RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011536
(483 letters)
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 292 bits (750), Expect = 2e-94
Identities = 157/445 (35%), Positives = 242/445 (54%), Gaps = 46/445 (10%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
++ +E+ RR+ LL + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 1 MTQQEFQRRRQALLAKMQPGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVL 60
Query: 112 VLSHECGLCMFMPETSAHDV-----------IWKGQIAGVDAAPETFKADKAYPMSKIQE 160
VL +T H V IW G+ G DAAPE D+A P S+I +
Sbjct: 61 VLIKS-------DDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQ 113
Query: 161 ILPDMIGRSSKLFHNQ-ETAVQ---TYTNLEAFQKADFYGAVRNLS---RLT------HE 207
L ++ ++H Q E A ++ LE +K G+ +NL+ LT HE
Sbjct: 114 QLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRK----GSRQNLTAPATLTDWRPWVHE 169
Query: 208 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHP--YEGLLAAKFEYECKMRGAQRMAF 265
+R KSP E+ ++R + I A + M K P +E L + +E GA+ ++
Sbjct: 170 MRLFKSPEEIAVLRRAGEISALAHTRAM--EKCRPGMFEYQLEGEIHHEFNRHGARYPSY 227
Query: 266 NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 325
N +VG G N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +
Sbjct: 228 NTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREI 287
Query: 326 YDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNP 380
YD++L++ + L L PGTS+ ++ V ++ GL ++GI+ D + +
Sbjct: 288 YDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFM 347
Query: 381 TSIGHYLGMDVHDSSV--VTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEV 438
+ H+LG+DVHD V R LEPG+V+T+EPG+YI PE++RGIGIRIED++
Sbjct: 348 HGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDI 407
Query: 439 LITETGYEVLTGSLPKEIKHIESLL 463
+ITETG E LT S+ K+ IE+L+
Sbjct: 408 VITETGNENLTASVVKKPDEIEALM 432
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 282 bits (724), Expect = 3e-93
Identities = 111/244 (45%), Positives = 146/244 (59%), Gaps = 11/244 (4%)
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 276
++LMR++ I +A M S+ E L A+FEYE + RGA R+A++ +V G NAA
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGA-RLAYSYIVAAGSNAA 59
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
++HY NDQ + DGDLVL+D G E GY SD+TRT+P G F+ + LY+ +L K
Sbjct: 60 ILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAA 119
Query: 337 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDP-----YNELNPTSIGHYLGMDV 391
+ C PG S IH + +L +GLKE+GI+ D + Y + P +GHYLG+DV
Sbjct: 120 IAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDV 179
Query: 392 HDSSVVTYE----RPLEPGVVITIEPGIYIPLSF-SGPERFRGIGIRIEDEVLITETGYE 446
HD RPLEPG+VITIEPGIY PE FRG GIRIED+VL+TE G E
Sbjct: 180 HDVGGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTEDGPE 239
Query: 447 VLTG 450
LT
Sbjct: 240 NLTR 243
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 211 bits (539), Expect = 8e-64
Identities = 113/398 (28%), Positives = 183/398 (45%), Gaps = 37/398 (9%)
Query: 70 ENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGG---VAVLSHECG-LCMFMPE 125
E + + +N+ Y+TG G A+L G +F+
Sbjct: 9 EYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRG 68
Query: 126 TSAHDVIWKGQIAGVDAAPETFKADKAY--PMSKIQEILPDMIGRSSKLFHNQETAVQTY 183
I + E ++ D+ P+ + +L ++ ++ + T
Sbjct: 69 RDEEAAKETSWIKLEN--VEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTL 126
Query: 184 TNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPY 243
E Q A + + S L LR +KSPAE+ +R++A I AL + +
Sbjct: 127 AAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMT 186
Query: 244 EGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 303
E +AA+ EY + GA+ +F+ +V G NAA+ HY+ +D+K+ DGDLVL+D+G +G
Sbjct: 187 EAEIAAELEYALRKGGAEGPSFDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNG 246
Query: 304 YVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKE 363
Y SD+TRT+ P G S + +Y+ +L+ + + PG + ++ R+ L++
Sbjct: 247 YCSDITRTF-PIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVD----AAARQVLEK 301
Query: 364 IGIVNSDGTDPYNELNPTSIGHYLG--MDVHD---SSVVTYERPLEPGVVITIEPGIYIP 418
G Y GH +G +DVH+ + LEPG+V +IEPGIYIP
Sbjct: 302 AG---------YGLYFLHGTGHGVGFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGIYIP 352
Query: 419 LSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEI 456
G G+RIED VL+TE G+EVLT +PKE+
Sbjct: 353 ---------GGGGVRIEDTVLVTEDGFEVLT-RVPKEL 380
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 177 bits (450), Expect = 7e-53
Identities = 86/230 (37%), Positives = 119/230 (51%), Gaps = 27/230 (11%)
Query: 218 KLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYEC-KMRGAQRMAFNPVVGGGPNAA 276
+LMR++A I AL + + E LAA+ E GA+ AF P+V GPNAA
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
V HY +D+ + DGDLVL+DVG E GY SD+TRT+ G + + LY+ +L+ +
Sbjct: 61 VPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTF-VVGKPTPEQRELYEAVLEAQEAA 119
Query: 337 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHD--- 393
+ PG + + + +L +G Y E P +GH +G+DVHD
Sbjct: 120 IAAVKPGVTGGDVDAAAREVLEEG-------------GYGEYFPHGLGHGIGLDVHDEGP 166
Query: 394 -SSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITE 442
S +R LEPG+V TIEPGIY P G+RIED VL+TE
Sbjct: 167 YISRGGNDRVLEPGMVFTIEPGIYFI-----PGWG---GVRIEDTVLVTE 208
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 157 bits (399), Expect = 2e-45
Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 33/235 (14%)
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGG 272
++L+R++A I +A G+ +AA+ EY + GA+ +F+ +V G
Sbjct: 1 IELLRKAARIADKA----FEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDTIVASG 56
Query: 273 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
PN+A+ H +D+KI++GDLVL+D G GY SD+TRT G S + +Y+++L+
Sbjct: 57 PNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTV-AVGEPSDELKEIYEIVLEA 115
Query: 333 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVH 392
+ ++ PG + ++ R ++E G Y E GH +G++VH
Sbjct: 116 QQAAIKAVKPGVTAKEVDK----AARDVIEEAG---------YGEYFIHRTGHGVGLEVH 162
Query: 393 D--SSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 445
+ + LE G+V TIEPGIYI P + G+RIED+VL+TE G
Sbjct: 163 EAPYISPGSDDVLEEGMVFTIEPGIYI------PGKG---GVRIEDDVLVTEDGC 208
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This domain
is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 148 bits (376), Expect = 5e-43
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
I A+E+ RR RLL +LP NS AIL APEK YP+RQD+++ Y+TG +P V
Sbjct: 1 IPAKEFAERRARLLALLPPNSAAILPGAPEKYRNRDTEYPFRQDSDFYYLTGFNEPDAVL 60
Query: 112 VLSHECG--LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRS 169
VL +F+P IW G+ G + A E F D+AYP+ ++ EILP+++ +
Sbjct: 61 VLKDGDTGKSTLFVPPKDPEYEIWDGRRPGPEEAKEKFGVDEAYPIDELDEILPELLEGA 120
Query: 170 SKLFHNQET 178
+++ T
Sbjct: 121 ETVYYALGT 129
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 132 bits (334), Expect = 5e-37
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
I A EY +RR+RL L SVA+L A PEK+ ++ YP+RQD+++ Y+TG +P V
Sbjct: 1 IPAAEYAARRRRLAAKLFPGSVAVLPAGPEKVRSNDTDYPFRQDSDFYYLTGFDEPDAVL 60
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL + +F+P D +W G G++ A E F D+ YP+ ++ +LP ++
Sbjct: 61 VLDPSGGGGK--STLFVPPRDPEDELWDGPRLGLEEAKEKFGVDEVYPIDELDAVLPGLL 118
Query: 167 GRSSKLFHNQET 178
+ +++
Sbjct: 119 AGAGTVYYLLGR 130
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 120 bits (302), Expect = 1e-31
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 26/231 (11%)
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 276
+ +R++A I A+ + E +AA E + G A +VG G A
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGY-PAGPTIVGSGARTA 59
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
+ HY +D+++ +GDLVL+D+G GY +D+TRT+ G S + LY+ + + +
Sbjct: 60 LPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTF-VIGEPSDEQRELYEAVREAQEAA 118
Query: 337 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSV 396
L PG + ++ R+ L+E G GH +G+++H+ V
Sbjct: 119 LAALRPGVTAEEVDA----AAREVLEEHG---------LGPNFGHRTGHGIGLEIHEPPV 165
Query: 397 VTYE--RPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 445
+ LEPG+V +EPG+Y+P G G+RIED VL+TE G
Sbjct: 166 LKAGDDTVLEPGMVFAVEPGLYLPG---------GGGVRIEDTVLVTEDGP 207
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 109 bits (274), Expect = 2e-26
Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 29/255 (11%)
Query: 208 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNP 267
LR +K+P E++ +R + I + ++ E +AA+ E+ + +GA++ +F+
Sbjct: 124 LRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDT 183
Query: 268 VVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE---- 323
+V G A+ H +D+ + G+ V +D G GY SDMTRT G S E
Sbjct: 184 IVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLF 243
Query: 324 ALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSI 383
+Y ++LQ + PG Q+ + R+ + E G Y + +
Sbjct: 244 NVYQIVLQAQLAAISAIRPGVRCQQVDDAA----RRVITEAG---------YGDYFGHNT 290
Query: 384 GHYLGMDVHDSSVV--TYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLIT 441
GH +G++VH+ L+PG+++T+EPGIY+P +G G+RIED VL+T
Sbjct: 291 GHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPG--------QG-GVRIEDVVLVT 341
Query: 442 ETGYEVLTGSLPKEI 456
G EVL ++PK +
Sbjct: 342 PQGAEVLY-AMPKTV 355
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 104 bits (262), Expect = 3e-24
Identities = 87/302 (28%), Positives = 125/302 (41%), Gaps = 78/302 (25%)
Query: 206 HELRWVKSPAELKLMRES---ASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR---- 258
H R K+ EL MRE+ A G +A E A E++ +
Sbjct: 156 HYHRAYKTDYELACMREAQKIAVAGHRA-----------AKEAFRAGMSEFDINLAYLTA 204
Query: 259 ---GAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDL-VLMDVGCELHGYVSDMTRTWPP 314
+ + +V +AAV+HY++ D + L+D G E +GY +D+TRT+
Sbjct: 205 TGQRDNDVPYGNIVALNEHAAVLHYTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTY-- 262
Query: 315 CGSFSSLEEALY-DLILQTNKECLELC---MPGTSLLQIH---HYSV-GMLRK-----GL 361
++ E+ + LI NKE L L PG S + +H H + +LRK GL
Sbjct: 263 ----AAKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGL 318
Query: 362 KEIGIVNSDGTDPYNELNPTSIGHYLGMDVHD---------------SSVVTY---ERPL 403
E +V T P+ P +GH LG+ VHD Y R L
Sbjct: 319 SEEAMVEQGITSPFF---PHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVL 375
Query: 404 EPGVVITIEPGIYIPLSFSGP----ERFRGI------------GIRIEDEVLITETGYEV 447
EPG+V+TIEPG+Y S P + GIRIED V++ E G E
Sbjct: 376 EPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVEN 435
Query: 448 LT 449
+T
Sbjct: 436 MT 437
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 74.5 bits (184), Expect = 3e-15
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 42/212 (19%)
Query: 247 LAAKFEYECKMRGAQRM----AFNPVVGGGPNAAVIHYSRNDQ---KIDDGDLVLMDVGC 299
A K E R Q+ +F+ + G GPN A++HYS ++ KI L L+D G
Sbjct: 35 AADKLEE---FRRQQKGYVGLSFDTISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGG 91
Query: 300 ELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMP-GT--SLLQIHHYSVGM 356
+ +D+TRT G ++ ++ Y L+L+ + P GT S L +
Sbjct: 92 QYLDGTTDITRTVH-LGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDA------L 144
Query: 357 LRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYER----PLEPGVVITIE 412
R+ L + G+ GT +G +L VH+ PL+ G++++ E
Sbjct: 145 ARQPLWKAGLDYGHGTG-------HGVGSFLN--VHEGPQSISPAPNNVPLKAGMILSNE 195
Query: 413 PGIYIPLSFSGPERFRGIGIRIEDEVLITETG 444
PG Y + GIRIE+ VL+ E
Sbjct: 196 PGYYKEGKY---------GIRIENLVLVVEAE 218
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 59.3 bits (144), Expect = 6e-10
Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 50/226 (22%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG 270
+KSP E++ +R++ + + L + G+ + + K + A +G
Sbjct: 3 LKSPDEIEKIRKAGRLAAEVLE----ELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLG 58
Query: 271 --GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
G P N VIH + + + DGD+V +DVG GY D +T+ G S
Sbjct: 59 YYGFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTF-LVGKISPE 117
Query: 322 EEALYDLILQTNKECL----ELCMPGTSLLQ----IHHYSVGMLRKGLKEIGIVNSDGTD 373
E L L+ +E L E PG + + I Y + G
Sbjct: 118 AEKL----LECTEESLYKAIEEAKPGNRIGEIGAAIQKY--------------AEAKGFS 159
Query: 374 PYNELNPTSIGHYLGMDVHDS-SVVTYERP-----LEPGVVITIEP 413
E GH +G H+ + Y + L+ G+V TIEP
Sbjct: 160 VVREY----CGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEP 201
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 58.8 bits (143), Expect = 1e-09
Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 274 NAAVIHYSRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
N V H D+K + +GD+V +DVG + GY+ D T+ + + +L+
Sbjct: 73 NEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFV----VGEVSDEDAKRLLEA 128
Query: 333 NKECLELCM----PGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSIGHYL 387
KE L + PG L I I S G L GH +
Sbjct: 129 TKEALYAGIEAVKPGARLGDIGR-----------AIQEYAESRGFSVVRNL----TGHGI 173
Query: 388 GMDVHDSSVV------TYERPLEPGVVITIEP------GIYIPLSFSG---PERFRGIGI 432
G ++H+ + L+ G+V IEP G + + +
Sbjct: 174 GRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSA 233
Query: 433 RIEDEVLITETGYEVLT 449
+ E V++TE G E+LT
Sbjct: 234 QFEHTVIVTEDGCEILT 250
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 59.3 bits (143), Expect = 2e-09
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 36/254 (14%)
Query: 204 LTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM 263
L +E+R +KSP E++ +R+SA I + + L A F+
Sbjct: 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 264 A-FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLE 322
+ FN + G + I K+ GDL+ D G ++ GY +D+ RT+ G L
Sbjct: 230 SRFNLISVGDNFSPKIIADTTPAKV--GDLIKFDCGIDVAGYGADLARTF-VLGEPDKLT 286
Query: 323 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTS 382
+ +YD I ++ L + PG L + ++ +++ G YN
Sbjct: 287 QQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTS----------GLPHYNR---GH 333
Query: 383 IGH----YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIG---IRIE 435
+GH +LG++ PG+V+++E Y GIG I +E
Sbjct: 334 LGHGDGVFLGLEEVPFVSTQATETFCPGMVLSLETPYY------------GIGVGSIMLE 381
Query: 436 DEVLITETGYEVLT 449
D +LIT++G+E L+
Sbjct: 382 DMILITDSGFEFLS 395
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 57.1 bits (139), Expect = 2e-09
Identities = 61/209 (29%), Positives = 83/209 (39%), Gaps = 67/209 (32%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H +D+ + DGD+V +DVG EL GY D RT+ G S EEA +++
Sbjct: 63 NEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTF-IVGEVS--EEAKK--LVEVT 117
Query: 334 KECLEL----CMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELN 379
+E L PG + I + YSV ++E G
Sbjct: 118 EEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSV------VREFG-------------- 157
Query: 380 PTSIGHYLGMDVH-DSSVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFR----G 429
GH +G H + + Y RP L+PG+V TIEP I G G
Sbjct: 158 ----GHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMI-----NLGTYEVVTLPDG 208
Query: 430 IGIRIEDE---------VLITETGYEVLT 449
+ +D VLITE G E+LT
Sbjct: 209 WTVVTKDGSLSAQFEHTVLITEDGPEILT 237
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 56.7 bits (138), Expect = 4e-09
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 65/210 (30%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H +D+ + +GD+V +DV GY D +RT+ G S ++ L +
Sbjct: 73 NEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTF-GVGEISPEDKRL----CEVT 127
Query: 334 KECLEL----CMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELN 379
KE L L PG L I +SV ++E
Sbjct: 128 KEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSV------VREYC-------------- 167
Query: 380 PTSIGHYLGMDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPE-------- 425
GH +G H+ + Y P L+ G+V TIEP I + E
Sbjct: 168 ----GHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMI----NAGKREVKTLKDGW 219
Query: 426 ----RFRGIGIRIEDEVLITETGYEVLTGS 451
+ + + E V +TE G E+LT
Sbjct: 220 TVVTKDGSLSAQYEHTVAVTEDGPEILTLR 249
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 52.1 bits (125), Expect = 2e-07
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N + H ND + +GD++ +DV C + GY D +R G S +++ + Q +
Sbjct: 113 NEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRM-VMIGEVSEIKK----KVCQAS 167
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKG--LKEIGIVNSDGTDPYN-ELNPTSIGHYLGMD 390
ECL + ++ +L+ G L EIG V + D Y + +GH +G+
Sbjct: 168 LECL-------------NAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIK 214
Query: 391 VHDSSVVTYER-----PLEPGVVITIEP--------GIYIPLSFSGPERFRG-IGIRIED 436
H++ V + R PL PG++ TIEP G+ P++ + E
Sbjct: 215 FHENPYVPHHRNSSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEH 274
Query: 437 EVLITETGYEVLT 449
+LITETGYE+LT
Sbjct: 275 TILITETGYEILT 287
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 49.7 bits (118), Expect = 2e-06
Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 202 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 261
S + +ELR +KSP E+K +R+SA I + + + L A ++ +
Sbjct: 169 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET 228
Query: 262 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
+ ++ G + + N K GDL+ D G ++ GY +D+ RT+ G +
Sbjct: 229 HFSRFHLISVGADFSPKLIPSN-TKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEI 286
Query: 322 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPT 381
+Y I ++ L + PG + + ++ +++K G YN
Sbjct: 287 TRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK----------SGLPNYNR---G 333
Query: 382 SIGH----YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE 437
+GH +LG++ G+V+++E Y + I IED
Sbjct: 334 HLGHGNGVFLGLEESPFVSTHATESFTSGMVLSLETPYY---------GYNLGSIMIEDM 384
Query: 438 VLITETGYEVLTGSLPKEI 456
+LI + G E L+ LP+++
Sbjct: 385 ILINKEGIEFLS-KLPRDL 402
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 49.3 bits (117), Expect = 2e-06
Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 202 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 261
S + +ELR +KSP E+K +R+SA I + + + L A ++ +
Sbjct: 86 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET 145
Query: 262 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
+ ++ G + + N K GDL+ D G ++ GY +D+ RT+ G +
Sbjct: 146 HFSRFHLISVGADFSPKLIPSN-TKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEI 203
Query: 322 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPT 381
+Y I ++ L + PG + + ++ +++K G YN
Sbjct: 204 TRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK----------SGLPNYNR---G 250
Query: 382 SIGH----YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE 437
+GH +LG++ G+V+++E Y + I IED
Sbjct: 251 HLGHGNGVFLGLEESPFVSTHATESFTSGMVLSLETPYY---------GYNLGSIMIEDM 301
Query: 438 VLITETGYEVLTGSLPKEI 456
+LI + G E L+ LP+++
Sbjct: 302 ILINKEGIEFLS-KLPRDL 319
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 41.4 bits (98), Expect = 5e-04
Identities = 62/291 (21%), Positives = 98/291 (33%), Gaps = 97/291 (33%)
Query: 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKF-----EYECKMRGAQRMA 264
+KSP EL+ MR+ I L+ M P G+ + + + GA +
Sbjct: 9 EIKSPRELEKMRKIGRI-VATALKEMG-KAVEP--GMTTKELDRIAEKRLEEH-GA-IPS 62
Query: 265 F---------------NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMT 309
V G P VI DGDLV +DV L GY D
Sbjct: 63 PEGYYGFPGSTCISVNEEVAHGIPGPRVIK---------DGDLVNIDVSAYLDGYHGDT- 112
Query: 310 RTWPPCGSFS--SLEEALYDLILQTNKECLELCM----PGTSLLQI----HHYSVGMLRK 359
+F+ + E L + +E L + G L I +
Sbjct: 113 -----GITFAVGPVSEEAEKLC-RVAEEALWAGIKQVKAGRPLNDIGRAIEDF------- 159
Query: 360 GLKEIGIVNSDGTDPYNEL-NPTSIGHYLGMDVHD--SSVVTYERP-----LEPGVVITI 411
+G Y+ + + T GH +G +H+ S ++TY P L PG+ + +
Sbjct: 160 -------AKKNG---YSVVRDLT--GHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAV 207
Query: 412 EPGIYIPLSFSGPERFRGIGIR-------------IEDEVLITETGYEVLT 449
EP + + G + + E V++T G E+LT
Sbjct: 208 EPFLNL-----GAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDGPEILT 253
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 39.5 bits (92), Expect = 0.003
Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 44/262 (16%)
Query: 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRM- 263
R VKSP E+ MR +A I + + + P G+ L A+ Y+ +RGA
Sbjct: 156 RAVKSPTEIAYMRIAARI--VENMHQRIFERIEP--GMRKCDLVAEI-YDAGIRGADGFG 210
Query: 264 ----AFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRT---WPPCG 316
A P++ G +A+ H + +D + G+ ++ Y ++RT P
Sbjct: 211 GDYPAIVPLLPSGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQ 270
Query: 317 SFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTD-PY 375
+F E+A +L+ + L PG + I + K LK+ GI T P
Sbjct: 271 AFLDAEKA----VLEGMEAGLAAAKPGNTCEDI---ANAFF-KVLKKYGIHKDSRTGYPI 322
Query: 376 NELNPTSIGH-YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRI 434
P G + + D++V L+PG+ G+++ G+ I
Sbjct: 323 GLSYPPDWGERTMSLRPGDNTV------LQPGMTFHFMTGLWM----------EDWGLEI 366
Query: 435 EDEVLITETGYEVLTGSLPKEI 456
+ +LITETG E L+ ++P+++
Sbjct: 367 TESILITETGVECLS-NVPRQL 387
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 38.9 bits (91), Expect = 0.003
Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 263 MAFNPVVGGGPNAAVIHYSRNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW---PPCGS 317
+ P++ G N ++ S + K G +++ +G Y S++ RT+ P
Sbjct: 63 WCYPPIIQSGGNYDLLKSSSSSDKLLYHFG-VIICSLGARYKSYCSNIARTFLIDP---- 117
Query: 318 FSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNE 377
+S ++ Y+ +L +E L+ PG L ++ ++ ++K E
Sbjct: 118 -TSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPE-----------LEP 165
Query: 378 LNPTSIGHYLGMDVHDSSVV---TYERPLEPGVVITIEPGIY-IPLSFSGPERFRGIGIR 433
++G +G++ +SS++ +R L+ G+V + G + + + +
Sbjct: 166 NFTKNLGFGIGLEFRESSLIINAKNDRKLKKGMVFNLSIGFSNLQNPEPKDKESKTYALL 225
Query: 434 IEDEVLITETG-YEVLTG 450
+ D +L+TE VLT
Sbjct: 226 LSDTILVTEDEPAIVLTN 243
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 38.7 bits (90), Expect = 0.003
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 272 GPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQ 331
G N H ++K+ GD++ ++ + GY + + RT S +++ +
Sbjct: 62 GINTDGAHNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLF-LDEVSDAHLKIWEANVA 120
Query: 332 TNKECLELCMPGTSLLQIHHYSVGMLRK----GLKEIGIVNSDGTDPYNELNPTSIGHYL 387
++ LEL PG I M R+ + G +S G + HY
Sbjct: 121 VHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGV----------LSHYY 170
Query: 388 GMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEV 447
G + + LEPG+V+++EP I +P G G R D ++I E G E
Sbjct: 171 GREAGLELREDIDTVLEPGMVVSMEPMIMLPEGQPGAG-----GYREHDILVINENGAEN 225
Query: 448 LTG 450
+TG
Sbjct: 226 ITG 228
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 38.8 bits (90), Expect = 0.006
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 290 GDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQI 349
GD+VL+ +G +GY S+M+RT S ++ Y+ + K L L PGT I
Sbjct: 270 GDVVLLSIGIRYNGYCSNMSRTI--LTDPDSEQQKNYEFLYMLQKYILGLVRPGTDSGII 327
Query: 350 HHYSVGMLRKGLKEIG 365
+ + + E+G
Sbjct: 328 YSEAEKYISSNGPELG 343
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 36.7 bits (85), Expect = 0.023
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 49/204 (24%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N + H + +K++DGD+V +DV G D+ T+ +++EA L+ +
Sbjct: 205 NEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETF----FVGNVDEASRQLV-KCT 259
Query: 334 KECLE----LCMPGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSIGHYLG 388
ECLE + PG +E+G ++N T + + GH +G
Sbjct: 260 YECLEKAIAIVKPGVR---------------YREVGEVINRHATMSGLSVVKSYCGHGIG 304
Query: 389 MDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFR----------GIGI 432
H + ++ Y R ++ G V TIEP I +G R R G
Sbjct: 305 ELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMIN-----AGVWRDRMWPDGWTAVTADGK 359
Query: 433 R---IEDEVLITETGYEVLTGSLP 453
R E +L+TETG EVLT LP
Sbjct: 360 RSAQFEHTLLVTETGVEVLTARLP 383
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 34.4 bits (79), Expect = 0.097
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 25/148 (16%)
Query: 274 NAAVIHYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL----EEALY 326
N H++ DGD+V +D+G + GY++D T + +L ++ALY
Sbjct: 59 NECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDNLVKAAKDALY 118
Query: 327 DLILQTNKECLELCMPGTSLLQ-IHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGH 385
I + + + G ++ + I Y G+K I + PY SI +
Sbjct: 119 TAIKEIRAG-VRVGEIGKAIQEVIESY-------GVKPISNLTGHSMAPYRLHGGKSIPN 170
Query: 386 YLGMDVHDSSVVTYERPLEPGVVITIEP 413
D LE G V+ IEP
Sbjct: 171 VKERDTTK---------LEEGDVVAIEP 189
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 34.0 bits (79), Expect = 0.15
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 45/156 (28%)
Query: 275 AAVIHY--SRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL----EEALYD 327
AA HY S D++ +GD+V +D+G + GY++D T G + L EEAL
Sbjct: 59 AA--HYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYEDLVEASEEALEA 116
Query: 328 LILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIG-----IVNSDGTDPYNELNPTS 382
I E+ PG S + EIG + S G P L
Sbjct: 117 AI--------EVVRPGVS---------------VGEIGRVIEETIRSYGFKPIRNLTGHG 153
Query: 383 IGHYLGMDVHDSSVV-----TYERPLEPGVVITIEP 413
+ Y ++H + LE G V IEP
Sbjct: 154 LERY---ELHAGPSIPNYDEGGGVKLEEGDVYAIEP 186
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 273 PNAAVIHYS----RNDQKIDDGDLVLMDVGCELHGYVSDMTRT 311
N V H+S + DGD+V +D+GC + GY++ + T
Sbjct: 65 VNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHT 107
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 31.5 bits (72), Expect = 1.0
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 35/148 (23%)
Query: 279 HYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKE 335
HY+ N D + +GD+V +D G + GY++D T F YD +L+ KE
Sbjct: 60 HYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV----DFDP----KYDDLLEAAKE 111
Query: 336 CLELCM----PGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSIGHYLGMD 390
L + P L +I G + I ++ S G P L SI Y
Sbjct: 112 ALNAAIKEAGPDVRLGEI-----G------EAIEEVIESYGFKPIRNLTGHSIERY---R 157
Query: 391 VHDS-SVVTYERP----LEPGVVITIEP 413
+H S+ + LE G V IEP
Sbjct: 158 LHAGKSIPNVKGGEGTRLEEGDVYAIEP 185
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 30.6 bits (69), Expect = 1.9
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 273 PNAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRT 311
N V H+S ++DQ + +GD+V +D+GC + G+++ + T
Sbjct: 83 VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHT 125
>gnl|CDD|204331 pfam09851, SHOCT, Short C-terminal domain.
Length = 31
Score = 26.5 bits (60), Expect = 3.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 41 QLMKEGEITPGISAEEYISRRKRLLE 66
+L GEIT EE+ +++K LL
Sbjct: 10 ELYARGEIT----EEEFEAKKKELLG 31
>gnl|CDD|226044 COG3513, COG3513, Predicted CRISPR-associated nuclease, contains
McrA/HNH-nuclease and RuvC-like nuclease domain [Defense
mechanisms].
Length = 1088
Score = 30.3 bits (68), Expect = 3.2
Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 17/150 (11%)
Query: 44 KEGEITPGISAEEYIS-RRKRLLEILPENSVAILAAAPEKMMTDVVPYP-----YRQDAN 97
K G+ G A ++ RK L ILP N+ IL A E+M P P Y+Q
Sbjct: 269 KAGKNAYG--ASRFVWLTRKNNLRILPWNTEEILDTAIERMTLLDEPLPKEKLTYKQSLK 326
Query: 98 YLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSK 157
L ++ + V + FM + +I A + D +
Sbjct: 327 LLGLSDYNEFTKVRYIKENAEKTTFMEGKAYKAII--------KALFKQGLEDSFNSSNL 378
Query: 158 IQEILPDMIGRSSKLFHNQETAVQTYTNLE 187
+ L IG+ L N E V+ T E
Sbjct: 379 SYDDL-LEIGKDFSLLKNLEDIVKALTKFE 407
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family [DNA
metabolism, DNA replication, recombination, and repair].
Length = 254
Score = 29.7 bits (67), Expect = 3.5
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 59 SRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANY-LYITGCQQPGGVAVLSHE 116
+R + L L EN +L K+ + P Y ++ +G + GVA+ S E
Sbjct: 13 ARPHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQKGYSGVAIFSKE 71
>gnl|CDD|131834 TIGR02787, codY_Gpos, GTP-sensing transcriptional pleiotropic
repressor CodY. This model represents the full length
of CodY, a pleiotropic repressor in Bacillus subtilis
and other Firmicutes (low-GC Gram-positive bacteria)
that responds to intracellular levels of GTP and
branched chain amino acids. The C-terminal
helix-turn-helix DNA-binding region is modeled by
pfam08222 in Pfam [Regulatory functions, DNA
interactions].
Length = 251
Score = 29.3 bits (66), Expect = 3.7
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 245 GLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD-----VGC 299
L E P+ GGG + +R+D++ +D DLVL + VG
Sbjct: 92 ELTVFPEESRDLFPKG-LTTIVPIYGGGERLGTLILARSDKEFNDDDLVLAEYAATVVGM 150
Query: 300 EL 301
EL
Sbjct: 151 EL 152
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 28.2 bits (63), Expect = 4.0
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 172 LFHNQETAVQTYTN-LEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQA 230
L + ++ TN LEA D AV+ L + T+EL W + L E A
Sbjct: 44 LLARLQEFIKRTTNALEAL---DPTTAVQELFKFTNELNWYLDELKPALQTEELREAVLA 100
Query: 231 LLQTML 236
+L+ L
Sbjct: 101 VLRAAL 106
>gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 312
Score = 28.4 bits (64), Expect = 8.8
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 44 KEGEITPGISAEEYISRRKRLLEILPENSVA--ILAAAPEKMM 84
++G + +S EEY+ LE LP V I AP +
Sbjct: 233 EKGRLKF-LSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTL 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,787,956
Number of extensions: 2435625
Number of successful extensions: 1976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1929
Number of HSP's successfully gapped: 50
Length of query: 483
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 382
Effective length of database: 6,457,848
Effective search space: 2466897936
Effective search space used: 2466897936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)