BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011537
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 130/303 (42%), Gaps = 60/303 (19%)
Query: 10 IEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSK 69
+E+ + ++S EFVE+Y +PVVL + W A + W E + K +
Sbjct: 46 VERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLK----------RKYR 95
Query: 70 VQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKE 129
Q CG E D V+M + +++ ME++ D S LY+ D + E
Sbjct: 96 NQKFKCG--EDNDGYSVKMKMKYYIE------YMESTR-------DDSPLYIFDSSYG-E 139
Query: 130 YPEYVA----YRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSW 185
+P+ Y+ P F DD +Q + YR+ MG S
Sbjct: 140 HPKRRKLLEDYKVPKFFTDD----------------LFQYAGEKRRPPYRWFVMGPPRSG 183
Query: 186 TPLHADVFRSYSWSANVCGKKKW-LFLSPSQCHLV-FDRNLKG-------CVYNIFDDVS 236
T +H D + +W+A V G K+W LF + + L+ R+ G +N+ +
Sbjct: 184 TGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRT 243
Query: 237 E--TDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDL 294
+ T P FK LE Q+ E +FVP GW+H V NL+ TI+I N+ + N VW
Sbjct: 244 QLPTWPPEFKP---LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHK 300
Query: 295 LLR 297
+R
Sbjct: 301 TVR 303
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 123/303 (40%), Gaps = 60/303 (19%)
Query: 10 IEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSK 69
+E+ + ++S EFVE+Y +PVVL + W A + W E + K +
Sbjct: 47 VERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLK----------RKYR 96
Query: 70 VQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKE 129
Q CG E D V+ +++ D S LY+ D + E
Sbjct: 97 NQKFKCG--EDNDGYSVKXKXKYYIE-------------YXESTRDDSPLYIFDSSYG-E 140
Query: 130 YPEYVA----YRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSW 185
+P+ Y+ P F DD +Q + YR+ G S
Sbjct: 141 HPKRRKLLEDYKVPKFFTDD----------------LFQYAGEKRRPPYRWFVXGPPRSG 184
Query: 186 TPLHADVFRSYSWSANVCGKKKW-LFLSPSQCHLV-FDRNLKG-------CVYNIFDDVS 236
T +H D + +W+A V G K+W LF + + L+ R+ G +N+ +
Sbjct: 185 TGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRT 244
Query: 237 E--TDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDL 294
+ T P FK LE Q+ E +FVP GW+H V NL+ TI+I N+ + N VW
Sbjct: 245 QLPTWPPEFKP---LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHK 301
Query: 295 LLR 297
+R
Sbjct: 302 TVR 304
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 49/269 (18%)
Query: 19 SYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIR 78
S F E+++ +PV+L G+ D W + W E + + + G R
Sbjct: 14 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLE--------YIQEIAGCRTVPVEVGSR 65
Query: 79 EFTDQK--RVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAY 136
+TD++ + M+V+EF+ ++ NE D V YL + PE
Sbjct: 66 -YTDEEWSQTLMTVNEFISKYI-----------VNEPRD--VGYLAQHQLFDQIPELKQD 111
Query: 137 RTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSY 196
I D+ ++ ++ +I + + G +G+ +PLH D +++
Sbjct: 112 ----ISIPDYCSL------------GDGEEEEITIN----AWFGPQGTISPLHQDPQQNF 151
Query: 197 SWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETD---FPGFKKTLWLECTQ 253
V G+K SP + ++ + DV D FP F K +L C
Sbjct: 152 L--VQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCIL 209
Query: 254 EQNEIIFVPSGWYHQVHNLEDTISINHNW 282
EI+F+P ++H V L+ + S++ W
Sbjct: 210 SPGEILFIPVKYWHYVRALDLSFSVSFWW 238
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 49/269 (18%)
Query: 19 SYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIR 78
S F E+++ +PV+L G+ D W + W E + + + G R
Sbjct: 23 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLE--------YIQEIAGCRTVPVEVGSR 74
Query: 79 EFTDQK--RVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAY 136
+TD++ + M+V+EF+ ++ NE D V YL + PE
Sbjct: 75 -YTDEEWSQTLMTVNEFISKYI-----------VNEPRD--VGYLAQHQLFDQIPELKQD 120
Query: 137 RTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSY 196
I D+ ++ ++ +I + + G +G+ +PLH D +++
Sbjct: 121 ----ISIPDYCSL------------GDGEEEEITIN----AWFGPQGTISPLHQDPQQNF 160
Query: 197 SWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETD---FPGFKKTLWLECTQ 253
V G+K SP + ++ + DV D FP F K +L C
Sbjct: 161 L--VQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCIL 218
Query: 254 EQNEIIFVPSGWYHQVHNLEDTISINHNW 282
EI+F+P ++H V L+ + S++ W
Sbjct: 219 SPGEILFIPVKYWHYVRALDLSFSVSFWW 247
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 49/269 (18%)
Query: 19 SYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIR 78
S F E+++ +PV+L G+ D W + W E + + + G R
Sbjct: 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLE--------YIQEIAGCRTVPVEVGSR 61
Query: 79 EFTDQK--RVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAY 136
+TD++ + M+V+EF+ ++ NE D V YL + PE
Sbjct: 62 -YTDEEWSQTLMTVNEFISKYI-----------VNEPRD--VGYLAQHQLFDQIPELKQD 107
Query: 137 RTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSY 196
I D+ ++ ++ +I + + G +G+ +PLH D +++
Sbjct: 108 ----ISIPDYCSL------------GDGEEEEITIN----AWFGPQGTISPLHQDPQQNF 147
Query: 197 SWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETD---FPGFKKTLWLECTQ 253
V G+K SP + ++ + DV D FP F K +L C
Sbjct: 148 L--VQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCIL 205
Query: 254 EQNEIIFVPSGWYHQVHNLEDTISINHNW 282
EI+F+P ++H V L+ + S++ W
Sbjct: 206 SPGEILFIPVKYWHYVRALDLSFSVSFWW 234
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 49/269 (18%)
Query: 19 SYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIR 78
S F E+++ +PV+L G+ D W + W E + + + G R
Sbjct: 10 SLQHFREQFLVPGRPVILKGVADHWPCXQKWSLE--------YIQEIAGCRTVPVEVGSR 61
Query: 79 EFTDQK--RVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAY 136
+TD++ + +V+EF+ ++ NE D V YL + PE
Sbjct: 62 -YTDEEWSQTLXTVNEFISKYI-----------VNEPRD--VGYLAQHQLFDQIPELKQD 107
Query: 137 RTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSY 196
I D+ ++ ++ +I + + G +G+ +PLH D +++
Sbjct: 108 ----ISIPDYCSL------------GDGEEEEITIN----AWFGPQGTISPLHQDPQQNF 147
Query: 197 SWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETD---FPGFKKTLWLECTQ 253
V G+K SP + ++ + DV D FP F K +L C
Sbjct: 148 L--VQVXGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCIL 205
Query: 254 EQNEIIFVPSGWYHQVHNLEDTISINHNW 282
EI+F+P ++H V L+ + S++ W
Sbjct: 206 SPGEILFIPVKYWHYVRALDLSFSVSFWW 234
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 201 NVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIF 260
V GKK+ + SP ++ + K V NI D+ +P F K EC+ E +++F
Sbjct: 193 QVTGKKRVVLFSPRDAQYLYLKGTKSEVLNI-DNPDLAKYPLFSKARRYECSLEAGDVLF 251
Query: 261 VPSGWYHQVHNLEDTISINHNW 282
+P+ W+H V + E + +N W
Sbjct: 252 IPALWFHNVISEEFGVGVNIFW 273
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 161 ESYQKDNDICCSDY--RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHL 218
E+Y D+ + + ++ MG + S+T H D + W + G+K + + P+ +L
Sbjct: 161 ENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENL 220
Query: 219 VFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISI 278
+ V SE F G K +C +Q +FVP+GW H V +D ++
Sbjct: 221 ARYESWSSSVTQ-----SEVFF-GDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAF 274
Query: 279 NHNWFNGYNLS 289
N+ + N+
Sbjct: 275 GGNFLHNLNIG 285
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 161 ESYQKDNDICCSDY--RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHL 218
E+Y D+ + + ++ MG + S+T H D + W + G+K + + P+ +L
Sbjct: 252 ENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENL 311
Query: 219 VFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISI 278
+ V SE F G K +C +Q +FVP+GW H V +D ++
Sbjct: 312 ARYESWSSSVTQ-----SEVFF-GDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAF 365
Query: 279 NHNWFNGYNLS 289
N+ + N+
Sbjct: 366 GGNFLHNLNIG 376
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 43/249 (17%)
Query: 77 IREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAY 136
+ + QK +EM+++++ + + T E + + + F+ E +
Sbjct: 110 VMDVNTQKGIEMTMAQWTRYY-----------ETPEEEREKLYNVISLEFSHTRLENMVQ 158
Query: 137 RTPLIFCDDWL-NMYLDHFRLHKDPESYQKDNDICCSDY----RFVYMGAKGSWTPLHAD 191
R + DW+ NM+ H + + + N I Y ++ M +G +T H D
Sbjct: 159 RPSTVDFIDWVDNMWPRHLKESQT----ESTNAILEMQYPKVQKYCLMSVRGCYTDFHVD 214
Query: 192 VFRSYSWSANVCGKKKWLFLSPSQCHLVFDRN--LKGCVYNIF--DDVSETDFPGFKKTL 247
+ W G K + + P+ +L N L G +IF D VS+ K
Sbjct: 215 FGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELK--- 271
Query: 248 WLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLLRDYNEAKEYIE 307
Q +PSGW H V+ DT+ N+ + +N+ + L+ YN IE
Sbjct: 272 -------QGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIP----MQLKIYN-----IE 315
Query: 308 DIRDICDDF 316
D + + F
Sbjct: 316 DRTRVPNKF 324
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDD 234
++ M + S+T H D + W + G+K + + P+ +L ++ +
Sbjct: 233 KYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLT--------LFECWSS 284
Query: 235 VSETD--FPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNL 288
S + F G + +C+ +Q + +F+P+GW H V D ++ N+ + N+
Sbjct: 285 SSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNI 340
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDD 234
++ M + S+T H D + W + G+K + + P+ +L ++ +
Sbjct: 149 KYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLT--------LFECWSS 200
Query: 235 VSETD--FPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNL 288
S + F G + +C+ +Q + +F+P+GW H V D ++ N+ + N+
Sbjct: 201 SSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNI 256
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDD 234
++ M + S+T H D + W + G+K + + P+ +L ++ +
Sbjct: 157 KYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLT--------LFECWSS 208
Query: 235 VSETD--FPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNL 288
S + F G + +C+ +Q + +F+P+GW H V D ++ N+ + N+
Sbjct: 209 SSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNI 264
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDD 234
++ M + S+T H D + W + G+K + + P+ +L ++ +
Sbjct: 160 KYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLT--------LFECWSS 211
Query: 235 VSETD--FPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNL 288
S + F G + +C+ +Q + +F+P+GW H V D ++ N+ + N+
Sbjct: 212 SSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNI 267
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H D ++ A + G K+ + P Q ++ V++ D
Sbjct: 172 LLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 225
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 226 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 284
Query: 285 G 285
G
Sbjct: 285 G 285
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H D ++ A + G K+ + P Q ++ V++ D
Sbjct: 186 LLLIGXEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 239
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 240 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPXYWWHHIESLLNGGITITVNF-WYK 298
Query: 285 G 285
G
Sbjct: 299 G 299
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H D ++ A + G K+ + P Q ++ V++ D
Sbjct: 186 LLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 239
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 240 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 298
Query: 285 G 285
G
Sbjct: 299 G 299
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H D ++ A + G K+ + P Q ++ V++ D
Sbjct: 188 LLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 241
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 242 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 300
Query: 285 G 285
G
Sbjct: 301 G 301
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H D ++ A + G K+ + P Q ++ V++ D
Sbjct: 189 LLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 242
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 243 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 301
Query: 285 G 285
G
Sbjct: 302 G 302
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQ--------CHLVFDRNLKGC 227
+ +G +G+ TP H D ++ A + G K+ + P Q H DR+ +
Sbjct: 186 LLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRHSQVD 243
Query: 228 VYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
FD+ FP F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 244 ----FDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 298
Query: 285 G 285
G
Sbjct: 299 G 299
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H ++ A + G K+ + P Q ++ V++ D
Sbjct: 186 LLLIGMEGNVTPAHYG--EQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 239
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 240 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 298
Query: 285 G 285
G
Sbjct: 299 G 299
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDV 235
+ +G +G+ TP H ++ A + G K+ + P Q ++ V++ D
Sbjct: 186 LLLIGMEGNVTPAH--YAEQQNFFAQIKGYKRCILFPPDQFECLYPY----PVHHPCDRQ 239
Query: 236 SETDF--------PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFN 284
S+ DF P F+ + E +++++P W+H + +L + TI++N W+
Sbjct: 240 SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF-WYK 298
Query: 285 G 285
G
Sbjct: 299 G 299
>pdb|1WLT|A Chain A, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
pdb|1WLT|B Chain B, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
Length = 196
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 225 KGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTIS---INHN 281
KG + ++ DV ++ P F K + E +E + ++++P G+ H LED+I I HN
Sbjct: 97 KGRILDVAVDVRKSS-PTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITHN 155
Query: 282 WFN 284
++
Sbjct: 156 EYS 158
>pdb|2B9U|A Chain A, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|C Chain C, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|D Chain D, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|B Chain B, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|E Chain E, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|F Chain F, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|G Chain G, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|H Chain H, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|I Chain I, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|J Chain J, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|K Chain K, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|L Chain L, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
Length = 176
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 225 KGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFN 284
KG + ++ DV ++ P F K + E +E + ++++P G+ H LED+I I N
Sbjct: 77 KGRILDVAVDVRKSS-PTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITHN 135
Query: 285 GYN 287
Y+
Sbjct: 136 EYS 138
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDD 234
+F G GS+T H D S + + G+K + +P++ + Y +
Sbjct: 298 QFCLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNF--------AAYQAHET 349
Query: 235 VSETD--FPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVW 292
+T F ++ + + +P+GW H V D++ N+ + NL
Sbjct: 350 SPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNL---- 405
Query: 293 DLLLRDYNEAKEYIEDIR 310
++ +R Y+ ++IR
Sbjct: 406 EMQMRVYHLENAIRKEIR 423
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 38 GLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREFTDQKRVE-MSVSEFVKN 96
GL +D + T + F FG + ADCG+R ++K +E + E +++
Sbjct: 104 GLDEDSDRAIEGATATSEYQTFFNPATFGSGE---ADCGLRPLFEKKSLEDKTERELLES 160
Query: 97 WLENSIMENSNASTNEANDKSVLYLK 122
+++ I+E S+A + + +L+ K
Sbjct: 161 YIDGRIVEGSDAEIGMSPWQVMLFRK 186
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 73 ADCGIREFTDQKRVE-MSVSEFVKNWLENSIMENSNASTNEANDKSVLYLK 122
ADCG+R ++K+V+ + E ++++E I+E +A + + +L+ K
Sbjct: 20 ADCGLRPLFEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRK 70
>pdb|3PTR|B Chain B, Phf2 Jumonji Domain
pdb|3PU3|A Chain A, Phf2 Jumonji Domain-Nog Complex
pdb|3PU3|B Chain B, Phf2 Jumonji Domain-Nog Complex
pdb|3PU8|B Chain B, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PU8|A Chain A, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PUA|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|B Chain B, Phf2 Jumonji-Nog-Ni(Ii)
Length = 392
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHL-VFDRNLKGCVYNIFD 233
++ + K S+T H D + +W + G+K + + P+ ++ +++R +
Sbjct: 176 KYCLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYER------WRSAS 229
Query: 234 DVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWD 293
+ SE F + +C +Q + +F+PSGW + D ++ ++ + ++ +
Sbjct: 230 NHSEMFFADQVDKCY-KCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSV----E 284
Query: 294 LLLRDY 299
+ +R Y
Sbjct: 285 MQMRAY 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,969,249
Number of Sequences: 62578
Number of extensions: 713877
Number of successful extensions: 1476
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 39
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)