RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011536
(483 letters)
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 154 bits (390), Expect = 2e-44
Identities = 98/258 (37%), Positives = 154/258 (59%), Gaps = 7/258 (2%)
Query: 213 SPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGG 272
SP E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 1 SPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSG 60
Query: 273 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 61 ENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLES 120
Query: 333 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYN-----ELNPTSIGHYL 387
+ L L PGTS+L++ V ++ GL ++GI+ D + + H+L
Sbjct: 121 LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWL 180
Query: 388 GMDVHDSSVV--TYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 445
G+DVHD V R LEPG+V+T+ PG+YI PE++RGIGIRIED+++ITETG
Sbjct: 181 GLDVHDVGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGN 240
Query: 446 EVLTGSLPKEIKHIESLL 463
E LT S+ K+ + IE+L+
Sbjct: 241 ENLTASVVKKPEEIEALM 258
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 128 bits (323), Expect = 8e-35
Identities = 50/266 (18%), Positives = 92/266 (34%), Gaps = 28/266 (10%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGA------QRMA 264
+K+P +++ MR + + + L + K G L
Sbjct: 3 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 62
Query: 265 FNPVVGGGPNAAVIHYSRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE 323
+ V N V H +D K + DGD+V +DV G+ D ++ + + + E
Sbjct: 63 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG-KPTIMGE 121
Query: 324 ALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSI 383
L + ++ L + PG +L +I + +G E I
Sbjct: 122 RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEA----------EGFSVVREYCGHGI 171
Query: 384 GHYLGMD--VHDSSVVTYERPLEPGVVITIEPGIYI--------PLSFSGPERFRGIGIR 433
G + V L+PG+ TIEP + ++ + R + +
Sbjct: 172 GRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQ 231
Query: 434 IEDEVLITETGYEVLTGSLPKEIKHI 459
E +++T+ G E+LT I I
Sbjct: 232 YEHTIVVTDNGCEILTLRKDDTIPAI 257
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 119 bits (298), Expect = 4e-32
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VLSH----ECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIG 167
VL +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLN 122
Query: 168 RSSKLFHN----QETAVQTYTNLEAFQKADFYGA-----VRNLSRLTHELRWVK 212
++H V + LE +K + + + HE+R K
Sbjct: 123 GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFK 176
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 118 bits (295), Expect = 3e-31
Identities = 74/245 (30%), Positives = 133/245 (54%), Gaps = 26/245 (10%)
Query: 212 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGG 271
K+ E++++ ++ I +A++ + E +AAK EY KM GA++ AF+ ++
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 272 GPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQ 331
G +A+ H +D++I+ GDLV++D+G + Y SD+TRT GS + + +Y+++L+
Sbjct: 61 GHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTI-VVGSPNEKQREIYEIVLE 119
Query: 332 TNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDV 391
K +E PG + ++ + ++++ Y + S+GH +G+++
Sbjct: 120 AQKRAVEAAKPGMTAKELDSIAREIIKEY-------------GYGDYFIHSLGHGVGLEI 166
Query: 392 HDSSVVTY--ERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLT 449
H+ ++ E L+ G+VITIEPGIYIP G+RIED VLITE G + LT
Sbjct: 167 HEWPRISQYDETVLKEGMVITIEPGIYIPKLG---------GVRIEDTVLITENGAKRLT 217
Query: 450 GSLPK 454
+ +
Sbjct: 218 KT-ER 221
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 117 bits (294), Expect = 7e-31
Identities = 42/254 (16%), Positives = 76/254 (29%), Gaps = 19/254 (7%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR------MA 264
+KS E ++R A I + E +A A M
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 265 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEA 324
G N H +K++ GD++ ++ + GY + + RT
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 325 LYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIG 384
+ + + L+ + + +
Sbjct: 122 WQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLS------- 174
Query: 385 HYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETG 444
HY G + + LEPG+V+++EP I +P G G R D +++ E G
Sbjct: 175 HYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPG-----AGGYREHDILIVNENG 229
Query: 445 YEVLTGSLPKEIKH 458
E +T P +
Sbjct: 230 AENIT-KFPYGPEK 242
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 100 bits (250), Expect = 8e-25
Identities = 41/261 (15%), Positives = 81/261 (31%), Gaps = 35/261 (13%)
Query: 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECK------MRGAQR 262
+K+P+E++ M+++ AL + + K
Sbjct: 2 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG 61
Query: 263 MAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLE 322
V ++ +GD+V +DVG G D T+ G
Sbjct: 62 GYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYI-VGETDERG 120
Query: 323 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTS 382
+ L + + ++ +++ PG L + H + +
Sbjct: 121 KELVRVTREVLEKAIKMIKPGIRLGDVSH--------------CIQETVESVGFNVIRDY 166
Query: 383 IGHYLGMDVHDSSVVTY------ERPLEPGVVITIEPGIYIPLS--------FSGPERFR 428
+GH +G ++H+ + L G+ + IEP + ++
Sbjct: 167 VGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDG 226
Query: 429 GIGIRIEDEVLITETGYEVLT 449
E +LITE G E+LT
Sbjct: 227 SRCAHFEHTILITENGAEILT 247
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 95.5 bits (236), Expect = 3e-23
Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 18/234 (7%)
Query: 216 ELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA 275
+ + + ++ I + + + ++ LA E G + + A
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA 61
Query: 276 AVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKE 335
Y + + +GD + +DVG + G+++D T + L + +
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE----DELMEAAKEALNA 117
Query: 336 CLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSS 395
+ + G + ++ +RK + + S + + G+ + +
Sbjct: 118 AISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYK-------LHAGISIPNIY 170
Query: 396 VVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLT 449
L+ G V IEP I GI + E +++ + V T
Sbjct: 171 RPHDNYVLKEGDVFAIEPFATIG-------ARNGIVAQFEHTIIVEKDSVIVTT 217
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 96.0 bits (237), Expect = 4e-23
Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 20/252 (7%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG 270
VK+ EL+ ++E I + +K L + + GA +
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 271 GG-----PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 325
G N V H + + I +GDLV +DV +GY +D ++ S +++ +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 326 YDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGH 385
D+ + + PGT L I R+ ++ + + +
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 386 YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSG--------PERFRGIGIRIEDE 437
L G+V+ IEP I SF + +IE
Sbjct: 183 NYFDPKDK-------TLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHT 235
Query: 438 VLITETGYEVLT 449
V++T+ G + T
Sbjct: 236 VIVTKDGPILTT 247
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 87.7 bits (216), Expect = 6e-20
Identities = 45/261 (17%), Positives = 75/261 (28%), Gaps = 18/261 (6%)
Query: 200 NLSRLTHE---LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECK 256
R T E S RE+A Q M K + K E +
Sbjct: 37 AAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR 96
Query: 257 MRGAQRMAFNPV---VGGGPNAAVIHY---SRNDQKIDDGDLVLMDVGCELHGYVSDMTR 310
+ + G N HY + + + D+ +D G + G + D
Sbjct: 97 KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAF 156
Query: 311 TWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
T + +L +A+ D C L ++ + + + +
Sbjct: 157 TVTFNPKYDTLLKAVKD-----ATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTY 211
Query: 371 GTDPYNELNPTSIGHYLGMDVHDSSVVT--YERPLEPGVVITIEPGIYIPLSFSGPERFR 428
P LN SIG Y +V +E G V IE +
Sbjct: 212 QVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTG--KGVVDIKG 269
Query: 429 GIGIRIEDEVLITETGYEVLT 449
+ E +L+ T EV++
Sbjct: 270 SYTAQFEHTILLRPTCKEVVS 290
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex
subunit 3 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 57
Score = 30.1 bits (68), Expect = 0.067
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 18 NGRRAYSTKKFVDSGQPTPASHP 40
+G+R Y+ KK +SG+ T ++HP
Sbjct: 9 DGKRIYTLKKVTESGEITKSAHP 31
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 27.0 bits (59), Expect = 5.1
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 329 ILQTNKECLELCMPG--TSLLQIHHYSVGMLRKGLKE-----IGIVNSDGTDPYNELNPT 381
I+Q N + ++ + + S+G++ + L + I V + + Y +
Sbjct: 159 IVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSEL 218
Query: 382 SIGHYLGMDVHDSS 395
G +G+ DSS
Sbjct: 219 IPGTTVGVLSMDSS 232
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 194
Score = 26.5 bits (58), Expect = 5.2
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 58 ISRRKR-------LLEILPENSVAILAAAPEKMMTDVVPYP------YRQDANYLYITG 103
+SRR + + E+L ++A +A + P+ YR + L
Sbjct: 13 VSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHT 71
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 268
Score = 26.6 bits (57), Expect = 6.1
Identities = 5/62 (8%), Positives = 24/62 (38%)
Query: 50 PGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGG 109
P +S ++ + ++ I+ +V ++++ + + + + D ++
Sbjct: 9 PKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASA 68
Query: 110 VA 111
+
Sbjct: 69 IV 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,812,071
Number of extensions: 86562
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 16
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)