TTCCEEEEECSEEEECSCEEECC----GGGBCTTSCBSSCBCTTSCBCCCTT--CBCSSTTEEECSTTBTTCCCC
T ss_pred -----CCCceEEEecCEEEEEecCccCh----hhhhcccccceeEeccCCCEEeCCc--cccCCCCeEEcccccCcchHH
Confidence 13444589999999999999985 3445543 77888899999987 77999999999999876 444
Q ss_pred hhHhhHHHHHHHHHHHHHHHhc
Q 011535 396 IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.. .|+.||+.+|.+|.++|.+
T Consensus 290 ~~-~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 290 VV-CAASDGATAALSVISYLEH 310 (311)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHHhHHHHHHHHHHHHhh
Confidence 44 7999999999999999864
No 15
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=8.2e-32 Score=265.44 Aligned_cols=286 Identities=18% Similarity=0.223 Sum_probs=212.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-------CCCCC--ChHHHHHHHHHHHhcCCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~v~~ 89 (483)
.++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.+.. .|.++ ...++..++.+.+.+.++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQ--ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI 84 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 479999999999999999999998 99999999999888764211 24443 35678888888888889999
Q ss_pred EeCeEEce---------EEEecceeeccCEEEEccCCC--CCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCC
Q 011535 90 FGNVTLGS---------SVSLSELRQLYHVVVLAYGAE--SDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPD 155 (483)
Q Consensus 90 ~~~~~v~~---------~~~~~~~~~~yd~vvlAtG~~--~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~ 155 (483)
+.+..+.. .+.+.++...||+||+|||+. .+..+++||.+. ..++. .+. +. ..
T Consensus 85 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~--~~~-------~~----~~ 151 (332)
T 3lzw_A 85 CLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY--FVD-------DL----QK 151 (332)
T ss_dssp ECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES--SCS-------CG----GG
T ss_pred EccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE--ecC-------CH----HH
Confidence 88765532 344445556799999999983 466677888652 12221 111 10 01
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeE
Q 011535 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (483)
Q Consensus 156 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~ 235 (483)
+ .+++++|||+|.+|+|+|..|.+ ...+|+++.|++.+..
T Consensus 152 ~-~~~~v~vvG~g~~~~e~a~~l~~---------------------~~~~v~~~~~~~~~~~------------------ 191 (332)
T 3lzw_A 152 F-AGRRVAILGGGDSAVDWALMLEP---------------------IAKEVSIIHRRDKFRA------------------ 191 (332)
T ss_dssp G-BTCEEEEECSSHHHHHHHHHHTT---------------------TBSEEEEECSSSSCSS------------------
T ss_pred c-CCCEEEEECCCHhHHHHHHHHHh---------------------hCCeEEEEEecCcCCc------------------
Confidence 2 47899999999999999999985 3458999998865310
Q ss_pred EeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee
Q 011535 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~ 315 (483)
... ..+.+. ++||+++++..+.++. . ++.+..+.+.+.
T Consensus 192 ------------~~~----------~~~~l~-------------~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~--- 229 (332)
T 3lzw_A 192 ------------HEH----------SVENLH-------------ASKVNVLTPFVPAELI--G--EDKIEQLVLEEV--- 229 (332)
T ss_dssp ------------CHH----------HHHHHH-------------HSSCEEETTEEEEEEE--C--SSSCCEEEEEET---
T ss_pred ------------cHH----------HHHHHh-------------cCCeEEEeCceeeEEe--c--CCceEEEEEEec---
Confidence 000 011122 6799999999999997 4 333556666541
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC---C
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR---G 392 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~---g 392 (483)
.+++.+++++|.||+|+|++|+. ++.+..++.. ++|++.+|++ ++|+.|+|||+|||+. +
T Consensus 230 ----------~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~~~~~-~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~ 292 (332)
T 3lzw_A 230 ----------KGDRKEILEIDDLIVNYGFVSSL----GPIKNWGLDI-EKNSIVVKST--METNIEGFFAAGDICTYEGK 292 (332)
T ss_dssp ----------TSCCEEEEECSEEEECCCEECCC----GGGGGSSCCE-ETTEEECCTT--SBCSSTTEEECGGGEECTTC
T ss_pred ----------CCCceEEEECCEEEEeeccCCCc----hHHhhcCccc-cCCeEEeCCC--CceecCCEEEccceecCCCC
Confidence 14556789999999999999976 4566677777 6899999987 7899999999999983 4
Q ss_pred CcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 393 PTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 393 ~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
+.... .|+.+|..+|.+|.+++.+..
T Consensus 293 ~~~~~-~A~~~g~~aa~~i~~~l~~~~ 318 (332)
T 3lzw_A 293 VNLIA-SGFGEAPTAVNNAKAYMDPKA 318 (332)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHHHCTTS
T ss_pred cceEe-eehhhHHHHHHHHHHhhChhh
Confidence 44454 799999999999999998753
No 16
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.9e-32 Score=268.76 Aligned_cols=291 Identities=20% Similarity=0.209 Sum_probs=207.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v~~ 89 (483)
...++|+||||||||+++|..|++.+ ++|+|||+. .+||.+.+. ..|.++ ...++..++.+.+.+.++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQ--LAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADL 88 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTT--CCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 45689999999999999999999998 999999975 566654331 113332 34577778888888889999
Q ss_pred EeCeEEceE------E-Eecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 90 FGNVTLGSS------V-SLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 90 ~~~~~v~~~------~-~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
+.+.....+ + .+.++ ...||+||+|||+ .+..+++||.+. .++++......+ +..
T Consensus 89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~~-------------~~~ 154 (335)
T 2a87_A 89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGA-AARYLQVPGEQELLGRGVSSCATCDGF-------------FFR 154 (335)
T ss_dssp ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCE-EECCCCCTHHHHTBTTTEESCHHHHGG-------------GGT
T ss_pred EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCC-CccCCCCCchHhccCCceEEeeccchh-------------hcC
Confidence 888744322 3 33333 3469999999998 566677887531 233322111110 125
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~--------------------~-g~~V~l~~~~~~~~~--~------------------ 193 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTR--------------------F-ARSVTLVHRRDEFRA--S------------------ 193 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTT--------------------T-CSEEEEECSSSSCSS--C------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------------------h-CCeEEEEEcCCcCCc--c------------------
Confidence 7899999999999999999985 3 468999998865321 0
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
..+.. +.+. +.||+++++..+.++. . ++.+..+.+...
T Consensus 194 ----------------~~~~~---~~~~-------------~~gV~v~~~~~v~~i~--~--~~~~~~v~~~~~------ 231 (335)
T 2a87_A 194 ----------------KIMLD---RARN-------------NDKIRFLTNHTVVAVD--G--DTTVTGLRVRDT------ 231 (335)
T ss_dssp ----------------TTHHH---HHHH-------------CTTEEEECSEEEEEEE--C--SSSCCEEEEEEE------
T ss_pred ----------------HHHHH---HHhc-------------cCCcEEEeCceeEEEe--c--CCcEeEEEEEEc------
Confidence 00000 1111 6799999999999997 4 445555666531
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC-cchh
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-TGII 397 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-~~~~ 397 (483)
.+|+..+++||.||+|+|++|++ ++.. .++..+++|++.+|+++ ++|+.|+|||+|||+..+ ....
T Consensus 232 -------~~g~~~~i~~D~vi~a~G~~p~~----~~~~-~~l~~~~~G~i~vd~~~-~~t~~~~iya~GD~~~~~~~~~~ 298 (335)
T 2a87_A 232 -------NTGAETTLPVTGVFVAIGHEPRS----GLVR-EAIDVDPDGYVLVQGRT-TSTSLPGVFAAGDLVDRTYRQAV 298 (335)
T ss_dssp -------TTSCCEEECCSCEEECSCEEECC----TTTB-TTBCBCTTSCBCCSTTS-SBCSSTTEEECGGGTCCSCCCHH
T ss_pred -------CCCceEEeecCEEEEccCCccCh----hHhh-cccccCCCccEEeCCCC-CccCCCCEEEeeecCCccHHHHH
Confidence 13444689999999999999986 2333 46778888999999865 789999999999998754 3444
Q ss_pred HhhHHHHHHHHHHHHHHHhcCcCC
Q 011535 398 ATNLYCAEETVASISEDLEQGVLA 421 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~~~~~~ 421 (483)
.|+.+|+.+|.+|.++|.+.+..
T Consensus 299 -~A~~~g~~aA~~i~~~l~~~~~~ 321 (335)
T 2a87_A 299 -TAAGSGCAAAIDAERWLAEHAAT 321 (335)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHhHHHHHHHHHHHhhcCcCc
Confidence 79999999999999999876543
No 17
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-31 Score=265.10 Aligned_cols=297 Identities=19% Similarity=0.222 Sum_probs=208.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-------CCCCC--ChHHHHHHHHHHHhcCCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~v~ 88 (483)
..++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.... .|.++ ...++..++.+.+...+++
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPV 81 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCE
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 3579999999999999999999998 99999999988887653211 12222 3456777788888888888
Q ss_pred EEeCeEEce--------EEEecce-eeccCEEEEccCCC--CCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCC
Q 011535 89 FFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 89 ~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~--~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
++.+..+.. .+.+.++ ...||+||+|||+. .+..++++|.+. +....+...+... .+.
T Consensus 82 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~---~~~~~~~~~~~~~-------~~~- 150 (335)
T 2zbw_A 82 YSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGERE---FEGRGVYYAVKSK-------AEF- 150 (335)
T ss_dssp EEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTT---TBTTTEESSCSCG-------GGG-
T ss_pred EEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhh---ccCcEEEEecCch-------hhc-
Confidence 887755422 2333333 35699999999984 366667887642 1111111111100 012
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+..
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~---------------------~g~~V~~v~~~~~~~~-------------------- 189 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLD---------------------TARRITLIHRRPQFRA-------------------- 189 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTT---------------------TSSEEEEECSSSSCCS--------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEcCCccCc--------------------
Confidence 57899999999999999999985 3458999999865321
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
. +...+++.+.+. +.||+++++..+.++. . ++++..+.+...
T Consensus 190 ---------~-------~~~~~~l~~~l~-------------~~gv~v~~~~~v~~i~--~--~~~~~~v~~~~~----- 231 (335)
T 2zbw_A 190 ---------H-------EASVKELMKAHE-------------EGRLEVLTPYELRRVE--G--DERVRWAVVFHN----- 231 (335)
T ss_dssp ---------C-------HHHHHHHHHHHH-------------TTSSEEETTEEEEEEE--E--SSSEEEEEEEET-----
T ss_pred ---------c-------HHHHHHHHhccc-------------cCCeEEecCCcceeEc--c--CCCeeEEEEEEC-----
Confidence 0 011122222332 6799999999999997 4 466666666431
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--cc
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--TG 395 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~--~~ 395 (483)
.+|+..++++|.||+|+|++|+. ++.+..++..+ +|++.+|++ ++|+.|+|||+|||+..+ ..
T Consensus 232 --------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~~~~~~-~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~ 296 (335)
T 2zbw_A 232 --------QTQEELALEVDAVLILAGYITKL----GPLANWGLALE-KNKIKVDTT--MATSIPGVYACGDIVTYPGKLP 296 (335)
T ss_dssp --------TTCCEEEEECSEEEECCCEEEEC----GGGGGSCCCEE-TTEEECCTT--CBCSSTTEEECSTTEECTTCCC
T ss_pred --------CCCceEEEecCEEEEeecCCCCc----hHhhhcceecc-CCeeeeCCC--CCCCCCCEEEeccccccCcchh
Confidence 13444689999999999999976 35566677766 689999987 779999999999998532 23
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcCcCC
Q 011535 396 IIATNLYCAEETVASISEDLEQGVLA 421 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~~~~ 421 (483)
....|+.+|..+|.+|..+|.+....
T Consensus 297 ~~~~A~~~g~~aa~~i~~~l~~~~~~ 322 (335)
T 2zbw_A 297 LIVLGFGEAAIAANHAAAYANPALKV 322 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 44479999999999999999876443
No 18
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=6.9e-32 Score=264.92 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=204.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCC---CChHHHHHHHHHHHhcCCeEEEe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~---~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
.++|+||||||||+++|..|++.+ ++|+|||+. .+||.+.+. ..|.+ ....++..++.+.+...+++++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999999999999998 999999975 566654331 11333 23457777788888888999988
Q ss_pred CeEEceE-----EE-ecc-eeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 92 NVTLGSS-----VS-LSE-LRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 92 ~~~v~~~-----~~-~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
+.....+ +. ..+ ....||+||+|||+ .+..+++||.+ ..++++......+ +..+++
T Consensus 82 ~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~ 147 (320)
T 1trb_A 82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACATSDGF-------------FYRNQK 147 (320)
T ss_dssp CCEEEEECSSSSEEEEESSCEEEEEEEEECCCE-EECCCCCHHHHHTBTTTEESCHHHHGG-------------GGTTSE
T ss_pred eeeeEEEecCCEEEEEeCCCEEEcCEEEECCCC-CcCCCCCCChHHhCCceeEecccCCcc-------------ccCCCe
Confidence 8744322 11 222 23469999999998 46666777743 1233322111100 125789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 148 v~ViG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~~--~--------------------- 183 (320)
T 1trb_A 148 VAVIGGGNTAVEEALYLSN--------------------I-ASEVHLIHRRDGFRA--E--------------------- 183 (320)
T ss_dssp EEEECSSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCC--C---------------------
T ss_pred EEEECCCHHHHHHHHHHHh--------------------c-CCeEEEEEeCCcccc--C---------------------
Confidence 9999999999999999985 3 458999998864310 0
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
+.+.+++.+.+. +.||++++++.+.++. . +++++.++++.+.
T Consensus 184 -------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~~--------- 225 (320)
T 1trb_A 184 -------------KILIKRLMDKVE-------------NGNIILHTNRTLEEVT--G-DQMGVTGVRLRDT--------- 225 (320)
T ss_dssp -------------HHHHHHHHHHHH-------------TSSEEEECSCEEEEEE--E-CSSSEEEEEEECC---------
T ss_pred -------------HHHHHHHHHhcc-------------cCCeEEEcCceeEEEE--c-CCCceEEEEEEec---------
Confidence 111222223332 6799999999999997 4 3456766766531
Q ss_pred eeeccC-CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC---CCCcccCceeeeccCCCCCcchh
Q 011535 322 QYAVGT-GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGPTGII 397 (483)
Q Consensus 322 ~~~~~~-g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~---~~~t~~p~vya~Gd~~~g~~~~~ 397 (483)
.+ |+..+++||.||+|+|++|++ ++.. .++..+ +|++.+++.+ .++|+.|+|||+|||+..+....
T Consensus 226 ----~~~g~~~~i~~D~vv~a~G~~p~~----~~~~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~ 295 (320)
T 1trb_A 226 ----QNSDNIESLDVAGLFVAIGHSPNT----AIFE-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQA 295 (320)
T ss_dssp ----TTCCCCEEEECSEEEECSCEEESC----GGGT-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCH
T ss_pred ----cCCCceEEEEcCEEEEEeCCCCCh----HHhc-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhh
Confidence 02 444689999999999999986 2433 456777 8999999862 13799999999999987643333
Q ss_pred HhhHHHHHHHHHHHHHHHhcC
Q 011535 398 ATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~~~ 418 (483)
..|+.+|..+|.+|.++|.+.
T Consensus 296 ~~A~~~g~~aa~~i~~~l~~~ 316 (320)
T 1trb_A 296 ITSAGTGCMAALDAERYLDGL 316 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhccHHHHHHHHHHHHHhc
Confidence 379999999999999999764
No 19
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.98 E-value=5.3e-31 Score=263.22 Aligned_cols=291 Identities=21% Similarity=0.223 Sum_probs=206.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------ccCCCCC--ChHHHHHHHHHHHhcCCe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--------GVAPDHP--ETKIVINQFSRVVQHERC 87 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--------g~~p~~~--~~~~~~~~~~~~~~~~~v 87 (483)
..++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.. .. |.++ ...++...+.+.+...++
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 89 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNN--ISCRIIESMPQLGGQLAALYPEKHIYDV-AGFPEVPAIDLVESLWAQAERYNP 89 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTCTTSEECCS-TTCSSEEHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCCcccccCCCcccccC-CCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3579999999999999999999998 999999999888876531 11 3332 346777788888888889
Q ss_pred EEEeCeEEce---------EEEecce-eeccCEEEEccCCC--CCCCCCCCC-CC-CC--CeeecceeeeeecCCCCCCC
Q 011535 88 SFFGNVTLGS---------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPG-ED-LI--GVHSAREFVWWYNGHPDGKN 151 (483)
Q Consensus 88 ~~~~~~~v~~---------~~~~~~~-~~~yd~vvlAtG~~--~~~~~~ipg-~~-~~--~v~~a~~~~~~~~~~~~~~~ 151 (483)
+++.+..+.. .+.+.++ ...||+||+|||+. .+..+++|| .+ .. +++.. +...
T Consensus 90 ~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~------~~~~----- 158 (360)
T 3ab1_A 90 DVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA------VKSV----- 158 (360)
T ss_dssp EEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS------CSCG-----
T ss_pred EEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe------cCCH-----
Confidence 9887755421 2333333 34699999999984 355567777 43 22 12211 1100
Q ss_pred CCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCC
Q 011535 152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK 231 (483)
Q Consensus 152 ~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~ 231 (483)
.+. .+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+...
T Consensus 159 --~~~-~~~~vvVvG~G~~g~e~A~~l~~---------------------~g~~V~lv~~~~~~~~~------------- 201 (360)
T 3ab1_A 159 --EDF-KGKRVVIVGGGDSALDWTVGLIK---------------------NAASVTLVHRGHEFQGH------------- 201 (360)
T ss_dssp --GGG-TTCEEEEECSSHHHHHHHHHTTT---------------------TSSEEEEECSSSSCSSC-------------
T ss_pred --HHc-CCCcEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEEcCCCCCCC-------------
Confidence 012 57899999999999999999985 24689999998653210
Q ss_pred CeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEee
Q 011535 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (483)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~ 311 (483)
+....++.+.+. +.||+++++..+.++. . +++++..+.+..
T Consensus 202 -----------------------~~~~~~l~~~~~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~ 242 (360)
T 3ab1_A 202 -----------------------GKTAHEVERARA-------------NGTIDVYLETEVASIE--E-SNGVLTRVHLRS 242 (360)
T ss_dssp -----------------------SHHHHSSHHHHH-------------HTSEEEESSEEEEEEE--E-ETTEEEEEEEEE
T ss_pred -----------------------HHHHHHHHHHhh-------------cCceEEEcCcCHHHhc--c-CCCceEEEEEEe
Confidence 011111112221 5689999999999997 4 356666666541
Q ss_pred eeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC
Q 011535 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (483)
Q Consensus 312 ~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~ 391 (483)
.+|+..++++|.||+|+|++|+. ++.+..++..+ +|++.+|++ ++|+.|+|||+|||+.
T Consensus 243 --------------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~~~~~~-~g~i~vd~~--~~t~~~~vya~GD~~~ 301 (360)
T 3ab1_A 243 --------------SDGSKWTVEADRLLILIGFKSNL----GPLARWDLELY-ENALVVDSH--MKTSVDGLYAAGDIAY 301 (360)
T ss_dssp --------------TTCCEEEEECSEEEECCCBCCSC----GGGGGSSCCEE-TTEEECCTT--SBCSSTTEEECSTTEE
T ss_pred --------------cCCCeEEEeCCEEEECCCCCCCH----HHHHhhccccc-cCeeeecCC--CcCCCCCEEEecCccC
Confidence 13444689999999999999976 35556677766 789999986 7799999999999985
Q ss_pred CC--cchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 392 GP--TGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 392 g~--~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.+ ......|+.+|..+|.+|..++.+.+
T Consensus 302 ~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 331 (360)
T 3ab1_A 302 YPGKLKIIQTGLSEATMAVRHSLSYIKPGE 331 (360)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CCCccceeehhHHHHHHHHHHHHhhcCCcc
Confidence 32 23344799999999999999997654
No 20
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=99.98 E-value=2.4e-31 Score=273.91 Aligned_cols=288 Identities=14% Similarity=0.169 Sum_probs=195.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC----CceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g----gl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++|+|||||+||++||..|++.+++.+|+|||+++.++ ++..+ .........++.....+.+.+.+++++.+..+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V 81 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY-FNHTINELHEARYITEEELRRQKIQLLLNREV 81 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC-----------------CCCCHHHHHHTTEEEECSCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh-hcCCCCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 69999999999999999999995559999999998765 22111 10111112222222344556678998887765
Q ss_pred ce------EEEe----cceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEE
Q 011535 96 GS------SVSL----SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (483)
Q Consensus 96 ~~------~~~~----~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 165 (483)
.. .+.+ ......||+||||||+ .|..+++||.+.+++++...+.....- .. ....+++++||
T Consensus 82 ~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~~----~~---~~~~~~~vvVi 153 (452)
T 3oc4_A 82 VAMDVENQLIAWTRKEEQQWYSYDKLILATGA-SQFSTQIRGSQTEKLLKYKFLSGALAA----VP---LLENSQTVAVI 153 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEECSEEEECCCC-CBCCCCCBTTTCTTEEEGGGCC----C----CH---HHHTCSEEEEE
T ss_pred EEEECCCCEEEEEecCceEEEEcCEEEECCCc-ccCCCCCCCCCCCCEEEeCCHHHHHHH----HH---HHhcCCEEEEE
Confidence 32 2322 1223469999999999 678888999888888876654321110 00 01246899999
Q ss_pred cCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCC
Q 011535 166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (483)
Q Consensus 166 G~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~ 245 (483)
|+|++|+|+|..|.+ .+ .+|+++.|.+.+...+...
T Consensus 154 GgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~d~----------------------- 189 (452)
T 3oc4_A 154 GAGPIGMEAIDFLVK--------------------MK-KTVHVFESLENLLPKYFDK----------------------- 189 (452)
T ss_dssp CCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTCCH-----------------------
T ss_pred CCCHHHHHHHHHHHh--------------------CC-CeEEEEEccCccccccCCH-----------------------
Confidence 999999999999986 34 5899999987654321111
Q ss_pred CCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeec
Q 011535 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (483)
Q Consensus 246 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~ 325 (483)
...+.+.+.+. ++||+++++..+.++. . +++.+ .+.+
T Consensus 190 ----------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v-~v~~---------------- 226 (452)
T 3oc4_A 190 ----------EMVAEVQKSLE-------------KQAVIFHFEETVLGIE--E-TANGI-VLET---------------- 226 (452)
T ss_dssp ----------HHHHHHHHHHH-------------TTTEEEEETCCEEEEE--E-CSSCE-EEEE----------------
T ss_pred ----------HHHHHHHHHHH-------------HcCCEEEeCCEEEEEE--c-cCCeE-EEEE----------------
Confidence 11122223332 7899999999999997 3 34544 3332
Q ss_pred cCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------ch
Q 011535 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GI 396 (483)
Q Consensus 326 ~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---------~~ 396 (483)
.+. +++||.||+|+|++|+. ++.+.. +.++++|++.+|++ ++|+.|+|||+|||+..+. ..
T Consensus 227 -~~g--~i~aD~Vv~A~G~~p~~----~~l~~~-~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~ 296 (452)
T 3oc4_A 227 -SEQ--EISCDSGIFALNLHPQL----AYLDKK-IQRNLDQTIAVDAY--LQTSVPNVFAIGDCISVMNEPVAETFYAPL 296 (452)
T ss_dssp -SSC--EEEESEEEECSCCBCCC----SSCCTT-SCBCTTSCBCCCTT--CBCSSTTEEECGGGBCEEEGGGTEEECCCC
T ss_pred -CCC--EEEeCEEEECcCCCCCh----HHHHhh-hccCCCCCEEECcC--ccCCCCCEEEEEeeEEeccccCCceeecch
Confidence 112 79999999999999987 233333 77888999999987 7899999999999986531 23
Q ss_pred hHhhHHHHHHHHHHHHH
Q 011535 397 IATNLYCAEETVASISE 413 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~ 413 (483)
...|..||+.+|.+|+.
T Consensus 297 ~~~A~~~g~~aa~~i~g 313 (452)
T 3oc4_A 297 VNNAVRTGLVVANNLEE 313 (452)
T ss_dssp HHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44799999999998864
No 21
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=99.98 E-value=2.2e-32 Score=280.05 Aligned_cols=281 Identities=15% Similarity=0.212 Sum_probs=187.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCC-ChH-HHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHP-ETK-IVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~-~~~-~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+||+||||||||++||..|++.+++.+|+|||+++..++. +.+.+ .... ... .+.....+++++.+++++.+..
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVI-GEVVEDRRYALAYTPEKFYDRKQITVKTYHE 79 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHH-TTSSCCGGGTBCCCHHHHHHHHCCEEEETEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHH-cCCccchhhhhhcCHHHHHHhcCCEEEeCCe
Confidence 4799999999999999999999878899999998764321 11100 0100 000 0111123344556888888765
Q ss_pred Ece------EEEecc------eeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCC
Q 011535 95 LGS------SVSLSE------LRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (483)
Q Consensus 95 v~~------~~~~~~------~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (483)
+.. .+.+.. ....||+||||||+ .|+.++++|.. ..++.++..+..++. ...+
T Consensus 80 V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs-~p~~p~i~g~~~~~~~~~~~~~~l~~~~~-----------~~~~ 147 (437)
T 4eqs_A 80 VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA-SANSLGFESDITFTLRNLEDTDAIDQFIK-----------ANQV 147 (437)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE-EECCCCCCCTTEECCSSHHHHHHHHHHHH-----------HHTC
T ss_pred EEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC-ccccccccCceEEeeccHHHHHHHHHhhh-----------ccCC
Confidence 521 122211 12469999999999 57777787743 111111111111111 0136
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~ 239 (483)
++++|||+|++|+|+|..+.+ .+ .+|+++.|.+.+...+.
T Consensus 148 ~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~ll~~~d------------------- 187 (437)
T 4eqs_A 148 DKVLVVGAGYVSLEVLENLYE--------------------RG-LHPTLIHRSDKINKLMD------------------- 187 (437)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEEESSSCCSTTSC-------------------
T ss_pred cEEEEECCccchhhhHHHHHh--------------------cC-Ccceeeeeecccccccc-------------------
Confidence 799999999999999999986 33 57999999876543222
Q ss_pred ccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCC
Q 011535 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (483)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~ 319 (483)
+...+.+.+.+. ++||+++++..+.++. + . .+.+.
T Consensus 188 ---------------~~~~~~~~~~l~-------------~~gV~i~~~~~v~~~~--~---~---~v~~~--------- 222 (437)
T 4eqs_A 188 ---------------ADMNQPILDELD-------------KREIPYRLNEEINAIN--G---N---EITFK--------- 222 (437)
T ss_dssp ---------------GGGGHHHHHHHH-------------HTTCCEEESCCEEEEE--T---T---EEEET---------
T ss_pred ---------------chhHHHHHHHhh-------------ccceEEEeccEEEEec--C---C---eeeec---------
Confidence 111122223333 6789999999888886 3 2 22221
Q ss_pred CceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc----
Q 011535 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG---- 395 (483)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~---- 395 (483)
++ ++++||.||+|+|++|+. .+.+..|+..+++|+|.+|++ ++|++|+|||+|||+..+..
T Consensus 223 -------~g--~~~~~D~vl~a~G~~Pn~----~~~~~~gl~~~~~G~I~vd~~--~~Ts~p~IyA~GDva~~~~~~~~~ 287 (437)
T 4eqs_A 223 -------SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDRKGFIPVNDK--FETNVPNIYAIGDIATSHYRHVDL 287 (437)
T ss_dssp -------TS--CEEECSEEEECCCEEESC----GGGTTSSCCCCTTSCEECCTT--CBCSSTTEEECGGGEEEEBSSSSS
T ss_pred -------CC--eEEeeeeEEEEeceecCc----HHHHhhhhhhccCCcEecCCC--ccCCCCCEEEEEEccCcccccCCc
Confidence 22 479999999999999986 466788999999999999998 78999999999999854321
Q ss_pred -----hhHhhHHHHHHHHHHHHH
Q 011535 396 -----IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 -----~~~~a~~~g~~~a~~I~~ 413 (483)
....|.+||+.+|+||+.
T Consensus 288 ~~~~~~a~~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 288 PASVPLAWGAHRAASIVAEQIAG 310 (437)
T ss_dssp EECCCSHHHHHHHHHHHHHHHHS
T ss_pred cccchhHHHHHHHHHHHHHHHcC
Confidence 233689999999999864
No 22
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=99.97 E-value=5.3e-32 Score=275.80 Aligned_cols=292 Identities=18% Similarity=0.163 Sum_probs=203.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..++|+|||||+||++||..|++.+++.+|+|||+.+.++.. +......+.....++.....+++...+++++.++.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 87 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE 87 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence 457999999999999999999999955569999999865321 11112233223333333344556677899999855
Q ss_pred Ec------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCC-CCeEEEEc
Q 011535 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS-TDTAVILG 166 (483)
Q Consensus 95 v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~vvVIG 166 (483)
+. +.+.+.++. ..||+||+|||+ .++.+++||.+.++++............ ..+.. +++++|||
T Consensus 88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~v~~~~~~~d~~~l~-------~~~~~~~~~vvViG 159 (415)
T 3lxd_A 88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGG-DPRRLSCVGADLAGVHAVRTKEDADRLM-------AELDAGAKNAVVIG 159 (415)
T ss_dssp EEEEETTTTEEEETTSCEEEEEEEEECCCE-ECCCCBTTSSCCBTEECCCSHHHHHHHH-------HHHHTTCCEEEEEC
T ss_pred EEEEECCCCEEEECCCCEEEeeEEEEccCC-ccCCCCCCCccccCEEEEcCHHHHHHHH-------HHhhhcCCeEEEEC
Confidence 42 245555543 479999999998 6888889998877777543322110000 00113 78999999
Q ss_pred CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCC
Q 011535 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP 246 (483)
Q Consensus 167 ~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~ 246 (483)
+|++|+|+|..|.+ .+ .+|+++.+.+.+.......+
T Consensus 160 gG~~g~e~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~~~~~----------------------- 195 (415)
T 3lxd_A 160 GGYIGLEAAAVLTK--------------------FG-VNVTLLEALPRVLARVAGEA----------------------- 195 (415)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSCHH-----------------------
T ss_pred CCHHHHHHHHHHHh--------------------cC-CeEEEEecCCchhhhhcCHH-----------------------
Confidence 99999999999986 34 57999999876532211111
Q ss_pred CcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeecc
Q 011535 247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG 326 (483)
Q Consensus 247 ~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~ 326 (483)
....+.+.+. ++||+++++..+.++. . +++++..+++.+
T Consensus 196 ----------~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~~v~l~d--------------- 234 (415)
T 3lxd_A 196 ----------LSEFYQAEHR-------------AHGVDLRTGAAMDCIE--G-DGTKVTGVRMQD--------------- 234 (415)
T ss_dssp ----------HHHHHHHHHH-------------HTTCEEEETCCEEEEE--E-SSSBEEEEEESS---------------
T ss_pred ----------HHHHHHHHHH-------------hCCCEEEECCEEEEEE--e-cCCcEEEEEeCC---------------
Confidence 1112222332 6799999999999997 4 456666665532
Q ss_pred CCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc----c------h
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT----G------I 396 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~----~------~ 396 (483)
| ++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+. | .
T Consensus 235 -G--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~ 303 (415)
T 3lxd_A 235 -G--SVIPADIVIVGIGIVPCV----GALISAGASGG-NG-VDVDEF--CRTSLTDVYAIGDCAAHANDFADGAVIRLES 303 (415)
T ss_dssp -S--CEEECSEEEECSCCEESC----HHHHHTTCCCS-SS-EECCTT--CBCSSTTEEECGGGEEEECGGGTTCEECCCS
T ss_pred -C--CEEEcCEEEECCCCccCh----HHHHhCCCCcC-CC-EEECCC--CCcCCCCEEEEEeeeeecCcccCCcceeech
Confidence 2 379999999999999986 35566677776 56 888887 7899999999999987554 2 1
Q ss_pred hHhhHHHHHHHHHHHHH
Q 011535 397 IATNLYCAEETVASISE 413 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~ 413 (483)
+..|..||+.+|.+|+.
T Consensus 304 ~~~A~~qg~~aa~~i~g 320 (415)
T 3lxd_A 304 VQNANDMATAAAKDICG 320 (415)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34799999999999974
No 23
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=99.97 E-value=1.9e-33 Score=292.05 Aligned_cols=321 Identities=16% Similarity=0.150 Sum_probs=197.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHH--hcCCeEEEeC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVV--QHERCSFFGN 92 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~--~~~~v~~~~~ 92 (483)
...+++|||||||+||+++|..|.+.+ ++|+|||+++++ +-.+.|.++.+..+..++...+...+ ...+++|+.+
T Consensus 39 ~~~KprVVIIGgG~AGl~~A~~L~~~~--~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~ 116 (502)
T 4g6h_A 39 HSDKPNVLILGSGWGAISFLKHIDTKK--YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA 116 (502)
T ss_dssp SCSSCEEEEECSSHHHHHHHHHSCTTT--CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE
T ss_pred CCCCCCEEEECCcHHHHHHHHHhhhCC--CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE
Confidence 345689999999999999999999887 999999999763 33344555444444444433344443 3457888877
Q ss_pred eEEce-----EEEec---------------------ceeeccCEEEEccCCCCCCCCCCCCCC-----CCCeeecceeee
Q 011535 93 VTLGS-----SVSLS---------------------ELRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVW 141 (483)
Q Consensus 93 ~~v~~-----~~~~~---------------------~~~~~yd~vvlAtG~~~~~~~~ipg~~-----~~~v~~a~~~~~ 141 (483)
..... .+++. .....||+||||||+ .++.+++||.+ +..+.++..+..
T Consensus 117 ~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs-~~~~~~ipG~~e~a~~l~t~~dA~~ir~ 195 (502)
T 4g6h_A 117 EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA-EPNTFGIPGVTDYGHFLKEIPNSLEIRR 195 (502)
T ss_dssp EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC-EECCTTCTTHHHHCEECSSHHHHHHHHH
T ss_pred EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc-ccccCCccCcccccCCCCCHHHHHHHHH
Confidence 65432 23221 122469999999999 57788999954 233333332222
Q ss_pred eecCCCCCCCC----CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 142 WYNGHPDGKNL----SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 142 ~~~~~~~~~~~----~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
.+....+.... ++......+++|||+|++|+|+|.+|.... ..++.. .+..+. ...+|+++.+.+.+..
T Consensus 196 ~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~----~~~l~~-~~~~~~--~~~~V~lve~~~~il~ 268 (502)
T 4g6h_A 196 TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYV----HQDLRK-FLPALA--EEVQIHLVEALPIVLN 268 (502)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHH----HHTHHH-HCHHHH--HHCEEEEECSSSSSST
T ss_pred HHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHH----HHHHHh-hccccc--ccceeEEecccccccc
Confidence 11100000000 000012358999999999999999987410 000000 000010 1247999988876654
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.|. +.+.....+.|. ++||++++++.+.++.
T Consensus 269 ~~~----------------------------------~~~~~~~~~~L~-------------~~GV~v~~~~~v~~v~-- 299 (502)
T 4g6h_A 269 MFE----------------------------------KKLSSYAQSHLE-------------NTSIKVHLRTAVAKVE-- 299 (502)
T ss_dssp TSC----------------------------------HHHHHHHHHHHH-------------HTTCEEETTEEEEEEC--
T ss_pred CCC----------------------------------HHHHHHHHHHHH-------------hcceeeecCceEEEEe--
Confidence 333 122223334443 6799999999999996
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. ++ +.+... . .+| ....++|++|+||||+|.+|+++.. .+....+...+.+|+|.||+++ +.
T Consensus 300 ~--~~----~~~~~~-~---~dg------~~~~~~i~ad~viwa~Gv~~~~~~~-~l~~~~~~~~~~~g~I~Vd~~l-q~ 361 (502)
T 4g6h_A 300 E--KQ----LLAKTK-H---EDG------KITEETIPYGTLIWATGNKARPVIT-DLFKKIPEQNSSKRGLAVNDFL-QV 361 (502)
T ss_dssp S--SE----EEEEEE-C---TTS------CEEEEEEECSEEEECCCEECCHHHH-HHHHHSGGGTTCCSSEEBCTTS-BB
T ss_pred C--Cc----eEEEEE-e---cCc------ccceeeeccCEEEEccCCcCCHHHH-hHHHhccccccCCCceeECCcc-cc
Confidence 2 32 222211 0 011 1123589999999999999986210 1223345666778999999985 44
Q ss_pred cccCceeeeccCCCC--CcchhHhhHHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRG--PTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 378 t~~p~vya~Gd~~~g--~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+++|+|||+|||+.. |.... .|++||..+|.||.+.
T Consensus 362 ~~~~~IfAiGD~a~~~~p~~a~-~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 362 KGSNNIFAIGDNAFAGLPPTAQ-VAHQEAEYLAKNFDKM 399 (502)
T ss_dssp TTCSSEEECGGGEESSSCCCHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcccCCCCCCchH-HHHHHHHHHHHHHHHH
Confidence 589999999999853 22333 6999999999999763
No 24
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=99.97 E-value=2.5e-31 Score=259.41 Aligned_cols=279 Identities=14% Similarity=0.196 Sum_probs=187.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC-----CChHHHHHHHHHHHhc-CCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQFSRVVQH-ERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~-----~~~~~~~~~~~~~~~~-~~v~~~ 90 (483)
++.++|+||||||||++||.+|++.+ .+|+|||+.. ++|.+.... |++ ....++.....+.+.+ .++.+.
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g--~~v~lie~~~-~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRAR--KQIALFDNNT-NRNRVTQNS-HGFITRDGIKPEEFKEIGLNEVMKYPSVHYY 79 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSC-CGGGGSSCB-CCSTTCTTBCHHHHHHHHHHHHTTSTTEEEE
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC-CCCeeeeec-CCccCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999999 9999999875 444432211 222 2345555554444444 456666
Q ss_pred eCeEEce--------EEEecce-eeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 91 ~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
....+.. .+.+.++ ...||+||||||+ .|+.|++||.+ ..++++......+ .. .
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs-~p~~p~i~G~~~~~~~~v~~~~~~~~~------------~~-~ 145 (304)
T 4fk1_A 80 EKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM-QEEFPSIPNVREYYGKSLFSCPYCDGW------------EL-K 145 (304)
T ss_dssp ECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC-EEECCSCTTHHHHBTTTEESCHHHHSG------------GG-T
T ss_pred eeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC-ccccccccCccccccceeeeccccchh------------Hh-c
Confidence 6655421 2333333 3469999999999 68888999965 2344433222110 11 4
Q ss_pred CCeEEEEcCCch-HHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 159 TDTAVILGQGNV-ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 159 ~~~vvVIG~G~~-g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
+++++|||||.. ++|+|..+.+ ...+|+++.|...+. .
T Consensus 146 ~~~~~VIggG~~~~~e~a~~~~~---------------------~~~~v~i~~~~~~~~----~---------------- 184 (304)
T 4fk1_A 146 DQPLIIISENEDHTLHMTKLVYN---------------------WSTDLVIATNGNELS----Q---------------- 184 (304)
T ss_dssp TSCEEEECCSHHHHHHHHHHHTT---------------------TCSCEEEECSSCCCC----H----------------
T ss_pred CCceeeecCCCchhhhHHHHHHh---------------------CCceEEEEeccccch----h----------------
Confidence 677888888876 5677776654 446788887765321 0
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
.+.+.|. ++++.++.. .+..+. . +++++..+++.
T Consensus 185 ----------------------~~~~~l~-------------~~g~~~~~~-~v~~~~--~-~~~~~~~v~~~------- 218 (304)
T 4fk1_A 185 ----------------------TIMDELS-------------NKNIPVITE-SIRTLQ--G-EGGYLKKVEFH------- 218 (304)
T ss_dssp ----------------------HHHHHHH-------------TTTCCEECS-CEEEEE--S-GGGCCCEEEET-------
T ss_pred ----------------------hhhhhhh-------------ccceeEeee-eEEEee--c-CCCeeeeeecc-------
Confidence 0112222 556776654 355665 4 35566555442
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcch
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTGI 396 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~~ 396 (483)
+++++++|.+|+++|.+|++ .+....|+.++++|+|.+|++ ++|++|||||+|||+. ++..+
T Consensus 219 -----------~g~~i~~~~~vi~~g~~~~~----~~~~~~g~~~~~~G~I~vd~~--~~Ts~p~IyA~GDv~~~~~~~~ 281 (304)
T 4fk1_A 219 -----------SGLRIERAGGFIVPTFFRPN----QFIEQLGCELQSNGTFVIDDF--GRTSEKNIYLAGETTTQGPSSL 281 (304)
T ss_dssp -----------TSCEECCCEEEECCEEECSS----CHHHHTTCCCCTTSSSCSSTT--CBCSSTTEEECSHHHHTSCCCH
T ss_pred -----------ccceeeecceeeeeccccCC----hhhhhcCeEECCCCCEEECcC--CccCCCCEEEEeccCCCcchHH
Confidence 22478899888888777654 255677899999999999998 8899999999999985 45556
Q ss_pred hHhhHHHHHHHHHHHHHHHhcC
Q 011535 397 IATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+ +|+.+|+.+|.+|.++|.++
T Consensus 282 ~-~A~~~G~~AA~~i~~~L~~e 302 (304)
T 4fk1_A 282 I-IAASQGNKAAIAINSDITDE 302 (304)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHhhc
Confidence 5 89999999999999999754
No 25
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=99.97 E-value=9.2e-31 Score=274.14 Aligned_cols=291 Identities=17% Similarity=0.234 Sum_probs=204.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-cc------------------------CCCCC--
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GV------------------------APDHP-- 69 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~------------------------~p~~~-- 69 (483)
...++|+|||||+||+++|..|++.+ .+|+|||+++.+||...+ ++ .+...
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 118 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEK 118 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhh
Confidence 34589999999999999999999998 999999999877765321 11 11111
Q ss_pred --ChHHHHHHHH-------HHH-----hcCCeEEE-eCeEE---ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCC
Q 011535 70 --ETKIVINQFS-------RVV-----QHERCSFF-GNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131 (483)
Q Consensus 70 --~~~~~~~~~~-------~~~-----~~~~v~~~-~~~~v---~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~ 131 (483)
...++...+. ..+ ...+++++ .+... ...+.+......||+||+|||+ .+..+++||.+..
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~G~~~~ 197 (523)
T 1mo9_A 119 VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGA-GPGTLDVPGVNAK 197 (523)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCE-ECCCCCSTTTTSB
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcccC
Confidence 1334444332 444 66788887 44322 1234443334579999999998 5777889998777
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
+++++.++...+. .. .+++++|||+|.+|+|+|..|.+ .+ .+|+++.+
T Consensus 198 ~v~~~~~~~~~l~----------~~-~g~~vvViGgG~~g~E~A~~l~~--------------------~G-~~Vtlv~~ 245 (523)
T 1mo9_A 198 GVFDHATLVEELD----------YE-PGSTVVVVGGSKTAVEYGCFFNA--------------------TG-RRTVMLVR 245 (523)
T ss_dssp TEEEHHHHHHHCC----------SC-CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECS
T ss_pred cEeeHHHHHHHHH----------hc-CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEe
Confidence 7887766541111 01 34899999999999999999986 44 47999999
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
.+.+...+. +...+.+.+.+. +.||+++++..+
T Consensus 246 ~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~GV~i~~~~~V 278 (523)
T 1mo9_A 246 TEPLKLIKD----------------------------------NETRAYVLDRMK-------------EQGMEIISGSNV 278 (523)
T ss_dssp SCTTTTCCS----------------------------------HHHHHHHHHHHH-------------HTTCEEESSCEE
T ss_pred cCccccccc----------------------------------HHHHHHHHHHHH-------------hCCcEEEECCEE
Confidence 875432221 111222223332 679999999999
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCC-ccCCCCcccCCCCeeee
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP-FDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~-~~~~~g~~~~~~G~v~v 370 (483)
.++. .++++++.++.+.. .+|+ .+++||.||+|+|++|+. . +.+..|+.++++|+|.+
T Consensus 279 ~~i~--~~~~~~v~~~~v~~--------------~~G~-~~i~aD~Vv~A~G~~p~~----~~~l~~~gl~~~~~G~i~V 337 (523)
T 1mo9_A 279 TRIE--EDANGRVQAVVAMT--------------PNGE-MRIETDFVFLGLGEQPRS----AELAKILGLDLGPKGEVLV 337 (523)
T ss_dssp EEEE--ECTTSBEEEEEEEE--------------TTEE-EEEECSCEEECCCCEECC----HHHHHHHTCCBCTTSCBCC
T ss_pred EEEE--EcCCCceEEEEEEE--------------CCCc-EEEEcCEEEECcCCccCC----ccCHHHcCCccCCCCCEEE
Confidence 9997 31244443332221 1221 279999999999999986 3 44566888888999999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|++ ++|+.|+|||+|||+.++.... .|..||+.+|.+|..
T Consensus 338 d~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 338 NEY--LQTSVPNVYAVGDLIGGPMEMF-KARKSGCYAARNVMG 377 (523)
T ss_dssp CTT--SBCSSTTEEECGGGGCSSCSHH-HHHHHHHHHHHHHTT
T ss_pred CCC--CccCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 987 7899999999999987665554 799999999999974
No 26
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=99.97 E-value=1.2e-30 Score=252.90 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=196.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce--ecccCCC--CCChHHHHHHHHHHHhcC-CeEEEeCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--RSGVAPD--HPETKIVINQFSRVVQHE-RCSFFGNV 93 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~--~~g~~p~--~~~~~~~~~~~~~~~~~~-~v~~~~~~ 93 (483)
+++|+||||||||+++|..|++.+ ++|+|||+.+..+... .++. +. .....++..++.+.+.+. +++++.+.
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 78 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGERRNRFASHSHGF-LGQDGKAPGEIIAEARRQIERYPTIHWVEGR 78 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCCGGGGCSCCCSS-TTCTTCCHHHHHHHHHHHHTTCTTEEEEESC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhhcCC-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 368999999999999999999999 9999999876543322 1122 22 345567888888888776 78887665
Q ss_pred EEce-------EEEeccee-eccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 94 TLGS-------SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 94 ~v~~-------~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.... .+.+.++. ..||+||+|||+ .++.+++||.+. .+++++. +. .. ... .++++
T Consensus 79 v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~-~~~~~~~~g~~~~~~~~~~~~~-~~---~~--------~~~-~~~~v 144 (297)
T 3fbs_A 79 VTDAKGSFGEFIVEIDGGRRETAGRLILAMGV-TDELPEIAGLRERWGSAVFHCP-YC---HG--------YEL-DQGKI 144 (297)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEEEEECCCC-EEECCCCBTTGGGBTTTEESCH-HH---HT--------GGG-TTCEE
T ss_pred EEEEEEcCCeEEEEECCCCEEEcCEEEECCCC-CCCCCCCCCchhhcCCeeEEcc-cC---cc--------hhh-cCCEE
Confidence 4422 34444443 579999999999 577778888652 3333222 11 11 012 57899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ +|+++.|+... +..
T Consensus 145 ~vvG~G~~~~e~a~~l~~--------------------~g--~v~~v~~~~~~---~~~--------------------- 178 (297)
T 3fbs_A 145 GVIAASPMAIHHALMLPD--------------------WG--ETTFFTNGIVE---PDA--------------------- 178 (297)
T ss_dssp EEECCSTTHHHHHHHGGG--------------------TS--EEEEECTTTCC---CCH---------------------
T ss_pred EEEecCccHHHHHHHhhh--------------------cC--cEEEEECCCCC---CCH---------------------
Confidence 999999999999999986 44 89999887541 110
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.+.+.+. +.||+++. ..+.++. . ++ .+.+.
T Consensus 179 -----------------~~~~~l~-------------~~gv~i~~-~~v~~i~--~--~~---~v~~~------------ 208 (297)
T 3fbs_A 179 -----------------DQHALLA-------------ARGVRVET-TRIREIA--G--HA---DVVLA------------ 208 (297)
T ss_dssp -----------------HHHHHHH-------------HTTCEEEC-SCEEEEE--T--TE---EEEET------------
T ss_pred -----------------HHHHHHH-------------HCCcEEEc-ceeeeee--c--CC---eEEeC------------
Confidence 0112222 66899884 7788886 3 22 33332
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccC--CCC-eeeecCCCCCCcccCceeeeccCCCCCcchhHh
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN--IRG-RVLKNISGDSSQVENGLYVCGWLKRGPTGIIAT 399 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~--~~G-~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~ 399 (483)
++ +++++|.||+|+|++|+. +|.+..++..+ .+| ++.+|++ ++|+.|+|||+|||+..+.... .
T Consensus 209 ----~g--~~~~~D~vi~a~G~~p~~----~~~~~~g~~~~~~~~G~~i~vd~~--~~t~~~~vya~GD~~~~~~~~~-~ 275 (297)
T 3fbs_A 209 ----DG--RSIALAGLFTQPKLRITV----DWIEKLGCAVEEGPMGSTIVTDPM--KQTTARGIFACGDVARPAGSVA-L 275 (297)
T ss_dssp ----TS--CEEEESEEEECCEEECCC----SCHHHHTCCEEEETTEEEECCCTT--CBCSSTTEEECSGGGCTTCCHH-H
T ss_pred ----CC--CEEEEEEEEEccCcccCc----hhHHhcCCccccCCCCceEEeCCC--CccCCCCEEEEeecCCchHHHH-H
Confidence 22 379999999999999976 35555566655 357 8999987 7899999999999988777666 7
Q ss_pred hHHHHHHHHHHHHHHHhcCc
Q 011535 400 NLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l~~~~ 419 (483)
|+.+|..+|.+|.++|.+..
T Consensus 276 A~~~g~~aa~~i~~~l~~~~ 295 (297)
T 3fbs_A 276 AVGDGAMAGAAAHRSILFPE 295 (297)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHhHHHHHHHHHHHHhhhh
Confidence 99999999999999998753
No 27
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=99.97 E-value=3.7e-31 Score=274.19 Aligned_cols=290 Identities=18% Similarity=0.196 Sum_probs=201.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCCC----------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH----------------------------P 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~~----------------------------~ 69 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +++.|.+ .
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLG--FKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL 83 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence 478999999999999999999998 99999999988877532 1111110 0
Q ss_pred ChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecc-e--eeccCEEEEccCCCCCCCCCCCCCCC
Q 011535 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSE-L--RQLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~-~--~~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
....+ ...+.+.++..+++++.+..+. ..+...+ . ...||+||+|||+ .|..++++|.+.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs-~p~~p~i~g~~~ 162 (474)
T 1zmd_A 84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGS-EVTPFPGITIDE 162 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCE-EECCCTTCCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCC-CCCCCCCCCCCc
Confidence 11111 1123455666789998887642 1233333 2 3579999999998 577778888765
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
.+++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 163 ~~v~t~~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~ 208 (474)
T 1zmd_A 163 DTIVSSTGALSL----------K---KVPEKMVVIGAGVIGVELGSVWQR--------------------LG-ADVTAVE 208 (474)
T ss_dssp SSEECHHHHTTC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEC
T ss_pred CcEEcHHHHhhc----------c---ccCceEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEe
Confidence 567766544310 0 135899999999999999999986 34 5899999
Q ss_pred ecCcccc-cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecC
Q 011535 211 RRGPVQA-ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 211 r~~~~~~-~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
|++.+.. .+. +...+.+.+.+. +.||+++++.
T Consensus 209 ~~~~~l~~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~ 241 (474)
T 1zmd_A 209 FLGHVGGVGID----------------------------------MEISKNFQRILQ-------------KQGFKFKLNT 241 (474)
T ss_dssp SSSSSSCSSCC----------------------------------HHHHHHHHHHHH-------------HTTCEEECSE
T ss_pred ccCccCCcccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCc
Confidence 9876532 222 111122223332 6789999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++....+++... .++++.++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.
T Consensus 242 ~v~~i~--~-~~~~~~~v~~~~~-------------~~~~~~~i~~D~vv~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~ 303 (474)
T 1zmd_A 242 KVTGAT--K-KSDGKIDVSIEAA-------------SGGKAEVITCDVLLVCIGRRPFTK-NL-GLEELGIELDPRGRIP 303 (474)
T ss_dssp EEEEEE--E-CTTSCEEEEEEET-------------TSCCCEEEEESEEEECSCEEECCT-TS-SHHHHTCCCCTTSCCC
T ss_pred eEEEEE--E-cCCceEEEEEEec-------------CCCCceEEEcCEEEECcCCCcCCC-cC-CchhcCCccCCCCCEE
Confidence 999997 3 2332123333210 123445899999999999999861 11 1345678888889999
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 304 vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 304 VNTR--FQTKIPNIYAIGDVVAGPMLAH-KAEDEGIICVEGMAG 344 (474)
T ss_dssp CCTT--CBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred ECcC--CccCCCCEEEeeecCCCCccHH-HHHHHHHHHHHHhcC
Confidence 9988 7799999999999987765555 799999999999975
No 28
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=99.97 E-value=4.1e-30 Score=268.87 Aligned_cols=288 Identities=16% Similarity=0.217 Sum_probs=207.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CCC--CCChHHHHHHHHHHHhcCCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p~--~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
...++|+||||||||+++|.+|++.+ .+|+|||+ .+||.+.. ++ .+. +....++...+.+.+.+.+++++
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G--~~v~lie~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~ 285 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKG--IRTGLMGE--RFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVI 285 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECS--STTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEE
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCC--CeEEEEEC--CCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 34689999999999999999999998 99999986 35555431 11 011 22455677788888888899999
Q ss_pred eCeEEc-----------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCC
Q 011535 91 GNVTLG-----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPD 155 (483)
Q Consensus 91 ~~~~v~-----------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~ 155 (483)
.++.+. ..+.+.++ ...||+||+|||+ .++.+++||.+. .+++... +.+ ..
T Consensus 286 ~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~-~~~~~~ipG~~~~~~~~v~~~~--------~~~-----~~ 351 (521)
T 1hyu_A 286 DSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA-KWRNMNVPGEDQYRTKGVTYCP--------HCD-----GP 351 (521)
T ss_dssp CSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTTTTTEECCT--------TCC-----GG
T ss_pred cCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC-CcCCCCCCChhhhcCceEEEee--------cCc-----hh
Confidence 885432 12444444 3569999999998 567778888641 2232111 100 01
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeE
Q 011535 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (483)
Q Consensus 156 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~ 235 (483)
...+++|+|||+|++|+|+|..|++ ...+|+++.|.+.+.. .
T Consensus 352 ~~~~k~V~ViGgG~~g~E~A~~L~~---------------------~g~~Vtlv~~~~~l~~--~--------------- 393 (521)
T 1hyu_A 352 LFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEMKA--D--------------- 393 (521)
T ss_dssp GGBTSEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEECSSSSCCS--C---------------
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEeCcccCc--C---------------
Confidence 1257899999999999999999985 2468999998865321 0
Q ss_pred EeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee
Q 011535 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~ 315 (483)
+.+.+.+. ...||+++++..+.++. + +++++.++.+.+.
T Consensus 394 -----------------------~~l~~~l~------------~~~gV~v~~~~~v~~i~--~-~~~~v~~v~~~~~--- 432 (521)
T 1hyu_A 394 -----------------------QVLQDKVR------------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR--- 432 (521)
T ss_dssp -----------------------HHHHHHHT------------TCTTEEEECSEEEEEEE--E-CSSSEEEEEEEET---
T ss_pred -----------------------HHHHHHHh------------cCCCcEEEeCCEEEEEE--c-CCCcEEEEEEEeC---
Confidence 00111221 02689999999999997 4 3567777776541
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG 395 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~ 395 (483)
.+|+..++++|.||+|+|++|++ +|... .+.++++|++.+|++ ++|+.|+|||+|||+..+..
T Consensus 433 ----------~~g~~~~i~~D~vi~a~G~~pn~----~~l~~-~l~~~~~G~I~Vd~~--~~ts~p~VfA~GD~~~~~~~ 495 (521)
T 1hyu_A 433 ----------VSGDIHSVALAGIFVQIGLLPNT----HWLEG-ALERNRMGEIIIDAK--CETSVKGVFAAGDCTTVPYK 495 (521)
T ss_dssp ----------TTCCEEEEECSEEEECCCEEESC----GGGTT-TSCBCTTSCBCCCTT--CBCSSTTEEECSTTBCCSSC
T ss_pred ----------CCCceEEEEcCEEEECcCCCCCc----hHHhh-hhccCCCCcEEeCCC--CCCCCCCEEEeecccCCCcc
Confidence 14555689999999999999986 34444 477788899999987 77999999999999886644
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 396 IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+..|+.+|..+|.+|..+|.+.
T Consensus 496 ~~~~A~~~g~~aa~~i~~~L~~~ 518 (521)
T 1hyu_A 496 QIIIATGEGAKASLSAFDYLIRT 518 (521)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHhHHHHHHHHHHHHHhh
Confidence 44479999999999999998764
No 29
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=1.2e-30 Score=269.00 Aligned_cols=283 Identities=15% Similarity=0.210 Sum_probs=196.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ec------------------------ccCCCC--CCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RS------------------------GVAPDH--PET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~------------------------g~~p~~--~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+. .+||.. .+ |+.... ...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 468999999999999999999998 999999998 555532 11 111000 011
Q ss_pred HH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCe
Q 011535 72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (483)
Q Consensus 72 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v 133 (483)
.. +...+.+.++..+++++.+..+. ..+...++ ...||+||+|||+ .+..++++|.+.. +
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs-~p~~~~~~g~~~~-v 157 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGS-RPIELPNFKFSNR-I 157 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCE-EECCBTTBCCCSS-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCC-CCCCCCCCCccce-E
Confidence 11 22234556677789998887642 12333333 3479999999998 5666777776533 5
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++..++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+
T Consensus 158 ~~~~~~~~----~------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~ 203 (455)
T 1ebd_A 158 LDSTGALN----L------G---EVPKSLVVIGGGYIGIELGTAYAN--------------------FG-TKVTILEGAG 203 (455)
T ss_dssp ECHHHHHT----C------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSS
T ss_pred ecHHHHhc----c------c---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCC
Confidence 54443321 0 0 136899999999999999999986 44 4899999987
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +...+.+.+.+. +.||+++++..+.+
T Consensus 204 ~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 204 EILSGFE----------------------------------KQMAAIIKKRLK-------------KKGVEVVTNALAKG 236 (455)
T ss_dssp SSSTTSC----------------------------------HHHHHHHHHHHH-------------HTTCEEEESEEEEE
T ss_pred ccccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEE
Confidence 5432221 111222223333 67899999999999
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc--cCCCCcccCCCCeeeec
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKGIVPNIRGRVLKN 371 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~--~~~~g~~~~~~G~v~v~ 371 (483)
+. . +++.+ .+++.. ++++.++++|.||+|+|++|+. ++ .+..|+.++++|++.+|
T Consensus 237 i~--~-~~~~~-~v~~~~---------------~g~~~~~~~D~vv~a~G~~p~~----~~l~~~~~g~~~~~~G~i~vd 293 (455)
T 1ebd_A 237 AE--E-REDGV-TVTYEA---------------NGETKTIDADYVLVTVGRRPNT----DELGLEQIGIKMTNRGLIEVD 293 (455)
T ss_dssp EE--E-ETTEE-EEEEEE---------------TTEEEEEEESEEEECSCEEESC----SSSSTTTTTCCBCTTSCBCCC
T ss_pred EE--E-eCCeE-EEEEEe---------------CCceeEEEcCEEEECcCCCccc----CcCChhhcCCccCCCCCEeeC
Confidence 97 3 23322 233321 2345689999999999999986 22 35678888888999999
Q ss_pred CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 372 ~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 294 ~~--~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 294 QQ--CRTSVPNIFAIGDIVPGPALAH-KASYEGKVAAEAIAG 332 (455)
T ss_dssp TT--CBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHTS
T ss_pred CC--cccCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 98 7799999999999987665554 799999999999974
No 30
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=99.97 E-value=8.7e-32 Score=273.65 Aligned_cols=288 Identities=18% Similarity=0.227 Sum_probs=197.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
++|+|||||+||++||..|++.+++.+|+|||+.+.++.. +...+..+......+ ....+++.+.+++++.++.+.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~v~ 81 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPEVT 81 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCEEE
Confidence 5899999999999999999999955669999999875321 111010111111111 122334456789999985442
Q ss_pred ------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 97 ------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 97 ------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
+.+.+.++ ...||+||||||+ .++.+++||.+.+++++.+.+.....-. ..+..+++++|||+|+
T Consensus 82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~ipG~~~~~v~~~~~~~d~~~l~-------~~~~~~~~vvViGgG~ 153 (410)
T 3ef6_A 82 ALDVQTRTISLDDGTTLSADAIVIATGS-RARTMALPGSQLPGVVTLRTYGDVQVLR-------DSWTSATRLLIVGGGL 153 (410)
T ss_dssp EEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTTTSTTEECCCSHHHHHHHH-------HHCCTTCEEEEECCSH
T ss_pred EEECCCCEEEECCCCEEECCEEEEccCC-cccCCCCCCccccceEEeccHHHHHHHH-------HHhccCCeEEEECCCH
Confidence 24555554 3579999999998 5888889998878887654432211100 0122578999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.+.+.+....
T Consensus 154 ~g~E~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~------------------------------ 182 (410)
T 3ef6_A 154 IGCEVATTARK--------------------LG-LSVTILEAGDELLVRV------------------------------ 182 (410)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEECSSSSSSHHH------------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CeEEEEecCCccchhh------------------------------
Confidence 99999999986 34 5799999887542100
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
..+...+.+.+.+. +.||+++++..+.++. . ++++..+++.+ |
T Consensus 183 ---~~~~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~--~~~~~~v~~~d----------------g- 225 (410)
T 3ef6_A 183 ---LGRRIGAWLRGLLT-------------ELGVQVELGTGVVGFS--G--EGQLEQVMASD----------------G- 225 (410)
T ss_dssp ---HCHHHHHHHHHHHH-------------HHTCEEECSCCEEEEE--C--SSSCCEEEETT----------------S-
T ss_pred ---cCHHHHHHHHHHHH-------------HCCCEEEeCCEEEEEe--c--cCcEEEEEECC----------------C-
Confidence 00112222223332 6799999999999997 4 44554554422 2
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc--------hhHhhH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG--------IIATNL 401 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~--------~~~~a~ 401 (483)
++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+.. .+..|+
T Consensus 226 -~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~ 296 (410)
T 3ef6_A 226 -RSFVADSALICVGAEPAD----QLARQAGLACD-RG-VIVDHC--GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQ 296 (410)
T ss_dssp -CEEECSEEEECSCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHH
T ss_pred -CEEEcCEEEEeeCCeecH----HHHHhCCCccC-Ce-EEEccC--eeECCCCEEEEEcceeccCCCCCeeeechHHHHH
Confidence 389999999999999986 45566788776 55 888887 78999999999999865431 134799
Q ss_pred HHHHHHHHHHHH
Q 011535 402 YCAEETVASISE 413 (483)
Q Consensus 402 ~~g~~~a~~I~~ 413 (483)
.||+.+|.+|+.
T Consensus 297 ~qg~~aa~~i~g 308 (410)
T 3ef6_A 297 RQAAAVAAAILG 308 (410)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999999975
No 31
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=99.97 E-value=1.1e-30 Score=270.32 Aligned_cols=288 Identities=17% Similarity=0.190 Sum_probs=199.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCCC----------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH----------------------------P 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~~----------------------------~ 69 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +++.|.. .
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLG--MKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 468999999999999999999998 99999999988877422 1211110 0
Q ss_pred ChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCCCC
Q 011535 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
....+ ...+.+.++..+++++.++.+. ..+...++ ...||+||+|||+ .+..++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~-~p~~p~~~g~~~ 158 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGS-EPTELPFLPFDE 158 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCBTTBCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCC-CcCCCCCCCCCc
Confidence 11111 1123445556689988876542 12333333 3479999999998 577777888766
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
++++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 159 ~~v~t~~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~ 204 (468)
T 2qae_A 159 KVVLSSTGALAL----------P---RVPKTMVVIGGGVIGLELGSVWAR--------------------LG-AEVTVVE 204 (468)
T ss_dssp SSEECHHHHHTC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEC
T ss_pred CceechHHHhhc----------c---cCCceEEEECCCHHHHHHHHHHHH--------------------hC-CEEEEEe
Confidence 667766554421 0 146899999999999999999986 34 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHH-HHHHHhcCCCCCCCcceEEEeecC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELL-SKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l-~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
|.+.+...+. +...+.+.+.+ . ++||+++++.
T Consensus 205 ~~~~~l~~~d----------------------------------~~~~~~l~~~l~~-------------~~gv~i~~~~ 237 (468)
T 2qae_A 205 FAPRCAPTLD----------------------------------EDVTNALVGALAK-------------NEKMKFMTST 237 (468)
T ss_dssp SSSSSSTTSC----------------------------------HHHHHHHHHHHHH-------------HTCCEEECSC
T ss_pred cCCcccccCC----------------------------------HHHHHHHHHHHhh-------------cCCcEEEeCC
Confidence 9876532221 11122222333 2 6799999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++.+ .+.+.. .+|+.+++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.
T Consensus 238 ~v~~i~--~-~~~~~-~v~~~~--------------~~g~~~~i~~D~vv~a~G~~p~~~-~l-~l~~~gl~~~~~G~i~ 297 (468)
T 2qae_A 238 KVVGGT--N-NGDSV-SLEVEG--------------KNGKRETVTCEALLVSVGRRPFTG-GL-GLDKINVAKNERGFVK 297 (468)
T ss_dssp EEEEEE--E-CSSSE-EEEEEC--------------C---EEEEEESEEEECSCEEECCT-TS-CHHHHTCCBCTTSCBC
T ss_pred EEEEEE--E-cCCeE-EEEEEc--------------CCCceEEEECCEEEECCCcccCCC-CC-CchhcCCccCCCCCEe
Confidence 999997 3 22322 233321 023335899999999999999861 11 1345678888889999
Q ss_pred ecCCCCCCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++ ++|+.|+|||+|||+. .+.... .|+.||+.+|.+|..
T Consensus 298 vd~~--~~t~~~~IyA~GD~~~~~~~~~~-~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 298 IGDH--FETSIPDVYAIGDVVDKGPMLAH-KAEDEGVACAEILAG 339 (468)
T ss_dssp CCTT--SBCSSTTEEECGGGBSSSCSCHH-HHHHHHHHHHHHHTT
T ss_pred ECCC--cccCCCCEEEeeccCCCCCccHh-HHHHHHHHHHHHHcC
Confidence 9988 7799999999999987 666555 799999999999974
No 32
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.9e-31 Score=271.37 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCCChHHHHHHHHHHH-hcCCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHPETKIVINQFSRVV-QHERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 94 (483)
+++|+|||||+||+++|..|++.+++.+|+|||+.+.+++.. +++ .++.....++.....+.+ +..+++++.++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 81 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP-CGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAE 81 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------CTHHHHTTCEEETTCE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC-cCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCE
Confidence 579999999999999999999996669999999998754321 111 122222333333333333 567899999865
Q ss_pred Ec------eEEEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 95 LG------SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 95 v~------~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
+. ..+...+. ...||+||||||+ .++.+++||.+.+++++........... ...... .+++++|||
T Consensus 82 v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~~~----~~~~~~-~~~~vvViG 155 (449)
T 3kd9_A 82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGA-SPQVPAIEGVNLKGVFTADLPPDALAIR----EYMEKY-KVENVVIIG 155 (449)
T ss_dssp EEEECSSEEEEECSSSEEEEECSEEEECCCE-EECCCSCBTTTSTTEECSCSTHHHHHHH----HHHSSS-CCCEEEEEC
T ss_pred EEEEecCCCEEEECCceEEEEcCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHHHH----HHHHhc-CCCeEEEEC
Confidence 52 23444443 3469999999998 6777889998877777654332111100 000011 568999999
Q ss_pred CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc-CCHHHHHHHhcCCCeeEEeccccccCC
Q 011535 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-CTAKELREILGIKNLYVHIREDDLIKS 245 (483)
Q Consensus 167 ~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~-f~~~el~~~~~~~~~~~~~~~~~~~~~ 245 (483)
+|++|+|+|..|.+ .+ .+|+++.|++.+... +. ++
T Consensus 156 gG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~-~~---------------------- 191 (449)
T 3kd9_A 156 GGYIGIEMAEAFAA--------------------QG-KNVTMIVRGERVLRRSFD-KE---------------------- 191 (449)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSC-HH----------------------
T ss_pred CCHHHHHHHHHHHh--------------------CC-CeEEEEEcCCccchhhcC-HH----------------------
Confidence 99999999999986 34 589999998765433 22 11
Q ss_pred CCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeec
Q 011535 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (483)
Q Consensus 246 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~ 325 (483)
.. +.+.+... +. |+++++..+.++. . ++.+..+..
T Consensus 192 -----------~~----~~l~~~l~---------~~-v~i~~~~~v~~i~--~--~~~v~~v~~---------------- 226 (449)
T 3kd9_A 192 -----------VT----DILEEKLK---------KH-VNLRLQEITMKIE--G--EERVEKVVT---------------- 226 (449)
T ss_dssp -----------HH----HHHHHHHT---------TT-SEEEESCCEEEEE--C--SSSCCEEEE----------------
T ss_pred -----------HH----HHHHHHHH---------hC-cEEEeCCeEEEEe--c--cCcEEEEEe----------------
Confidence 11 22222221 45 9999999999987 4 334432211
Q ss_pred cCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC------CC---cch
Q 011535 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------GP---TGI 396 (483)
Q Consensus 326 ~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~------g~---~~~ 396 (483)
++ .+++||.||+|+|++|+. ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+. |. ...
T Consensus 227 -~g--~~i~~D~Vv~a~G~~p~~----~l~~~~gl~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l 297 (449)
T 3kd9_A 227 -DA--GEYKAELVILATGIKPNI----ELAKQLGVRIGETGAIWTNEK--MQTSVENVYAAGDVAETRHVITGRRVWVPL 297 (449)
T ss_dssp -TT--EEEECSEEEECSCEEECC----HHHHHTTCCBCTTSSBCCCTT--CBCSSTTEEECSTTBCEEBTTTCSEECCCC
T ss_pred -CC--CEEECCEEEEeeCCccCH----HHHHhCCccCCCCCCEEECCC--CccCCCCEEEeeeeeeeccccCCceEEecc
Confidence 12 479999999999999986 355667888999999999987 7899999999999974 21 123
Q ss_pred hHhhHHHHHHHHHHHHH
Q 011535 397 IATNLYCAEETVASISE 413 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~ 413 (483)
...|..||+.+|.+|+.
T Consensus 298 ~~~A~~~g~~aa~~i~g 314 (449)
T 3kd9_A 298 APAGNKMGYVAGSNIAG 314 (449)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34799999999999864
No 33
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=1.3e-30 Score=269.93 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=200.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCCC---------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH---------------------------P 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~~---------------------------~ 69 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +++.|.. .
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 82 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 4689999999999999999999998 99999999987776432 1211110 0
Q ss_pred ChHH-----------HHHHHHHHHhcCCeEEEeCeEEce-----EEEecce---eeccCEEEEccCCCCCCCCCCCCCCC
Q 011535 70 ETKI-----------VINQFSRVVQHERCSFFGNVTLGS-----SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~-----~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
.... +...+...++..+++++.+..+.. .+...++ ...||+||+|||+ .+..++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs-~p~~p~~~g~~~ 161 (470)
T 1dxl_A 83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGS-DVKSLPGVTIDE 161 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCE-EECCBTTBCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCc
Confidence 1111 111234455566899888876521 2222333 3479999999998 577777888765
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
+++++..++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 162 ~~v~~~~~~~~~----------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~ 207 (470)
T 1dxl_A 162 KKIVSSTGALAL----------S---EIPKKLVVIGAGYIGLEMGSVWGR--------------------IG-SEVTVVE 207 (470)
T ss_dssp SSEECHHHHTTC----------S---SCCSEEEESCCSHHHHHHHHHHHH--------------------HT-CEEEEEC
T ss_pred ccEEeHHHhhhh----------h---hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEE
Confidence 567665543310 0 146899999999999999999875 34 4799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 290 (483)
|++.+...+. +...+.+.+.+. +.||+++++..
T Consensus 208 ~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~ 240 (470)
T 1dxl_A 208 FASEIVPTMD----------------------------------AEIRKQFQRSLE-------------KQGMKFKLKTK 240 (470)
T ss_dssp SSSSSSTTSC----------------------------------HHHHHHHHHHHH-------------HSSCCEECSEE
T ss_pred cCCccccccc----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCCE
Confidence 9875432221 111222223333 67899999999
Q ss_pred cceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee
Q 011535 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 291 ~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v 370 (483)
+.++. . +++.+ .+.+... .+|+..++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.+
T Consensus 241 v~~i~--~-~~~~~-~v~~~~~-------------~~g~~~~~~~D~vv~a~G~~p~~~-~l-~~~~~gl~~~~~G~i~v 301 (470)
T 1dxl_A 241 VVGVD--T-SGDGV-KLTVEPS-------------AGGEQTIIEADVVLVSAGRTPFTS-GL-NLDKIGVETDKLGRILV 301 (470)
T ss_dssp EEEEE--C-SSSSE-EEEEEES-------------SSCCCEEEEESEEECCCCEEECCT-TS-CCTTTTCCBCSSSCBCC
T ss_pred EEEEE--E-cCCeE-EEEEEec-------------CCCcceEEECCEEEECCCCCcCCC-CC-CchhcCCccCCCCCEeE
Confidence 99997 3 22322 3333310 023345899999999999999861 11 14667888888899999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 302 d~~--~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 302 NER--FSTNVSGVYAIGDVIPGPMLAH-KAEEDGVACVEYLAG 341 (470)
T ss_dssp CTT--CBCSSTTEEECSTTSSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred CcC--CccCCCCEEEEeccCCCCccHH-HHHHHHHHHHHHHcC
Confidence 988 7799999999999987665454 799999999999974
No 34
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=99.97 E-value=2.9e-30 Score=268.63 Aligned_cols=288 Identities=22% Similarity=0.283 Sum_probs=194.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee--------------------------cccCCCCC--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--------------------------SGVAPDHP-- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~--------------------------~g~~p~~~-- 69 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +|+....+
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL 101 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence 3579999999999999999999999 99999999888887421 11111110
Q ss_pred ChHH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCCC-
Q 011535 70 ETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGED- 129 (483)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~- 129 (483)
.... +...+...+...+++++.+.... ..+...++ ...||+||||||+. + +.+||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~-p--~~ipg~~~ 178 (491)
T 3urh_A 102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSD-V--AGIPGVEV 178 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEE-C--CCBTTBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCC-C--CCCCCccc
Confidence 1111 11223444566788888776542 12333333 34699999999984 3 4566654
Q ss_pred ---CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 130 ---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 130 ---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
...++++.++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|
T Consensus 179 ~~~~~~~~~~~~~~~----~--------~-~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~V 224 (491)
T 3urh_A 179 AFDEKTIVSSTGALA----L--------E-KVPASMIVVGGGVIGLELGSVWAR--------------------LG-AKV 224 (491)
T ss_dssp CCCSSSEECHHHHTS----C--------S-SCCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEE
T ss_pred ccCCeeEEehhHhhh----h--------h-hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEE
Confidence 223444332221 0 1 146899999999999999999985 33 489
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.+.+.+...+. +...+.+.+.+. +.||+++
T Consensus 225 tlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~v~ 257 (491)
T 3urh_A 225 TVVEFLDTILGGMD----------------------------------GEVAKQLQRMLT-------------KQGIDFK 257 (491)
T ss_dssp EEECSSSSSSSSSC----------------------------------HHHHHHHHHHHH-------------HTTCEEE
T ss_pred EEEeccccccccCC----------------------------------HHHHHHHHHHHH-------------hCCCEEE
Confidence 99998876543222 111222223332 6789999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G 366 (483)
++..+.++. . +++. ..+.+.+. .+|+.+++++|.||+|+|++|+.. .+. .+..|+.++++|
T Consensus 258 ~~~~v~~i~--~-~~~~-~~v~~~~~-------------~~g~~~~i~~D~Vi~a~G~~p~~~-~l~-l~~~g~~~~~~G 318 (491)
T 3urh_A 258 LGAKVTGAV--K-SGDG-AKVTFEPV-------------KGGEATTLDAEVVLIATGRKPSTD-GLG-LAKAGVVLDSRG 318 (491)
T ss_dssp CSEEEEEEE--E-ETTE-EEEEEEET-------------TSCCCEEEEESEEEECCCCEECCT-TSC-HHHHTCCBCTTS
T ss_pred ECCeEEEEE--E-eCCE-EEEEEEec-------------CCCceEEEEcCEEEEeeCCccCCC-ccC-chhcCceECCCC
Confidence 999999987 3 2332 23444320 124446899999999999999761 111 345578888899
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++.+|++ ++|+.|+|||+|||+.+|.... .|..+|+.+|.+|+.
T Consensus 319 ~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 319 RVEIDRH--FQTSIAGVYAIGDVVRGPMLAH-KAEDEGVAVAEIIAG 362 (491)
T ss_dssp CBCCCTT--CBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred CEeECCC--CCCCCCCEEEEEecCCCccchh-HHHHHHHHHHHHHcC
Confidence 9999987 7899999999999987776665 799999999999975
No 35
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=99.97 E-value=1.4e-29 Score=262.54 Aligned_cols=288 Identities=15% Similarity=0.217 Sum_probs=198.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc-------cCC------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-------VAP------------------------ 66 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g-------~~p------------------------ 66 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.++|...+| +.|
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCC--CEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3579999999999999999999999 9999999997433322111 111
Q ss_pred -CC--CChHH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCC
Q 011535 67 -DH--PETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 67 -~~--~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ 124 (483)
.. ..... +...+...++..+++++.+.... ..+...++ ...||+||||||+ .|..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~~~~ 158 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGS-KPVEIP 158 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCE-EECCCT
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCC-CCCCCC
Confidence 00 01111 11123344556688988886542 23333333 3469999999998 455555
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
.++.+...++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 159 ~~~~~~~~v~~~~~~~~~------------~-~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~ 204 (476)
T 3lad_A 159 PAPVDQDVIVDSTGALDF------------Q-NVPGKLGVIGAGVIGLELGSVWAR--------------------LG-A 204 (476)
T ss_dssp TSCCCSSSEEEHHHHTSC------------S-SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-C
T ss_pred CCCCCcccEEechhhhcc------------c-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 555555667776554321 0 146899999999999999999986 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+|+++.|.+.+...+. +.....+.+.+. +.||+
T Consensus 205 ~Vtlv~~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~ 237 (476)
T 3lad_A 205 EVTVLEAMDKFLPAVD----------------------------------EQVAKEAQKILT-------------KQGLK 237 (476)
T ss_dssp EEEEEESSSSSSTTSC----------------------------------HHHHHHHHHHHH-------------HTTEE
T ss_pred cEEEEecCCCcCcccC----------------------------------HHHHHHHHHHHH-------------hCCCE
Confidence 7999999876533222 111222223333 67999
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. . +++.+ .+.+.+ ..+ .+++++|.||+|+|++|+.- .+ ..+..|+.+++
T Consensus 238 v~~~~~v~~i~--~-~~~~~-~v~~~~--------------~~g-~~~~~~D~vi~a~G~~p~~~-~l-~~~~~g~~~~~ 296 (476)
T 3lad_A 238 ILLGARVTGTE--V-KNKQV-TVKFVD--------------AEG-EKSQAFDKLIVAVGRRPVTT-DL-LAADSGVTLDE 296 (476)
T ss_dssp EEETCEEEEEE--E-CSSCE-EEEEES--------------SSE-EEEEEESEEEECSCEEECCT-TC-CSSCCSCCBCT
T ss_pred EEECCEEEEEE--E-cCCEE-EEEEEe--------------CCC-cEEEECCEEEEeeCCcccCC-CC-CccccCccccC
Confidence 99999999997 3 23333 243332 012 35899999999999999762 11 24667888999
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++.+|++ ++|+.|+|||+|||+.+|.... .|..+|+.+|.+|..
T Consensus 297 ~G~i~vd~~--~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 342 (476)
T 3lad_A 297 RGFIYVDDY--CATSVPGVYAIGDVVRGAMLAH-KASEEGVVVAERIAG 342 (476)
T ss_dssp TSCBCCCTT--SBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred CCCEeeCCC--cccCCCCEEEEEccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 999999988 7799999999999987777665 799999999999975
No 36
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=99.97 E-value=1.4e-31 Score=271.65 Aligned_cols=291 Identities=16% Similarity=0.171 Sum_probs=198.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+++|+|||||+||++||..|++.+++.+|+|||+++.+... +...+..+.....++.....+++...+++++.....
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~ 80 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMV 80 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEE
Confidence 36899999999999999999999955599999998854211 111111222122222223344555678998873333
Q ss_pred c-----eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 96 G-----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 96 ~-----~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
. +.+.+.++ ...||+||+|||+ .++.+++||.+.++++..+.+....... ..+..+++++|||+|+
T Consensus 81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~i~g~~~~~v~~~~~~~d~~~l~-------~~~~~~~~vvViGgG~ 152 (404)
T 3fg2_P 81 SIDREGRKLLLASGTAIEYGHLVLATGA-RNRMLDVPNASLPDVLYLRTLDESEVLR-------QRMPDKKHVVVIGAGF 152 (404)
T ss_dssp EEETTTTEEEESSSCEEECSEEEECCCE-EECCCCSTTTTSTTEECCSSHHHHHHHH-------HHGGGCSEEEEECCSH
T ss_pred EEECCCCEEEECCCCEEECCEEEEeeCC-CccCCCCCCCCCCcEEEECCHHHHHHHH-------HHhhcCCeEEEECCCH
Confidence 2 23555554 3479999999998 6788889998878887544322111000 0011468999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.+.+.........
T Consensus 153 ~g~e~A~~l~~--------------------~g-~~Vtvv~~~~~~~~~~~~~--------------------------- 184 (404)
T 3fg2_P 153 IGLEFAATARA--------------------KG-LEVDVVELAPRVMARVVTP--------------------------- 184 (404)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCH---------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CEEEEEeCCCcchhhccCH---------------------------
Confidence 99999999985 33 5899999887543211111
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
.....+.+.+. +.||+++++..+.++. . +++++..+++.+ |
T Consensus 185 ------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~~V~~~d----------------G- 225 (404)
T 3fg2_P 185 ------EISSYFHDRHS-------------GAGIRMHYGVRATEIA--A-EGDRVTGVVLSD----------------G- 225 (404)
T ss_dssp ------HHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E-ETTEEEEEEETT----------------S-
T ss_pred ------HHHHHHHHHHH-------------hCCcEEEECCEEEEEE--e-cCCcEEEEEeCC----------------C-
Confidence 11122223332 6799999999999997 4 356665555432 2
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc---------hhHhh
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG---------IIATN 400 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~---------~~~~a 400 (483)
++++||+||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+.. .+..|
T Consensus 226 -~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~G-i~vd~~--~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A 296 (404)
T 3fg2_P 226 -NTLPCDLVVVGVGVIPNV----EIAAAAGLPTA-AG-IIVDQQ--LLTSDPHISAIGDCALFESVRFGETMRVESVQNA 296 (404)
T ss_dssp -CEEECSEEEECCCEEECC----HHHHHTTCCBS-SS-EEECTT--SBCSSTTEEECGGGEEEEETTTTEEECCCSHHHH
T ss_pred -CEEEcCEEEECcCCccCH----HHHHhCCCCCC-CC-EEECCC--cccCCCCEEEeecceeecCccCCceeeehHHHHH
Confidence 389999999999999986 35566777776 56 888887 77999999999999865431 13479
Q ss_pred HHHHHHHHHHHHH
Q 011535 401 LYCAEETVASISE 413 (483)
Q Consensus 401 ~~~g~~~a~~I~~ 413 (483)
..||+.+|.+|+.
T Consensus 297 ~~qg~~aa~~i~g 309 (404)
T 3fg2_P 297 TDQARCVAARLTG 309 (404)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999874
No 37
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=3.8e-30 Score=255.85 Aligned_cols=306 Identities=14% Similarity=0.134 Sum_probs=191.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-------------CC---------CCCChHHHHH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------AP---------DHPETKIVIN 76 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------------~p---------~~~~~~~~~~ 76 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+.+.+||.+.+.. .+ .++...++..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence 368999999999999999999998 99999999998887654310 01 1223367788
Q ss_pred HHHHHHhcCCeEEEeCeEEce--------E-EEecceeeccCEEEEccCCC-CCCCCCCCCCCC-C-Ceeecceeeeeec
Q 011535 77 QFSRVVQHERCSFFGNVTLGS--------S-VSLSELRQLYHVVVLAYGAE-SDRALGIPGEDL-I-GVHSAREFVWWYN 144 (483)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~v~~--------~-~~~~~~~~~yd~vvlAtG~~-~~~~~~ipg~~~-~-~v~~a~~~~~~~~ 144 (483)
++.+.+++.+++++.++.+.. . +++.++...||+||+|||.. .+..+.+||.+. . .+++...+..
T Consensus 81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 157 (357)
T 4a9w_A 81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST--- 157 (357)
T ss_dssp HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC---
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC---
Confidence 888888888999988865521 2 45555556799999999972 455677888642 1 1222222211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc-cc-CCHH
Q 011535 145 GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-AA-CTAK 222 (483)
Q Consensus 145 ~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~-~~-f~~~ 222 (483)
.... .+++|+|||+|++|+|+|..|.+ .+ +|+++.|+.+.. .. +...
T Consensus 158 --------~~~~-~~~~v~VvG~G~~g~e~a~~l~~--------------------~~--~v~~v~~~~~~~~~~~~~~~ 206 (357)
T 4a9w_A 158 --------PAPF-AGMRVAIIGGGNSGAQILAEVST--------------------VA--ETTWITQHEPAFLADDVDGR 206 (357)
T ss_dssp --------SGGG-TTSEEEEECCSHHHHHHHHHHTT--------------------TS--EEEEECSSCCCBCCTTCCTH
T ss_pred --------hhhc-CCCEEEEECCCcCHHHHHHHHHh--------------------hC--CEEEEECCCCeecchhhcCc
Confidence 0112 57899999999999999999986 33 599999985322 11 1111
Q ss_pred HHHHHhc-----CCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 223 ELREILG-----IKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 223 el~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+.+... .....+. +..............+.+.+ +.++ +.....+.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--------------~~g~-i~~~~~v~~~~-- 260 (357)
T 4a9w_A 207 VLFERATERWKAQQEGREP---------DLPPGGFGDIVMVPPVLDAR--------------ARGV-LAAVPPPARFS-- 260 (357)
T ss_dssp HHHTC-------------------------------CBCCCHHHHHHH--------------HTTC-CCEECCCSEEE--
T ss_pred cHHHHHHHHHhccccccCC---------CcccccccCcccChhHHHHH--------------hcCc-eEEecCcceEe--
Confidence 1111000 0000000 00000000000000000111 1121 22233333443
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC-CCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS-GDS 376 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~-~~~ 376 (483)
. + .+. ..++++++||+||+|+|++|+. +|.+..++. +++|++.+|++ + +
T Consensus 261 ~--~----~v~------------------~~~g~~i~~D~vi~a~G~~p~~----~~l~~~gl~-~~~G~i~vd~~~l-~ 310 (357)
T 4a9w_A 261 P--T----GMQ------------------WADGTERAFDAVIWCTGFRPAL----SHLKGLDLV-TPQGQVEVDGSGL-R 310 (357)
T ss_dssp T--T----EEE------------------CTTSCEEECSEEEECCCBCCCC----GGGTTTTCB-CTTSCBCBCTTSC-B
T ss_pred C--C----eeE------------------ECCCCEecCCEEEECCCcCCCC----cccCccccc-CCCCCccccCCcc-c
Confidence 1 1 111 1223489999999999999985 466777887 78899999987 5 7
Q ss_pred CcccCceeeec--cCCC-CCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 377 SQVENGLYVCG--WLKR-GPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 377 ~t~~p~vya~G--d~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
+|+.|+|||+| ||+. ++..+. .|+.+|+.+|.+|.++|.+
T Consensus 311 ~t~~~~vya~Gd~d~~~~~~~~~~-~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 311 ALAVPSVWLLGYGDWNGMASATLI-GVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BSSCTTEEECSSCGGGSTTCSSTT-THHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCeEEeccccccccchhhhh-hhHHHHHHHHHHHHHHHHh
Confidence 89999999999 6665 344555 7999999999999999976
No 38
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=99.97 E-value=9.1e-31 Score=270.52 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=194.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCC--------------------------CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPD--------------------------HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~--------------------------~~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+. .+||.. .+++.|. ....
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G--~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLG--LSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 368999999999999999999998 999999998 445432 1111110 0011
Q ss_pred HH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCCCCCC
Q 011535 72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLIG 132 (483)
Q Consensus 72 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~ 132 (483)
.. +...+.+.++..+++++.++.+. ..+...++ ...||+||+|||+ .++.++++|.+..
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~-~~~~~~~~g~~~~- 157 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGS-STRLVPGTSLSAN- 157 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCE-EECCCTTCCCBTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCce-
Confidence 11 11223455666789998877642 12333333 3579999999999 5666777775533
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
+++..++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.
T Consensus 158 ~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~ 203 (464)
T 2a8x_A 158 VVTYEEQIL----S------R---ELPKSIIIAGAGAIGMEFGYVLKN--------------------YG-VDVTIVEFL 203 (464)
T ss_dssp EECHHHHHT----C------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSS
T ss_pred EEecHHHhh----c------c---ccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEcC
Confidence 555444321 0 0 136899999999999999999986 34 489999998
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+. +...+.+.+.+. ++||+++++..+.
T Consensus 204 ~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~ 236 (464)
T 2a8x_A 204 PRALPNED----------------------------------ADVSKEIEKQFK-------------KLGVTILTATKVE 236 (464)
T ss_dssp SSSSTTSC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCEEE
T ss_pred CccccccC----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCcEEE
Confidence 76532222 111222223333 5689999999999
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . +++.+ .+.+.. +|+.+++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.+|+
T Consensus 237 ~i~--~-~~~~~-~v~~~~---------------~g~~~~~~~D~vv~a~G~~p~~~-~l-~~~~~gl~~~~~G~i~vd~ 295 (464)
T 2a8x_A 237 SIA--D-GGSQV-TVTVTK---------------DGVAQELKAEKVLQAIGFAPNVE-GY-GLDKAGVALTDRKAIGVDD 295 (464)
T ss_dssp EEE--E-CSSCE-EEEEES---------------SSCEEEEEESEEEECSCEEECCS-SS-CHHHHTCCBCTTSSBCCCT
T ss_pred EEE--E-cCCeE-EEEEEc---------------CCceEEEEcCEEEECCCCCccCC-CC-CchhcCCccCCCCCEeECc
Confidence 997 4 23322 233321 24445899999999999999861 11 1345678888889999999
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 296 ~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 296 Y--MRTNVGHIYAIGDVNGLLQLAH-VAEAQGVVAAETIAG 333 (464)
T ss_dssp T--SBCSSTTEEECGGGGCSSCSHH-HHHHHHHHHHHHHHT
T ss_pred C--CccCCCCEEEeECcCCCccCHH-HHHHHHHHHHHHhcC
Confidence 8 7799999999999987665554 799999999999974
No 39
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=270.50 Aligned_cols=284 Identities=14% Similarity=0.134 Sum_probs=194.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCC------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAP------------------------------ 66 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p------------------------------ 66 (483)
..++|+||||||||+++|..|++.+ .+|+|||+++ .||.+. .|+.|
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYG--AKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTS--CCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 3579999999999999999999998 9999999984 555321 11100
Q ss_pred --CCCChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCC-C
Q 011535 67 --DHPETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRAL-G 124 (483)
Q Consensus 67 --~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~-~ 124 (483)
.......+ ...+...++..+++++.+.... ..+...++ ...||+||||||+ .|..+ +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~~ 165 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGG-KAIFPEN 165 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCE-EECCCTT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCCCC
Confidence 00111111 1223445556789988876431 12333333 3569999999998 56666 7
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
+||.+ .++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 166 i~g~~--~~~~~~~~~~l----------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~ 209 (479)
T 2hqm_A 166 IPGFE--LGTDSDGFFRL----------E---EQPKKVVVVGAGYIGIELAGVFHG--------------------LG-S 209 (479)
T ss_dssp STTGG--GSBCHHHHHHC----------S---SCCSEEEEECSSHHHHHHHHHHHH--------------------TT-C
T ss_pred CCCcc--cccchHHHhcc----------c---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 88863 23444443321 0 146899999999999999999986 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+|+++.|.+.+...+. +...+.+.+.+. +.||+
T Consensus 210 ~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~Gv~ 242 (479)
T 2hqm_A 210 ETHLVIRGETVLRKFD----------------------------------ECIQNTITDHYV-------------KEGIN 242 (479)
T ss_dssp EEEEECSSSSSCTTSC----------------------------------HHHHHHHHHHHH-------------HHTCE
T ss_pred ceEEEEeCCccccccC----------------------------------HHHHHHHHHHHH-------------hCCeE
Confidence 8999999876532222 111222233333 56899
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. .++++.+..+++. +|+ +++++|.||+|+|++|+. .+. .+..|+.+++
T Consensus 243 i~~~~~v~~i~--~~~~~~~~~v~~~----------------~G~-~~i~~D~vv~a~G~~p~~--~l~-l~~~gl~~~~ 300 (479)
T 2hqm_A 243 VHKLSKIVKVE--KNVETDKLKIHMN----------------DSK-SIDDVDELIWTIGRKSHL--GMG-SENVGIKLNS 300 (479)
T ss_dssp EECSCCEEEEE--ECC-CCCEEEEET----------------TSC-EEEEESEEEECSCEEECC--CSS-GGGGTCCBCT
T ss_pred EEeCCEEEEEE--EcCCCcEEEEEEC----------------CCc-EEEEcCEEEECCCCCCcc--ccC-hhhcCceECC
Confidence 99999999997 3123322233321 232 489999999999999987 221 3567888888
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|+|.+|++ ++|+.|+|||+|||+..+.... .|+.||+.+|.+|+.
T Consensus 301 ~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 301 HDQIIADEY--QNTNVPNIYSLGDVVGKVELTP-VAIAAGRKLSNRLFG 346 (479)
T ss_dssp TSCBCCCTT--CBCSSTTEEECGGGTTSSCCHH-HHHHHHHHHHHHHHS
T ss_pred CCCEeECCC--CccCCCCEEEEEecCCCcccHH-HHHHHHHHHHHHhcC
Confidence 999999988 7899999999999976665444 799999999999974
No 40
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.8e-30 Score=266.93 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=199.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCC---------------------CCChHHHH-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD---------------------HPETKIVI- 75 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~---------------------~~~~~~~~- 75 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. .++.|. ......+.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G--~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAK--YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 369999999999999999999999 99999998888888643 222221 11111111
Q ss_pred -----------HHHHHHHhcCCeEEEeCeEEc-----eEEEecce-e--eccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 76 -----------NQFSRVVQHERCSFFGNVTLG-----SSVSLSEL-R--QLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 76 -----------~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~-~--~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
..+...++..+++++.+.... ..+...++ . ..||+||||||+ .|..+++||.+ +++++
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~--~~~t~ 158 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGA-ETAKLRLPGVE--YCLTS 158 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCCCCTTGG--GSBCH
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCC-CccCCCCCCcc--ceEeH
Confidence 334455667789998875442 12333333 3 579999999998 67888899876 56666
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++....... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 159 ~~~~~~~~~l------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l 208 (466)
T 3l8k_A 159 DDIFGYKTSF------R---KLPQDMVIIGAGYIGLEIASIFRL--------------------MG-VQTHIIEMLDRAL 208 (466)
T ss_dssp HHHHSTTCSC------C---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSC
T ss_pred HHHHHHHHHH------h---hCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEEeCCcCC
Confidence 6554211111 0 146899999999999999999986 34 5799999987654
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..+..+++ . +.+.+.. + |+++++..+.++.
T Consensus 209 ~~~~d~~~---------------------------------~----~~l~~~l----------~--v~i~~~~~v~~i~- 238 (466)
T 3l8k_A 209 ITLEDQDI---------------------------------V----NTLLSIL----------K--LNIKFNSPVTEVK- 238 (466)
T ss_dssp TTSCCHHH---------------------------------H----HHHHHHH----------C--CCEECSCCEEEEE-
T ss_pred CCCCCHHH---------------------------------H----HHHHhcC----------E--EEEEECCEEEEEE-
Confidence 33311111 1 2222211 2 8888888888887
Q ss_pred ccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 297 SNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 297 ~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. ++ +.+. +.+.. .+|+..++++|.||+|+|++|+.. + ..+..|+.++++| +.+|++
T Consensus 239 -~-~~~~~v~-v~~~~--------------~~G~~~~i~~D~vi~a~G~~p~~~--l-~l~~~gl~~~~~G-i~vd~~-- 295 (466)
T 3l8k_A 239 -K-IKDDEYE-VIYST--------------KDGSKKSIFTNSVVLAAGRRPVIP--E-GAREIGLSISKTG-IVVDET-- 295 (466)
T ss_dssp -E-EETTEEE-EEECC--------------TTSCCEEEEESCEEECCCEEECCC--T-TTGGGTCCBCSSS-BCCCTT--
T ss_pred -E-cCCCcEE-EEEEe--------------cCCceEEEEcCEEEECcCCCcccc--c-chhhcCceeCCCC-EeECCC--
Confidence 3 22 4332 33221 024445899999999999999872 2 1356788899899 999987
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.... .|+.||+.+|.+|+.
T Consensus 296 ~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 332 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGLAPYYH-AAVRMSIAAANNIMA 332 (466)
T ss_dssp CBCSSTTEEECGGGTCSCCSHH-HHHHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEEecCCCCccHh-HHHHHHHHHHHHHhC
Confidence 7899999999999987766655 799999999999975
No 41
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=99.97 E-value=1.3e-30 Score=270.43 Aligned_cols=290 Identities=17% Similarity=0.177 Sum_probs=196.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eec------------------------ccCCC--CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRS------------------------GVAPD--HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~------------------------g~~p~--~~~ 70 (483)
..++|+||||||||+++|..|++.+ .+|+|||++ .+||. +.. ++... ...
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELG--ARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 3589999999999999999999999 999999987 44543 221 11110 011
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecceeeccCEEEEccCCCCCCCC---CCCCCCCC
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSELRQLYHVVVLAYGAESDRAL---GIPGEDLI 131 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~~~~yd~vvlAtG~~~~~~~---~ipg~~~~ 131 (483)
... +...+...++..+++++.+.... ..+........||+||||||+ .|..+ ++||.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~-~p~~p~~~~i~G~~-- 172 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGG-MPSTPHESQIPGAS-- 172 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCE-EECCCCTTTSTTGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCC-CCCCCCcCCCCCCc--
Confidence 111 22233444566789988776542 124433334579999999998 56666 788865
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
.+.++.++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|
T Consensus 173 ~~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~ 218 (478)
T 3dk9_A 173 LGITSDGFFQ----L------E---ELPGRSVIVGAGYIAVEMAGILSA--------------------LG-SKTSLMIR 218 (478)
T ss_dssp GSBCHHHHTT----C------C---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECS
T ss_pred eeEchHHhhc----h------h---hcCccEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEe
Confidence 2233333221 0 0 136899999999999999999986 34 57999999
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
.+.+...+. +...+.+.+.+. ++||+++++..+
T Consensus 219 ~~~~l~~~d----------------------------------~~~~~~~~~~l~-------------~~gv~i~~~~~v 251 (478)
T 3dk9_A 219 HDKVLRSFD----------------------------------SMISTNCTEELE-------------NAGVEVLKFSQV 251 (478)
T ss_dssp SSSSCTTSC----------------------------------HHHHHHHHHHHH-------------HTTCEEETTEEE
T ss_pred CCccccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEE
Confidence 876543222 111222223333 679999999999
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc--eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE--FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~--~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.++. .++++....+.+.+. .+++ +.++++|.||+|+|++|+.. .+. .+..|+.++++|++.
T Consensus 252 ~~i~--~~~~~~~~~v~~~~~-------------~~g~~~g~~~~~D~vi~a~G~~p~~~-~l~-l~~~g~~~~~~G~i~ 314 (478)
T 3dk9_A 252 KEVK--KTLSGLEVSMVTAVP-------------GRLPVMTMIPDVDCLLWAIGRVPNTK-DLS-LNKLGIQTDDKGHII 314 (478)
T ss_dssp EEEE--ECSSSEEEEEEECCT-------------TSCCEEEEEEEESEEEECSCEEESCT-TSC-GGGGTCCBCTTCCBC
T ss_pred EEEE--EcCCCcEEEEEEccC-------------CCCcccceEEEcCEEEEeeccccCCC-CCC-chhcCCeeCCCCCEe
Confidence 9987 312331122333220 0122 26899999999999999862 111 356788888999999
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+|++ ++|+.|+|||+|||+.++.... .|+.+|+.+|.+|+..
T Consensus 315 vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 315 VDEF--QNTNVKGIYAVGDVCGKALLTP-VAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CCTT--CBCSSTTEEECGGGGCSSCCHH-HHHHHHHHHHHHHHSC
T ss_pred eCCC--cccCCCCEEEEEecCCCCccHh-HHHHHHHHHHHHHcCC
Confidence 9987 7899999999999987676665 7999999999999753
No 42
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=99.97 E-value=7.5e-30 Score=264.67 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=197.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------------------------ccCC-C--CC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--------------------------GVAP-D--HP 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--------------------------g~~p-~--~~ 69 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+.. |+.. . ..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 468999999999999999999998 999999998777764211 1100 0 00
Q ss_pred ChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---e------eccCEEEEccCCCCCCCCC
Q 011535 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---R------QLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~------~~yd~vvlAtG~~~~~~~~ 124 (483)
....+ ...+.+.++..+++++.++.+. ..+.+.++ . ..||+||+|||+. ++ .
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~-p~--~ 159 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSE-VT--P 159 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEE-EC--C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCC-CC--C
Confidence 11111 1123445566789998887652 12333332 3 6799999999984 42 3
Q ss_pred CCCCCCC--CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 125 IPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 125 ipg~~~~--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+||.+.. .++++.++.. +. ..+++++|||+|++|+|+|..|.+ .+
T Consensus 160 ~~g~~~~~~~v~~~~~~~~----------~~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g 206 (478)
T 1v59_A 160 FPGIEIDEEKIVSSTGALS----------LK---EIPKRLTIIGGGIIGLEMGSVYSR--------------------LG 206 (478)
T ss_dssp CTTCCCCSSSEECHHHHTT----------CS---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCCCCceEEcHHHHHh----------hh---ccCceEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 5555433 3444443321 00 136899999999999999999986 44
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|++.+...+. +.....+.+.+. +.|
T Consensus 207 -~~Vtlv~~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~g 238 (478)
T 1v59_A 207 -SKVTVVEFQPQIGASMD----------------------------------GEVAKATQKFLK-------------KQG 238 (478)
T ss_dssp -CEEEEECSSSSSSSSSC----------------------------------HHHHHHHHHHHH-------------HTT
T ss_pred -CEEEEEEeCCccccccC----------------------------------HHHHHHHHHHHH-------------HCC
Confidence 48999999876543222 111222223332 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~ 362 (483)
|++++++.+.++. .++++....+.+.+. .+++++++++|.||+|+|++|+. ..+ +.+..|+.+
T Consensus 239 v~i~~~~~v~~i~--~~~~~~~~~v~~~~~-------------~~g~~~~~~~D~vv~a~G~~p~~-~~l-~l~~~g~~~ 301 (478)
T 1v59_A 239 LDFKLSTKVISAK--RNDDKNVVEIVVEDT-------------KTNKQENLEAEVLLVAVGRRPYI-AGL-GAEKIGLEV 301 (478)
T ss_dssp CEEECSEEEEEEE--EETTTTEEEEEEEET-------------TTTEEEEEEESEEEECSCEEECC-TTS-CTTTTTCCB
T ss_pred CEEEeCCEEEEEE--EecCCCeEEEEEEEc-------------CCCCceEEECCEEEECCCCCcCC-CCC-CchhcCcee
Confidence 9999999999986 200333334444320 13445689999999999999986 111 456778888
Q ss_pred CCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 363 ~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 302 ~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 302 DKRGRLVIDDQ--FNSKFPHIKVVGDVTFGPMLAH-KAEEEGIAAVEMLKT 349 (478)
T ss_dssp CTTSCBCCCTT--SBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCEeECcC--CccCCCCEEEeeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 88999999988 7799999999999988766555 799999999999986
No 43
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=99.97 E-value=2.2e-30 Score=269.36 Aligned_cols=291 Identities=14% Similarity=0.186 Sum_probs=196.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC-CCCeEEEEecCCCCCCceeccc---CCCC-CChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGV---APDH-PETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~-~~~~v~lie~~~~~ggl~~~g~---~p~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
.++|+||||||||+++|..|++.+ ++.+|+|||+++.++.. ..++ .... ...+++.....+.+...+++++.+.
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~ 113 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFL-GAGMALWIGEQIAGPEGLFYSDKEELESLGAKVYMES 113 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBC-GGGHHHHHTTSSSCSGGGBSCCHHHHHHTTCEEETTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCcc-ccccchhhcCccCCHHHhhhcCHHHHHhCCCEEEeCC
Confidence 489999999999999999999986 67999999998764321 1110 0111 1122222222344556788887776
Q ss_pred EEc------eEEEec-c---eeeccCEEEEccCCCCCCCCCCCCCC-----------CCCeeecceeeeeecCCCCCCCC
Q 011535 94 TLG------SSVSLS-E---LRQLYHVVVLAYGAESDRALGIPGED-----------LIGVHSAREFVWWYNGHPDGKNL 152 (483)
Q Consensus 94 ~v~------~~~~~~-~---~~~~yd~vvlAtG~~~~~~~~ipg~~-----------~~~v~~a~~~~~~~~~~~~~~~~ 152 (483)
.+. ..+.+. + ....||+||||||+ .|..+++||.+ .+++++...+.....-. ..
T Consensus 114 ~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~----~~ 188 (490)
T 2bc0_A 114 PVQSIDYDAKTVTALVDGKNHVETYDKLIFATGS-QPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVI----AK 188 (490)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEECSEEEECCCE-EECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHH----HH
T ss_pred EEEEEECCCCEEEEEeCCcEEEEECCEEEECCCC-CcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHH----HH
Confidence 432 234443 2 23579999999998 57777899877 56777644322100000 00
Q ss_pred CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCC
Q 011535 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN 232 (483)
Q Consensus 153 ~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~ 232 (483)
..+ ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+......+
T Consensus 189 ~~~-~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~---------- 236 (490)
T 2bc0_A 189 LEN-KDIKRVAVVGAGYIGVELAEAFQR--------------------KG-KEVVLIDVVDTCLAGYYDR---------- 236 (490)
T ss_dssp TTS-TTCCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSCH----------
T ss_pred hhh-cCCceEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEEcccchhhhHHHH----------
Confidence 000 257899999999999999999986 34 5899999987653211111
Q ss_pred eeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeee
Q 011535 233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (483)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~ 312 (483)
.....+.+.+. +.||+++++..+.++. . ++.+..+.+
T Consensus 237 -----------------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~--~~~v~~v~~--- 273 (490)
T 2bc0_A 237 -----------------------DLTDLMAKNME-------------EHGIQLAFGETVKEVA--G--NGKVEKIIT--- 273 (490)
T ss_dssp -----------------------HHHHHHHHHHH-------------TTTCEEEETCCEEEEE--C--SSSCCEEEE---
T ss_pred -----------------------HHHHHHHHHHH-------------hCCeEEEeCCEEEEEE--c--CCcEEEEEE---
Confidence 11222223332 7799999999999997 3 444433332
Q ss_pred eeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC
Q 011535 313 ALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG 392 (483)
Q Consensus 313 ~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g 392 (483)
++ .+++||.||+|+|++|+. ++.+.. +.++++|+|.+|++ ++|+.|+|||+|||+..
T Consensus 274 --------------~g--~~i~~D~Vi~a~G~~p~~----~ll~~~-l~~~~~G~I~Vd~~--~~t~~~~IyA~GD~~~~ 330 (490)
T 2bc0_A 274 --------------DK--NEYDVDMVILAVGFRPNT----TLGNGK-IDLFRNGAFLVNKR--QETSIPGVYAIGDCATI 330 (490)
T ss_dssp --------------SS--CEEECSEEEECCCEEECC----GGGTTC-SCBCTTSCBCCCTT--CBCSSTTEEECGGGBCE
T ss_pred --------------CC--cEEECCEEEECCCCCcCh----HHHHhh-hccCCCCCEEECCC--cccCCCCEEEeeeeEEe
Confidence 12 379999999999999986 344555 77788899999998 78999999999999863
Q ss_pred Cc---------chhHhhHHHHHHHHHHHHH
Q 011535 393 PT---------GIIATNLYCAEETVASISE 413 (483)
Q Consensus 393 ~~---------~~~~~a~~~g~~~a~~I~~ 413 (483)
+. .....|..||+.+|.+|..
T Consensus 331 ~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 360 (490)
T 2bc0_A 331 YDNATRDTNYIALASNAVRTGIVAAHNACG 360 (490)
T ss_dssp EETTTTEEECCCCHHHHHHHHHHHHHHHTT
T ss_pred ccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence 21 2334799999999999964
No 44
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=99.97 E-value=2.7e-30 Score=268.65 Aligned_cols=284 Identities=18% Similarity=0.217 Sum_probs=194.7
Q ss_pred CCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEe--------cCCCCCCcee-cccCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLVR-SGVAPD--------------------- 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie--------~~~~~ggl~~-~g~~p~--------------------- 67 (483)
.++|+||||||||+++|..|++ .+ .+|+||| +...+||.+. .|+.|.
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~ 84 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYG--KRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGW 84 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred ccCEEEECCChhHHHHHHHHHHhcC--CeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCc
Confidence 4799999999999999999999 88 9999999 2445666432 222110
Q ss_pred -------CCChHHHHH-----------HHHHHHhcC-CeEEEeCeEEc---eEEEec---------ceeeccCEEEEccC
Q 011535 68 -------HPETKIVIN-----------QFSRVVQHE-RCSFFGNVTLG---SSVSLS---------ELRQLYHVVVLAYG 116 (483)
Q Consensus 68 -------~~~~~~~~~-----------~~~~~~~~~-~v~~~~~~~v~---~~~~~~---------~~~~~yd~vvlAtG 116 (483)
......+.. .+...++.. +++++.+.... ..+.+. .....||+||||||
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATG 164 (495)
T 2wpf_A 85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATG 164 (495)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCC
Confidence 111122221 223344566 89998886432 234443 22357999999999
Q ss_pred CCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHH
Q 011535 117 AESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196 (483)
Q Consensus 117 ~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~ 196 (483)
+ .|..|++||.+ .++++.++... . ..+++++|||+|.+|+|+|..|.+
T Consensus 165 s-~p~~p~i~G~~--~~~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~---------------- 212 (495)
T 2wpf_A 165 S-WPQMPAIPGIE--HCISSNEAFYL----------P---EPPRRVLTVGGGFISVEFAGIFNA---------------- 212 (495)
T ss_dssp E-EECCCCCTTGG--GCEEHHHHTTC----------S---SCCSEEEEECSSHHHHHHHHHHHH----------------
T ss_pred C-CcCCCCCCCcc--ccccHHHHHhh----------h---hcCCeEEEECCCHHHHHHHHHHHh----------------
Confidence 8 57777888863 34554443211 0 146899999999999999999875
Q ss_pred HHhcC--CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCC
Q 011535 197 ALEGS--SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASS 274 (483)
Q Consensus 197 ~l~~~--~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~ 274 (483)
. ...+|+++.|.+.+...|.. .....+.+.+.
T Consensus 213 ----~~~~g~~Vtlv~~~~~~l~~~d~----------------------------------~~~~~l~~~l~-------- 246 (495)
T 2wpf_A 213 ----YKPPGGKVTLCYRNNLILRGFDE----------------------------------TIREEVTKQLT-------- 246 (495)
T ss_dssp ----HCCTTCEEEEEESSSSSCTTSCH----------------------------------HHHHHHHHHHH--------
T ss_pred ----hCCCCCeEEEEEcCCccccccCH----------------------------------HHHHHHHHHHH--------
Confidence 2 13589999998765432221 11222223333
Q ss_pred CCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc
Q 011535 275 QPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354 (483)
Q Consensus 275 ~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~ 354 (483)
++||+++++..+.++. . +++....+++. +| ++++||.||+|+|++|+.- .+ .
T Consensus 247 -----~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~G--~~i~~D~vv~a~G~~p~~~-~L-~ 298 (495)
T 2wpf_A 247 -----ANGIEIMTNENPAKVS--L-NTDGSKHVTFE----------------SG--KTLDVDVVMMAIGRIPRTN-DL-Q 298 (495)
T ss_dssp -----HTTCEEEESCCEEEEE--E-CTTSCEEEEET----------------TS--CEEEESEEEECSCEEECCG-GG-T
T ss_pred -----hCCCEEEeCCEEEEEE--E-cCCceEEEEEC----------------CC--cEEEcCEEEECCCCccccc-cc-c
Confidence 6799999999999997 3 22222233321 23 3799999999999999861 11 1
Q ss_pred cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 355 ~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.++++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 299 l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 299 LGNVGVKLTPKGGVQVDEF--SRTNVPNIYAIGDITDRLMLTP-VAINEGAALVDTVFG 354 (495)
T ss_dssp GGGTTCCBCTTSSBCCCTT--CBCSSTTEEECGGGGCSCCCHH-HHHHHHHHHHHHHHS
T ss_pred hhhcCccCCCCCCEEECCC--CccCCCCEEEEeccCCCccCHH-HHHHHHHHHHHHhcC
Confidence 3567888888999999987 7899999999999987665444 799999999999974
No 45
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=99.97 E-value=9.8e-31 Score=271.90 Aligned_cols=287 Identities=15% Similarity=0.166 Sum_probs=191.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ec------------------------ccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RS------------------------GVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~------------------------g~~p~--~~~~ 71 (483)
.++|+||||||||++||..|++.+ .+|+|||+++ +||.. .. |+.+. ....
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G--~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHT--DKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTC--SCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence 479999999999999999999999 9999999976 55532 21 22111 0122
Q ss_pred HHHHHHHHH-----------HHhc-CCeEEEeCeEE---ceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 011535 72 KIVINQFSR-----------VVQH-ERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (483)
Q Consensus 72 ~~~~~~~~~-----------~~~~-~~v~~~~~~~v---~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~ 135 (483)
.++...+.+ .... .+++++.+... ...+.+.+. ...||+||||||+ .|..|++++.....+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs-~p~~p~~~~~~~~~v~t 163 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGS-RPNYPEFLAAAGSRLLT 163 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCE-ECCCCHHHHTTGGGEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCC-CCcCCCCCCccCCcEEc
Confidence 222222211 1111 12333333221 223455333 3579999999998 56666666554456666
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.++..+ . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+
T Consensus 164 ~~~~~~~------------~-~~~k~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~ 209 (492)
T 3ic9_A 164 NDNLFEL------------N-DLPKSVAVFGPGVIGLELGQALSR--------------------LG-VIVKVFGRSGSV 209 (492)
T ss_dssp HHHHTTC------------S-SCCSEEEEESSCHHHHHHHHHHHH--------------------TT-CEEEEECCTTCC
T ss_pred HHHHhhh------------h-hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEECCcc
Confidence 6554321 0 146899999999999999999986 34 579999998765
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...+.. ...+.+.+.|. +. |+++++..+.++.
T Consensus 210 l~~~d~----------------------------------~~~~~l~~~l~-------------~~-V~i~~~~~v~~i~ 241 (492)
T 3ic9_A 210 ANLQDE----------------------------------EMKRYAEKTFN-------------EE-FYFDAKARVISTI 241 (492)
T ss_dssp TTCCCH----------------------------------HHHHHHHHHHH-------------TT-SEEETTCEEEEEE
T ss_pred cccCCH----------------------------------HHHHHHHHHHh-------------hC-cEEEECCEEEEEE
Confidence 432221 11222223332 44 9999999999987
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec-CCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN-ISG 374 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~-~~~ 374 (483)
. +++.+. +.+.+ .+|+..++++|.||+|+|++|+.. .+. .+..|+.++++|++.+| ++
T Consensus 242 --~-~~~~v~-v~~~~--------------~~G~~~~i~~D~Vi~a~G~~p~~~-~l~-l~~~gl~~~~~G~i~vd~~~- 300 (492)
T 3ic9_A 242 --E-KEDAVE-VIYFD--------------KSGQKTTESFQYVLAATGRKANVD-KLG-LENTSIELDKKNSPLFDELT- 300 (492)
T ss_dssp --E-CSSSEE-EEEEC--------------TTCCEEEEEESEEEECSCCEESCS-SSC-GGGSCCCBCTTCCBCCCTTT-
T ss_pred --E-cCCEEE-EEEEe--------------CCCceEEEECCEEEEeeCCccCCC-CCC-hhhcCCEECCCCCEeECccc-
Confidence 4 234332 33321 134446899999999999999861 111 46678899999999999 66
Q ss_pred CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++|+.|+|||+|||+.++.... .|+.||+.+|.+|...
T Consensus 301 -~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~~ 338 (492)
T 3ic9_A 301 -LQTSVDHIFVAGDANNTLTLLH-EAADDGKVAGTNAGAY 338 (492)
T ss_dssp -CBCSSTTEEECGGGGTSSCSHH-HHHHHHHHHHHHHHHT
T ss_pred -ccCCCCCEEEEEecCCCCccHH-HHHHHHHHHHHHHcCC
Confidence 7899999999999987666555 7999999999999874
No 46
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=99.97 E-value=4.7e-30 Score=266.65 Aligned_cols=284 Identities=18% Similarity=0.252 Sum_probs=194.6
Q ss_pred CCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEe--------cCCCCCCce-ecccCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLV-RSGVAPD--------------------- 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie--------~~~~~ggl~-~~g~~p~--------------------- 67 (483)
.++|+||||||||+++|..|++ .+ .+|+||| +...+||.+ ..|+.|.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHK--KRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcC--CEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 5799999999999999999999 88 9999999 245566642 2222121
Q ss_pred -------CCChHHHH-----------HHHHHHHhcC-CeEEEeCeEEc---eEEEec-----ce----eeccCEEEEccC
Q 011535 68 -------HPETKIVI-----------NQFSRVVQHE-RCSFFGNVTLG---SSVSLS-----EL----RQLYHVVVLAYG 116 (483)
Q Consensus 68 -------~~~~~~~~-----------~~~~~~~~~~-~v~~~~~~~v~---~~~~~~-----~~----~~~yd~vvlAtG 116 (483)
......+. ..+...++.. +++++.+.... ..+.+. ++ ...||+||||||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtG 160 (490)
T 1fec_A 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG 160 (490)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence 11112221 2334455667 99998887542 134442 23 357999999999
Q ss_pred CCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHH
Q 011535 117 AESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196 (483)
Q Consensus 117 ~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~ 196 (483)
+ .|..+++||.+ .++++.++... . ..+++++|||+|++|+|+|..|.+
T Consensus 161 s-~p~~p~i~g~~--~~~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~---------------- 208 (490)
T 1fec_A 161 S-WPQHLGIEGDD--LCITSNEAFYL----------D---EAPKRALCVGGGYISIEFAGIFNA---------------- 208 (490)
T ss_dssp E-EECCCCSBTGG--GCBCHHHHTTC----------S---SCCSEEEEECSSHHHHHHHHHHHH----------------
T ss_pred C-CCCCCCCCCcc--ceecHHHHhhh----------h---hcCCeEEEECCCHHHHHHHHHHHh----------------
Confidence 8 57777788763 34444333210 0 146899999999999999999875
Q ss_pred HHhcC--CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCC
Q 011535 197 ALEGS--SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASS 274 (483)
Q Consensus 197 ~l~~~--~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~ 274 (483)
. ...+|+++.|.+.+...+. +...+.+.+.+.
T Consensus 209 ----~~~~g~~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------- 242 (490)
T 1fec_A 209 ----YKARGGQVDLAYRGDMILRGFD----------------------------------SELRKQLTEQLR-------- 242 (490)
T ss_dssp ----HSCTTCEEEEEESSSSSSTTSC----------------------------------HHHHHHHHHHHH--------
T ss_pred ----hccCcCeEEEEEcCCCcccccC----------------------------------HHHHHHHHHHHH--------
Confidence 2 1358999999876432222 111222223332
Q ss_pred CCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc
Q 011535 275 QPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354 (483)
Q Consensus 275 ~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~ 354 (483)
+.||+++++..+.++. . +++....+++. +| +++++|.||+|+|++|+.- .+ .
T Consensus 243 -----~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~G--~~i~~D~vv~a~G~~p~~~-~L-~ 294 (490)
T 1fec_A 243 -----ANGINVRTHENPAKVT--K-NADGTRHVVFE----------------SG--AEADYDVVMLAIGRVPRSQ-TL-Q 294 (490)
T ss_dssp -----HTTEEEEETCCEEEEE--E-CTTSCEEEEET----------------TS--CEEEESEEEECSCEEESCT-TS-C
T ss_pred -----hCCCEEEeCCEEEEEE--E-cCCCEEEEEEC----------------CC--cEEEcCEEEEccCCCcCcc-cc-C
Confidence 6799999999999997 3 22222223221 23 3799999999999999861 11 1
Q ss_pred cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 355 ~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.++++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 295 l~~~gl~~~~~G~I~Vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 295 LEKAGVEVAKNGAIKVDAY--SKTNVDNIYAIGDVTDRVMLTP-VAINEGAAFVDTVFA 350 (490)
T ss_dssp GGGGTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGCSCCCHH-HHHHHHHHHHHHHHS
T ss_pred chhcCccCCCCCCEEECCC--CccCCCCEEEEeccCCCccCHH-HHHHHHHHHHHHhcC
Confidence 3567888888999999987 7899999999999987665444 799999999999974
No 47
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=99.97 E-value=1.9e-29 Score=260.87 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=195.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-c-------------------------ccCCCCC--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-S-------------------------GVAPDHP-- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~-------------------------g~~p~~~-- 69 (483)
..++|+||||||||+++|..|++.+ .+|+|||++ .+||.+. . |+.+...
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQG--AQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence 3579999999999999999999998 999999998 4555321 1 2211111
Q ss_pred ChHHHH-------HH-----HHHHHhcC-CeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCC
Q 011535 70 ETKIVI-------NQ-----FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 70 ~~~~~~-------~~-----~~~~~~~~-~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
....+. .. +.+.++.. +++++.+.... ..+...++ ...||+||||||+ .|+.|++||.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~G~ 158 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGA-SPAVPPIPGL 158 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCE-EECCCCCTTT
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCC-CCCCCCCCCC
Confidence 122221 11 23445566 89988775431 12333333 3569999999998 6777889997
Q ss_pred CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEE
Q 011535 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (483)
Q Consensus 129 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~l 208 (483)
+..++++..++... . ..+++++|||+|++|+|+|..|.+ .+ .+|++
T Consensus 159 ~~~~~~~~~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtl 204 (467)
T 1zk7_A 159 KESPYWTSTEALAS----------D---TIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTV 204 (467)
T ss_dssp TTSCCBCHHHHHHC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEE
T ss_pred CcCceecHHHHhcc----------c---ccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 65556655544321 0 146899999999999999999986 34 47999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeec
Q 011535 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (483)
Q Consensus 209 i~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 288 (483)
+.|.+.+.. +. +...+.+.+.+. +.||+++++
T Consensus 205 v~~~~~~l~-~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~ 236 (467)
T 1zk7_A 205 LARNTLFFR-ED----------------------------------PAIGEAVTAAFR-------------AEGIEVLEH 236 (467)
T ss_dssp ECSSCTTTT-SC----------------------------------HHHHHHHHHHHH-------------HTTCEEETT
T ss_pred EEECCccCC-CC----------------------------------HHHHHHHHHHHH-------------hCCCEEEcC
Confidence 999875432 21 111222223332 678999999
Q ss_pred CCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCee
Q 011535 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (483)
Q Consensus 289 ~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v 368 (483)
..+.++. . ++....+.+ .+ .++++|.||+|+|++|+.- .+ ..+..|+.++++|++
T Consensus 237 ~~v~~i~--~--~~~~~~v~~-----------------~~--~~i~aD~Vv~a~G~~p~~~-~l-~l~~~gl~~~~~G~i 291 (467)
T 1zk7_A 237 TQASQVA--H--MDGEFVLTT-----------------TH--GELRADKLLVATGRTPNTR-SL-ALDAAGVTVNAQGAI 291 (467)
T ss_dssp CCEEEEE--E--ETTEEEEEE-----------------TT--EEEEESEEEECSCEEESCT-TS-CGGGGTCCBCTTSCB
T ss_pred CEEEEEE--E--eCCEEEEEE-----------------CC--cEEEcCEEEECCCCCcCCC-cC-CchhcCCcCCCCCCE
Confidence 9999987 3 222222221 11 3799999999999999761 11 235667888888999
Q ss_pred eecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 369 ~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+|++ ++|+.|+|||+|||+..+.... .|+.||+.+|.+|..
T Consensus 292 ~vd~~--~~t~~~~iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 292 VIDQG--MRTSNPNIYAAGDCTDQPQFVY-VAAAAGTRAAINMTG 333 (467)
T ss_dssp CCCTT--CBCSSTTEEECSTTBSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred EECCC--cccCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 99987 7899999999999988776665 799999999999864
No 48
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=99.97 E-value=1.4e-31 Score=269.30 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=189.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC--ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG--LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg--l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+|||||+||++||..|.+.+ .+|+|||+++.++. .......++....+++.....+++++.+++++.++.+
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V 85 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA 85 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence 4679999999999999999995544 99999999987531 1111111233333444444556666789999988655
Q ss_pred c------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCC
Q 011535 96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (483)
Q Consensus 96 ~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G 168 (483)
. +.+++.++. ..||+||||||+ .|+.+++||.+ ++++...+....... ..+..+++|+|||+|
T Consensus 86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~-~p~~p~i~G~~--~v~~~~~~~d~~~l~-------~~l~~~~~vvVIGgG 155 (385)
T 3klj_A 86 TSIDPNNKLVTLKSGEKIKYEKLIIASGS-IANKIKVPHAD--EIFSLYSYDDALKIK-------DECKNKGKAFIIGGG 155 (385)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTCS--CEECCSSHHHHHHHH-------HHHHHHSCEEEECCS
T ss_pred EEEECCCCEEEECCCCEEECCEEEEecCC-CcCCCCCCCCC--CeEEeCCHHHHHHHH-------HHhhcCCeEEEECCC
Confidence 2 245666553 479999999999 68888899987 666544332211000 001126899999999
Q ss_pred chHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc
Q 011535 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (483)
Q Consensus 169 ~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 248 (483)
++|+|+|..|.+ .+ .+|+++.|.+.+......+
T Consensus 156 ~~g~E~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~~~~-------------------------- 188 (385)
T 3klj_A 156 ILGIELAQAIID--------------------SG-TPASIGIILEYPLERQLDR-------------------------- 188 (385)
T ss_dssp HHHHHHHHHHHH--------------------HT-CCEEEECSSSSSCTTTSCH--------------------------
T ss_pred HHHHHHHHHHHh--------------------CC-CeEEEEEcCCccchhhcCH--------------------------
Confidence 999999999985 33 5799999987654321111
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCC
Q 011535 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (483)
Q Consensus 249 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g 328 (483)
...+.+.+.+. +.||+++++..+.++-
T Consensus 189 -------~~~~~~~~~l~-------------~~gV~~~~~~~v~~ig--------------------------------- 215 (385)
T 3klj_A 189 -------DGGLFLKDKLD-------------RLGIKIYTNSNFEEMG--------------------------------- 215 (385)
T ss_dssp -------HHHHHHHHHHH-------------TTTCEEECSCCGGGCH---------------------------------
T ss_pred -------HHHHHHHHHHH-------------hCCCEEEeCCEEEEcC---------------------------------
Confidence 11112223332 6788888766554431
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHHH
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAE 405 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g~ 405 (483)
++++||+||+|+|++|+. +|.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+ .+....|+.||+
T Consensus 216 --~~~~~D~vv~a~G~~p~~----~~~~~~gl~~~-~g-i~vd~~--~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~ 285 (385)
T 3klj_A 216 --DLIRSSCVITAVGVKPNL----DFIKDTEIASK-RG-ILVNDH--METSIKDIYACGDVAEFYGKNPGLINIANKQGE 285 (385)
T ss_dssp --HHHHHSEEEECCCEEECC----GGGTTSCCCBS-SS-EEECTT--CBCSSTTEEECGGGEEETTBCCCCHHHHHHHHH
T ss_pred --eEEecCeEEECcCcccCh----hhhhhcCCCcC-CC-EEECCC--cccCCCCEEEEEeeEecCCCcccHHHHHHHHHH
Confidence 268999999999999986 46677788775 56 888887 789999999999998622 234447999999
Q ss_pred HHHHHHHH
Q 011535 406 ETVASISE 413 (483)
Q Consensus 406 ~~a~~I~~ 413 (483)
.+|.+|+.
T Consensus 286 ~aa~~i~g 293 (385)
T 3klj_A 286 VAGLNACG 293 (385)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99999975
No 49
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=99.97 E-value=8e-30 Score=265.74 Aligned_cols=283 Identities=16% Similarity=0.110 Sum_probs=198.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCCCce-ec------------------------ccC--CC--C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLV-RS------------------------GVA--PD--H 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~ggl~-~~------------------------g~~--p~--~ 68 (483)
.++|+|||||+||+++|..|++..| +.+|+|||+.+ +||.. .+ |+. .+ .
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 3689999999999999999999922 39999999988 66532 11 220 00 0
Q ss_pred CChHHH-----------HHHHHHHHhcCCeEEEeCeEEc---------eE--EEecce---eeccCEEEEccCCCCCCCC
Q 011535 69 PETKIV-----------INQFSRVVQHERCSFFGNVTLG---------SS--VSLSEL---RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 69 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~---------~~--~~~~~~---~~~yd~vvlAtG~~~~~~~ 123 (483)
.....+ ...+.+.++..+++++.+.... .. +...++ ...||+||+|||+ .+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs-~p~~p 159 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA-SPRIL 159 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE-EECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCC
Confidence 112222 2234556667789998886531 22 222333 3579999999998 57777
Q ss_pred CCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc
Q 011535 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (483)
Q Consensus 124 ~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~ 203 (483)
+++|.+..++++..++... . ..+++++|||+|.+|+|+|..|.+ .+
T Consensus 160 ~i~g~~~~~v~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~g- 205 (499)
T 1xdi_A 160 PSAQPDGERILTWRQLYDL----------D---ALPDHLIVVGSGVTGAEFVDAYTE--------------------LG- 205 (499)
T ss_dssp GGGCCCSSSEEEGGGGGGC----------S---SCCSSEEEESCSHHHHHHHHHHHH--------------------TT-
T ss_pred CCCCCCcCcEEehhHhhhh----------h---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-
Confidence 8888876677766554321 0 135899999999999999999885 34
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceE
Q 011535 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (483)
Q Consensus 204 ~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i 283 (483)
.+|+++.+.+.+...+. +...+.+.+.+. +.||
T Consensus 206 ~~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~GV 238 (499)
T 1xdi_A 206 VPVTVVASQDHVLPYED----------------------------------ADAALVLEESFA-------------ERGV 238 (499)
T ss_dssp CCEEEECSSSSSSCCSS----------------------------------HHHHHHHHHHHH-------------HTTC
T ss_pred CeEEEEEcCCccccccC----------------------------------HHHHHHHHHHHH-------------HCCC
Confidence 47999998876532222 112222223333 6799
Q ss_pred EEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc--cCCCCcc
Q 011535 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKGIV 361 (483)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~--~~~~g~~ 361 (483)
+++++..+.++. . +++.+ .+++ ++++++++|.||+|+|++|+. ++ .+..|+.
T Consensus 239 ~i~~~~~V~~i~--~-~~~~v-~v~~------------------~~g~~i~aD~Vv~a~G~~p~~----~~l~l~~~gl~ 292 (499)
T 1xdi_A 239 RLFKNARAASVT--R-TGAGV-LVTM------------------TDGRTVEGSHALMTIGSVPNT----SGLGLERVGIQ 292 (499)
T ss_dssp EEETTCCEEEEE--E-CSSSE-EEEE------------------TTSCEEEESEEEECCCEEECC----SSSCTTTTTCC
T ss_pred EEEeCCEEEEEE--E-eCCEE-EEEE------------------CCCcEEEcCEEEECCCCCcCC----CcCCchhcCce
Confidence 999999999997 4 23333 1221 122479999999999999986 23 4667888
Q ss_pred cCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 362 ~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 293 ~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 293 LGRGNYLTVDRV--SRTLATGIYAAGDCTGLLPLAS-VAAMQGRIAMYHALG 341 (499)
T ss_dssp CBTTTBCCCCSS--SBCSSTTEEECSGGGTSCSCHH-HHHHHHHHHHHHHTT
T ss_pred ECCCCCEEECCC--cccCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 888899999988 7899999999999987665444 799999999999974
No 50
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=99.97 E-value=1.3e-30 Score=268.04 Aligned_cols=282 Identities=11% Similarity=0.159 Sum_probs=192.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCC---------------------------CCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD---------------------------HPE 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~---------------------------~~~ 70 (483)
.++|+||||||||+++|..|++.+ .+|+|||++ ..||.+. .|+.|. ...
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN 80 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 479999999999999999999988 999999998 4565421 111111 001
Q ss_pred hHHH-----------HHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 71 TKIV-----------INQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 71 ~~~~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
...+ ...+...+...+++++.+.... ..+.++.....||+||||||+ .|..|++||.+ .++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~g~~--~~~~~ 157 (450)
T 1ges_A 81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPDIPGVE--YGIDS 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCCSTTGG--GSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcc--ceecH
Confidence 1111 1223344566789998876532 234443334579999999998 57777788863 34444
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 158 ~~~~~~----------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l 203 (450)
T 1ges_A 158 DGFFAL----------P---ALPERVAVVGAGYIGVELGGVING--------------------LG-AKTHLFEMFDAPL 203 (450)
T ss_dssp HHHHHC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSS
T ss_pred HHhhhh----------h---hcCCeEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEeCCchh
Confidence 443321 0 136899999999999999999986 34 5899999886543
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..|. +...+.+.+.+. +.||+++++..+.++.
T Consensus 204 ~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~- 235 (450)
T 1ges_A 204 PSFD----------------------------------PMISETLVEVMN-------------AEGPQLHTNAIPKAVV- 235 (450)
T ss_dssp TTSC----------------------------------HHHHHHHHHHHH-------------HHSCEEECSCCEEEEE-
T ss_pred hhhh----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE-
Confidence 2222 111222233333 5689999999999997
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~ 376 (483)
. +++....+++. +| +++++|.||+|+|++|+. ..+ ..+..|+.++++|+|.+|++ +
T Consensus 236 -~-~~~~~~~v~~~----------------~g--~~i~~D~vv~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~~--~ 291 (450)
T 1ges_A 236 -K-NTDGSLTLELE----------------DG--RSETVDCLIWAIGREPAN-DNI-NLEAAGVKTNEKGYIVVDKY--Q 291 (450)
T ss_dssp -E-CTTSCEEEEET----------------TS--CEEEESEEEECSCEEESC-TTS-CHHHHTCCBCTTSCBCCCTT--S
T ss_pred -E-eCCcEEEEEEC----------------CC--cEEEcCEEEECCCCCcCC-CCC-CchhcCceECCCCCEeECCC--C
Confidence 3 22221123221 23 379999999999999976 111 13456788888999999998 7
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|+.|+|||+|||+..+.... .|+.||+.+|.+|..
T Consensus 292 ~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 292 NTNIEGIYAVGDNTGAVELTP-VAVAAGRRLSERLFN 327 (450)
T ss_dssp BCSSTTEEECSGGGTSCCCHH-HHHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEeccCCCCccHH-HHHHHHHHHHHHHcC
Confidence 799999999999986665444 799999999999974
No 51
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=99.97 E-value=2.4e-30 Score=267.89 Aligned_cols=294 Identities=16% Similarity=0.159 Sum_probs=187.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCC-CChHH-------HHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETKI-------VINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~-~~~~~-------~~~~~~~~~~~~~v 87 (483)
+++|+|||||+||++||..|++.+++.+|+|||+++.++. ...++ .++. ....+ +..+...+.+..++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~-~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi 81 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISY-GGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDV 81 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--------------------------------------------C
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccc-cccccchhhcCCCCchHHhccccchhccCHHHHhhhcCc
Confidence 4799999999999999999999955599999999987531 11111 0111 11112 23334444445788
Q ss_pred EEEeCeEEce------EEEecc---e---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCC
Q 011535 88 SFFGNVTLGS------SVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPD 155 (483)
Q Consensus 88 ~~~~~~~v~~------~~~~~~---~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 155 (483)
+++.+..+.. .+.+.+ + ...||+||+|||+ .+..+++||.+.+++++...+........ .+.
T Consensus 82 ~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~---~l~-- 155 (472)
T 3iwa_A 82 EALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS-KANRPPVEGMDLAGVTPVTNLDEAEFVQH---AIS-- 155 (472)
T ss_dssp EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCSCTTTTSBTEEECCSHHHHHHHHH---HCC--
T ss_pred EEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC-CcCCCCCCCCCCCCEEEeCCHHHHHHHHH---Hhh--
Confidence 8888776632 233332 2 3469999999998 67788899988777765543321110000 000
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeE
Q 011535 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (483)
Q Consensus 156 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~ 235 (483)
...+++++|||+|++|+|+|..|.+ ....+|+++.|.+.+......+
T Consensus 156 ~~~~~~vvViGgG~~g~e~A~~l~~--------------------~~g~~Vtlv~~~~~~l~~~~~~------------- 202 (472)
T 3iwa_A 156 AGEVSKAVIVGGGFIGLEMAVSLAD--------------------MWGIDTTVVELADQIMPGFTSK------------- 202 (472)
T ss_dssp TTSCSEEEEECCSHHHHHHHHHHHH--------------------HHCCEEEEECSSSSSSTTTSCH-------------
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH--------------------hcCCcEEEEEccCcccccccCH-------------
Confidence 0146899999999999999999885 3135899999987553211111
Q ss_pred EeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee
Q 011535 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~ 315 (483)
.....+.+.+. +.||+++++..+.++. . +++.+. +.+.
T Consensus 203 --------------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~-v~~~----- 240 (472)
T 3iwa_A 203 --------------------SLSQMLRHDLE-------------KNDVVVHTGEKVVRLE--G-ENGKVA-RVIT----- 240 (472)
T ss_dssp --------------------HHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E-SSSBEE-EEEE-----
T ss_pred --------------------HHHHHHHHHHH-------------hcCCEEEeCCEEEEEE--c-cCCeEE-EEEe-----
Confidence 11222223332 6799999999999997 3 355443 3332
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT- 394 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~- 394 (483)
+| ++++||.||+|+|++|+. ++....|+.++++|++.+|++ ++|+.|+|||+|||+..+.
T Consensus 241 -----------~g--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~~~g~i~vd~~--~~t~~~~Iya~GD~~~~~~~ 301 (472)
T 3iwa_A 241 -----------DK--RTLDADLVILAAGVSPNT----QLARDAGLELDPRGAIIVDTR--MRTSDPDIFAGGDCVTIPNL 301 (472)
T ss_dssp -----------SS--CEEECSEEEECSCEEECC----HHHHHHTCCBCTTCCEECCTT--CBCSSTTEEECGGGEEEEBT
T ss_pred -----------CC--CEEEcCEEEECCCCCcCH----HHHHhCCccCCCCCCEEECCC--cccCCCCEEEeccceecccc
Confidence 22 379999999999999986 344566888888999999987 7899999999999984211
Q ss_pred --------chhHhhHHHHHHHHHHHHH
Q 011535 395 --------GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 --------~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|+.
T Consensus 302 ~~g~~~~~~~~~~A~~~g~~aa~~i~g 328 (472)
T 3iwa_A 302 VTGKPGFFPLGSMANRQGRVIGTNLAD 328 (472)
T ss_dssp TTSSEECCCCTTHHHHHHHHHHHHHTT
T ss_pred cCCceeecchHHHHHHHHHHHHHHhcC
Confidence 1223699999999999874
No 52
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.97 E-value=3.2e-30 Score=273.07 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=197.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCC-CChH-HHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETK-IVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
++|+||||||||++||..|++.+++.+|+|||+.+.++. ...++ .++. .... .+...+..+.++.+++++.+..
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF-ANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 689999999999999999999966699999999987641 11111 0111 1111 2223344445556899888877
Q ss_pred Ece------EEEecc---e---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 95 LGS------SVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 95 v~~------~~~~~~---~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
+.. .+.+.+ + ...||+||||||+ .++.+++||.+..++++...+..... ... .+ ....+++|
T Consensus 81 V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~ipG~~~~~v~~~~~~~~~~~-l~~--~~--~~~~~~~v 154 (565)
T 3ntd_A 81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDMDR-ILQ--TI--QMNNVEHA 154 (565)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTCCSTTEECCSSHHHHHH-HHH--HH--HHTTCSEE
T ss_pred EEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHH-HHH--HH--hhCCCCEE
Confidence 632 333332 2 3469999999999 68888999988777776554321100 000 00 00146899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ .+|+++.|++.+...+..
T Consensus 155 vViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~--------------------- 192 (565)
T 3ntd_A 155 TVVGGGFIGLEMMESLHH--------------------LG-IKTTLLELADQVMTPVDR--------------------- 192 (565)
T ss_dssp EEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSCTTSCH---------------------
T ss_pred EEECCCHHHHHHHHHHHh--------------------cC-CcEEEEEcCCccchhcCH---------------------
Confidence 999999999999999986 34 579999998765432221
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.....+.+.+. ++||+++++..+.++. .+.++.+...............+..
T Consensus 193 -------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (565)
T 3ntd_A 193 -------------EMAGFAHQAIR-------------DQGVDLRLGTALSEVS--YQVQTHVASDAAGEDTAHQHIKGHL 244 (565)
T ss_dssp -------------HHHHHHHHHHH-------------HTTCEEEETCCEEEEE--EECCCCCCCGGGTCCCTTCCTTCEE
T ss_pred -------------HHHHHHHHHHH-------------HCCCEEEeCCeEEEEe--ccccccccccccccccccccCCCcE
Confidence 11112223332 6799999999999887 2101110000000000000000110
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC------CCc--
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------GPT-- 394 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~------g~~-- 394 (483)
..+ ..++++++||.||+|+|++|++ ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+. |..
T Consensus 245 ~v~-~~~g~~i~~D~vi~a~G~~p~~----~l~~~~g~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~ 317 (565)
T 3ntd_A 245 SLT-LSNGELLETDLLIMAIGVRPET----QLARDAGLAIGELGGIKVNAM--MQTSDPAIYAVGDAVEEQDFVTGQACL 317 (565)
T ss_dssp EEE-ETTSCEEEESEEEECSCEEECC----HHHHHHTCCBCTTSSBCCCTT--CBCSSTTEEECGGGBCEEBTTTCCEEC
T ss_pred EEE-EcCCCEEEcCEEEECcCCccch----HHHHhCCcccCCCCCEEECCC--cccCCCCEEEeeeeEeeccccCCceee
Confidence 011 1122389999999999999986 354566888888999999987 7899999999999974 221
Q ss_pred -chhHhhHHHHHHHHHHHHH
Q 011535 395 -GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 -~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|+.
T Consensus 318 ~~~~~~A~~~g~~aa~~i~g 337 (565)
T 3ntd_A 318 VPLAGPANRQGRMAADNMFG 337 (565)
T ss_dssp CCCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhcC
Confidence 1233689999999999974
No 53
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=99.97 E-value=5e-30 Score=264.79 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=193.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCC-------------------------CCChH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPD-------------------------HPETK 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~-------------------------~~~~~ 72 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+ .||.+ ..++.|. .....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g--~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLG--LKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 478999999999999999999998 9999999987 55532 1121111 01111
Q ss_pred HHHH-----------HHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCC-CCCCCCCCeeecc
Q 011535 73 IVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGVHSAR 137 (483)
Q Consensus 73 ~~~~-----------~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~-ipg~~~~~v~~a~ 137 (483)
.+.. .+...++..+++++.+..+. ..+.+......||+||||||+ .|..++ +++. ..++++.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs-~p~~p~gi~~~--~~v~~~~ 159 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGS-EPLELKGFPFG--EDVWDST 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCBTTBCCS--SSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCC-CCCCCCCCCCC--CcEEcHH
Confidence 1111 13345566789998887542 234443233579999999998 455543 6662 2455554
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++...- +. .+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.+..
T Consensus 160 ~~~~l~-----------~~-~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~ 206 (464)
T 2eq6_A 160 RALKVE-----------EG-LPKRLLVIGGGAVGLELGQVYRR--------------------LG-AEVTLIEYMPEILP 206 (464)
T ss_dssp HHTCGG-----------GC-CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSST
T ss_pred HHHhhh-----------hh-cCCEEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEEcCCcccc
Confidence 433110 00 35899999999999999999886 44 48999999875432
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +...+.+.+.+. +.||+++++..+.++.
T Consensus 207 ~~~----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~-- 237 (464)
T 2eq6_A 207 QGD----------------------------------PETAALLRRALE-------------KEGIRVRTKTKAVGYE-- 237 (464)
T ss_dssp TSC----------------------------------HHHHHHHHHHHH-------------HTTCEEECSEEEEEEE--
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------hcCCEEEcCCEEEEEE--
Confidence 211 111222223332 6789999999999997
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. +++.+ .+++.. + .+|+..++++|.||+|+|++|+.- .+ ..+..|+.++++|++.+|++ ++
T Consensus 238 ~-~~~~~-~v~~~~-----~--------~~g~~~~i~~D~vv~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~vd~~--~~ 298 (464)
T 2eq6_A 238 K-KKDGL-HVRLEP-----A--------EGGEGEEVVVDKVLVAVGRKPRTE-GL-GLEKAGVKVDERGFIRVNAR--ME 298 (464)
T ss_dssp E-ETTEE-EEEEEE-----T--------TCCSCEEEEESEEEECSCEEESCT-TS-SHHHHTCCBCTTSCBCCCTT--CB
T ss_pred E-eCCEE-EEEEee-----c--------CCCceeEEEcCEEEECCCcccCCC-CC-ChhhcCceecCCCCEEECCC--cc
Confidence 3 23322 233321 0 013334899999999999999861 11 13456778888899999987 77
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 299 t~~~~Iya~GD~~~~~~l~~-~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 299 TSVPGVYAIGDAARPPLLAH-KAMREGLIAAENAAG 333 (464)
T ss_dssp CSSTTEEECGGGTCSSCCHH-HHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 99999999999987666555 799999999999974
No 54
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=99.97 E-value=4.2e-30 Score=259.08 Aligned_cols=290 Identities=15% Similarity=0.200 Sum_probs=197.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CC-ceecccCCCCCChHHHHH-HHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FG-LVRSGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-gg-l~~~g~~p~~~~~~~~~~-~~~~~~~~~~v~~~~~~~v 95 (483)
.++|+|||||+||+++|..|++.+++.+|+|||+++.. +. .+.....+......++.. .+.++++..+++++.+..+
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 83 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV 83 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence 47999999999999999999999866789999987521 11 111112233333444432 3455566778999876543
Q ss_pred c------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 96 G------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 96 ~------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
. ..+.+.+....||+||+|||+ .+..+++||.+.+++++..++..+.... ..+..+++++|||+|.
T Consensus 84 ~~i~~~~~~v~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~~~-------~~~~~~~~v~ViGgG~ 155 (384)
T 2v3a_A 84 TGIDPGHQRIWIGEEEVRYRDLVLAWGA-EPIRVPVEGDAQDALYPINDLEDYARFR-------QAAAGKRRVLLLGAGL 155 (384)
T ss_dssp CEEEGGGTEEEETTEEEECSEEEECCCE-EECCCCCBSTTTTCEEECSSHHHHHHHH-------HHHTTCCEEEEECCSH
T ss_pred EEEECCCCEEEECCcEEECCEEEEeCCC-CcCCCCCCCcCcCCEEEECCHHHHHHHH-------HhhccCCeEEEECCCH
Confidence 2 345555555679999999999 5777789988766787776654321100 0011468999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.+.+.+...+...
T Consensus 156 ~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~~~~~~~~--------------------------- 187 (384)
T 2v3a_A 156 IGCEFANDLSS--------------------GG-YQLDVVAPCEQVMPGLLHP--------------------------- 187 (384)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTSCH---------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CeEEEEecCcchhhcccCH---------------------------
Confidence 99999999986 34 4799999887543222111
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
...+.+.+.+. +.|++++++..+.++. . +++. ..+++. +|
T Consensus 188 ------~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~-~~v~~~----------------~g- 227 (384)
T 2v3a_A 188 ------AAAKAVQAGLE-------------GLGVRFHLGPVLASLK--K-AGEG-LEAHLS----------------DG- 227 (384)
T ss_dssp ------HHHHHHHHHHH-------------TTTCEEEESCCEEEEE--E-ETTE-EEEEET----------------TS-
T ss_pred ------HHHHHHHHHHH-------------HcCCEEEeCCEEEEEE--e-cCCE-EEEEEC----------------CC-
Confidence 11122223332 6799999999999987 3 2222 122221 22
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC--CC-cchhHhhHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR--GP-TGIIATNLYCAEE 406 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~--g~-~~~~~~a~~~g~~ 406 (483)
+++++|.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+. ++ ......|..||+.
T Consensus 228 -~~i~~d~vv~a~G~~p~~----~l~~~~g~~~~-~g-i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~ 298 (384)
T 2v3a_A 228 -EVIPCDLVVSAVGLRPRT----ELAFAAGLAVN-RG-IVVDRS--LRTSHANIYALGDCAEVDGLNLLYVMPLMACARA 298 (384)
T ss_dssp -CEEEESEEEECSCEEECC----HHHHHTTCCBS-SS-EEECTT--CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHH
T ss_pred -CEEECCEEEECcCCCcCH----HHHHHCCCCCC-CC-EEECCC--CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHH
Confidence 479999999999999986 35566778776 57 999987 7799999999999974 22 2234468999999
Q ss_pred HHHHHHH
Q 011535 407 TVASISE 413 (483)
Q Consensus 407 ~a~~I~~ 413 (483)
+|.+|..
T Consensus 299 ~a~~i~g 305 (384)
T 2v3a_A 299 LAQTLAG 305 (384)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9999863
No 55
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=99.97 E-value=5.4e-30 Score=263.81 Aligned_cols=289 Identities=13% Similarity=0.180 Sum_probs=195.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCC---ChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP---ETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~---~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
++|+|||||+||+++|..|++.+++.+|+|||+.+.++.. ..++ ..+.. ..+++...+.+.+.+.+++++.+.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 79 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFL-SCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRH 79 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBC-GGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcc-cccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCC
Confidence 5899999999999999999998444999999998864321 1110 01111 122222223444556789987776
Q ss_pred EEc------eEEEecc------eeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 94 TLG------SSVSLSE------LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 94 ~v~------~~~~~~~------~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.+. ..+.+.+ ....||+||||||+ .+..+++||.+.+++++...+.....-. . ....+++
T Consensus 80 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~~~~~v~~~~~~~~~~~~~----~---~~~~~~~ 151 (452)
T 2cdu_A 80 QVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS-KPTVPPIPGIDSSRVYLCKNYNDAKKLF----E---EAPKAKT 151 (452)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTSTTEEECSSHHHHHHHH----H---HGGGCSE
T ss_pred EEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC-CcCCCCCCCCCCCCEEEeCcHHHHHHHH----H---HhccCCe
Confidence 542 2244432 23479999999998 5777889998777777654332110000 0 0114689
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
++|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+.......
T Consensus 152 vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~------------------- 191 (452)
T 2cdu_A 152 ITIIGSGYIGAELAEAYSN--------------------QN-YNVNLIDGHERVLYKYFDK------------------- 191 (452)
T ss_dssp EEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSSSTTTTTSCH-------------------
T ss_pred EEEECcCHHHHHHHHHHHh--------------------cC-CEEEEEEcCCchhhhhhhh-------------------
Confidence 9999999999999999985 34 5899999987643211111
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
.....+.+.+. ++||+++++..+.++. . +++++..+..
T Consensus 192 --------------~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~--~-~~~~v~~v~~------------ 229 (452)
T 2cdu_A 192 --------------EFTDILAKDYE-------------AHGVNLVLGSKVAAFE--E-VDDEIITKTL------------ 229 (452)
T ss_dssp --------------HHHHHHHHHHH-------------HTTCEEEESSCEEEEE--E-ETTEEEEEET------------
T ss_pred --------------hHHHHHHHHHH-------------HCCCEEEcCCeeEEEE--c-CCCeEEEEEe------------
Confidence 11222223333 6799999999999997 3 2454432221
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-------
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT------- 394 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~------- 394 (483)
+| ++++||.||+|+|++|+. ++.+.. +.++++|+|.+|++ ++|+.|+|||+|||+..+.
T Consensus 230 -----~g--~~i~~D~vv~a~G~~p~~----~ll~~~-l~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~ 295 (452)
T 2cdu_A 230 -----DG--KEIKSDIAILCIGFRPNT----ELLKGK-VAMLDNGAIITDEY--MHSSNRDIFAAGDSAAVHYNPTNSNA 295 (452)
T ss_dssp -----TS--CEEEESEEEECCCEEECC----GGGTTT-SCBCTTSCBCCCTT--SBCSSTTEEECSTTBCEEETTTTEEE
T ss_pred -----CC--CEEECCEEEECcCCCCCH----HHHHHh-hhcCCCCCEEECCC--cCcCCCCEEEcceEEEeccccCCCee
Confidence 12 379999999999999986 344555 77788899999998 7899999999999986421
Q ss_pred --chhHhhHHHHHHHHHHHHH
Q 011535 395 --GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 --~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|..
T Consensus 296 ~~~~~~~A~~~g~~aa~~i~g 316 (452)
T 2cdu_A 296 YIPLATNAVRQGRLVGLNLTE 316 (452)
T ss_dssp CCCCHHHHHHHHHHHHHTSSS
T ss_pred ecchHHHHHHHHHHHHHHhCC
Confidence 2334799999999999863
No 56
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.97 E-value=1.3e-29 Score=264.11 Aligned_cols=282 Identities=12% Similarity=0.176 Sum_probs=187.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------cccCCC-CCChH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD-HPETK 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-------------------------~g~~p~-~~~~~ 72 (483)
.++|+||||||||+++|..|++.+ .+|+|||+++ .||.+. +++... .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 368999999999999999999998 9999999985 555421 121110 01111
Q ss_pred -----------HHHHHHHHHHhcCCeEEEeCeEEc---eEEEecc-------------e-eeccCEEEEccCCCCCCCCC
Q 011535 73 -----------IVINQFSRVVQHERCSFFGNVTLG---SSVSLSE-------------L-RQLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 73 -----------~~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~-------------~-~~~yd~vvlAtG~~~~~~~~ 124 (483)
.+...+...++..+++++.+..+. ..+.+.+ . ...||+||||||+ .|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs-~p~~p~ 157 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN-KPVFPP 157 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCC-CBCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCC-CCCCCC
Confidence 122234445566789998875431 1233322 2 2469999999998 577778
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
+||.+ .++++.++.. +..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 158 i~G~~--~~~~~~~~~~--------------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~ 200 (500)
T 1onf_A 158 VKGIE--NTISSDEFFN--------------IKESKKIGIVGSGYIAVELINVIKR--------------------LG-I 200 (500)
T ss_dssp CTTGG--GCEEHHHHTT--------------CCCCSEEEEECCSHHHHHHHHHHHT--------------------TT-C
T ss_pred CCCCC--cccCHHHHhc--------------cCCCCeEEEECChHHHHHHHHHHHH--------------------cC-C
Confidence 88863 3444443321 1126899999999999999999986 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+|+++.|.+.+...|. +.....+.+.|. ++||+
T Consensus 201 ~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gv~ 233 (500)
T 1onf_A 201 DSYIFARGNRILRKFD----------------------------------ESVINVLENDMK-------------KNNIN 233 (500)
T ss_dssp EEEEECSSSSSCTTSC----------------------------------HHHHHHHHHHHH-------------HTTCE
T ss_pred eEEEEecCCccCcccc----------------------------------hhhHHHHHHHHH-------------hCCCE
Confidence 8999999876543222 111222223333 67999
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. .++++.+ .+.+. +|+. ++++|.||+|+|++|+.- .+ ..+..|+.+ +
T Consensus 234 i~~~~~v~~i~--~~~~~~~-~v~~~----------------~g~~-~~~~D~vi~a~G~~p~~~-~l-~~~~~g~~~-~ 290 (500)
T 1onf_A 234 IVTFADVVEIK--KVSDKNL-SIHLS----------------DGRI-YEHFDHVIYCVGRSPDTE-NL-KLEKLNVET-N 290 (500)
T ss_dssp EECSCCEEEEE--ESSTTCE-EEEET----------------TSCE-EEEESEEEECCCBCCTTT-TS-SCTTTTCCB-S
T ss_pred EEECCEEEEEE--EcCCceE-EEEEC----------------CCcE-EEECCEEEECCCCCcCCC-CC-CchhcCccc-c
Confidence 99999999997 3112322 23221 2321 399999999999999861 11 135678888 7
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCC---------------------------------CCcchhHhhHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKR---------------------------------GPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~---------------------------------g~~~~~~~a~~~g~~~a~~I 411 (483)
+|+|.+|++ ++|+.|+|||+|||+. +.......|+.||+.+|.+|
T Consensus 291 ~G~i~vd~~--~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 368 (500)
T 1onf_A 291 NNYIVVDEN--QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRL 368 (500)
T ss_dssp SSCEEECTT--CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCC--cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHH
Confidence 899999998 6799999999999981 22233447999999999999
Q ss_pred HH
Q 011535 412 SE 413 (483)
Q Consensus 412 ~~ 413 (483)
..
T Consensus 369 ~g 370 (500)
T 1onf_A 369 FL 370 (500)
T ss_dssp HS
T ss_pred hC
Confidence 74
No 57
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=99.97 E-value=8e-30 Score=263.10 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=192.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-c------------------------ccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-S------------------------GVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~------------------------g~~p~--~~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||++ .+||.+. . ++... ....
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFG--KRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDW 80 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCC--CcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 579999999999999999999988 999999998 4565421 1 11110 1111
Q ss_pred HHH-----------HHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecc
Q 011535 72 KIV-----------INQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (483)
Q Consensus 72 ~~~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~ 137 (483)
..+ ...+...+...+++++.+.... ..+.++.....||+||||||+ .|..|++||.+ .++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~G~~--~~~~~~ 157 (463)
T 2r9z_A 81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGG-RPIVPRLPGAE--LGITSD 157 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCCSCTTGG--GSBCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCC-CCCCCCCCCcc--ceecHH
Confidence 111 1223344566789998876532 234443334579999999998 57777788863 244444
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++... . ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|++.+..
T Consensus 158 ~~~~~----------~---~~~~~vvVvGgG~~g~e~A~~l~~--------------------~G-~~Vtlv~~~~~~l~ 203 (463)
T 2r9z_A 158 GFFAL----------Q---QQPKRVAIIGAGYIGIELAGLLRS--------------------FG-SEVTVVALEDRLLF 203 (463)
T ss_dssp HHHHC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSST
T ss_pred HHhhh----------h---ccCCEEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEcCCcccc
Confidence 33211 0 135799999999999999999986 34 58999999876433
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.|.. .....+.+.+. +.||+++++..+.++.
T Consensus 204 ~~~~----------------------------------~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~-- 234 (463)
T 2r9z_A 204 QFDP----------------------------------LLSATLAENMH-------------AQGIETHLEFAVAALE-- 234 (463)
T ss_dssp TSCH----------------------------------HHHHHHHHHHH-------------HTTCEEESSCCEEEEE--
T ss_pred ccCH----------------------------------HHHHHHHHHHH-------------HCCCEEEeCCEEEEEE--
Confidence 2221 11112223332 6789999999999997
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. +++. ..+++. +|+. ++++|.||+|+|++|+. ..+ ..+..|+.++++|+|.+|++ ++
T Consensus 235 ~-~~~~-~~v~~~----------------~G~~-~i~~D~vv~a~G~~p~~-~~l-~~~~~g~~~~~~G~i~vd~~--~~ 291 (463)
T 2r9z_A 235 R-DAQG-TTLVAQ----------------DGTR-LEGFDSVIWAVGRAPNT-RDL-GLEAAGIEVQSNGMVPTDAY--QN 291 (463)
T ss_dssp E-ETTE-EEEEET----------------TCCE-EEEESEEEECSCEEESC-TTS-CHHHHTCCCCTTSCCCCCTT--SB
T ss_pred E-eCCe-EEEEEe----------------CCcE-EEEcCEEEECCCCCcCC-CCC-CchhcCCccCCCCCEeECCC--Cc
Confidence 3 1222 122221 2322 79999999999999976 111 12455788888999999988 77
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+..+.... .|+.+|+.+|.+|..
T Consensus 292 t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 292 TNVPGVYALGDITGRDQLTP-VAIAAGRRLAERLFD 326 (463)
T ss_dssp CSSTTEEECGGGGTSCCCHH-HHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 99999999999976655444 799999999999874
No 58
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=99.97 E-value=1.1e-29 Score=263.36 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=195.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCCChHHHHHHHHH-HHhcCCeEEEeCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHPETKIVINQFSR-VVQHERCSFFGNV 93 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~~~~~~~~~~~~-~~~~~~v~~~~~~ 93 (483)
+++|+||||||||+++|..|++.+++.+|+|||+.+.+++. ..+ ........+++.....+ +.+..+++++.+.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~ 114 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA-QCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRH 114 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC-GGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC-CCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCC
Confidence 47999999999999999999997444999999998865321 111 10111122222222222 3345589998876
Q ss_pred EEc------eEEEecc---e---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 94 TLG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 94 ~v~------~~~~~~~---~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.+. ..+.+.+ + ...||+||||||+ .++.+++||.+.+++++...+.....-... +. + ..+++
T Consensus 115 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~---~~-~-~~~~~ 188 (480)
T 3cgb_A 115 EVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV-RPVMPEWEGRDLQGVHLLKTIPDAERILKT---LE-T-NKVED 188 (480)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCBTTTSBTEECCSSHHHHHHHHHH---HH-S-SCCCE
T ss_pred EEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC-cccCCCCCCccCCCEEEeCCHHHHHHHHHH---hh-h-cCCCe
Confidence 552 2343332 3 3579999999998 577778999877777764433211100000 00 0 14689
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ .+ .+|+++.|.+.+...+.
T Consensus 189 vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~--------------------- 226 (480)
T 3cgb_A 189 VTIIGGGAIGLEMAETFVE--------------------LG-KKVRMIERNDHIGTIYD--------------------- 226 (480)
T ss_dssp EEEECCHHHHHHHHHHHHH--------------------TT-CEEEEECCGGGTTSSSC---------------------
T ss_pred EEEECCCHHHHHHHHHHHh--------------------cC-CeEEEEEeCCchhhcCC---------------------
Confidence 9999999999999999886 34 57999998865432221
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
+.+.+.+.+.+. +.||+++++..+.++. . ++++..+..
T Consensus 227 -------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~--~--~~~v~~v~~------------ 264 (480)
T 3cgb_A 227 -------------GDMAEYIYKEAD-------------KHHIEILTNENVKAFK--G--NERVEAVET------------ 264 (480)
T ss_dssp -------------HHHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E--SSBEEEEEE------------
T ss_pred -------------HHHHHHHHHHHH-------------HcCcEEEcCCEEEEEE--c--CCcEEEEEE------------
Confidence 111222223332 6789999999999997 4 344433321
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-------
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT------- 394 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~------- 394 (483)
.+ .+++||.||+|+|++|+. ++.+..|+.++++|+|.+|++ ++|+.|+|||+|||+..+.
T Consensus 265 -----~~--~~i~~D~vi~a~G~~p~~----~~l~~~g~~~~~~G~I~Vd~~--~~ts~p~IyA~GD~~~~~~~~~g~~~ 331 (480)
T 3cgb_A 265 -----DK--GTYKADLVLVSVGVKPNT----DFLEGTNIRTNHKGAIEVNAY--MQTNVQDVYAAGDCATHYHVIKEIHD 331 (480)
T ss_dssp -----TT--EEEECSEEEECSCEEESC----GGGTTSCCCBCTTSCBCCCTT--SBCSSTTEEECGGGBCEEBTTTCSEE
T ss_pred -----CC--CEEEcCEEEECcCCCcCh----HHHHhCCcccCCCCCEEECCC--ccCCCCCEEEeeeEEEecCCCCCcce
Confidence 11 379999999999999976 355777888888899999998 7899999999999985321
Q ss_pred --chhHhhHHHHHHHHHHHHH
Q 011535 395 --GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 --~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|..
T Consensus 332 ~~~~~~~A~~qg~~aa~~i~g 352 (480)
T 3cgb_A 332 HIPIGTTANKQGRLAGLNMLD 352 (480)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT
T ss_pred ecchHHHHHHHHHHHHHHhcC
Confidence 2234799999999999864
No 59
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=99.97 E-value=3e-29 Score=260.29 Aligned_cols=284 Identities=14% Similarity=0.151 Sum_probs=192.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------cccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-------------------------~g~~p~--~~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||... +|+... ....
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 468999999999999999999998 99999999877765321 111100 1112
Q ss_pred HHHH-----------HHHHHHHhcCCeEEEeCeEEc---eEEEe--cce-------------eeccCEEEEccCCCCCCC
Q 011535 72 KIVI-----------NQFSRVVQHERCSFFGNVTLG---SSVSL--SEL-------------RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~v~~~~~~~v~---~~~~~--~~~-------------~~~yd~vvlAtG~~~~~~ 122 (483)
..+. ..+...++..+++++.+..+. ..+.+ .++ ...||+||+|||+. +..
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~-p~~ 162 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR-VTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEE-ECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCC-CCC
Confidence 2221 123445566789988876542 12222 222 34699999999994 554
Q ss_pred CC-CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC
Q 011535 123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (483)
Q Consensus 123 ~~-ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~ 201 (483)
++ ++ .+. .+++..++... . ..+++++|||+|.+|+|+|..|.+ .
T Consensus 163 ~~~i~-~~~-~v~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 207 (482)
T 1ojt_A 163 LPFIP-EDP-RIIDSSGALAL----------K---EVPGKLLIIGGGIIGLEMGTVYST--------------------L 207 (482)
T ss_dssp CSSCC-CCT-TEECHHHHTTC----------C---CCCSEEEEESCSHHHHHHHHHHHH--------------------H
T ss_pred CCCCC-ccC-cEEcHHHHhcc----------c---ccCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 44 55 232 45554443210 0 136899999999999999999885 3
Q ss_pred CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011535 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (483)
Q Consensus 202 ~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~ 281 (483)
+ .+|+++.|.+.+...+. +...+.+.+.|. ++
T Consensus 208 G-~~Vtlv~~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~ 239 (482)
T 1ojt_A 208 G-SRLDVVEMMDGLMQGAD----------------------------------RDLVKVWQKQNE-------------YR 239 (482)
T ss_dssp T-CEEEEECSSSSSSTTSC----------------------------------HHHHHHHHHHHG-------------GG
T ss_pred C-CeEEEEEECCccccccC----------------------------------HHHHHHHHHHHH-------------hc
Confidence 4 48999999876543222 111122223332 78
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc--cCCCC
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKG 359 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~--~~~~g 359 (483)
||+++++..+.++. . ++....+++.+. .+.++++++|.||+|+|++|+. ++ .+..|
T Consensus 240 gV~i~~~~~v~~i~--~--~~~~~~v~~~~~--------------~~~g~~~~~D~vv~a~G~~p~~----~~l~~~~~g 297 (482)
T 1ojt_A 240 FDNIMVNTKTVAVE--P--KEDGVYVTFEGA--------------NAPKEPQRYDAVLVAAGRAPNG----KLISAEKAG 297 (482)
T ss_dssp EEEEECSCEEEEEE--E--ETTEEEEEEESS--------------SCCSSCEEESCEEECCCEEECG----GGTTGGGTT
T ss_pred CCEEEECCEEEEEE--E--cCCeEEEEEecc--------------CCCceEEEcCEEEECcCCCcCC----CCCChhhcC
Confidence 99999999999997 3 222223333210 1112368899999999999986 23 36678
Q ss_pred cccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+.++++|+|.+|++ ++|+.|+|||+|||+..+.... .|..||+.+|.+|..
T Consensus 298 l~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 298 VAVTDRGFIEVDKQ--MRTNVPHIYAIGDIVGQPMLAH-KAVHEGHVAAENCAG 348 (482)
T ss_dssp CCCCTTSCCCCCTT--SBCSSTTEEECGGGTCSSCCHH-HHHHHHHHHHHHHTT
T ss_pred ceeCCCCCEeeCCC--cccCCCCEEEEEcccCCCccHH-HHHHHHHHHHHHHcC
Confidence 88888899999997 7899999999999987665555 799999999999974
No 60
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=99.97 E-value=6.3e-30 Score=264.10 Aligned_cols=282 Identities=15% Similarity=0.142 Sum_probs=193.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------cccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-------------------------~g~~p~--~~~~ 71 (483)
.++|+||||||+|+++|..|++.+ .+|+|||+ +.+||.+. +++... ....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALG--KKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW 81 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence 479999999999999999999999 99999999 56666321 111100 0111
Q ss_pred H-----------HHHHHHHHHHhcCCeEEEeCeEEc---eEEEe--cceeeccCEEEEccCCCCCC-CCCCCCCCCCCee
Q 011535 72 K-----------IVINQFSRVVQHERCSFFGNVTLG---SSVSL--SELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH 134 (483)
Q Consensus 72 ~-----------~~~~~~~~~~~~~~v~~~~~~~v~---~~~~~--~~~~~~yd~vvlAtG~~~~~-~~~ipg~~~~~v~ 134 (483)
. .+...+...+...+++++.+.... ..+.+ ......||+||+|||+ .+. .+++||.+ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~ 158 (463)
T 4dna_A 82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGG-HPSPHDALPGHE--LCI 158 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCE-EECCCTTSTTGG--GCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCC-CcccCCCCCCcc--ccc
Confidence 1 122234445556688888875431 23444 2234579999999998 566 77888865 234
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.
T Consensus 159 ~~~~~~~~----------~---~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~~Vt~v~~~~~ 204 (463)
T 4dna_A 159 TSNEAFDL----------P---ALPESILIAGGGYIAVEFANIFHG--------------------LG-VKTTLIYRGKE 204 (463)
T ss_dssp CHHHHTTC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSS
T ss_pred cHHHHhhh----------h---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCc
Confidence 43333210 0 146899999999999999999986 34 47999998875
Q ss_pred ccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCccee
Q 011535 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (483)
Q Consensus 215 ~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v 294 (483)
+...+. +...+.+.+.+. +.||+++++..+.++
T Consensus 205 ~l~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i 237 (463)
T 4dna_A 205 ILSRFD----------------------------------QDMRRGLHAAME-------------EKGIRILCEDIIQSV 237 (463)
T ss_dssp SSTTSC----------------------------------HHHHHHHHHHHH-------------HTTCEEECSCCEEEE
T ss_pred cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEECCCEEEEE
Confidence 432222 111222223332 679999999999999
Q ss_pred ecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC
Q 011535 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 295 ~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
. . +++.+..++. . .+| + +++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 238 ~--~-~~~~~~~v~~-~--------------~~g--~-i~aD~Vv~a~G~~p~~~-~l~-l~~~g~~~~~~G~i~vd~~- 293 (463)
T 4dna_A 238 S--A-DADGRRVATT-M--------------KHG--E-IVADQVMLALGRMPNTN-GLG-LEAAGVRTNELGAIIVDAF- 293 (463)
T ss_dssp E--E-CTTSCEEEEE-S--------------SSC--E-EEESEEEECSCEEESCT-TSS-TGGGTCCBCTTSCBCCCTT-
T ss_pred E--E-cCCCEEEEEE-c--------------CCC--e-EEeCEEEEeeCcccCCC-CCC-ccccCceECCCCCEeECcC-
Confidence 7 3 2222212220 0 122 3 99999999999999862 111 3567888999999999988
Q ss_pred CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.... .|..||+.+|.+|+.
T Consensus 294 -~~t~~~~iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 294 -SRTSTPGIYALGDVTDRVQLTP-VAIHEAMCFIETEYK 330 (463)
T ss_dssp -CBCSSTTEEECSGGGSSCCCHH-HHHHHHHHHHHHHHS
T ss_pred -CCCCCCCEEEEEecCCCCCChH-HHHHHHHHHHHHHcC
Confidence 6799999999999987666555 799999999999974
No 61
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=99.97 E-value=1.5e-29 Score=260.11 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=194.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCC-CCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APD-HPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~-~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++|+|||||+||+++|..|++.+++.+|+|||+++.++. ...++ ..+ ....+++...+.+.+.+.+++++.+..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 79 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF-LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB-CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc-ccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 589999999999999999999844499999999986542 11111 011 1122222223334455568998777665
Q ss_pred c------eEEEecc---ee---eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEE
Q 011535 96 G------SSVSLSE---LR---QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAV 163 (483)
Q Consensus 96 ~------~~~~~~~---~~---~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vv 163 (483)
. +.+.+.+ +. ..||+||||||+ .|..+++||.+.+++++...+.....-... + .+. .+++++
T Consensus 80 ~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~---~-~~~-~~~~vv 153 (447)
T 1nhp_A 80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFELDIPGKDLDNIYLMRGRQWAIKLKQK---T-VDP-EVNNVV 153 (447)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCSTTTTSBSEECCCHHHHHHHHHHH---H-TCT-TCCEEE
T ss_pred EEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHHHH---h-hhc-CCCeEE
Confidence 2 2344432 22 469999999998 577778999887778765443211100000 0 000 468999
Q ss_pred EEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccccc
Q 011535 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (483)
Q Consensus 164 VIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~ 243 (483)
|||+|++|+|+|..|.+ .+ .+|+++.+.+.+...+...
T Consensus 154 IiG~G~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~--------------------- 191 (447)
T 1nhp_A 154 VIGSGYIGIEAAEAFAK--------------------AG-KKVTVIDILDRPLGVYLDK--------------------- 191 (447)
T ss_dssp EECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTCCH---------------------
T ss_pred EECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCcccccccCCH---------------------
Confidence 99999999999999886 34 4899999987543211111
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCcee
Q 011535 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (483)
Q Consensus 244 ~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~ 323 (483)
.+...+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 192 ------------~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~--~~~v~~v~~-------------- 228 (447)
T 1nhp_A 192 ------------EFTDVLTEEME-------------ANNITIATGETVERYE--G--DGRVQKVVT-------------- 228 (447)
T ss_dssp ------------HHHHHHHHHHH-------------TTTEEEEESCCEEEEE--C--SSBCCEEEE--------------
T ss_pred ------------HHHHHHHHHHH-------------hCCCEEEcCCEEEEEE--c--cCcEEEEEE--------------
Confidence 11122223332 6799999999999997 4 344433322
Q ss_pred eccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------
Q 011535 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT--------- 394 (483)
Q Consensus 324 ~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~--------- 394 (483)
++ .++++|.||+|+|++|+. ++.+.. +.++.+|++.+|++ ++|+.|+|||+|||+..+.
T Consensus 229 ---~~--~~i~~d~vi~a~G~~p~~----~~~~~~-~~~~~~G~i~Vd~~--~~t~~~~Iya~GD~~~~~~~~~g~~~~~ 296 (447)
T 1nhp_A 229 ---DK--NAYDADLVVVAVGVRPNT----AWLKGT-LELHPNGLIKTDEY--MRTSEPDVFAVGDATLIKYNPADTEVNI 296 (447)
T ss_dssp ---SS--CEEECSEEEECSCEEESC----GGGTTT-SCBCTTSCBCCCTT--CBCSSTTEEECGGGSCEEEGGGTEEECC
T ss_pred ---CC--CEEECCEEEECcCCCCCh----HHHHhh-hhhcCCCcEEECcc--ccCCCCCEEEeeeEEEeeccCCCCceec
Confidence 12 379999999999999986 344555 67778899999998 7899999999999985321
Q ss_pred chhHhhHHHHHHHHHHHHH
Q 011535 395 GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 ~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|..
T Consensus 297 ~~~~~A~~qg~~aa~~i~g 315 (447)
T 1nhp_A 297 ALATNARKQGRFAVKNLEE 315 (447)
T ss_dssp CCHHHHHHHHHHHHHTSSS
T ss_pred hhHHHHHHHHHHHHHhhcC
Confidence 2334799999999999863
No 62
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=99.97 E-value=3.7e-29 Score=257.78 Aligned_cols=283 Identities=14% Similarity=0.179 Sum_probs=195.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCC-----------------------C--CChHH
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD-----------------------H--PETKI 73 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~-----------------------~--~~~~~ 73 (483)
++|+||||||||+++|..|++.+ .+|+|||+++.+||.+. +++.|. . .....
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLG--MKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCC--CeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence 58999999999999999999998 99999999987776532 111111 0 11111
Q ss_pred H-----------HHHHHHHHhcCCeEEEeCeEEc---eEEEec--ceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecc
Q 011535 74 V-----------INQFSRVVQHERCSFFGNVTLG---SSVSLS--ELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (483)
Q Consensus 74 ~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~~~~--~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~ 137 (483)
+ ...+.+.++..+++++.+..+. ..+.+. .....||+||+|||+ .|..++++|.+..++++..
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~-~p~~~~~~g~~~~~v~~~~ 158 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGS-APLIPPWAQVDYERVVTST 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCE-EECCCTTBCCCSSSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCC-CCCCCCCCCCCcCcEechH
Confidence 1 1123445566689988876542 123332 223579999999998 5777778886655666655
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.+..
T Consensus 159 ~~~~~----------~---~~~~~vvIiGgG~~g~e~A~~l~~--------------------~g-~~V~lv~~~~~~l~ 204 (455)
T 2yqu_A 159 EALSF----------P---EVPKRLIVVGGGVIGLELGVVWHR--------------------LG-AEVIVLEYMDRILP 204 (455)
T ss_dssp HHTCC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCT
T ss_pred Hhhcc----------c---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEecCCcccc
Confidence 44310 0 135899999999999999999885 34 47999998875432
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +.+.+.+.+.+. +.||+++++..+.++.
T Consensus 205 ~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~V~~i~-- 235 (455)
T 2yqu_A 205 TMD----------------------------------LEVSRAAERVFK-------------KQGLTIRTGVRVTAVV-- 235 (455)
T ss_dssp TSC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCCEEEEE--
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEEEEE--
Confidence 111 111222223332 5689999999999997
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. +++.+ .+++. + ++++++|.||+|+|++|+... + ..+..|+.++++|++.+|++ ++
T Consensus 236 ~-~~~~v-~v~~~----------------~--g~~i~~D~vv~A~G~~p~~~~-l-~~~~~g~~~~~~g~i~vd~~--~~ 291 (455)
T 2yqu_A 236 P-EAKGA-RVELE----------------G--GEVLEADRVLVAVGRRPYTEG-L-SLENAGLSTDERGRIPVDEH--LR 291 (455)
T ss_dssp E-ETTEE-EEEET----------------T--SCEEEESEEEECSCEEECCTT-C-CGGGGTCCCCTTSCCCCCTT--SB
T ss_pred E-eCCEE-EEEEC----------------C--CeEEEcCEEEECcCCCcCCCC-C-ChhhcCCccCCCCcEeECCC--cc
Confidence 3 22221 12111 1 247999999999999997621 1 13556788887899999987 77
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+.++.... .|..||+.+|.+|..
T Consensus 292 t~~~~iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 292 TRVPHIYAIGDVVRGPMLAH-KASEEGIAAVEHMVR 326 (455)
T ss_dssp CSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCCCccCHH-HHHHhHHHHHHHHcC
Confidence 99999999999987766555 799999999999986
No 63
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.97 E-value=9.9e-30 Score=270.40 Aligned_cols=293 Identities=15% Similarity=0.194 Sum_probs=201.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCC--ChHHHHHHHHHHHhcCCeEEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP--ETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~--~~~~~~~~~~~~~~~~~v~~~ 90 (483)
.+.+++|+|||||+||++||..|++.+++.+|+|||+.+.++. ...++ .++.. ..+.+..++..+.+..+++++
T Consensus 33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~-~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~ 111 (588)
T 3ics_A 33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF-ANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIR 111 (588)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEE
T ss_pred cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEE
Confidence 3456899999999999999999999965699999999987541 11111 01111 111233445666667789998
Q ss_pred eCeEEce------EEEec---ce---eeccCEEEEccCCCCCCCCCCCCC-CCCCeeecceeeeeecCCCCCCCCCCCCC
Q 011535 91 GNVTLGS------SVSLS---EL---RQLYHVVVLAYGAESDRALGIPGE-DLIGVHSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 91 ~~~~v~~------~~~~~---~~---~~~yd~vvlAtG~~~~~~~~ipg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
.+..+.. .+.+. ++ ...||+||||||+ .+..+++||. +.+++++...+......... +. + .
T Consensus 112 ~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~---l~-~-~ 185 (588)
T 3ics_A 112 VLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA-KPIVPSIPGIEEAKALFTLRNVPDTDRIKAY---ID-E-K 185 (588)
T ss_dssp CSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTTCTTEEECSSHHHHHHHHHH---HH-H-H
T ss_pred ECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC-CCCCCCCCCcccCCCeEEeCCHHHHHHHHHH---Hh-h-c
Confidence 8877632 23332 22 3469999999998 6777889998 67777776544321100000 00 0 1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+...+.
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~----------------- 227 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRE--------------------RG-IEVTLVEMANQVMPPID----------------- 227 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCTTSC-----------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEecCCcccccCC-----------------
Confidence 46899999999999999999986 34 57999998876543222
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.....+.+.+. +.||+++++..+.++. . +++ .+.+.
T Consensus 228 -----------------~~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~---~v~~~------- 264 (588)
T 3ics_A 228 -----------------YEMAAYVHEHMK-------------NHDVELVFEDGVDALE--E-NGA---VVRLK------- 264 (588)
T ss_dssp -----------------HHHHHHHHHHHH-------------HTTCEEECSCCEEEEE--G-GGT---EEEET-------
T ss_pred -----------------HHHHHHHHHHHH-------------HcCCEEEECCeEEEEe--c-CCC---EEEEC-------
Confidence 111222223332 6799999999999997 3 122 23321
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC------
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------ 391 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~------ 391 (483)
+| +++++|.||+|+|++|+. ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+.
T Consensus 265 ---------~g--~~i~~D~Vi~a~G~~p~~----~~l~~~g~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~ 327 (588)
T 3ics_A 265 ---------SG--SVIQTDMLILAIGVQPES----SLAKGAGLALGVRGTIKVNEK--FQTSDPHIYAIGDAIEVKDFVT 327 (588)
T ss_dssp ---------TS--CEEECSEEEECSCEEECC----HHHHHTTCCBCGGGCBCCCTT--SBCSSTTEEECGGGBCEEBTTT
T ss_pred ---------CC--CEEEcCEEEEccCCCCCh----HHHHhcCceEcCCCCEEECCc--cccCCCCEEEeeeeeecccccC
Confidence 22 379999999999999986 355667888888999999987 7899999999999984
Q ss_pred CC---cchhHhhHHHHHHHHHHHHH
Q 011535 392 GP---TGIIATNLYCAEETVASISE 413 (483)
Q Consensus 392 g~---~~~~~~a~~~g~~~a~~I~~ 413 (483)
|. ......|..||+.+|.+|+.
T Consensus 328 g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 328 ETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CcccccccHHHHHHHHHHHHHHhcC
Confidence 21 12333689999999999874
No 64
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.97 E-value=1e-29 Score=263.93 Aligned_cols=282 Identities=16% Similarity=0.164 Sum_probs=192.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-e------------------------cccCCCCC--Ch
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-R------------------------SGVAPDHP--ET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~------------------------~g~~p~~~--~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+ ..+||.+ . +++....+ ..
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALG--KRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCc--CEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 479999999999999999999999 99999999 5566642 1 12211111 11
Q ss_pred H-----------HHHHHHHHHHhcCCeEEEeCeEEc---eEEEec--ceeeccCEEEEccCCCCCC-CCCCCCCCCCCee
Q 011535 72 K-----------IVINQFSRVVQHERCSFFGNVTLG---SSVSLS--ELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH 134 (483)
Q Consensus 72 ~-----------~~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~--~~~~~yd~vvlAtG~~~~~-~~~ipg~~~~~v~ 134 (483)
. .+...+...+...+++++.+.... ..+.+. .....||+||||||+ .+. .+++||.+ .++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~ 179 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGA-KIVSNSAIKGSD--LCL 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCE-EECCC--CBTGG--GSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCC-CcccCCCCCCcc--ccc
Confidence 1 222334455666789988875432 234442 233579999999998 566 67788864 233
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.
T Consensus 180 ~~~~~~~~----------~---~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~ 225 (484)
T 3o0h_A 180 TSNEIFDL----------E---KLPKSIVIVGGGYIGVEFANIFHG--------------------LG-VKTTLLHRGDL 225 (484)
T ss_dssp CTTTGGGC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSS
T ss_pred cHHHHHhH----------H---hcCCcEEEECcCHHHHHHHHHHHH--------------------cC-CeEEEEECCCc
Confidence 33332210 0 146899999999999999999885 34 47999998875
Q ss_pred ccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCccee
Q 011535 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (483)
Q Consensus 215 ~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v 294 (483)
+...+. +.+...+.+.+. +.||+++++..+.++
T Consensus 226 ~l~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~V~~i 258 (484)
T 3o0h_A 226 ILRNFD----------------------------------YDLRQLLNDAMV-------------AKGISIIYEATVSQV 258 (484)
T ss_dssp SSTTSC----------------------------------HHHHHHHHHHHH-------------HHTCEEESSCCEEEE
T ss_pred cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEE
Confidence 432222 112222233333 568999999999999
Q ss_pred ecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC
Q 011535 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 295 ~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
. . +++.+ .+.+. +| +++++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 259 ~--~-~~~~v-~v~~~----------------~g--~~i~aD~Vi~A~G~~p~~~-~l~-l~~~g~~~~~~G~i~vd~~- 313 (484)
T 3o0h_A 259 Q--S-TENCY-NVVLT----------------NG--QTICADRVMLATGRVPNTT-GLG-LERAGVKVNEFGAVVVDEK- 313 (484)
T ss_dssp E--E-CSSSE-EEEET----------------TS--CEEEESEEEECCCEEECCT-TCC-HHHHTCCBCTTSCBCCCTT-
T ss_pred E--e-eCCEE-EEEEC----------------CC--cEEEcCEEEEeeCCCcCCC-CCC-hhhcCceECCCCCEeECCC-
Confidence 7 4 23433 33321 22 3799999999999999762 111 3456788888999999987
Q ss_pred CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++|+.|+|||+|||+.++.... .|+.+|+.+|.+|+..
T Consensus 314 -~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 314 -MTTNVSHIWAVGDVTGHIQLTP-VAIHDAMCFVKNAFEN 351 (484)
T ss_dssp -SBCSSTTEEECGGGGTSCCCHH-HHHHHHHHHHHHHHC-
T ss_pred -CCCCCCCEEEEEecCCCCcCHH-HHHHHHHHHHHHHcCC
Confidence 7799999999999987666555 7999999999999854
No 65
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=99.97 E-value=4.3e-30 Score=262.71 Aligned_cols=292 Identities=17% Similarity=0.178 Sum_probs=194.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-Cc--eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GL--VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-gl--~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
.++|+|||||+||+++|..|++.+.+.+|+|||+.+... .. +...+..+......+...+.+.+.+.+++++.++.+
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 479999999999999999999998444899999987632 11 011111111111222111234455678999988654
Q ss_pred c------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCC---eeecceeeeeecCCCCCCCCCCCCCCCCeEEEE
Q 011535 96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIG---VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (483)
Q Consensus 96 ~------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~---v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 165 (483)
. ..+.+.++ ...||+||+|||+ .++.+++||.+..+ +++......... +...+..+++|+||
T Consensus 84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~p~~~~i~G~~~~~~~~v~~~~~~~d~~~-------l~~~l~~~~~vvVi 155 (431)
T 1q1r_A 84 TAINRDRQQVILSDGRALDYDRLVLATGG-RPRPLPVASGAVGKANNFRYLRTLEDAEC-------IRRQLIADNRLVVI 155 (431)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTHHHHSTTEEESSSHHHHHH-------HHHTCCTTCEEEEE
T ss_pred EEEECCCCEEEECCCCEEECCEEEEcCCC-CccCCCCCCcccCCCceEEEECCHHHHHH-------HHHHhhcCCeEEEE
Confidence 2 24555544 3579999999999 57777888876444 654332211100 00012257899999
Q ss_pred cCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCC
Q 011535 166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (483)
Q Consensus 166 G~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~ 245 (483)
|+|++|+|+|..|.+ .+ .+|+++.+.+.+.......
T Consensus 156 GgG~~g~E~A~~l~~--------------------~G-~~Vtlv~~~~~~l~~~~~~----------------------- 191 (431)
T 1q1r_A 156 GGGYIGLEVAATAIK--------------------AN-MHVTLLDTAARVLERVTAP----------------------- 191 (431)
T ss_dssp CCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCH-----------------------
T ss_pred CCCHHHHHHHHHHHh--------------------CC-CEEEEEEeCCccccchhhH-----------------------
Confidence 999999999999986 34 4799999887543221111
Q ss_pred CCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccC-CCCceEEEEEeeeeeeCCCCCceee
Q 011535 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALKGGGPGKQYA 324 (483)
Q Consensus 246 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~-~~g~v~~v~~~~~~l~~~~~g~~~~ 324 (483)
.....+.+.+. +.||+++++..+.++. .+ +++++..+.+.
T Consensus 192 ----------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~~~~~~~v~~v~~~-------------- 232 (431)
T 1q1r_A 192 ----------PVSAFYEHLHR-------------EAGVDIRTGTQVCGFE--MSTDQQKVTAVLCE-------------- 232 (431)
T ss_dssp ----------HHHHHHHHHHH-------------HHTCEEECSCCEEEEE--ECTTTCCEEEEEET--------------
T ss_pred ----------HHHHHHHHHHH-------------hCCeEEEeCCEEEEEE--eccCCCcEEEEEeC--------------
Confidence 11112223332 5689999999999987 20 13555545432
Q ss_pred ccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---c------
Q 011535 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---G------ 395 (483)
Q Consensus 325 ~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---~------ 395 (483)
+| ++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+. |
T Consensus 233 --~G--~~i~~D~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~Vd~~--~~ts~~~IyA~GD~~~~~~~~~g~~~~~~ 300 (431)
T 1q1r_A 233 --DG--TRLPADLVIAGIGLIPNC----ELASAAGLQVD-NG-IVINEH--MQTSDPLIMAVGDCARFHSQLYDRWVRIE 300 (431)
T ss_dssp --TS--CEEECSEEEECCCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEEEETTTTEEEECC
T ss_pred --CC--CEEEcCEEEECCCCCcCc----chhhccCCCCC-CC-EEECCC--cccCCCCEEEEEeEEEEccccCCceEeeC
Confidence 22 379999999999999976 35566677775 46 888887 7899999999999986542 1
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 011535 396 IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.||+.+|.+|..
T Consensus 301 ~~~~A~~qg~~aa~~i~g 318 (431)
T 1q1r_A 301 SVPNALEQARKIAAILCG 318 (431)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 234699999999999964
No 66
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=99.96 E-value=6e-29 Score=258.40 Aligned_cols=290 Identities=16% Similarity=0.156 Sum_probs=191.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec--------CCCCCCce-e------------------------ccc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR--------LPTPFGLV-R------------------------SGV 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~--------~~~~ggl~-~------------------------~g~ 64 (483)
..++|+||||||||++||..|++.+ .+|+|||+ ...+||.+ . +|+
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 4579999999999999999999999 99999997 34566632 1 222
Q ss_pred CC---CCCChHHHHH-----------HHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCC
Q 011535 65 AP---DHPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 65 ~p---~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~ 122 (483)
.. .......+.. .+...+...+++++.+.... ..+...++ ...||+||||||+ .|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~ 161 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGG-RPRY 161 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCE-EECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCC-CCCC
Confidence 11 1112222221 12334555688888775541 12333333 3469999999998 5777
Q ss_pred CC-CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC
Q 011535 123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (483)
Q Consensus 123 ~~-ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~ 201 (483)
|+ +||.+.. ++++.++.. . . ..+++++|||+|++|+|+|..|.+ .
T Consensus 162 p~~i~G~~~~-~~~~~~~~~----~------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 207 (488)
T 3dgz_A 162 PTQVKGALEY-GITSDDIFW----L------K---ESPGKTLVVGASYVALECAGFLTG--------------------I 207 (488)
T ss_dssp CSSCBTHHHH-CBCHHHHTT----C------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------T
T ss_pred CCCCCCcccc-cCcHHHHHh----h------h---hcCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 77 8886422 233333221 0 0 145789999999999999999986 3
Q ss_pred CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011535 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (483)
Q Consensus 202 ~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~ 281 (483)
+ .+|+++.|+. ....+. +.+.+.+.+.+. ++
T Consensus 208 g-~~Vtlv~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~ 238 (488)
T 3dgz_A 208 G-LDTTVMMRSI-PLRGFD----------------------------------QQMSSLVTEHME-------------SH 238 (488)
T ss_dssp T-CCEEEEESSC-SSTTSC----------------------------------HHHHHHHHHHHH-------------HT
T ss_pred C-CceEEEEcCc-ccccCC----------------------------------HHHHHHHHHHHH-------------HC
Confidence 4 4799998864 221111 112222233333 67
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcc
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~ 361 (483)
||+++++..+.++. ..+++.+ .+++.+. .+++..++++|.||+|+|++|+.- .+. .+..|+.
T Consensus 239 gv~~~~~~~v~~i~--~~~~~~~-~v~~~~~-------------~~g~~~~~~~D~vi~a~G~~p~~~-~l~-l~~~g~~ 300 (488)
T 3dgz_A 239 GTQFLKGCVPSHIK--KLPTNQL-QVTWEDH-------------ASGKEDTGTFDTVLWAIGRVPETR-TLN-LEKAGIS 300 (488)
T ss_dssp TCEEEETEEEEEEE--ECTTSCE-EEEEEET-------------TTTEEEEEEESEEEECSCEEESCG-GGT-GGGGTCC
T ss_pred CCEEEeCCEEEEEE--EcCCCcE-EEEEEeC-------------CCCeeEEEECCEEEEcccCCcccC-cCC-ccccCcE
Confidence 99999999998887 3123333 3444320 124445789999999999999861 111 3556888
Q ss_pred cC-CCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 362 PN-IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 362 ~~-~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|++.+|++ ++|+.|+|||+|||+.+.......|+.+|+.+|.+|+.
T Consensus 301 ~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 351 (488)
T 3dgz_A 301 TNPKNQKIIVDAQ--EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG 351 (488)
T ss_dssp BCSSSCCBCCCTT--SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred ecCCCCeEeECCC--CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcC
Confidence 88 7899999987 78999999999999754333333799999999999974
No 67
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=99.96 E-value=5.5e-29 Score=260.33 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=189.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCCcee-------------------------ccc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGLVR-------------------------SGV 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~ggl~~-------------------------~g~ 64 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+ .+||... +|+
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~ 108 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYG--KKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGW 108 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCc
Confidence 3579999999999999999999999 9999999864 4566321 122
Q ss_pred CCC---CCChHHHHH-----------HHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCC
Q 011535 65 APD---HPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 65 ~p~---~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~ 122 (483)
... ......+.. .+...++..+++++.+...- ..+...++ ...||+||||||+ .|..
T Consensus 109 ~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs-~p~~ 187 (519)
T 3qfa_A 109 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGE-RPRY 187 (519)
T ss_dssp CCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCE-EECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCC-CcCC
Confidence 111 112222211 12234556789888776542 12333333 3469999999998 6777
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+++||.+. .++++.++.. . . ...++++|||+|++|+|+|..|.+ .+
T Consensus 188 p~i~G~~~-~~~t~~~~~~----l------~---~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G 233 (519)
T 3qfa_A 188 LGIPGDKE-YCISSDDLFS----L------P---YCPGKTLVVGASYVALECAGFLAG--------------------IG 233 (519)
T ss_dssp CCCTTHHH-HCBCHHHHTT----C------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCccC-ceEcHHHHhh----h------h---hcCCeEEEECCcHHHHHHHHHHHH--------------------cC
Confidence 78888542 2333333221 0 0 135679999999999999999986 44
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|+ .+...+. +...+.+.+.|. ++|
T Consensus 234 -~~Vtlv~~~-~~l~~~d----------------------------------~~~~~~~~~~l~-------------~~G 264 (519)
T 3qfa_A 234 -LDVTVMVRS-ILLRGFD----------------------------------QDMANKIGEHME-------------EHG 264 (519)
T ss_dssp -CCEEEEESS-CSSTTSC----------------------------------HHHHHHHHHHHH-------------HTT
T ss_pred -CeEEEEecc-cccccCC----------------------------------HHHHHHHHHHHH-------------HCC
Confidence 479999885 3322221 111222223333 679
Q ss_pred EEEeecCCcceeecccC-CCCceEEEEEeeeeeeCCCCCceeeccCC-ceEEEecCeEEEeeecCCCCCCCCCccCCCCc
Q 011535 283 LHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALKGGGPGKQYAVGTG-EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~-~~g~v~~v~~~~~~l~~~~~g~~~~~~~g-~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~ 360 (483)
|+++++..+.++....+ +++.+ .+.+.. .++ +..++++|.||+|+|++|+.. .+. .+..|+
T Consensus 265 V~v~~~~~v~~v~~~~~~~~~~~-~v~~~~--------------~~g~~~~~~~~D~vi~a~G~~p~~~-~l~-l~~~gl 327 (519)
T 3qfa_A 265 IKFIRQFVPIKVEQIEAGTPGRL-RVVAQS--------------TNSEEIIEGEYNTVMLAIGRDACTR-KIG-LETVGV 327 (519)
T ss_dssp CEEEESEEEEEEEEEECCTTCEE-EEEEEE--------------SSSSCEEEEEESEEEECSCEEESCS-SSC-STTTTC
T ss_pred CEEEeCCeEEEEEEccCCCCceE-EEEEEE--------------CCCcEEEEEECCEEEEecCCcccCC-CCC-hhhcCc
Confidence 99999887777752110 01222 222221 022 234789999999999999862 111 366788
Q ss_pred ccC-CCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 361 VPN-IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 361 ~~~-~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.++ ++|+|.+|++ ++|+.|+|||+|||+.+.......|+.+|+.+|.+|+.
T Consensus 328 ~~~~~~G~I~Vd~~--~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 328 KINEKTGKIPVTDE--EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp CCCTTTCCBCCCTT--SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred EEcCCCCeEeeCCC--CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 888 5899999988 78999999999999854333434799999999999974
No 68
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.96 E-value=6.3e-29 Score=256.12 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=190.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee----------------------------cccCCC--C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR----------------------------SGVAPD--H 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~----------------------------~g~~p~--~ 68 (483)
.++|+||||||||+++|..|++.+ .+|+|||+ +.+||.+. +|+... .
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR 81 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence 479999999999999999999998 99999999 55665421 232111 1
Q ss_pred CChHHHHH-----------HHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCC-CCCCCCCCe
Q 011535 69 PETKIVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGV 133 (483)
Q Consensus 69 ~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~-ipg~~~~~v 133 (483)
.....+.. .+...++..+++++.++.+. +.+.+.+....||+||||||+ .|+.++ +|. +. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs-~p~~~~~~~~-~~-~v 158 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGS-SSVELPMLPL-GG-PV 158 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCE-EECCBTTBCC-BT-TE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCC-CCCCCCCCCc-cC-cE
Confidence 11222221 23355667889999887642 235554444579999999999 455443 442 22 45
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+
T Consensus 159 ~~~~~~~~~----------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~ 204 (458)
T 1lvl_A 159 ISSTEALAP----------K---ALPQHLVVVGGGYIGLELGIAYRK--------------------LG-AQVSVVEARE 204 (458)
T ss_dssp ECHHHHTCC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEECSSS
T ss_pred ecHHHHhhh----------h---ccCCeEEEECcCHHHHHHHHHHHH--------------------CC-CeEEEEEcCC
Confidence 554443210 0 146899999999999999999885 34 4799999987
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +...+.+.+.+. ++||+++++..+.+
T Consensus 205 ~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~ 237 (458)
T 1lvl_A 205 RILPTYD----------------------------------SELTAPVAESLK-------------KLGIALHLGHSVEG 237 (458)
T ss_dssp SSSTTSC----------------------------------HHHHHHHHHHHH-------------HHTCEEETTCEEEE
T ss_pred ccccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEEE
Confidence 6432221 111222223332 56899999999999
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . +. +.+.. .+|+..++++|.||+|+|++|+.. .+ ..+..|+.++++ ++.+|++
T Consensus 238 i~----~-~~---v~v~~--------------~~G~~~~i~~D~vv~a~G~~p~~~-~l-~~~~~g~~~~~~-~i~vd~~ 292 (458)
T 1lvl_A 238 YE----N-GC---LLAND--------------GKGGQLRLEADRVLVAVGRRPRTK-GF-NLECLDLKMNGA-AIAIDER 292 (458)
T ss_dssp EE----T-TE---EEEEC--------------SSSCCCEECCSCEEECCCEEECCS-SS-SGGGSCCCEETT-EECCCTT
T ss_pred EE----e-CC---EEEEE--------------CCCceEEEECCEEEECcCCCcCCC-CC-CcHhcCCcccCC-EEeECCC
Confidence 86 2 22 22221 023334899999999999999862 11 235667877777 8999987
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+.++.... .|..||+.+|.+|..
T Consensus 293 --~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 293 --CQTSMHNVWAIGDVAGEPMLAH-RAMAQGEMVAEIIAG 329 (458)
T ss_dssp --CBCSSTTEEECGGGGCSSCCHH-HHHHHHHHHHHHHTT
T ss_pred --CcCCCCCEEEeeccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 7799999999999988766555 799999999999974
No 69
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.96 E-value=1.1e-29 Score=254.20 Aligned_cols=277 Identities=18% Similarity=0.196 Sum_probs=185.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC---ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG---LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg---l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..+|+||||||||++||..|++.+ +|+|||+++.++. ++.. ...+....+++.....++++..+++++.++.+
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~~~~~~l~~-~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v 83 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSH-YIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA 83 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCCCCSTTHHH-HHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCccccchhHH-HHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence 469999999999999999998875 9999999876421 1111 11222233333333344556678999988543
Q ss_pred c------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 96 G------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 96 ~------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
. ..+..+.....||+||||||+ .|+.+++|| .+++++...+....... ..+..+++++|||+|+
T Consensus 84 ~~id~~~~~V~~~g~~~~~d~lViATGs-~p~~p~i~G--~~~v~~~~~~~~~~~l~-------~~~~~~~~vvViGgG~ 153 (367)
T 1xhc_A 84 KLIDRGRKVVITEKGEVPYDTLVLATGA-RAREPQIKG--KEYLLTLRTIFDADRIK-------ESIENSGEAIIIGGGF 153 (367)
T ss_dssp EEEETTTTEEEESSCEEECSEEEECCCE-EECCCCSBT--GGGEECCCSHHHHHHHH-------HHHHHHSEEEEEECSH
T ss_pred EEEECCCCEEEECCcEEECCEEEECCCC-CCCCCCCCC--cCCEEEEcCHHHHHHHH-------HHhhcCCcEEEECCCH
Confidence 2 123322223579999999998 677778888 34566543332111000 0001248999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.|.+.+.. +.
T Consensus 154 ~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~-~~----------------------------- 182 (367)
T 1xhc_A 154 IGLELAGNLAE--------------------AG-YHVKLIHRGAMFLG-LD----------------------------- 182 (367)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEECSSSCCTT-CC-----------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CEEEEEeCCCeecc-CC-----------------------------
Confidence 99999999986 44 47999998875432 21
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
+...+.+.+.+. ++||+++++..+.++. . + .+++ .+
T Consensus 183 -----~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~--~----~v~~------------------~~ 218 (367)
T 1xhc_A 183 -----EELSNMIKDMLE-------------ETGVKFFLNSELLEAN--E--E----GVLT------------------NS 218 (367)
T ss_dssp -----HHHHHHHHHHHH-------------HTTEEEECSCCEEEEC--S--S----EEEE------------------TT
T ss_pred -----HHHHHHHHHHHH-------------HCCCEEEcCCEEEEEE--e--e----EEEE------------------CC
Confidence 111222223333 6799999999888885 2 1 2322 12
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC--C-cchhHhhHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG--P-TGIIATNLYCAEE 406 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g--~-~~~~~~a~~~g~~ 406 (483)
++ +++|.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+.. + .+....|+.||+.
T Consensus 219 g~-i~~D~vi~a~G~~p~~----~ll~~~gl~~~-~g-i~Vd~~--~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~ 289 (367)
T 1xhc_A 219 GF-IEGKVKICAIGIVPNV----DLARRSGIHTG-RG-ILIDDN--FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARV 289 (367)
T ss_dssp EE-EECSCEEEECCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHH
T ss_pred CE-EEcCEEEECcCCCcCH----HHHHhCCCCCC-CC-EEECCC--cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHH
Confidence 24 9999999999999986 35566677775 45 888887 78999999999999742 2 2344579999999
Q ss_pred HHHHHHH
Q 011535 407 TVASISE 413 (483)
Q Consensus 407 ~a~~I~~ 413 (483)
+|.+|..
T Consensus 290 aa~~i~g 296 (367)
T 1xhc_A 290 LADILKG 296 (367)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9999964
No 70
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=99.96 E-value=7.1e-29 Score=257.60 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=191.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC---C------CCCCce-e------------------------cc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---P------TPFGLV-R------------------------SG 63 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~---~------~~ggl~-~------------------------~g 63 (483)
..++|+||||||||+++|..|++.+ .+|+|||+. + ..||.+ . +|
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g 85 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNG--ARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYG 85 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999 999999942 1 245532 1 22
Q ss_pred cCCC---CCChHHHHH-----------HHHHHHhcCCeEEEeCeEEce-----EEEecce--eeccCEEEEccCCCCCCC
Q 011535 64 VAPD---HPETKIVIN-----------QFSRVVQHERCSFFGNVTLGS-----SVSLSEL--RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 64 ~~p~---~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~~-----~~~~~~~--~~~yd~vvlAtG~~~~~~ 122 (483)
+... ......+.. .+...+...+++++.+...-. .+...++ ...||+||||||+ .|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs-~p~~ 164 (483)
T 3dgh_A 86 WNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGG-RPRY 164 (483)
T ss_dssp BCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCE-EECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCC-CcCC
Confidence 2111 112222221 122334556888887755421 2333333 3579999999998 6777
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|++||.+.. ++++.++.. . . ..+++++|||+|++|+|+|..|.+ .+
T Consensus 165 p~i~G~~~~-~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g 210 (483)
T 3dgh_A 165 PDIPGAVEY-GITSDDLFS----L------D---REPGKTLVVGAGYIGLECAGFLKG--------------------LG 210 (483)
T ss_dssp CSSTTHHHH-CBCHHHHTT----C------S---SCCCEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCcccc-cCcHHHHhh----h------h---hcCCcEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 788886422 233333221 0 0 146799999999999999999986 34
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|.. ....+. +...+.+.+.+. ++|
T Consensus 211 -~~Vtlv~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~G 241 (483)
T 3dgh_A 211 -YEPTVMVRSI-VLRGFD----------------------------------QQMAELVAASME-------------ERG 241 (483)
T ss_dssp -CEEEEEESSC-SSTTSC----------------------------------HHHHHHHHHHHH-------------HTT
T ss_pred -CEEEEEeCCC-CCcccC----------------------------------HHHHHHHHHHHH-------------hCC
Confidence 5799998853 221111 111222223333 678
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~ 362 (483)
|+++++..+.++. .++++.+ .+++.+ + .+++..++++|.||+|+|++|+.- .+ ..+..|+..
T Consensus 242 v~i~~~~~v~~i~--~~~~~~~-~v~~~~--------~-----~~~~~~~~~~D~vi~a~G~~p~~~-~l-~l~~~gl~~ 303 (483)
T 3dgh_A 242 IPFLRKTVPLSVE--KQDDGKL-LVKYKN--------V-----ETGEESEDVYDTVLWAIGRKGLVD-DL-NLPNAGVTV 303 (483)
T ss_dssp CCEEETEEEEEEE--ECTTSCE-EEEEEE--------T-----TTCCEEEEEESEEEECSCEEECCG-GG-TGGGTTCCC
T ss_pred CEEEeCCEEEEEE--EcCCCcE-EEEEec--------C-----CCCceeEEEcCEEEECcccccCcC-cC-CchhcCccc
Confidence 9999999999987 3123333 354443 1 134456899999999999999761 11 125678888
Q ss_pred CCCCeeeecCCCCCCcccCceeeeccCCCC-CcchhHhhHHHHHHHHHHHHH
Q 011535 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 363 ~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ |++.+|++ ++|+.|+|||+|||+.+ +.... .|..+|+.+|.+|+.
T Consensus 304 ~~-G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~-~A~~~g~~aa~~i~g 351 (483)
T 3dgh_A 304 QK-DKIPVDSQ--EATNVANIYAVGDIIYGKPELTP-VAVLAGRLLARRLYG 351 (483)
T ss_dssp BT-TBBCCCTT--CBCSSTTEEECSTTBTTSCCCHH-HHHHHHHHHHHHHHS
T ss_pred cC-CEEEECcC--CccCCCCEEEEEcccCCCCccHH-HHHHHHHHHHHHHcC
Confidence 88 99999988 78999999999999854 54444 799999999999974
No 71
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=99.96 E-value=9.5e-30 Score=258.37 Aligned_cols=278 Identities=18% Similarity=0.240 Sum_probs=190.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHH-------HHHHHHhcCCeEEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN-------QFSRVVQHERCSFF 90 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~-------~~~~~~~~~~v~~~ 90 (483)
..++|+|||||+||+++|..|++.+++.+|+|||+.+.+.. .. |. ..+.+.. .+. .+.+.+++++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~----~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~~ 77 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY----DR-PP--LSKDFMAHGDAEKIRLD-CKRAPEVEWL 77 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB----CS-GG--GGTHHHHHCCGGGSBCC-CTTSCSCEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc----cC-CC--CCHHHhCCCchhhhhHH-HHHHCCCEEE
Confidence 45799999999999999999999985557999999876421 10 10 0011110 011 3456789998
Q ss_pred eCeEE-c-----eEEEecce-eeccCEEEEccCCCCCCCCCC-CCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 91 GNVTL-G-----SSVSLSEL-RQLYHVVVLAYGAESDRALGI-PGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 91 ~~~~v-~-----~~~~~~~~-~~~yd~vvlAtG~~~~~~~~i-pg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.++.+ . ..+.+.++ ...||+||+|||+ .++.+++ ||.+ +++++......... +...+..+++|
T Consensus 78 ~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~i~~G~~-~~v~~~~~~~~~~~-------l~~~~~~~~~v 148 (408)
T 2gqw_A 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGA-APRALPTLQGAT-MPVHTLRTLEDARR-------IQAGLRPQSRL 148 (408)
T ss_dssp ETCCEEEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTCS-SCEEECCSHHHHHH-------HHTTCCTTCEE
T ss_pred cCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCccCCCC-CcEEEECCHHHHHH-------HHHHhhcCCeE
Confidence 88643 2 23555444 3579999999999 5777788 8877 67765433221100 00012247899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ .+|+++.+.+.+.......
T Consensus 149 vViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~-------------------- 187 (408)
T 2gqw_A 149 LIVGGGVIGLELAATART--------------------AG-VHVSLVETQPRLMSRAAPA-------------------- 187 (408)
T ss_dssp EEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTSCH--------------------
T ss_pred EEECCCHHHHHHHHHHHh--------------------CC-CEEEEEEeCCcccccccCH--------------------
Confidence 999999999999999986 34 4799999987643211111
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.....+.+.+. +.||+++++..+.++. . + .+++.
T Consensus 188 -------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~---~---~v~~~------------ 221 (408)
T 2gqw_A 188 -------------TLADFVARYHA-------------AQGVDLRFERSVTGSV--D---G---VVLLD------------ 221 (408)
T ss_dssp -------------HHHHHHHHHHH-------------HTTCEEEESCCEEEEE--T---T---EEEET------------
T ss_pred -------------HHHHHHHHHHH-------------HcCcEEEeCCEEEEEE--C---C---EEEEC------------
Confidence 11222223332 6789999999998885 2 2 33331
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---c----
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---G---- 395 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---~---- 395 (483)
+| ++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+. |
T Consensus 222 ----~g--~~i~~D~vi~a~G~~p~~----~l~~~~gl~~~-~g-i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~ 287 (408)
T 2gqw_A 222 ----DG--TRIAADMVVVGIGVLAND----ALARAAGLACD-DG-IFVDAY--GRTTCPDVYALGDVTRQRNPLSGRFER 287 (408)
T ss_dssp ----TS--CEEECSEEEECSCEEECC----HHHHHHTCCBS-SS-EECCTT--CBCSSTTEEECGGGEEEEETTTTEEEC
T ss_pred ----CC--CEEEcCEEEECcCCCccH----HHHHhCCCCCC-CC-EEECCC--CccCCCCEEEEEEEEEecCccCCceee
Confidence 22 379999999999999986 35555677776 56 889887 7799999999999986542 1
Q ss_pred --hhHhhHHHHHHHHHHHHH
Q 011535 396 --IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 --~~~~a~~~g~~~a~~I~~ 413 (483)
....|+.||+.+|.+|..
T Consensus 288 ~~~~~~A~~~g~~aa~~i~g 307 (408)
T 2gqw_A 288 IETWSNAQNQGIAVARHLVD 307 (408)
T ss_dssp CCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHhcC
Confidence 234799999999999974
No 72
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.96 E-value=1.8e-30 Score=265.54 Aligned_cols=309 Identities=13% Similarity=0.102 Sum_probs=190.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-CceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-gl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~- 96 (483)
.|+|||||||+||++||.+|++.+++++|+|||++++.+ ....+.++.+....+++...+.+++++.+++|+.+.+..
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I 81 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI 81 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence 368999999999999999999988889999999988632 222222223334444554455667777899999887653
Q ss_pred ----eEEEeccee-eccCEEEEccCCCCCCCCCCCCCC--C---CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 97 ----SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED--L---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 97 ----~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~--~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
+.++++++. ..||+||||||+. . .+++||.+ . ..+.++..+...+.. +...+.++|+|
T Consensus 82 d~~~~~V~~~~g~~i~YD~LViAtG~~-~-~~~i~G~~e~~~~~~~~~~a~~~~~~l~~----------~~~~~~~vv~g 149 (430)
T 3hyw_A 82 DPDANTVTTQSGKKIEYDYLVIATGPK-L-VFGAEGQEENSTSICTAEHALETQKKLQE----------LYANPGPVVIG 149 (430)
T ss_dssp ETTTTEEEETTCCEEECSEEEECCCCE-E-ECCSBTHHHHSCCCSSHHHHHHHHHHHHH----------HHHSCCCEEEE
T ss_pred ECCCCEEEECCCCEEECCEEEEeCCCC-c-cCCccCcccCcCCcccHHHHHHHHHHHHh----------hccCCceEEEe
Confidence 346676664 5799999999984 3 34678753 1 111122221111110 11233455555
Q ss_pred CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc---cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccccc
Q 011535 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (483)
Q Consensus 167 ~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~---~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~ 243 (483)
+| .|++++..+.+ +.......+++.+. -+|+++...+.+ ..|.
T Consensus 150 g~-~gve~~~~~~e---------~a~~~~~~l~~~g~~~~v~v~~~~~~~~l-~~~~----------------------- 195 (430)
T 3hyw_A 150 AI-PGVSCFGPAYE---------FALMLHYELKKRGIRYKVPMTFITSEPYL-GHFG----------------------- 195 (430)
T ss_dssp EC-TTCCCCHHHHH---------HHHHHHHHHHHTTCGGGCCEEEECSSSST-TCTT-----------------------
T ss_pred CC-CcEEEhHHHHH---------HHHHHHHHHHHhcccccceeeeecccchh-hhcc-----------------------
Confidence 54 34444433321 11111122333332 246665544321 1111
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCcee
Q 011535 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (483)
Q Consensus 244 ~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~ 323 (483)
+. ..+...+.+.+.+. ++||+++++..+.++. . + .+.+..
T Consensus 196 --~~-----~~~~~~~~l~~~l~-------------~~GV~~~~~~~v~~v~--~---~---~~~~~~------------ 235 (430)
T 3hyw_A 196 --VG-----GIGASKRLVEDLFA-------------ERNIDWIANVAVKAIE--P---D---KVIYED------------ 235 (430)
T ss_dssp --TT-----CSTTHHHHHHHHHH-------------HTTCEEECSCEEEEEC--S---S---EEEEEC------------
T ss_pred --ch-----hhHHHHHHHHHHHH-------------hCCeEEEeCceEEEEe--C---C---ceEEEe------------
Confidence 00 00111222223333 6799999999999986 2 2 233332
Q ss_pred eccCCceEEEecCeEEEeeecCCCCCCCCCccCCC--CcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--------
Q 011535 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHK--GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------- 393 (483)
Q Consensus 324 ~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~--g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-------- 393 (483)
.+|+.+++++|++||++|++|++ +.... .+..+.+|++.+|+++ +.+++|+|||+|||+.-|
T Consensus 236 --~~g~~~~i~~d~vi~~~G~~~~~-----~~~~~~~~l~~~~~g~i~vd~~l-q~t~~~~IfAiGD~a~~p~~~~~~~~ 307 (430)
T 3hyw_A 236 --LNGNTHEVPAKFTMFMPSFQGPE-----VVASAGDKVANPANKMVIVNRCF-QNPTYKNIFGVGVVTAIPPIEKTPIP 307 (430)
T ss_dssp --TTSCEEEEECSEEEEECEEECCH-----HHHTTCTTTBCTTTCCBCCCTTS-BCSSSTTEEECSTTBCCCCSSCCSSC
T ss_pred --eCCCceEeecceEEEeccCCCch-----HHHhcccccccCCceEEEecccc-cCCCCCCEEEeccEEecCCcccCcCc
Confidence 24666799999999999999975 22222 2344557889999985 569999999999998532
Q ss_pred ----cchhHhhHHHHHHHHHHHHHHHhcCcCCC
Q 011535 394 ----TGIIATNLYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 394 ----~~~~~~a~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
.... .|.+||+.+|+||++.+.+.+.+.
T Consensus 308 ~~~pk~a~-~A~~qg~~~A~Ni~~~l~g~~~~~ 339 (430)
T 3hyw_A 308 TGVPKTGM-MIEQMAMAVAHNIVNDIRNNPDKY 339 (430)
T ss_dssp CCCCCCHH-HHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CccchHHH-HHHHHHHHHHHHHHHHhcCCCCCc
Confidence 2223 599999999999999999886543
No 73
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=99.96 E-value=7.5e-28 Score=248.23 Aligned_cols=265 Identities=14% Similarity=0.099 Sum_probs=181.8
Q ss_pred CeEEEECccHHHHHHHHHHHh---cCCCCe---EEEEecCCCCCCceeccc----C------------------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQ---VDIIDRLPTPFGLVRSGV----A------------------------ 65 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~---~~~~~~---v~lie~~~~~ggl~~~g~----~------------------------ 65 (483)
++|+||||||||+++|..|++ .+ .+ |+|||+.+.+||.+.+.. .
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~ 80 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE 80 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence 699999999999999999999 88 88 999999998888766420 0
Q ss_pred --------------CCCCChHHHHHHHHHHHhcCCeE--EEeCeEEce----------EEEecc------eeeccCEEEE
Q 011535 66 --------------PDHPETKIVINQFSRVVQHERCS--FFGNVTLGS----------SVSLSE------LRQLYHVVVL 113 (483)
Q Consensus 66 --------------p~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~----------~~~~~~------~~~~yd~vvl 113 (483)
+.++...++..++.+.+++.++. +++++.|.. .+++.+ ....||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVv 160 (464)
T 2xve_A 81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC 160 (464)
T ss_dssp BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEE
Confidence 12233456777788887777776 766765421 344433 2346999999
Q ss_pred ccCC-CCCCCCCCCCCCC-CC-eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCcccccccc
Q 011535 114 AYGA-ESDRALGIPGEDL-IG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190 (483)
Q Consensus 114 AtG~-~~~~~~~ipg~~~-~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di 190 (483)
|||. ..|+.+.+||.+. ++ ++++.++... ... .+++|+|||+|++|+|+|..|++
T Consensus 161 AtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~-----------~~~-~~k~VvVVG~G~sg~eiA~~l~~---------- 218 (464)
T 2xve_A 161 CTGHFSTPYVPEFEGFEKFGGRILHAHDFRDA-----------LEF-KDKTVLLVGSSYSAEDIGSQCYK---------- 218 (464)
T ss_dssp CCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCG-----------GGG-TTSEEEEECCSTTHHHHHHHHHH----------
T ss_pred CCCCCCCCccCCCCCcccCCceEEehhhhCCH-----------hHc-CCCEEEEEcCCCCHHHHHHHHHH----------
Confidence 9994 2677788998752 33 4555543311 012 57999999999999999999986
Q ss_pred chHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHH
Q 011535 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAA 270 (483)
Q Consensus 191 ~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~ 270 (483)
. .++|+++.|++..... +
T Consensus 219 ----------~-g~~V~li~~~~~~~~~---------------------------~------------------------ 236 (464)
T 2xve_A 219 ----------Y-GAKKLISCYRTAPMGY---------------------------K------------------------ 236 (464)
T ss_dssp ----------T-TCSEEEEECSSCCCCC---------------------------C------------------------
T ss_pred ----------h-CCeEEEEEECCCCCCC---------------------------C------------------------
Confidence 3 3579999988643100 0
Q ss_pred hcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC
Q 011535 271 SASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN 350 (483)
Q Consensus 271 ~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~ 350 (483)
...+|.++ ..+.++. + + +|.+. +| +++++|.||+|||++|+.
T Consensus 237 --------~~~~V~~~--~~V~~i~--~--~----~V~~~----------------dG--~~i~~D~Vi~atG~~p~~-- 278 (464)
T 2xve_A 237 --------WPENWDER--PNLVRVD--T--E----NAYFA----------------DG--SSEKVDAIILCTGYIHHF-- 278 (464)
T ss_dssp --------CCTTEEEC--SCEEEEC--S--S----EEEET----------------TS--CEEECSEEEECCCBCCCC--
T ss_pred --------CCCceEEc--CCeEEEe--C--C----EEEEC----------------CC--CEEeCCEEEECCCCCCCC--
Confidence 02356665 5566664 2 2 23332 23 268999999999999975
Q ss_pred CCCccCC-CCcccCCCCeee-ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 351 GLPFDNH-KGIVPNIRGRVL-KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 351 ~l~~~~~-~g~~~~~~G~v~-v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|... .++.++++|++. ..... +.++.|+|||+||+..++. ...+..||+.+|.+|..
T Consensus 279 --~~l~~~~gl~~~~~~~v~~~~~~~-~~t~~p~i~aiGd~~~~~~--~~~a~~qa~~~a~~l~G 338 (464)
T 2xve_A 279 --PFLNDDLRLVTNNRLWPLNLYKGV-VWEDNPKFFYIGMQDQWYS--FNMFDAQAWYARDVIMG 338 (464)
T ss_dssp --TTBCTTTCCCCCSSSCCSSEETTT-EESSSTTEEECSCSCCSSC--HHHHHHHHHHHHHHHTT
T ss_pred --CCcCcccccccCCCcccccccceE-ecCCCCCEEEEeCcccccc--hHHHHHHHHHHHHHHcC
Confidence 34443 577777666662 11222 4588999999999976542 33578888888887753
No 74
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=99.96 E-value=5.3e-29 Score=255.25 Aligned_cols=312 Identities=15% Similarity=0.121 Sum_probs=201.9
Q ss_pred CCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+++|+|||||+||+++|..|++ .+ ++|+|||+.+.. +......+..+....+++...+.++++..+++++.+..
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g--~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v 81 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSG--HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSA 81 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGG--SEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCc--CEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEE
Confidence 4799999999999999999999 56 999999998853 21122222234455666666677788888999987755
Q ss_pred Ece-----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCCC--CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 95 LGS-----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 95 v~~-----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
... .+.++++. ..||+||+|||+ .+..+.+||.+.. ..++...+......... +. .+...++++|||
T Consensus 82 ~~id~~~~~V~~~~g~~i~~d~lviAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~---~~-~~~~~~~~vVVG 156 (437)
T 3sx6_A 82 EQIDAEAQNITLADGNTVHYDYLMIATGP-KLAFENVPGSDPHEGPVQSICTVDHAERAFAE---YQ-ALLREPGPIVIG 156 (437)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCC-EECGGGSTTCSTTTSSEECCSSHHHHHHHHHH---HH-HHHHSCCCEEEE
T ss_pred EEEEcCCCEEEECCCCEEECCEEEECCCC-CcCcccCCCCCcccCcceecccccHHHHHHHH---HH-HHHhCCCEEEEE
Confidence 432 35555554 579999999999 5677788887632 22221111110000000 00 000134578999
Q ss_pred CCchH------HHHHHHHhcCCccccccccchHHHHHHhcCCcc---E-EEEEeecCcccccCCHHHHHHHhcCCCeeEE
Q 011535 167 QGNVA------LDVARILLRPTEELATTDIASYAWTALEGSSIR---K-VYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (483)
Q Consensus 167 ~G~~g------~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~---~-V~li~r~~~~~~~f~~~el~~~~~~~~~~~~ 236 (483)
+|+.| +|+|..++. .+++.+.+ + |+++.+.+.+.. +.
T Consensus 157 gG~~~g~~G~~~E~a~~la~----------------~l~~~g~~~~~~~Vtlv~~~~~~~~-~~---------------- 203 (437)
T 3sx6_A 157 AMAGASCFGPAYEYAMIVAS----------------DLKKRGMRDKIPSFTFITSEPYIGH-LG---------------- 203 (437)
T ss_dssp ECTTCCCCHHHHHHHHHHHH----------------HHHHTTCGGGCSCEEEEESSSSTTC-TT----------------
T ss_pred cCCCCCcCcHHHHHHHHHHH----------------HHHHcCCcccCcEEEEEcCCccccc-cc----------------
Confidence 96654 999977653 23334543 2 999998864311 00
Q ss_pred eccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC
Q 011535 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (483)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~ 316 (483)
++.. +.....+.+.+. ++||+++++..+.++. . + .+.+....
T Consensus 204 --------l~~~------~~~~~~~~~~l~-------------~~gI~~~~~~~v~~v~--~--~----~v~~~~~~--- 245 (437)
T 3sx6_A 204 --------IQGV------GDSKGILTKGLK-------------EEGIEAYTNCKVTKVE--D--N----KMYVTQVD--- 245 (437)
T ss_dssp --------TTCC------TTHHHHHHHHHH-------------HTTCEEECSEEEEEEE--T--T----EEEEEEEC---
T ss_pred --------cCcc------hHHHHHHHHHHH-------------HCCCEEEcCCEEEEEE--C--C----eEEEEecc---
Confidence 0000 111222333333 6799999999999997 3 2 23343311
Q ss_pred CCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCc-ccCceeeeccCCCC---
Q 011535 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWLKRG--- 392 (483)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t-~~p~vya~Gd~~~g--- 392 (483)
.+|+ ++++.++++|++++++|++++. ++.+..++ .+++|++.+|++ +++ ++|+|||+|||+..
T Consensus 246 -~~g~-----~~~~~~i~~D~vv~~~g~~~~~----~~~~~~gl-~~~~G~i~Vd~~--l~t~~~~~Ifa~GD~~~~~~~ 312 (437)
T 3sx6_A 246 -EKGE-----TIKEMVLPVKFGMMIPAFKGVP----AVAGVEGL-CNPGGFVLVDEH--QRSKKYANIFAAGIAIAIPPV 312 (437)
T ss_dssp -TTSC-----EEEEEEEECSEEEEECCEECCH----HHHTSTTT-BCTTSCBCBCTT--SBBSSCTTEEECGGGBCCCCS
T ss_pred -cCCc-----cccceEEEEeEEEEcCCCcCch----hhhccccc-cCCCCcEEeChh--ccCCCCCCEEEEEEEeccCCc
Confidence 0111 1225689999999999999865 23333566 678899999997 555 89999999999863
Q ss_pred ---------CcchhHhhHHHHHHHHHHHHHHHhcCcCCC
Q 011535 393 ---------PTGIIATNLYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 393 ---------~~~~~~~a~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
|.... .|+.||+.+|.||.++|.+.++..
T Consensus 313 ~~~~~~~~~pk~~~-~A~~qg~~aA~ni~~~l~g~~~~~ 350 (437)
T 3sx6_A 313 ETTPVPTGAPKTGY-MIESMVSAAVHNIKADLEGRKGEQ 350 (437)
T ss_dssp CCCSSCCCCCCCHH-HHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCcCCCCCCcHHH-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 23344 699999999999999999887665
No 75
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=99.96 E-value=1.1e-27 Score=239.80 Aligned_cols=289 Identities=12% Similarity=0.105 Sum_probs=185.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceec-----------------ccC---------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS-----------------GVA--------------- 65 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~-----------------g~~--------------- 65 (483)
.++|+|||||+||+++|..|++.+ . +|+|||+.+ +||.+.+ ++.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF 80 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence 468999999999999999999998 8 999999987 5553311 110
Q ss_pred -CCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 66 -PDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 66 -p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~--------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
..+....++..++.+.++..+++++.++.+. ..+...+....||+||+|||+. +. +.+|+ ..+++.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~-~~-p~ip~---~~~~~~ 155 (369)
T 3d1c_A 81 NEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDY-NF-PKKPF---KYGIHY 155 (369)
T ss_dssp CCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCST-TS-BCCCS---SSCEEG
T ss_pred cccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCC-Cc-cCCCC---Cceech
Confidence 0112334566777778888899998886442 1233444445799999999984 33 35665 234444
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
..+... ..+ .+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+.
T Consensus 156 ~~~~~~-----------~~~-~~~~vvVvG~G~~g~e~a~~l~~--------------------~g-~~V~lv~~~~~~~ 202 (369)
T 3d1c_A 156 SEIEDF-----------DNF-NKGQYVVIGGNESGFDAAYQLAK--------------------NG-SDIALYTSTTGLN 202 (369)
T ss_dssp GGCSCG-----------GGS-CSSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECC-----
T ss_pred hhcCCh-----------hhc-CCCEEEEECCCcCHHHHHHHHHh--------------------cC-CeEEEEecCCCCC
Confidence 332210 012 46899999999999999999986 33 5899999986542
Q ss_pred cc-CCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce-EEEeecCCccee
Q 011535 217 AA-CTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE-LHFVFFRKPDSF 294 (483)
Q Consensus 217 ~~-f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~-i~~~~~~~~~~v 294 (483)
.+ +. +.. ...+...+++.+.+. +.| |+++++..+.++
T Consensus 203 ~~~~d-------------------------~~~---~~~~~~~~~l~~~l~-------------~~g~v~~~~~~~v~~i 241 (369)
T 3d1c_A 203 DPDAD-------------------------PSV---RLSPYTRQRLGNVIK-------------QGARIEMNVHYTVKDI 241 (369)
T ss_dssp ------------------------------CTT---SCCHHHHHHHHHHHH-------------TTCCEEEECSCCEEEE
T ss_pred CCCCC-------------------------CCc---cCCHHHHHHHHHHHh-------------hCCcEEEecCcEEEEE
Confidence 11 00 000 000122233333333 566 999999999998
Q ss_pred ecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC
Q 011535 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 295 ~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
. . +++. ..+++. +|+ ....+|.||+|+|++|+. ++....++. +++|++.+++..
T Consensus 242 ~--~-~~~~-~~v~~~----------------~g~-~~~~~d~vi~a~G~~~~~----~~~~~~~~~-~~~g~i~v~~~~ 295 (369)
T 3d1c_A 242 D--F-NNGQ-YHISFD----------------SGQ-SVHTPHEPILATGFDATK----NPIVQQLFV-TTNQDIKLTTHD 295 (369)
T ss_dssp E--E-ETTE-EEEEES----------------SSC-CEEESSCCEECCCBCGGG----SHHHHHHSC-CTTSCCCBCTTS
T ss_pred E--e-cCCc-eEEEec----------------CCe-EeccCCceEEeeccCCcc----chhhhhhcc-CCCCCEEechhh
Confidence 5 2 1222 123221 232 233579999999999976 122222344 678989888766
Q ss_pred CCCcccCceeeeccCCCCCc---chhHhhHHHHHHHHHHHHHHHh
Q 011535 375 DSSQVENGLYVCGWLKRGPT---GIIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~---~~~~~a~~~g~~~a~~I~~~l~ 416 (483)
++|+.|+|||+|||+..+. ..+..+..+|..+|.+|...+.
T Consensus 296 -~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~ 339 (369)
T 3d1c_A 296 -ESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREG 339 (369)
T ss_dssp -BBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTT
T ss_pred -cccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccC
Confidence 7889999999999986432 2233466788999999887653
No 76
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=99.96 E-value=3.1e-28 Score=259.34 Aligned_cols=290 Identities=14% Similarity=0.205 Sum_probs=185.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-C-------CCCCce-ecccC----------------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-P-------TPFGLV-RSGVA---------------------- 65 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~-------~~ggl~-~~g~~---------------------- 65 (483)
...++|+||||||||++||..|++.+ .+|+|||+. + ..||.+ ..++.
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g--~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYG--AKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECCCccHHHHHHHHHhCC--CeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 45689999999999999999999999 999999973 3 245421 11111
Q ss_pred ---CC---CCChHHHHHHH-----------HHHHhcCCeEEEeCeEEc---eEEEe--cce---eeccCEEEEccCCCCC
Q 011535 66 ---PD---HPETKIVINQF-----------SRVVQHERCSFFGNVTLG---SSVSL--SEL---RQLYHVVVLAYGAESD 120 (483)
Q Consensus 66 ---p~---~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~v~---~~~~~--~~~---~~~yd~vvlAtG~~~~ 120 (483)
+. .....++..++ ...+...+++++.+.... ..+.+ .++ ...||+||||||+ .|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs-~p 261 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGE-RP 261 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCE-EE
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCC-CC
Confidence 11 11122222222 122345678887654321 12222 233 3469999999998 67
Q ss_pred CCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc
Q 011535 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (483)
Q Consensus 121 ~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~ 200 (483)
+.|++||.+.. ++++.++.. . . ..+++++|||+|++|+|+|..|.+
T Consensus 262 ~~p~i~G~~~~-~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~-------------------- 307 (598)
T 2x8g_A 262 KYPEIPGAVEY-GITSDDLFS----L------P---YFPGKTLVIGASYVALECAGFLAS-------------------- 307 (598)
T ss_dssp CCCSSTTHHHH-CEEHHHHTT----C------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------
T ss_pred CCCCCCCcccc-eEcHHHHhh----C------c---cCCCEEEEECCCHHHHHHHHHHHH--------------------
Confidence 77888885421 223332211 1 0 145789999999999999999986
Q ss_pred CCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCc
Q 011535 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ 280 (483)
Q Consensus 201 ~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~ 280 (483)
.+ .+|+++.|+ .+...+. +.....+.+.+. +
T Consensus 308 ~g-~~Vtlv~~~-~~l~~~d----------------------------------~~~~~~~~~~l~-------------~ 338 (598)
T 2x8g_A 308 LG-GDVTVMVRS-ILLRGFD----------------------------------QQMAEKVGDYME-------------N 338 (598)
T ss_dssp TT-CCEEEEESS-CSSTTSC----------------------------------HHHHHHHHHHHH-------------H
T ss_pred cC-CEEEEEECC-cCcCcCC----------------------------------HHHHHHHHHHHH-------------h
Confidence 44 469999987 3322121 111112223332 5
Q ss_pred ceEEEeecCCcceeecc------cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc
Q 011535 281 RELHFVFFRKPDSFLES------NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~------~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~ 354 (483)
.||+++++..+.++... .++.+.+. +.+.. .+|+..++++|.||+|+|++|+. .+
T Consensus 339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~--------------~~g~~~~~~~D~vi~a~G~~p~~----~~ 399 (598)
T 2x8g_A 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY--------------TDGKKFEEEFETVIFAVGREPQL----SK 399 (598)
T ss_dssp TTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE--------------TTSCEEEEEESEEEECSCEEECG----GG
T ss_pred CCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe--------------CCCcEEeccCCEEEEEeCCcccc----Cc
Confidence 68999998877777410 00112221 11110 13443456799999999999986 22
Q ss_pred --cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 355 --DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 355 --~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.++++|+|.+|++ ++|+.|+|||+|||+.+.......|+.+|+.+|.+|..
T Consensus 400 l~~~~~gl~~~~~G~i~vd~~--~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 458 (598)
T 2x8g_A 400 VLCETVGVKLDKNGRVVCTDD--EQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFA 458 (598)
T ss_dssp TBCGGGCCCBCTTSCBCCCTT--SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCceECCCCcEEeCCC--CcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhc
Confidence 2456788888999999988 77999999999999665333444799999999999975
No 77
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.95 E-value=9.5e-28 Score=267.14 Aligned_cols=286 Identities=16% Similarity=0.170 Sum_probs=202.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc---cCCCCCChHHHHHHHHHHHhc-CCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---VAPDHPETKIVINQFSRVVQH-ERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g---~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 94 (483)
.++|+||||||||++||..|++.+ ++|+|||+++.+||.+.+. ..++. ...++...+.+.+.. .+++++.++.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~GG~~~~~~k~~i~~~-~~~~~~~~~~~~l~~~~~v~~~~~~~ 204 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAGGTLLDTAGEQIDGM-DSSAWIEQVTSELAEAEETTHLQRTT 204 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGGGSSCCEETTE-EHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCCceeccCCccccCCC-CHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 468999999999999999999998 9999999999998876631 11222 234444444444444 4899988866
Q ss_pred EceE--------E-------Ee--------cce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC
Q 011535 95 LGSS--------V-------SL--------SEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK 150 (483)
Q Consensus 95 v~~~--------~-------~~--------~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~ 150 (483)
+... + .+ ... ...||+||||||+ .++++++||.+.++++++..+..+++...
T Consensus 205 V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs-~p~~~~ipG~~~~gv~~~~~~~~~l~~~~--- 280 (965)
T 2gag_A 205 VFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA-HERPIVFENNDRPGIMLAGAVRSYLNRYG--- 280 (965)
T ss_dssp EEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE-EECCCCCBTCCSTTEEEHHHHHHHHHTTC---
T ss_pred EEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC-ccCCCCCCCCCCCCEEEhHHHHHHHHhcC---
Confidence 5211 0 01 111 2469999999999 57888899999999998876554443221
Q ss_pred CCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcC
Q 011535 151 NLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI 230 (483)
Q Consensus 151 ~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~ 230 (483)
...+++|+|||+|++|+|+|..|.+ .+.+ |+++.+++.+..
T Consensus 281 -----~~~gk~vvViGgG~~g~E~A~~L~~--------------------~G~~-Vtvv~~~~~~~~------------- 321 (965)
T 2gag_A 281 -----VRAGARIAVATTNDSAYELVRELAA--------------------TGGV-VAVIDARSSISA------------- 321 (965)
T ss_dssp -----EESCSSEEEEESSTTHHHHHHHHGG--------------------GTCC-SEEEESCSSCCH-------------
T ss_pred -----CCCCCeEEEEcCCHHHHHHHHHHHH--------------------cCCc-EEEEECCCccch-------------
Confidence 1146899999999999999999986 4655 999998864310
Q ss_pred CCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEe
Q 011535 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~ 310 (483)
. .+.+. +.||+++++..+.++. +++++++..|++.
T Consensus 322 -------------------------~-----~~~l~-------------~~GV~v~~~~~v~~i~--~~~~~~v~~v~~~ 356 (965)
T 2gag_A 322 -------------------------A-----AAQAV-------------ADGVQVISGSVVVDTE--ADENGELSAIVVA 356 (965)
T ss_dssp -------------------------H-----HHHHH-------------HTTCCEEETEEEEEEE--ECTTSCEEEEEEE
T ss_pred -------------------------h-----HHHHH-------------hCCeEEEeCCEeEEEe--ccCCCCEEEEEEE
Confidence 0 12222 6799999999999997 4115677777775
Q ss_pred eeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC----CcccCceeee
Q 011535 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS----SQVENGLYVC 386 (483)
Q Consensus 311 ~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~----~t~~p~vya~ 386 (483)
+. +..+ .+|+.++++||+||+|+|++|+. .+.. ..+|.+.+|+.+ . .|+.|+|||+
T Consensus 357 ~~----~~~~-----~~G~~~~i~~D~Vv~a~G~~P~~----~l~~------~~~g~i~vd~~~-~~~v~~ts~p~IyAa 416 (965)
T 2gag_A 357 EL----DEAR-----ELGGTQRFEADVLAVAGGFNPVV----HLHS------QRQGKLDWDTTI-HAFVPADAVANQHLA 416 (965)
T ss_dssp EE----CTTC-----CEEEEEEEECSEEEEECCEEECC----HHHH------HTTCCEEEETTT-TEEEECSCCTTEEEC
T ss_pred ec----cccC-----CCCceEEEEcCEEEECCCcCcCh----HHHH------hCCCcEEEcCcc-cccccCCCCCCEEEE
Confidence 41 0000 01333689999999999999986 2322 124667777653 2 2789999999
Q ss_pred ccCCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 387 GWLKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 387 Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
|||+.. .+.. .|+.+|+.+|.+|..++..
T Consensus 417 GD~a~~-~~l~-~A~~~G~~aA~~i~~~lg~ 445 (965)
T 2gag_A 417 GAMTGR-LDTA-SALSTGAATGAAAATAAGF 445 (965)
T ss_dssp GGGGTC-CSHH-HHHHHHHHHHHHHHHHTTC
T ss_pred EecCCc-hhHH-HHHHHHHHHHHHHHHHcCC
Confidence 999754 4455 7999999999999998863
No 78
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=99.95 E-value=1e-27 Score=249.92 Aligned_cols=285 Identities=16% Similarity=0.170 Sum_probs=183.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCC-ceecccCCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFG-LVRSGVAPDH--------------------- 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~gg-l~~~g~~p~~--------------------- 68 (483)
.++|+||||||||+.||.++++.| .+|+|||+.. ..|| .++.|+.|..
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G--~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi 119 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHG--ARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTT--CCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence 379999999999999999999999 9999999753 2454 2334433310
Q ss_pred ----C--ChHHH-----------HHHHHHHHhcCCeEEEeCeEE---ceEEEe--c-----ceeeccCEEEEccCCCCCC
Q 011535 69 ----P--ETKIV-----------INQFSRVVQHERCSFFGNVTL---GSSVSL--S-----ELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 69 ----~--~~~~~-----------~~~~~~~~~~~~v~~~~~~~v---~~~~~~--~-----~~~~~yd~vvlAtG~~~~~ 121 (483)
. ....+ ...+...++..+++++.+... ...+.. . .....++++|||||+ .|.
T Consensus 120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs-~P~ 198 (542)
T 4b1b_A 120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC-RPH 198 (542)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE-EEC
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC-CCC
Confidence 0 01111 112233455667887766432 111221 1 112468999999999 566
Q ss_pred CCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC
Q 011535 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (483)
Q Consensus 122 ~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~ 201 (483)
.|+.++.+...++++.++..+ . ..+++++|||||++|+|+|..+.+ .
T Consensus 199 ~P~~~~~~~~~~~ts~~~l~l----------~---~lP~~lvIIGgG~IGlE~A~~~~~--------------------l 245 (542)
T 4b1b_A 199 IPDDVEGAKELSITSDDIFSL----------K---KDPGKTLVVGASYVALECSGFLNS--------------------L 245 (542)
T ss_dssp CCSSSBTHHHHCBCHHHHTTC----------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------H
T ss_pred CCCcccCCCccccCchhhhcc----------c---cCCceEEEECCCHHHHHHHHHHHh--------------------c
Confidence 554444333334555554311 0 146899999999999999999986 5
Q ss_pred CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011535 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (483)
Q Consensus 202 ~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~ 281 (483)
|. +||++.|.. ....+. . .+...+.+.|. ++
T Consensus 246 G~-~VTii~~~~-~L~~~D-----------------------------~-----ei~~~l~~~l~-------------~~ 276 (542)
T 4b1b_A 246 GY-DVTVAVRSI-VLRGFD-----------------------------Q-----QCAVKVKLYME-------------EQ 276 (542)
T ss_dssp TC-CEEEEESSC-SSTTSC-----------------------------H-----HHHHHHHHHHH-------------HT
T ss_pred CC-eEEEecccc-cccccc-----------------------------h-----hHHHHHHHHHH-------------hh
Confidence 65 589998753 322222 1 11122223333 67
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcc
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~ 361 (483)
||.++++..+.++. . .++.+ .+.+ .+..++++|.|++|+|.+||. .+|.+ +..|+.
T Consensus 277 gi~~~~~~~v~~~~--~-~~~~~-~v~~------------------~~~~~~~~D~vLvAvGR~Pnt-~~L~l-e~~gv~ 332 (542)
T 4b1b_A 277 GVMFKNGILPKKLT--K-MDDKI-LVEF------------------SDKTSELYDTVLYAIGRKGDI-DGLNL-ESLNMN 332 (542)
T ss_dssp TCEEEETCCEEEEE--E-ETTEE-EEEE------------------TTSCEEEESEEEECSCEEESC-GGGCG-GGTTCC
T ss_pred cceeecceEEEEEE--e-cCCeE-EEEE------------------cCCCeEEEEEEEEcccccCCc-cccCc-ccceee
Confidence 99999999998887 3 23322 1222 112367899999999999986 33322 456777
Q ss_pred cCCCCee-eecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 362 PNIRGRV-LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 362 ~~~~G~v-~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++..|.+ .+|++ ++|+.|+|||+|||+.+.......|..+|+.++++|...
T Consensus 333 ~~~~~~~i~vd~~--~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 333 VNKSNNKIIADHL--SCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp EETTTTEECCCTT--SBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred ecccCceEecccc--ccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcC
Confidence 7766555 66665 889999999999998663333337999999999998753
No 79
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.95 E-value=4.7e-28 Score=245.51 Aligned_cols=307 Identities=14% Similarity=0.044 Sum_probs=185.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.|||+||||||||++||.+|++.+++.+|+|||+++..+. .+.+.+..+....+++...+..+. ..+++|+.+.+...
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~-~~gv~~i~~~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLR-AHGIQVVHDSALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHH-HTTCEEECSCEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHH-HCCCEEEEeEEEEE
Confidence 5899999999999999999999888899999999876322 111112122223333332333333 35899998876643
Q ss_pred -----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCCC----CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 98 -----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLI----GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 98 -----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~----~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
.+.+.++. ..||+||||||+ .+..+++||.+.. .++.......... ....-..+..+ ..+|+++
T Consensus 81 d~~~~~v~~~~g~~i~yd~LviAtG~-~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~-~~~v~~~ 154 (401)
T 3vrd_B 81 DPDKKLVKTAGGAEFAYDRCVVAPGI-DLLYDKIEGYSEALAAKLPHAWKAGEQTAL----LRRQLESMDDG-GVVIIAP 154 (401)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCE-EECGGGSBTCCSGGGGTSCCCSSCSHHHHH----HHHHHHHSCTT-CEEEEEC
T ss_pred EccCcEEEecccceeecceeeeccCC-ccccCCccCchhhcccCccceeccHHHHHH----HHHHHHhcccC-CcEEEec
Confidence 35555543 579999999999 5667788886521 1111110000000 00000001123 3444443
Q ss_pred Cc-------hHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecc
Q 011535 168 GN-------VALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (483)
Q Consensus 168 G~-------~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~ 239 (483)
|. .+.|++.++.. .++..+ ..+|+++.+.+.+.. ..
T Consensus 155 ~~~~i~~~~a~~e~~~~~a~----------------~~~~~~~~~~v~i~~~~~~~~~---~~----------------- 198 (401)
T 3vrd_B 155 PAPPFRCPPGPYERASQIAH----------------YLKAHKSKSKVIILDNSQTFSK---QA----------------- 198 (401)
T ss_dssp CSSSCBCTTHHHHHHHHHHH----------------HHHHHCTTCEEEEECSSSSCTT---HH-----------------
T ss_pred CCccEEeehHHHHHHHHHHH----------------HHHhcCCCCEEEEEcccccccc---cc-----------------
Confidence 33 34455544432 121222 357888877654310 00
Q ss_pred ccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCC
Q 011535 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (483)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~ 319 (483)
.+.+.+.+.. .....+.+|+++++..+..+. . ++....++
T Consensus 199 --------------------~~~~~~~~~~-----~~~l~~~gi~v~~~~~v~~v~--~--~~~~~~v~----------- 238 (401)
T 3vrd_B 199 --------------------QFTKGWERLY-----GFGTENALIEWHPGPDAAVVK--T--DTEAMTVE----------- 238 (401)
T ss_dssp --------------------HHHHHHHHHS-----CTTSTTCSEEEECTTTTCEEE--E--ETTTTEEE-----------
T ss_pred --------------------cccHHHHHHH-----HHHHHhcCcEEEeCceEEEEE--e--cccceEEE-----------
Confidence 0011121111 234457899999999888886 3 22111222
Q ss_pred CceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---Ccch
Q 011535 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGI 396 (483)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~ 396 (483)
+++++++++|+|++++|.+|+. +....++ .+++|+|.||++..+.+++|||||+|||+.+ |...
T Consensus 239 -------~~~g~~i~~D~vi~~~g~~~~~-----~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a 305 (401)
T 3vrd_B 239 -------TSFGETFKAAVINLIPPQRAGK-----IAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSA 305 (401)
T ss_dssp -------ETTSCEEECSEEEECCCEEECH-----HHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSH
T ss_pred -------cCCCcEEEeeEEEEecCcCCch-----hHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCCCCchH
Confidence 2233489999999999999865 4456676 5788999999863167899999999999753 3334
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCcCCC
Q 011535 397 IATNLYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
. .|..||+.+|+||++.|.+.+..+
T Consensus 306 ~-~A~~qa~v~A~ni~~~l~G~~~~~ 330 (401)
T 3vrd_B 306 Y-SANSQAKVAAAAVVALLKGEEPGT 330 (401)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred H-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4 699999999999999999875443
No 80
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.95 E-value=1.1e-27 Score=258.77 Aligned_cols=283 Identities=15% Similarity=0.093 Sum_probs=203.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccCCCCCChHHHHHHHHHHHhcC-CeEEEeCeE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHE-RCSFFGNVT 94 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~p~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 94 (483)
...++|+|||||||||++|..|++++ ++|+|||+++.+||.+.+ ...|+.....++..++...+... +++++.++.
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 466 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESP 466 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCC
T ss_pred cccceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCe
Confidence 35689999999999999999999999 999999999999987654 34477777778888888888876 899998865
Q ss_pred EceEEEeccee-eccCEEEEccCCCC-------CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 95 LGSSVSLSELR-QLYHVVVLAYGAES-------DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 95 v~~~~~~~~~~-~~yd~vvlAtG~~~-------~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
+. ..+.. ..||+||+|||+.. +..+++||.+..+++++.++.. . ....+++|+|||
T Consensus 467 v~----~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~---~---------~~~~g~~VvViG 530 (690)
T 3k30_A 467 MT----GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFA---G---------RLPDGKKVVVYD 530 (690)
T ss_dssp CC----HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHT---T---------CCCSSSEEEEEE
T ss_pred ec----HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhC---C---------CCCCCCEEEEEc
Confidence 42 22222 46999999999841 3456788887777777665442 1 122578999999
Q ss_pred --CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccC
Q 011535 167 --QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244 (483)
Q Consensus 167 --~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~ 244 (483)
+|.+|+|+|..|.+ .+ .+|+++.+.+.+...+..
T Consensus 531 ~ggG~~g~e~A~~L~~--------------------~g-~~Vtlv~~~~~l~~~~~~----------------------- 566 (690)
T 3k30_A 531 DDHYYLGGVVAELLAQ--------------------KG-YEVSIVTPGAQVSSWTNN----------------------- 566 (690)
T ss_dssp CSCSSHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTGGGGG-----------------------
T ss_pred CCCCccHHHHHHHHHh--------------------CC-CeeEEEeccccccccccc-----------------------
Confidence 99999999999986 33 589999988654211100
Q ss_pred CCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceee
Q 011535 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYA 324 (483)
Q Consensus 245 ~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~ 324 (483)
......+.+.+. +.||++++++.+.++. . ++ +.+..
T Consensus 567 ----------~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~----~~v~~------------- 602 (690)
T 3k30_A 567 ----------TFEVNRIQRRLI-------------ENGVARVTDHAVVAVG--A--GG----VTVRD------------- 602 (690)
T ss_dssp ----------GTCHHHHHHHHH-------------HTTCEEEESEEEEEEE--T--TE----EEEEE-------------
T ss_pred ----------chhHHHHHHHHH-------------HCCCEEEcCcEEEEEE--C--Ce----EEEEE-------------
Confidence 001112223332 6799999999999997 3 22 22221
Q ss_pred ccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHH
Q 011535 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCA 404 (483)
Q Consensus 325 ~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g 404 (483)
+.++++++++||.||+|+|++|+. .+....+. .+. +|+.|+||++|||+. +..+. .|+.+|
T Consensus 603 ~~~~~~~~i~aD~VV~A~G~~p~~----~l~~~l~~----~~~---------~t~~~~VyaiGD~~~-~~~~~-~A~~~g 663 (690)
T 3k30_A 603 TYASIERELECDAVVMVTARLPRE----ELYLDLVA----RRD---------AGEIASVRGIGDAWA-PGTIA-AAVWSG 663 (690)
T ss_dssp TTTCCEEEEECSEEEEESCEEECC----HHHHHHHH----HHH---------HTSCSEEEECGGGTS-CBCHH-HHHHHH
T ss_pred ccCCeEEEEECCEEEECCCCCCCh----HHHHHHhh----hhc---------ccCCCCEEEEeCCCc-hhhHH-HHHHHH
Confidence 124566789999999999999976 22221111 111 267899999999976 44454 699999
Q ss_pred HHHHHHHHHHHhcCcCCCCC
Q 011535 405 EETVASISEDLEQGVLASSS 424 (483)
Q Consensus 405 ~~~a~~I~~~l~~~~~~~~~ 424 (483)
+.+|.+|...|.+.+..++.
T Consensus 664 ~~aa~~i~~~l~g~~~~p~~ 683 (690)
T 3k30_A 664 RRAAEEFDAVLPSNDEVPFR 683 (690)
T ss_dssp HHHHHHTTCCCCCTTSCSSC
T ss_pred HHHHHHHHhhccCCCCCCcC
Confidence 99999999998877655553
No 81
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.95 E-value=6e-28 Score=261.82 Aligned_cols=293 Identities=17% Similarity=0.126 Sum_probs=194.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccCCCCCChHHHHHHHHHHHhc------CCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQH------ERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~p~~~~~~~~~~~~~~~~~~------~~v~~ 89 (483)
...++|+||||||||++||..|++.+ ++|+|||+.+.+||.+.+ ...|+.........++...+.. .++++
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i 464 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA 464 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEE
Confidence 45689999999999999999999999 999999999999988765 3446555444444444333332 25666
Q ss_pred EeCeEEceEEEeccee-eccCEEEEccCCCC-------CCCCCCCCCC--CCCeeecceeeeeecCCCCCCCCCCCCCCC
Q 011535 90 FGNVTLGSSVSLSELR-QLYHVVVLAYGAES-------DRALGIPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (483)
Q Consensus 90 ~~~~~v~~~~~~~~~~-~~yd~vvlAtG~~~-------~~~~~ipg~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (483)
..+.. ++++++. ..||+||||||+.. +..+++||.+ .++++++.++.. .. ...+
T Consensus 465 ~~~~~----v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~---~~---------~~~g 528 (729)
T 1o94_A 465 LGQKP----MTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMD---GK---------KKIG 528 (729)
T ss_dssp CSCCC----CCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHH---CC---------SCCC
T ss_pred EeCeE----EehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhc---CC---------CCCC
Confidence 55432 2333332 46999999999842 4567899987 678888776542 11 1257
Q ss_pred CeEEEEc--CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 160 DTAVILG--QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 160 ~~vvVIG--~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
++|+||| +|++|+|+|..|.+ .+ .+|+++.|++ +.... .
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~--------------------~G-~~Vtlv~~~~-l~~~~---~-------------- 569 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLAT--------------------AG-HEVTIVSGVH-LANYM---H-------------- 569 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHH--------------------TT-CEEEEEESSC-TTHHH---H--------------
T ss_pred CeEEEEcCCCCchHHHHHHHHHH--------------------cC-CEEEEEeccc-ccccc---c--------------
Confidence 8999999 99999999999986 44 4899999987 32100 0
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG- 316 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~- 316 (483)
++. . ...+.+.|. ++||+++++..+.++. . ++ +.+......+
T Consensus 570 -------~~~-------~--~~~~~~~l~-------------~~GV~i~~~~~v~~i~--~--~~----v~~~~~~~~~~ 612 (729)
T 1o94_A 570 -------FTL-------E--YPNMMRRLH-------------ELHVEELGDHFCSRIE--P--GR----MEIYNIWGDGS 612 (729)
T ss_dssp -------HTT-------C--HHHHHHHHH-------------HTTCEEECSEEEEEEE--T--TE----EEEEETTCSCS
T ss_pred -------ccc-------c--HHHHHHHHH-------------hCCCEEEcCcEEEEEE--C--Ce----EEEEEecCCce
Confidence 000 0 111223332 6799999999999997 3 22 2222100000
Q ss_pred ----CCCC-ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC
Q 011535 317 ----GGPG-KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (483)
Q Consensus 317 ----~~~g-~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~ 391 (483)
++.+ +.+. ..++..+++||.||+|+|++|+. .+.+..+. .++++ ++|++|+|||+|||+.
T Consensus 613 ~~~~~~~~~~~~~-~~~~~~~i~aD~Vv~a~G~~p~~----~l~~~l~~--------~vd~~--~~t~~~~VyAiGD~~~ 677 (729)
T 1o94_A 613 KRTYRGPGVSPRD-ANTSHRWIEFDSLVLVTGRHSEC----TLWNELKA--------RESEW--AENDIKGIYLIGDAEA 677 (729)
T ss_dssp CCCCCCTTSCSSC-CCCCCEEEECSEEEEESCEEECC----HHHHHHHH--------TGGGT--GGGTCCEEEECGGGTS
T ss_pred EEecccccccccc-cCCcceeeeCCEEEECCCCCCCh----HHHHHHhh--------hcccc--cccCCCCeEEEeCccc
Confidence 0001 1011 13445579999999999999976 23221111 13454 6789999999999975
Q ss_pred CCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 392 GPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 392 g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
+..+. .|+.+|+.+|.+|..++....+
T Consensus 678 -~~~~~-~A~~~G~~aA~~i~~~l~~~~~ 704 (729)
T 1o94_A 678 -PRLIA-DATFTGHRVAREIEEANPQIAI 704 (729)
T ss_dssp -CCCHH-HHHHHHHHHHHTTTSSCTTSCC
T ss_pred -hhhHH-HHHHHHHHHHHHhhhhcccCCC
Confidence 55555 7999999999999887665444
No 82
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.95 E-value=2.2e-27 Score=241.17 Aligned_cols=290 Identities=13% Similarity=0.102 Sum_probs=187.1
Q ss_pred CeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCCCCce-ecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~ggl~-~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++|+|||||+||+++|..|++ .+ .+|+|||+++.++... ...+.++.....++...+.+.+.+.+++++.+.+.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~ 79 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVE 79 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEE
Confidence 689999999999999999999 66 9999999998643211 11122233333444455667777789999888544
Q ss_pred ce-----EEEeccee-----eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEE
Q 011535 96 GS-----SVSLSELR-----QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (483)
Q Consensus 96 ~~-----~~~~~~~~-----~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 165 (483)
.. .+.+.+.. ..||+||+|||+ .+..+.+||.+. ..++...+..... ....-.. ..++++||
T Consensus 80 ~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~-~~~~~~ipG~~~-~~~~~~~~~~~~~----~~~~l~~--~~~~~vVi 151 (409)
T 3h8l_A 80 KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGA-HLATELVKGWDK-YGYSVCEPEFATK----LREKLES--FQGGNIAI 151 (409)
T ss_dssp EEETTTTEEEEECTTSCEEEEECSEEEECCCC-EECGGGSBTHHH-HCEESSSTTHHHH----HHHHHHH--CCSEEEEE
T ss_pred EEeCCCCEEEEccCCcccceeeCCEEEECCCC-CcCccCCCChhh-cCcCcCCHHHHHH----HHHHHHH--hcCCeEEE
Confidence 22 34444333 569999999999 566667887542 1111111100000 0000000 12567799
Q ss_pred cCC-------------------c------hHHHHHHHHhcCCccccccccchHHHHHHhcCCc---cEEEEEeecCcccc
Q 011535 166 GQG-------------------N------VALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQA 217 (483)
Q Consensus 166 G~G-------------------~------~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~---~~V~li~r~~~~~~ 217 (483)
|+| . .++|+|..+.. .+++.+. .+|+++.+.+ ...
T Consensus 152 G~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~----------------~l~~~g~~~~~~v~~~~~~~-~l~ 214 (409)
T 3h8l_A 152 GSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHG----------------YFKKKGMLDKVHVTVFSPGE-YLS 214 (409)
T ss_dssp EECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHH----------------HHHTTTCTTTEEEEEECSSS-SST
T ss_pred EecccccCCCccccccccccCCCCcccCCHHHHHHHHHHH----------------HHHHcCCCCCeEEEEEeCCc-ccc
Confidence 999 2 47888876653 2333443 4899998876 221
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +...+.+.+.+. ++||++++++.+.++.
T Consensus 215 ~~~----------------------------------~~~~~~~~~~l~-------------~~gV~~~~~~~v~~i~-- 245 (409)
T 3h8l_A 215 DLS----------------------------------PNSRKAVASIYN-------------QLGIKLVHNFKIKEIR-- 245 (409)
T ss_dssp TBC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCCEEEEC--
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEcCCceEEEC--
Confidence 111 112222233333 6789999999999996
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCC--CcccCCCCeeeecCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHK--GIVPNIRGRVLKNISGD 375 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~--g~~~~~~G~v~v~~~~~ 375 (483)
. + .+.+. +| +++++|+||+++|++|++ +.... ++ .+++|++.+|+.
T Consensus 246 ~--~----~v~~~----------------~g--~~~~~D~vi~a~G~~~~~-----~l~~~~~~l-~~~~G~i~vd~~-- 293 (409)
T 3h8l_A 246 E--H----EIVDE----------------KG--NTIPADITILLPPYTGNP-----ALKNSTPDL-VDDGGFIPTDLN-- 293 (409)
T ss_dssp S--S----EEEET----------------TS--CEEECSEEEEECCEECCH-----HHHTSCGGG-SCTTSCBCBBTT--
T ss_pred C--C----eEEEC----------------CC--CEEeeeEEEECCCCCccH-----HHHhccccC-cCCCCCEEeCcc--
Confidence 3 2 23321 22 379999999999999975 33444 33 467899999987
Q ss_pred CCc-ccCceeeeccCCC--CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 376 SSQ-VENGLYVCGWLKR--GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 376 ~~t-~~p~vya~Gd~~~--g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+++ +.|+||++|||+. .+.... .|..||..+|.+|...|.++
T Consensus 294 ~~~~~~~~vfa~GD~~~~~~~~~~~-~A~~q~~~aa~~i~~~l~~~ 338 (409)
T 3h8l_A 294 MVSIKYDNVYAVGDANSMTVPKLGY-LAVMTGRIAAQHLANRLGVP 338 (409)
T ss_dssp SBBSSCTTEEECGGGBTTCCSCCHH-HHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCCEEEeehhccCCCCcHHH-HHHHHHHHHHHHHHHHhcCC
Confidence 555 8999999999985 344444 79999999999999999443
No 83
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.94 E-value=3.7e-27 Score=241.07 Aligned_cols=303 Identities=13% Similarity=0.099 Sum_probs=189.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
+++|+|||||+||+++|..|++.+++++|+|||+++.+++.. ...+.++.....++...+.+.++..+++++.+.....
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 81 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI 81 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcchhccCccCHHHHHHHHHHHHHhcCCEEEEEEEEEE
Confidence 369999999999999999999943449999999998754321 1111123333344444455666677899987755432
Q ss_pred -----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCC----CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 98 -----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDL----IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 98 -----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~----~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
.+.++++. ..||+||+|||+. +..+ |... ..+.+..+......... .+...++++|||+
T Consensus 82 d~~~~~v~~~~g~~i~~d~liiAtG~~-~~~p---g~~~~g~~~~~~~~~~a~~~~~~~~-------~~~~~~~~vVVGg 150 (430)
T 3h28_A 82 DPDANTVTTQSGKKIEYDYLVIATGPK-LVFG---AEGQEENSTSICTAEHALETQKKLQ-------ELYANPGPVVIGA 150 (430)
T ss_dssp ETTTTEEEETTCCEEECSEEEECCCCE-EECC---SBTHHHHSCCCSSHHHHHHHHHHHH-------HHHHSCCCEEEEE
T ss_pred ECCCCEEEECCCcEEECCEEEEcCCcc-cccC---CCCCcCCccCcCCHHHHHHHHHHHH-------HHHhcCCeEEEEc
Confidence 35555544 5799999999984 4333 3221 11221111111000000 0001345788999
Q ss_pred CchH------HHHHHHHhcCCccccccccchHHHHHHhcCCc---cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 168 GNVA------LDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 168 G~~g------~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~---~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
|++| +|+|..+.. .+++.+. .+|+++.+.+.+.. +.
T Consensus 151 G~~~~~~G~~~E~a~~la~----------------~l~~~g~~~~~~V~~v~~~~~~~~-~~------------------ 195 (430)
T 3h28_A 151 IPGVSCFGPAYEFALMLHY----------------ELKKRGIRYKVPMTFITSEPYLGH-FG------------------ 195 (430)
T ss_dssp CTTCCCCHHHHHHHHHHHH----------------HHHHTTCGGGCCEEEECSSSSTTC-TT------------------
T ss_pred CCCCCcCcHHHHHHHHHHH----------------HHHHcCCccceEEEEecCCccccc-cc------------------
Confidence 8764 999977653 2333443 36888887754310 00
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
++.. +.....+.+.+. ++||++++++.+.++. . + .+++.+.
T Consensus 196 ------l~~~------~~~~~~l~~~l~-------------~~GV~i~~~~~v~~v~--~--~----~v~~~~~------ 236 (430)
T 3h28_A 196 ------VGGI------GASKRLVEDLFA-------------ERNIDWIANVAVKAIE--P--D----KVIYEDL------ 236 (430)
T ss_dssp ------TTCS------TTHHHHHHHHHH-------------HTTCEEECSCEEEEEC--S--S----EEEEECT------
T ss_pred ------cCcc------hHHHHHHHHHHH-------------HCCCEEEeCCEEEEEe--C--C----eEEEEec------
Confidence 0000 111222233333 6799999999999996 3 2 2344321
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCC-eeeecCCCCCCcccCceeeeccCCCC----
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRG-RVLKNISGDSSQVENGLYVCGWLKRG---- 392 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G-~v~v~~~~~~~t~~p~vya~Gd~~~g---- 392 (483)
.++++++++|+|++++|++|++ .+... .++ .+++| ++.+|+++ +.+++|+|||+|||+..
T Consensus 237 --------~~~g~~i~~D~vv~a~G~~~~~----~l~~~~~gl-~~~~G~~i~Vd~~l-~t~~~~~Ifa~GD~~~~~~~~ 302 (430)
T 3h28_A 237 --------NGNTHEVPAKFTMFMPSFQGPE----VVASAGDKV-ANPANKMVIVNRCF-QNPTYKNIFGVGVVTAIPPIE 302 (430)
T ss_dssp --------TSCEEEEECSEEEEECEEECCH----HHHTTCTTT-BCTTTCCBCCCTTS-BCSSSTTEEECSTTBCCCCSS
T ss_pred --------CCCceEEeeeEEEECCCCccch----hHhhccccC-cCCCCCEEecCccc-cCCCCCCEEEEEeeeccCCcc
Confidence 2445689999999999999865 12222 466 67789 99999974 33499999999999863
Q ss_pred --------CcchhHhhHHHHHHHHHHHHHHHhcCcCC
Q 011535 393 --------PTGIIATNLYCAEETVASISEDLEQGVLA 421 (483)
Q Consensus 393 --------~~~~~~~a~~~g~~~a~~I~~~l~~~~~~ 421 (483)
|.... .|+.||+.+|.||.++|.+.+++
T Consensus 303 ~~~~~~~~pk~~~-~A~~~g~~aa~ni~~~l~g~~~~ 338 (430)
T 3h28_A 303 KTPIPTGVPKTGM-MIEQMAMAVAHNIVNDIRNNPDK 338 (430)
T ss_dssp CCSSCCCCCCCHH-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCCchHH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 23344 79999999999999999987654
No 84
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.94 E-value=1.9e-25 Score=229.60 Aligned_cols=267 Identities=17% Similarity=0.158 Sum_probs=176.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCCCCCCceecccC------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVRSGVA------------------------------ 65 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~~~ggl~~~g~~------------------------------ 65 (483)
..++|+||||||||+++|..|++.+ . +|+|||+.+.+||.+.+.-.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 4589999999999999999999998 7 99999999888776654310
Q ss_pred --------------------------CCCCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecc---e----
Q 011535 66 --------------------------PDHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE---L---- 104 (483)
Q Consensus 66 --------------------------p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~---~---- 104 (483)
+.++....+..++.+.+...+..+++++.|.. .+++.+ +
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 01112345667777777766666666766531 344433 2
Q ss_pred eeccCEEEEccCCC-CCCCCCCCCCCC-----C-CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHH
Q 011535 105 RQLYHVVVLAYGAE-SDRALGIPGEDL-----I-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (483)
Q Consensus 105 ~~~yd~vvlAtG~~-~~~~~~ipg~~~-----~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~ 177 (483)
...||+||+|||+. .|+.+++||.+. + .++++.++.. + ..+ .+++|+|||+|++|+|+|..
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~-----~------~~~-~~k~VvVvG~G~sg~e~A~~ 230 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFRE-----P------ELF-VGESVLVVGGASSANDLVRH 230 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCC-----G------GGG-TTCCEEEECSSHHHHHHHHH
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCC-----h------hhc-CCCEEEEEccCcCHHHHHHH
Confidence 35699999999984 356667888541 2 2555554431 0 012 57899999999999999999
Q ss_pred HhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHH
Q 011535 178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257 (483)
Q Consensus 178 L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (483)
|++ .+.+.|+++.|++.+.
T Consensus 231 l~~--------------------~~~~~V~l~~r~~~~l----------------------------------------- 249 (447)
T 2gv8_A 231 LTP--------------------VAKHPIYQSLLGGGDI----------------------------------------- 249 (447)
T ss_dssp HTT--------------------TSCSSEEEECTTCCSC-----------------------------------------
T ss_pred HHH--------------------HhCCcEEEEeCCCCcC-----------------------------------------
Confidence 986 3433399999886420
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCe
Q 011535 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGM 337 (483)
Q Consensus 258 ~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~ 337 (483)
...+|.+ ...+.++. . +++ .|.+. +|+ .++++|.
T Consensus 250 ---------------------~~~~i~~--~~~v~~~~--~-~~~---~v~~~----------------dG~-~~~~~D~ 283 (447)
T 2gv8_A 250 ---------------------QNESLQQ--VPEITKFD--P-TTR---EIYLK----------------GGK-VLSNIDR 283 (447)
T ss_dssp ---------------------BCSSEEE--ECCEEEEE--T-TTT---EEEET----------------TTE-EECCCSE
T ss_pred ---------------------CCCCeEE--ecCeEEEe--c-CCC---EEEEC----------------CCC-EeccCCE
Confidence 0345553 45566665 2 122 33332 232 3489999
Q ss_pred EEEeeecCCCCCCCCCc-----cCCC--CcccCCCCeeeecCCCC-CCcccCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 338 VLKSIGYKSVPVNGLPF-----DNHK--GIVPNIRGRVLKNISGD-SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 338 vi~a~G~~~~~~~~l~~-----~~~~--g~~~~~~G~v~v~~~~~-~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
||+|||++|+. +| .+.. ++.. ++.+.++.+.. ..++.|+||++||+.... ....|..||+.+|.
T Consensus 284 vi~atG~~~~~----~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~--~~~~a~~qa~~~a~ 355 (447)
T 2gv8_A 284 VIYCTGYLYSV----PFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV--PFPTSQAQAAFLAR 355 (447)
T ss_dssp EEECCCBCCCC----CCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC--HHHHHHHHHHHHHH
T ss_pred EEECCCCCcCC----CCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc--CchHHHHHHHHHHH
Confidence 99999999975 34 4432 3333 34443333210 126889999999997543 34468899999998
Q ss_pred HHHH
Q 011535 410 SISE 413 (483)
Q Consensus 410 ~I~~ 413 (483)
+|..
T Consensus 356 ~~~g 359 (447)
T 2gv8_A 356 VWSG 359 (447)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8854
No 85
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.94 E-value=6.8e-26 Score=233.96 Aligned_cols=336 Identities=13% Similarity=0.081 Sum_probs=182.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCceecccC-------------------C----------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQE---AQVDIIDRLPTPFGLVRSGVA-------------------P---------- 66 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~---~~v~lie~~~~~ggl~~~g~~-------------------p---------- 66 (483)
.++|+||||||||+++|..|++.+++ .+|+|||+.+.++.. .+.. |
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~--~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l 107 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH--GNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL 107 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSS--GGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCc--CCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence 35899999999999999999999755 899999999875521 1100 1
Q ss_pred --------------CCCChHHHHHHHHHHHhcCCeEEEeCeEEce-------------EEEecce-----eeccCEEEEc
Q 011535 67 --------------DHPETKIVINQFSRVVQHERCSFFGNVTLGS-------------SVSLSEL-----RQLYHVVVLA 114 (483)
Q Consensus 67 --------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~-------------~~~~~~~-----~~~yd~vvlA 114 (483)
.++...++..++.+.+...++.++.++.+.. .+.+.++ ...||+||+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 0112345566677777777777777765421 2222222 3469999999
Q ss_pred cCCCCCCCCC-CCCCCCC-CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccch
Q 011535 115 YGAESDRALG-IPGEDLI-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIAS 192 (483)
Q Consensus 115 tG~~~~~~~~-ipg~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~ 192 (483)
||+ .+..|+ +++.... .++++.++...+.... .....+++|+|||+|++|+|+|..|.+
T Consensus 188 tG~-~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vvVvGgG~sg~e~a~~l~~------------ 248 (463)
T 3s5w_A 188 PGG-TPRIPQVFRALKGDGRVFHHSQYLEHMAKQP------CSSGKPMKIAIIGGGQSAAEAFIDLND------------ 248 (463)
T ss_dssp CCC-EECCCGGGGGGTTCTTEEEGGGHHHHHCC-------------CEEEEEECCSHHHHHHHHHHHH------------
T ss_pred CCC-CCCCcchhhhcCCCCcEEECHHHHhhHHHhh------hcccCCCeEEEECCCHhHHHHHHHHHh------------
Confidence 998 454443 2333222 4566655543222110 011147899999999999999999986
Q ss_pred HHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHH-H-----------hhccHHHHH
Q 011535 193 YAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE-E-----------MKNSRIQRR 260 (483)
Q Consensus 193 ~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~r 260 (483)
..+..+|+++.|++.+......+-..+++. |.. ...+..++.... . ....+....
T Consensus 249 -------~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~-p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (463)
T 3s5w_A 249 -------SYPSVQADMILRASALKPADDSPFVNEVFA-PKF-----TDLIYSREHAERERLLREYHNTNYSVVDTDLIER 315 (463)
T ss_dssp -------HCTTEEEEEECSSSSCCBCCCCHHHHGGGS-HHH-----HHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHH
T ss_pred -------cCCCCeEEEEEeCCCCcCccCCccchhccC-hhH-----HHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHH
Confidence 234679999999986432111110000000 000 000000000000 0 000111112
Q ss_pred HHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEE
Q 011535 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLK 340 (483)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~ 340 (483)
+.+.+..... ....+|++++++.+.++. . +++ ...+.+.+. .+|+..+++||+||+
T Consensus 316 ~~~~l~~~~~-------~~~~~v~i~~~~~v~~v~--~-~~~-~~~v~~~~~-------------~~g~~~~~~~D~Vv~ 371 (463)
T 3s5w_A 316 IYGVFYRQKV-------SGIPRHAFRCMTTVERAT--A-TAQ-GIELALRDA-------------GSGELSVETYDAVIL 371 (463)
T ss_dssp HHHHHHHHHH-------HCCCCSEEETTEEEEEEE--E-ETT-EEEEEEEET-------------TTCCEEEEEESEEEE
T ss_pred HHHHHHHHHh-------cCCCCeEEEeCCEEEEEE--e-cCC-EEEEEEEEc-------------CCCCeEEEECCEEEE
Confidence 2222221111 013689999999999987 3 233 223444321 145556899999999
Q ss_pred eeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCc----ccCceeeeccCCC--C--CcchhHhhHHHHHHHHHHHH
Q 011535 341 SIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ----VENGLYVCGWLKR--G--PTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 341 a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t----~~p~vya~Gd~~~--g--~~~~~~~a~~~g~~~a~~I~ 412 (483)
|||++|++.. +|........ |++.++.++ +.. ..|+||++|||.. | .......|.+++.+++..+.
T Consensus 372 AtG~~p~~~~--~~l~~l~~~~---g~i~v~~~~-~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 372 ATGYERQLHR--QLLEPLAEYL---GDHEIGRDY-RLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp CCCEECCC-C--TTTGGGGGGB---C--CCCTTS-BCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred eeCCCCCCcc--chhHHHHHHh---CCcccCccc-ccccCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 9999998422 2333222111 566666653 212 2577999999973 2 11222257777776655444
Q ss_pred HHHhcC
Q 011535 413 EDLEQG 418 (483)
Q Consensus 413 ~~l~~~ 418 (483)
+.....
T Consensus 446 ~~~~~~ 451 (463)
T 3s5w_A 446 HLKPGT 451 (463)
T ss_dssp HHC---
T ss_pred hcCCch
Confidence 443333
No 86
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.94 E-value=6.2e-27 Score=243.21 Aligned_cols=296 Identities=13% Similarity=0.118 Sum_probs=180.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-C------ceecccCCC---------CC--------ChHH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-G------LVRSGVAPD---------HP--------ETKI 73 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-g------l~~~g~~p~---------~~--------~~~~ 73 (483)
..++|+|||||+||++||..|++.+++.+|+|||+.+.++ . .+..+..+. ++ ...+
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 4578999999999999999999885569999999987642 1 011110000 00 0000
Q ss_pred HHHHHHHH--HhcCCeEEEeCeEEc------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCC----CCCeeecceee
Q 011535 74 VINQFSRV--VQHERCSFFGNVTLG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED----LIGVHSAREFV 140 (483)
Q Consensus 74 ~~~~~~~~--~~~~~v~~~~~~~v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~----~~~v~~a~~~~ 140 (483)
.......+ +...+++++.++.+. +.+.+.++. ..||+||||||+ .++.+++++.. ..+++..+.+.
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs-~p~~~~~~~~~~~~~~~~v~~~~~~~ 168 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGG-TPRSLSAIDRAGAEVKSRTTLFRKIG 168 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCE-EECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCCcccccccccCceEEEcCHH
Confidence 00000011 124578998885442 245555543 479999999998 56655554431 12333222111
Q ss_pred eeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCC
Q 011535 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT 220 (483)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~ 220 (483)
... .+...+..+++|+|||+|++|+|+|..|.+ ..++.+ .+|+++.+.+.......
T Consensus 169 d~~-------~l~~~~~~~~~vvViGgG~iG~E~A~~l~~----------------~~~~~g-~~V~~v~~~~~~~~~~l 224 (493)
T 1m6i_A 169 DFR-------SLEKISREVKSITIIGGGFLGSELACALGR----------------KARALG-TEVIQLFPEKGNMGKIL 224 (493)
T ss_dssp HHH-------HHHHHHHHCSEEEEECCSHHHHHHHHHHHH----------------HHHHHT-CEEEEECSSSSTTTTTS
T ss_pred HHH-------HHHHHhhcCCeEEEECCCHHHHHHHHHHHh----------------hhhhcC-CEEEEEecCcccccccC
Confidence 000 000001136899999999999999999874 011112 36888887653211100
Q ss_pred HHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCC
Q 011535 221 AKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300 (483)
Q Consensus 221 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~ 300 (483)
+ +.+...+.+.+. ++||+++++..+.++. . +
T Consensus 225 -------------------------~--------~~~~~~~~~~l~-------------~~GV~v~~~~~V~~i~--~-~ 255 (493)
T 1m6i_A 225 -------------------------P--------EYLSNWTMEKVR-------------REGVKVMPNAIVQSVG--V-S 255 (493)
T ss_dssp -------------------------C--------HHHHHHHHHHHH-------------TTTCEEECSCCEEEEE--E-E
T ss_pred -------------------------C--------HHHHHHHHHHHH-------------hcCCEEEeCCEEEEEE--e-c
Confidence 0 111122223332 7799999999999987 3 2
Q ss_pred CCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC-CCeeeecCCCCCCcc
Q 011535 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI-RGRVLKNISGDSSQV 379 (483)
Q Consensus 301 ~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~-~G~v~v~~~~~~~t~ 379 (483)
++.+ .+++. +| ++++||+||+|+|++|++ .+.+..|+.+++ +|.+.+|++ +++
T Consensus 256 ~~~~-~v~l~----------------dG--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~~~~ggi~Vd~~--l~t- 309 (493)
T 1m6i_A 256 SGKL-LIKLK----------------DG--RKVETDHIVAAVGLEPNV----ELAKTGGLEIDSDFGGFRVNAE--LQA- 309 (493)
T ss_dssp TTEE-EEEET----------------TS--CEEEESEEEECCCEEECC----TTHHHHTCCBCTTTCSEECCTT--CEE-
T ss_pred CCeE-EEEEC----------------CC--CEEECCEEEECCCCCccH----HHHHHcCCccccCCCcEEECCC--ccc-
Confidence 3332 23321 22 389999999999999986 355566777775 588889987 556
Q ss_pred cCceeeeccCCCCCc------c--hhHhhHHHHHHHHHHHHH
Q 011535 380 ENGLYVCGWLKRGPT------G--IIATNLYCAEETVASISE 413 (483)
Q Consensus 380 ~p~vya~Gd~~~g~~------~--~~~~a~~~g~~~a~~I~~ 413 (483)
.|+|||+|||+..+. . ....|+.||+.+|.||+.
T Consensus 310 ~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g 351 (493)
T 1m6i_A 310 RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351 (493)
T ss_dssp ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcC
Confidence 699999999986321 1 223699999999999873
No 87
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.94 E-value=8.4e-26 Score=243.34 Aligned_cols=282 Identities=18% Similarity=0.160 Sum_probs=185.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...++|+||||||||++||..|++.+ ++|+|||+.+.+||.+.+ ...|+.....+....+.+.++..+++++.++.+
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 448 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 448 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEe
Confidence 34689999999999999999999998 999999999988887653 344666666666677777788889999988765
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
.. .+. ..||+||||||+ .++.+++||.+..++++..++.. . ....+++|+|||+|++|+|+|
T Consensus 449 ~~----~~~-~~~d~lviAtG~-~p~~~~i~G~~~~~v~~~~~~l~---~---------~~~~~~~VvVIGgG~~g~E~A 510 (671)
T 1ps9_A 449 TA----DQL-QAFDETILASGI-VPRTPPIDGIDHPKVLSYLDVLR---D---------KAPVGNKVAIIGCGGIGFDTA 510 (671)
T ss_dssp CS----SSS-CCSSEEEECCCE-EECCCCCBTTTSTTEEEHHHHHT---S---------CCCCCSEEEEECCHHHHHHHH
T ss_pred cH----HHh-hcCCEEEEccCC-CcCCCCCCCCCCCcEeeHHHHhh---C---------CCCCCCeEEEECCChhHHHHH
Confidence 31 111 179999999999 67888899988777887655431 1 112578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHH------------------hcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 176 RILLRPTEELATTDIASYAWTAL------------------EGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l------------------~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
..|.+...+- +-+........ ......+|+++.+........
T Consensus 511 ~~l~~~G~~v--tv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~------------------ 570 (671)
T 1ps9_A 511 MYLSQPGEST--SQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQG------------------ 570 (671)
T ss_dssp HHHTCCSSCG--GGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTT------------------
T ss_pred HHHHhcCCCc--ccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccc------------------
Confidence 9998632110 00000000000 001124566666543221000
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
++ +.....+.+.|. ++||+++++..+.++. . + ++.+..
T Consensus 571 -------l~--------~~~~~~~~~~l~-------------~~GV~v~~~~~v~~i~--~--~----~v~~~~------ 608 (671)
T 1ps9_A 571 -------LG--------KTTGWIHRTTLL-------------SRGVKMIPGVSYQKID--D--D----GLHVVI------ 608 (671)
T ss_dssp -------SC--------TTTHHHHHHHHH-------------HTTCEEECSCEEEEEE--T--T----EEEEEE------
T ss_pred -------cc--------cccHHHHHHHHH-------------hcCCEEEeCcEEEEEe--C--C----eEEEec------
Confidence 00 011111223332 6799999999988886 3 3 233321
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchh
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~ 397 (483)
+|+.+++++|.||+|+|++|++ .|.+. + . ...++||++|||+.......
T Consensus 609 ---------~G~~~~i~~D~Vi~a~G~~p~~----~l~~~--l--~--------------~~g~~v~aiGD~~~~~~~~~ 657 (671)
T 1ps9_A 609 ---------NGETQVLAVDNVVICAGQEPNR----ALAQP--L--I--------------DSGKTVHLIGGCDVAMELDA 657 (671)
T ss_dssp ---------TTEEEEECCSEEEECCCEEECC----TTHHH--H--H--------------TTTCCEEECGGGTCCSSCCH
T ss_pred ---------CCeEEEEeCCEEEECCCccccH----HHHHH--H--H--------------hcCCCEEEECCcCccCchhH
Confidence 3444689999999999999976 12211 1 0 12268999999976432123
Q ss_pred HhhHHHHHHHHHHH
Q 011535 398 ATNLYCAEETVASI 411 (483)
Q Consensus 398 ~~a~~~g~~~a~~I 411 (483)
..|++||..+|.+|
T Consensus 658 ~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 658 RRAIAQGTRLALEI 671 (671)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 37999999999875
No 88
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.92 E-value=5.1e-25 Score=228.77 Aligned_cols=251 Identities=16% Similarity=0.108 Sum_probs=179.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccC--CCCC-ChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA--PDHP-ETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~--p~~~-~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
.++|+||||||||+++|..|++. .+|+|||+.+.+||.+.+... .+++ ...++...+.+.+ ..+++++.+..+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v 183 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA 183 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence 35899999999999999999987 899999999988876543210 1111 3445555555545 568998888765
Q ss_pred ce--------EE-Eecce---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEE
Q 011535 96 GS--------SV-SLSEL---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAV 163 (483)
Q Consensus 96 ~~--------~~-~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vv 163 (483)
.. .+ ..+.. ...||+||||||+ .++.+++||.+.+++++..++....+.. ....+++++
T Consensus 184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa-~~~~~~~~g~~~~gv~~~~~~~~~~~~~--------~~~~~~~vv 254 (493)
T 1y56_A 184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA-IDSTMLFENNDMPGVFRRDFALEVMNVW--------EVAPGRKVA 254 (493)
T ss_dssp CCCEECSSSEEEEEEETTEEEEEEESCEEECCCE-EECCCCCTTTTSTTEEEHHHHHHHHHTS--------CBCSCSEEE
T ss_pred EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCC-CccCCCCCCCCCCCEEEcHHHHHHHHhc--------ccCCCCEEE
Confidence 21 11 11222 3469999999998 5778889999999999876654333221 112568999
Q ss_pred EEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccccc
Q 011535 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (483)
Q Consensus 164 VIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~ 243 (483)
|||+|++|+| ..+.
T Consensus 255 ViGgG~~gle--~~l~---------------------------------------------------------------- 268 (493)
T 1y56_A 255 VTGSKADEVI--QELE---------------------------------------------------------------- 268 (493)
T ss_dssp EESTTHHHHH--HHHH----------------------------------------------------------------
T ss_pred EECCCHHHHH--HHHH----------------------------------------------------------------
Confidence 9999999998 1111
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCcee
Q 011535 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (483)
Q Consensus 244 ~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~ 323 (483)
+.||+++++..+.++. . ++.+..+.+.
T Consensus 269 ------------------------------------~~GV~v~~~~~v~~i~--~--~~~v~~v~~~------------- 295 (493)
T 1y56_A 269 ------------------------------------RWGIDYVHIPNVKRVE--G--NEKVERVIDM------------- 295 (493)
T ss_dssp ------------------------------------HHTCEEEECSSEEEEE--C--SSSCCEEEET-------------
T ss_pred ------------------------------------hCCcEEEeCCeeEEEe--c--CCceEEEEeC-------------
Confidence 4578888899999997 4 4445444321
Q ss_pred eccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc--CCCCeee-ecCCCCCCcccCceeeeccCCCCCcchhHhh
Q 011535 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP--NIRGRVL-KNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (483)
Q Consensus 324 ~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~--~~~G~v~-v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a 400 (483)
+| .+++||+||+|+|++|+. .+....|+.+ +++|++. +|++ ++ +.|+|||+|||+.. ..+. .|
T Consensus 296 ---~g--~~i~aD~Vv~a~G~~p~~----~l~~~~g~~~~~~~~g~i~~vd~~--~~-s~~~vya~GD~~~~-~~~~-~A 361 (493)
T 1y56_A 296 ---NN--HEYKVDALIFADGRRPDI----NPITQAGGKLRFRRGYYSPVLDEY--HR-IKDGIYVAGSAVSI-KPHY-AN 361 (493)
T ss_dssp ---TC--CEEECSEEEECCCEEECC----HHHHHTTCCEEEETTEEEECCCTT--SE-EETTEEECSTTTCC-CCHH-HH
T ss_pred ---CC--eEEEeCEEEECCCcCcCc----hHHHhcCCCccccCCceeeccccc--cC-cCCCEEEEeccCCc-cCHH-HH
Confidence 12 489999999999999976 3444555543 4678887 7876 45 89999999999754 3444 79
Q ss_pred HHHHHHHHHHHHHHH
Q 011535 401 LYCAEETVASISEDL 415 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l 415 (483)
+.+|+.+|.+|...+
T Consensus 362 ~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 362 YLEGKLVGAYILKEF 376 (493)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999887
No 89
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.91 E-value=9.5e-24 Score=220.98 Aligned_cols=162 Identities=18% Similarity=0.173 Sum_probs=117.4
Q ss_pred CCeEEEECccHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~-~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
.++|+|||||+||+++|..|+ +.+ .+|+|||+.+.+||.+.....|+ +..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G--~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 85 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELG--LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYIT 85 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCC
Confidence 469999999999999999999 877 89999999988887654322122 112
Q ss_pred hHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++.+.+++.++ ++++++.+.. .+++.++. ..||+||+|||. ..++.|++||.+ ..+ ++
T Consensus 86 ~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 165 (540)
T 3gwf_A 86 QPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETI 165 (540)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEE
Confidence 44677788888887776 6666655421 34444444 479999999995 357778899865 222 23
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+.. ..+. .+++|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 166 ~~~~~~~-----------~~~~-~~krV~VIG~G~sgve~a~~l~~---------------------~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 166 HTAAWPE-----------GKSL-AGRRVGVIGTGSTGQQVITSLAP---------------------EVEHLTVFVRTPQ 212 (540)
T ss_dssp EGGGCCS-----------SCCC-TTSEEEEECCSHHHHHHHHHHTT---------------------TCSEEEEEESSCC
T ss_pred EeecCCC-----------cccc-ccceEEEECCCchHHHHHHHHHh---------------------hCCEEEEEECCCC
Confidence 3332221 1122 67999999999999999999986 4578999999987
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 213 ~ 213 (540)
T 3gwf_A 213 Y 213 (540)
T ss_dssp C
T ss_pred c
Confidence 3
No 90
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.89 E-value=1e-21 Score=205.82 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
..++|+|||||+||+++|..|++.+ ++|+|||+.+.+||.+.....|+ +..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g--~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~ 85 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAG--MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFAS 85 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCC
Confidence 4579999999999999999999988 99999999998888765333331 223
Q ss_pred hHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++.+.+++.++ ++.+++.+.. .+++.++. ..||+||+|||. ..++.|++||.+ ..+ ++
T Consensus 86 ~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 165 (545)
T 3uox_A 86 QPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESF 165 (545)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeE
Confidence 45777778887777665 5555654421 34444443 479999999994 257778899965 222 33
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+...+.+.++ ..+. .+++|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 166 h~~~~~~~~~~~~~----~~~~-~~krV~VIG~G~tgve~a~~la~---------------------~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 166 HSSRWPTDAEGAPK----GVDF-TGKRVGVIGTGATGVQIIPIAAE---------------------TAKELYVFQRTPN 219 (545)
T ss_dssp EGGGCCBCTTSCBS----CCCC-BTCEEEEECCSHHHHHHHHHHTT---------------------TBSEEEEEESSCC
T ss_pred Eccccccccccccc----cccc-CCCeEEEECCCccHHHHHHHHHh---------------------hCCEEEEEEcCCC
Confidence 33333221111110 0123 67999999999999999999986 4578999999986
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 220 ~ 220 (545)
T 3uox_A 220 W 220 (545)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.88 E-value=1.7e-21 Score=204.26 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=118.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.....|+ +..
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~ 97 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQG--LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYAT 97 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCB
T ss_pred CCCCEEEECchHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCC
Confidence 4579999999999999999999988 99999999988887654221121 223
Q ss_pred hHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++.+.+++.++ ++++++.+.. .+++.++. ..||+||+|||. ..+..|++||.+ ..+ ++
T Consensus 98 ~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 177 (549)
T 4ap3_A 98 QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIV 177 (549)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence 45777888888887776 6666655421 34444444 479999999994 257778899875 332 33
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+.. + ..++ .+++|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 178 ~~~~~~~------~----~~~~-~~krV~VIG~G~sgve~a~~l~~---------------------~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 178 HTARWPH------D----GVDF-TGKRVGVIGTGSSGIQSIPIIAE---------------------QAEQLFVFQRSAN 225 (549)
T ss_dssp EGGGCCT------T----CCCC-BTCEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEEESSCC
T ss_pred Eeccccc------c----cccc-CCCEEEEECCCchHHHHHHHHHh---------------------hCCEEEEEECCCC
Confidence 3332210 0 1123 67999999999999999999986 3478999999986
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 226 ~ 226 (549)
T 4ap3_A 226 Y 226 (549)
T ss_dssp C
T ss_pred c
Confidence 4
No 92
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.87 E-value=9.5e-21 Score=199.00 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=113.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
...+|+|||||++|+++|..|++.+ ++|+|||+.+.+||.+.....|+ ++.
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~ 92 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS 92 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence 4579999999999999999999998 99999999988877653222221 122
Q ss_pred hHHHHHHHHHHHhcCC--eEEEeCeEEce----------EEEecce-eeccCEEEEccCCC-CCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHER--CSFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYGAE-SDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~--v~~~~~~~v~~----------~~~~~~~-~~~yd~vvlAtG~~-~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++...+++.+ .++.+++.+.. .++++++ ...||+||+|||.. .++.|.+||.+ .++ ++
T Consensus 93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~ 172 (542)
T 1w4x_A 93 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLY 172 (542)
T ss_dssp HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence 3456666776666554 34555654421 2344444 34699999999963 46677888865 343 23
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+.. + ..++ .+++|+|||+|.+|+|+|..|++ ...+|+++.|++.
T Consensus 173 hs~~~~~------~----~~~~-~gk~V~VIG~G~sg~e~a~~l~~---------------------~~~~vtv~~r~~~ 220 (542)
T 1w4x_A 173 HTGNWPH------E----PVDF-SGQRVGVIGTGSSGIQVSPQIAK---------------------QAAELFVFQRTPH 220 (542)
T ss_dssp EGGGCCS------S----CCCC-BTCEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEEESSCC
T ss_pred ECCCCCC------c----hhcc-CCCEEEEECCCccHHHHHHHHhh---------------------cCceEEEEEcCCc
Confidence 3332210 0 0122 68999999999999999999985 3468999999875
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 221 ~ 221 (542)
T 1w4x_A 221 F 221 (542)
T ss_dssp C
T ss_pred c
Confidence 5
No 93
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.82 E-value=8.2e-19 Score=182.28 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=113.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCC---Cceeccc-------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPF---GLVRSGV------------------- 64 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~g---gl~~~g~------------------- 64 (483)
.++|+|||+||+||++|..|.+.+ .......+|+.+..+ |++..+.
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~ 118 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS 118 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence 468999999999999999998753 135678899886532 2211110
Q ss_pred -------------------CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce----------------EEEecce-----
Q 011535 65 -------------------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS----------------SVSLSEL----- 104 (483)
Q Consensus 65 -------------------~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----------------~~~~~~~----- 104 (483)
-..++...++..|+++.+++.+..+.+++.|.. .++..++
T Consensus 119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~ 198 (501)
T 4b63_A 119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI 198 (501)
T ss_dssp TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence 012445668888999988887766677766532 2222221
Q ss_pred -eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCc
Q 011535 105 -RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTE 183 (483)
Q Consensus 105 -~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~ 183 (483)
...++.||+|||. .|..|+.++. ...++++.++.+...... ..++ .+|+|+|||+|+||+|++..|++
T Consensus 199 ~~~~ar~vVlatG~-~P~iP~~~~~-~g~v~Hss~y~~~~~~~~-----~~~~-~gKrV~VVG~G~SA~ei~~~L~~--- 267 (501)
T 4b63_A 199 SARRTRKVVIAIGG-TAKMPSGLPQ-DPRIIHSSKYCTTLPALL-----KDKS-KPYNIAVLGSGQSAAEIFHDLQK--- 267 (501)
T ss_dssp EEEEEEEEEECCCC-EECCCTTSCC-CTTEEEGGGHHHHHHHHS-----CCTT-SCCEEEEECCSHHHHHHHHHHHH---
T ss_pred EEEEeCEEEECcCC-CCCCCCCCCC-Ccceeeccccccchhhcc-----cccc-CCcEEEEECCcHHHHHHHHHHHh---
Confidence 1247899999997 4555554443 346888877764332110 0122 78999999999999999999975
Q ss_pred cccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 184 ELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 184 ~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..+..+|+++.|++.+
T Consensus 268 ----------------~~~~~~v~~~~R~~~~ 283 (501)
T 4b63_A 268 ----------------RYPNSRTTLIMRDSAM 283 (501)
T ss_dssp ----------------HSTTCEEEEECSSSSC
T ss_pred ----------------cCCCceEEEEeCCCcc
Confidence 2346789999999643
No 94
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.69 E-value=1.2e-16 Score=142.81 Aligned_cols=175 Identities=13% Similarity=0.069 Sum_probs=115.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||+|++|+++|..|.+ .+ .+|+++.+++.......
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~--------------------~g-~~v~lie~~~~~~~~~~-------------------- 41 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLAR--------------------AG-LKVLVLDGGRSKVKGVS-------------------- 41 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEECSCCTTTTCS--------------------
T ss_pred eEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEeCCCCcccCch--------------------
Confidence 69999999999999999986 44 47999998863221000
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+...+..+.......+. +.+.+... +.|++++++ .+.++. . +++.+ .++
T Consensus 42 ~~~~~~~~~~~~~~~~~~----~~l~~~~~---------~~gv~v~~~-~v~~i~--~-~~~~~-~v~------------ 91 (180)
T 2ywl_A 42 RVPNYPGLLDEPSGEELL----RRLEAHAR---------RYGAEVRPG-VVKGVR--D-MGGVF-EVE------------ 91 (180)
T ss_dssp CCCCSTTCTTCCCHHHHH----HHHHHHHH---------HTTCEEEEC-CCCEEE--E-CSSSE-EEE------------
T ss_pred hhhccCCCcCCCCHHHHH----HHHHHHHH---------HcCCEEEeC-EEEEEE--E-cCCEE-EEE------------
Confidence 000000000000011222 33333322 568999988 888887 3 22221 111
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhh
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a 400 (483)
+.++ ++++|.||+|+|.+|+. ....|+..+ +|++.+|++ ++|+.|+|||+|||+..+......|
T Consensus 92 ------~~~g-~i~ad~vI~A~G~~~~~------~~~~g~~~~-~g~i~vd~~--~~t~~~~i~a~GD~~~~~~~~~~~A 155 (180)
T 2ywl_A 92 ------TEEG-VEKAERLLLCTHKDPTL------PSLLGLTRR-GAYIDTDEG--GRTSYPRVYAAGVARGKVPGHAIIS 155 (180)
T ss_dssp ------CSSC-EEEEEEEEECCTTCCHH------HHHHTCCEE-TTEECCCTT--CBCSSTTEEECGGGGTCCSCCHHHH
T ss_pred ------ECCC-EEEECEEEECCCCCCCc------cccCCCCcc-CceEEeCCC--CCcCCCCEEEeecccCcchhhHHHH
Confidence 1222 79999999999999842 123356667 899999987 7889999999999988765333479
Q ss_pred HHHHHHHHHHHHHHHhcCcCCC
Q 011535 401 LYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
+.+|+.+|.+|...+.+.++..
T Consensus 156 ~~~g~~aa~~i~~~~~~~~~~~ 177 (180)
T 2ywl_A 156 AGDGAYVAVHLVSDLRGEPYKD 177 (180)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHhHHHHHHHHHHHhhhccccc
Confidence 9999999999999998765444
No 95
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.7e-20 Score=183.01 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=86.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-APDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|+|||||||||+||++|+++..+++|+|||+.+.+||.+.++- .+.... +......++++.+++|..+...
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~---l~~~~~~~~~e~Gv~~~~~~~~- 139 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMV---MRKPAHLFLQELEIPYEDEGDY- 139 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEE---EETTTHHHHHHTTCCCEECSSE-
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHH---HHHHHHHHHHHcCCEEEECCcc-
Confidence 45799999999999999999986422399999999999999877641 111111 1112233445567766544211
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
....+.++++++. .++.+.++|.+.........+... . .....+++++|||+|+++++.|.
T Consensus 140 --------~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~---~-------~~~~~~~~v~viggg~~av~~a~ 200 (326)
T 3fpz_A 140 --------VVVKHAALFISTV-LSKVLQLPNVKLFNATCVEDLVTR---P-------PTEKGEVTVAGVVTNWTLVTQAH 200 (326)
T ss_dssp --------EEESCHHHHHHHH-HHHHHTSTTEEEETTEEEEEEEEE---S-------SCSSSSCEEEEEEEEEHHHHTCT
T ss_pred --------eecceeEEEEcch-hhhccccccceeecccccceeecc---C-------CcccCCCEEEEEccCceeeehhh
Confidence 1123334445554 455667777653333333333211 1 01226789999999999999998
Q ss_pred HHhc
Q 011535 177 ILLR 180 (483)
Q Consensus 177 ~L~~ 180 (483)
.+..
T Consensus 201 ~~~~ 204 (326)
T 3fpz_A 201 GTQC 204 (326)
T ss_dssp TSSS
T ss_pred hhhh
Confidence 7764
No 96
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.29 E-value=2e-12 Score=133.05 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+|+|||||+||+++|..|++.+ .+|+|||+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G--~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAG--KKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC
Confidence 6899999999999999999998 999999998
No 97
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.21 E-value=3.2e-11 Score=112.13 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=31.5
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l 415 (483)
|++|+||++|||+ + .++.+.++.||+.+|.+|.++|
T Consensus 196 t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 196 KRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccceeeeecc-c-CccHHHHHHHHHHHHHHHHhhc
Confidence 6899999999999 4 5577688999999999999876
No 98
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.87 E-value=1e-08 Score=90.82 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=69.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc----ee-cccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL----VR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl----~~-~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
++|+|||||++|+++|..|++.+ .+|+|||+.+..... .. ++. |......++...+.+.+++.+++++.+ .
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~gv~v~~~-~ 77 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGRSKVKGVSRVPNYPGL-LDEPSGEELLRRLEAHARRYGAEVRPG-V 77 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSCCTTTTCSCCCCSTTC-TTCCCHHHHHHHHHHHHHHTTCEEEEC-C
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCcccCchhhhccCCC-cCCCCHHHHHHHHHHHHHHcCCEEEeC-E
Confidence 58999999999999999999998 999999998732110 00 111 222335678888888888889999888 4
Q ss_pred Ece--------EEEecceeeccCEEEEccCCC
Q 011535 95 LGS--------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~--------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
+.. .+.++++...+|.||+|+|..
T Consensus 78 v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 78 VKGVRDMGGVFEVETEEGVEKAERLLLCTHKD 109 (180)
T ss_dssp CCEEEECSSSEEEECSSCEEEEEEEEECCTTC
T ss_pred EEEEEEcCCEEEEEECCCEEEECEEEECCCCC
Confidence 421 244444555799999999984
No 99
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.83 E-value=8.8e-09 Score=104.00 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-----------ecccC--------CCC-------
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-----------RSGVA--------PDH------- 68 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-----------~~g~~--------p~~------- 68 (483)
+....++|+|||||+||+++|..|++.+ .+|+|||+.+.+++.+ ..... +.+
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~ 100 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALAR 100 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHh
Confidence 3445679999999999999999999999 9999999998765321 00000 000
Q ss_pred ----------------------------CChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecceeeccCEEE
Q 011535 69 ----------------------------PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSELRQLYHVVV 112 (483)
Q Consensus 69 ----------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~~~~yd~vv 112 (483)
....++...+.+.+++.|++++.++.+.. .+.+.++...+|+||
T Consensus 101 ~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VI 180 (417)
T 3v76_A 101 YRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLV 180 (417)
T ss_dssp SCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEE
T ss_pred cCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEE
Confidence 01235556667777777899998866532 234444555799999
Q ss_pred EccCCCC
Q 011535 113 LAYGAES 119 (483)
Q Consensus 113 lAtG~~~ 119 (483)
+|||...
T Consensus 181 lAtG~~S 187 (417)
T 3v76_A 181 VASGGKS 187 (417)
T ss_dssp ECCCCSS
T ss_pred ECCCCcc
Confidence 9999853
No 100
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.66 E-value=9.9e-08 Score=91.19 Aligned_cols=39 Identities=38% Similarity=0.507 Sum_probs=35.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~gg 58 (483)
..++|+|||||++|+++|..|++. + .+|+|||+.+.+++
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G--~~V~viEk~~~~gg 77 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGG 77 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC--CeEEEEECCCCCCC
Confidence 357999999999999999999997 7 99999999987754
No 101
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.64 E-value=7.3e-08 Score=92.13 Aligned_cols=125 Identities=10% Similarity=0.103 Sum_probs=72.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC-CCCceeeccCCceEEEecCeEEEeeecCCCCCCCC-CccCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG-GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGL-PFDNH 357 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~-~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l-~~~~~ 357 (483)
..|+++++++.+.++. . +++++.++.+....+.-+ .++. .++..++++|.||.|+|..+...... .+...
T Consensus 132 ~~gv~i~~~~~V~~i~--~-~~~~v~gv~~~~~~~~~~~~~g~-----~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~ 203 (284)
T 1rp0_A 132 RPNVKLFNAVAAEDLI--V-KGNRVGGVVTNWALVAQNHHTQS-----CMDPNVMEAKIVVSSCGHDGPFGATGVKRLKS 203 (284)
T ss_dssp STTEEEEETEEEEEEE--E-ETTEEEEEEEEEHHHHTCTTTSS-----CCCCEEEEEEEEEECCCSSSTTTTHHHHHHHH
T ss_pred cCCCEEEcCcEEEEEE--e-cCCeEEEEEEeccccccccCccc-----cCceEEEECCEEEECCCCchHHHHHHHHHhhh
Confidence 4689999999999997 3 356666665532100000 0000 13346899999999999876421100 00000
Q ss_pred ----CCcccCCCCe-------eeecCCCCCCcccCceeeeccCCC--------CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 358 ----KGIVPNIRGR-------VLKNISGDSSQVENGLYVCGWLKR--------GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 358 ----~g~~~~~~G~-------v~v~~~~~~~t~~p~vya~Gd~~~--------g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++.. ..|. +.++. ..+..|++|++|+++. +| ..+.++.+|..+|.+|.+.|...
T Consensus 204 ~g~~~~v~~-~~g~~~~~~~~~~v~~---~~~~~p~i~a~G~~~~~~~g~~~~gp--~~~~~~~sG~~~a~~i~~~l~~~ 277 (284)
T 1rp0_A 204 IGMIDHVPG-MKALDMNTAEDAIVRL---TREVVPGMIVTGMEVAEIDGAPRMGP--TFGAMMISGQKAGQLALKALGLP 277 (284)
T ss_dssp TTSSSCCCC-CEEECHHHHHHHHHHH---CEEEETTEEECTHHHHHHHTCEECCS--CCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCcCC-cCCchhhhhhHHHhhc---cccccCCEEEEeeehhhhcCCCCcCh--HHHHHHHhHHHHHHHHHHHhhhh
Confidence 01111 1121 11112 3357799999999862 23 23458899999999999998653
No 102
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.62 E-value=3.1e-07 Score=84.95 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=64.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC-----------------CChHHHHHHHHHH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----------------PETKIVINQFSRV 81 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~-----------------~~~~~~~~~~~~~ 81 (483)
.++|+|||||++|+++|..|++.+ .+|+|||+.+...| +. +.|.. +....+...+.+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g--~~v~lie~~~~~~G-~~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~ 77 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVM-MP--FLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYL 77 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTT-CC--SSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCcCC-cc--cCccccccchhhHHhhhccCCCCCHHHHHHHHHHH
Confidence 479999999999999999999999 99999999843333 11 11110 0223555667777
Q ss_pred HhcC-CeEEEeCeEEce--------EEEecce-eeccCEEEEccCCC
Q 011535 82 VQHE-RCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 82 ~~~~-~v~~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
++.. +++++....... .+.+.++ ...+|+||+|+|..
T Consensus 78 ~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 78 LEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 7775 898875432211 1333333 34699999999984
No 103
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.62 E-value=1.5e-07 Score=97.35 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC----------------CC-------CChH
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP----------------DH-------PETK 72 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p----------------~~-------~~~~ 72 (483)
....++|+||||||+|+++|..|++.| ++|+|||+.+.+++....+..| .+ ....
T Consensus 89 ~~~~~dVvIVGgG~aGl~aA~~La~~G--~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 166 (497)
T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLG--ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR 166 (497)
T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred ccCCCCEEEECccHHHHHHHHHHHHCC--CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence 345789999999999999999999999 9999999998765432111111 00 1124
Q ss_pred HHHHHHHHHHhcCCeEEEeCeEEce-----------EEEe--c-ce---eeccCEEEEccCCC
Q 011535 73 IVINQFSRVVQHERCSFFGNVTLGS-----------SVSL--S-EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~v~~-----------~~~~--~-~~---~~~yd~vvlAtG~~ 118 (483)
++...+.+.+...+++++.++.+.. .+++ . ++ ...+|+||+|+|..
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~ 229 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK 229 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence 5666777777778999998876531 2233 1 22 24689999999984
No 104
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=98.60 E-value=1.5e-07 Score=94.46 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=68.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-----------ecccCC--------CC-----------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-----------RSGVAP--------DH----------- 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-----------~~g~~p--------~~----------- 68 (483)
.++|+|||||+||+++|..|++.+ .+|+|||+.+.+++.+ ..+..| .+
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence 368999999999999999999999 9999999998764311 111100 00
Q ss_pred ----------------------C--ChHHHHHHHHHHHhcCCeEEEeCeEEce------------EEEecceeeccCEEE
Q 011535 69 ----------------------P--ETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLSELRQLYHVVV 112 (483)
Q Consensus 69 ----------------------~--~~~~~~~~~~~~~~~~~v~~~~~~~v~~------------~~~~~~~~~~yd~vv 112 (483)
+ ...++...+.+.+++.|++++.++.+.. .+...+....+|+||
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VV 161 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI 161 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEE
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEE
Confidence 0 2345566677777778899988865521 122333345689999
Q ss_pred EccCCCC
Q 011535 113 LAYGAES 119 (483)
Q Consensus 113 lAtG~~~ 119 (483)
+|||...
T Consensus 162 lAtG~~s 168 (401)
T 2gqf_A 162 VATGGLS 168 (401)
T ss_dssp ECCCCSS
T ss_pred ECCCCcc
Confidence 9999843
No 105
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.56 E-value=2.8e-07 Score=91.78 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=68.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc----e----------eccc-------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL----V----------RSGV------------------- 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl----~----------~~g~------------------- 64 (483)
..++|+|||||++|+++|..|++.+ ++|+|||+.+.+++. . ..|+
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G--~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 87 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNG--WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH 87 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC
Confidence 4579999999999999999999999 999999998765421 0 0000
Q ss_pred ------CC--CC----CChHHHHHHHHHHHhcCCeEEEeCeEEce-----EEEeccee-eccCEEEEccCCC
Q 011535 65 ------AP--DH----PETKIVINQFSRVVQHERCSFFGNVTLGS-----SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 65 ------~p--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~-----~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+ +. .....+...+.+.+...|++++.++.+.. .+++.++. ..+|.||.|+|..
T Consensus 88 g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~ 159 (379)
T 3alj_A 88 NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVG 159 (379)
T ss_dssp TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTT
T ss_pred CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCcc
Confidence 00 00 11245566677777777899998876532 34444443 4699999999984
No 106
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.52 E-value=6.9e-08 Score=90.37 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=37.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..+|+|||||||||+||..|+++| ++|+|||+.+.+||.++
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCccc
Confidence 368999999999999999999999 99999999999988653
No 107
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.47 E-value=3.9e-07 Score=92.94 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee---------------------c--------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR---------------------S-------------- 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~---------------------~-------------- 62 (483)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+++-.. +
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 102 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence 3479999999999999999999998 99999999876543100 0
Q ss_pred ------------cc----------CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce---------EEEeccee-eccCE
Q 011535 63 ------------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSLSELR-QLYHV 110 (483)
Q Consensus 63 ------------g~----------~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~---------~~~~~~~~-~~yd~ 110 (483)
|+ .|.......+...+.+.+++.|++++.++.+.. .+.+.++. ..+|.
T Consensus 103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~ 182 (447)
T 2i0z_A 103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 182 (447)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 00 000001234555666667778999988866521 13334443 46899
Q ss_pred EEEccCCCC
Q 011535 111 VVLAYGAES 119 (483)
Q Consensus 111 vvlAtG~~~ 119 (483)
||+|||...
T Consensus 183 VVlAtGg~s 191 (447)
T 2i0z_A 183 VVIAVGGKS 191 (447)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCCc
Confidence 999999854
No 108
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.40 E-value=1.2e-06 Score=92.26 Aligned_cols=40 Identities=38% Similarity=0.508 Sum_probs=36.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||||+||+++|..|++.| .+|+|||+.+.++|
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G--~~V~vlEk~~~~gg 163 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGG 163 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 34579999999999999999999999 99999999987654
No 109
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.38 E-value=8.6e-07 Score=89.37 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC----CCceec---------c----------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP----FGLVRS---------G---------------------- 63 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~----ggl~~~---------g---------------------- 63 (483)
.++|+|||||+||+++|..|++.| ++|+|||+.+.+ |..+.. |
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGK 82 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred cCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCC
Confidence 479999999999999999999999 999999998632 111100 0
Q ss_pred ------cC------C---CCCChHHHHHHHHHHHhcCCeEEEeCeEEce----------EEEeccee---eccCEEEEcc
Q 011535 64 ------VA------P---DHPETKIVINQFSRVVQHERCSFFGNVTLGS----------SVSLSELR---QLYHVVVLAY 115 (483)
Q Consensus 64 ------~~------p---~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----------~~~~~~~~---~~yd~vvlAt 115 (483)
.. + .+.....+...+.+.+...|++++.++.+.. .+...++. ..+|.||.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~ 162 (421)
T 3nix_A 83 EIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDAS 162 (421)
T ss_dssp EEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECC
T ss_pred eeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 00 0 0012345566677777777999998876531 12223443 4689999999
Q ss_pred CCC
Q 011535 116 GAE 118 (483)
Q Consensus 116 G~~ 118 (483)
|..
T Consensus 163 G~~ 165 (421)
T 3nix_A 163 GYG 165 (421)
T ss_dssp GGG
T ss_pred CCc
Confidence 974
No 110
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.37 E-value=1e-06 Score=92.61 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=34.7
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
..+||+|+||.+ +|..|-- .|..||..++.|++..+.+.+
T Consensus 382 k~~~gLf~AGqi-nGttGYe-EAaaqGl~AG~nAa~~~~~~~ 421 (651)
T 3ces_A 382 KFIQGLFFAGQI-NGTTGYE-EAAAQGLLAGLNAARLSADKE 421 (651)
T ss_dssp SSSBTEEECSGG-GTCCCHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEEe-cCCcChH-HHHHHHHHHHHHHHHHhcCCC
Confidence 458999999998 6788877 899999999999999987753
No 111
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.36 E-value=3.6e-06 Score=81.77 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.++|+|||||+||+++|..|+++.++++|+|||+.+.++|
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG 118 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence 5799999999999999999999822399999999987653
No 112
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.35 E-value=1e-06 Score=91.63 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=39.0
Q ss_pred eeecCCCCCCc-ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 368 VLKNISGDSSQ-VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 368 v~v~~~~~~~t-~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
|..|+. +++ +++|+|++||.+....|++ .|..+|..+|+.|+.++.+.
T Consensus 497 i~~~~~--~~~~~~~gly~~GegaG~a~gi~-~Aa~~G~~~a~~i~~~~~~~ 545 (549)
T 3nlc_A 497 IKRGKD--FQSVNLKGFYPAGEGAGYAGGIL-SAGIDGIKVAEAVARDIVAA 545 (549)
T ss_dssp CCCTTT--TSCTTCBTEEECHHHHTSCCSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCC--ceECCcCCEEEccccCChhhHHH-HHHHHHHHHHHHHHHHhhhc
Confidence 444554 445 8999999999987777777 79999999999999998653
No 113
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.33 E-value=3.1e-06 Score=88.28 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+||||||+|+++|..|+++| ++|+|||+.+.+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G--~~v~viEr~~~~ 40 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQG--VRVLVVERRPGL 40 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSSSC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence 4579999999999999999999999 999999998643
No 114
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.33 E-value=2.4e-06 Score=85.58 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC----C---------------ce----------------e-c
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----G---------------LV----------------R-S 62 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g----g---------------l~----------------~-~ 62 (483)
.++|+|||||++|+++|..|++.+ ++|+|||+.+.+. + +. . .
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQG--HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 469999999999999999999999 9999999986541 0 00 0 0
Q ss_pred c--c--CCC----------CCChHHHHHHHHHHHhcC-CeEEEeCeEEce----------EEEecce-eeccCEEEEccC
Q 011535 63 G--V--APD----------HPETKIVINQFSRVVQHE-RCSFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYG 116 (483)
Q Consensus 63 g--~--~p~----------~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~----------~~~~~~~-~~~yd~vvlAtG 116 (483)
| . .+. ......+...+.+.+.+. +++++.++.+.. .+++.++ ...+|.||.|+|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 0 0 000 012345666777777776 899988865521 3444444 346899999999
Q ss_pred CCC
Q 011535 117 AES 119 (483)
Q Consensus 117 ~~~ 119 (483)
...
T Consensus 164 ~~s 166 (399)
T 2x3n_A 164 IAS 166 (399)
T ss_dssp TTC
T ss_pred CCh
Confidence 843
No 115
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.33 E-value=1.4e-06 Score=86.49 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||||++|+++|..|++.+ .+|+|||+.+..
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~~~ 52 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMG 52 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence 4579999999999999999999999 999999997543
No 116
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.32 E-value=2.2e-06 Score=83.39 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=35.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
.++|+|||||++|+++|..|++.| ++|+|||+.+.++|.
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G--~~V~vlE~~~~~gg~ 40 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGR 40 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGG
T ss_pred CceEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCccc
Confidence 368999999999999999999999 999999999877664
No 117
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.29 E-value=2.9e-06 Score=89.02 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-------------------Cce------------e-cc-c
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-------------------GLV------------R-SG-V 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-------------------gl~------------~-~g-~ 64 (483)
..++|+||||||+|+++|..|++.| ++|+|||+.+.+. |++ . ++ .
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 3469999999999999999999999 9999999986532 110 0 00 0
Q ss_pred ---------C----CC--CCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEe--cce--eeccCEEEEccCC
Q 011535 65 ---------A----PD--HPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSL--SEL--RQLYHVVVLAYGA 117 (483)
Q Consensus 65 ---------~----p~--~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~--~~~--~~~yd~vvlAtG~ 117 (483)
. |. ......+...+.+.+...|++++.++.+.. .+++ .++ ...+|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 0 00 012234556677777767899888876631 2344 344 3579999999998
Q ss_pred CC
Q 011535 118 ES 119 (483)
Q Consensus 118 ~~ 119 (483)
.+
T Consensus 206 ~S 207 (570)
T 3fmw_A 206 RS 207 (570)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 118
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.27 E-value=2.2e-06 Score=83.93 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.8
Q ss_pred CeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCCCCc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~ggl 59 (483)
++|+|||||++|+++|..|++ .+ ++|+|||+.+.+||.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~~~gg~ 42 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKADDSGGR 42 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSSSSCGG
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCCCCccc
Confidence 589999999999999999999 77 999999999877764
No 119
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=98.24 E-value=3.5e-06 Score=84.62 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+.++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~~~ 58 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVKEI 58 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence 34689999999999999999999999 999999998754
No 120
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.23 E-value=3.1e-06 Score=89.05 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||||+||+++|..|++.| ++|+|||+.+.
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G--~~V~LiEr~~~ 57 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLG--HDVTIYERSAF 57 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCC--CCEEEEcCCCC
Confidence 3579999999999999999999999 99999999854
No 121
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.21 E-value=3.2e-06 Score=84.33 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=33.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||+||+++|..|++.| ++|+|||+.+.++
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G--~~V~l~E~~~~~g 40 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIG 40 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 368999999999999999999999 9999999987543
No 122
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.20 E-value=6.9e-06 Score=81.55 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||||++|+++|+.|++++ .+|+|||+...
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~~ 39 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRFI 39 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSST
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 3579999999999999999999998 99999999853
No 123
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.20 E-value=3.7e-06 Score=87.17 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G--~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRG--HRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEccCC
Confidence 479999999999999999999998 9999999986
No 124
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.20 E-value=3.6e-06 Score=84.25 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQP 40 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCC
Confidence 4679999999999999999999999 999999998653
No 125
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.19 E-value=3.9e-06 Score=88.12 Aligned_cols=40 Identities=40% Similarity=0.539 Sum_probs=35.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||||+||+++|..|++.| .+|+|||+.+.++|
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G--~~V~vlEk~~~~gg 158 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGG 158 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 34579999999999999999999999 99999999987654
No 126
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.18 E-value=3.9e-06 Score=82.56 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+|||||++|+++|..|++++ ++|+|||+.+.
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~~ 38 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEG 38 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 469999999999999999999999 99999999863
No 127
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.18 E-value=4.7e-06 Score=82.39 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||++|+++|+.|++++ .+|+|||+.+..
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~~~ 37 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHMPP 37 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 368999999999999999999999 999999998644
No 128
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.18 E-value=1.1e-05 Score=77.92 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=34.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.+|+||||||+|+++|..|++.+|+.+|+|+|+.+.+||
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg 104 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc
Confidence 489999999999999999999833399999999988764
No 129
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.17 E-value=1.2e-05 Score=83.00 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce--------------eccc----------------
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------------RSGV---------------- 64 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~--------------~~g~---------------- 64 (483)
.....++|+||||||+|+++|..|++.| ++|+|||+.+.+.... ..|+
T Consensus 8 ~~~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 85 (499)
T 2qa2_A 8 HHRSDASVIVVGAGPAGLMLAGELRLGG--VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFG 85 (499)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEET
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceec
Confidence 3346689999999999999999999999 9999999986542100 0000
Q ss_pred --------CC-CCC-----ChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce----eeccCEEEEccCCC
Q 011535 65 --------AP-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGAE 118 (483)
Q Consensus 65 --------~p-~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~----~~~yd~vvlAtG~~ 118 (483)
.+ .++ ....+...+.+.+...+++++.++.+.. .+++.+. ...+|+||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 165 (499)
T 2qa2_A 86 GRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR 165 (499)
T ss_dssp TEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred ceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence 00 011 1234556667777777899988876632 2333333 34689999999985
Q ss_pred C
Q 011535 119 S 119 (483)
Q Consensus 119 ~ 119 (483)
+
T Consensus 166 S 166 (499)
T 2qa2_A 166 S 166 (499)
T ss_dssp C
T ss_pred c
Confidence 4
No 130
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.17 E-value=8.6e-06 Score=81.26 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=32.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 68999999999999999999999 99999999863
No 131
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.17 E-value=9.7e-06 Score=83.72 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-----e---------ecccC-----------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-----V---------RSGVA----------------- 65 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-----~---------~~g~~----------------- 65 (483)
...++|+||||||+|+++|..|++.| ++|+|||+.+.+... + ..|+.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAG--VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL 86 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence 45689999999999999999999999 999999998654210 0 00100
Q ss_pred -------C-CCC-----ChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce----eeccCEEEEccCCCC
Q 011535 66 -------P-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGAES 119 (483)
Q Consensus 66 -------p-~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~----~~~yd~vvlAtG~~~ 119 (483)
+ .++ ....+...+.+.+...+++++.++.+.. .+++.+. ...+|+||.|.|..+
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 87 PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0 000 1134555666777777899988876632 2333332 346899999999854
No 132
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.17 E-value=2.8e-06 Score=84.12 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|+|||||++|+++|+.|+ ++ .+|+|+|+.+.++
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G--~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AH--GRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TT--SCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CC--CCEEEEECCCCcc
Confidence 4689999999999999999999 57 9999999986543
No 133
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.15 E-value=9.8e-06 Score=86.99 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||++|+++|..|+++| .+|+|||+.+.+
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~ 307 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRG--WQVTLYCADEAP 307 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCcc
Confidence 3489999999999999999999999 999999997543
No 134
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.14 E-value=2.7e-06 Score=84.67 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=65.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC---CCcee-----------cccC-C------------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVR-----------SGVA-P------------------ 66 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~---ggl~~-----------~g~~-p------------------ 66 (483)
++|+||||||||+++|..|++..|+++|+|||+.+.+ |.... .++. .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 4899999999999999999999233999999998765 21100 0000 0
Q ss_pred --------CC----CChHHHHHHHHHHHhcCCeEEEeCeEEceEEEecce-eeccCEEEEccCCCCC
Q 011535 67 --------DH----PETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSEL-RQLYHVVVLAYGAESD 120 (483)
Q Consensus 67 --------~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~yd~vvlAtG~~~~ 120 (483)
++ ....++...+.+.+...|++++.++.+.. +... ...+|.||.|+|..+.
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~---i~~~~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLE---HGELPLADYDLVVLANGVNHK 144 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCS---GGGCCGGGCSEEEECCGGGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEecc---chhcccccCCEEEECCCCCch
Confidence 11 12245666777777777899998876632 1111 2469999999998433
No 135
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.12 E-value=1.3e-05 Score=81.52 Aligned_cols=92 Identities=25% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|++|+.+|..|++.+ .+|+++|+.+.+.. . ....++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 216 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPLG--------V-YLDKEFTDVLTEEMEANNITIATGETVER 216 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTTT--------T-TCCHHHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCccccc--------c-cCCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 4689999999999999999999999 99999999876422 1 11245667778888888999998865421
Q ss_pred --------EEEecceeeccCEEEEccCCCCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~~~~ 121 (483)
.+..+.....+|.||+|+|. .|+
T Consensus 217 i~~~~~v~~v~~~~~~i~~d~vi~a~G~-~p~ 247 (447)
T 1nhp_A 217 YEGDGRVQKVVTDKNAYDADLVVVAVGV-RPN 247 (447)
T ss_dssp EECSSBCCEEEESSCEEECSEEEECSCE-EES
T ss_pred EEccCcEEEEEECCCEEECCEEEECcCC-CCC
Confidence 12333333469999999997 344
No 136
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.12 E-value=1.4e-06 Score=89.92 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|+|||||++||+||..|++.| .+|+|+|+++.+||...
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------C
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEE
Confidence 479999999999999999999999 99999999999998654
No 137
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.10 E-value=9.5e-06 Score=84.96 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=34.9
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
..+||+|++|.+ +|..|-. .|..||..++.|.+..+.+.+
T Consensus 387 k~~~gLf~AGqi-nGt~Gye-EAaaqGl~AG~nAa~~~~~~~ 426 (637)
T 2zxi_A 387 KKIRGLFHAGNF-NGTTGYE-EAAGQGIVAGINAALRAFGKE 426 (637)
T ss_dssp SSSBTEEECGGG-GTBCSHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCEEEeeec-CCcchHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 348999999999 6788888 799999999999999988753
No 138
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.10 E-value=1.4e-06 Score=86.67 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
+++|+||||||||+++|..|+++| ++|+|||+.+.++
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~~ 40 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIG 40 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCC
Confidence 479999999999999999999999 9999999987643
No 139
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.10 E-value=1.6e-05 Score=83.71 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhc------CCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKA------HQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~------~~~~~v~lie~~~~~g 57 (483)
..+|+||||||||+++|..|++. + ++|+|||+.+.++
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G--~~V~vlEk~~~~g 77 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIG 77 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCC--CcEEEEeCCCCCC
Confidence 36899999999999999999998 6 9999999987654
No 140
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.08 E-value=6.7e-06 Score=82.56 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||++|+++|+.|+++.|+.+|+|||+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 4789999999999999999999922299999999754
No 141
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.08 E-value=1.5e-05 Score=85.60 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||++|+++|+.|+++| .+|+|||+.+.+
T Consensus 263 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~ 299 (689)
T 3pvc_A 263 RCDDIAIIGGGIVSALTALALQRRG--AVVTLYCADAQP 299 (689)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSST
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CcEEEEeCCCcc
Confidence 3579999999999999999999999 999999997544
No 142
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.06 E-value=1.5e-05 Score=78.96 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=68.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. | ...++...+.+.+++.|++++.++.+..
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (367)
T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA 209 (367)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCeec--------c---CCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 379999999999999999999999 9999999987643 2 1235666777888888999999876532
Q ss_pred ---EEEecceeeccCEEEEccCC
Q 011535 98 ---SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+.++++...+|.||+|+|.
T Consensus 210 ~~~~v~~~~g~i~~D~vi~a~G~ 232 (367)
T 1xhc_A 210 NEEGVLTNSGFIEGKVKICAIGI 232 (367)
T ss_dssp CSSEEEETTEEEECSCEEEECCE
T ss_pred EeeEEEECCCEEEcCEEEECcCC
Confidence 34555554679999999997
No 143
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.06 E-value=8.2e-06 Score=83.19 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC------C-ce------eccc------------------CCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF------G-LV------RSGV------------------APD 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g------g-l~------~~g~------------------~p~ 67 (483)
..+|+||||||||+++|..|++.| ++|+|||+.+.+. | .+ ..++ .|.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G--~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRG--LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSS--CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 469999999999999999999999 9999999986531 1 00 0000 011
Q ss_pred C------------CChHHHHHHHHHHHhcCCeEEEeCeEEce------E---EEec---ce---eeccCEEEEccCCC
Q 011535 68 H------------PETKIVINQFSRVVQHERCSFFGNVTLGS------S---VSLS---EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 68 ~------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~------~---~~~~---~~---~~~yd~vvlAtG~~ 118 (483)
. .....+...+.+.+...|++++.++.+.. . +.+. ++ ...+|.||.|+|..
T Consensus 84 ~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~ 161 (453)
T 3atr_A 84 MQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS 161 (453)
T ss_dssp SSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred CceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence 0 11234556666777778899998876531 1 2232 22 34699999999974
No 144
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.04 E-value=2.5e-06 Score=88.32 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=38.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~ 61 (483)
...+|+|||||++||+||..|++. | .+|+|+|+++.+||..+
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G--~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDG--PSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCC--SCEEEEESSSSCCGGGC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCC--CCEEEEECCCCCcCCee
Confidence 357999999999999999999985 7 99999999999999764
No 145
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.04 E-value=1.9e-05 Score=83.03 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=35.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..++|+|||+|+||+++|..|++.+ .+|+|||+.+.++|
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g--~~v~~~e~~~~~~~ 163 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGG 163 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSS--CCEEEECSSSSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 3579999999999999999999999 99999999987664
No 146
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.03 E-value=1.9e-05 Score=82.94 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||+||++||..|++.| .+|+|||+.+
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~ 54 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGG--LHCLLITSDL 54 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCG
T ss_pred CcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEecc
Confidence 4589999999999999999999999 9999999974
No 147
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.01 E-value=2e-05 Score=81.86 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=72.7
Q ss_pred hhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeE
Q 011535 9 SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 9 ~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~ 88 (483)
++.......-+++++|||||+.|+..|..+.+.| .+|+|+++...+ |.+ ..++...+.+.++..+++
T Consensus 213 s~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG--~~VTii~~~~~L---------~~~--D~ei~~~l~~~l~~~gi~ 279 (542)
T 4b1b_A 213 SDDIFSLKKDPGKTLVVGASYVALECSGFLNSLG--YDVTVAVRSIVL---------RGF--DQQCAVKVKLYMEEQGVM 279 (542)
T ss_dssp HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEESSCSS---------TTS--CHHHHHHHHHHHHHTTCE
T ss_pred chhhhccccCCceEEEECCCHHHHHHHHHHHhcC--CeEEEecccccc---------ccc--chhHHHHHHHHHHhhcce
Confidence 3333344556789999999999999999999999 999999875321 332 346777788888889999
Q ss_pred EEeCeEEce--------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 89 FFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 89 ~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
++.+..+.. .+.+.+. ...+|.|++|+|. .|+.
T Consensus 280 ~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR-~Pnt 321 (542)
T 4b1b_A 280 FKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR-KGDI 321 (542)
T ss_dssp EEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred eecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc-cCCc
Confidence 999876532 1233332 2358999999997 4443
No 148
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.99 E-value=2.2e-05 Score=80.13 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=68.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PT--YDSELTAPVAESLKKLGIALHLGHSVEG 237 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987642 21 2235666677777778999999876532
Q ss_pred E----EEec--ce---eeccCEEEEccCCCCCCC
Q 011535 98 S----VSLS--EL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ~----~~~~--~~---~~~yd~vvlAtG~~~~~~ 122 (483)
. +.+. ++ ...+|.||+|+|. .|+.
T Consensus 238 i~~~~v~v~~~~G~~~~i~~D~vv~a~G~-~p~~ 270 (458)
T 1lvl_A 238 YENGCLLANDGKGGQLRLEADRVLVAVGR-RPRT 270 (458)
T ss_dssp EETTEEEEECSSSCCCEECCSCEEECCCE-EECC
T ss_pred EEeCCEEEEECCCceEEEECCEEEECcCC-CcCC
Confidence 1 2222 33 3469999999998 3443
No 149
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=97.97 E-value=3e-05 Score=79.07 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=67.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g--~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~~ 233 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLG--AEVIVLEYMDRIL--------PT--MDLEVSRAAERVFKKQGLTIRTGVRVTA 233 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4689999999999999999999998 9999999987642 22 2245666677777778999998865521
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.||+|+|..
T Consensus 234 i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 234 VVPEAKGARVELEGGEVLEADRVLVAVGRR 263 (455)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred EEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence 1223233 34699999999983
No 150
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.97 E-value=4e-05 Score=78.37 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=67.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 168 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 235 (464)
T 2eq6_A 168 LPKRLLVIGGGAVGLELGQVYRRLG--AEVTLIEYMPEIL--------PQ--GDPETAALLRRALEKEGIRVRTKTKAVG 235 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhcCCEEEcCCEEEE
Confidence 3589999999999999999999998 9999999987642 22 2345666777788888999999876531
Q ss_pred --------EEEec-c--e---eeccCEEEEccCC
Q 011535 98 --------SVSLS-E--L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~-~--~---~~~yd~vvlAtG~ 117 (483)
.+.+. + + ...+|.||+|+|.
T Consensus 236 i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~ 269 (464)
T 2eq6_A 236 YEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR 269 (464)
T ss_dssp EEEETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred EEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence 13333 3 3 3469999999997
No 151
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=97.97 E-value=4.6e-05 Score=75.81 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+..
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i 213 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGG--YQLDVVAPCEQVM--------PGL-LHPAAAKAVQAGLEGLGVRFHLGPVLASL 213 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTT-SCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCcchh--------hcc-cCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 689999999999999999999999 9999999987642 211 1245667777888888999998865421
Q ss_pred -------EEEeccee-eccCEEEEccCC
Q 011535 98 -------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 -------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 214 ~~~~~~~~v~~~~g~~i~~d~vv~a~G~ 241 (384)
T 2v3a_A 214 KKAGEGLEAHLSDGEVIPCDLVVSAVGL 241 (384)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred EecCCEEEEEECCCCEEECCEEEECcCC
Confidence 23344442 469999999997
No 152
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.97 E-value=4.6e-05 Score=76.52 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 212 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVTG 212 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT-TSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCccc--------cc-ccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987642 21 12235666677778888999999866532
Q ss_pred ----EEEecce-eeccCEEEEccCC
Q 011535 98 ----SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ----~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.+.++ ...+|.||+|+|.
T Consensus 213 i~~~~v~~~~g~~i~~D~vi~a~G~ 237 (408)
T 2gqw_A 213 SVDGVVLLDDGTRIAADMVVVGIGV 237 (408)
T ss_dssp EETTEEEETTSCEEECSEEEECSCE
T ss_pred EECCEEEECCCCEEEcCEEEECcCC
Confidence 3444444 3469999999997
No 153
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=97.94 E-value=2.3e-05 Score=78.29 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ 56 (483)
....+|+|||||++|+++|..|++ ++ ..+|+|||+.+..
T Consensus 19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G-~~~V~vlE~~~~~ 58 (405)
T 2gag_B 19 KKSYDAIIVGGGGHGLATAYFLAKNHG-ITNVAVLEKGWLA 58 (405)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHHHC-CCCEEEECSSSTT
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHhcC-CCcEEEEeCCCCC
Confidence 345799999999999999999999 75 2699999998743
No 154
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.93 E-value=5.9e-05 Score=77.61 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+.
T Consensus 192 ~~~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 260 (490)
T 2bc0_A 192 KDIKRVAVVGAGYIGVELAEAFQRKG--KEVVLIDVVDTCL--------AG-YYDRDLTDLMAKNMEEHGIQLAFGETVK 260 (490)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEETCCEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEEcccchh--------hh-HHHHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence 35789999999999999999999998 9999999987642 21 1224566777788888899999986553
Q ss_pred e--------EEEecceeeccCEEEEccCC
Q 011535 97 S--------SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~~~~~yd~vvlAtG~ 117 (483)
. .+.++.....+|.||+|+|.
T Consensus 261 ~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~ 289 (490)
T 2bc0_A 261 EVAGNGKVEKIITDKNEYDVDMVILAVGF 289 (490)
T ss_dssp EEECSSSCCEEEESSCEEECSEEEECCCE
T ss_pred EEEcCCcEEEEEECCcEEECCEEEECCCC
Confidence 2 12332223469999999997
No 155
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=97.91 E-value=4.8e-05 Score=77.69 Aligned_cols=93 Identities=12% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 164 ~~~~~vvVvGgG~~g~e~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~ 231 (463)
T 2r9z_A 164 QQPKRVAIIGAGYIGIELAGLLRSFG--SEVTVVALEDRLL--------FQ--FDPLLSATLAENMHAQGIETHLEFAVA 231 (463)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEESSCCEE
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999887542 21 123555667777888899999886542
Q ss_pred --------eEEEeccee--eccCEEEEccCCCCCCC
Q 011535 97 --------SSVSLSELR--QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 97 --------~~~~~~~~~--~~yd~vvlAtG~~~~~~ 122 (483)
..+.+.++. ..+|.||+|+|. .|+.
T Consensus 232 ~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~ 266 (463)
T 2r9z_A 232 ALERDAQGTTLVAQDGTRLEGFDSVIWAVGR-APNT 266 (463)
T ss_dssp EEEEETTEEEEEETTCCEEEEESEEEECSCE-EESC
T ss_pred EEEEeCCeEEEEEeCCcEEEEcCEEEECCCC-CcCC
Confidence 134444554 579999999998 3443
No 156
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.91 E-value=5.2e-05 Score=77.53 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. | ...++...+.+.+++.|++++.++.+..
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 241 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLG--SKVTVLARNTLFF--------R---EDPAIGEAVTAAFRAEGIEVLEHTQASQ 241 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------T---SCHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEECCccC--------C---CCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 4689999999999999999999999 9999999987542 3 1235667777788888999998865522
Q ss_pred --------EEEecceeeccCEEEEccCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+.++.....+|.||+|+|..
T Consensus 242 i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 242 VAHMDGEFVLTTTHGELRADKLLVATGRT 270 (467)
T ss_dssp EEEETTEEEEEETTEEEEESEEEECSCEE
T ss_pred EEEeCCEEEEEECCcEEEcCEEEECCCCC
Confidence 133334445799999999983
No 157
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=97.89 E-value=0.00011 Score=74.86 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=70.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |.. ...++...+.+.+++.|++++.++.+..
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 214 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVKMK--KTVHVFESLENLL--------PKY-FDKEMVAEVQKSLEKQAVIFHFEETVLG 214 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTT-CCHHHHHHHHHHHHTTTEEEEETCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCccc--------ccc-CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4589999999999999999999999 9999999987642 211 1245667788888889999998866532
Q ss_pred --------EEEecceeeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+++....+|.||+|+|. .|..
T Consensus 215 i~~~~~~v~v~~~~g~i~aD~Vv~A~G~-~p~~ 246 (452)
T 3oc4_A 215 IEETANGIVLETSEQEISCDSGIFALNL-HPQL 246 (452)
T ss_dssp EEECSSCEEEEESSCEEEESEEEECSCC-BCCC
T ss_pred EEccCCeEEEEECCCEEEeCEEEECcCC-CCCh
Confidence 13344445579999999998 3433
No 158
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.89 E-value=1.3e-05 Score=79.25 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-CCCCCcee
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGLVR 61 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~~~ggl~~ 61 (483)
....++|+|||||++||+||..|.+.+ ++|+|+|+. +.+||.+.
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~ 85 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIK 85 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCC
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCcee
Confidence 345689999999999999999999999 999999999 88888643
No 159
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.88 E-value=8.5e-05 Score=75.65 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNALAKG 236 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987642 22 2245666777778888999999876522
Q ss_pred --------EEEec---ce-eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~-~~~yd~vvlAtG~ 117 (483)
.+.+. +. ...+|.||+|+|.
T Consensus 237 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 268 (455)
T 1ebd_A 237 AEEREDGVTVTYEANGETKTIDADYVLVTVGR 268 (455)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred EEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence 12222 22 2469999999998
No 160
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=97.88 E-value=6.5e-06 Score=84.02 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||++||+||.+|++.| |+.+|+|+|+.+.+||...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 479999999999999999999987 6789999999998887643
No 161
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=97.88 E-value=1e-05 Score=80.81 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+++|+|||||||||++|..|+++| ++|+|||+.+.+
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~~~ 36 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNSAA 36 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCCCC
Confidence 368999999999999999999999 999999998754
No 162
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=97.88 E-value=1e-05 Score=81.53 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=36.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||++||+||..|++.+ .+|+|+|+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSAMIGGRFT 40 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCCceeE
Confidence 58999999999999999999999 99999999999887643
No 163
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.87 E-value=5.1e-05 Score=77.87 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|.+.+ .+|+++++.+.+.. . ...++...+.+.+++.|++++.++.+..
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~--------~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 252 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELG--KKVRMIERNDHIGT--------I--YDGDMAEYIYKEADKHHIEILTNENVKA 252 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTT--CEEEEECCGGGTTS--------S--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCchhh--------c--CCHHHHHHHHHHHHHcCcEEEcCCEEEE
Confidence 5689999999999999999999998 99999998875432 1 1245666777788888999998865521
Q ss_pred --------EEEecceeeccCEEEEccCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+.++.....+|.||+|+|.
T Consensus 253 i~~~~~v~~v~~~~~~i~~D~vi~a~G~ 280 (480)
T 3cgb_A 253 FKGNERVEAVETDKGTYKADLVLVSVGV 280 (480)
T ss_dssp EEESSBEEEEEETTEEEECSEEEECSCE
T ss_pred EEcCCcEEEEEECCCEEEcCEEEECcCC
Confidence 12333334579999999997
No 164
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=97.87 E-value=1.7e-05 Score=78.97 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~ 98 (483)
.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+...
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i 214 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSG--TPASIGIILEYPL--------ERQ-LDRDGGLFLKDKLDRLGIKIYTNSNFEEM 214 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSC--------TTT-SCHHHHHHHHHHHHTTTCEEECSCCGGGC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccc--------hhh-cCHHHHHHHHHHHHhCCCEEEeCCEEEEc
Confidence 579999999999999999999999 9999999987642 211 12356667778888889999998765321
Q ss_pred EEecceeeccCEEEEccCC
Q 011535 99 VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 99 ~~~~~~~~~yd~vvlAtG~ 117 (483)
.....+|.||+|+|.
T Consensus 215 ----g~~~~~D~vv~a~G~ 229 (385)
T 3klj_A 215 ----GDLIRSSCVITAVGV 229 (385)
T ss_dssp ----HHHHHHSEEEECCCE
T ss_pred ----CeEEecCeEEECcCc
Confidence 122469999999997
No 165
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=97.86 E-value=8e-05 Score=74.85 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ....++...+.+.++..|++++.++.+..
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 220 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFG--VNVTLLEALPRVL--------AR-VAGEALSEFYQAEHRAHGVDLRTGAAMDCI 220 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCchh--------hh-hcCHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence 689999999999999999999999 9999999987642 11 12245667778888888999998866521
Q ss_pred --------EEEeccee-eccCEEEEccCCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 221 ~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~ 250 (415)
T 3lxd_A 221 EGDGTKVTGVRMQDGSVIPADIVIVGIGIV 250 (415)
T ss_dssp EESSSBEEEEEESSSCEEECSEEEECSCCE
T ss_pred EecCCcEEEEEeCCCCEEEcCEEEECCCCc
Confidence 23444443 4699999999983
No 166
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.86 E-value=3.6e-05 Score=78.04 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=68.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-- 96 (483)
.++|+|||||+.|+.+|..+.+.+ .+|+|+++.+.+. |.. ..++...+.+.++..+++++.+..+.
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~ll--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~~ 214 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERG--LHPTLIHRSDKIN--------KLM--DADMNQPILDELDKREIPYRLNEEINAI 214 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSCCS--------TTS--CGGGGHHHHHHHHHTTCCEEESCCEEEE
T ss_pred CcEEEEECCccchhhhHHHHHhcC--Ccceeeeeecccc--------ccc--cchhHHHHHHHhhccceEEEeccEEEEe
Confidence 579999999999999999999999 9999999987642 221 12344556677777899999987763
Q ss_pred --eEEEeccee-eccCEEEEccCCCCCC
Q 011535 97 --SSVSLSELR-QLYHVVVLAYGAESDR 121 (483)
Q Consensus 97 --~~~~~~~~~-~~yd~vvlAtG~~~~~ 121 (483)
..+.++++. ..+|.|++|+|. .|+
T Consensus 215 ~~~~v~~~~g~~~~~D~vl~a~G~-~Pn 241 (437)
T 4eqs_A 215 NGNEITFKSGKVEHYDMIIEGVGT-HPN 241 (437)
T ss_dssp ETTEEEETTSCEEECSEEEECCCE-EES
T ss_pred cCCeeeecCCeEEeeeeEEEEece-ecC
Confidence 245555554 469999999997 343
No 167
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.85 E-value=7.1e-05 Score=76.84 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 251 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNTKTVA 251 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------cc--cCHHHHHHHHHHHHhcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987642 22 2345667778888888999999876521
Q ss_pred --------EEEecc----e-eeccCEEEEccCC
Q 011535 98 --------SVSLSE----L-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~----~-~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 252 i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 252 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 233333 2 2469999999997
No 168
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=97.83 E-value=1.3e-05 Score=80.69 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=36.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
++|+|||||.+||+||.+|++++ .+|+|+|+.+.+||..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~ 39 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRF 39 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCce
Confidence 58999999999999999999999 9999999999988764
No 169
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=82.01 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=37.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||++||+||++|++.+ . +|+|+|+.+.+||...
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~~~GG~~~ 44 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSERLGGWIR 44 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSSSSBTTCC
T ss_pred CceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCCCCCCceE
Confidence 369999999999999999999998 7 9999999999888764
No 170
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.82 E-value=0.00012 Score=75.08 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 182 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 249 (478)
T 1v59_A 182 IPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQIG--------AS--MDGEVAKATQKFLKKQGLDFKLSTKVIS 249 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987643 21 1245666777788888999999876532
Q ss_pred ----------EEEec-----ce-eeccCEEEEccCC
Q 011535 98 ----------SVSLS-----EL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ----------~~~~~-----~~-~~~yd~vvlAtG~ 117 (483)
.+.+. +. ...+|.||+|+|.
T Consensus 250 i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 285 (478)
T 1v59_A 250 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR 285 (478)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred EEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence 12222 11 2469999999997
No 171
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.80 E-value=0.00012 Score=75.38 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=68.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 196 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~v~~~~~v~ 263 (491)
T 3urh_A 196 KVPASMIVVGGGVIGLELGSVWARLG--AKVTVVEFLDTIL--------GG--MDGEVAKQLQRMLTKQGIDFKLGAKVT 263 (491)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecccccc--------cc--CCHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 45689999999999999999999999 9999999887642 22 234566777778888899999987653
Q ss_pred e--------EEEecc---e---eeccCEEEEccCC
Q 011535 97 S--------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.||+|+|.
T Consensus 264 ~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 264 GAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp EEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred EEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 2 133321 2 3469999999997
No 172
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.80 E-value=2e-05 Score=81.02 Aligned_cols=42 Identities=33% Similarity=0.479 Sum_probs=38.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...++|+|||||+|||+||..|.+.+ .+|+|+|+.+.+||..
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~ 50 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRV 50 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCce
Confidence 35689999999999999999999999 9999999999999864
No 173
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=97.80 E-value=8.5e-05 Score=75.56 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 165 ~~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 232 (450)
T 1ges_A 165 ALPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PS--FDPMISETLVEVMNAEGPQLHTNAIPK 232 (450)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhcC--CEEEEEEeCCchh--------hh--hhHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999987642 22 123566667777777899999886542
Q ss_pred e---------EEEecce-eeccCEEEEccCC
Q 011535 97 S---------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+.++ ...+|.||+|+|.
T Consensus 233 ~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~ 263 (450)
T 1ges_A 233 AVVKNTDGSLTLELEDGRSETVDCLIWAIGR 263 (450)
T ss_dssp EEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence 1 2334444 2469999999998
No 174
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=9.2e-05 Score=75.96 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++++|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 183 ~~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~ 250 (479)
T 2hqm_A 183 EQPKKVVVVGAGYIGIELAGVFHGLG--SETHLVIRGETVL--------RK--FDECIQNTITDHYVKEGINVHKLSKIV 250 (479)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEeCCccc--------cc--cCHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence 35689999999999999999999999 9999999987642 22 123566667777777899999886542
Q ss_pred ----------eEEEecce--eeccCEEEEccCCCCCCC
Q 011535 97 ----------SSVSLSEL--RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 97 ----------~~~~~~~~--~~~yd~vvlAtG~~~~~~ 122 (483)
..+.+.++ ...+|.||+|+|. .|..
T Consensus 251 ~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~ 287 (479)
T 2hqm_A 251 KVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR-KSHL 287 (479)
T ss_dssp EEEECC-CCCEEEEETTSCEEEEESEEEECSCE-EECC
T ss_pred EEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC-CCcc
Confidence 12444454 3469999999997 3443
No 175
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.78 E-value=0.0001 Score=75.98 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gv~i~~~~~v~~i 243 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRIL--------RK--FDESVINVLENDMKKNNINIVTFADVVEI 243 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHcC--CeEEEEecCCccC--------cc--cchhhHHHHHHHHHhCCCEEEECCEEEEE
Confidence 789999999999999999999998 9999999987642 22 1235666777788888999998865421
Q ss_pred --------EEEeccee--eccCEEEEccCCC
Q 011535 98 --------SVSLSELR--QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~--~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 244 ~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~ 274 (500)
T 1onf_A 244 KKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS 274 (500)
T ss_dssp EESSTTCEEEEETTSCEEEEESEEEECCCBC
T ss_pred EEcCCceEEEEECCCcEEEECCEEEECCCCC
Confidence 23444443 4799999999983
No 176
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.78 E-value=0.00015 Score=74.56 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++.. ++++.++.+
T Consensus 171 ~~~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~-V~i~~~~~v 237 (492)
T 3ic9_A 171 NDLPKSVAVFGPGVIGLELGQALSRLG--VIVKVFGRSGSVA--------NL--QDEEMKRYAEKTFNEE-FYFDAKARV 237 (492)
T ss_dssp SSCCSEEEEESSCHHHHHHHHHHHHTT--CEEEEECCTTCCT--------TC--CCHHHHHHHHHHHHTT-SEEETTCEE
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------cc--CCHHHHHHHHHHHhhC-cEEEECCEE
Confidence 345789999999999999999999999 9999999988642 21 1235666677777766 999988765
Q ss_pred ce--------EEEec--ce---eeccCEEEEccCCCCCC
Q 011535 96 GS--------SVSLS--EL---RQLYHVVVLAYGAESDR 121 (483)
Q Consensus 96 ~~--------~~~~~--~~---~~~yd~vvlAtG~~~~~ 121 (483)
.. .+.+. ++ ...+|.||+|+|. .|.
T Consensus 238 ~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~-~p~ 275 (492)
T 3ic9_A 238 ISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR-KAN 275 (492)
T ss_dssp EEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC-EES
T ss_pred EEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC-ccC
Confidence 32 13332 23 3469999999998 344
No 177
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=97.78 E-value=0.00012 Score=73.32 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=68.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+..
T Consensus 141 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 209 (404)
T 3fg2_P 141 DKKHVVVIGAGFIGLEFAATARAKG--LEVDVVELAPRVM--------AR-VVTPEISSYFHDRHSGAGIRMHYGVRATE 209 (404)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCcch--------hh-ccCHHHHHHHHHHHHhCCcEEEECCEEEE
Confidence 3689999999999999999999999 9999999987642 11 12245667777888888999998865421
Q ss_pred ---------EEEeccee-eccCEEEEccCC
Q 011535 98 ---------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 210 i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 210 IAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp EEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred EEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 24444443 469999999998
No 178
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=97.77 E-value=1.6e-05 Score=80.35 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=36.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
++|+|||||++|++||..|++.| .+|+|+|+.+.+||..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~ 40 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRA 40 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTC
T ss_pred CCEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCee
Confidence 58999999999999999999999 9999999988887754
No 179
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=97.77 E-value=1.9e-05 Score=80.51 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||..|++.| .+|+|+|+++.+||...
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~ 51 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA 51 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCcccc
Confidence 4579999999999999999999999 99999999999999764
No 180
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=97.76 E-value=0.00013 Score=75.83 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=68.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce--
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-- 97 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~-- 97 (483)
++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 282 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTRIE 282 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccc--------cc--ccHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence 89999999999999999999999 9999999987642 22 2345667778888888999999876521
Q ss_pred ----------EEEecce--eeccCEEEEccCCC
Q 011535 98 ----------SVSLSEL--RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ----------~~~~~~~--~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.||+|+|..
T Consensus 283 ~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~ 315 (523)
T 1mo9_A 283 EDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315 (523)
T ss_dssp ECTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred EcCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence 2344454 34699999999983
No 181
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=97.76 E-value=0.00015 Score=74.68 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
...++++|||||+.|+.+|..|.+. + .+|+++++.+.+. |. ...++...+.+.+++.|++|+.++
T Consensus 185 ~~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~ 252 (490)
T 1fec_A 185 EAPKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGDMIL--------RG--FDSELRKQLTEQLRANGINVRTHE 252 (490)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETC
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhhccCc--CeEEEEEcCCCcc--------cc--cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 3468999999999999999999999 7 9999999987642 22 123566777788888899999986
Q ss_pred EEce---------EEEecce-eeccCEEEEccCC
Q 011535 94 TLGS---------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 94 ~v~~---------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.. .+.+.++ ...+|.||+|+|.
T Consensus 253 ~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 253 NPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp CEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 5521 2334444 3469999999997
No 182
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.76 E-value=0.00017 Score=73.91 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC-CCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP-DHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p-~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. | . ...++...+.+.+++.|++++.++.+.
T Consensus 177 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 244 (474)
T 1zmd_A 177 VPEKMVVIGAGVIGVELGSVWQRLG--ADVTAVEFLGHVG--------GVG--IDMEISKNFQRILQKQGFKFKLNTKVT 244 (474)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------CSS--CCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEeccCccC--------Ccc--cCHHHHHHHHHHHHHCCCEEEeCceEE
Confidence 4689999999999999999999999 9999999987542 2 1 124566677778888899999987663
Q ss_pred e---------EEEe-----cce-eeccCEEEEccCC
Q 011535 97 S---------SVSL-----SEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~-----~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+ .+. ...+|.||+|+|.
T Consensus 245 ~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~ 280 (474)
T 1zmd_A 245 GATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280 (474)
T ss_dssp EEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred EEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence 2 1221 121 2469999999997
No 183
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.76 E-value=0.00018 Score=73.66 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=67.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 185 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~~~~~l~~~gv~i~~~~~v~ 252 (478)
T 3dk9_A 185 ELPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL--------RS--FDSMISTNCTEELENAGVEVLKFSQVK 252 (478)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred hcCccEEEECCCHHHHHHHHHHHHcC--CeEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999887642 22 124566677778888899999987652
Q ss_pred e----------EEEecc--------eeeccCEEEEccCC
Q 011535 97 S----------SVSLSE--------LRQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~----------~~~~~~--------~~~~yd~vvlAtG~ 117 (483)
. .+.+.+ ....+|.||+|+|.
T Consensus 253 ~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 253 EVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp EEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred EEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 1 123332 23469999999997
No 184
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=97.75 E-value=1.9e-05 Score=82.04 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+|||||+|||+||..|++.| .+|+|+|+++.+||...
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTY 44 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCC
T ss_pred CceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcee
Confidence 468999999999999999999998 99999999999988754
No 185
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=97.75 E-value=2.3e-05 Score=78.06 Aligned_cols=43 Identities=33% Similarity=0.340 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
....+|+|||||++|+++|..|++.+ .+|+|+|+.+.+||.+.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSG--QRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCC--CceEEEeccCCCCCccc
Confidence 34679999999999999999999998 99999999999888754
No 186
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=97.75 E-value=0.0001 Score=80.97 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
..+|+|||||++|+++|+.|++++ . +|+|||+.+.
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G--~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCC
Confidence 579999999999999999999998 8 9999999875
No 187
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.75 E-value=2.4e-05 Score=80.08 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.++|+|||||++||++|..|++.+++.+|+|+|+.+.+||..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~ 45 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV 45 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence 579999999999999999999998889999999998888754
No 188
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.75 E-value=0.00019 Score=73.49 Aligned_cols=89 Identities=15% Similarity=0.287 Sum_probs=68.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..|++++.++.+.
T Consensus 178 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~v~~~~~v~ 245 (476)
T 3lad_A 178 NVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGARVT 245 (476)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEECCEEE
Confidence 35689999999999999999999999 9999999987542 22 234566777788888899999987653
Q ss_pred e--------EEEecc--e--eeccCEEEEccCC
Q 011535 97 S--------SVSLSE--L--RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~--~--~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.||+|+|.
T Consensus 246 ~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 246 GTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp EEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred EEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 2 133332 1 3469999999997
No 189
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=97.75 E-value=6e-05 Score=75.68 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=67.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.... ...++...+.+.+++.|++++.++.+..
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 210 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLG--LSVTILEAGDELLVRV---------LGRRIGAWLRGLLTELGVQVELGTGVVG 210 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSHHH---------HCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccchhh---------cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987643110 1134566677777788999998876532
Q ss_pred --------EEEeccee-eccCEEEEccCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 211 i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~ 239 (410)
T 3ef6_A 211 FSGEGQLEQVMASDGRSFVADSALICVGA 239 (410)
T ss_dssp EECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred EeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence 24444443 469999999998
No 190
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.74 E-value=1.4e-05 Score=81.21 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.++|+|||||++||+||..|++.+ .+|+|+|+++.+||..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAG--LSVAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCCCCCce
Confidence 469999999999999999999998 9999999999998865
No 191
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.74 E-value=0.00015 Score=74.10 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIVEFLPRAL--------PN--EDADVSKEIEKQFKKLGVTILTATKVES 237 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEECSCEEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCcEEEE
Confidence 4689999999999999999999999 9999999987542 32 2245666677777888999999876532
Q ss_pred --------EEEec-ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS-EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~-~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 238 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 269 (464)
T 2a8x_A 238 IADGGSQVTVTVTKDGVAQELKAEKVLQAIGF 269 (464)
T ss_dssp EEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred EEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence 12332 22 3469999999997
No 192
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=97.74 E-value=0.00016 Score=74.57 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
...++++|||+|+.|+.+|..|.+. + .+|+++++.+.+. |. ...++...+.+.++..|++|+.++
T Consensus 189 ~~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~ 256 (495)
T 2wpf_A 189 EPPRRVLTVGGGFISVEFAGIFNAYKPPG--GKVTLCYRNNLIL--------RG--FDETIREEVTKQLTANGIEIMTNE 256 (495)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEESC
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 3468999999999999999999999 7 9999999987642 22 123566677778888899999986
Q ss_pred EEce---------EEEecce-eeccCEEEEccCC
Q 011535 94 TLGS---------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 94 ~v~~---------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.. .+.+.++ ...+|.||+|+|.
T Consensus 257 ~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 257 NPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp CEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 5521 2334444 3469999999997
No 193
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=97.74 E-value=2.9e-05 Score=78.23 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||..|++.++ .+|+|+|+.+.+||.+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCH 47 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCccc
Confidence 46799999999999999999999862 69999999999988654
No 194
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.72 E-value=0.00019 Score=73.29 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHH-hcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~v~ 96 (483)
.+++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+ ++.|++++.++.+.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~~gv~i~~~~~v~ 240 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLG--AEVTVVEFAPRCA--------PT--LDEDVTNALVGALAKNEKMKFMTSTKVV 240 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCCEEECSCEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CEEEEEecCCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence 4689999999999999999999999 9999999987642 22 2345666777778 88899999987652
Q ss_pred e--------EEEec--ce---eeccCEEEEccCC
Q 011535 97 S--------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
. .+.+. ++ ...+|.||+|+|.
T Consensus 241 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~ 274 (468)
T 2qae_A 241 GGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR 274 (468)
T ss_dssp EEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred EEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence 1 22332 33 3469999999997
No 195
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=97.72 E-value=2.5e-05 Score=78.16 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=38.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+|||||++||++|..|++. + .+|+|+|+.+.+||...
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g--~~v~v~E~~~~~GG~~~ 48 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLD--KRVLVLERRPHIGGNAY 48 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSC--CCEEEECSSSSSSGGGC
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeee
Confidence 57999999999999999999999 8 99999999999988754
No 196
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.71 E-value=0.00017 Score=73.40 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |.. ...++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 216 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQN--YNVNLIDGHERVL--------YKY-FDKEFTDILAKDYEAHGVNLVLGSKVAA 216 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSTT--------TTT-SCHHHHHHHHHHHHHTTCEEEESSCEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcC--CEEEEEEcCCchh--------hhh-hhhhHHHHHHHHHHHCCCEEEcCCeeEE
Confidence 4689999999999999999999998 9999999987542 211 2235666777888888999999865522
Q ss_pred E---------EEecceeeccCEEEEccCC
Q 011535 98 S---------VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~---------~~~~~~~~~yd~vvlAtG~ 117 (483)
. +..+.....+|.||+|+|.
T Consensus 217 i~~~~~~v~~v~~~g~~i~~D~vv~a~G~ 245 (452)
T 2cdu_A 217 FEEVDDEIITKTLDGKEIKSDIAILCIGF 245 (452)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence 1 2222223469999999997
No 197
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.70 E-value=2.4e-05 Score=80.11 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=37.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...++|+|||||++||+||..|++.| .+|+|+|+.+.+||.+.
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG 56 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceee
Confidence 35689999999999999999999998 99999999999988653
No 198
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.69 E-value=0.0002 Score=73.01 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=69.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
....++++|||+|+.|+.+|..+.+.+ .+|+++++.+.+. +. ...++...+.+.++..|++++.++.+
T Consensus 167 ~~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vt~v~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v 234 (463)
T 4dna_A 167 PALPESILIAGGGYIAVEFANIFHGLG--VKTTLIYRGKEIL--------SR--FDQDMRRGLHAAMEEKGIRILCEDII 234 (463)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 345789999999999999999999998 9999999887532 22 12356677788888889999998655
Q ss_pred ce---------EEE-ecceeeccCEEEEccCC
Q 011535 96 GS---------SVS-LSELRQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~---------~~~-~~~~~~~yd~vvlAtG~ 117 (483)
.. .+. +.++...+|.||+|+|.
T Consensus 235 ~~i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~ 266 (463)
T 4dna_A 235 QSVSADADGRRVATTMKHGEIVADQVMLALGR 266 (463)
T ss_dssp EEEEECTTSCEEEEESSSCEEEESEEEECSCE
T ss_pred EEEEEcCCCEEEEEEcCCCeEEeCEEEEeeCc
Confidence 21 244 44444569999999997
No 199
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.68 E-value=3e-05 Score=78.46 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 4579999999999999999999999 9999999886
No 200
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.67 E-value=0.00014 Score=74.31 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 243 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKTKVVG 243 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--ccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987642 32 2245666777788888999999876532
Q ss_pred --------EEEec---ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 277 (470)
T 1dxl_A 244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR 277 (470)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred EEEcCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence 22332 22 3469999999998
No 201
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=97.67 E-value=0.00029 Score=67.72 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ...+...+.+.+++.|++++.++.+..
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~~~~l~~~l~~~gv~i~~~~~v~~ 209 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------A----EKILIKRLMDKVENGNIILHTNRTLEE 209 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------C----CHHHHHHHHHHHHTSSEEEECSCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCccc--------c----CHHHHHHHHHhcccCCeEEEcCceeEE
Confidence 4689999999999999999999998 9999999876531 1 134455666677778999998876522
Q ss_pred ---------EEEecc----e---eeccCEEEEccCC
Q 011535 98 ---------SVSLSE----L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~----~---~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 210 i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~ 245 (320)
T 1trb_A 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 245 (320)
T ss_dssp EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred EEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence 133332 2 3469999999997
No 202
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.66 E-value=0.00021 Score=72.24 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=66.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 216 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVL--------ERV-TAPPVSAFYEHLHREAGVDIRTGTQVCG 216 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TTT-SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCccc--------cch-hhHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 4689999999999999999999999 9999999887642 111 1234556677777778999998865421
Q ss_pred -----------EEEeccee-eccCEEEEccCC
Q 011535 98 -----------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 -----------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 217 FEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp EEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred EEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 13333332 469999999997
No 203
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=97.64 E-value=4.9e-05 Score=75.96 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 61 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDNDR 61 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCc
Confidence 4579999999999999999999999 999999998653
No 204
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.64 E-value=3.2e-05 Score=79.64 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=37.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||+|||+||..|.+.+ ++|+|+|+.+.+||.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcce
Confidence 79999999999999999999999 99999999999988653
No 205
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=97.64 E-value=2.7e-05 Score=80.74 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..++|+|||||+|||+||..|.+.| ..+|+|+|+.+.+||.+
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCce
Confidence 3479999999999999999999986 37999999999999865
No 206
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=97.64 E-value=0.00021 Score=75.34 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=68.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 253 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERG--IEVTLVEMANQVM--------PP--IDYEMAAYVHEHMKNHDVELVFEDGVDA 253 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccc--------cc--CCHHHHHHHHHHHHHcCCEEEECCeEEE
Confidence 4689999999999999999999999 9999999877532 22 2345667777888888999998876532
Q ss_pred ------EEEeccee-eccCEEEEccCC
Q 011535 98 ------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 ------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 254 i~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (588)
T 3ics_A 254 LEENGAVVRLKSGSVIQTDMLILAIGV 280 (588)
T ss_dssp EEGGGTEEEETTSCEEECSEEEECSCE
T ss_pred EecCCCEEEECCCCEEEcCEEEEccCC
Confidence 24444443 469999999997
No 207
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.63 E-value=4.1e-05 Score=79.00 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..++|+|||||++||++|..|++.+ ++|+|+|+.+.+||.+
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 52 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKL 52 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCce
Confidence 3579999999999999999999999 9999999999998864
No 208
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=97.63 E-value=0.00028 Score=72.67 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=68.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~V~~ 248 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL--------PY--EDADAALVLEESFAERGVRLFKNARAAS 248 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTT--CCEEEECSSSSSS--------CC--SSHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999998 9999999887642 22 2335667778888888999999866522
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+...++ ...+|.||+|+|..
T Consensus 249 i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~ 278 (499)
T 1xdi_A 249 VTRTGAGVLVTMTDGRTVEGSHALMTIGSV 278 (499)
T ss_dssp EEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred EEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence 1222333 34699999999983
No 209
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=97.62 E-value=0.00027 Score=72.55 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=68.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 189 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~ 256 (484)
T 3o0h_A 189 KLPKSIVIVGGGYIGVEFANIFHGLG--VKTTLLHRGDLIL--------RN--FDYDLRQLLNDAMVAKGISIIYEATVS 256 (484)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEESSCCEE
T ss_pred hcCCcEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 45789999999999999999999998 9999999887542 22 123566667777777899999886653
Q ss_pred e--------EEEecce-eeccCEEEEccCC
Q 011535 97 S--------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+.++ ...+|.||+|+|.
T Consensus 257 ~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 257 QVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp EEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred EEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 2 2444444 3469999999997
No 210
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.61 E-value=5.1e-05 Score=75.51 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=37.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+|||||++|+++|..|.+.+ .+|+|+|+.+.+||.+.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecCCcCCccc
Confidence 469999999999999999999998 99999999999888654
No 211
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=97.61 E-value=5.8e-05 Score=76.35 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~gg 58 (483)
...+|+|||||++|+++|+.|++++ . +|+|+|+.+.+++
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~~~~~ 44 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYPVPSA 44 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSCSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCCC
Confidence 3579999999999999999999999 8 9999999987654
No 212
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.60 E-value=0.0004 Score=70.46 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.+++. ++++.++.+..
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~-v~i~~~~~v~~ 214 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQG--KNVTMIVRGERVL--------RRS-FDKEVTDILEEKLKKH-VNLRLQEITMK 214 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TTT-SCHHHHHHHHHHHTTT-SEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccc--------hhh-cCHHHHHHHHHHHHhC-cEEEeCCeEEE
Confidence 4579999999999999999999999 9999999987642 210 1235666777777777 99988866532
Q ss_pred E--------EEecceeeccCEEEEccCC
Q 011535 98 S--------VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~--------~~~~~~~~~yd~vvlAtG~ 117 (483)
. +..+.....+|.||+|+|.
T Consensus 215 i~~~~~v~~v~~~g~~i~~D~Vv~a~G~ 242 (449)
T 3kd9_A 215 IEGEERVEKVVTDAGEYKAELVILATGI 242 (449)
T ss_dssp EECSSSCCEEEETTEEEECSEEEECSCE
T ss_pred EeccCcEEEEEeCCCEEECCEEEEeeCC
Confidence 1 2222333469999999997
No 213
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=97.60 E-value=5.3e-05 Score=78.06 Aligned_cols=42 Identities=38% Similarity=0.475 Sum_probs=38.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..+++|+|||||++||++|..|.+.| .+|+|+|+.+.+||.+
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~ 72 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRV 72 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCce
Confidence 34689999999999999999999999 9999999999988864
No 214
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.60 E-value=4.2e-05 Score=75.61 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=36.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
++|+|||||++|+++|..|++.+ .+|+|+|+.+.+||..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~ 40 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNA 40 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGG
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCcce
Confidence 58999999999999999999998 9999999999988864
No 215
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=97.58 E-value=6.2e-05 Score=75.52 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ 56 (483)
.++|+||||||+|+++|..|++.| ++ |+|||+.+.+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~~~ 40 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEI 40 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCCCc
Confidence 479999999999999999999999 99 9999998764
No 216
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=97.57 E-value=0.00048 Score=71.34 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++|+|||+|+.|+.+|..|.+.+ .+|+++++... .+.+ ..++...+.+.+++.|++++.+..+
T Consensus 207 ~~~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~---------l~~~--d~~~~~~~~~~l~~~GV~v~~~~~v 273 (519)
T 3qfa_A 207 PYCPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSIL---------LRGF--DQDMANKIGEHMEEHGIKFIRQFVP 273 (519)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCS---------STTS--CHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred hhcCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecccc---------cccC--CHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 344678999999999999999999999 99999997421 1221 2456677777888889999988543
Q ss_pred ce------------EEEe--cce----eeccCEEEEccCC
Q 011535 96 GS------------SVSL--SEL----RQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~------------~~~~--~~~----~~~yd~vvlAtG~ 117 (483)
.. .+.. .++ ...+|.|++|+|.
T Consensus 274 ~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~ 313 (519)
T 3qfa_A 274 IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR 313 (519)
T ss_dssp EEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE
T ss_pred EEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC
Confidence 21 1111 122 2358999999997
No 217
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.57 E-value=0.00043 Score=70.96 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++++|||+|+.|+.+|..|.+.+ .+|+++++... .+.. ..++...+.+.+++.|++++.++.+
T Consensus 184 ~~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~---------l~~~--d~~~~~~l~~~l~~~Gv~i~~~~~v 250 (483)
T 3dgh_A 184 DREPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMVRSIV---------LRGF--DQQMAELVAASMEERGIPFLRKTVP 250 (483)
T ss_dssp SSCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCS---------STTS--CHHHHHHHHHHHHHTTCCEEETEEE
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCC---------Cccc--CHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 345689999999999999999999999 99999987431 1221 3456677778888889999998765
Q ss_pred ce---------EEEecce------eeccCEEEEccCC
Q 011535 96 GS---------SVSLSEL------RQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~---------~~~~~~~------~~~yd~vvlAtG~ 117 (483)
.. .+.+.+. ...+|.||+|+|.
T Consensus 251 ~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~ 287 (483)
T 3dgh_A 251 LSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR 287 (483)
T ss_dssp EEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred EEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence 21 1333222 2469999999997
No 218
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=97.56 E-value=0.00043 Score=67.04 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. .+....+.+.++..+++++.+..+..
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~v~~~~~~~--------~~----~~~~~~l~~~l~~~gv~v~~~~~v~~ 216 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTA--RRITLIHRRPQFR--------AH----EASVKELMKAHEEGRLEVLTPYELRR 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCC--------SC----HHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEcCCccC--------cc----HHHHHHHHhccccCCeEEecCCccee
Confidence 4689999999999999999999998 9999999886531 11 23455667777778999999866521
Q ss_pred --------EEEec---ce---eeccCEEEEccCCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~~ 118 (483)
.+.+. ++ ...+|.||+|+|..
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2zbw_A 217 VEGDERVRWAVVFHNQTQEELALEVDAVLILAGYI 251 (335)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred EccCCCeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence 23443 33 34699999999973
No 219
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=97.56 E-value=0.00035 Score=71.45 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=67.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++++|||+|+.|+.+|..|.+. + .+|+++++.+.+. |.. ...++...+.+.+++.|++++.++.+.
T Consensus 158 ~~~~vvViGgG~~g~e~A~~l~~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~ 226 (472)
T 3iwa_A 158 EVSKAVIVGGGFIGLEMAVSLADMWG--IDTTVVELADQIM--------PGF-TSKSLSQMLRHDLEKNDVVVHTGEKVV 226 (472)
T ss_dssp SCSEEEEECCSHHHHHHHHHHHHHHC--CEEEEECSSSSSS--------TTT-SCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--CcEEEEEccCccc--------ccc-cCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 368999999999999999999999 8 9999999887532 211 124566777788888899999986552
Q ss_pred e--------EEEecce-eeccCEEEEccCC
Q 011535 97 S--------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+.++ ...+|.||+|+|.
T Consensus 227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 227 RLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp EEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred EEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 2 1333333 3469999999998
No 220
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=97.54 E-value=0.00036 Score=73.01 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 150 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 217 (565)
T 3ntd_A 150 NVEHATVVGGGFIGLEMMESLHHLG--IKTTLLELADQVM--------TP--VDREMAGFAHQAIRDQGVDLRLGTALSE 217 (565)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEETCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCCccc--------hh--cCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 4579999999999999999999999 9999999987532 31 2245666777778888999998865522
Q ss_pred ---------------------------EEEecce-eeccCEEEEccCC
Q 011535 98 ---------------------------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------------------------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.+.++ ...+|.||+|+|.
T Consensus 218 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV 265 (565)
T ss_dssp EEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred EeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence 1222222 2469999999997
No 221
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=97.54 E-value=0.00032 Score=68.92 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC-eEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~-v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+... ...++..........+.+.+++.+ ++++.+..+.
T Consensus 165 ~~~~vvVvG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~~~~---~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~ 239 (369)
T 3d1c_A 165 NKGQYVVIGGNESGFDAAYQLAKNG--SDIALYTSTTGLNDP---DADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK 239 (369)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTT--CEEEEECC-------------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhcC--CeEEEEecCCCCCCC---CCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence 3579999999999999999999998 999999988654210 011222233455566777777786 9999876542
Q ss_pred e--------EEEecceee--ccCEEEEccCCC
Q 011535 97 S--------SVSLSELRQ--LYHVVVLAYGAE 118 (483)
Q Consensus 97 ~--------~~~~~~~~~--~yd~vvlAtG~~ 118 (483)
. .+.+.++.. .+|.||+|||..
T Consensus 240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~ 271 (369)
T 3d1c_A 240 DIDFNNGQYHISFDSGQSVHTPHEPILATGFD 271 (369)
T ss_dssp EEEEETTEEEEEESSSCCEEESSCCEECCCBC
T ss_pred EEEecCCceEEEecCCeEeccCCceEEeeccC
Confidence 1 233444432 369999999983
No 222
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.54 E-value=0.00052 Score=70.50 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.. +.+ ..++...+.+.++..|++++.++.+
T Consensus 182 ~~~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~l---------~~~--d~~~~~~l~~~l~~~gv~~~~~~~v 248 (488)
T 3dgz_A 182 KESPGKTLVVGASYVALECAGFLTGIG--LDTTVMMRSIPL---------RGF--DQQMSSLVTEHMESHGTQFLKGCVP 248 (488)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCSS---------TTS--CHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEcCccc---------ccC--CHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 345678999999999999999999999 999999985311 221 2456677778888889999988654
Q ss_pred ce---------EEEecc---ee---eccCEEEEccCC
Q 011535 96 GS---------SVSLSE---LR---QLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~---------~~~~~~---~~---~~yd~vvlAtG~ 117 (483)
.. .+.+.+ +. ..+|.||+|+|.
T Consensus 249 ~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~ 285 (488)
T 3dgz_A 249 SHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR 285 (488)
T ss_dssp EEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence 21 122222 22 358999999997
No 223
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.50 E-value=8.5e-05 Score=76.31 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=38.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
..++|+|||||++||++|..|++.+ ..+|+|+|+.+.+||.+..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 4689999999999999999999986 2599999999999887654
No 224
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.50 E-value=0.00052 Score=70.60 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.++|+|||||+.|+.+|..|.+.+ .+.+|+++++.+.+.+. + ...++...+.+.++..|++++.++.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~----~-----l~~~~~~~~~~~l~~~GV~v~~~~~V~ 250 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK----I-----LPEYLSNWTMEKVRREGVKVMPNAIVQ 250 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT----T-----SCHHHHHHHHHHHHTTTCEEECSCCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc----c-----CCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 689999999999999999998732 12899999887543110 1 123566677778888899999986542
Q ss_pred e--------EEEeccee-eccCEEEEccCCC
Q 011535 97 S--------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~--------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
. .+.+.++. ..+|.||+|+|..
T Consensus 251 ~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~ 281 (493)
T 1m6i_A 251 SVGVSSGKLLIKLKDGRKVETDHIVAAVGLE 281 (493)
T ss_dssp EEEEETTEEEEEETTSCEEEESEEEECCCEE
T ss_pred EEEecCCeEEEEECCCCEEECCEEEECCCCC
Confidence 1 13344443 4699999999983
No 225
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.47 E-value=0.00051 Score=66.37 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ...+ ...+.+..|++++.++.+..
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g--~~v~~v~~~~~~~--------~----~~~~---~~~l~~~~gv~i~~~~~v~~ 234 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYG--SKVFMLVRKDHLR--------A----STIM---QKRAEKNEKIEILYNTVALE 234 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccC--------C----CHHH---HHHHHhcCCeEEeecceeEE
Confidence 4689999999999999999999998 9999999887542 1 1112 22233445899998876632
Q ss_pred ---------EEEecc------eeeccCEEEEccCC
Q 011535 98 ---------SVSLSE------LRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~------~~~~yd~vvlAtG~ 117 (483)
.+.+.+ ....+|.||+|+|.
T Consensus 235 i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 269 (338)
T 3itj_A 235 AKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH 269 (338)
T ss_dssp EEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred EEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence 133333 22469999999997
No 226
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=97.47 E-value=9.5e-05 Score=73.31 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||++|+++|+.|++++ .+|+|||+.+..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 469999999999999999999999 9999999987654
No 227
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=97.46 E-value=0.00014 Score=71.59 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||||++|+++|+.|++++ .+|+|||+....
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~~~ 41 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLPE 41 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccCCC
Confidence 4579999999999999999999998 999999997643
No 228
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.46 E-value=6.7e-05 Score=73.50 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~ 55 (483)
++|+|||||++|+++|+.|++++ |+.+|+|+|+.+.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 58999999999999999999997 6689999999864
No 229
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=97.46 E-value=0.00011 Score=73.34 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=33.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
.+|+|||||++|+++|+.|+++| .+|+|+|+.+.++
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~~ 40 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERG--HRVLVLERHTFFN 40 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTTC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCC
Confidence 69999999999999999999999 9999999987654
No 230
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.43 E-value=0.00012 Score=78.09 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...++|+|||||++|+++|..|.+.| ++|+|+|+.+.+||.+
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~ 146 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 146 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcc
Confidence 35689999999999999999999999 9999999999998864
No 231
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.41 E-value=0.00014 Score=79.36 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...++|+|||||++||+||..|.+.| ++|+|||+.+.+||.+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 317 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCce
Confidence 35689999999999999999999999 9999999999998864
No 232
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=97.41 E-value=0.00011 Score=75.88 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||||+|||++|..|++.| .+|+|+|+.+.++|
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~GG 78 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGWGG 78 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 468999999999999999999999 99999999987654
No 233
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.41 E-value=0.00016 Score=75.35 Aligned_cols=37 Identities=24% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||++|+++|..|++ .| ++|+|||+.+.+
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~~ 43 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAAIP 43 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCCCC
Confidence 35799999999999999999999 77 999999997543
No 234
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=97.38 E-value=0.00018 Score=75.21 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~ 55 (483)
..++|+|||||+||+++|..|++ .+ ++|+|||+.+.
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~ 62 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGT--ADITLLQAPDI 62 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTS--SEEEEEECCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCC--CcEEEEeCCCC
Confidence 46799999999999999999999 76 99999999754
No 235
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.37 E-value=0.00016 Score=73.17 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=38.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||+|++|+++|..|++.| .+|+++|+++.+||...
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~ 46 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGESS 46 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTSC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCcccccc
Confidence 3579999999999999999999999 99999999999988643
No 236
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=97.37 E-value=0.00011 Score=76.64 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+||||||+|+++|..|++.| ++|+|||+.+.++
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G--~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQ--VGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 368999999999999999999999 9999999987653
No 237
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=97.36 E-value=0.0005 Score=68.15 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=77.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc------CCHHHHHHHhcCCC--
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA------CTAKELREILGIKN-- 232 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~------f~~~el~~~~~~~~-- 232 (483)
+|+|||+|.+|+-+|..|++ .|. +|+|+.++...... .+...++++.-.+.
T Consensus 6 dVvIvG~G~aGl~~A~~La~--------------------~G~-~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~ 64 (397)
T 3cgv_A 6 DVLVVGGGPGGSTAARYAAK--------------------YGL-KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRS 64 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTT
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChH
Confidence 69999999999999999986 454 69999988643221 11233444311111
Q ss_pred --------eeEEeccccc-cCCCCcH--HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCC
Q 011535 233 --------LYVHIREDDL-IKSPTDE--EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS 301 (483)
Q Consensus 233 --------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 301 (483)
+.+....... ...+... ......--+..+.+.|.+.+. +.|+++++++.+.++. . ++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---------~~gv~i~~~~~v~~i~--~-~~ 132 (397)
T 3cgv_A 65 FIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA---------KAGADVWVKSPALGVI--K-EN 132 (397)
T ss_dssp TEEEEESEEEEECTTCSSCEEEC-----CCCEEEECHHHHHHHHHHHHH---------HHTCEEESSCCEEEEE--E-ET
T ss_pred HhhhhcceEEEEcCCCCEEEEEeccccCCceeEEEeHHHHHHHHHHHHH---------hCCCEEEECCEEEEEE--E-eC
Confidence 1111101000 0000000 000000012234455555443 5689999999999987 4 36
Q ss_pred CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 302 GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 302 g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.+.+|++.. .+++.++.+|+||.|+|...
T Consensus 133 ~~v~gv~~~~---------------~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 133 GKVAGAKIRH---------------NNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp TEEEEEEEEE---------------TTEEEEEEEEEEEECCCTTC
T ss_pred CEEEEEEEEE---------------CCeEEEEEcCEEEECCCcch
Confidence 6666666543 34456899999999999764
No 238
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=97.36 E-value=0.00015 Score=75.31 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHh------------cCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK------------AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~------------~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||+||+.+|..|++ .+ ++|+|||+.+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G--~~V~liE~~~~~ 54 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK--LNITLIESPDVA 54 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS--CEEEEEECSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC--CeEEEEeCCCCC
Confidence 45799999999999999999999 77 999999987643
No 239
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=97.35 E-value=0.00026 Score=73.25 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEE
Q 011535 260 RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVL 339 (483)
Q Consensus 260 r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi 339 (483)
.+.+.|.+.+. +.|+++++++.+.++. . +++++.++.+.. .+|+..++.+|+||
T Consensus 112 ~l~~~L~~~a~---------~~Gv~i~~~~~V~~v~--~-~~~~v~gv~~~~--------------~dG~~~~i~ad~VI 165 (512)
T 3e1t_A 112 RFDDMLLRNSE---------RKGVDVRERHEVIDVL--F-EGERAVGVRYRN--------------TEGVELMAHARFIV 165 (512)
T ss_dssp HHHHHHHHHHH---------HTTCEEESSCEEEEEE--E-ETTEEEEEEEEC--------------SSSCEEEEEEEEEE
T ss_pred HHHHHHHHHHH---------hCCCEEEcCCEEEEEE--E-ECCEEEEEEEEe--------------CCCCEEEEEcCEEE
Confidence 44455555543 5689999999999997 3 466666665543 13444589999999
Q ss_pred EeeecCC
Q 011535 340 KSIGYKS 346 (483)
Q Consensus 340 ~a~G~~~ 346 (483)
.|+|...
T Consensus 166 ~AdG~~S 172 (512)
T 3e1t_A 166 DASGNRT 172 (512)
T ss_dssp ECCCTTC
T ss_pred ECCCcch
Confidence 9999864
No 240
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.35 E-value=0.00018 Score=70.52 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=35.5
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
...+|+|++|++ +|-.|.. .|..+|..++.|++..+.+.+.
T Consensus 326 k~~~~Lf~AGqi-~G~~Gy~-eAaa~Gl~AG~naa~~~~g~~p 366 (443)
T 3g5s_A 326 REAEGLYAAGVL-AGVEGYL-ESAATGFLAGLNAARKALGLPP 366 (443)
T ss_dssp TTEEEEEECGGG-GTBCSHH-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCCEEECccc-cccHHHH-HHHHhHHHHHHHHHHHhcCCCC
Confidence 468999999998 5678887 7999999999999999988643
No 241
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=97.34 E-value=0.00079 Score=69.26 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc----ccCCHHHHHHHhcCCCe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ----AACTAKELREILGIKNL 233 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~----~~f~~~el~~~~~~~~~ 233 (483)
...+|+|||+|++|+.+|..|++ .| .+|+|+.+++... ..+....++.+..+.-.
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~--------------------~G-~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~ 149 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELAL--------------------LG-ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAK 149 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHH
T ss_pred CCCCEEEECccHHHHHHHHHHHH--------------------CC-CeEEEEEeccccCCCCcccCChhHHHHHHHcCCc
Confidence 45789999999999999999986 45 4799999885432 11222222222211100
Q ss_pred eEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeee
Q 011535 234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (483)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~ 313 (483)
.. ...+...+. ... ....+.+.|.+.+. +.|+++++++.+.++.... +++....+++...
T Consensus 150 ~~---~~~~~~~~~--~~~----~~~~l~~~L~~~~~---------~~gv~v~~~~~v~~i~~~~-~~~~~~~v~~~~~- 209 (497)
T 2bry_A 150 KF---YGRFCTGTL--DHI----SIRQLQLLLLKVAL---------LLGVEIHWGVKFTGLQPPP-RKGSGWRAQLQPN- 209 (497)
T ss_dssp HH---CTTTTCTTC--CEE----EHHHHHHHHHHHHH---------HTTCEEEESCEEEEEECCC-STTCCBEEEEESC-
T ss_pred cc---ccccccccc--ccC----CHHHHHHHHHHHHH---------hCCCEEEeCCEEEEEEEec-CCCCEEEEEEEEC-
Confidence 00 000000000 000 01233444544443 4689999999999987210 1233333433210
Q ss_pred eeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 314 l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
.+|+..++.+|.||.|+|..+..
T Consensus 210 ------------~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 210 ------------PPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp ------------CCHHHHTCCBSEEEECCCTTCCC
T ss_pred ------------CCCCEEEEEcCEEEECCCCCccc
Confidence 01222468999999999988743
No 242
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=97.32 E-value=0.0004 Score=72.07 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=35.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSV 347 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~ 347 (483)
+.|+++++++.+.++. . +++++..|++.+ | +++.||.||+|+|..+.
T Consensus 232 ~~Gv~I~~~t~V~~I~--~-~~~~v~gV~l~~----------------G--~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 232 ELGGEIRFSTRVDDLH--M-EDGQITGVTLSN----------------G--EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HTTCEEESSCCEEEEE--E-SSSBEEEEEETT----------------S--CEEECSCEEECCCTTCH
T ss_pred hcCCEEEeCCEEEEEE--E-eCCEEEEEEECC----------------C--CEEECCEEEECCCCChh
Confidence 5689999999999997 4 355565554421 2 37999999999999874
No 243
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=97.31 E-value=0.00017 Score=75.51 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
.....+|+|||||++|+.+|..|+++| .+|+|+|+.+..+|.
T Consensus 15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G--~~V~LlEk~d~~~Gt 56 (561)
T 3da1_A 15 SEKQLDLLVIGGGITGAGIALDAQVRG--IQTGLVEMNDFASGT 56 (561)
T ss_dssp TTSCEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSTTCSG
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCCc
Confidence 345689999999999999999999999 999999999765543
No 244
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=97.30 E-value=0.0016 Score=62.64 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ..+ ..++.+..+++++.++.+..
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~~~---~~~l~~~~gv~i~~~~~v~~ 213 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTKFA--DEVTVIHRRDTLR--------AN----KVA---QARAFANPKMKFIWDTAVEE 213 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeCCCcCC--------cc----hHH---HHHHHhcCCceEecCCceEE
Confidence 4589999999999999999999998 9999999876531 11 122 22334456899998876522
Q ss_pred --------EEEec---ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 214 i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 247 (325)
T 2q7v_A 214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGH 247 (325)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EccCCcEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence 23332 23 2469999999997
No 245
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=97.29 E-value=0.001 Score=66.75 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+.+|..|++ .+. +|+|+.+...
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~--------------------~G~-~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGK--------------------RGR-RVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 3579999999999999999986 443 6888887754
No 246
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=97.29 E-value=0.00084 Score=65.77 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ......+.+..++.+++++.++.+..
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~~~~l~~~~~~~gv~i~~~~~v~~ 227 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNA--ASVTLVHRGHEFQ--------GH----GKTAHEVERARANGTIDVYLETEVAS 227 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCS--------SC----SHHHHSSHHHHHHTSEEEESSEEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCCCC--------CC----HHHHHHHHHHhhcCceEEEcCcCHHH
Confidence 3579999999999999999999998 9999999876532 11 12334455556667899999866521
Q ss_pred ---------EEEec--ce---eeccCEEEEccCCC
Q 011535 98 ---------SVSLS--EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ---------~~~~~--~~---~~~yd~vvlAtG~~ 118 (483)
.+.+. ++ ...+|.||+|+|..
T Consensus 228 i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~ 262 (360)
T 3ab1_A 228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262 (360)
T ss_dssp EEEETTEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred hccCCCceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence 23332 33 34699999999973
No 247
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=97.27 E-value=0.0017 Score=61.87 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhc-CCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. .+ . .+.+.+.. .+++++.++.+.
T Consensus 143 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~----~~~~~l~~~~gv~v~~~~~v~ 204 (310)
T 1fl2_A 143 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD----Q----VLQDKLRSLKNVDIILNAQTT 204 (310)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC--------SC----H----HHHHHHHTCTTEEEESSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CEEEEEEeCcccC--------cc----H----HHHHHHhhCCCeEEecCCceE
Confidence 4689999999999999999999998 9999999887541 11 1 22333444 689999887652
Q ss_pred e---------EEEecc---e---eeccCEEEEccCC
Q 011535 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.||+|+|.
T Consensus 205 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 205 EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp EEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 1 133322 2 2469999999997
No 248
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.26 E-value=0.0002 Score=73.23 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|+++|..|.+.+ . +|+|+|+.+.+||.+.
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~ 45 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH 45 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCcee
Confidence 3579999999999999999999998 8 8999999999888654
No 249
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=97.26 E-value=0.0018 Score=62.43 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ..+ ..+.++..+++++.++.+..
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~---~~~~~~~~gv~i~~~~~v~~ 220 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFR--------AS----KIM---QQRALSNPKIDVIWNSSVVE 220 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred CCCeEEEECCChHHHHHHHHHHhcC--CeEEEEecCCcCC--------cc----HHH---HHHHHhCCCeeEecCCceEE
Confidence 4689999999999999999999998 9999999887531 11 111 22445667999998876521
Q ss_pred -----------EEEec---ce---eeccCEEEEccCC
Q 011535 98 -----------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 -----------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 257 (333)
T 1vdc_A 221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH 257 (333)
T ss_dssp EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence 13332 12 2469999999997
No 250
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=97.26 E-value=0.002 Score=61.50 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. . ...+ ...+.+..+++++.+..+..
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~---~~~l~~~~gv~v~~~~~v~~ 204 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANIC--KKVYLIHRRDGFR--------C----APIT---LEHAKNNDKIEFLTPYVVEE 204 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHTCTTEEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeeCCccC--------C----CHHH---HHHHhhCCCeEEEeCCEEEE
Confidence 4589999999999999999999998 9999999876541 1 1122 22233456899998866521
Q ss_pred ---------EEEec---ce---eeccCEEEEccCC
Q 011535 98 ---------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 205 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 239 (311)
T 2q0l_A 205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY 239 (311)
T ss_dssp EEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EECCCCcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence 13333 23 2469999999997
No 251
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=97.25 E-value=0.00072 Score=68.76 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||..|+.+|..|.+..+..+|+++++.+.+
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~ 264 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 468999999999999999999999444999999998753
No 252
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.25 E-value=0.0011 Score=68.11 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=64.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.+++||||||.|+.+|..|++.. .+.+|+|+|..+.+. |.+ .+++.....+.+++.||
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il--------~~~--~~~~~~~~~~~L~~~GV 287 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL--------NMF--EKKLSSYAQSHLENTSI 287 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHTTC
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc--------cCC--CHHHHHHHHHHHHhcce
Confidence 57999999999999999887532 137899999987642 332 34677778888888999
Q ss_pred EEEeCeEEce----EE----Eecce-----eeccCEEEEccCC
Q 011535 88 SFFGNVTLGS----SV----SLSEL-----RQLYHVVVLAYGA 117 (483)
Q Consensus 88 ~~~~~~~v~~----~~----~~~~~-----~~~yd~vvlAtG~ 117 (483)
+++.++.+.. .+ ...++ ...+|.||.|+|.
T Consensus 288 ~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 9999987632 11 12222 2469999999997
No 253
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=97.25 E-value=0.00018 Score=74.88 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
...+|+|||||+||+++|..|++ + .+|+|+|+.+..+
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~ 43 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTE 43 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC
T ss_pred CCCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCC
Confidence 35799999999999999999999 8 9999999997654
No 254
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=97.20 E-value=0.0021 Score=61.25 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ..+. +.+.++..|++++.++.+..
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~----~~~~---~~~~~~~~gv~~~~~~~v~~ 208 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLANIC--SKIYLIHRRDEFR--------A----APST---VEKVKKNEKIELITSASVDE 208 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHHTTS--SEEEEECSSSSCB--------S----CHHH---HHHHHHCTTEEEECSCEEEE
T ss_pred CcCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCCCCC--------C----CHHH---HHHHHhcCCeEEEeCcEEEE
Confidence 4689999999999999999999998 9999999886531 1 1122 33445677999998876532
Q ss_pred ---------EEEec--ce---eeccCEEEEccCC
Q 011535 98 ---------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 209 i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~ 242 (315)
T 3r9u_A 209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL 242 (315)
T ss_dssp EEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred EEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence 13332 33 3469999999997
No 255
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=97.19 E-value=0.00025 Score=73.31 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~ 55 (483)
.++|+|||||++|+++|..|++ .+ ++|+|||+.+.
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G--~~V~lvE~~~~ 39 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDR--IDVTLVESGNV 39 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGG--SEEEEEEC---
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCC--CEEEEEecCCC
Confidence 3699999999999999999999 88 99999999764
No 256
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=97.19 E-value=0.00015 Score=77.54 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHh-----cCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-----~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+||++|..|++ .| ++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCC
Confidence 4689999999999999999999 88 99999998754
No 257
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=97.18 E-value=0.00029 Score=76.22 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
..++|+|||||++|+++|..|++.| .+|+|+|+.+.+||-
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGGR 374 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceece
Confidence 4579999999999999999999999 999999999888873
No 258
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=97.17 E-value=0.0003 Score=72.57 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||++|+++|..|+++| ++|+|+|+.+..+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G--~~V~llE~~~~~~ 39 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRG--LSVLMLEAQDLAC 39 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 469999999999999999999999 9999999986443
No 259
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=97.17 E-value=0.0011 Score=66.99 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=30.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
|+|||||+|..|+.+|..|.+ ...--+|+||.+++..
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~-------------------~~~~~~VtlI~~~~~~ 39 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRN-------------------LMPDLKITLISDRPYF 39 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-------------------HCTTCEEEEECSSSEE
T ss_pred CcEEEECCCHHHHHHHHHHhc-------------------cCcCCeEEEEcCCCCC
Confidence 689999999999999999975 1223589999988643
No 260
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=97.17 E-value=0.00021 Score=71.35 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+|+|+|||+|+.|+.+|..|.+ ....-+|+||.++...
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~-------------------~~~~~~Vtlie~~~~~ 39 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKL-------------------ADPSIEVTLIEPNETY 39 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-------------------HCTTSEEEEECSCSSE
T ss_pred cCEEEEECCcHHHHHHHHHHHh-------------------cCcCCeEEEEeCCCCC
Confidence 7899999999999999999875 1223489999987653
No 261
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=97.16 E-value=0.00025 Score=75.37 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ 56 (483)
..+|+||||||+||++|..|++ .| ++|+|||+.+.+
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~ 68 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGP 68 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence 4689999999999999999999 88 999999998654
No 262
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=97.16 E-value=0.0025 Score=60.97 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. .. .+.++.+..|++++.+..+..
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~~----~~---~~~~~~~~~gv~~~~~~~v~~ 215 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYS--TKVYLIHRRDTFK--------AQ----PI---YVETVKKKPNVEFVLNSVVKE 215 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHS--SEEEEECSSSSCC--------SC----HH---HHHHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEeCCCCC--------cC----HH---HHHHHHhCCCcEEEeCCEEEE
Confidence 4689999999999999999999998 9999999886542 11 11 234445556999999876532
Q ss_pred --------EEEecc---e---eeccCEEEEccCC
Q 011535 98 --------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 216 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 249 (323)
T 3f8d_A 216 IKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF 249 (323)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EeccCceeEEEEEECCCCceEEEEcCEEEEEECC
Confidence 133332 3 2469999999997
No 263
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=97.15 E-value=0.00094 Score=64.33 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=66.9
Q ss_pred ceEEEeecCCcceeecccCC--C-C--ceEEEEEeeeeeeCCCCCceeeccCCceEEEec---------------CeEEE
Q 011535 281 RELHFVFFRKPDSFLESNER--S-G--HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC---------------GMVLK 340 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~--~-g--~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~---------------D~vi~ 340 (483)
.+++++....+.++. .+. + + +|.++.........+ |.. ....+..++.| +.||.
T Consensus 160 ~GV~i~~~~~V~~Ll--~~~~~~~g~~rV~GVvv~~~~v~~~--g~~--~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ 233 (326)
T 2gjc_A 160 PNVKLFNATCVEDLV--TRPPTEKGEVTVAGVVTNWTLVTQA--HGT--QCCMDPNVIELAGYKNDGTRDLSQKHGVILS 233 (326)
T ss_dssp TTEEEETTEEEEEEE--ECCCC-----CEEEEEEEEHHHHTC-------CCCCCCEEEEESCCCSSSCCCSSTTCCEEEE
T ss_pred cCcEEEecceeeeee--ecccccCCCcEEEEEEecceeeccc--ccc--eeccCceEEEEeeccccccccccccCCEEEE
Confidence 589999999999887 311 3 4 888887653211111 100 00123357889 99999
Q ss_pred eeecCCCCCCCCCccCCCCcccCCCCe--------------eeecCCCCCCc--ccCceeeeccCC----CCCc-c-hhH
Q 011535 341 SIGYKSVPVNGLPFDNHKGIVPNIRGR--------------VLKNISGDSSQ--VENGLYVCGWLK----RGPT-G-IIA 398 (483)
Q Consensus 341 a~G~~~~~~~~l~~~~~~g~~~~~~G~--------------v~v~~~~~~~t--~~p~vya~Gd~~----~g~~-~-~~~ 398 (483)
|||..+.- .. |....-..++..+. .+++. ... .+|++|++|... ..+. | +++
T Consensus 234 ATG~~~~~-~~--~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~r~g~~fg 307 (326)
T 2gjc_A 234 TTGHDGPF-GA--FCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIH---SGAYAGVDNMYFAGMEVAELDGLNRMGPTFG 307 (326)
T ss_dssp CCCCC--C-CS--HHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHH---CEECTTSTTEEECTHHHHHHHTCCBCCSCCH
T ss_pred CcCCCchH-HH--HHHhhccccccccccCceeccccccchhheeec---CCCccccCCEEECChHHHHhcCCCCCChhhh
Confidence 99987532 11 11110000011111 11121 113 689999999765 1222 2 344
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 011535 399 TNLYCAEETVASISEDLE 416 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~ 416 (483)
.-+-.|+.+|+.|++.|.
T Consensus 308 ~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 308 AMALSGVHAAEQILKHFA 325 (326)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhh
Confidence 446789999999998875
No 264
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.15 E-value=0.0024 Score=67.25 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||+.|+.+|..|++.+ .+|+++++.. +.|.. ..++...+.+.+++.|++++.+..+..
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~---------~l~~~--d~~~~~~~~~~l~~~gv~i~~~~~v~~ 351 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASLG--GDVTVMVRSI---------LLRGF--DQQMAEKVGDYMENHGVKFAKLCVPDE 351 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC---------SSTTS--CHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEECCc---------CcCcC--CHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4578999999999999999999999 9999999862 11321 234556667777778999998853311
Q ss_pred ---------------E--EE--eccee-e--ccCEEEEccCC
Q 011535 98 ---------------S--VS--LSELR-Q--LYHVVVLAYGA 117 (483)
Q Consensus 98 ---------------~--~~--~~~~~-~--~yd~vvlAtG~ 117 (483)
. +. ..++. . .+|.||+|+|.
T Consensus 352 v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~ 393 (598)
T 2x8g_A 352 IKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393 (598)
T ss_dssp EEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCE
T ss_pred EEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCC
Confidence 1 11 12222 2 39999999997
No 265
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=97.13 E-value=0.0019 Score=62.45 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=59.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. +.+ ..++++..+++++.+..+..
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~V~l~~~~~~~~--------~~----~~~---~~~~~~~~gV~v~~~~~v~~ 216 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFA--RSVTLVHRRDEFR--------AS----KIM---LDRARNNDKIRFLTNHTVVA 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTC--SEEEEECSSSSCS--------SC----TTH---HHHHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEcCCcCC--------cc----HHH---HHHHhccCCcEEEeCceeEE
Confidence 4689999999999999999999998 9999999886531 11 111 12334567999998876532
Q ss_pred --------EEEec---ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2a87_A 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGH 250 (335)
T ss_dssp EECSSSCCEEEEEEETTSCCEEECCSCEEECSCE
T ss_pred EecCCcEeEEEEEEcCCCceEEeecCEEEEccCC
Confidence 13332 12 3469999999997
No 266
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=97.11 E-value=0.00037 Score=73.71 Aligned_cols=39 Identities=33% Similarity=0.406 Sum_probs=36.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+.+..+|.
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G--~~V~liE~~~~~gg~ 84 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDSGL 84 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--CcEEEEeccCCCCCc
Confidence 468999999999999999999999 999999999887763
No 267
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.11 E-value=0.0019 Score=65.84 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=60.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |.. ...++...+.+.++ ++++.++.+.
T Consensus 170 ~~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~---v~i~~~~~v~ 235 (466)
T 3l8k_A 170 KLPQDMVIIGAGYIGLEIASIFRLMG--VQTHIIEMLDRAL--------ITL-EDQDIVNTLLSILK---LNIKFNSPVT 235 (466)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TTS-CCHHHHHHHHHHHC---CCEECSCCEE
T ss_pred hCCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCcCC--------CCC-CCHHHHHHHHhcCE---EEEEECCEEE
Confidence 34689999999999999999999999 9999999987542 221 02345555555544 7777665431
Q ss_pred e---------EEEec--ce---eeccCEEEEccCC
Q 011535 97 S---------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
. .+.+. ++ ...+|.||+|+|.
T Consensus 236 ~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~ 270 (466)
T 3l8k_A 236 EVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR 270 (466)
T ss_dssp EEEEEETTEEEEEECCTTSCCEEEEESCEEECCCE
T ss_pred EEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCC
Confidence 1 13333 22 3468999999997
No 268
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=97.10 E-value=0.0026 Score=66.03 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|..|+.+|..|++.+ .+|++|++.+.
T Consensus 176 ~~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~ 212 (540)
T 3gwf_A 176 LAGRRVGVIGTGSTGQQVITSLAPEV--EHLTVFVRTPQ 212 (540)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHTTTC--SEEEEEESSCC
T ss_pred cccceEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence 45789999999999999999999998 99999999876
No 269
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=97.10 E-value=0.0021 Score=61.69 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. +. +.+.+...|++++.++.+..
T Consensus 154 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~i~~~~~~~--------~~----~~----l~~~l~~~gv~i~~~~~v~~ 215 (319)
T 3cty_A 154 KGKRVVTIGGGNSGAIAAISMSEYV--KNVTIIEYMPKYM--------CE----NA----YVQEIKKRNIPYIMNAQVTE 215 (319)
T ss_dssp BTSEEEEECCSHHHHHHHHHHTTTB--SEEEEECSSSSCC--------SC----HH----HHHHHHHTTCCEECSEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhC--CcEEEEEcCCccC--------CC----HH----HHHHHhcCCcEEEcCCeEEE
Confidence 3589999999999999999999998 9999999876531 11 12 22333456899988866521
Q ss_pred ---------EEEec---ce---eeccCEEEEccCC
Q 011535 98 ---------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 216 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (319)
T 3cty_A 216 IVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL 250 (319)
T ss_dssp EEESSSSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred EecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence 13332 23 2469999999997
No 270
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=97.10 E-value=0.00027 Score=74.10 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||||.+|+++|+.|+++| .+|+|||+.+..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG--~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASG--IKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 4579999999999999999999999 99999999865443
No 271
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.10 E-value=0.00035 Score=71.03 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||+|.+|+.+|..|++.| .+|+++|+++.+||..
T Consensus 19 ~~~dv~iiG~G~~g~~~a~~l~~~g--~~v~~~e~~~~~Gg~~ 59 (475)
T 3p1w_A 19 EHYDVIILGTGLKECILSGLLSHYG--KKILVLDRNPYYGGET 59 (475)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeccCCCCCCc
Confidence 3579999999999999999999999 9999999999988864
No 272
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=97.09 E-value=0.0014 Score=63.55 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=67.9
Q ss_pred ceEEEeecCCcceeecccCCC----------------C--ceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEee
Q 011535 281 RELHFVFFRKPDSFLESNERS----------------G--HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~~----------------g--~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~ 342 (483)
.++++++++.+.++. .+++ + ++.++.......... +.. ....+..+|.++.||.||
T Consensus 174 ~gV~i~~~~~V~dLi--~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~--g~~--~~~~d~~~i~Ak~VV~AT 247 (344)
T 3jsk_A 174 PNVKLFNATTVEDLI--TRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMH--HDD--QSAMDPNTINAPVIISTT 247 (344)
T ss_dssp TTEEEEETEEEEEEE--EEEC----------------CCEEEEEEEEEEHHHHTT--SSS--SSCCBCEEEECSEEEECC
T ss_pred CCCEEEeCCEEEEEE--ecCCcccccccccccccccCCCceEeEEEeeeeeeecc--CCc--ccccCceEEEcCEEEECC
Confidence 589999999888886 3111 2 666665543211111 100 001234689999999999
Q ss_pred ecCCCCCCCC--CccCCCCcccCCCCe----------eeecCCCCCCcccCceeeeccCCC---C-C-cc-hhHhhHHHH
Q 011535 343 GYKSVPVNGL--PFDNHKGIVPNIRGR----------VLKNISGDSSQVENGLYVCGWLKR---G-P-TG-IIATNLYCA 404 (483)
Q Consensus 343 G~~~~~~~~l--~~~~~~g~~~~~~G~----------v~v~~~~~~~t~~p~vya~Gd~~~---g-~-~~-~~~~a~~~g 404 (483)
|....- -.+ ......++...-.|. .+++. .+.-+||+|++|-.++ | | .| +++.=+..|
T Consensus 248 G~~s~v-~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~---t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg 323 (344)
T 3jsk_A 248 GHDGPF-GAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNN---TREIVPGLIVGGMELSEIDGANRMGPTFGAMALSG 323 (344)
T ss_dssp CSSSSS-SCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHT---CEEEETTEEECGGGHHHHHTCEECCSCCHHHHHHH
T ss_pred CCCchh-hHHHHHHHhhcCcccccCCCcccccccchhhhccc---CceEcCCEEEechhhHhhcCCCCCCcccceeeecC
Confidence 977531 100 000111211000111 11121 2245799999997652 1 1 12 333346789
Q ss_pred HHHHHHHHHHHhc
Q 011535 405 EETVASISEDLEQ 417 (483)
Q Consensus 405 ~~~a~~I~~~l~~ 417 (483)
+.+|+.|++.|..
T Consensus 324 ~~~a~~~~~~~~~ 336 (344)
T 3jsk_A 324 VKAAHEAIRVFDL 336 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988864
No 273
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=97.06 E-value=0.00036 Score=73.37 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||+||++||..|++.+ .+|+|+|+.+..
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence 468999999999999999999999 999999998643
No 274
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=97.06 E-value=0.0014 Score=64.60 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=77.0
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc------CCHHHHHHHhcCC---
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA------CTAKELREILGIK--- 231 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~------f~~~el~~~~~~~--- 231 (483)
.|+|||+|++|+-+|..|++ .|. +|+|+.|++....+ ++..-++++.-..
T Consensus 6 DViIVGaGpaGl~~A~~La~--------------------~G~-~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~ 64 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAK--------------------YGL-KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRS 64 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTT
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhh
Confidence 59999999999999999987 554 69999987543221 2233344432111
Q ss_pred CeeEEecccccc----------CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCC
Q 011535 232 NLYVHIREDDLI----------KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS 301 (483)
Q Consensus 232 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 301 (483)
.+...+....+. ..+.........-.+..+.+.|.+.+. +.|+.+++++.+..+. . ++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~---------~~G~~~~~~~~v~~~~--~-~~ 132 (397)
T 3oz2_A 65 FIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA---------KAGADVWVKSPALGVI--K-EN 132 (397)
T ss_dssp TEEEEESEEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHH---------HHTCEEESSCCEEEEE--E-ET
T ss_pred hhhcccceEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHH---------hcCcEEeeeeeeeeee--e-cc
Confidence 111111100000 000000000000112334455555544 5689999999998887 3 46
Q ss_pred CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 302 GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 302 g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.+..+.... +++..++.+|+||-|.|...
T Consensus 133 ~~~~~v~~~~---------------~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 133 GKVAGAKIRH---------------NNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp TEEEEEEEEE---------------TTEEEEEEEEEEEECCCTTC
T ss_pred ceeeeeeecc---------------cccceEEEEeEEEeCCcccc
Confidence 6665554332 45556899999999999754
No 275
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=97.04 E-value=0.00039 Score=73.28 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||+||+++|..|++.+++.+|+|||+.+.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 3689999999999999999999887789999999854
No 276
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=97.02 E-value=0.002 Score=65.24 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=33.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . +++.+..|++. +| +++.+|.||+|+|..+
T Consensus 146 ~~GV~i~~~~~V~~i~--~-~~~~v~~V~~~----------------~G--~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 146 DLGVKIRTNTPVETIE--Y-ENGQTKAVILQ----------------TG--EVLETNHVVIAVGGKS 191 (447)
T ss_dssp HTTCEEECSCCEEEEE--E-ETTEEEEEEET----------------TC--CEEECSCEEECCCCSS
T ss_pred HCCCEEEeCcEEEEEE--e-cCCcEEEEEEC----------------CC--CEEECCEEEECCCCCc
Confidence 5689999999999987 3 35554444321 22 2699999999999876
No 277
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=97.00 E-value=0.00045 Score=72.92 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||+|||+||..|++.| .+|+|+|+.+.
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 469999999999999999999999 99999999854
No 278
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=96.99 E-value=0.0019 Score=65.54 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=77.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-------cCCHHHHHHHhcCCC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-------ACTAKELREILGIKN 232 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-------~f~~~el~~~~~~~~ 232 (483)
-+|+|||+|.+|+-+|..|++ .|. +|+|+.++..... .++...++++.....
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~--------------------~G~-~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~ 65 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSR--------------------RGL-KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYP 65 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSS--------------------SSC-CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCCCCCCcccccccccHHHHHHhcCCCC
Confidence 369999999999999999986 454 6999998764211 112344444321110
Q ss_pred ----eeEEeccccccCCCCcH-----HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCc
Q 011535 233 ----LYVHIREDDLIKSPTDE-----EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGH 303 (483)
Q Consensus 233 ----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~ 303 (483)
....+....+. .+... ......-.+..+.+.|.+.+. +.|+++++++.++++. . +++.
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~---------~~gv~i~~~~~v~~i~--~-~~~~ 132 (453)
T 3atr_A 66 KGEELENKINGIKLY-SPDMQTVWTVNGEGFELNAPLYNQRVLKEAQ---------DRGVEIWDLTTAMKPI--F-EDGY 132 (453)
T ss_dssp CGGGEEEEEEEEEEE-CTTSSCEEEEEEEEEEECHHHHHHHHHHHHH---------HTTCEEESSEEEEEEE--E-ETTE
T ss_pred chHHHHhhhcceEEE-CCCCceEEeECCCcEEEcHHHHHHHHHHHHH---------HcCCEEEeCcEEEEEE--E-ECCE
Confidence 11111000000 00000 000000112334455555543 4689999999999887 3 3566
Q ss_pred eEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 304 v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.+|++... .+|+..++.+|+||.|+|..+
T Consensus 133 v~gv~~~~~-------------~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 133 VKGAVLFNR-------------RTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp EEEEEEEET-------------TTTEEEEEECSEEEECCGGGC
T ss_pred EEEEEEEEc-------------CCCceEEEEcCEEEECcCCch
Confidence 655655420 023445799999999999765
No 279
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=96.98 E-value=0.0024 Score=64.65 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=52.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE-E
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT-L 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~-v 95 (483)
..++|+|||+|++|+.+|..|++.+ .+ |+++++.+.+ +...++.+..... +
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~--~~~V~l~~r~~~~-------------------------l~~~~i~~~~~v~~~ 263 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLGGGD-------------------------IQNESLQQVPEITKF 263 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTTCCS-------------------------CBCSSEEEECCEEEE
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHh--CCcEEEEeCCCCc-------------------------CCCCCeEEecCeEEE
Confidence 5689999999999999999999998 88 9999987654 1122343322111 1
Q ss_pred ---ceEEEecceee--ccCEEEEccCCC
Q 011535 96 ---GSSVSLSELRQ--LYHVVVLAYGAE 118 (483)
Q Consensus 96 ---~~~~~~~~~~~--~yd~vvlAtG~~ 118 (483)
+..+.+.++.. .+|.||+|||..
T Consensus 264 ~~~~~~v~~~dG~~~~~~D~vi~atG~~ 291 (447)
T 2gv8_A 264 DPTTREIYLKGGKVLSNIDRVIYCTGYL 291 (447)
T ss_dssp ETTTTEEEETTTEEECCCSEEEECCCBC
T ss_pred ecCCCEEEECCCCEeccCCEEEECCCCC
Confidence 12345555543 699999999973
No 280
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=96.97 E-value=0.0018 Score=64.78 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=29.0
Q ss_pred CceeeeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 381 NGLYVCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 381 p~vya~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
++++.+||++.. ..|+. .|+.+|..+|+.|.+.+.++
T Consensus 288 ~~v~lvGDAa~~~~P~~G~G~~-~A~~~a~~la~~l~~~~~~~ 329 (421)
T 3nix_A 288 DGFVLTGNATEFLDPIFSSGAT-FAMESGSKGGKLAVQFLKGE 329 (421)
T ss_dssp TTEEECGGGTCBCCSTTCCHHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEecccccccCCcccccHH-HHHHHHHHHHHHHHHHhcCC
Confidence 679999998752 24555 78999999999998887654
No 281
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=96.95 E-value=0.0017 Score=63.02 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+.+|..|++ .+. +|+++.+++.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~--------------------~g~-~v~vie~~~~ 37 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRR--------------------SGL-SYVILDAEAS 37 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------SSC-CEEEECCSSS
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 379999999999999999986 444 6999998864
No 282
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=96.95 E-value=0.0028 Score=67.95 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=63.9
Q ss_pred CCCeEEEEC--ccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG--~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+||| +|+.|+.+|..|.+.+ .+|+++++.+.+..... .......+.+.+++.|++++.++.+
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g--~~Vtlv~~~~~l~~~~~---------~~~~~~~l~~~l~~~GV~i~~~~~V 590 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKG--YEVSIVTPGAQVSSWTN---------NTFEVNRIQRRLIENGVARVTDHAV 590 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTT--CEEEEEESSSSTTGGGG---------GGTCHHHHHHHHHHTTCEEEESEEE
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCC--CeeEEEecccccccccc---------cchhHHHHHHHHHHCCCEEEcCcEE
Confidence 457899999 9999999999999999 99999998876432211 0112344566667789999999776
Q ss_pred ce----EEEec-----ce-eeccCEEEEccCC
Q 011535 96 GS----SVSLS-----EL-RQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~----~~~~~-----~~-~~~yd~vvlAtG~ 117 (483)
.. .+.+. +. ...+|.||+|+|.
T Consensus 591 ~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~ 622 (690)
T 3k30_A 591 VAVGAGGVTVRDTYASIERELECDAVVMVTAR 622 (690)
T ss_dssp EEEETTEEEEEETTTCCEEEEECSEEEEESCE
T ss_pred EEEECCeEEEEEccCCeEEEEECCEEEECCCC
Confidence 32 12211 22 2469999999997
No 283
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=96.93 E-value=0.0027 Score=64.70 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE-E-
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT-L- 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~-v- 95 (483)
..++|+|||+|++|+.+|..|++.+ .+|+++++.+.+.+.. . | .+++++.... +
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g--~~V~li~~~~~~~~~~---~-~------------------~~V~~~~~V~~i~ 251 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYG--AKKLISCYRTAPMGYK---W-P------------------ENWDERPNLVRVD 251 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTT--CSEEEEECSSCCCCCC---C-C------------------TTEEECSCEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhC--CeEEEEEECCCCCCCC---C-C------------------CceEEcCCeEEEe
Confidence 4689999999999999999999999 9999999887642210 0 1 2444432111 1
Q ss_pred ceEEEeccee-eccCEEEEccCCC
Q 011535 96 GSSVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 96 ~~~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
+..+.+.++. ..+|.||+|||..
T Consensus 252 ~~~V~~~dG~~i~~D~Vi~atG~~ 275 (464)
T 2xve_A 252 TENAYFADGSSEKVDAIILCTGYI 275 (464)
T ss_dssp SSEEEETTSCEEECSEEEECCCBC
T ss_pred CCEEEECCCCEEeCCEEEECCCCC
Confidence 2234455544 4699999999973
No 284
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=96.92 E-value=0.0006 Score=68.93 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-++|+|||+|..|+.+|..|.+ .+ ....+|+||.+++.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~----------------~~--~~g~~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKE----------------AL--GSGHEVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHH----------------HH--GGGSEEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhc----------------cC--CCcCEEEEEeCCCC
Confidence 3689999999999999999974 01 12347999998874
No 285
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=96.90 E-value=0.0067 Score=63.61 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEE
Q 011535 260 RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVL 339 (483)
Q Consensus 260 r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi 339 (483)
.+.+.|.+.+. +.|+.+++++.+.++. . +++.+..|++.. +|+..++.||+||
T Consensus 129 ~l~~~L~~~a~---------~~Gv~i~~g~~V~~v~--~-~~g~~~~V~~~~---------------~G~~~~i~AdlVV 181 (591)
T 3i3l_A 129 EFDKLLLDEAR---------SRGITVHEETPVTDVD--L-SDPDRVVLTVRR---------------GGESVTVESDFVI 181 (591)
T ss_dssp HHHHHHHHHHH---------HTTCEEETTCCEEEEE--C-CSTTCEEEEEEE---------------TTEEEEEEESEEE
T ss_pred HHHHHHHHHHH---------hCCCEEEeCCEEEEEE--E-cCCCEEEEEEec---------------CCceEEEEcCEEE
Confidence 34455555544 5689999999999987 3 245555665542 2444589999999
Q ss_pred EeeecCC
Q 011535 340 KSIGYKS 346 (483)
Q Consensus 340 ~a~G~~~ 346 (483)
.|+|...
T Consensus 182 ~AdG~~S 188 (591)
T 3i3l_A 182 DAGGSGG 188 (591)
T ss_dssp ECCGGGC
T ss_pred ECCCCcc
Confidence 9999875
No 286
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=96.90 E-value=0.00059 Score=69.13 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...+|+|||||++|+++|+.|+++++ .+|+|||+.
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~-~~V~vlE~~ 56 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSG-GSVLVVDAG 56 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEccC
Confidence 35799999999999999999999863 699999993
No 287
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=96.90 E-value=0.00055 Score=72.79 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||.||++||+.|++.| .+|+|+|+.+..
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 468999999999999999999999 999999998643
No 288
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=96.89 E-value=0.0069 Score=62.94 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|+.|+.+|..|++.+ .+|++|++.+.
T Consensus 183 ~~~krV~VIG~G~tgve~a~~la~~~--~~Vtv~~r~~~ 219 (545)
T 3uox_A 183 FTGKRVGVIGTGATGVQIIPIAAETA--KELYVFQRTPN 219 (545)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHTTTB--SEEEEEESSCC
T ss_pred cCCCeEEEECCCccHHHHHHHHHhhC--CEEEEEEcCCC
Confidence 35689999999999999999999998 99999999875
No 289
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=96.86 E-value=0.0033 Score=62.65 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.6
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+.+|..|++ .+. +|+|+.+...
T Consensus 6 dViIIGgG~aGl~aA~~la~--------------------~G~-~V~vlEk~~~ 38 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAK--------------------LGK-SVTVFDNGKK 38 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 69999999999999999986 444 6888887753
No 290
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=96.86 E-value=0.0036 Score=60.13 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ... .+.++..|++++.+..+..
T Consensus 153 ~~~~v~vvG~g~~~~e~a~~l~~~~--~~v~~~~~~~~~~--------~~----~~~----~~~l~~~gv~~~~~~~v~~ 214 (332)
T 3lzw_A 153 AGRRVAILGGGDSAVDWALMLEPIA--KEVSIIHRRDKFR--------AH----EHS----VENLHASKVNVLTPFVPAE 214 (332)
T ss_dssp BTCEEEEECSSHHHHHHHHHHTTTB--SEEEEECSSSSCS--------SC----HHH----HHHHHHSSCEEETTEEEEE
T ss_pred CCCEEEEECCCHhHHHHHHHHHhhC--CeEEEEEecCcCC--------cc----HHH----HHHHhcCCeEEEeCceeeE
Confidence 3689999999999999999999998 9999999876531 11 111 1224567899998876632
Q ss_pred --------EEEecc------eeeccCEEEEccCC
Q 011535 98 --------SVSLSE------LRQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~------~~~~yd~vvlAtG~ 117 (483)
.+.+.+ ....+|.||+|+|.
T Consensus 215 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 248 (332)
T 3lzw_A 215 LIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGF 248 (332)
T ss_dssp EECSSSCCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred EecCCceEEEEEEecCCCceEEEECCEEEEeecc
Confidence 133333 12469999999997
No 291
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=96.86 E-value=0.006 Score=63.47 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|+.|+.+|..|++.+ .+|++|++.+.
T Consensus 189 ~~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~ 225 (549)
T 4ap3_A 189 FTGKRVGVIGTGSSGIQSIPIIAEQA--EQLFVFQRSAN 225 (549)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSCC
T ss_pred cCCCEEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence 35789999999999999999999998 99999999875
No 292
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=96.80 E-value=0.0021 Score=64.16 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++|+|||+|.+|+.+|..|.+ .+ ....+|+|+.+++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~----------------~~--~~g~~V~vie~~~~ 38 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKR----------------LV--GSKADVKVINKSRF 38 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHH----------------HH--GGGSEEEEEESSSE
T ss_pred CeEEEECCCHHHHHHHHHHHh----------------hC--CCCCeEEEEeCCCC
Confidence 579999999999999999874 00 02358999998864
No 293
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.79 E-value=0.00097 Score=70.88 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=35.7
Q ss_pred CCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 376 SSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
++|++||+||+|||+. +..|....+..+|..++.+++.++...
T Consensus 448 ~~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~ 491 (662)
T 3gyx_A 448 RMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH 491 (662)
T ss_dssp TBCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence 6799999999999974 556655578889999999999998764
No 294
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=96.78 E-value=0.0069 Score=62.60 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhc-CCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. ++ ..+.+.+.. .|++++.+..+.
T Consensus 354 ~~k~V~ViGgG~~g~E~A~~L~~~g--~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gV~v~~~~~v~ 415 (521)
T 1hyu_A 354 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD--------QVLQDKVRSLKNVDIILNAQTT 415 (521)
T ss_dssp BTSEEEEECCSHHHHHHHHHHHHHB--SEEEEECSSSSCC--------SC--------HHHHHHHTTCTTEEEECSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCcccC--------cC--------HHHHHHHhcCCCcEEEeCCEEE
Confidence 4689999999999999999999998 9999999877532 11 123344444 589999887652
Q ss_pred e---------EEEecc---e---eeccCEEEEccCC
Q 011535 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.|++|+|.
T Consensus 416 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 451 (521)
T 1hyu_A 416 EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL 451 (521)
T ss_dssp EEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence 1 122221 2 2459999999997
No 295
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=96.75 E-value=0.00067 Score=72.21 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCC------CCeEEEEecCC-CC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ------EAQVDIIDRLP-TP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~------~~~v~lie~~~-~~ 56 (483)
..++|+|||||++||+||..|.+.+. .++|+|+|+.+ .+
T Consensus 55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 35789999999999999999998762 27999999998 77
No 296
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=96.74 E-value=0.0051 Score=61.06 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|++ .+. +|+|+.++..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~--------------------~G~-~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGR--------------------QGH-RVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEeCCCC
Confidence 479999999999999999986 454 6899988753
No 297
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=96.72 E-value=0.0012 Score=70.23 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCeEEEECccHHHHHHHHHHH---h-cCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTL---K-AHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~---~-~~~~~~v~lie~~~~ 55 (483)
..+|+|||||+|||+||..|+ + .+ .+|+|+|+.+.
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G--~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCC--CeEEEEeCcCC
Confidence 479999999999999999999 5 78 99999999864
No 298
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=96.70 E-value=0.0088 Score=56.95 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G--~~Vt~v~~~~~ 186 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYG--SKVIILHRRDA 186 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHhC--Ceeeeeccccc
Confidence 4689999999999999999999999 99999997653
No 299
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=96.68 E-value=0.014 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+
T Consensus 144 ~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 144 KNKRLFVIGGGDSAVEEGTFLTKFA--DKVTIVHRRDEL 180 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeccccc
Confidence 3579999999999999999999999 999999987653
No 300
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=96.68 E-value=0.0047 Score=62.15 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=29.8
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
++|+|||+|..|+.+|..|.+ .....+|+||.+++..
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~-------------------~~~g~~Vtlie~~~~~ 39 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRN-------------------LMPDLKITLISDRPYF 39 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-------------------HCTTCEEEEECSSSEE
T ss_pred CCEEEECccHHHHHHHHHHHc-------------------CCCCCeEEEECCCCCC
Confidence 589999999999999999985 1123589999998653
No 301
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=96.63 E-value=0.01 Score=61.98 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=37.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.++++. .+++++|.+|.+.. .+|+..++.+|.||+|+|...
T Consensus 267 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~--------------~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 267 KRNIDLRMNTRGIEVL--KDDKGTVKGILVKG--------------MYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HTTCEEESSEEEEEEE--ECTTSCEEEEEEEE--------------TTTEEEEEECSEEEECCCCCT
T ss_pred hcCCEEEeCCEeeEeE--EcCCCeEEEEEEEe--------------CCCcEEEEECCeEEEeCCCcc
Confidence 5689999999999997 41237887776653 134445799999999999754
No 302
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=96.61 E-value=0.0033 Score=59.29 Aligned_cols=79 Identities=8% Similarity=-0.019 Sum_probs=56.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc-
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~- 96 (483)
..++|+|||+|+.|+.+|..|.+.+ +|+++++.+.. + . ..+.+.++..|++++. ..+.
T Consensus 140 ~~~~v~vvG~G~~~~e~a~~l~~~g---~v~~v~~~~~~-------~------~----~~~~~~l~~~gv~i~~-~~v~~ 198 (297)
T 3fbs_A 140 DQGKIGVIAASPMAIHHALMLPDWG---ETTFFTNGIVE-------P------D----ADQHALLAARGVRVET-TRIRE 198 (297)
T ss_dssp TTCEEEEECCSTTHHHHHHHGGGTS---EEEEECTTTCC-------C------C----HHHHHHHHHTTCEEEC-SCEEE
T ss_pred cCCEEEEEecCccHHHHHHHhhhcC---cEEEEECCCCC-------C------C----HHHHHHHHHCCcEEEc-ceeee
Confidence 4689999999999999999999884 89999876540 0 1 1244556667899885 3331
Q ss_pred ---e-EEEeccee-eccCEEEEccCC
Q 011535 97 ---S-SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 97 ---~-~~~~~~~~-~~yd~vvlAtG~ 117 (483)
. .+.+.++. ..+|.||+|+|.
T Consensus 199 i~~~~~v~~~~g~~~~~D~vi~a~G~ 224 (297)
T 3fbs_A 199 IAGHADVVLADGRSIALAGLFTQPKL 224 (297)
T ss_dssp EETTEEEEETTSCEEEESEEEECCEE
T ss_pred eecCCeEEeCCCCEEEEEEEEEccCc
Confidence 1 34454443 469999999997
No 303
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=96.55 E-value=0.0044 Score=61.40 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=27.9
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+-+|..|++ .|. +|+|+.++..
T Consensus 4 dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 36 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQTP 36 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSCH
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 69999999999999999986 354 6889988763
No 304
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=96.49 E-value=0.011 Score=62.02 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=80.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC--CccEEEEEeecCcccc------cCCHHHHHHHhc--
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS--SIRKVYLVGRRGPVQA------ACTAKELREILG-- 229 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~--~~~~V~li~r~~~~~~------~f~~~el~~~~~-- 229 (483)
-+|+|||+|.+|+-+|..|++. .... + .+|.|+.+...... .+....+++++.
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~----------------~~~~~~G-~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~ 98 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQL----------------AAQHEKD-LRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDW 98 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH----------------HHHTTCC-CCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTH
T ss_pred CCEEEECcCHHHHHHHHHHHhc----------------ccccCCC-CcEEEEeCCCCCCCccccccccCHHHHHHHHHHH
Confidence 3699999999999999999860 0001 3 46999998754321 133344444421
Q ss_pred ----CCC------eeEEecccc----ccCCCC--cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 230 ----IKN------LYVHIREDD----LIKSPT--DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 230 ----~~~------~~~~~~~~~----~~~~~~--~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+- -.+.+.... +...+. ........-.+..+.+.|.+.+. +.|+++++++.+.+
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~---------~~Gv~i~~g~~v~~ 169 (584)
T 2gmh_A 99 KEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE---------ALGVEVYPGYAAAE 169 (584)
T ss_dssp HHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH---------HTTCEEETTCCEEE
T ss_pred HhcCCceeeeechhheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHH---------HcCCEEEcCCEEEE
Confidence 010 012111110 000011 00000000012344455555544 45899999999999
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+. .++++.+.+|.+.+..+.. +|+.... ...+.++.+|.||.|.|..+
T Consensus 170 l~--~~~~g~V~gV~~~~~g~~~--~G~~~~~-~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 170 IL--FHEDGSVKGIATNDVGIQK--DGAPKTT-FERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp EE--ECTTSSEEEEEECCEEECT--TSCEEEE-EECCCEEECSEEEECCCTTC
T ss_pred EE--EcCCCCEEEEEeCCccccC--CCCcccc-cCCceEEECCEEEEeeCCCc
Confidence 87 3235677777665321110 1110000 00124799999999999864
No 305
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=96.47 E-value=0.0066 Score=61.55 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ 56 (483)
...++|+|||||..|+.+|..+.+.+ . +|+++++.+..
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtiv~r~~~~ 300 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIRQG--ATSVKCLYRRDRK 300 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCST
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcC--CCEEEEEEeCCcc
Confidence 35689999999999999999999998 7 59999987653
No 306
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=96.43 E-value=0.012 Score=57.12 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . +++....|... +|+..++.||.||+|+|...
T Consensus 162 ~~Gv~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 162 SDGAQLVFHTPLIAGR--V-RPEGGFELDFG----------------GAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HTTCEEECSCCEEEEE--E-CTTSSEEEEEC----------------TTSCEEEEEEEEEECCGGGH
T ss_pred HCCCEEECCCEEEEEE--E-cCCceEEEEEC----------------CCceeEEEeCEEEECCCcch
Confidence 5689999999999987 3 23321223221 34445899999999999765
No 307
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=96.41 E-value=0.0091 Score=58.79 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=29.9
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..+|+|||+|.+|+.+|..|++ .+ .+|+|+.++...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~~ 46 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQ--------------------NG-WDVRLHEKSSEL 46 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEecCCCC
Confidence 4689999999999999999986 45 479999987543
No 308
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=96.41 E-value=0.0069 Score=60.69 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~ 22 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTN 22 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHH
T ss_pred CEEEECCcHHHHHHHHHHHH
Confidence 69999999999999999986
No 309
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=96.39 E-value=0.012 Score=62.71 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCC-----------------------------------CeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQE-----------------------------------AQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~-----------------------------------~~v~lie~~~~~ggl~~ 61 (483)
...++|+|||||+.|+.+|..|++.+.. .+|+++++.+...+
T Consensus 492 ~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~--- 568 (671)
T 1ps9_A 492 PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPG--- 568 (671)
T ss_dssp CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTT---
T ss_pred CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhc---
Confidence 3468999999999999999999987611 24455554432211
Q ss_pred cccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce----EEEe-cce---eeccCEEEEccCC
Q 011535 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS----SVSL-SEL---RQLYHVVVLAYGA 117 (483)
Q Consensus 62 ~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----~~~~-~~~---~~~yd~vvlAtG~ 117 (483)
... .......+.+.++..|++++.++.+.. .+.+ .++ ...+|.||+|+|.
T Consensus 569 ----~~l--~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~ 626 (671)
T 1ps9_A 569 ----QGL--GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 626 (671)
T ss_dssp ----TTS--CTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred ----ccc--ccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCc
Confidence 000 011223345556677999999876532 2233 233 3469999999997
No 310
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=96.32 E-value=0.0028 Score=65.97 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++++|||+|++|+.+|.+|++.+ .+|+|+|+.+..
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g--~~VlvlE~g~~~ 42 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGGPS 42 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCCCC
Confidence 4579999999999999999999998 999999998753
No 311
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=96.31 E-value=0.019 Score=56.33 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.6
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+|+|||+|.+|+-+|..|++
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~ 38 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAK 38 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 479999999999999999986
No 312
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=96.29 E-value=0.027 Score=58.80 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred cceEEEeecCCcceeecccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.||++++++.+.++. . ++ +++.+|.+.. .+|+..++.+|.||+|+|-.+
T Consensus 267 ~~gv~i~~~t~v~~l~--~-~~~g~v~GV~~~~--------------~~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 267 KRGTDIRLNSRVVRIL--E-DASGKVTGVLVKG--------------EYTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp HTTCEEESSEEEEEEE--E-C--CCEEEEEEEE--------------TTTEEEEEECSEEEECCCCCT
T ss_pred HcCCeEEecCEEEEEE--E-CCCCeEEEEEEEe--------------CCCcEEEEEcCEEEEeCCCCc
Confidence 5689999999999997 4 34 7888777653 134445799999999999655
No 313
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=96.27 E-value=0.015 Score=60.76 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=37.6
Q ss_pred cceEEEeecCCcceeecccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . ++ ++|.+|.+.. .+|+..++.+|.||+|+|-..
T Consensus 262 ~~gv~i~~~~~v~~l~--~-~~~g~v~Gv~~~~--------------~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 262 EQGIDTRLNSRVVKLV--V-NDDHSVVGAVVHG--------------KHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp HTTCCEECSEEEEEEE--E-CTTSBEEEEEEEE--------------TTTEEEEEEEEEEEECCCCCT
T ss_pred hcCCEEEeCCEEEEEE--E-CCCCcEEEEEEEe--------------CCCcEEEEEcCEEEEecCCcc
Confidence 5689999999999987 4 34 7887776643 134445799999999999654
No 314
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=96.27 E-value=0.023 Score=56.21 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.+++.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRD--------------------AGV-DVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 4589999999999999999986 454 7999998754
No 315
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=96.26 E-value=0.023 Score=58.43 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=38.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecC-eEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCG-MVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D-~vi~a~G~~~ 346 (483)
+.|+++++++.+++++ .++++++.+|.+.. .++..++.+| .||+|+|--.
T Consensus 214 ~~Gv~i~~~t~v~~L~--~~~~g~v~GV~~~~---------------~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 214 KLGVRAEYDMRVQTLV--TDDTGRVVGIVAKQ---------------YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HTTCEEECSEEEEEEE--ECTTCCEEEEEEEE---------------TTEEEEEEEEEEEEECCCCCT
T ss_pred HcCCEEEecCEeEEEE--ECCCCcEEEEEEEE---------------CCcEEEEEeCCeEEEeCCChh
Confidence 5689999999999998 42368888887654 3444579996 9999999544
No 316
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=96.24 E-value=0.017 Score=57.95 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=34.4
Q ss_pred cceEEEeecC---CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 280 QRELHFVFFR---KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 280 ~~~i~~~~~~---~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+.|+++++++ .+.++. . +++.+.+|+.. ++.++.||.||+|+|.-...
T Consensus 173 ~~Gv~i~~~t~~~~V~~i~--~-~~~~v~gV~t~------------------~G~~i~Ad~VV~AtG~~s~~ 223 (438)
T 3dje_A 173 RMGVKFVTGTPQGRVVTLI--F-ENNDVKGAVTA------------------DGKIWRAERTFLCAGASAGQ 223 (438)
T ss_dssp HTTCEEEESTTTTCEEEEE--E-ETTEEEEEEET------------------TTEEEECSEEEECCGGGGGG
T ss_pred hcCCEEEeCCcCceEEEEE--e-cCCeEEEEEEC------------------CCCEEECCEEEECCCCChhh
Confidence 5689999998 888887 3 35555544432 22479999999999976544
No 317
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.21 E-value=0.013 Score=57.54 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.5
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+|+|||+|.+|+-+|..|++ .+. +|+|+.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~--------------------~G~-~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAK--------------------RGE-EVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence 479999999999999999986 444 588888764
No 318
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=96.18 E-value=0.0068 Score=65.34 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=48.4
Q ss_pred CCCeEEEEC--ccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG--~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+||| ||+.|+.+|..|++.+ .+|+|+++.+ +.... .. +. . ...+.+.+++.|++++.++.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G--~~Vtlv~~~~-l~~~~--~~-~~--~----~~~~~~~l~~~GV~i~~~~~v 594 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVH-LANYM--HF-TL--E----YPNMMRRLHELHVEELGDHFC 594 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSC-TTHHH--HH-TT--C----HHHHHHHHHHTTCEEECSEEE
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcC--CEEEEEeccc-ccccc--cc-cc--c----HHHHHHHHHhCCCEEEcCcEE
Confidence 457999999 9999999999999999 9999999887 42211 11 21 1 123445566679999998765
No 319
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=96.17 E-value=0.019 Score=51.99 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=51.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
-..++|+|||||..|...+..|.+.+ .+|+|+++... + .+..+....+++++...
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~----------~----------~l~~l~~~~~i~~i~~~--- 83 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVS----------A----------EINEWEAKGQLRVKRKK--- 83 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCC----------H----------HHHHHHHTTSCEEECSC---
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCC----------H----------HHHHHHHcCCcEEEECC---
Confidence 46789999999999999999999999 99999985311 1 13344445556655332
Q ss_pred eEEEecceeeccCEEEEccCC
Q 011535 97 SSVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~ 117 (483)
.... ....+|.||.|||.
T Consensus 84 --~~~~-dL~~adLVIaAT~d 101 (223)
T 3dfz_A 84 --VGEE-DLLNVFFIVVATND 101 (223)
T ss_dssp --CCGG-GSSSCSEEEECCCC
T ss_pred --CCHh-HhCCCCEEEECCCC
Confidence 1111 12369999999997
No 320
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=96.16 E-value=0.012 Score=56.54 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.7
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|++ .|. +|+|+.++..
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~--------------------~G~-~V~vlE~~~~ 36 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTA--------------------AGH-QVHLFDKSRG 36 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHH--------------------CCC-cEEEEECCCC
Confidence 369999999999999999986 454 6999998753
No 321
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=96.14 E-value=0.025 Score=59.23 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
-+|+|||+|.+|+++|..+++ .|. +|.|+.++
T Consensus 28 yDVIVIGgG~AGl~AAlalAr--------------------~G~-kVlLIEk~ 59 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAAR--------------------MGA-KTAMFVLN 59 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESC
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEEec
Confidence 479999999999999999986 454 68898876
No 322
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=96.13 E-value=0.029 Score=58.93 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
-+|+|||+|.+|+++|..+++ .|. +|.|+.++
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr--------------------~G~-kVlLIEk~ 60 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAAR--------------------MGQ-QTLLLTHN 60 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESC
T ss_pred CCEEEECChHHHHHHHHHHHh--------------------CCC-CEEEEeec
Confidence 479999999999999999986 454 68899876
No 323
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=96.12 E-value=0.0068 Score=61.38 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|.|||.|.+|+++|..|.++| ++|+++|..+.. . + . ..+.++..|++++.+...
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~-------~-~------~----~~~~L~~~gi~~~~g~~~-- 65 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFD-------E-N------P----TAQSLLEEGIKVVCGSHP-- 65 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGG-------G-C------H----HHHHHHHTTCEEEESCCC--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCccc-------C-C------h----HHHHHHhCCCEEEECCCh--
Confidence 4689999999999999999999999 999999986520 0 0 1 122344568888766431
Q ss_pred EEEecceeec-cCEEEEccCCC
Q 011535 98 SVSLSELRQL-YHVVVLAYGAE 118 (483)
Q Consensus 98 ~~~~~~~~~~-yd~vvlAtG~~ 118 (483)
.+.... +|.||+++|..
T Consensus 66 ----~~~~~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 66 ----LELLDEDFCYMIKNPGIP 83 (451)
T ss_dssp ----GGGGGSCEEEEEECTTSC
T ss_pred ----HHhhcCCCCEEEECCcCC
Confidence 112234 89999999983
No 324
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=96.10 E-value=0.0089 Score=66.50 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. + . .+.++..|++++.++.+..
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G--~~Vtvv~~~~~~~--------~------~-----~~~l~~~GV~v~~~~~v~~i 342 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATG--GVVAVIDARSSIS--------A------A-----AAQAVADGVQVISGSVVVDT 342 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGT--CCSEEEESCSSCC--------H------H-----HHHHHHTTCCEEETEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcC--CcEEEEECCCccc--------h------h-----HHHHHhCCeEEEeCCEeEEE
Confidence 479999999999999999999999 8899999887541 1 1 2345667899988875421
Q ss_pred ---------EEEecc-------e---eeccCEEEEccCC
Q 011535 98 ---------SVSLSE-------L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~-------~---~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 343 ~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~ 381 (965)
T 2gag_A 343 EADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF 381 (965)
T ss_dssp EECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred eccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence 233332 2 2469999999997
No 325
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=96.08 E-value=0.029 Score=56.83 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHH--------------------hcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTL--------------------KAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~--------------------~~~~~~-~v~lie~~~~ 55 (483)
..++|+|||+|+.|+.+|..|+ +.+ . +|+|+++.+.
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g--~~~V~lv~r~~~ 200 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR--VKTVWIVGRRGP 200 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC--CCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCC--CcEEEEEEcCCh
Confidence 4689999999999999999999 445 6 7999998764
No 326
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=95.97 E-value=0.029 Score=55.45 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=31.7
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . +++.+..++.. ++ ++.+|.||+|+|...
T Consensus 186 ~~g~~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g---~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 186 EMGVDIIQNCEVTGFI--K-DGEKVTGVKTT----------------RG---TIHAGKVALAGAGHS 230 (405)
T ss_dssp HTTCEEECSCCEEEEE--E-SSSBEEEEEET----------------TC---CEEEEEEEECCGGGH
T ss_pred HCCCEEEcCCeEEEEE--E-eCCEEEEEEeC----------------Cc---eEECCEEEECCchhH
Confidence 5689999999999987 3 34544433321 22 688999999999754
No 327
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=95.94 E-value=0.028 Score=57.60 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~ 46 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRL--------------------GGV-DVMVLEQLPQ 46 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 4589999999999999999986 555 5889988753
No 328
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=95.90 E-value=0.047 Score=55.28 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc--------------------CCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA--------------------HQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~--------------------~~~~~v~lie~~~~ 55 (483)
..++|+|||+|+.|+.+|..|++. + ..+|+||++.+.
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g-~~~V~lv~r~~~ 202 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG-IQEVVIVGRRGP 202 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC-CCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCC-CcEEEEEecCCh
Confidence 468999999999999999999974 3 149999998764
No 329
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=95.89 E-value=0.0051 Score=63.55 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+++||||||+||+.+|.+|++. ++.+|+|+|+.+.
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence 368999999999999999999973 2399999999865
No 330
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=95.84 E-value=0.0032 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++++|||||+||+.+|.+|++ + .+|+|+|+.+..
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~~ 60 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBCG
T ss_pred CcccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCCc
Confidence 34799999999999999999999 7 999999998764
No 331
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.80 E-value=0.04 Score=61.71 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|+|||||..|+.+|..+.+.+ . +|+++++.+.. ..|.. ..++ +.++..|++|+.+..+.
T Consensus 331 ~~~~VvVIGgG~~g~e~A~~~~~~G--~~~Vtvv~r~~~~-------~~~~~--~~e~-----~~~~~~Gv~~~~~~~~~ 394 (1025)
T 1gte_A 331 IRGAVIVLGAGDTAFDCATSALRCG--ARRVFLVFRKGFV-------NIRAV--PEEV-----ELAKEEKCEFLPFLSPR 394 (1025)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCGG-------GCCSC--HHHH-----HHHHHTTCEEECSEEEE
T ss_pred cCCcEEEECCChHHHHHHHHHHHcC--CCEEEEEEecChh-------hCCCC--HHHH-----HHHHHcCCEEEeCCCce
Confidence 3569999999999999999999998 7 89999987521 11322 1222 23455688887765431
Q ss_pred e------E---EEec-------------ce---eeccCEEEEccCCC
Q 011535 97 S------S---VSLS-------------EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~------~---~~~~-------------~~---~~~yd~vvlAtG~~ 118 (483)
. . +.+. ++ ...+|.||+|+|..
T Consensus 395 ~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~ 441 (1025)
T 1gte_A 395 KVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSV 441 (1025)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEE
T ss_pred EEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCC
Confidence 1 0 1111 11 23599999999973
No 332
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=95.80 E-value=0.024 Score=53.87 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=26.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.|+|||+|+.|+.+|..|++ .+ .+|+|+.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar--------------------~g-~~v~lie~~~ 39 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGR--------------------AR-KQIALFDNNT 39 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEECSC
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeCCC
Confidence 69999999999999988876 34 4699998764
No 333
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=95.79 E-value=0.028 Score=57.62 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRL--------------------AGV-EVVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 34579999999999999999986 565 5889988753
No 334
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=95.78 E-value=0.039 Score=57.59 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|.+|+-+|..|++ .|. +|+||.|...
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~--------------------~G~-~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRA--------------------GGV-GALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEcCCCC
Confidence 479999999999999999986 555 6999998754
No 335
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=95.77 E-value=0.046 Score=56.88 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=38.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+.+++++.+.++. . +++++.+|++.+. .+|+..++.||.||.|+|.-.
T Consensus 182 ~~G~~i~~~~~V~~l~--~-~~g~v~gV~~~d~-------------~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 182 ARGAVALNYMKVESFI--Y-DQGKVVGVVAKDR-------------LTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HTTCEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEEEEEEEECCGGGH
T ss_pred HcCCEEEcCCEEEEEE--E-cCCeEEEEEEEEc-------------CCCceEEEECCEEEECCCcch
Confidence 6789999999999987 3 3667777766541 145556899999999999643
No 336
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=95.74 E-value=0.0072 Score=63.14 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=33.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....+++||||||.||+.+|.+|.+. ++.+|+|+|+.+
T Consensus 16 ~~~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~ 53 (583)
T 3qvp_A 16 SGRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 53 (583)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred CCCCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence 34568999999999999999999875 349999999987
No 337
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=95.67 E-value=0.0087 Score=61.54 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.++++|||+|++|+.+|.+|++.+ .+|+|+|+.+..
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~~ 40 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQLW 40 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence 479999999999999999999988 999999998753
No 338
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.59 E-value=0.036 Score=53.39 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=51.7
Q ss_pred CCCeEEEECccHHHHH-HHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~-aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|.|||.|.+|++ +|..|.++| ++|++.|..+.+ + ..+.++..|++++.+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~---------~-----------~~~~L~~~gi~v~~g~~-- 58 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYP---------P-----------MSTQLEALGIDVYEGFD-- 58 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCT---------T-----------HHHHHHHTTCEEEESCC--
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCc---------H-----------HHHHHHhCCCEEECCCC--
Confidence 4689999999999997 788889999 999999987531 1 11223445888775521
Q ss_pred eEEEeccee-eccCEEEEccCC
Q 011535 97 SSVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 97 ~~~~~~~~~-~~yd~vvlAtG~ 117 (483)
..... ..+|.||++.|.
T Consensus 59 ----~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 59 ----AAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp ----GGGGGSCCCSEEEECTTC
T ss_pred ----HHHcCCCCCCEEEECCCc
Confidence 12222 358999999997
No 339
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=95.59 E-value=0.035 Score=57.51 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|.+ .+. +|+|+.+++.
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~--------------------~G~-~v~iiE~~~~ 50 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRE--------------------LGR-SVHVIETAGD 50 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 479999999999999999986 455 7999998754
No 340
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=95.57 E-value=0.032 Score=57.67 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=27.1
Q ss_pred CceeeeccCCC--CC---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKR--GP---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~--g~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+|+.+||+++ .| .|.- .++.+|..++..|...+.+
T Consensus 301 grv~LvGDAAH~~~P~~GqG~n-~ai~DA~~La~~La~~l~g 341 (535)
T 3ihg_A 301 GRVFLAGDAAKVTPPTGGMSGN-AAVADGFDLAWKLAAVLQG 341 (535)
T ss_dssp TTEEECTTTTEECCSTTSCHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecccccCCCccCCccc-cccccHHHHHHHHHHHhcC
Confidence 67999999985 23 3444 6888898888888877654
No 341
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=95.54 E-value=0.015 Score=48.41 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....+|+|+|.|..|...|..|.+.+ ++|+++|+++
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~ 40 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSR 40 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCH
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 34578999999999999999999999 9999999863
No 342
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.53 E-value=0.017 Score=49.02 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|+|+|..|..+|..|.+.+ .+|+++|+++.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH
Confidence 35689999999999999999999998 99999998753
No 343
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=95.51 E-value=0.0095 Score=62.21 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+++||||||.||+.+|.+|++.+ ..+|+|+|+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~-~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENP-NVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTST-TSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence 3579999999999999999999874 579999999865
No 344
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=95.37 E-value=0.013 Score=61.34 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ 56 (483)
...++++|||+|++|+.+|.+|++ .+ .+|+|+|+.+..
T Consensus 22 ~~~~d~iivG~G~~g~~~a~~l~~~~~--~~v~~~e~g~~~ 60 (587)
T 1gpe_A 22 GKTYDYIIAGGGLTGLTVAAKLTENPK--IKVLVIEKGFYE 60 (587)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHTSTT--CCEEEEESSCCC
T ss_pred cccCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEecCCcc
Confidence 356899999999999999999999 56 999999998654
No 345
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=95.36 E-value=0.013 Score=60.37 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++++|||+|++|+.+|.+|++.+ .+|+|+|+.+.
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence 4579999999999999999999987 99999999864
No 346
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=95.35 E-value=0.043 Score=54.43 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|.+|+-+|..|++ .|. +|+|+.|...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~--------------------~G~-~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQ--------------------SGI-DCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 34689999999999999999986 454 6999998754
No 347
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=95.33 E-value=0.055 Score=59.18 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.6
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+|+|||+|.+|+-+|..|++
T Consensus 5 ~dVvIIGgGi~Gls~A~~La~ 25 (830)
T 1pj5_A 5 PRIVIIGAGIVGTNLADELVT 25 (830)
T ss_dssp CCEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 479999999999999999986
No 348
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=95.31 E-value=0.014 Score=60.51 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ 56 (483)
...+++|||+|++|+.+|.+|++. + .+|+|+|+.+..
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~--~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPA--VSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTT--SCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC--CCEEEEecCCcC
Confidence 458999999999999999999997 5 999999998654
No 349
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=95.24 E-value=0.11 Score=54.57 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=32.9
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.+||+|++|++. |..|.. .|..+|..++.|++..+.+.+
T Consensus 377 ~~~gLf~AGqi~-g~~Gy~-eA~a~G~~AG~naa~~~~~~~ 415 (641)
T 3cp8_A 377 PVENLFFAGQIN-GTSGYE-EAAAQGLMAGINAVRKILGKE 415 (641)
T ss_dssp SSBTEEECSGGG-TBCCHH-HHHHHHHHHHHHHHHHHHTCC
T ss_pred CcCCEEEEEeec-CCccHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 479999999994 566776 799999999999999988753
No 350
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=95.21 E-value=0.023 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|..|...|..|.+.+ .+|+++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence 468999999999999999999998 999999975
No 351
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=95.20 E-value=0.086 Score=56.19 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+|+|||+|.+|+-+|..|++ .| .+|+|+.++.
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~--------------------~G-~~V~vlEk~~ 305 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLR--------------------RG-WQVTLYCADE 305 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeCCC
Confidence 689999999999999999986 45 4799998853
No 352
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=95.19 E-value=0.12 Score=53.32 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=28.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||||.+|+-+|..|++. + ..| .+|+|+.+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~----------------~-~~G-~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRA----------------L-QQQ-ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----------------C-CSS-CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhh----------------c-CCC-CEEEEECCCC
Confidence 35899999999999999999850 0 023 4799999864
No 353
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.17 E-value=0.028 Score=57.50 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.+|+|||+|++|+.+|..|.+ . .+|+|+.+.+..
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~--------------------~--~~V~vie~~~~~ 142 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQ--------------------Y--LTVALIEERGWL 142 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTT--------------------T--CCEEEECTTSSS
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------c--CCEEEEeCCCCC
Confidence 479999999999999999986 3 689999987643
No 354
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.15 E-value=0.027 Score=47.59 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|+|+|..|...+..|.+.+ ++|+++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRG--QNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Confidence 3568999999999999999999998 999999975
No 355
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.02 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|+|+|..|...|..|.+.+ ++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence 468999999999999999999999 999999975
No 356
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=95.01 E-value=0.17 Score=49.20 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCeEEEEcCCchHHHHHHHHhc
Q 011535 159 TDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.++|+|||+|.+|+-+|..|++
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La~ 30 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLSA 30 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT
T ss_pred cCCEEEECCcHHHHHHHHHHhC
Confidence 4689999999999999999984
No 357
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=94.89 E-value=0.07 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|++ .|. +|+|+.|++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~--------------------~G~-~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK--------------------HGI-KVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 379999999999999999986 565 6999988753
No 358
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=94.85 E-value=0.2 Score=51.94 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.1
Q ss_pred CceeeeccCCC--CCc---chhHhhHHHHHHHHHHHHHHHhcC
Q 011535 381 NGLYVCGWLKR--GPT---GIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 381 p~vya~Gd~~~--g~~---~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+|+.+||+++ .|. |.- .++.+|..++..|...+.+.
T Consensus 309 grv~L~GDAAH~~~P~~GqG~n-~gi~DA~~La~~La~~l~g~ 350 (549)
T 2r0c_A 309 GRVFLTGDAAHTLSPSGGFGMN-TGIGSAADLGWKLAATLRGW 350 (549)
T ss_dssp TTEEECGGGTEECCCGGGHHHH-HHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEccccccCCCccCCccc-cccHHHHHHHHHHHHHHcCC
Confidence 57999999985 233 333 67888888888888877653
No 359
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=94.80 E-value=0.062 Score=51.82 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=18.6
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 3 dV~IIGaG~aGl~~A~~L~~ 22 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRR 22 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHS
T ss_pred cEEEECCcHHHHHHHHHHHh
Confidence 79999999999999999974
No 360
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=94.76 E-value=0.011 Score=61.48 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.++++|||||.||+.+|.+|++. ++.+|+|+|+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 36899999999999999999983 34999999998654
No 361
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=94.71 E-value=0.0097 Score=60.36 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+.++|+|+|+|-.|.+.|..|...+ ++|++||+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 4679999999999999999999998 9999999874
No 362
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=94.70 E-value=0.04 Score=54.72 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+|+|||+|.+|+-+|..|++
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~ 57 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQ 57 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHh
Confidence 479999999999999999986
No 363
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=94.48 E-value=0.16 Score=52.69 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||||.+|+-+|..|++. + ..+ .+|+||.+..
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~----------------~-~~G-~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKA----------------L-QGT-ADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----------------T-TTS-SEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhh----------------c-CCC-CcEEEEeCCC
Confidence 46899999999999999999850 0 023 4799999864
No 364
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=94.46 E-value=0.032 Score=55.84 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+.+.+|+|||.|+.||..|..|++.| ++|+.||-++.
T Consensus 19 ~~m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~ 55 (444)
T 3vtf_A 19 SHMASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPS 55 (444)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHH
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHH
Confidence 35679999999999999999999999 99999998754
No 365
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=94.44 E-value=0.13 Score=54.95 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.+..
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~--------------------~G~-~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQR--------------------RGA-VVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHH--------------------CCC-cEEEEeCCC
Confidence 3589999999999999999986 454 688888853
No 366
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=94.42 E-value=0.087 Score=53.52 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=30.5
Q ss_pred CeeeecCCCCCCcccCceeeeccCCC-CCcc---hhHhhHHHHHHHHHHHHHHH
Q 011535 366 GRVLKNISGDSSQVENGLYVCGWLKR-GPTG---IIATNLYCAEETVASISEDL 415 (483)
Q Consensus 366 G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~---~~~~a~~~g~~~a~~I~~~l 415 (483)
|.|.+|.+ ++|++|||||+|||+. +..| ..+.+..+|...+..+..++
T Consensus 317 GGI~vd~~--~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~ 368 (472)
T 2e5v_A 317 GGIRVNIR--GESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYV 368 (472)
T ss_dssp CEEECCTT--CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTT
T ss_pred CCeEECCC--CccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHH
Confidence 55666766 7899999999999975 4321 22245566555555544444
No 367
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=94.35 E-value=0.096 Score=52.91 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=50.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|..|...+..|.+.| .+|+++++... + .+.++....+++++.+.-
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~~~----------~----------~~~~l~~~~~i~~~~~~~--- 65 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFI----------P----------QFTVWANEGMLTLVEGPF--- 65 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCC----------H----------HHHHHHTTTSCEEEESSC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCCCC----------H----------HHHHHHhcCCEEEEECCC---
Confidence 5689999999999999999999999 99999986421 1 133334444566654321
Q ss_pred EEEecceeeccCEEEEccCC
Q 011535 98 SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~ 117 (483)
...+ ...+|.||.|||.
T Consensus 66 --~~~~-l~~~~lVi~at~~ 82 (457)
T 1pjq_A 66 --DETL-LDSCWLAIAATDD 82 (457)
T ss_dssp --CGGG-GTTCSEEEECCSC
T ss_pred --Cccc-cCCccEEEEcCCC
Confidence 1111 2368999999996
No 368
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=94.30 E-value=0.27 Score=51.56 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=35.2
Q ss_pred cce-EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRE-LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~-i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.+ +++++++.+.++. . +++++.++...+. .+|+..++.++.||+|+|-
T Consensus 146 ~~gnv~i~~~~~v~~l~--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 146 QFPQIQRFDEHFVLDIL--V-DDGHVRGLVAMNM-------------MEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp TCTTEEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTTEEEEEECSCEEECCCC
T ss_pred hCCCcEEEeCCEEEEEE--E-eCCEEEEEEEEEc-------------CCCcEEEEEcCeEEECCCC
Confidence 456 9999999999987 4 3566666654320 1344457999999999995
No 369
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=94.19 E-value=0.17 Score=53.27 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=36.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. . +++++.++...+. .+|+...+.++.||+|+|-
T Consensus 167 ~~gv~i~~~~~v~~Li--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlATGG 215 (621)
T 2h88_A 167 RYDTSYFVEYFALDLL--M-ENGECRGVIALCI-------------EDGTIHRFRAKNTVIATGG 215 (621)
T ss_dssp TSCCEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEEEEEEEECCCC
T ss_pred hCCCEEEEceEEEEEE--E-ECCEEEEEEEEEc-------------CCCcEEEEEcCeEEECCCc
Confidence 5789999999999987 4 3677777765431 1455568999999999995
No 370
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=93.96 E-value=0.054 Score=44.71 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|+|+|..|..+|..|.+.+ .+|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 468999999999999999999998 899999875
No 371
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.96 E-value=0.057 Score=47.03 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~ 54 (483)
...+|+|+|+|..|..+|..|.+. + ++|+++|+++
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~ 73 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYG--KISLGIEIRE 73 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCH
Confidence 356899999999999999999998 9 9999999763
No 372
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=93.95 E-value=0.24 Score=51.75 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=36.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. .++++++.++.+.+. .+|+..++.++.||+|+|-
T Consensus 155 ~~gv~i~~~~~v~~L~--~~~~g~v~Gv~~~~~-------------~~g~~~~i~A~~VVlAtGg 204 (588)
T 2wdq_A 155 KNHTTIFSEWYALDLV--KNQDGAVVGCTALCI-------------ETGEVVYFKARATVLATGG 204 (588)
T ss_dssp HTTCEEEETEEEEEEE--ECTTSCEEEEEEEET-------------TTCCEEEEEEEEEEECCCC
T ss_pred hCCCEEEeCcEEEEEE--ECCCCEEEEEEEEEc-------------CCCeEEEEEcCEEEECCCC
Confidence 4589999999999997 412577777765431 1345557999999999995
No 373
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=93.84 E-value=0.062 Score=56.45 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..++++|||+|..|...|..|++.| .+|.+||++++.||-+
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g--~~vl~id~~~~~gg~~ 47 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNW 47 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGG
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCCcccCcc
Confidence 3689999999999999999999999 9999999999988864
No 374
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=93.83 E-value=0.074 Score=42.14 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|+|+|..|..++..|.+.+ ..+|++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCC
Confidence 468999999999999999999986 3689999875
No 375
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=93.62 E-value=0.054 Score=48.74 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|+|..|...|..|.+.+ ++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 47999999999999999999998 9999999753
No 376
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=93.57 E-value=0.076 Score=50.68 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=33.6
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
......++|.|||.|.-|...|..|++.| ++|+++|+++
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~ 54 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTL 54 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSG
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 33456689999999999999999999999 9999999875
No 377
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=93.36 E-value=0.068 Score=49.89 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||..|...+..|.+.| .+|+||++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence 5789999999999999999999999 9999999754
No 378
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=93.28 E-value=0.07 Score=53.69 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||.|.+|+++|..|.++| ++|+++|..... |.. ..++ .|+++..+...
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~---------~~~-----------~~l~-~G~~~~~g~~~-- 58 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTP---------PGL-----------DKLP-EAVERHTGSLN-- 58 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTT--CCCEEEESSSSC---------TTG-----------GGSC-TTSCEEESSCC--
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCC--CEEEEEECCCCc---------chh-----------HHhh-CCCEEEECCCc--
Confidence 4578999999999999999999999 999999987542 210 2234 56666544311
Q ss_pred EEEecceeeccCEEEEccCC
Q 011535 98 SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+.. ..+|.||+++|.
T Consensus 59 ---~~~~-~~~d~vV~s~gi 74 (439)
T 2x5o_A 59 ---DEWL-MAADLIVASPGI 74 (439)
T ss_dssp ---HHHH-HTCSEEEECTTS
T ss_pred ---HHHh-ccCCEEEeCCCC
Confidence 1111 258899999986
No 379
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=93.21 E-value=0.25 Score=50.41 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=33.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+.+++++.+.++. . ++.+..|++.+. .+|+..++.+|.||.|+|.-.
T Consensus 161 ~~Gv~i~~~~~V~~l~--~--~~~~~~V~~~d~-------------~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 161 RKGGEVLTRTRATSAR--R--ENGLWIVEAEDI-------------DTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HTTCEEECSEEEEEEE--E--ETTEEEEEEEET-------------TTCCEEEEEESCEEECCGGGH
T ss_pred HcCCEEEcCcEEEEEE--E--eCCEEEEEEEEC-------------CCCCEEEEECCEEEECCChhH
Confidence 5688888888888886 3 334445544320 134445799999999999754
No 380
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=93.10 E-value=0.06 Score=49.07 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=33.1
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++.++||++||+..|+ ++. .|+.+|..+|..|+++|+.+
T Consensus 291 ~~~~~~v~l~GDa~~g~-gv~-~A~~sG~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 291 SDADLGIYVCGDWCLSG-RVE-GAWLSGQEAARRLLEHLQLE 330 (336)
T ss_dssp EETTTTEEECCGGGTTS-SHH-HHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCEEEEecccCCc-CHH-HHHHHHHHHHHHHHHHhhcc
Confidence 34678999999987765 455 79999999999999999865
No 381
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=92.97 E-value=0.11 Score=51.27 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+.+|+|||+|.+|+.+|..+...| .+|+++|+.+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~ 224 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPA 224 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 4579999999999999999999999 99999998753
No 382
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=92.92 E-value=0.23 Score=49.92 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..-+|.|||.|.-|+..|..|++.| ++|+++|+++..
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~k 43 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARK 43 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTT
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHH
Confidence 3469999999999999999999999 999999998763
No 383
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=92.71 E-value=0.14 Score=48.66 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 12 ~~~~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~ 48 (302)
T 1f0y_A 12 KIIVKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTE 48 (302)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 334578999999999999999999999 9999999864
No 384
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=92.68 E-value=0.32 Score=51.36 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=28.4
Q ss_pred cCceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
..+||.+||+++. | .|.- .++.+|..++..|...+.+.
T Consensus 341 ~gRV~L~GDAAH~~~P~~GqG~n-~ai~DA~nLawkLa~vl~g~ 383 (639)
T 2dkh_A 341 LPRVFIAGDACHTHSPKAGQGMN-FSMQDSFNLGWKLAAVLRKQ 383 (639)
T ss_dssp CCCEEECGGGTEECCGGGCCTTH-HHHHHHHHHHHHHHHHHTTS
T ss_pred cCcEEEEecccccCCCcccccch-hhHHHHHHHHHHHHHHHcCC
Confidence 4679999999852 2 3444 68899999988888877653
No 385
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=92.61 E-value=0.11 Score=50.74 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+.+|+|||+|.+|+.+|..|...| .+|+++|+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 4679999999999999999999999 9999999875
No 386
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=92.25 E-value=0.14 Score=48.91 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~ 53 (483)
..++|+|||+|..|...|..|++.+ . +|+++|++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~ 41 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIA 41 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCC
Confidence 3579999999999999999999998 7 99999875
No 387
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=92.20 E-value=0.16 Score=51.04 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=33.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|.|||+|.-|...|..|++.| ++|+++|+++.
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e 88 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQ 88 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHH
Confidence 34579999999999999999999999 99999998754
No 388
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=92.08 E-value=0.17 Score=48.69 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.+++|+|||+|..|...|..|+..+ + +|+|+|.++
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~ 43 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVK 43 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCh
Confidence 4579999999999999999999988 6 899999764
No 389
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=91.94 E-value=0.26 Score=50.33 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCCCCeEEEECccHHHHH-HHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 16 SSNPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~-aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+...++|.|||.|-+|++ +|..|.++| ++|++.|.... . ..+.++..|++++.+..
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~-----------------~----~~~~l~~~gi~~~~g~~ 75 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPN-----------------S----VTQHLTALGAQIYFHHR 75 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCC-----------------H----HHHHHHHTTCEEESSCC
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCC-----------------H----HHHHHHHCCCEEECCCC
Confidence 445689999999999997 699999999 99999996531 1 11234456888776521
Q ss_pred EceEEEecceeeccCEEEEccCCC
Q 011535 95 LGSSVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+....+|.||++.|..
T Consensus 76 -------~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 76 -------PENVLDASVVVVSTAIS 92 (494)
T ss_dssp -------GGGGTTCSEEEECTTSC
T ss_pred -------HHHcCCCCEEEECCCCC
Confidence 11123589999999973
No 390
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=91.58 E-value=0.18 Score=48.20 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+++|+|||+|..|..+|..|+..+.-.+++++|.+.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4579999999999999999999987222899999763
No 391
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=91.57 E-value=0.094 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|..|...+..|.+.+ .+|++++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 679999999999999999999887 889999875
No 392
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=91.55 E-value=0.18 Score=49.90 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||+|.+|+.++..+...| .+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~ 206 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPE 206 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 3689999999999999999999999 89999998753
No 393
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=91.41 E-value=0.21 Score=49.15 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||+|.+|+.++..+...| .+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 4689999999999999999999999 89999998753
No 394
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=91.21 E-value=0.24 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.123 Sum_probs=31.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCH
Confidence 478999999999999999999999 9999999864
No 395
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=91.18 E-value=0.24 Score=48.16 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|+|+|||||..|..+++.+.+.| ++|+++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 479999999999999999999999 99999998765
No 396
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=91.12 E-value=0.22 Score=47.60 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=30.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|+|||+|.-|.+.|..|++.+ .+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTG--HCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTT--CEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 68999999999999999999998 999999875
No 397
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=91.04 E-value=0.25 Score=47.38 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+..++|+|||+|..|.++|..|+..+--.+++++|..
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 3467999999999999999999998711289999864
No 398
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=91.01 E-value=0.26 Score=45.07 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....++|.|||+|.-|...|..|++.+ ++|+++++++
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~ 52 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDP 52 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCh
Confidence 346789999999999999999999999 9999999875
No 399
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=91.00 E-value=0.24 Score=48.38 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
.-...+|||+|||.||+.+|..|...| . +|+++|++
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~G--a~~I~v~D~~ 221 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAG--ATKVTVVDKF 221 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcC--CCeEEEEECC
Confidence 345679999999999999999999998 8 99999987
No 400
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=90.93 E-value=0.28 Score=43.72 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|.|||+|.-|.+.|..|.+.+ .+|+++++++.
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~ 53 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ 53 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 35679999999999999999999998 99999998764
No 401
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=90.76 E-value=0.27 Score=45.97 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||+|.-|.+.|..|.+.+ ++|+++++++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCcc
Confidence 47999999999999999999999 99999998764
No 402
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=90.76 E-value=0.28 Score=46.78 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
+..++|+|||+|..|...|..|+..+ + +|+++|..
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~ 41 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIP 41 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEecc
Confidence 34579999999999999999999998 7 99999976
No 403
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=90.75 E-value=0.24 Score=45.54 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.++|+|||+|-.|..+|..|++.| + +++|+|+..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~G--v~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAG--VGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcC--CCeEEEEcCCC
Confidence 579999999999999999999999 7 899999875
No 404
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=90.69 E-value=0.25 Score=46.80 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|.|||+|..|...|..|.+.+ ++|++++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQW 35 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 368999999999999999999998 999999875
No 405
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=90.67 E-value=0.28 Score=47.78 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|+|+|.+|..++..|...| .+|+++++++
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~ 200 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINV 200 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 3489999999999999999999999 8999998763
No 406
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=90.62 E-value=0.25 Score=46.86 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~ 54 (483)
++|+|||+|..|.+.|..|+..+ + +|+++|.++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g--~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRG--SCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCCH
Confidence 48999999999999999999988 6 999999753
No 407
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=90.58 E-value=0.22 Score=52.74 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhc------CCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKA------HQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~------~~~~~v~lie~~~~ 55 (483)
..+|+|||||+|||+||+.|++. + .+|+|+|+.+.
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG--~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPE--AKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTT--CCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCC--CcEEEEEecCC
Confidence 47899999999999999999997 7 99999999753
No 408
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=90.55 E-value=0.28 Score=47.82 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=32.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
.-...+|+|+|+|-+|..+|..|...| . +|+++|+.
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G--~~~I~v~Dr~ 225 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRK 225 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECC
Confidence 346789999999999999999999998 7 89999986
No 409
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=90.54 E-value=0.26 Score=47.97 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|.|||+|.-|.+.|..|++.+ .+|+++++++
T Consensus 27 ~~~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~ 62 (356)
T 3k96_A 27 PFKHPIAILGAGSWGTALALVLARKG--QKVRLWSYES 62 (356)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCH
T ss_pred ccCCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 34579999999999999999999999 9999999864
No 410
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=90.52 E-value=0.26 Score=50.06 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||+|..|+..|..|++.| ++|+++|+++.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~~ 42 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQA 42 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCHH
Confidence 4579999999999999999999999 99999998753
No 411
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=90.47 E-value=0.27 Score=46.67 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=30.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+|||+|..|.+.|..++..+.-.+++|+|.++
T Consensus 12 ~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 34579999999999999999999988222999999765
No 412
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=90.37 E-value=0.35 Score=47.58 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=34.6
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+....++|+|||+|..|..++..+.+.| ++|+++|..+.
T Consensus 9 ~~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~ 48 (389)
T 3q2o_A 9 RIILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKN 48 (389)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTT
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCC
Confidence 33446689999999999999999999999 99999997754
No 413
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=90.31 E-value=0.31 Score=46.56 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.++|+|||+|..|...|..|++.+ + +|+++|+++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCc
Confidence 468999999999999999999998 7 899999864
No 414
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=90.01 E-value=0.25 Score=47.11 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...+|+|||+|.-|-.-|..++..| ++|+|+|.++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~ 39 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 3578999999999999999999999 9999999775
No 415
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=89.98 E-value=0.25 Score=47.22 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 5 ~~~kI~vIGaG~MG~~iA~~la~~G--~~V~l~d~~~ 39 (319)
T 2dpo_A 5 AAGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCH
T ss_pred CCceEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 3478999999999999999999999 9999999875
No 416
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=89.97 E-value=0.3 Score=47.01 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=30.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|.-|.+.|..|++.+ .+|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAG--EAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh
Confidence 468999999999999999999999 899999863
No 417
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=89.95 E-value=0.3 Score=49.19 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||+|..|+..|..|++.| ++|+++|+++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHH
Confidence 68999999999999999999999 99999998753
No 418
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=89.90 E-value=0.54 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|-.|..+|..|++.| + +++|+|...
T Consensus 35 ~~~~VlivG~GGlG~~ia~~La~~G--vg~itlvD~d~ 70 (346)
T 1y8q_A 35 RASRVLLVGLKGLGAEIAKNLILAG--VKGLTMLDHEQ 70 (346)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEEECCC
Confidence 3579999999999999999999999 7 899998764
No 419
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=89.89 E-value=0.36 Score=46.18 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++|+|||+|..|.+.|..|+..+ + +|+|+|..+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCc
Confidence 4579999999999999999999998 6 999999764
No 420
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=89.77 E-value=0.37 Score=46.23 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
+++|+|||+|..|...|..|+..+ + +|+++|.++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCH
Confidence 369999999999999999999998 6 899999764
No 421
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=89.69 E-value=0.27 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...+|+|||.|..|..+|..|.+.+ ++|++||+++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~ 37 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDP 37 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 3568999999999999999999999 9999999874
No 422
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=89.64 E-value=0.39 Score=46.97 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|+|+|..|..+|..|...| .+|+++|+++
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~ 199 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVNH 199 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCH
Confidence 4589999999999999999999999 8999998753
No 423
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=89.56 E-value=0.4 Score=44.67 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++|+|.|+|+.|-..+..|.+.+ ++|+++.+.+.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence 478999999999999999999998 99999998753
No 424
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=89.55 E-value=0.37 Score=43.08 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|.|||+|..|...|..|.+.+ ++|++++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSG--FKVVVGSRN 60 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 4578999999999999999999998 899999875
No 425
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=89.53 E-value=0.42 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.++|+|||+|..|...|..|+..+ + +|+|+|.++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCH
Confidence 468999999999999999999987 6 899999764
No 426
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=89.52 E-value=0.36 Score=44.91 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+++|+|.|+|+.|-..+..|.+++ ++|+++.|++
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcCh
Confidence 479999999999999999999998 9999998764
No 427
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=89.46 E-value=0.32 Score=49.17 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~-~v~lie~~~~ 55 (483)
..++|.|||+|.-|+..|..|++. | + +|+++|+++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChh
Confidence 347999999999999999999999 8 9 9999999876
No 428
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=89.44 E-value=0.33 Score=49.27 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|.|||.|..|+..|..|++.+++++|+++|+++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~ 45 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA 45 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 34699999999999999999999944499999998753
No 429
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=89.28 E-value=0.4 Score=45.36 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|++.| ++|+++|+++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 40 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNP 40 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCH
Confidence 4578999999999999999999999 9999998764
No 430
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=89.28 E-value=0.43 Score=46.81 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||+|..|..+|..+...| .+|+++|+++
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 4689999999999999999999998 8999998753
No 431
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=89.26 E-value=0.38 Score=45.11 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||.|.-|...|..|.+.+ ++|+++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCHH
Confidence 68999999999999999999999 99999998753
No 432
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=89.25 E-value=0.46 Score=44.09 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++++|||+|-+|-.++..|.+.| .+|+|++|.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 689999999999999999999999 9999998874
No 433
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=89.25 E-value=0.42 Score=44.44 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++++|+|+|-+|..+|..|++.| .+|++++|+
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT 151 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECC
Confidence 4689999999999999999999999 999999875
No 434
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=89.24 E-value=0.39 Score=46.46 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=30.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|..|...|..|.+.+ ++|++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 368999999999999999999998 999999875
No 435
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=89.18 E-value=0.46 Score=45.39 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++|+|||+|..|.+.|..|+..+ + +++++|..+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~--~~~v~l~Di~~ 39 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQ--LGDVVLFDIAQ 39 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCh
Confidence 3579999999999999999999987 6 999999764
No 436
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=89.15 E-value=0.27 Score=46.80 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=29.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|+|||+|--|.+.|..|++.+ .+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSG--EDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTS--CCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcC
Confidence 68999999999999999999998 899999875
No 437
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=89.11 E-value=0.43 Score=43.01 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+|.|| |..|..++..|++++ ++|+++.|++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~ 55 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNE 55 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECCh
Confidence 35689999998 999999999999999 9999998864
No 438
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=89.08 E-value=0.45 Score=45.22 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=29.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|..|...|..|++.+-..+|+++|+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 47999999999999999999862238999999864
No 439
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=89.00 E-value=0.2 Score=51.03 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=27.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
|+|+|||+|..|+-+|..|++ .| .+|+|+.+++.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~--------------------~G-~~V~VlEa~~~ 35 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQA--------------------AG-IPVLLLEQRDK 35 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--------------------TT-CCEEEECCC--
T ss_pred CCEEEECCcHHHHHHHHHHHH--------------------CC-CcEEEEccCCC
Confidence 689999999999999999987 44 46888888753
No 440
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=88.93 E-value=0.48 Score=44.76 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.||| +|.-|.+.|..|.+.+ ++|+++++++
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCc
Confidence 346899999 9999999999999998 8999998764
No 441
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=88.89 E-value=0.33 Score=48.03 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=29.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|++ .|.++|+|+.|++.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CCCCeEEEEECCCC
Confidence 479999999999999999986 56655999998754
No 442
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=88.78 E-value=0.47 Score=45.40 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+|..|.++|..|+..+---+++|+|..
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 457999999999999999999998711289999864
No 443
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=88.55 E-value=0.47 Score=44.80 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
..++++|||+|.+|..+|..|.+.+ . +|++++|.
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~ 174 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTA--AERIDMANRT 174 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSS
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence 5689999999999999999999998 7 89999876
No 444
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=88.44 E-value=0.36 Score=45.51 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|--|.+.|..|.+.+ .+|++++|++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCC--CeEEEEEecc
Confidence 68999999999999999999999 8999999874
No 445
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=88.40 E-value=0.47 Score=47.24 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|.|||.|.-|+..|..|++ + ++|+++|+++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~ 69 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQA 69 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHH
Confidence 34699999999999999999998 8 99999998854
No 446
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=88.29 E-value=0.63 Score=40.59 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.2
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|+|| |..|..++..|.+.+ .+|+++++++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~ 38 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSS 38 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChh
Confidence 68999998 999999999999998 99999998753
No 447
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=88.21 E-value=0.58 Score=41.38 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.0
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|| |..|..++..|++++ ++|+++.|++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCc
Confidence 47999996 999999999999999 9999998863
No 448
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=88.02 E-value=0.45 Score=44.82 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||+|.-|-..|..|+ .| ++|+++|+++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG--~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SK--HEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cC--CEEEEEECCH
Confidence 5689999999999999999999 98 9999999764
No 449
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=88.00 E-value=0.37 Score=48.23 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=31.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||+|..|+..|..|++.| ++|+++|+++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSST 34 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
Confidence 47999999999999999999999 99999998753
No 450
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=87.89 E-value=0.5 Score=44.54 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~ 54 (483)
++|+|||+|..|.+.|..|+..+ . +++|+|..+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~--~~~~v~L~D~~~ 35 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNL--DVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS--CCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEECCh
Confidence 48999999999999999999987 5 899998754
No 451
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=87.84 E-value=0.58 Score=44.45 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=29.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
++|+|||+|..|...|..|+..+ + +|+++|.++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g--~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKE--LGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCeEEEEeCCc
Confidence 68999999999999999999987 5 799998753
No 452
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=87.74 E-value=0.51 Score=45.10 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=29.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~ 53 (483)
++|+|||+|..|.+.|..|++.+ + +|+++|++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~ 34 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVD 34 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCC
Confidence 47999999999999999999998 7 99999875
No 453
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=87.72 E-value=0.46 Score=44.23 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++++|+|+|-+|..+|..|.+.+ .+|++++|.
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~ 151 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRT 151 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECC
Confidence 4689999999999999999999999 999999876
No 454
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=87.71 E-value=0.62 Score=43.99 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.-..++|.|||+|..|..+|..|...+ .+|+++++.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~ 189 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARS 189 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECC
Confidence 345789999999999999999999998 899999875
No 455
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=87.67 E-value=0.64 Score=43.73 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|.|||+|..|..+|..|...| .+|+++++.
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~ 187 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG--AKVKVGARE 187 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECC
Confidence 45789999999999999999999998 899999875
No 456
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=87.66 E-value=0.6 Score=41.33 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=29.7
Q ss_pred CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+||| +|..|...|..|.+.+ ++|+++++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 3799999 9999999999999998 8999998753
No 457
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=87.56 E-value=0.38 Score=45.40 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|.|||.|.-|...|..|++.+ ++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence 468999999999999999999999 99999998764
No 458
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=87.50 E-value=0.72 Score=43.18 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=31.7
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+||+|.|| |+.|-..+.+|.++| ++|+++.|++..
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~~~ 36 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKPGP 36 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCc
Confidence 58999998 999999999999999 999999887643
No 459
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=87.43 E-value=0.62 Score=44.22 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|.|||+|.-|...|..|.+.+ ++|+++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 478999999999999999999998 8999998764
No 460
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=87.39 E-value=0.48 Score=46.87 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=29.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||+|..|+..|..|++ + ++|+++|+++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCH
Confidence 479999999999999999999 8 9999999875
No 461
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=87.36 E-value=0.33 Score=43.60 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEE-EecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~l-ie~~~ 54 (483)
..++|.|||+|.-|...|..|.+.+ ++|++ +++++
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~ 57 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGP 57 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCH
Confidence 3579999999999999999999998 89988 77653
No 462
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=87.33 E-value=0.72 Score=43.98 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+++|+|||+|..|.++|..|+..+.-.++.++|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 357999999999999999999988622489999864
No 463
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=87.32 E-value=0.58 Score=36.68 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.++|+|+|+|.+|..++..|.+ .+..+|+++.|+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~--------------------~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT--------------------SSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--------------------CSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHh--------------------CCCceEEEEeCCH
Confidence 4689999999999999999886 5656788888863
No 464
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=87.30 E-value=0.59 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=29.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|..|.+.|..|+..+--.+++++|..+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 48999999999999999999987112899999764
No 465
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=87.28 E-value=0.62 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+++|.|||+|.-|...|..|++.| .+|+++++.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENG--EEVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 4679999999999999999999999 999999875
No 466
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=87.28 E-value=0.68 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~ 53 (483)
..++|+|||+|..|..+|..|+..+ + +++++|..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g--~~~ev~L~Di~ 55 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKD--LADEVALVDVM 55 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHC--CCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEECC
Confidence 4589999999999999999999987 5 89999864
No 467
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=87.27 E-value=0.39 Score=44.97 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||.|.-|...|..|++.+ ++|+++++++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence 58999999999999999999999 9999999875
No 468
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=87.23 E-value=0.67 Score=46.78 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 4578999999999999999999999 9999999864
No 469
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=87.23 E-value=0.81 Score=44.09 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+ |..|..+|..++.++...+++|+|..
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4579999997 99999999999998733489999864
No 470
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=87.19 E-value=0.64 Score=44.09 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+++|+|||+|--|.+.|..|. .+ .+|++++++
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRR 33 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cC--CceEEEECC
Confidence 368999999999999999999 88 999999875
No 471
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=87.11 E-value=0.55 Score=47.33 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=32.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++++|+|+|..|..+|..|+..| .+|+++|++
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~ 297 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEID 297 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 45789999999999999999999999 999999875
No 472
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=87.10 E-value=0.72 Score=44.23 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|+|||+|..|.+.|..|+.++--.+++|+|..
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 4568999999999999999999998722389999864
No 473
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=87.01 E-value=0.58 Score=46.33 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=32.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+|||.|+.|..+|..|...| .+|+++|+++
T Consensus 218 L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp 253 (435)
T 3gvp_A 218 FGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDP 253 (435)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCCh
Confidence 45789999999999999999999998 9999999865
No 474
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=87.01 E-value=0.64 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...|+|+|||+|-+|..++..|++..+..+|+++-|.+.
T Consensus 244 ~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~ 282 (501)
T 4b63_A 244 SKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA 282 (501)
T ss_dssp TSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 467899999999999999999998755589999988764
No 475
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=87.01 E-value=0.74 Score=38.56 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|+|+|.+|..+|..|.+ .+. +|+++.|+.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~--------------------~g~-~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASS--------------------SGH-SVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEECCH
Confidence 56899999999999999999975 454 799988864
No 476
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=87.00 E-value=0.56 Score=44.79 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|++.| ++|+++++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 64 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTP 64 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCH
Confidence 4569999999999999999999999 9999998764
No 477
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=86.93 E-value=0.52 Score=44.47 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|.|||.|.-|...|..|.+.+ ++|+++++++
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~d~~~ 36 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQ 36 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSH
T ss_pred CCEEEEEeecHHHHHHHHHHHhCC--CeEEEEcCCH
Confidence 478999999999999999999999 9999998763
No 478
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=86.92 E-value=0.74 Score=43.79 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-++|..|++.| . +|+|+.|.
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~G--a~~V~i~nR~ 187 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDG--VKEISIFNRK 187 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECS
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCC--CCEEEEEECC
Confidence 35689999999999999999999998 8 89999886
No 479
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=86.86 E-value=0.55 Score=42.25 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhc
Q 011535 158 STDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+++|+|||||.+|...|..|.+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~ 52 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQ 52 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 480
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=86.83 E-value=0.74 Score=43.09 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-.++..|++.+ . +|+|++|.
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G--~~~v~i~~R~ 160 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHG--VQKLQVADLD 160 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEECC
Confidence 35689999999999999999999998 8 69999876
No 481
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=86.80 E-value=0.29 Score=44.35 Aligned_cols=34 Identities=6% Similarity=0.036 Sum_probs=29.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|+|+|..|...|..|.+.+ + |+++|+++
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~ 41 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSE--V-FVLAEDEN 41 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCH
Confidence 3568999999999999999999988 8 99998763
No 482
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=86.77 E-value=0.77 Score=40.76 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.9
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|.|| |..|...+..|++++ .+|+++.|++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDP 34 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEecc
Confidence 47999998 999999999999999 9999998753
No 483
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=86.75 E-value=0.85 Score=43.44 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+|..|.+.|..|+..+...+|+++|.+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~ 40 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 357999999999999999999887633489999875
No 484
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=86.75 E-value=0.63 Score=44.58 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++|+|.|| |+.|...+..|++.+ ++|+++++.+..
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~ 55 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG 55 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 35689999998 999999999999999 999999987643
No 485
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=86.60 E-value=0.49 Score=45.42 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.8
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCC-----CCeEEEEecC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQ-----EAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~-----~~~v~lie~~ 53 (483)
.+++|+|+|| |..|...+..|...+- ..+|.++|..
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~ 45 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP 45 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence 4579999998 9999999999988761 0278888764
No 486
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=86.45 E-value=0.7 Score=41.16 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++|+|.|| |..|...+..|.+.+ .+|++++|++.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 39 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPE 39 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcc
Confidence 478999996 999999999999999 99999998753
No 487
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=86.37 E-value=0.64 Score=44.41 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=29.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
++|.|||+|..|...|..|.+.+ ++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEc
Confidence 47999999999999999999999 99999987
No 488
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=86.34 E-value=0.84 Score=43.21 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|.+.+ ++|+++|+++
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G--~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQG--KRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 4578999999999999999999999 9999998874
No 489
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=86.21 E-value=0.71 Score=45.35 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=29.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.|++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQ--------------------NGI-DVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 4589999999999999999986 454 7999998753
No 490
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=86.21 E-value=0.76 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=29.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|+|||+|.-|.+.|..|++.+ .+|+++ +.
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~ 50 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-AR 50 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-Ec
Confidence 46789999999999999999999999 899998 54
No 491
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=86.21 E-value=0.49 Score=47.18 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++|+|||+|++|+-+|..|++ .|. +|+|+.++.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~--------------------~G~-~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQ--------------------HDV-DVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHH--------------------TTC-EEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHH--------------------CCC-eEEEEcCCC
Confidence 689999999999999999986 454 799999876
No 492
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=86.15 E-value=0.69 Score=43.94 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|++.+ + +|+++|+++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G--~~~V~~~dr~~ 58 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAG--AIDMAAYDAAS 58 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHS--CCEEEEECSSC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC--CCeEEEEcCCC
Confidence 4579999999999999999999999 8 999999864
No 493
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=86.15 E-value=0.87 Score=43.60 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+|..|.++|..|+..+--.++.|+|..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 447999999999999999999887622378888863
No 494
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=86.12 E-value=0.97 Score=44.17 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|.-|..++..+.+.| ++|+++|..+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~ 46 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSED 46 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 45689999999999999999999999 99999998754
No 495
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=86.08 E-value=0.88 Score=42.32 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
..++++|+|+|-+|-.++..|.+.+ . +|++++|.
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G--~~~v~i~~R~ 153 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAG--PSELVIANRD 153 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTC--CSEEEEECSC
T ss_pred cCCEEEEECccHHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 5689999999999999999999998 7 89999875
No 496
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=86.05 E-value=0.9 Score=43.15 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-+++..|++.+ . +|+|+.|.
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G--~~~v~v~nRt 181 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEG--IKEIKLFNRK 181 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECS
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 35689999999999999999999998 7 89999886
No 497
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=85.94 E-value=0.57 Score=43.72 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++++|||+|-+|-.+|..|.+.| . +|++++|.+
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~ 151 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIV--RPTLTVANRTM 151 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTC--CSCCEEECSCG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCH
Confidence 4689999999999999999999998 8 899999875
No 498
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=85.87 E-value=0.65 Score=46.74 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=28.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc-EEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR-KVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~-~V~li~r~~ 213 (483)
++|+|||+|.+|+-+|..|++ .+.. +|+|+.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~--------------------~G~~~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSR--------------------APCPPKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHT--------------------SSSCCEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHh--------------------CCCCCcEEEEeCCC
Confidence 589999999999999999986 3432 799998764
No 499
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=85.85 E-value=0.91 Score=42.44 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=31.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-.++..|.+.+ . +|+|++|.
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~ 159 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQ--PASITVTNRT 159 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTC--CSEEEEEESS
T ss_pred ccCCEEEEECchHHHHHHHHHHHhcC--CCeEEEEECC
Confidence 35689999999999999999999988 7 89999875
No 500
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=85.76 E-value=0.88 Score=43.65 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|-.|-.+|..|++.| + +++|+|...
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aG--Vg~ItlvD~D~ 68 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWG--VRKITFVDNGT 68 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCB
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCE
Confidence 4689999999999999999999998 6 899999874
Done!