Query 011537
Match_columns 483
No_of_seqs 280 out of 1489
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2131 Uncharacterized conser 100.0 4.5E-66 9.8E-71 514.1 8.1 371 1-421 22-427 (427)
2 KOG2130 Phosphatidylserine-spe 100.0 4.2E-53 9E-58 414.3 15.2 279 8-333 52-349 (407)
3 PF13621 Cupin_8: Cupin-like d 100.0 2.4E-41 5.1E-46 329.1 15.2 228 20-285 1-248 (251)
4 KOG2132 Uncharacterized conser 100.0 1.6E-29 3.4E-34 250.7 3.5 218 17-278 134-355 (355)
5 KOG2508 Predicted phospholipas 99.9 5.5E-24 1.2E-28 212.8 13.4 236 8-285 22-310 (437)
6 PF02373 JmjC: JmjC domain, hy 99.6 1.1E-15 2.4E-20 132.1 3.0 103 176-282 1-114 (114)
7 KOG1633 F-box protein JEMMA an 99.5 6.5E-14 1.4E-18 156.1 10.8 253 22-325 9-268 (776)
8 PF08007 Cupin_4: Cupin superf 99.4 3.6E-13 7.9E-18 138.0 10.8 106 173-296 114-222 (319)
9 COG2850 Uncharacterized conser 99.2 2.7E-11 5.8E-16 123.3 7.6 97 176-288 122-218 (383)
10 KOG3706 Uncharacterized conser 98.6 5.6E-08 1.2E-12 101.6 7.2 85 175-273 319-405 (629)
11 KOG1356 Putative transcription 98.6 8.5E-09 1.8E-13 113.8 0.8 244 20-295 530-845 (889)
12 COG2140 Thermophilic glucose-6 96.8 0.0054 1.2E-07 59.1 8.7 70 181-281 88-158 (209)
13 smart00558 JmjC A domain famil 96.5 0.0027 5.8E-08 48.4 3.3 32 172-205 25-56 (57)
14 PF00190 Cupin_1: Cupin; Inte 96.4 0.011 2.4E-07 53.6 7.4 80 177-285 39-122 (144)
15 KOG2132 Uncharacterized conser 96.1 0.0031 6.6E-08 64.3 2.2 92 180-274 181-278 (355)
16 TIGR03404 bicupin_oxalic bicup 95.9 0.055 1.2E-06 57.0 10.7 65 177-274 250-314 (367)
17 PF06560 GPI: Glucose-6-phosph 95.2 0.027 5.9E-07 53.5 4.9 39 247-285 108-146 (182)
18 PF07883 Cupin_2: Cupin domain 94.0 0.084 1.8E-06 41.0 4.2 56 183-275 8-63 (71)
19 KOG2131 Uncharacterized conser 93.7 0.015 3.4E-07 60.0 -0.5 92 60-162 89-181 (427)
20 TIGR03037 anthran_nbaC 3-hydro 93.6 0.36 7.9E-06 44.9 8.3 75 173-281 28-102 (159)
21 TIGR02272 gentisate_1_2 gentis 93.4 0.24 5.3E-06 51.5 7.7 42 249-293 120-161 (335)
22 PRK04190 glucose-6-phosphate i 93.1 0.15 3.2E-06 48.9 5.2 28 248-275 119-146 (191)
23 PRK13264 3-hydroxyanthranilate 93.0 0.39 8.5E-06 45.5 7.6 74 173-280 34-107 (177)
24 KOG0958 DNA damage-responsive 93.0 0.066 1.4E-06 59.4 2.8 117 172-289 172-299 (690)
25 COG0662 {ManC} Mannose-6-phosp 91.0 1.1 2.4E-05 39.8 7.9 60 176-274 40-100 (127)
26 PF06052 3-HAO: 3-hydroxyanthr 90.3 1.7 3.6E-05 40.1 8.3 75 172-280 32-106 (151)
27 COG1917 Uncharacterized conser 90.0 1.7 3.7E-05 38.4 8.2 66 177-280 47-115 (131)
28 smart00835 Cupin_1 Cupin. This 89.6 1.7 3.7E-05 39.3 8.0 66 177-274 35-100 (146)
29 TIGR03404 bicupin_oxalic bicup 87.8 2.5 5.5E-05 44.6 9.0 65 177-275 72-136 (367)
30 PF05995 CDO_I: Cysteine dioxy 87.0 2 4.4E-05 40.4 7.0 76 181-280 83-161 (175)
31 TIGR02466 conserved hypothetic 86.9 3.6 7.8E-05 39.8 8.7 34 249-282 162-198 (201)
32 PF05523 FdtA: WxcM-like, C-te 86.6 2.2 4.8E-05 38.3 6.7 72 180-285 40-112 (131)
33 PF01050 MannoseP_isomer: Mann 85.0 1.8 3.8E-05 40.1 5.3 25 250-274 103-127 (151)
34 COG4101 Predicted mannose-6-ph 83.0 0.9 1.9E-05 40.3 2.3 25 250-274 89-113 (142)
35 PF02041 Auxin_BP: Auxin bindi 82.4 4.8 0.0001 37.2 6.8 65 181-274 52-116 (167)
36 PF13759 2OG-FeII_Oxy_5: Putat 80.7 6.4 0.00014 33.2 6.8 36 246-281 63-101 (101)
37 PRK13290 ectC L-ectoine syntha 80.7 2.7 5.9E-05 37.5 4.7 31 250-280 76-106 (125)
38 COG1898 RfbC dTDP-4-dehydrorha 77.8 13 0.00027 35.3 8.3 80 176-280 48-129 (173)
39 TIGR01221 rmlC dTDP-4-dehydror 76.8 8.8 0.00019 36.4 7.1 33 247-279 94-128 (176)
40 PF09313 DUF1971: Domain of un 72.7 34 0.00074 28.4 8.7 57 194-279 24-80 (82)
41 PF05899 Cupin_3: Protein of u 72.0 2.8 6E-05 33.7 2.1 16 250-265 45-60 (74)
42 PF00908 dTDP_sugar_isom: dTDP 71.4 21 0.00046 33.8 8.2 34 247-280 94-129 (176)
43 KOG2107 Uncharacterized conser 71.2 5.4 0.00012 37.4 4.0 28 246-273 113-140 (179)
44 PRK09943 DNA-binding transcrip 70.8 6.7 0.00015 36.9 4.7 31 250-280 147-177 (185)
45 TIGR01479 GMP_PMI mannose-1-ph 70.8 13 0.00029 40.3 7.6 26 249-274 415-440 (468)
46 PLN00212 glutelin; Provisional 70.2 27 0.00058 38.4 9.7 73 182-285 357-429 (493)
47 TIGR03214 ura-cupin putative a 69.4 5.3 0.00011 40.1 3.8 25 250-274 219-243 (260)
48 KOG3130 Uncharacterized conser 68.8 8.4 0.00018 40.8 5.2 68 248-318 44-111 (514)
49 KOG1633 F-box protein JEMMA an 68.3 2.7 5.8E-05 48.5 1.6 98 181-285 481-584 (776)
50 PF03079 ARD: ARD/ARD' family; 67.3 8 0.00017 36.0 4.3 34 246-279 112-146 (157)
51 COG5285 Protein involved in bi 65.9 14 0.00031 37.7 6.1 96 182-286 129-233 (299)
52 PLN00212 glutelin; Provisional 64.0 38 0.00083 37.2 9.4 90 177-275 85-174 (493)
53 COG3450 Predicted enzyme of th 60.4 7.2 0.00016 34.6 2.5 20 250-269 83-102 (116)
54 PF02311 AraC_binding: AraC-li 57.9 17 0.00037 30.7 4.5 25 250-274 42-66 (136)
55 PRK15131 mannose-6-phosphate i 57.4 11 0.00024 40.1 3.8 31 250-281 238-268 (389)
56 COG1482 ManA Phosphomannose is 57.4 11 0.00024 38.9 3.6 30 250-280 159-188 (312)
57 PRK15457 ethanolamine utilizat 56.8 14 0.0003 36.6 4.1 25 249-273 193-217 (233)
58 PF06249 EutQ: Ethanolamine ut 51.1 12 0.00026 34.7 2.5 18 249-266 113-130 (152)
59 PRK15460 cpsB mannose-1-phosph 50.1 54 0.0012 36.0 7.7 26 249-274 424-449 (478)
60 TIGR00218 manA mannose-6-phosp 47.4 12 0.00027 38.1 2.2 20 249-268 151-170 (302)
61 COG4766 EutQ Ethanolamine util 45.3 14 0.00031 34.2 2.0 17 250-266 137-153 (176)
62 KOG2508 Predicted phospholipas 45.3 30 0.00064 36.5 4.5 46 239-284 351-403 (437)
63 KOG3995 3-hydroxyanthranilate 44.7 47 0.001 32.5 5.4 74 173-280 33-106 (279)
64 PLN02288 mannose-6-phosphate i 42.8 15 0.00033 39.1 2.1 30 250-280 252-281 (394)
65 COG3435 Gentisate 1,2-dioxygen 40.9 72 0.0016 33.0 6.3 72 183-294 102-173 (351)
66 TIGR03214 ura-cupin putative a 40.6 39 0.00084 33.9 4.5 25 250-274 99-123 (260)
67 TIGR03027 pepcterm_export puta 40.0 17 0.00036 33.7 1.6 17 250-266 149-165 (165)
68 PRK13502 transcriptional activ 39.7 37 0.0008 33.6 4.2 30 250-279 57-86 (282)
69 TIGR02272 gentisate_1_2 gentis 36.7 1.4E+02 0.0029 31.4 7.8 27 250-276 289-315 (335)
70 PF12852 Cupin_6: Cupin 36.5 32 0.00069 32.1 3.0 25 250-274 56-80 (186)
71 COG3822 ABC-type sugar transpo 35.6 1.6E+02 0.0034 28.5 7.3 32 248-279 152-183 (225)
72 PRK11171 hypothetical protein; 34.9 63 0.0014 32.4 5.0 25 250-274 102-126 (266)
73 KOG1246 DNA-binding protein ju 33.7 44 0.00096 39.5 4.2 113 175-289 331-455 (904)
74 PRK11171 hypothetical protein; 33.5 63 0.0014 32.5 4.7 29 250-278 224-252 (266)
75 PF05721 PhyH: Phytanoyl-CoA d 32.8 62 0.0014 29.5 4.3 26 246-271 177-202 (211)
76 PF07385 DUF1498: Protein of u 30.5 80 0.0017 31.2 4.6 92 176-279 90-184 (225)
77 COG1791 Uncharacterized conser 29.3 58 0.0013 30.9 3.3 28 247-274 116-143 (181)
78 PRK13501 transcriptional activ 28.9 63 0.0014 32.2 3.9 25 250-274 57-81 (290)
79 PRK10296 DNA-binding transcrip 28.4 82 0.0018 31.1 4.6 23 250-272 62-84 (278)
80 PTZ00473 Plasmodium Vir superf 25.9 7.4E+02 0.016 26.7 11.0 153 292-453 11-190 (420)
81 PF11699 CENP-C_C: Mif2/CENP-C 25.2 1.3E+02 0.0029 25.0 4.5 29 249-277 51-79 (85)
82 COG5228 POP2 mRNA deadenylase 25.1 97 0.0021 30.7 4.1 62 303-384 118-179 (299)
83 TIGR03028 EpsE polysaccharide 23.5 41 0.00089 33.1 1.3 15 252-266 225-239 (239)
84 PRK13500 transcriptional activ 22.6 1.1E+02 0.0024 31.1 4.3 25 250-274 87-111 (312)
85 PF05372 Delta_lysin: Delta ly 21.0 47 0.001 21.2 0.7 19 449-467 6-24 (25)
86 PF13640 2OG-FeII_Oxy_3: 2OG-F 20.9 88 0.0019 25.7 2.7 30 253-282 66-99 (100)
87 PF01238 PMI_typeI: Phosphoman 20.2 58 0.0013 34.4 1.7 22 250-271 251-272 (373)
No 1
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-66 Score=514.08 Aligned_cols=371 Identities=32% Similarity=0.536 Sum_probs=307.6
Q ss_pred CccccCCCceeeecCCCCCHHHHHHHHhCCCCcEEEEcCCCCcccc----ccCcccC-----------------------
Q 011537 1 MGIRIGGGQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRAC----KDWVTEN----------------------- 53 (483)
Q Consensus 1 ~~~~~~~~~IeRi~~~~lS~eeF~~~yl~~nkPVII~g~~~~WpA~----~~Wt~~~----------------------- 53 (483)
|+..+- +.|+|+.++.+++..|.++|..++.||+|.++.++|+|. ..|....
T Consensus 22 ~~~qlr-~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~ 100 (427)
T KOG2131|consen 22 MEPQLR-PCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKN 100 (427)
T ss_pred cchhhh-hhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCcc
Confidence 566677 889999999999999999999999999999999999998 5555422
Q ss_pred -------CCCchhHHHhhhCCceEEEEeCCcccccCcceeeecHHHHHHHHHhccccccccccccccCCCcceeeeeccc
Q 011537 54 -------GQPNLLFFSTHFGKSKVQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHF 126 (483)
Q Consensus 54 -------~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~~~~~~m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~ 126 (483)
+.+|.+||.+.||+..|+|+.|+..+.. .|+++++.-+.......+ ...+++|++|||+
T Consensus 101 v~~~~~s~f~~~~~Le~ny~d~~v~~a~~~e~e~~-----~l~lad~~~~e~~~~~~~---------~q~p~ly~kDwHL 166 (427)
T KOG2131|consen 101 VFLCDLSLFPDYEYLERNYGDFVVPVANCNEKERY-----SLKLADWEFREEQVQLAC---------PQAPSLYGKDWHL 166 (427)
T ss_pred ccccccccCccHHHHHhhhhhcchhhccccchhhh-----hhhhccchhHHHhHhhhc---------CCCccccccchhe
Confidence 3345666666666666666666543322 144444444443332221 2356899999999
Q ss_pred cccCCccccccCCccccchhHHHhhhhcccCCCCccccccCCccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEE
Q 011537 127 AKEYPEYVAYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKK 206 (483)
Q Consensus 127 ~~~~P~l~~y~~P~~f~dDwln~~~d~~~~~~~pd~~~~~~~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrK 206 (483)
....|....|.+|.+|++||+|+++... .++||||+||||+|||||+|.|+++++||+++|||+|
T Consensus 167 ~~~~d~~~~~~~pd~F~~dwlne~~i~~---------------~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~K 231 (427)
T KOG2131|consen 167 YRFLDNDFPYWTPDLFAKDWLNEFVIDG---------------ESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRK 231 (427)
T ss_pred eeecCcccccccchhhhhcccchhhccC---------------CCCceeEEEeccCCCCCccchhhhcCCcceeeeecce
Confidence 9999988889999999999999987531 2489999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccccCCCCCCccccccCC-CCcccCCCCCCceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCC
Q 011537 207 KWLFLSPSQCHLVFDRNLKGCVYNIFDD-VSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNG 285 (483)
Q Consensus 207 rW~LfPP~~~~~Ly~~~~~s~~~di~d~-~d~~~fP~~~~a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~ 285 (483)
+|.|+||+++..|+++. ++.++++... .|. + ..++++|+|+|||+||||+||+|||.||+|||||||||+|+
T Consensus 232 rWl~~pP~qe~~l~dr~-gnlp~~~~~~~ld~-----~-~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~ 304 (427)
T KOG2131|consen 232 RWLLYPPEQEQTLADRY-GNLPLPSWITKLDL-----F-RGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNA 304 (427)
T ss_pred eEEEeChHHhhhhhhhc-cCcCCccccccccc-----c-ccchhhhhccCCceeeccCccccccccccceeeeccccccc
Confidence 99999999999998874 3445543211 111 1 35679999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccCCCHHHHHHHHHHHhhhhHHHHHhhccccccccCCCC
Q 011537 286 YNLSWVWDLLLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFSFLSRFSLVNVVILFHLRRDYENQIWSSS 365 (483)
Q Consensus 286 ~nl~~~~~~l~~~l~~~~~~~~d~~~~~~~f~~~cq~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 365 (483)
+||.+||.+|++++.++.++++| ++|++|+.+||.++++++|||+.+|+.|+.++| .|-+ .....+++
T Consensus 305 ~nl~~~w~~Lk~~y~a~~esisd--d~md~~~~~cq~~lra~~gin~~ef~~f~~~~a-----~l~h-----~~~~~~a~ 372 (427)
T KOG2131|consen 305 TNLAWMWDALKEDYPALAESISD--DLMDDFPLECQFSLRATEGINANEFIYFPDFWA-----MLKH-----ATLNRDAS 372 (427)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhh--hccccchhhhhhhhhhhccccccceEeehHHHH-----HHHH-----HHhccchh
Confidence 99999999999999999999999 889999999999999999999999999999998 2222 12235567
Q ss_pred ccccchhccHHHHHHHHHHhccccccccccchhhhhHHhcCChhHHHHHhhhhHHH
Q 011537 366 PVARHLALNLVSIQKIALKMKSVNDLAGSFGFFMYLKETLDDPEFLKLCMGFCRTY 421 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
++...+++|+..+-+||..|+....++.+ ..+.|..+.+||++++++.++.+++|
T Consensus 373 l~~s~~~~~~~~q~evl~~l~~~~~~t~~-~t~~dsp~~~ed~qqlr~a~d~~~~~ 427 (427)
T KOG2131|consen 373 LFISTFLSDWPIQPEVLPPLSWEYSITKN-ITLNDSPGSLEDSQQLRSARDTIFKS 427 (427)
T ss_pred hhHHhhhcccccchhhhcceeecCceecc-chhccCCccccccccchHHHHhhcCC
Confidence 88899999999999999999999999998 88999999999999999999887764
No 2
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-53 Score=414.27 Aligned_cols=279 Identities=27% Similarity=0.488 Sum_probs=226.2
Q ss_pred CceeeecCCCCCHHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCcccccCcceee
Q 011537 8 GQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREFTDQKRVE 87 (483)
Q Consensus 8 ~~IeRi~~~~lS~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~~~~~~ 87 (483)
++++|.++..||.+||+++|.+|++||||+|++.+|||..+|| +++|.++||+.++.+...+ ++..++
T Consensus 52 dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT-------~drLskkyrnq~Fkcged~-----~gnsv~ 119 (407)
T KOG2130|consen 52 DNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWT-------LDRLSKKYRNQKFKCGEDN-----NGNSVK 119 (407)
T ss_pred ccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhh-------HHHHHHHhcCccccccccC-----CCccee
Confidence 4566666678999999999999999999999999999999999 5999999999988775432 345799
Q ss_pred ecHHHHHHHHHhccccccccccccccCCCcceeeeeccccccCC--ccc-cccCCccccchhHHHhhhhcccCCCCcccc
Q 011537 88 MSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYP--EYV-AYRTPLIFCDDWLNMYLDHFRLHKDPESYQ 164 (483)
Q Consensus 88 m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~~~~~P--~l~-~y~~P~~f~dDwln~~~d~~~~~~~pd~~~ 164 (483)
|+|+.|++|+.+ +++++|+|++|-.|.+..| .|. +|.+|.||.+|||.- ++.
T Consensus 120 MKmkyY~~Ym~~-------------~RddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~y-~g~----------- 174 (407)
T KOG2130|consen 120 MKMKYYIEYMKS-------------TRDDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQY-LGE----------- 174 (407)
T ss_pred eeHHHHHHHHhc-------------cccCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHHh-cCc-----------
Confidence 999999999986 3689999999999998888 554 799999999999974 322
Q ss_pred ccCCccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCccccc-CCC--CCCccccc---cCC-CCc
Q 011537 165 KDNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVF-DRN--LKGCVYNI---FDD-VSE 237 (483)
Q Consensus 165 ~~~~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly-~~~--~~s~~~di---~d~-~d~ 237 (483)
-++|+|||+.|||++|+|.+|+|+..+.||+++|+|+|||.||||...+.+. +.. .+.....+ +.. -+.
T Consensus 175 ----e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e~g~~~de~itwf~~~y~r 250 (407)
T KOG2130|consen 175 ----ERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDEGGKQPDEIITWFSTIYPR 250 (407)
T ss_pred ----ccCCCceeEEecCCCCCceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccccCCCCcceechhhhcccc
Confidence 2468999999999999999999999999999999999999999999987543 211 11111111 111 134
Q ss_pred ccCCCCCC-ceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 011537 238 TDFPGFKK-TLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLL--------LRDYNEAKEYIED 308 (483)
Q Consensus 238 ~~fP~~~~-a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~~~~~~l--------~~~l~~~~~~~~d 308 (483)
.++|.+.. -+|+||+|.|||++|||+||||.|.|+++||+|++||++..|++.||... +.++.-+...+++
T Consensus 251 t~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw~ktv~Grpkls~~w~~~L~~~~pe 330 (407)
T KOG2130|consen 251 TQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVWHKTVRGRPKLSRKWARLLALQRPE 330 (407)
T ss_pred ccCCCCccccCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceeeecccCCCcchhhHHHHHHhhcChh
Confidence 56776643 47999999999999999999999999999999999999999999999763 4566666777777
Q ss_pred HHHhhhhHHHHHHHhhhhccCCCHH
Q 011537 309 IRDICDDFEGLCQRNLAANTGMNFY 333 (483)
Q Consensus 309 ~~~~~~~f~~~cq~~~~~~~g~~~~ 333 (483)
+.++.++ ..+...+|+++.
T Consensus 331 l~~l~~s------~~~~e~~~~~~~ 349 (407)
T KOG2130|consen 331 LADLADS------THLEESTGLASD 349 (407)
T ss_pred HHHHhhh------hccccccCcccc
Confidence 7777663 344556665543
No 3
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=100.00 E-value=2.4e-41 Score=329.10 Aligned_cols=228 Identities=29% Similarity=0.571 Sum_probs=164.6
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCc---ccc--------cCcceeee
Q 011537 20 YSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGI---REF--------TDQKRVEM 88 (483)
Q Consensus 20 ~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~---~~f--------~~~~~~~m 88 (483)
++||+++|+.+++||||+|++.+|||+++|+. ...+++||++++|+..|.|..+.. ..+ .......|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~--~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTD--DEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERM 78 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-------HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEE
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccc--hhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEEC
Confidence 58999999999999999999999999999994 223579999999999999976532 112 12357899
Q ss_pred cHHHHHHHHHhccccccccccccccCCCcceeeeeccccccCCccccc-cCCccccchhHHHhhhhcccCCCCccccccC
Q 011537 89 SVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAY-RTPLIFCDDWLNMYLDHFRLHKDPESYQKDN 167 (483)
Q Consensus 89 ~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~~~~~P~l~~y-~~P~~f~dDwln~~~d~~~~~~~pd~~~~~~ 167 (483)
+|++|++.+..... ......+|+.++++...+|++... .+| +..++++.
T Consensus 79 ~~~~f~~~~~~~~~----------~~~~~~~y~~~~~~~~~~~~l~~~~~~~--~~~~~~~~------------------ 128 (251)
T PF13621_consen 79 PFRDFLDRLRANRD----------QRDKPYYYLQNWNLFEDFPELREDNDLP--FPPELFGK------------------ 128 (251)
T ss_dssp EHHHHHHHHHHSCH----------STSSSEEEEEEETHHHHSHHHHCCS-CH--HHHCHSCC------------------
T ss_pred cHHHHHHHHHhccc----------ccCCceEEEecCchHHHhhhhhhccccc--cchhhccc------------------
Confidence 99999999887542 124568999999988888887643 222 11122110
Q ss_pred CccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCC-----CccccccCCCCcccCCC
Q 011537 168 DICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLK-----GCVYNIFDDVSETDFPG 242 (483)
Q Consensus 168 ~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~-----s~~~di~d~~d~~~fP~ 242 (483)
.....++|||++|+.|++|+|+.+ +|++||.|+|+|+||||.+...||+.... .+.+|+ +.+|.++||+
T Consensus 129 ---~~~~~~l~ig~~gs~t~lH~D~~~--n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~-~~~d~~~~p~ 202 (251)
T PF13621_consen 129 ---EPQSSNLWIGPPGSFTPLHYDPSH--NLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDP-DNPDLERFPK 202 (251)
T ss_dssp ---HCCEEEEEEE-TTEEEEEEE-SSE--EEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-T-TS--TTT-CG
T ss_pred ---CccccEEEEeCCCceeeeeECchh--hhhhccCCCEEEEEECCccccccccceecccccceeeeec-cChhhhhhhh
Confidence 012347999999999999999954 56999999999999999999999876521 223443 5678899999
Q ss_pred CCCceeEEEEEeCCcEEEeCCCCeEEEEeC--CC-cEEEeeecCCC
Q 011537 243 FKKTLWLECTQEQNEIIFVPSGWYHQVHNL--ED-TISINHNWFNG 285 (483)
Q Consensus 243 ~~~a~~~e~vq~pGDiLFVPsGWwHqV~nl--ed-sISIn~Nf~~~ 285 (483)
++.+++++|+|+|||+||||+||||+|+|+ ++ |||||+||.+.
T Consensus 203 ~~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 203 FRKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp GGG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 999999999999999999999999999999 77 99999988765
No 4
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-29 Score=250.74 Aligned_cols=218 Identities=22% Similarity=0.430 Sum_probs=181.3
Q ss_pred CCCHHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCcccccCcceeeecHHHHHHH
Q 011537 17 EVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREFTDQKRVEMSVSEFVKN 96 (483)
Q Consensus 17 ~lS~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~~~~~~m~l~efl~~ 96 (483)
.++.++|..+++.++.|+|++|...+|||.++|. ++|+.+.-|.+.|+|....+..-.+....-|++.+|+.+
T Consensus 134 ~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~-------l~~l~~va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R 206 (355)
T KOG2132|consen 134 RLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS-------LGYLQQVAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKR 206 (355)
T ss_pred chHHHHHHHHhhcCCCceEEecccccchHhhhcc-------hhHHHhcccceeeeeecccccchhHHHhhhHHHhhhhhh
Confidence 5899999999999999999999999999999996 599999999999999876542222345678888999887
Q ss_pred HHhccccccccccccccCCCcceeeeeccccccCCccc-cccCCccccchhHHHhhhhcccCCCCccccccCCccCCCcc
Q 011537 97 WLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYV-AYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYR 175 (483)
Q Consensus 97 ~~~~~~~~~~~as~~~~~~~~~lYL~d~~~~~~~P~l~-~y~~P~~f~dDwln~~~d~~~~~~~pd~~~~~~~i~~~dyr 175 (483)
....+ .+.++|+.+.++..+.|++. +...|.|....-++ ++ ..-+
T Consensus 207 ~~~~~-------------p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~------------------~~---~v~~ 252 (355)
T KOG2132|consen 207 CILFE-------------PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFE------------------NE---VVDI 252 (355)
T ss_pred hhcCC-------------ccccchhhhhhhhccchhhhhccCCCceeecCCCC------------------cc---ccce
Confidence 66533 23689999999999999986 57778764321000 00 1124
Q ss_pred EEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCC---CCccccccCCCCcccCCCCCCceeEEEE
Q 011537 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNL---KGCVYNIFDDVSETDFPGFKKTLWLECT 252 (483)
Q Consensus 176 ~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~---~s~~~di~d~~d~~~fP~~~~a~~~e~v 252 (483)
+.|+||+|+.||+|.|+.+|+ .+||.|+|+|+|+||..+..+||... ..+.+|+ ++||.+.||++.+++.++|+
T Consensus 253 ~~w~GpaGtV~pih~dp~hNi--~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdv-enPdlk~fp~~~k~~~l~~l 329 (355)
T KOG2132|consen 253 NAWIGPAGTVLPIHMDPWHNI--LSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDV-ENPDLKAFPKFAKARFLDCL 329 (355)
T ss_pred eEEeccCCceeccccccccce--eeeeecceEEEEecCcccCCCCCccchhhccccccc-CCCChhhhhHHHHHHHHHHh
Confidence 789999999999999999999 99999999999999999999998752 2455564 78999999999999999999
Q ss_pred EeCCcEEEeCCCCeEEEEeCCCcEEE
Q 011537 253 QEQNEIIFVPSGWYHQVHNLEDTISI 278 (483)
Q Consensus 253 q~pGDiLFVPsGWwHqV~nledsISI 278 (483)
++|||+||||.-|||.|++++.++|+
T Consensus 330 L~pGe~L~iP~kwwhyvrs~d~s~s~ 355 (355)
T KOG2132|consen 330 LEPGEALFIPPKWWHYVRSLDKSFSV 355 (355)
T ss_pred cCCchhccccHHHhhhhhhccccccC
Confidence 99999999999999999999988764
No 5
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=99.91 E-value=5.5e-24 Score=212.76 Aligned_cols=236 Identities=19% Similarity=0.343 Sum_probs=170.0
Q ss_pred CceeeecCCCCCHHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCcccccC-----
Q 011537 8 GQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREFTD----- 82 (483)
Q Consensus 8 ~~IeRi~~~~lS~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~----- 82 (483)
-.|.+.+. .+|+-+|+++|+.+|+||||+.+..+|||.++|+. .+||....||..|.|+..... |.+
T Consensus 22 ~~v~~lD~-~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~------p~Yl~~algd~vvsvaitPng-yadgav~~ 93 (437)
T KOG2508|consen 22 VLVNLLDL-TPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQ------PDYLLSALGDIVVSVAITPNG-YADGAVMS 93 (437)
T ss_pred cccccccC-CCchHHHHHhhhcCCCcEEEecccccCchhhccCc------hHHHHHhccCeEEEEEeCCCC-cccccccc
Confidence 56788884 89999999999999999999999999999999996 689999999999999854321 111
Q ss_pred -------cceeeecHHHHHHHHHhccccccccccccccCCCcceeeee--ccccccCCccc-cccCCccccchhHHHhhh
Q 011537 83 -------QKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKD--WHFAKEYPEYV-AYRTPLIFCDDWLNMYLD 152 (483)
Q Consensus 83 -------~~~~~m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d--~~~~~~~P~l~-~y~~P~~f~dDwln~~~d 152 (483)
..-++|++++-+.....+. +....+|+.+ ..+..+.|.+. +...-.+ +|..+...
T Consensus 94 g~e~f~~pae~KlklsevL~vl~~~~------------~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~---~wa~eafg 158 (437)
T KOG2508|consen 94 GNEMFIKPAEQKLKLSEVLYVLTQYD------------ESNEVLYGQKQNSNLVKELPPLATDLLLTDF---SWAPEAFG 158 (437)
T ss_pred Ccceeechhhhhccchhhheehhccc------------CCCceeehhhhcccccccccccccccccccc---cccHHHhC
Confidence 1124677777777666543 2456788864 23455556543 1111000 23332211
Q ss_pred hcccCCCCccccccCCccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccc----cCCCC----
Q 011537 153 HFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLV----FDRNL---- 224 (483)
Q Consensus 153 ~~~~~~~pd~~~~~~~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~L----y~~~~---- 224 (483)
..|+-.++|||...++|.+|.|+++|+ +|+|+|.|+|+|+||++.+.| |+...
T Consensus 159 -----------------k~PdavNlWiG~~~avTSlHkDhyENl--YaViSGeKhFvlipP~d~~~lp~eiyp~g~ysy~ 219 (437)
T KOG2508|consen 159 -----------------KVPDAVNLWIGKSEAVTSLHKDHYENL--YAVISGEKHFVLIPPDDANQLPLEIYPNGLYSYE 219 (437)
T ss_pred -----------------CChhheeeeecccccccccccccccce--EEEEeccceEEEeCcccccccceeecCCcceeee
Confidence 124556899999999999999999999 999999999999999998865 34321
Q ss_pred -CCccccc-------------------c-----CCCCcccCCCCCC-ceeEEEEEeCCcEEEeCCCCeEEEEeC----CC
Q 011537 225 -KGCVYNI-------------------F-----DDVSETDFPGFKK-TLWLECTQEQNEIIFVPSGWYHQVHNL----ED 274 (483)
Q Consensus 225 -~s~~~di-------------------~-----d~~d~~~fP~~~~-a~~~e~vq~pGDiLFVPsGWwHqV~nl----ed 274 (483)
....+-+ . ...+..++|.+.. ..+..+.+.+|+++|.|..|.|.|-.. +.
T Consensus 220 ~e~g~fk~e~~dEe~~~~a~~~~svd~~~s~~~~a~~~~k~~l~~~~~k~~~~rv~a~~i~~lp~~w~h~~sq~~gd~~~ 299 (437)
T KOG2508|consen 220 GEDGPFKSEGLDEEDAAIAKTWFSVDPIGSPKELAVPQEKIPLLEAEYKPEMDRVLAGQILYLPEDWFHHVSQVGGDPES 299 (437)
T ss_pred cCCCceeecccchhhhhhcceeeeecccCCHHHhccchhhCccccccccceeeeeeccccccChhhhhhhccccCCCccc
Confidence 1111100 0 0124567887654 688899999999999999999999887 55
Q ss_pred cEEEeeecCCC
Q 011537 275 TISINHNWFNG 285 (483)
Q Consensus 275 sISIn~Nf~~~ 285 (483)
+|++|.++--.
T Consensus 300 ~Iavn~~~d~~ 310 (437)
T KOG2508|consen 300 DIAVNEWYDIE 310 (437)
T ss_pred eeEEeeecccc
Confidence 99999965443
No 6
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.56 E-value=1.1e-15 Score=132.08 Aligned_cols=103 Identities=28% Similarity=0.427 Sum_probs=68.9
Q ss_pred EEEecCCCCCCCcccccCCCcc-ceeEEEeEEEEEEeCCCCccccc----CCC---CCCccccccCCCCcccCCC-C--C
Q 011537 176 FVYMGAKGSWTPLHADVFRSYS-WSANVCGKKKWLFLSPSQCHLVF----DRN---LKGCVYNIFDDVSETDFPG-F--K 244 (483)
Q Consensus 176 ~l~iGp~gs~T~lH~D~~~~~s-W~~qV~GrKrW~LfPP~~~~~Ly----~~~---~~s~~~di~d~~d~~~fP~-~--~ 244 (483)
+++||.++|+|++|.|.....+ |+....|.|.|.++||.+...+. +.. .+.... .....-.|. + .
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~l~~~ 76 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKESQNCPQFLD----HKNIFVSPEQLKKA 76 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHHHHHSTTGGC----TGGEEEGHHHHHHT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhccccccccccc----ccccccceeeeecc
Confidence 5899999999999999999984 88888899999999999876432 110 000000 000000111 1 2
Q ss_pred CceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeec
Q 011537 245 KTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNW 282 (483)
Q Consensus 245 ~a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf 282 (483)
+.+.+.++|+|||+||||+||||||.|+++||+++.||
T Consensus 77 gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 77 GIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred CcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 45789999999999999999999999999999999997
No 7
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=99.50 E-value=6.5e-14 Score=156.09 Aligned_cols=253 Identities=21% Similarity=0.325 Sum_probs=163.9
Q ss_pred HHHHHHhCCCCcEEEEc---CCCCccccccCcccCCCCchhHHHhhhCC-ceEEEEeCCcccccCcceeeecHHHHHHHH
Q 011537 22 EFVEKYMAKNQPVVLTG---LMDDWRACKDWVTENGQPNLLFFSTHFGK-SKVQVADCGIREFTDQKRVEMSVSEFVKNW 97 (483)
Q Consensus 22 eF~~~yl~~nkPVII~g---~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd-~~V~V~d~~~~~f~~~~~~~m~l~efl~~~ 97 (483)
+|.++-. .+.|.++.+ +...-|+- ..+. +--+...|. +.+.|.+.++ |+..+|+|.+|++|+
T Consensus 9 ef~~~~~-~~~p~~~~~~~~lg~~~p~p-~f~v-------~dv~~~vg~~r~~~v~dv~~-----q~~~km~~~~~~~yy 74 (776)
T KOG1633|consen 9 EFLQDNG-LRVPILFRNKDGLGMTLPSP-DFTV-------NDVKELVGSDRMIDVVDVNT-----QKDCKMTLKEFVKYY 74 (776)
T ss_pred hhhhhcc-cccchhhccCCCccccCCCC-Ccch-------hhhHHhhCCCccceeeeeec-----cccccccHHHHhhhh
Confidence 5665444 468888864 22233332 3332 234445564 7888888754 578899999999999
Q ss_pred HhccccccccccccccCCCcceeee-eccccccCCcccc-ccCCccccc-hhHHHhhhhcccCCCCccccccCCccCCCc
Q 011537 98 LENSIMENSNASTNEANDKSVLYLK-DWHFAKEYPEYVA-YRTPLIFCD-DWLNMYLDHFRLHKDPESYQKDNDICCSDY 174 (483)
Q Consensus 98 ~~~~~~~~~~as~~~~~~~~~lYL~-d~~~~~~~P~l~~-y~~P~~f~d-Dwln~~~d~~~~~~~pd~~~~~~~i~~~dy 174 (483)
..... ..+|-. ...|... -+.. ...|..... ||...+|..-....-| ..-
T Consensus 75 ~~~~~--------------~R~yNVisLEfS~T--rl~~~V~~P~ivr~ldwV~n~wP~~~~~~~P-----------~vq 127 (776)
T KOG1633|consen 75 SSPQR--------------KRLYNVISLEFSDT--RLSNLVESPEIVRKLDWVDNQWPDDLKMEYP-----------KVQ 127 (776)
T ss_pred cCcch--------------hhhhheeccccCcc--hHHhcCCCchhhhhhhchhccCCchhccccc-----------ccc
Confidence 87532 235532 2222111 0112 345655543 8888877542211111 112
Q ss_pred cEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEe
Q 011537 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQE 254 (483)
Q Consensus 175 r~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~ 254 (483)
.++.|+.+++.|.+|.|+.++.+|+..+.|.|.++|+||......+...+.++.- .+...|+.- -..++.|+++
T Consensus 128 kyclmsv~~~Ytdfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~ye~w~~s~~-----q~~~ffGd~-VdkC~~~~l~ 201 (776)
T KOG1633|consen 128 KYCLMSVKDSYTDFHIDFGGTSVWYHILAGEKTFYLIPPTCENLELYECWESSTP-----QDEIFFGDC-VDKCYKCILK 201 (776)
T ss_pred cceeeeccccccccccCCCCcchhhhhhccccceeeeCCcccchhhhhhhhhccc-----ccccccCCc-cceeEEEEec
Confidence 4688999999999999999999999999999999999999988543323332211 122233321 2468999999
Q ss_pred CCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 011537 255 QNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLLRDYNEAKEYIEDIRDICDDFEGLCQRNLA 325 (483)
Q Consensus 255 pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~~~~~~l~~~l~~~~~~~~d~~~~~~~f~~~cq~~~~ 325 (483)
+|+++|||+||.|.|++..+++++..||+..-++...+....-| .+-.+.+.- .++.|+..|-.++.
T Consensus 202 ~g~T~~iPsGwIhAV~Tp~d~l~fgGnflhsl~i~~QLr~y~vE---~~l~i~~kf-r~P~fe~~cwyv~~ 268 (776)
T KOG1633|consen 202 QGQTLFIPSGWIHAVLTPTDCLVFGGNFLHSLTIEMQLRIYNVE---NRLKIPDKF-RYPFFEEICWYVLK 268 (776)
T ss_pred cCceEecccceeEeeecCcchheeccchhhhhhhHHHHHHHHhh---hhcccchhe-eCCcHHHHHHHHHh
Confidence 99999999999999999999999999999998888777643221 121222221 25677888755543
No 8
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=99.44 E-value=3.6e-13 Score=138.00 Aligned_cols=106 Identities=17% Similarity=0.344 Sum_probs=69.8
Q ss_pred CccEEEecCCC-CCCCcccccCCCccceeEEEeEEEEEEeCCCCccc-ccCCCCCCccccccCCCCcccCCCCC-CceeE
Q 011537 173 DYRFVYMGAKG-SWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHL-VFDRNLKGCVYNIFDDVSETDFPGFK-KTLWL 249 (483)
Q Consensus 173 dyr~l~iGp~g-s~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~-Ly~~~~~s~~~di~d~~d~~~fP~~~-~a~~~ 249 (483)
...++|++|+| ++.+.|+|.++++ .+|+.|+|+|.|++|..... .+.. . + ++... ..+..
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvf--vlQ~~G~K~W~l~~~~~~~~~~~~~----~--------~---~~~~~~~~~~~ 176 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVF--VLQLEGRKRWRLYPPPDEPAPLYSD----Q--------P---FKQLEEFEPVE 176 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEE--EEEEES-EEEEEE-SCCCTTTSSCE-----------------TTTCG--STSE
T ss_pred cceEEEecCCCCCCccCEECCcccE--EEECCceeEEEECCCCcccccccCC----C--------C---ccccccCceeE
Confidence 34589999998 5789999999999 99999999999999543321 1110 0 0 11111 13457
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChHHHHHHHH
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLL 296 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~~~~~~l~ 296 (483)
+++++|||+||||+||||++.+.+.|+++++.+... +...++..+.
T Consensus 177 ~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~-t~~dl~~~~~ 222 (319)
T PF08007_consen 177 EVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAP-TWADLLESLL 222 (319)
T ss_dssp EEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCE-BHHHHHHCHH
T ss_pred EEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCC-chhhHHHHHH
Confidence 899999999999999999999999999999985554 5555444333
No 9
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.7e-11 Score=123.34 Aligned_cols=97 Identities=12% Similarity=0.185 Sum_probs=73.5
Q ss_pred EEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeC
Q 011537 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQ 255 (483)
Q Consensus 176 ~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~p 255 (483)
.|...+.|.+-.-|+|.++.+ ..|..|+|||.+-.+......++.. ......+ ....++.+++|
T Consensus 122 MIS~a~~GGgvg~H~D~YDVf--liQg~G~RRW~v~~~~~~~~~~~~~-----d~~~~~~---------f~~~~d~vlep 185 (383)
T COG2850 122 MISFAAPGGGVGPHFDQYDVF--LIQGQGRRRWRVGKKCNMSTLCPHP-----DLLILAP---------FEPDIDEVLEP 185 (383)
T ss_pred EEEEecCCCccCccccchhee--EEeecccceeecCCcccccCcCCCc-----chhhcCC---------CCchhhhhcCC
Confidence 466777788899999999999 9999999999998876655444411 1000000 11235789999
Q ss_pred CcEEEeCCCCeEEEEeCCCcEEEeeecCCCCCh
Q 011537 256 NEIIFVPSGWYHQVHNLEDTISINHNWFNGYNL 288 (483)
Q Consensus 256 GDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl 288 (483)
|||||||+||||.-+..++|...++-+..++.-
T Consensus 186 GDiLYiPp~~~H~gvae~dc~tySvG~r~Pn~~ 218 (383)
T COG2850 186 GDILYIPPGFPHYGVAEDDCMTYSVGFRAPNTR 218 (383)
T ss_pred CceeecCCCCCcCCcccccccceeeeccCCcHH
Confidence 999999999999999999988888877776433
No 10
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=5.6e-08 Score=101.63 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=63.4
Q ss_pred cEEEecCCCC-CCCcccccCCCccceeEEEeEEEEEEeCCCCcc-cccCCCCCCccccccCCCCcccCCCCCCceeEEEE
Q 011537 175 RFVYMGAKGS-WTPLHADVFRSYSWSANVCGKKKWLFLSPSQCH-LVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECT 252 (483)
Q Consensus 175 r~l~iGp~gs-~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~-~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~v 252 (483)
.++|+.|+|| +-+.|+|--..+ ..||.|||+|+|+.|.... .|+-. .+-.|+ .-|. +.+.++.+
T Consensus 319 aNvYLTPagSqGfaPHyDdIeaF--vlQvEGrK~Wrly~P~~~~eel~l~--sS~Nf~---eedl-------gePV~e~v 384 (629)
T KOG3706|consen 319 ANVYLTPAGSQGFAPHYDDIEAF--VLQVEGRKHWRLYHPTVPLEELALV--SSDNFT---EEDL-------GEPVHEFV 384 (629)
T ss_pred cceeecCCCCCCCCCchhhhhhh--hheeccceeeEeecCCCcHhhhhhc--cCCCCC---hhHh-------CCchHHhh
Confidence 4799999986 678999998888 9999999999999998753 33321 011111 1111 23567899
Q ss_pred EeCCcEEEeCCCCeEEEEeCC
Q 011537 253 QEQNEIIFVPSGWYHQVHNLE 273 (483)
Q Consensus 253 q~pGDiLFVPsGWwHqV~nle 273 (483)
++|||+||+|.|..||..+.+
T Consensus 385 le~GDllYfPRG~IHQA~t~~ 405 (629)
T KOG3706|consen 385 LEPGDLLYFPRGTIHQADTPA 405 (629)
T ss_pred cCCCcEEEecCcceeeccccc
Confidence 999999999999999977654
No 11
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=98.62 E-value=8.5e-09 Score=113.81 Aligned_cols=244 Identities=21% Similarity=0.315 Sum_probs=133.8
Q ss_pred HHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCcccccCcceeeec-HHHHHHHHH
Q 011537 20 YSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREFTDQKRVEMS-VSEFVKNWL 98 (483)
Q Consensus 20 ~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~~~~~~m~-l~efl~~~~ 98 (483)
..-|.+ +...++|||++|+.+.-.. ..|-+ +-|...+|+..+.+..|+...-.+. ..|. |.+|++-+.
T Consensus 530 ~~~FQE-hWkqGqPViVs~V~~~l~g-~lW~P-------~a~~~~~g~q~~~l~n~~~~~i~s~--d~~~~fwegFe~~~ 598 (889)
T KOG1356|consen 530 LKHFQE-HWKQGQPVIVSGVHKKLNG-LLWKP-------EALSRAFGDQVVDLSNCNNSQIISN--DCVDNFWEGFEGYS 598 (889)
T ss_pred HHHHHH-HHhcCCcEEehHhhhhccc-cccch-------HHHHHHhccchhhhhcCCCCCcccc--chhhhHHHhhcccc
Confidence 345665 6678999999998776553 47874 7888899999888888765322211 1222 445554433
Q ss_pred hccccccccccccccCCCcceeeeeccccccCCcc--------c-cccCCccccc-hhHHHhhhhccc-CCCCccccccC
Q 011537 99 ENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEY--------V-AYRTPLIFCD-DWLNMYLDHFRL-HKDPESYQKDN 167 (483)
Q Consensus 99 ~~~~~~~~~as~~~~~~~~~lYL~d~~~~~~~P~l--------~-~y~~P~~f~d-Dwln~~~d~~~~-~~~pd~~~~~~ 167 (483)
..... .....-.+-|+||.-...|.+. . ...+|.|-.. --||. ....|. +-.||+.+.
T Consensus 599 kr~~~--------~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~r~G~LNl-As~LP~~fv~PDLGPk-- 667 (889)
T KOG1356|consen 599 KRLKS--------ENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTDRDGKLNL-ASKLPEGFVRPDLGPK-- 667 (889)
T ss_pred cCccc--------ccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhcCCCccch-HhhCcccccCCCCCch--
Confidence 32211 1123445678899654443321 1 2345555421 12221 111111 112333211
Q ss_pred CccCCCccEE-EecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCccc---cc----CCC--------------CC
Q 011537 168 DICCSDYRFV-YMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHL---VF----DRN--------------LK 225 (483)
Q Consensus 168 ~i~~~dyr~l-~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~---Ly----~~~--------------~~ 225 (483)
....|... =.|-+.+.|-||.|+.+.. +.+|. +=.||...+. +. ... .+
T Consensus 668 --~y~AYG~~~e~gr~~gtTnLH~dvSDaV--NILvy-----v~e~~~~~~~~~~~~k~~~~~~~de~~~~~~~~~~e~~ 738 (889)
T KOG1356|consen 668 --LYNAYGVSTELGRGDGTTNLHLDVSDAV--NILVY-----VGEPPGQIEQIAKVLKKIQEGDLDEITRSRISSVSETP 738 (889)
T ss_pred --hhhhccccccccCCCCceeeceehhhhh--hheee-----eccCCchHHhHHHHHHhhhhcchhhhhhhhccccccCC
Confidence 11112110 1233356799999998877 65553 1112222110 00 000 01
Q ss_pred CccccccCCCC--------------------cccCC------------------CCCCceeEEEEEeCCcEEEeCCCCeE
Q 011537 226 GCVYNIFDDVS--------------------ETDFP------------------GFKKTLWLECTQEQNEIIFVPSGWYH 267 (483)
Q Consensus 226 s~~~di~d~~d--------------------~~~fP------------------~~~~a~~~e~vq~pGDiLFVPsGWwH 267 (483)
++.++|+..-| ....| +| .+.++.++|..||+||||+|-.|
T Consensus 739 GALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEy-GVe~WtfvQ~LGdAVfIPAGaPH 817 (889)
T KOG1356|consen 739 GALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEY-GVEPWTFVQFLGDAVFIPAGAPH 817 (889)
T ss_pred cchhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHh-CCCccchhhcccceEEecCCCcH
Confidence 12233321000 00111 11 35778999999999999999999
Q ss_pred EEEeCCCcEEEeeecCCCCChHHHHHHH
Q 011537 268 QVHNLEDTISINHNWFNGYNLSWVWDLL 295 (483)
Q Consensus 268 qV~nledsISIn~Nf~~~~nl~~~~~~l 295 (483)
||+|+-.+|.|+..|+++.|+...++..
T Consensus 818 QVrNLkSCikVa~DFVSPE~v~ec~rLT 845 (889)
T KOG1356|consen 818 QVRNLKSCIKVAEDFVSPEHVSECFRLT 845 (889)
T ss_pred HhhhhhhHHHHHHhhCChhhHHHHHHHH
Confidence 9999999999999999999998877754
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=96.82 E-value=0.0054 Score=59.13 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=52.5
Q ss_pred CCCCCCCcccccCCC-ccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEE
Q 011537 181 AKGSWTPLHADVFRS-YSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEII 259 (483)
Q Consensus 181 p~gs~T~lH~D~~~~-~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiL 259 (483)
+.|+...+|+.+... --|+..|.|+=+.+|+.|.- +..++.++|||++
T Consensus 88 t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G-------------------------------~~~v~~~~~Gd~i 136 (209)
T COG2140 88 TPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG-------------------------------EARVIAVRAGDVI 136 (209)
T ss_pred cCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC-------------------------------cEEEEEecCCcEE
Confidence 346666779887432 23899999999998877641 1457899999999
Q ss_pred EeCCCCeEEEEeCCCcEEEeee
Q 011537 260 FVPSGWYHQVHNLEDTISINHN 281 (483)
Q Consensus 260 FVPsGWwHqV~nledsISIn~N 281 (483)
|||++|-|.+.|.++.=-+-.+
T Consensus 137 yVPp~~gH~t~N~Gd~pLvf~~ 158 (209)
T COG2140 137 YVPPGYGHYTINTGDEPLVFLN 158 (209)
T ss_pred EeCCCcceEeecCCCCCEEEEE
Confidence 9999999999999874333333
No 13
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.48 E-value=0.0027 Score=48.42 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=25.5
Q ss_pred CCccEEEecCCCCCCCcccccCCCccceeEEEeE
Q 011537 172 SDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGK 205 (483)
Q Consensus 172 ~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~Gr 205 (483)
++.+++|||+.+|.|++|.|+++.. +..+.|.
T Consensus 25 ~~~~~~~~G~~~s~t~~H~d~~~~~--n~~~~~~ 56 (57)
T smart00558 25 PDVPYLYMGMAGSVTPWHIDDYDLV--NYLHQGA 56 (57)
T ss_pred CCcceEEEeCCCCccceeEcCCCeE--EEEEecC
Confidence 4447999999999999999999974 5555553
No 14
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=96.40 E-value=0.011 Score=53.58 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=53.3
Q ss_pred EEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEE--EEe
Q 011537 177 VYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLEC--TQE 254 (483)
Q Consensus 177 l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~--vq~ 254 (483)
+.|.| |+....|+. ++..|..++.|+=+..++.|.... .+.+...- .++
T Consensus 39 ~~i~p-g~~~~Ph~h--~a~~i~~V~~G~~~~~~v~~~~~~--------------------------~~~~~~~~~v~l~ 89 (144)
T PF00190_consen 39 VLIEP-GGLRAPHYH--NADEIVYVIEGRGRVGVVGPGGPQ--------------------------EEFRDFSQKVRLK 89 (144)
T ss_dssp EEEET-TEEEEEEEE--SSEEEEEEEESEEEEEEEETTCSS--------------------------SEEEEEEEEEEEE
T ss_pred eehhc-CCccceeEe--eeeEEeeeeccceEEEEEecCCcc--------------------------ccceeeeceeeee
Confidence 34455 556778887 566779999999887777665421 01111222 599
Q ss_pred CCcEEEeCCCCeEEEEeC--CCcEEEeeecCCC
Q 011537 255 QNEIIFVPSGWYHQVHNL--EDTISINHNWFNG 285 (483)
Q Consensus 255 pGDiLFVPsGWwHqV~nl--edsISIn~Nf~~~ 285 (483)
+||+++||+||.|.+.|. ++.+.+.....+.
T Consensus 90 ~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~ 122 (144)
T PF00190_consen 90 AGDVFVVPAGHPHWIINDGDDEALVLIIFDTNN 122 (144)
T ss_dssp TTEEEEE-TT-EEEEEECSSSSEEEEEEEEESS
T ss_pred cccceeeccceeEEEEcCCCCCCEEEEEEECCC
Confidence 999999999999999999 4566666544443
No 15
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.09 E-value=0.0031 Score=64.30 Aligned_cols=92 Identities=12% Similarity=0.177 Sum_probs=69.0
Q ss_pred cCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCC----CCCccccccCCCCcccCCCCCC--ceeEEEEE
Q 011537 180 GAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRN----LKGCVYNIFDDVSETDFPGFKK--TLWLECTQ 253 (483)
Q Consensus 180 Gp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~----~~s~~~di~d~~d~~~fP~~~~--a~~~e~vq 253 (483)
+.....|..|.|-..+. .+++.|.||-++++|.+...+..+. .+....|+ ..||...+|.+.. +....++-
T Consensus 181 pvEvg~~y~~~~w~q~l--~t~~~g~~R~~~~~p~~~~YlAqh~lfdqi~elk~Di-~iPDyc~~~~f~~~~v~~~~w~G 257 (355)
T KOG2132|consen 181 PVEVGSTYADEDWSQNL--MTQIKGIKRCILFEPRECLYLAQHHLFDQIPELKFDI-SIPDYCSFPNFENEVVDINAWIG 257 (355)
T ss_pred eeecccccchhHHHhhh--HHHhhhhhhhhcCCccccchhhhhhhhccchhhhhcc-CCCceeecCCCCccccceeEEec
Confidence 33444688999999999 9999999999999999332221111 12333443 4578889999877 67777888
Q ss_pred eCCcEEEeCCCCeEEEEeCCC
Q 011537 254 EQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 254 ~pGDiLFVPsGWwHqV~nled 274 (483)
.+|+++++|..|||.+....-
T Consensus 258 paGtV~pih~dp~hNi~~qv~ 278 (355)
T KOG2132|consen 258 PAGTVLPIHMDPWHNILSQVF 278 (355)
T ss_pred cCCceeccccccccceeeeee
Confidence 889999999999999988754
No 16
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=95.91 E-value=0.055 Score=56.98 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=47.8
Q ss_pred EEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCC
Q 011537 177 VYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQN 256 (483)
Q Consensus 177 l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pG 256 (483)
+-+.| |..+++|+.+. +--|...+.|+=+..++.+.. ...+..++||
T Consensus 250 ~~l~P-G~~~~~H~H~~-~~E~~yvl~G~~~~~v~d~~g-------------------------------~~~~~~l~~G 296 (367)
T TIGR03404 250 VTVEP-GAMRELHWHPN-ADEWQYFIQGQARMTVFAAGG-------------------------------NARTFDYQAG 296 (367)
T ss_pred EEECC-CCccCCeeCcC-CCeEEEEEEEEEEEEEEecCC-------------------------------cEEEEEECCC
Confidence 34444 55678898664 345788999988877765431 1224679999
Q ss_pred cEEEeCCCCeEEEEeCCC
Q 011537 257 EIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 257 DiLFVPsGWwHqV~nled 274 (483)
|++|||.|..|.++|.++
T Consensus 297 D~~~iP~g~~H~i~N~G~ 314 (367)
T TIGR03404 297 DVGYVPRNMGHYVENTGD 314 (367)
T ss_pred CEEEECCCCeEEEEECCC
Confidence 999999999999999975
No 17
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=95.21 E-value=0.027 Score=53.53 Aligned_cols=39 Identities=15% Similarity=0.421 Sum_probs=27.8
Q ss_pred eeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCC
Q 011537 247 LWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNG 285 (483)
Q Consensus 247 ~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~ 285 (483)
..+-+..+|||+++||++|.|.+.|.++..=+..||+++
T Consensus 108 ~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp -EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred eEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEec
Confidence 356789999999999999999999998866666666664
No 18
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=93.96 E-value=0.084 Score=41.04 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=42.3
Q ss_pred CCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEEEeC
Q 011537 183 GSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVP 262 (483)
Q Consensus 183 gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLFVP 262 (483)
|+.++.|.+.... -+...+.|+-...+ . .-...++|||++++|
T Consensus 8 G~~~~~h~H~~~~-e~~~vl~G~~~~~~-~-----------------------------------~~~~~l~~Gd~~~i~ 50 (71)
T PF07883_consen 8 GGSIPPHRHPGED-EFFYVLSGEGTLTV-D-----------------------------------GERVELKPGDAIYIP 50 (71)
T ss_dssp TEEEEEEEESSEE-EEEEEEESEEEEEE-T-----------------------------------TEEEEEETTEEEEEE
T ss_pred CCCCCCEECCCCC-EEEEEEECCEEEEE-c-----------------------------------cEEeEccCCEEEEEC
Confidence 4467888865441 45888888876552 1 015799999999999
Q ss_pred CCCeEEEEeCCCc
Q 011537 263 SGWYHQVHNLEDT 275 (483)
Q Consensus 263 sGWwHqV~nleds 275 (483)
++=+|++.|..+.
T Consensus 51 ~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 51 PGVPHQVRNPGDE 63 (71)
T ss_dssp TTSEEEEEEESSS
T ss_pred CCCeEEEEECCCC
Confidence 9999999999764
No 19
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.75 E-value=0.015 Score=59.99 Aligned_cols=92 Identities=23% Similarity=0.379 Sum_probs=69.9
Q ss_pred HHHhhhCCceEEEEeCCcccccCcceeeecHHHHHHHHHhccccccccccccccCCCcceeeeeccccccCCccccccCC
Q 011537 60 FFSTHFGKSKVQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAYRTP 139 (483)
Q Consensus 60 yL~~~~Gd~~V~V~d~~~~~f~~~~~~~m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~~~~~P~l~~y~~P 139 (483)
|.+...-+..++|..|+...|.+..+.++++.+|+..|.+..+ .+...+|++||++.++.+.+..+..|
T Consensus 89 f~k~~v~~~~~~v~~~~~s~f~~~~~Le~ny~d~~v~~a~~~e-----------~e~~~l~lad~~~~e~~~~~~~~q~p 157 (427)
T KOG2131|consen 89 FAKRIVQNGDKNVFLCDLSLFPDYEYLERNYGDFVVPVANCNE-----------KERYSLKLADWEFREEQVQLACPQAP 157 (427)
T ss_pred HhHHHHhcCCccccccccccCccHHHHHhhhhhcchhhccccc-----------hhhhhhhhccchhHHHhHhhhcCCCc
Confidence 4444444555566788877888888999999999999987543 35566999999999999999889999
Q ss_pred ccccchh-HHHhhhhcccCCCCcc
Q 011537 140 LIFCDDW-LNMYLDHFRLHKDPES 162 (483)
Q Consensus 140 ~~f~dDw-ln~~~d~~~~~~~pd~ 162 (483)
..+..|| +..+++..-.+..|++
T Consensus 158 ~ly~kDwHL~~~~d~~~~~~~pd~ 181 (427)
T KOG2131|consen 158 SLYGKDWHLYRFLDNDFPYWTPDL 181 (427)
T ss_pred cccccchheeeecCcccccccchh
Confidence 9888899 7777665444444443
No 20
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=93.60 E-value=0.36 Score=44.95 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=56.6
Q ss_pred CccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEE
Q 011537 173 DYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECT 252 (483)
Q Consensus 173 dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~v 252 (483)
++.-+.+|+.+..+.+|.+. +--|+.|+.|.=...+...+ ..-.+.
T Consensus 28 ~~~v~~vgGpn~R~d~H~~~--tdE~FyqleG~~~l~v~d~g--------------------------------~~~~v~ 73 (159)
T TIGR03037 28 EFMVTVVGGPNARTDFHDDP--GEEFFYQLKGEMYLKVTEEG--------------------------------KREDVP 73 (159)
T ss_pred cEEEEEeCCCCCCcccccCC--CceEEEEEcceEEEEEEcCC--------------------------------cEEEEE
Confidence 34446678888889999976 45559999998665543211 123689
Q ss_pred EeCCcEEEeCCCCeEEEEeCCCcEEEeee
Q 011537 253 QEQNEIIFVPSGWYHQVHNLEDTISINHN 281 (483)
Q Consensus 253 q~pGDiLFVPsGWwHqV~nledsISIn~N 281 (483)
+++||+++||+|=-|.....++|+.+-..
T Consensus 74 L~eGd~flvP~gvpHsP~r~~~t~~LvIE 102 (159)
T TIGR03037 74 IREGDIFLLPPHVPHSPQRPAGSIGLVIE 102 (159)
T ss_pred ECCCCEEEeCCCCCcccccCCCcEEEEEE
Confidence 99999999999999999988888877653
No 21
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=93.44 E-value=0.24 Score=51.47 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=33.3
Q ss_pred EEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChHHHHH
Q 011537 249 LECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWD 293 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~~~~~ 293 (483)
-.+..++||++.+|+++||+-.|.++...| |++..+++.+..
T Consensus 120 ~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~---wld~lD~Pl~~~ 161 (335)
T TIGR02272 120 ERTTMHPGDFIITPSWTWHDHGNPGDEPMI---WLDGLDIPLVQL 161 (335)
T ss_pred EEEeeeCCCEEEeCCCeeEecccCCCCcEE---EEecCCHHHHHh
Confidence 468999999999999999999998876644 555566765544
No 22
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=93.13 E-value=0.15 Score=48.95 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.8
Q ss_pred eEEEEEeCCcEEEeCCCCeEEEEeCCCc
Q 011537 248 WLECTQEQNEIIFVPSGWYHQVHNLEDT 275 (483)
Q Consensus 248 ~~e~vq~pGDiLFVPsGWwHqV~nleds 275 (483)
...+.++|||+++||+||-|.+.|.++.
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 4568999999999999999999998763
No 23
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=92.99 E-value=0.39 Score=45.46 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=56.8
Q ss_pred CccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEE
Q 011537 173 DYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECT 252 (483)
Q Consensus 173 dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~v 252 (483)
++.-..+|.+|..+.+|.|...-. +.|+.|.=+..+...+ +...+.
T Consensus 34 d~~VmvvgGpn~r~d~H~~~tdE~--FyqleG~~~l~v~d~g--------------------------------~~~~v~ 79 (177)
T PRK13264 34 DFIVMVVGGPNARTDFHYDPGEEF--FYQLEGDMYLKVQEDG--------------------------------KRRDVP 79 (177)
T ss_pred CEEEEEEccCCcccccccCCCceE--EEEECCeEEEEEEcCC--------------------------------ceeeEE
Confidence 444456788888899999876555 9999998665543311 123689
Q ss_pred EeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 253 QEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 253 q~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
+++||+++||+|=-|.....++|+.+-+
T Consensus 80 L~eGd~fllP~gvpHsP~r~~~tv~Lvi 107 (177)
T PRK13264 80 IREGEMFLLPPHVPHSPQREAGSIGLVI 107 (177)
T ss_pred ECCCCEEEeCCCCCcCCccCCCeEEEEE
Confidence 9999999999999999988888888766
No 24
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=92.96 E-value=0.066 Score=59.37 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=82.2
Q ss_pred CCccEEEecCCCCCCCcccccCCCccceeEEEeE-EEEEEeCCCCccccc-------CCCCCCccccccCCCCcccCCCC
Q 011537 172 SDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGK-KKWLFLSPSQCHLVF-------DRNLKGCVYNIFDDVSETDFPGF 243 (483)
Q Consensus 172 ~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~Gr-KrW~LfPP~~~~~Ly-------~~~~~s~~~di~d~~d~~~fP~~ 243 (483)
..-+.||.|-=.|.-+||.+-.+-+|-+..--|. |.|+.+||.....+. +....++.- +...-..---|.+
T Consensus 172 vNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~a-FLRHK~~LiSP~~ 250 (690)
T KOG0958|consen 172 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPA-FLRHKMTLISPSV 250 (690)
T ss_pred cCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHH-HHhhcccccCHHH
Confidence 3445799999888899999999988778888887 999999999876432 211111110 0000000001211
Q ss_pred ---CCceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChH
Q 011537 244 ---KKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLS 289 (483)
Q Consensus 244 ---~~a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~ 289 (483)
.+.+...++|++||.|.-=++-||.--|++..++=+.||....-+.
T Consensus 251 LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~ 299 (690)
T KOG0958|consen 251 LKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWID 299 (690)
T ss_pred HHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhh
Confidence 1346778999999999998999999999999999889998876554
No 25
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.03 E-value=1.1 Score=39.81 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=43.0
Q ss_pred EEEecCCCC-CCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEe
Q 011537 176 FVYMGAKGS-WTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQE 254 (483)
Q Consensus 176 ~l~iGp~gs-~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~ 254 (483)
.+.+-|.+. ....|.+ .+-+ ...+.|+=.+.+= .-++.++
T Consensus 40 ~~~v~pg~~~~~~~H~~-~dE~--~~Vl~G~g~v~~~------------------------------------~~~~~v~ 80 (127)
T COG0662 40 RILVKPGEEISLHHHHH-RDEH--WYVLEGTGKVTIG------------------------------------GEEVEVK 80 (127)
T ss_pred EEEECCCcccCcccccC-cceE--EEEEeeEEEEEEC------------------------------------CEEEEec
Confidence 456666555 3455555 4455 6777887555430 1268999
Q ss_pred CCcEEEeCCCCeEEEEeCCC
Q 011537 255 QNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 255 pGDiLFVPsGWwHqV~nled 274 (483)
+||++|||+|=.|.+.|.+.
T Consensus 81 ~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 81 AGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred CCCEEEECCCCcEEEEcCCC
Confidence 99999999999999999986
No 26
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=90.26 E-value=1.7 Score=40.09 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEE
Q 011537 172 SDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLEC 251 (483)
Q Consensus 172 ~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~ 251 (483)
.++.-+++|++++.|.+|+|...-+ ..|+.|.=...+... ...-.+
T Consensus 32 ~~f~VmvVGGPN~R~DyHine~eE~--FyQ~kG~m~Lkv~e~--------------------------------g~~kdi 77 (151)
T PF06052_consen 32 DDFIVMVVGGPNQRTDYHINETEEF--FYQLKGDMCLKVVED--------------------------------GKFKDI 77 (151)
T ss_dssp SSEEEEEEESSB--SSEEE-SS-EE--EEEEES-EEEEEEET--------------------------------TEEEEE
T ss_pred CCeEEEEEcCCCCCCccccCCcceE--EEEEeCcEEEEEEeC--------------------------------CceEEE
Confidence 3555578999999999999986665 999999755444332 123378
Q ss_pred EEeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 252 TQEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 252 vq~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
.+++||+.++|++--|.-.-.++||.+=.
T Consensus 78 ~I~EGe~fLLP~~vpHsP~R~~~tiGLVi 106 (151)
T PF06052_consen 78 PIREGEMFLLPANVPHSPQRPADTIGLVI 106 (151)
T ss_dssp EE-TTEEEEE-TT--EEEEE-TT-EEEEE
T ss_pred EeCCCcEEecCCCCCCCCcCCCCcEEEEE
Confidence 99999999999999999988889888754
No 27
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=90.01 E-value=1.7 Score=38.41 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=49.7
Q ss_pred EEecCCCCCCCccccc-CCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeC
Q 011537 177 VYMGAKGSWTPLHADV-FRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQ 255 (483)
Q Consensus 177 l~iGp~gs~T~lH~D~-~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~p 255 (483)
.+-..+|..++.|..+ .... ..++.|+=++.+= .-..++++
T Consensus 47 ~v~~~~G~~~~~H~hp~~~~~--~~Vl~G~~~~~~~------------------------------------g~~~~l~~ 88 (131)
T COG1917 47 LVTFEPGAVIPWHTHPLGEQT--IYVLEGEGTVQLE------------------------------------GEKKELKA 88 (131)
T ss_pred EEEECCCcccccccCCCcceE--EEEEecEEEEEec------------------------------------CCceEecC
Confidence 4566778899999988 3345 7778887665531 01358999
Q ss_pred CcEEEeCCCCeEEEEeCCCc--EEEee
Q 011537 256 NEIIFVPSGWYHQVHNLEDT--ISINH 280 (483)
Q Consensus 256 GDiLFVPsGWwHqV~nleds--ISIn~ 280 (483)
||++++|+|=.|.+.+.+++ +-|..
T Consensus 89 Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 89 GDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred CCEEEECCCCeeeeccCCCCceeEEEE
Confidence 99999999999999999987 54444
No 28
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=89.57 E-value=1.7 Score=39.32 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=43.8
Q ss_pred EEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCC
Q 011537 177 VYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQN 256 (483)
Q Consensus 177 l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pG 256 (483)
+-+.| |+..+.|+.+.. .-+..++.|+=...+.-+.. ....+..+++|
T Consensus 35 ~~i~p-g~~~~~h~H~~~-~e~~~Vl~G~~~~~~~~~~~------------------------------~~~~~~~l~~G 82 (146)
T smart00835 35 VNLEP-GGMLPPHYHPRA-TELLYVVRGEGRVGVVDPNG------------------------------NKVYDARLREG 82 (146)
T ss_pred EEecC-CcCcCCeeCCCC-CEEEEEEeCeEEEEEEeCCC------------------------------CeEEEEEecCC
Confidence 44555 445677875422 23477788875554422210 12357899999
Q ss_pred cEEEeCCCCeEEEEeCCC
Q 011537 257 EIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 257 DiLFVPsGWwHqV~nled 274 (483)
|+++||+|..|...|.++
T Consensus 83 D~~~ip~g~~H~~~n~~~ 100 (146)
T smart00835 83 DVFVVPQGHPHFQVNSGD 100 (146)
T ss_pred CEEEECCCCEEEEEcCCC
Confidence 999999999999999864
No 29
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=87.82 E-value=2.5 Score=44.57 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=46.9
Q ss_pred EEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCC
Q 011537 177 VYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQN 256 (483)
Q Consensus 177 l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pG 256 (483)
+-+.| |...++|+.. +.-|..++.|+=+..+.... .+.+...+++|
T Consensus 72 ~~l~p-G~~~~~HwH~--~~E~~yVl~G~~~v~~~d~~-------------------------------g~~~~~~L~~G 117 (367)
T TIGR03404 72 MRLEP-GAIRELHWHK--EAEWAYVLYGSCRITAVDEN-------------------------------GRNYIDDVGAG 117 (367)
T ss_pred EEEcC-CCCCCcccCC--CceEEEEEeeEEEEEEEcCC-------------------------------CcEEEeEECCC
Confidence 45555 4456788874 34579999999887765421 11233479999
Q ss_pred cEEEeCCCCeEEEEeCCCc
Q 011537 257 EIIFVPSGWYHQVHNLEDT 275 (483)
Q Consensus 257 DiLFVPsGWwHqV~nleds 275 (483)
|++|+|+|..|...|.++.
T Consensus 118 D~~~fP~g~~H~~~n~~~~ 136 (367)
T TIGR03404 118 DLWYFPPGIPHSLQGLDEG 136 (367)
T ss_pred CEEEECCCCeEEEEECCCC
Confidence 9999999999999998654
No 30
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=87.04 E-value=2 Score=40.42 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=44.0
Q ss_pred CCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEEE
Q 011537 181 AKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIF 260 (483)
Q Consensus 181 p~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLF 260 (483)
++|..|+.| |+.++..|..++.|.=+=..|-.... ...|. ........+.+|.+.+
T Consensus 83 ~pGq~S~IH-DH~~s~g~~~vl~G~l~e~~y~~~~~---------------------~~~~~--~~~~~~~~~~~g~~~~ 138 (175)
T PF05995_consen 83 PPGQRSPIH-DHGGSWGWVKVLSGELEETRYRRPDD---------------------GGAPL--ELVGRERLLPGGVTYI 138 (175)
T ss_dssp -TT-B--EE-E-TTSEEEEEEEESEEEEEEEEESTS---------------------SS-EE--EECEEEEEETTTEEEE
T ss_pred CCCCcCCCC-CCCCceEEEEEecceEEEEEeccCCc---------------------ccCcc--cccCceEecCCCeEEe
Confidence 568899999 77778888999999844333322211 00000 0112345677888888
Q ss_pred eCCCCeEEEEeCC-C--cEEEee
Q 011537 261 VPSGWYHQVHNLE-D--TISINH 280 (483)
Q Consensus 261 VPsGWwHqV~nle-d--sISIn~ 280 (483)
.|.+..|+|.|.. + +||+..
T Consensus 139 ~~~~~iH~v~n~s~~~~avSLHv 161 (175)
T PF05995_consen 139 FDPHGIHRVENPSGDEPAVSLHV 161 (175)
T ss_dssp BTTTBEEEEEES-SSS-EEEEEE
T ss_pred cCCCCeEEeccCCCCCCEEEEEE
Confidence 8999999998875 4 555544
No 31
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=86.88 E-value=3.6 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=25.5
Q ss_pred EEEEEeCCcEEEeCCCCeEEEEeCC---CcEEEeeec
Q 011537 249 LECTQEQNEIIFVPSGWYHQVHNLE---DTISINHNW 282 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHqV~nle---dsISIn~Nf 282 (483)
+.+.-++|++|+.|+.-+|.|..-. +-|||++|+
T Consensus 162 ~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl 198 (201)
T TIGR02466 162 VYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFNY 198 (201)
T ss_pred EEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEee
Confidence 3455699999999999999998764 345555543
No 32
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=86.62 E-value=2.2 Score=38.30 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=37.5
Q ss_pred cCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCC-cE
Q 011537 180 GAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQN-EI 258 (483)
Q Consensus 180 Gp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pG-Di 258 (483)
-+.|..-.+|+... ..-|.+.++|+=+..+..... .-+++|... ..
T Consensus 40 ~~~~~~RG~H~Hk~-~~~~~~~l~Gs~~v~~~d~~~--------------------------------~~~~~L~~~~~~ 86 (131)
T PF05523_consen 40 VPPGVIRGWHAHKK-TTQWFIVLSGSFKVVLDDGRE--------------------------------EEEFILDEPNKG 86 (131)
T ss_dssp --SS--EEEEEESS---EEEEEEES-EEEEEE-SS---------------------------------EEEEEE--TTEE
T ss_pred CCCCCccccccccc-ccEEEEEEeCEEEEEEecCCC--------------------------------cEEEEECCCCeE
Confidence 44555567888754 445789999998877432211 134555544 48
Q ss_pred EEeCCCCeEEEEeCCCcEEEeeecCCC
Q 011537 259 IFVPSGWYHQVHNLEDTISINHNWFNG 285 (483)
Q Consensus 259 LFVPsGWwHqV~nledsISIn~Nf~~~ 285 (483)
|+||+|+||...++++. ||-..|.+.
T Consensus 87 L~Ippg~w~~~~~~s~~-svlLv~as~ 112 (131)
T PF05523_consen 87 LYIPPGVWHGIKNFSED-SVLLVLASE 112 (131)
T ss_dssp EEE-TT-EEEEE---TT--EEEEEESS
T ss_pred EEECCchhhHhhccCCC-cEEEEEcCC
Confidence 99999999999999775 555555553
No 33
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=85.00 E-value=1.8 Score=40.07 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.6
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
+..+.+||.+|||.|-.|++.|.+.
T Consensus 103 ~~~~~~g~sv~Ip~g~~H~i~n~g~ 127 (151)
T PF01050_consen 103 EFTLKEGDSVYIPRGAKHRIENPGK 127 (151)
T ss_pred EEEEcCCCEEEECCCCEEEEECCCC
Confidence 4689999999999999999999864
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=83.05 E-value=0.9 Score=40.27 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=23.1
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
.++..|||.+|||+|=-||-.|+.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5799999999999999999999965
No 35
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=82.42 E-value=4.8 Score=37.21 Aligned_cols=65 Identities=25% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEEE
Q 011537 181 AKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIF 260 (483)
Q Consensus 181 p~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLF 260 (483)
.+|+.||.|...+.-. .+++.|+=.-.|.... .+|| ..+.++...|++++.
T Consensus 52 APG~~TPiHRHsCEEV--FvVLkG~GTl~l~~~~-----------------------~~~p----G~pqef~~~pnSTf~ 102 (167)
T PF02041_consen 52 APGSATPIHRHSCEEV--FVVLKGSGTLYLASSH-----------------------EKYP----GKPQEFPIFPNSTFH 102 (167)
T ss_dssp -TT-B--EEEESS-EE--EEEEE--EEEEE--SS-----------------------SSS------S-EEEEE-TTEEEE
T ss_pred cCCCCCCCccccccEE--EEEEecceEEEEeccc-----------------------ccCC----CCceEEEecCCCeEE
Confidence 4588999999999998 9999999887765211 1333 246788999999999
Q ss_pred eCCCCeEEEEeCCC
Q 011537 261 VPSGWYHQVHNLED 274 (483)
Q Consensus 261 VPsGWwHqV~nled 274 (483)
||.+--|||.|-++
T Consensus 103 IPvn~~HQv~NT~e 116 (167)
T PF02041_consen 103 IPVNDAHQVWNTNE 116 (167)
T ss_dssp E-TT--EEEE---S
T ss_pred eCCCCcceeecCCC
Confidence 99999999999863
No 36
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=80.73 E-value=6.4 Score=33.25 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceeEEEEEeCCcEEEeCCCCeEEEEeCC---CcEEEeee
Q 011537 246 TLWLECTQEQNEIIFVPSGWYHQVHNLE---DTISINHN 281 (483)
Q Consensus 246 a~~~e~vq~pGDiLFVPsGWwHqV~nle---dsISIn~N 281 (483)
...+.+..++|++|+.|+.-+|.|..-. +-|||++|
T Consensus 63 ~~~~~~~p~~G~lvlFPs~l~H~v~p~~~~~~RisisfN 101 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSWLWHGVPPNNSDEERISISFN 101 (101)
T ss_dssp -SEEEE---TTEEEEEETTSEEEE----SSS-EEEEEEE
T ss_pred CceEEeCCCCCEEEEeCCCCEEeccCcCCCCCEEEEEcC
Confidence 3467789999999999999999998764 35676665
No 37
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=80.72 E-value=2.7 Score=37.52 Aligned_cols=31 Identities=10% Similarity=-0.080 Sum_probs=26.5
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
+..++|||++|+|++=.|+..|.++...|..
T Consensus 76 ~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 76 VHPIRPGTMYALDKHDRHYLRAGEDMRLVCV 106 (125)
T ss_pred EEEeCCCeEEEECCCCcEEEEcCCCEEEEEE
Confidence 5799999999999999999999977555544
No 38
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=77.83 E-value=13 Score=35.29 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=48.4
Q ss_pred EEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeC
Q 011537 176 FVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQ 255 (483)
Q Consensus 176 ~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~p 255 (483)
++.++.+|+.-.+|+..-.-.-..+.|.|+=.-+++... +.-|.|. ++..+++.+
T Consensus 48 n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR-----------------------~~SpTyg--~~~~~~ls~ 102 (173)
T COG1898 48 NHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLR-----------------------KDSPTYG--KWVGVVLSA 102 (173)
T ss_pred eEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEEEEcc-----------------------CCCCCcc--eEEEEEecC
Confidence 466777888888998764411112333333222222111 1223332 455666766
Q ss_pred C--cEEEeCCCCeEEEEeCCCcEEEee
Q 011537 256 N--EIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 256 G--DiLFVPsGWwHqV~nledsISIn~ 280 (483)
- .+|+||+|+.|-..+|+++..+.+
T Consensus 103 ~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 103 ENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCceEEEeCCcccceeEEccCceEEEE
Confidence 5 899999999999999999875554
No 39
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=76.79 E-value=8.8 Score=36.37 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=25.2
Q ss_pred eeEEEEEeC--CcEEEeCCCCeEEEEeCCCcEEEe
Q 011537 247 LWLECTQEQ--NEIIFVPSGWYHQVHNLEDTISIN 279 (483)
Q Consensus 247 ~~~e~vq~p--GDiLFVPsGWwHqV~nledsISIn 279 (483)
++..++|.+ +-+||||+|.+|...++++...+.
T Consensus 94 ~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~ 128 (176)
T TIGR01221 94 KWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFL 128 (176)
T ss_pred eEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEE
Confidence 345566666 679999999999999998864333
No 40
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=72.68 E-value=34 Score=28.36 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEEEeCCCCeEEEEeCC
Q 011537 194 RSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLE 273 (483)
Q Consensus 194 ~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLFVPsGWwHqV~nle 273 (483)
++.+...+++|+=+++.+.+... ...-++...+|+.-+||+.-||.|..++
T Consensus 24 GtWg~l~Vl~G~L~f~~~~~~~~-----------------------------~~~~~~~~~~~~~~~i~Pq~wH~V~p~s 74 (82)
T PF09313_consen 24 GTWGKLRVLEGELKFYGLDEEGE-----------------------------EPEEEVFIPAGQPPVIEPQQWHRVEPLS 74 (82)
T ss_dssp TEEEEEEEEESEEEEEEESSTT------------------------------SESEEEEEETTEEEEE-TT-EEEEEESS
T ss_pred CeEEEEEEEeeEEEEEEECCCCC-----------------------------ceeEEEEeCCCCCceeCCCceEEEEECC
Confidence 34455788999999998876432 1124789999999999999999999998
Q ss_pred CcEEEe
Q 011537 274 DTISIN 279 (483)
Q Consensus 274 dsISIn 279 (483)
+-+.+.
T Consensus 75 ~D~~f~ 80 (82)
T PF09313_consen 75 DDLRFQ 80 (82)
T ss_dssp TT-EEE
T ss_pred CCEEEE
Confidence 866554
No 41
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=72.01 E-value=2.8 Score=33.74 Aligned_cols=16 Identities=31% Similarity=0.862 Sum_probs=14.0
Q ss_pred EEEEeCCcEEEeCCCC
Q 011537 250 ECTQEQNEIIFVPSGW 265 (483)
Q Consensus 250 e~vq~pGDiLFVPsGW 265 (483)
...++|||++++|.||
T Consensus 45 ~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGW 60 (74)
T ss_dssp EEEEETTEEEEE-TTE
T ss_pred EEEEcCCcEEEECCCC
Confidence 5799999999999999
No 42
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=71.35 E-value=21 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=26.1
Q ss_pred eeEEEEEeCCc--EEEeCCCCeEEEEeCCCcEEEee
Q 011537 247 LWLECTQEQNE--IIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 247 ~~~e~vq~pGD--iLFVPsGWwHqV~nledsISIn~ 280 (483)
++..++|.+++ .||||+|.+|...++++.-.|.+
T Consensus 94 ~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 94 KWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp -EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 46678887776 79999999999999998644544
No 43
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=71.24 E-value=5.4 Score=37.35 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=24.6
Q ss_pred ceeEEEEEeCCcEEEeCCCCeEEEEeCC
Q 011537 246 TLWLECTQEQNEIIFVPSGWYHQVHNLE 273 (483)
Q Consensus 246 a~~~e~vq~pGDiLFVPsGWwHqV~nle 273 (483)
..|+.|-++.||.|++|+|-+|.....+
T Consensus 113 d~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 113 DQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred CCEEEEEEecCCEEEecCcceeeeecCc
Confidence 4689999999999999999999977543
No 44
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=70.81 E-value=6.7 Score=36.86 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=25.5
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
+..+++||++++|++=.|...|.++.-+.-.
T Consensus 147 ~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l 177 (185)
T PRK09943 147 DYHLVAGQSYAINTGIPHSFSNTSAGICRII 177 (185)
T ss_pred EEEecCCCEEEEcCCCCeeeeCCCCCCeEEE
Confidence 5689999999999999999999876433333
No 45
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=70.76 E-value=13 Score=40.33 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.8
Q ss_pred EEEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 249 LECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
-+..++|||.+|+|+|=-|+..|.++
T Consensus 415 ~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 415 ETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 36799999999999999999999875
No 46
>PLN00212 glutelin; Provisional
Probab=70.18 E-value=27 Score=38.43 Aligned_cols=73 Identities=8% Similarity=-0.011 Sum_probs=50.4
Q ss_pred CCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEEEe
Q 011537 182 KGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFV 261 (483)
Q Consensus 182 ~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLFV 261 (483)
+|+..+.|+.+.. ..-..++.|+=+.-++.+. .-+.+...|++||++.|
T Consensus 357 ~gam~~PHwn~nA-~eI~yV~rG~g~vqvV~~~------------------------------g~~vf~~~L~~GdvfVV 405 (493)
T PLN00212 357 QNALLSPFWNVNA-HSVVYITQGRARVQVVSNN------------------------------GKTVFNGVLRPGQLLII 405 (493)
T ss_pred CCcccCCeecCCC-CEEEEEeecceEEEEEcCC------------------------------CCEEEEEEEcCCCEEEE
Confidence 3566777887753 3346677777776665432 01346679999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeecCCC
Q 011537 262 PSGWYHQVHNLEDTISINHNWFNG 285 (483)
Q Consensus 262 PsGWwHqV~nledsISIn~Nf~~~ 285 (483)
|.|+.|....-.+..-++....++
T Consensus 406 Pqg~~v~~~A~~egfe~v~F~tna 429 (493)
T PLN00212 406 PQHYAVLKKAEREGCQYIAFKTNA 429 (493)
T ss_pred CCCCeEEEeecCCceEEEEeecCC
Confidence 999999988877766666544444
No 47
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=69.36 E-value=5.3 Score=40.08 Aligned_cols=25 Identities=8% Similarity=-0.081 Sum_probs=23.3
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
...+++||++|||++--|+..|.++
T Consensus 219 ~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 219 WVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEEecCCCEEEECCCCCEEEEecCC
Confidence 6789999999999999999999975
No 48
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.78 E-value=8.4 Score=40.78 Aligned_cols=68 Identities=18% Similarity=0.328 Sum_probs=61.1
Q ss_pred eEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 011537 248 WLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLLRDYNEAKEYIEDIRDICDDFEG 318 (483)
Q Consensus 248 ~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~~~~~~l~~~l~~~~~~~~d~~~~~~~f~~ 318 (483)
-+.+.+.-|..-|+|. |-|++-+-++-+.-||+..|..+..-..+...+..+++-+.++.+.+.+|+.
T Consensus 44 s~~Imvpig~~a~mpG---~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~~~~~n~~~ 111 (514)
T KOG3130|consen 44 SYNIMVPIGPFAFMPG---KLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHRKEHVRKQIDDLKKVMKNFES 111 (514)
T ss_pred ccceeeeccccccccc---ceeeechhhhhhccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4578888999999998 9999999999999999999999999999999999999999999888776654
No 49
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=68.33 E-value=2.7 Score=48.47 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCCCCCCcccccCCCccceeEEEeEE-----E-EEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEe
Q 011537 181 AKGSWTPLHADVFRSYSWSANVCGKK-----K-WLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQE 254 (483)
Q Consensus 181 p~gs~T~lH~D~~~~~sW~~qV~GrK-----r-W~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~ 254 (483)
.++..|.+|.|.-.+.+-+-++.|.| . |+-.+..+...-+........+. ...............++
T Consensus 481 ~~~~~tdf~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 553 (776)
T KOG1633|consen 481 MKGRYTDFHVDFSGTSVYLEGIKGEKPSGKEIFALPSPTETNEASRQATESKKDFS-------RVRGDSANCDDKRDVLK 553 (776)
T ss_pred cccccceeEeccCCcccccccccccccccchhhcccccCcccchhhhhhhccccch-------hcccccccCCCcccccc
Confidence 46788999999988876678888887 3 44333333322221110000000 01111122234567999
Q ss_pred CCcEEEeCCCCeEEEEeCCCcEEEeeecCCC
Q 011537 255 QNEIIFVPSGWYHQVHNLEDTISINHNWFNG 285 (483)
Q Consensus 255 pGDiLFVPsGWwHqV~nledsISIn~Nf~~~ 285 (483)
+|+..++|+||.|+|...-+.++...|++..
T Consensus 554 ~g~~~~~P~~~i~~~~~p~~~~~~~~~~~~h 584 (776)
T KOG1633|consen 554 EGETGLIPAGPIHAVLTPVDSLSFGGNFLTH 584 (776)
T ss_pred CCCcccCCCCccccccccccccccccchhhh
Confidence 9999999999999999998999998888854
No 50
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=67.26 E-value=8 Score=36.01 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=23.3
Q ss_pred ceeEEEEEeCCcEEEeCCCCeEEEEeCC-CcEEEe
Q 011537 246 TLWLECTQEQNEIIFVPSGWYHQVHNLE-DTISIN 279 (483)
Q Consensus 246 a~~~e~vq~pGDiLFVPsGWwHqV~nle-dsISIn 279 (483)
..++.+.+++||.|.||+|-+|...--+ +.|..-
T Consensus 112 ~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~ai 146 (157)
T PF03079_consen 112 DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAI 146 (157)
T ss_dssp CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEE
T ss_pred CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEE
Confidence 3577899999999999999999987443 244433
No 51
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.93 E-value=14 Score=37.69 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCCCCCcccccCCCc-cceeEEEeEEEEEEeCCCCcc----cccCCCCCCccccc-cCCCCcccCCCCCCceeEEEEEeC
Q 011537 182 KGSWTPLHADVFRSY-SWSANVCGKKKWLFLSPSQCH----LVFDRNLKGCVYNI-FDDVSETDFPGFKKTLWLECTQEQ 255 (483)
Q Consensus 182 ~gs~T~lH~D~~~~~-sW~~qV~GrKrW~LfPP~~~~----~Ly~~~~~s~~~di-~d~~d~~~fP~~~~a~~~e~vq~p 255 (483)
.++.|++|.|...-. .-...|. -|+=+-|-... .+.++ |..++. ...+|.+.|++ -....+.+++
T Consensus 129 ~~~~t~~HqD~~~~~~~~~~lV~---~wiAl~d~~~dnGat~vvPg---SH~~~~~~~r~d~~~y~~---~~~~pv~lek 199 (299)
T COG5285 129 GAVATRWHQDYPLVSPGYPALVN---AWIALCDFTEDNGATLVVPG---SHKWDVIPERPDHETYLE---RNAVPVELEK 199 (299)
T ss_pred cccccccccccccccCCccceEE---EEEeccccccccCceEEEec---ccccccCCCCCCccchhh---hcceeeeecC
Confidence 345689999943221 1122222 45544443332 12232 233331 23444444442 2256789999
Q ss_pred CcEEEeCCCCeEEEEeCCC---cEEEeeecCCCC
Q 011537 256 NEIIFVPSGWYHQVHNLED---TISINHNWFNGY 286 (483)
Q Consensus 256 GDiLFVPsGWwHqV~nled---sISIn~Nf~~~~ 286 (483)
||+||.=+.-||....-.. -++++++|+...
T Consensus 200 GDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 200 GDALLFNGSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred CCEEEEcchhhhhhhcCCCCcccceEEEEEeecc
Confidence 9999998888888765433 577888777654
No 52
>PLN00212 glutelin; Provisional
Probab=64.02 E-value=38 Score=37.25 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=52.6
Q ss_pred EEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCC
Q 011537 177 VYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQN 256 (483)
Q Consensus 177 l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pG 256 (483)
+-|.|.|-.-|-|.| ...+ ..++.|+=..-++-|++..-- ..... .+. .....+-.+++..+--.-.+++|
T Consensus 85 ~~i~p~gL~lP~y~n-a~~l--iyV~qG~G~~G~v~pGcpeT~-~~~~~--~~~---~~~~~~~~~~~d~hqkv~~lr~G 155 (493)
T PLN00212 85 RVIEPQGLLLPRYSN-TPGL--VYIIQGRGSMGLTFPGCPATY-QQQFQ--QFL---TEGQSQSQKFRDEHQKIHQFRQG 155 (493)
T ss_pred EEecCCcccCccccC-CCeE--EEEEeCeEEEEEEeCCCcchh-hhhcc--ccc---ccccccccccccccccceEeccC
Confidence 457777766655553 3444 788889988888877654321 10000 000 00000111122222223488999
Q ss_pred cEEEeCCCCeEEEEeCCCc
Q 011537 257 EIIFVPSGWYHQVHNLEDT 275 (483)
Q Consensus 257 DiLFVPsGWwHqV~nleds 275 (483)
|++.||+|--|..+|.+++
T Consensus 156 DViaiPaG~~hw~yN~Gd~ 174 (493)
T PLN00212 156 DVVALPAGVAHWFYNDGDA 174 (493)
T ss_pred CEEEECCCCeEEEEeCCCC
Confidence 9999999999999999885
No 53
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=60.45 E-value=7.2 Score=34.56 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=16.9
Q ss_pred EEEEeCCcEEEeCCCCeEEE
Q 011537 250 ECTQEQNEIIFVPSGWYHQV 269 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV 269 (483)
-+.++|||.+|+|+||.=-=
T Consensus 83 ~v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 83 PVEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred EEEEcCCCEEEECCCCeEEE
Confidence 47899999999999996443
No 54
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=57.94 E-value=17 Score=30.69 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.0
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
+..++|||++++|+|=.|.....++
T Consensus 42 ~~~l~~g~~~li~p~~~H~~~~~~~ 66 (136)
T PF02311_consen 42 EYPLKPGDLFLIPPGQPHSYYPDSN 66 (136)
T ss_dssp EEEE-TT-EEEE-TTS-EEEEE-TT
T ss_pred EEEEECCEEEEecCCccEEEecCCC
Confidence 5789999999999999999998874
No 55
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=57.41 E-value=11 Score=40.13 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=25.7
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEeee
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISINHN 281 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn~N 281 (483)
.+.++|||++|||+|-.|....-. .|-|-.|
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G~-~iEima~ 268 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQGV-ALEVMAN 268 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCCe-EEEEEec
Confidence 689999999999999999987644 6666553
No 56
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=57.39 E-value=11 Score=38.92 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=24.6
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
.|.++|||.+|||+|-.|....- ..+=+..
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~G-~~lEvmq 188 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLKG-LVLEVMQ 188 (312)
T ss_pred EEecCCCCEEEecCCCceeeccc-eEEEEEe
Confidence 68999999999999999998765 5454544
No 57
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=56.81 E-value=14 Score=36.56 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=19.9
Q ss_pred EEEEEeCCcEEEeCCCCeEEEEeCC
Q 011537 249 LECTQEQNEIIFVPSGWYHQVHNLE 273 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHqV~nle 273 (483)
-+.+++|||++|||+|=.|+-.+.+
T Consensus 193 ~t~~l~pGDvlfIPkGs~~hf~tp~ 217 (233)
T PRK15457 193 ETMIAKAGDVMFIPKGSSIEFGTPS 217 (233)
T ss_pred EEEEeCCCcEEEECCCCeEEecCCC
Confidence 3679999999999999985554443
No 58
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=51.12 E-value=12 Score=34.73 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=12.8
Q ss_pred EEEEEeCCcEEEeCCCCe
Q 011537 249 LECTQEQNEIIFVPSGWY 266 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWw 266 (483)
-.++-+|||+||||.|-=
T Consensus 113 ~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp EEEEEETT-EEEE-TT-E
T ss_pred EEEEEcCCcEEEECCCCE
Confidence 367999999999999953
No 59
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=50.11 E-value=54 Score=35.96 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.7
Q ss_pred EEEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 249 LECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
-+..++|||.+++|+|=-|...|.++
T Consensus 424 ~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 424 DIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 36899999999999999999999865
No 60
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=47.40 E-value=12 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.4
Q ss_pred EEEEEeCCcEEEeCCCCeEE
Q 011537 249 LECTQEQNEIIFVPSGWYHQ 268 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHq 268 (483)
-.+.++|||++|||+|-.|.
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred cccccCCCCEEEeCCCCccc
Confidence 35789999999999999999
No 61
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=45.31 E-value=14 Score=34.19 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.9
Q ss_pred EEEEeCCcEEEeCCCCe
Q 011537 250 ECTQEQNEIIFVPSGWY 266 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWw 266 (483)
.++-+|||++|||.|-=
T Consensus 137 tv~a~aGDvifiPKgss 153 (176)
T COG4766 137 TVIAGAGDVIFIPKGSS 153 (176)
T ss_pred eEecCCCcEEEecCCCe
Confidence 57899999999999853
No 62
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=45.29 E-value=30 Score=36.47 Aligned_cols=46 Identities=20% Similarity=0.500 Sum_probs=35.3
Q ss_pred cCCCCCCceeEEEEEeCCcEEEeCCCCeEEEEeCCC-------cEEEeeecCC
Q 011537 239 DFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED-------TISINHNWFN 284 (483)
Q Consensus 239 ~fP~~~~a~~~e~vq~pGDiLFVPsGWwHqV~nled-------sISIn~Nf~~ 284 (483)
++..++..-++.+..++|+++|.|+-|.|.|.+-.. .|.+++++..
T Consensus 351 ~l~~lA~~~~l~v~~~~~~~~~l~~~~~~~~~~~~~ssg~~~v~l~~~y~~~~ 403 (437)
T KOG2508|consen 351 ELSALAGTVPLVVDLEPGDMLYLPASWFHEVTSSSASSGGSDVHIAFNYWFHP 403 (437)
T ss_pred hccccccceeEEEecccCceeeechhheeeeeccccccCCcceeEEeeccccc
Confidence 444455566889999999999999999999987543 5777775444
No 63
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=44.67 E-value=47 Score=32.47 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=54.5
Q ss_pred CccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEE
Q 011537 173 DYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECT 252 (483)
Q Consensus 173 dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~v 252 (483)
.+.-+|+|.+++.+.+|.....-+ +.|..|.-...++.-+ ..-.++
T Consensus 33 qlkVm~VGGPN~RkdyHieegeE~--FyQ~KGdMvLKVie~g--------------------------------~~rDiv 78 (279)
T KOG3995|consen 33 QLKVMFVGGPNTRKDYHIEEGEEV--FYQLKGDMVLKVLEQG--------------------------------KHRDVV 78 (279)
T ss_pred CeEEEEecCCCcccccccCCcchh--heeecCceEEeeeccC--------------------------------cceeeE
Confidence 345679999999999999876654 8888876443332211 122689
Q ss_pred EeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 253 QEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 253 q~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
.+.||+..+|+.=-|.-.-..+||.+-+
T Consensus 79 I~qGe~flLParVpHSPqRFantvGlVV 106 (279)
T KOG3995|consen 79 IRQGEIFLLPARVPHSPQRFANTVGLVV 106 (279)
T ss_pred EecCcEEEeccCCCCChhhhccceeEEE
Confidence 9999999999999998777777776643
No 64
>PLN02288 mannose-6-phosphate isomerase
Probab=42.76 E-value=15 Score=39.15 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=24.1
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEee
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISINH 280 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn~ 280 (483)
.+.|+|||+||+|+|-.|.-.. +++|=+-.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~-G~~vE~MA 281 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLS-GECIECMA 281 (394)
T ss_pred eEecCCCCEEEecCCCCceecC-CCeEEeee
Confidence 6899999999999999999764 45555544
No 65
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.93 E-value=72 Score=32.99 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=51.8
Q ss_pred CCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCCCccccccCCCCcccCCCCCCceeEEEEEeCCcEEEeC
Q 011537 183 GSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVP 262 (483)
Q Consensus 183 gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~s~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLFVP 262 (483)
|-.+|-|......+ ...|.|+-.|..+. .-...+++||.|..|
T Consensus 102 GEvApsHrHsqsAl--RFvveG~Ga~T~Vd-----------------------------------Ger~~M~~GDfilTP 144 (351)
T COG3435 102 GEVAPSHRHNQSAL--RFVVEGKGAYTVVD-----------------------------------GERTPMEAGDFILTP 144 (351)
T ss_pred cccCCcccccccce--EEEEeccceeEeec-----------------------------------CceeeccCCCEEEcc
Confidence 56778888766666 78888876665432 114689999999999
Q ss_pred CCCeEEEEeCCCcEEEeeecCCCCChHHHHHH
Q 011537 263 SGWYHQVHNLEDTISINHNWFNGYNLSWVWDL 294 (483)
Q Consensus 263 sGWwHqV~nledsISIn~Nf~~~~nl~~~~~~ 294 (483)
++-||.-.|.++-=- =|++.-.++.+..+
T Consensus 145 ~w~wHdHgn~g~eP~---iWlDgLDiplv~~l 173 (351)
T COG3435 145 AWTWHDHGNEGTEPC---IWLDGLDIPLVNSL 173 (351)
T ss_pred CceeccCCCCCCCce---EEEcccchHHHHhh
Confidence 999999888753111 18888888877654
No 66
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=40.57 E-value=39 Score=33.85 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=22.8
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
+.+|++||.+|+|++=-|...|..+
T Consensus 99 ~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 99 THELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred EEEECCCCEEEECCCCCEEEEECCC
Confidence 4599999999999999999999875
No 67
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=39.99 E-value=17 Score=33.73 Aligned_cols=17 Identities=12% Similarity=0.800 Sum_probs=14.6
Q ss_pred EEEEeCCcEEEeCCCCe
Q 011537 250 ECTQEQNEIIFVPSGWY 266 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWw 266 (483)
.+.++|||+||||..|+
T Consensus 149 n~~L~~gD~I~Vp~~~f 165 (165)
T TIGR03027 149 NVELKPGDVLIIPESWF 165 (165)
T ss_pred CceeCCCCEEEEecccC
Confidence 36899999999998774
No 68
>PRK13502 transcriptional activator RhaR; Provisional
Probab=39.69 E-value=37 Score=33.58 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=24.0
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEEe
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISIN 279 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISIn 279 (483)
+..++|||+++||+|=.|.....++.+..+
T Consensus 57 ~~~l~~g~l~li~~~~~H~~~~~~~~~~~~ 86 (282)
T PRK13502 57 PYRITRGDLFYIRAEDKHSYTSVNDLVLQN 86 (282)
T ss_pred EEeecCCcEEEECCCCcccccccCCceEEE
Confidence 579999999999999999987665544333
No 69
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=36.68 E-value=1.4e+02 Score=31.40 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.5
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcE
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTI 276 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsI 276 (483)
.+..++||++.||+.-+|+-.+.++++
T Consensus 289 ~~~W~~gD~f~vPsW~~~~h~a~~da~ 315 (335)
T TIGR02272 289 VFRFSPKDVFVVPSWHPVRFEASDDAV 315 (335)
T ss_pred EEEecCCCEEEECCCCcEecccCCCeE
Confidence 678999999999998778777777755
No 70
>PF12852 Cupin_6: Cupin
Probab=36.50 E-value=32 Score=32.07 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.3
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
.+.+++||++++|.|=-|....-.+
T Consensus 56 ~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 56 PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 3799999999999999999865544
No 71
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=35.64 E-value=1.6e+02 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.9
Q ss_pred eEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEe
Q 011537 248 WLECTQEQNEIIFVPSGWYHQVHNLEDTISIN 279 (483)
Q Consensus 248 ~~e~vq~pGDiLFVPsGWwHqV~nledsISIn 279 (483)
+-.+.|+||+-+=+|+|-||....-+..+-|+
T Consensus 152 g~~lkL~PGesitL~Pg~~HsFwae~g~vlvg 183 (225)
T COG3822 152 GSQLKLSPGESITLPPGLYHSFWAEEGGVLVG 183 (225)
T ss_pred ceeEEECCCCcEecCCCceeeeeecCCcEEEE
Confidence 45789999999999999999999877655444
No 72
>PRK11171 hypothetical protein; Provisional
Probab=34.88 E-value=63 Score=32.43 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=23.2
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
+.++++||.+++|++=-|+..|..+
T Consensus 102 ~~~L~~GDsi~~p~~~~H~~~N~g~ 126 (266)
T PRK11171 102 THALSEGGYAYLPPGSDWTLRNAGA 126 (266)
T ss_pred EEEECCCCEEEECCCCCEEEEECCC
Confidence 6799999999999999999999875
No 73
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=33.73 E-value=44 Score=39.49 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=76.2
Q ss_pred cEEEecCCCCCCCcccccCCCccceeEEEeE-EEEEEeCCCCcccc-------cCCCCCCccccccC-CCCcccCCCC--
Q 011537 175 RFVYMGAKGSWTPLHADVFRSYSWSANVCGK-KKWLFLSPSQCHLV-------FDRNLKGCVYNIFD-DVSETDFPGF-- 243 (483)
Q Consensus 175 r~l~iGp~gs~T~lH~D~~~~~sW~~qV~Gr-KrW~LfPP~~~~~L-------y~~~~~s~~~di~d-~~d~~~fP~~-- 243 (483)
.++|+|..-+.-.+|.+....++.+-+-.|. |.|+-+|+.....+ .+.- .....|... .+... -|.+
T Consensus 331 p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~-~~~~pd~~~~~~~~~-~p~~l~ 408 (904)
T KOG1246|consen 331 PWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGL-FIEQPDLLHALVTLM-SPNFLT 408 (904)
T ss_pred ccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcc-cccCccccccccccc-Ccchhh
Confidence 4689999999999999988888776666654 99999999987532 1110 011111100 00110 1222
Q ss_pred -CCceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChH
Q 011537 244 -KKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLS 289 (483)
Q Consensus 244 -~~a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~ 289 (483)
.+.+.+.++|+||+-++-=+.=||...|-+.+.+-.+||.+..-+.
T Consensus 409 ~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~ 455 (904)
T KOG1246|consen 409 DEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP 455 (904)
T ss_pred cCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence 2457889999999999999999999999888766666776655444
No 74
>PRK11171 hypothetical protein; Provisional
Probab=33.49 E-value=63 Score=32.46 Aligned_cols=29 Identities=7% Similarity=-0.151 Sum_probs=24.7
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCCcEEE
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLEDTISI 278 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nledsISI 278 (483)
+..+++||+|++|++=-|...|..+.-..
T Consensus 224 ~~~l~~GD~i~~~~~~~h~~~N~g~~~~~ 252 (266)
T PRK11171 224 WVEVEAGDFIWMRAYCPQACYAGGPGPFR 252 (266)
T ss_pred EEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence 56899999999999999999998764433
No 75
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=32.79 E-value=62 Score=29.46 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCcEEEeCCCCeEEEEe
Q 011537 246 TLWLECTQEQNEIIFVPSGWYHQVHN 271 (483)
Q Consensus 246 a~~~e~vq~pGDiLFVPsGWwHqV~n 271 (483)
.....+.++|||+||.-+.-||....
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-
T ss_pred CceEEeecCCCeEEEEcCCccccCCC
Confidence 45678999999999999999998654
No 76
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=30.48 E-value=80 Score=31.16 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=43.5
Q ss_pred EEEecCCCCCCCcccccCCCccceeEEEe--EEEEEEeCCCCcccccCCCCCCccccc-cCCCCcccCCCCCCceeEEEE
Q 011537 176 FVYMGAKGSWTPLHADVFRSYSWSANVCG--KKKWLFLSPSQCHLVFDRNLKGCVYNI-FDDVSETDFPGFKKTLWLECT 252 (483)
Q Consensus 176 ~l~iGp~gs~T~lH~D~~~~~sW~~qV~G--rKrW~LfPP~~~~~Ly~~~~~s~~~di-~d~~d~~~fP~~~~a~~~e~v 252 (483)
.+.|...|..||+|+.....= -.--+| .=...|+-.+....+-. .+.+.+ .+. ....+| ..-+++
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~E--DIINRGGG~L~i~l~~s~~~~~~~~----~~~v~V~~DG-~~~t~~-----aG~~l~ 157 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKME--DIINRGGGNLVIELYNSDPDGELDA----DTDVTVPVDG-IRRTVP-----AGTQLR 157 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--E--EEEEEEES-EEEEEEEB--TTSSB-----SS-EEEEETT-EEEEE------TT-EEE
T ss_pred hheeccCCCcCCcccCcchhh--heeecCCceEEEEEEeccCCCcccc----CCCeEEecCC-cEEEec-----CCceEE
Confidence 467777888999998765432 122232 33345555443221100 011111 011 011122 235799
Q ss_pred EeCCcEEEeCCCCeEEEEeCCCcEEEe
Q 011537 253 QEQNEIIFVPSGWYHQVHNLEDTISIN 279 (483)
Q Consensus 253 q~pGDiLFVPsGWwHqV~nledsISIn 279 (483)
|.|||-|-+|+|-||+-..-+.++-|.
T Consensus 158 L~PGESiTL~Pg~yH~Fw~e~g~vLig 184 (225)
T PF07385_consen 158 LNPGESITLPPGIYHWFWGEGGDVLIG 184 (225)
T ss_dssp E-TT-EEEE-TTEEEEEEE-TTSEEEE
T ss_pred eCCCCeEeeCCCCeeeEEecCCCEEEE
Confidence 999999999999999999877664443
No 77
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.27 E-value=58 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.2
Q ss_pred eeEEEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 247 LWLECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 247 ~~~e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
+.+.+.+++||.|-||+|-+|...--++
T Consensus 116 ~~~~i~c~~gDLI~vP~gi~HwFtlt~~ 143 (181)
T COG1791 116 KVYQIRCEKGDLISVPPGIYHWFTLTES 143 (181)
T ss_pred cEEEEEEccCCEEecCCCceEEEEccCC
Confidence 4567888999999999999999775544
No 78
>PRK13501 transcriptional activator RhaR; Provisional
Probab=28.85 E-value=63 Score=32.20 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=21.9
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
...+++||++|||+|=.|++...++
T Consensus 57 ~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 57 PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred eeeecCCeEEEEcCCCcccccccCC
Confidence 5789999999999999999887554
No 79
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=28.43 E-value=82 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNL 272 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nl 272 (483)
.+.+.|||+++||+|=.|+....
T Consensus 62 ~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 62 RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred EEEECCCcEEEeCCCCccceeee
Confidence 57999999999999999987543
No 80
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=25.90 E-value=7.4e+02 Score=26.72 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHhhhh-HHHHHHHhhhhccC--CC---HHHHHHHHHHHhhh-----------hHHHH
Q 011537 292 WDLLLRDYNEAKEY----IEDIRDICDD-FEGLCQRNLAANTG--MN---FYDFFSFLSRFSLV-----------NVVIL 350 (483)
Q Consensus 292 ~~~l~~~l~~~~~~----~~d~~~~~~~-f~~~cq~~~~~~~g--~~---~~~f~~~~~~~~~~-----------~~~~l 350 (483)
...|++|+.=+.-+ -+++|.+-.+ |+.+|..++....+ ++ =..|+.+|.-+.-. .++.+
T Consensus 11 ~k~lk~ey~fl~nwp~y~f~~~rg~y~~~y~siC~~is~~s~~~~~~k~~C~kffs~leni~~rg~l~~n~~iw~~~~ew 90 (420)
T PTZ00473 11 VKALKKEYPFLANWPDYHFEDLRGIYNATYESICEEISSVSDYNKVNKENCIKFFSILENIVRRGDLKKNDDIWKDFVEW 90 (420)
T ss_pred HHHHHHhchHhhcCcccCHHHHhhhhHhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 34455554433333 2455555444 88899888866655 22 23455555433222 23333
Q ss_pred HhhccccccccCCCCccccchhccHHHHH--HHHHHhccccccccccchhhhhHHhcCChhHHHHHhhhhHHHhhhhhhh
Q 011537 351 FHLRRDYENQIWSSSPVARHLALNLVSIQ--KIALKMKSVNDLAGSFGFFMYLKETLDDPEFLKLCMGFCRTYGMIHEEE 428 (483)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (483)
+...+ ..... .+.-..-..+|++.+. .||..+..-+.+-++.--+.+|+|.+ -|-+.++.+=..|..-+
T Consensus 91 ~y~~~--~~~~v-~s~~l~~f~~~~~~li~k~il~~f~kfk~~~~~~~e~e~ImKL~------yFteNig~Ik~lm~~~~ 161 (420)
T PTZ00473 91 FYNKQ--EKFDV-FSNHLESFNYDFEYLIQKNILKNFNKFKKLYENNYELEDIMKLF------YFTENVGDIKSLMGAPD 161 (420)
T ss_pred HhcCc--ccccc-chHHHHHHHHHHHHHHHHHhhhhHhhcccccccchhHHHHHHHH------HHHhhhHHHHHHhcCCc
Confidence 32111 11100 1112344566776654 44444444444444444455555543 34456666666666666
Q ss_pred hhhhHhhhhHhhhhhcc----ccccCChh
Q 011537 429 KWTCEIKKALMLDFEDY----DSLISSPE 453 (483)
Q Consensus 429 ~~~~~~~~~~~~~~~~~----~~~~~~~~ 453 (483)
+..++.+|..+.+-++. ..++|++.
T Consensus 162 ~~~y~s~C~fvn~CidIYrk~i~~~Cs~~ 190 (420)
T PTZ00473 162 NEHYASSCKFVNDCLDIYRKYKDEKCSGN 190 (420)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 77777777777776655 44666664
No 81
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=25.16 E-value=1.3e+02 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEEeCCcEEEeCCCCeEEEEeCCCcEE
Q 011537 249 LECTQEQNEIIFVPSGWYHQVHNLEDTIS 277 (483)
Q Consensus 249 ~e~vq~pGDiLFVPsGWwHqV~nledsIS 277 (483)
-+.++.+|++.+||+|=.....|+.+.-+
T Consensus 51 ~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a 79 (85)
T PF11699_consen 51 TSFVVTKGGSFQVPRGNYYSIKNIGNEEA 79 (85)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEE-SSS-E
T ss_pred cEEEEeCCCEEEECCCCEEEEEECCCCcE
Confidence 36789999999999999999999876433
No 82
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=25.06 E-value=97 Score=30.65 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhccCCCHHHHHHHHHHHhhhhHHHHHhhccccccccCCCCccccchhccHHHHHHHH
Q 011537 303 KEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFSFLSRFSLVNVVILFHLRRDYENQIWSSSPVARHLALNLVSIQKIA 382 (483)
Q Consensus 303 ~~~~~d~~~~~~~f~~~cq~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (483)
.++++=+++..=+|+.| .+.|++..+|.+.|-...+ .-+-+-.--..|.+||++-+-++|
T Consensus 118 ~ESieLL~ksgIdFkkH------e~~GI~v~eF~elLm~SGL--------------vm~e~VtWitfHsaYDfgyLikil 177 (299)
T COG5228 118 TESIELLRKSGIDFKKH------ENLGIDVFEFSELLMDSGL--------------VMDESVTWITFHSAYDFGYLIKIL 177 (299)
T ss_pred hHHHHHHHHcCCChhhH------hhcCCCHHHHHHHHhccCc--------------eeccceEEEEeecchhHHHHHHHH
Confidence 44555555545578877 4679999999998632211 111112236789999999999888
Q ss_pred HH
Q 011537 383 LK 384 (483)
Q Consensus 383 ~~ 384 (483)
.+
T Consensus 178 t~ 179 (299)
T COG5228 178 TN 179 (299)
T ss_pred hc
Confidence 75
No 83
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.52 E-value=41 Score=33.12 Aligned_cols=15 Identities=13% Similarity=0.519 Sum_probs=13.4
Q ss_pred EEeCCcEEEeCCCCe
Q 011537 252 TQEQNEIIFVPSGWY 266 (483)
Q Consensus 252 vq~pGDiLFVPsGWw 266 (483)
.++|||+||||..|+
T Consensus 225 ~l~~gDii~V~~s~~ 239 (239)
T TIGR03028 225 LVQPDDVIYVRESLF 239 (239)
T ss_pred ccCCCCEEEEeCccC
Confidence 489999999999885
No 84
>PRK13500 transcriptional activator RhaR; Provisional
Probab=22.57 E-value=1.1e+02 Score=31.10 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=22.2
Q ss_pred EEEEeCCcEEEeCCCCeEEEEeCCC
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHNLED 274 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~nled 274 (483)
...+++||++|||+|=.|...+.++
T Consensus 87 ~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 87 PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred EEeecCCeEEEECCCCeecccccCC
Confidence 5789999999999999999887665
No 85
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=21.02 E-value=47 Score=21.17 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=15.5
Q ss_pred cCChhHHHHHHHHHhhhhc
Q 011537 449 ISSPEDLVKFIDFAAGKFS 467 (483)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (483)
|.+.-||||+|=.+|.|+.
T Consensus 6 isTIgdfvKlI~~TV~KF~ 24 (25)
T PF05372_consen 6 ISTIGDFVKLIIETVKKFT 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566799999999998863
No 86
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=20.88 E-value=88 Score=25.69 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=22.9
Q ss_pred EeCCcEEEeCC-CCeEEEEeC-CC--cEEEeeec
Q 011537 253 QEQNEIIFVPS-GWYHQVHNL-ED--TISINHNW 282 (483)
Q Consensus 253 q~pGDiLFVPs-GWwHqV~nl-ed--sISIn~Nf 282 (483)
-++|++|+.|+ ..||.|... .. =++|+.+|
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSLTFWF 99 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEEEEEE
Confidence 89999999999 999999988 32 45555543
No 87
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=20.21 E-value=58 Score=34.42 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEEeCCcEEEeCCCCeEEEEe
Q 011537 250 ECTQEQNEIIFVPSGWYHQVHN 271 (483)
Q Consensus 250 e~vq~pGDiLFVPsGWwHqV~n 271 (483)
.+.|+|||.+|+|+|=.|....
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4699999999999999999776
Done!