BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011538
(483 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572295|ref|XP_002527086.1| conserved hypothetical protein [Ricinus communis]
gi|223533509|gb|EEF35249.1| conserved hypothetical protein [Ricinus communis]
Length = 476
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 309/406 (76%), Positives = 358/406 (88%), Gaps = 3/406 (0%)
Query: 55 STHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDKKSE 114
ST I FCSQ D FD+LSS Q PE E + + NEELELLNKP+ V I+NG++ EVDK+SE
Sbjct: 19 STQISFCSQNDTFDNLSSTQVPEEQEEDRIRENEELELLNKPSPVVINNGLSIEVDKESE 78
Query: 115 KPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE-DKVSVEYYEPKPG 173
D++EALAPFLKFF+PRDS EE++EEG E+GV + + +++ E KV+V+YYEPKPG
Sbjct: 79 TIDKDEALAPFLKFFEPRDSLEEIKEEGKELGVIEGNSNGNNEDKEAKKVNVDYYEPKPG 138
Query: 174 DFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKM 233
DFV+GVVVSGNE+KLDVNVGADLLGTMLTKEVLPLYDKEM++LLCD++KDAE FMVRGK+
Sbjct: 139 DFVVGVVVSGNESKLDVNVGADLLGTMLTKEVLPLYDKEMEYLLCDMEKDAERFMVRGKI 198
Query: 234 GIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQI 293
GI+KD+ AMSGG G GRPVVETGT+LFAEVLGRTLSGRPLLSTRRLFR++AWHRVRQI
Sbjct: 199 GIIKDE--AAMSGGPGLGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRIAWHRVRQI 256
Query: 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRI 353
K+LNEPIEV+ TEWNTGGLLTRIEGLRAFLPKAEL++RV NF ELKE V RR+ V ITRI
Sbjct: 257 KELNEPIEVRITEWNTGGLLTRIEGLRAFLPKAELMNRVKNFKELKENVSRRINVLITRI 316
Query: 354 NEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
NED N+LILSEREAW LNLREGTLLEG V+KI+PYGAQ+RIG++NRSGLLHISN++R+R
Sbjct: 317 NEDNNELILSEREAWEMLNLREGTLLEGNVRKIFPYGAQVRIGETNRSGLLHISNITRSR 376
Query: 414 VTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
VT+VSDLL ERVKVLVVKSMFPDKISLSIADLESEPGLFVS+KE
Sbjct: 377 VTAVSDLLKVDERVKVLVVKSMFPDKISLSIADLESEPGLFVSNKE 422
>gi|359495207|ref|XP_002263508.2| PREDICTED: uncharacterized protein LOC100240915 [Vitis vinifera]
Length = 513
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 318/459 (69%), Positives = 370/459 (80%), Gaps = 25/459 (5%)
Query: 10 SFTFTLLNSAPPL-STCSFVQNGNA-KYPLQ--QSRKFHSFAASFRFLRSTHIVFCSQKD 65
SF F+ S PPL S SF N K PL+ QS+ S S R+T I FCS D
Sbjct: 13 SFRFS---SHPPLNSNISFTSFHNTPKLPLRKPQSKTLVSPKNS-PVWRTTQISFCSPND 68
Query: 66 VFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPF 125
+F D+SS Q PE E +G++ EELELL KP+ VP++NG AS++D + +KPD++EALAPF
Sbjct: 69 IFYDISSTQLPETPEIDGVQDIEELELLGKPSPVPLNNGSASDIDSELKKPDKDEALAPF 128
Query: 126 LKFFKPRDSAEEVE----EEGSEVGVSRESIDVDDKVGEDK-VSVEYYEPKPGDFVIGVV 180
LKFFKPR+S+EE E+GSE+ S G K VSVEYYEPKPGDFV+GVV
Sbjct: 129 LKFFKPRESSEEANGASGEDGSEISES----------GSTKLVSVEYYEPKPGDFVVGVV 178
Query: 181 VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDD 240
VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEM++LLCD++KDAEEFMV GKM IV++DD
Sbjct: 179 VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEYLLCDVEKDAEEFMVHGKMSIVRNDD 238
Query: 241 AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPI 300
A++ G PVVETGTVLFAEVLGRTLSGRPLLSTRR FR++AWHRVRQIKQLNEPI
Sbjct: 239 ALSRVPMQG--SPVVETGTVLFAEVLGRTLSGRPLLSTRRFFRRIAWHRVRQIKQLNEPI 296
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDL 360
EV+ TEWNTGGLLTRIEGLRAFLPKAELL+RV +FTELKE VGRR+YVQITRI+E NDL
Sbjct: 297 EVRITEWNTGGLLTRIEGLRAFLPKAELLNRVKSFTELKENVGRRLYVQITRIDEAKNDL 356
Query: 361 ILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
ILSE++AW +L+EGTLLEGTVKKI+PYGAQI IG+SNRSGLLHISN++R RVTSVSDL
Sbjct: 357 ILSEKDAWEKSHLQEGTLLEGTVKKIFPYGAQIMIGESNRSGLLHISNITRARVTSVSDL 416
Query: 421 LNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
L E+VKV+VVKSMFP+KI+LSIADLESEPGLF+S+KE
Sbjct: 417 LTVDEKVKVMVVKSMFPNKIALSIADLESEPGLFLSNKE 455
>gi|449446381|ref|XP_004140950.1| PREDICTED: 30S ribosomal protein S1 homolog A-like [Cucumis
sativus]
Length = 530
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/409 (73%), Positives = 354/409 (86%), Gaps = 3/409 (0%)
Query: 52 FLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDK 111
F R + ++FCS+ D+FD+LSS Q P+ +G++ +E+ LLNKP+ PISNGV+SE+D+
Sbjct: 71 FRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDGIQEIDEIGLLNKPSPAPISNGVSSEIDQ 130
Query: 112 KSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVG-EDKVSVEYYEP 170
+ E PDE EALAPF+KFFK +DSA+E EEE + E+ID DD+ +K++VEYYEP
Sbjct: 131 EVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIANKLNVEYYEP 190
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
KPGD V+GVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEM+ L CDL KDAE FM+
Sbjct: 191 KPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMESLTCDLDKDAESFMMN 250
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
GKMG+VK +DA S G GPGRPVVE GTVLFAEVLGRTLSGRPLLSTRRLFR++AWHRV
Sbjct: 251 GKMGLVKYEDA--FSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRV 308
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQI 350
RQIK L+EPIEVK +EWNTGGLLTRIEGLRAFLPKAELL+RVNNFTELKE VGRR++VQI
Sbjct: 309 RQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQI 368
Query: 351 TRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS 410
TR++E NDLILSE++AW TL LREGTLLEGTVKKI+PYGAQIRIGD+NRSGLLH+SN++
Sbjct: 369 TRMDEAKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNIT 428
Query: 411 RTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
R RVTSVSDLL+ GE+V VLVVKSMFPDKISLSIADLESEPGLF+++KE
Sbjct: 429 RARVTSVSDLLSVGEKVNVLVVKSMFPDKISLSIADLESEPGLFITNKE 477
>gi|449527959|ref|XP_004170975.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101224960 [Cucumis sativus]
Length = 529
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/409 (69%), Positives = 342/409 (83%), Gaps = 4/409 (0%)
Query: 52 FLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDK 111
F R + ++FCS+ D+FD+LSS Q P+ +G++ +E+ LLNKP+ PISNGV+SE+D+
Sbjct: 71 FRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDGIQEIDEIGLLNKPSPAPISNGVSSEIDQ 130
Query: 112 KSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVG-EDKVSVEYYEP 170
+ E PDE EALAPF+KFFK +DSA+E EEE + E+ID DD+ +K++VEYYEP
Sbjct: 131 EVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIANKLNVEYYEP 190
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
KPGD V+GVVVSGNEN ++ + + KEVLPLYDKEM+ L CDL KDAE FM+
Sbjct: 191 KPGDVVVGVVVSGNENSW-ISTWGGFVRNNVDKEVLPLYDKEMESLTCDLDKDAESFMMN 249
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
GKMG+VK +DA S G GPGRPVVE GTVLFAEVLGRTLSGRPLLSTRRLFR++AWHRV
Sbjct: 250 GKMGLVKYEDA--FSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRV 307
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQI 350
RQIK L+EPIEVK +EWNTGGLLTRIEGLRAFLPKAELL+RVNNFTELKE VGRR++VQI
Sbjct: 308 RQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQI 367
Query: 351 TRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS 410
TR++E NDLILSE++AW TL LREGTLLEGTVKKI+PYGAQIRIGD+NRSGLLH+SN++
Sbjct: 368 TRMDEAKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNIT 427
Query: 411 RTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
R RVTSVSDLL+ GE+V VLVVKSMFPDKISLSIADLESEPGLF+++KE
Sbjct: 428 RARVTSVSDLLSVGEKVNVLVVKSMFPDKISLSIADLESEPGLFITNKE 476
>gi|297739376|emb|CBI29366.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 283/375 (75%), Positives = 325/375 (86%), Gaps = 17/375 (4%)
Query: 90 LELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVE----EEGSEV 145
LELL KP+ VP++NG AS++D + +KPD++EALAPFLKFFKPR+S+EE E+GSE+
Sbjct: 15 LELLGKPSPVPLNNGSASDIDSELKKPDKDEALAPFLKFFKPRESSEEANGASGEDGSEI 74
Query: 146 GVSRESIDVDDKVGEDK-VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKE 204
S G K VSVEYYEPKPGDFV+GVVVSGNENKLDVNVGADLLGTMLTKE
Sbjct: 75 SES----------GSTKLVSVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKE 124
Query: 205 VLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAE 264
VLPLYDKEM++LLCD++KDAEEFMV GKM IV++DDA +S G PVVETGTVLFAE
Sbjct: 125 VLPLYDKEMEYLLCDVEKDAEEFMVHGKMSIVRNDDA--LSRVPMQGSPVVETGTVLFAE 182
Query: 265 VLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP 324
VLGRTLSGRPLLSTRR FR++AWHRVRQIKQLNEPIEV+ TEWNTGGLLTRIEGLRAFLP
Sbjct: 183 VLGRTLSGRPLLSTRRFFRRIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAFLP 242
Query: 325 KAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVK 384
KAELL+RV +FTELKE VGRR+YVQITRI+E NDLILSE++AW +L+EGTLLEGTVK
Sbjct: 243 KAELLNRVKSFTELKENVGRRLYVQITRIDEAKNDLILSEKDAWEKSHLQEGTLLEGTVK 302
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444
KI+PYGAQI IG+SNRSGLLHISN++R RVTSVSDLL E+VKV+VVKSMFP+KI+LSI
Sbjct: 303 KIFPYGAQIMIGESNRSGLLHISNITRARVTSVSDLLTVDEKVKVMVVKSMFPNKIALSI 362
Query: 445 ADLESEPGLFVSDKE 459
ADLESEPGLF+S+KE
Sbjct: 363 ADLESEPGLFLSNKE 377
>gi|356534027|ref|XP_003535559.1| PREDICTED: uncharacterized protein LOC100820145 [Glycine max]
Length = 513
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 293/437 (67%), Positives = 341/437 (78%), Gaps = 25/437 (5%)
Query: 36 PLQQSRKFHSFAASFRF-------------LRSTHIVFCSQKDVFDDLSSAQFPENVENE 82
P + KF SFA + L TH S+ D FD S+ ++ ++
Sbjct: 37 PRKNPTKFRSFAKVVLYTPRASIVSKKDPILGYTHFTLRSRSDGFDGFSTDVSQDDGTSQ 96
Query: 83 GLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEG 142
LE +LELLNKP+ V ++ +SEV+ + EKP +EEALAPFLKFFK +DS +EVEE+G
Sbjct: 97 ELE---QLELLNKPSPVLVTEESSSEVEVEEEKPSKEEALAPFLKFFKGKDSGQEVEEDG 153
Query: 143 SEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLT 202
+ E D KVSVEYYEPKPGDFV+GVVVSGNENKLDVNVGADLLGTMLT
Sbjct: 154 EGLEGENEEGD-------KKVSVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLT 206
Query: 203 KEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLF 262
KEVLPLY KEM+ LLCD+ KDAE+FMV GKMGIVK+++AI SG PGRPV+E GT+LF
Sbjct: 207 KEVLPLYGKEMENLLCDVDKDAEDFMVNGKMGIVKNEEAI--SGVPVPGRPVLEIGTILF 264
Query: 263 AEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAF 322
AEVLGRTLSGRPLLSTRRLFR++AWHRVRQIKQLNEPIEV+ TEWNTGGLLTRIEGLRAF
Sbjct: 265 AEVLGRTLSGRPLLSTRRLFRRIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAF 324
Query: 323 LPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGT 382
LPKAEL+ R N+FTELKE VG RMYVQIT+I+E N+LILSEREAW L LREGTLL+GT
Sbjct: 325 LPKAELVKRANSFTELKENVGCRMYVQITQIDETKNNLILSEREAWQKLYLREGTLLDGT 384
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
VKKI PYGAQI++G +NRSGLLH+SN+SR VTSVS++L+ E VK LVVKSMFPDKISL
Sbjct: 385 VKKILPYGAQIKLGKTNRSGLLHVSNISRAEVTSVSNILSVDENVKALVVKSMFPDKISL 444
Query: 443 SIADLESEPGLFVSDKE 459
SIADLESEPGLF+S+KE
Sbjct: 445 SIADLESEPGLFLSNKE 461
>gi|297839005|ref|XP_002887384.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333225|gb|EFH63643.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 501
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 278/422 (65%), Positives = 327/422 (77%), Gaps = 35/422 (8%)
Query: 42 KFHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLV 99
+F SFA F R + I FCS++DV VEN G+ EELELLNKP+ V
Sbjct: 56 RFRSFAICRDFATRGAYGIRFCSREDV----------SGVENGGIVAEEELELLNKPSPV 105
Query: 100 PISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVG 159
P SE +K++ K D++E L PFLKFFKP E +E E
Sbjct: 106 P-----KSENEKENGKADDDEILEPFLKFFKPEGEGEGIEAEEET--------------- 145
Query: 160 EDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCD 219
D+VSVEYY+PKPGDFV+GVVVSGNENKLDV++GAD+LGTMLTKE+LPLYDKE+D+LLCD
Sbjct: 146 -DRVSVEYYDPKPGDFVVGVVVSGNENKLDVSIGADMLGTMLTKEILPLYDKELDYLLCD 204
Query: 220 LKKDAEEFMVRGKMGIVKDDD--AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLS 277
LK DAEEF+V GKMGI KDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS
Sbjct: 205 LKYDAEEFLVNGKMGIFKDDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLS 264
Query: 278 TRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE 337
+RR FR+++WHRVRQIKQ+NEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ +VNNFTE
Sbjct: 265 SRRYFRRISWHRVRQIKQVNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNNFTE 324
Query: 338 LKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGD 397
LKE VGRR+ VQITR+NED NDLILSE+ AW L LREGTLLEGTV KI PYGAQ+++GD
Sbjct: 325 LKENVGRRLLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVAKILPYGAQVKLGD 384
Query: 398 SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSD 457
S+RSGLLHISN++R R+ SVSD+L E VKVLVVKS+FPDKISLSIADLESEPGLF+SD
Sbjct: 385 SSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFPDKISLSIADLESEPGLFISD 444
Query: 458 KE 459
+E
Sbjct: 445 RE 446
>gi|334183835|ref|NP_177317.2| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|7239499|gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from
this gene [Arabidopsis thaliana]
gi|332197102|gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 500
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/420 (65%), Positives = 325/420 (77%), Gaps = 33/420 (7%)
Query: 43 FHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVP 100
F F+ F +R + I FCS++DV V N G+ EE+ELLNKPN +P
Sbjct: 56 FRGFSICREFAVRGAYGIRFCSREDV----------SGVGNGGIVAEEEIELLNKPNPLP 105
Query: 101 ISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE 160
S +++S K D++ L PFLKFFKP + E E VS E+
Sbjct: 106 KSE------NEESGKADDDAILEPFLKFFKPEEEGEG-----IESEVSDET--------- 145
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL 220
D+VSVEYY+PKPGDFV+GVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+D+LLCDL
Sbjct: 146 DRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDL 205
Query: 221 KKDAEEFMVRGKMGIVKDDD-AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
K DAEEF+V GKMGIVKDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS+R
Sbjct: 206 KYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSR 265
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
R FR++AWHRVRQIKQLNEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ +VN FTELK
Sbjct: 266 RYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELK 325
Query: 340 EKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSN 399
E VGRR VQITR+NED NDLILSE+ AW L LREGTLLEGTV KI PYGAQ+++GDS+
Sbjct: 326 ENVGRRFLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSS 385
Query: 400 RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
RSGLLHISN++R R+ SVSD+L E VKVLVVKS+FPDKISLSIADLESEPGLF+SD+E
Sbjct: 386 RSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFPDKISLSIADLESEPGLFISDRE 445
>gi|224066601|ref|XP_002302157.1| predicted protein [Populus trichocarpa]
gi|222843883|gb|EEE81430.1| predicted protein [Populus trichocarpa]
Length = 486
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 282/477 (59%), Positives = 336/477 (70%), Gaps = 73/477 (15%)
Query: 5 VQACKSFTFTLLNSAPPLSTCSFV---------QNGNAKYPLQQSRKFHSFAA------- 48
+Q CKS T L + + P +T S V N AK P FHSF +
Sbjct: 6 LQPCKSLT--LFSYSLPSNTDSLVITHKRSIVHHNKCAKPPC-----FHSFCSLGTLKAI 58
Query: 49 ----SFRFLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNG 104
+ + +S+ + CSQ DVFDD SS Q PE ++ ++ NEELELLNKP+ V +NG
Sbjct: 59 FLSKNSQLWKSSLVTLCSQNDVFDDFSSTQLPEKERDDRIQVNEELELLNKPSPVIFNNG 118
Query: 105 VASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGED-KV 163
+ E DK+SEKP ++EALAPFLKFFK DS +EV E+ ++GV E VD++ E K+
Sbjct: 119 LDVEADKESEKPGKDEALAPFLKFFKSNDSLDEVSEDERDLGVVEERSGVDNEDKEPRKI 178
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+V+YYEPKPGDFV+GVVVSGNENKLDVN+GADLLGTMLTKEVLPLYDKEM+FLLCD KKD
Sbjct: 179 NVDYYEPKPGDFVVGVVVSGNENKLDVNIGADLLGTMLTKEVLPLYDKEMEFLLCDTKKD 238
Query: 224 AEEFMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
+EFMV+GKMGIVKD+ +AMS G G G+PVVETGTVLF+EVLGRTLSGRPLLSTRRLF
Sbjct: 239 VKEFMVKGKMGIVKDE--VAMSPGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLF 296
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R++AW RVRQ GLRAFLPKAEL++RVNNF ELKE V
Sbjct: 297 RRLAWQRVRQ-------------------------GLRAFLPKAELMNRVNNFKELKENV 331
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSG 402
GR++YV I RINE N+LILSEREAW +NLREGTLLEGTVKK++PYGAQ+RIG++NRS
Sbjct: 332 GRQIYVLIKRINESNNELILSEREAWEMINLREGTLLEGTVKKLFPYGAQVRIGETNRSD 391
Query: 403 LLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
LL + E+VKVLV KSMFPDKISLSIADLESEPGLFVS+KE
Sbjct: 392 LLKVD-----------------EKVKVLVAKSMFPDKISLSIADLESEPGLFVSNKE 431
>gi|422778917|gb|AFX82591.1| plastid S1 binding domain protein precursor [Arabidopsis thaliana]
Length = 487
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 270/420 (64%), Positives = 317/420 (75%), Gaps = 46/420 (10%)
Query: 43 FHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVP 100
F F+ F +R + I FCS++DV V N G+ EE+ELLNKPN +P
Sbjct: 56 FRGFSICREFAVRGAYGIRFCSREDV----------SGVGNGGIVAEEEIELLNKPNPLP 105
Query: 101 ISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE 160
S +++S K D++ L PFLKFFKP + E +E E VS E+
Sbjct: 106 KSE------NEESGKADDDAILEPFLKFFKPEEEGEGIESE-----VSDET--------- 145
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL 220
D+VSVEYY+PKPGDFV+GVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+D+LLCDL
Sbjct: 146 DRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDL 205
Query: 221 KKDAEEFMVRGKMGIVKDDD-AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
K DAEEF+V GKMGIVKDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS+R
Sbjct: 206 KYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSR 265
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
R FR++AWHRVRQIKQLNEPIEVK TEWNTGGLLTRIEGLRAF+PK EL
Sbjct: 266 RYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQEL----------- 314
Query: 340 EKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSN 399
VGRR VQITR+NED NDLILSE+ AW L LREGTLLEGTV KI PYGAQ+++GDS+
Sbjct: 315 --VGRRFLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSS 372
Query: 400 RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
RSGLLHISN++R R+ SVSD+L E VKVLVVKS+FPDKISLSIADLESEPGLF+SD+E
Sbjct: 373 RSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFPDKISLSIADLESEPGLFISDRE 432
>gi|356576093|ref|XP_003556168.1| PREDICTED: 30S ribosomal protein S1-like [Glycine max]
Length = 366
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/297 (81%), Positives = 271/297 (91%), Gaps = 2/297 (0%)
Query: 163 VSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKK 222
VSVEYYE KPGDFV+GVVVSGNENKLDVNVGADLLGTMLTKEVLPLY KEM+ LLCD++K
Sbjct: 20 VSVEYYESKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYGKEMENLLCDVEK 79
Query: 223 DAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
DAE+FMVRGKMGIVK+++AI SG PGRPVVE GT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 80 DAEDFMVRGKMGIVKNEEAI--SGVPVPGRPVVEIGTILFAEVLGRTLSGRPLLSTRRLF 137
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R++AWHRVRQIKQLNEPIEV+ TEWNTGGLLTRIEGLRAFLPKAEL+ R N+FTELKE V
Sbjct: 138 RRIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAFLPKAELVKRANSFTELKENV 197
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSG 402
GR MYVQIT+I+E N+LILSE+EAW L LREGTLL+GTVKKI PYGAQI++G +NRSG
Sbjct: 198 GRCMYVQITQIDETKNNLILSEKEAWQKLYLREGTLLDGTVKKILPYGAQIKLGKTNRSG 257
Query: 403 LLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
LLH+SN+SR VTSVS++L+ E VKVLVVKSMFPDKISLSIADLESEPGLF+S+KE
Sbjct: 258 LLHVSNISRAEVTSVSNILSVDENVKVLVVKSMFPDKISLSIADLESEPGLFLSNKE 314
>gi|356561395|ref|XP_003548967.1| PREDICTED: 30S ribosomal protein S1-like [Glycine max]
Length = 439
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/389 (65%), Positives = 308/389 (79%), Gaps = 8/389 (2%)
Query: 88 EELELLNKPNLVPISNGVASEVDKKSEKPD-EEEALAPFLKFFK-PRDSAEEVEEEGSEV 145
E LEL +KP+LVPI N SE+D SE EE+ LAPFLKFFK DS E EE G +
Sbjct: 18 ETLELQDKPSLVPIKNESFSEIDVHSENDSTEEDVLAPFLKFFKGSNDSVVEEEEAGGVL 77
Query: 146 GVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEV 205
S+E + + +K EYYEPKPGDFV+GVVVSGNENKL+VNVG++L GTMLTKEV
Sbjct: 78 EGSKERGNESENA--EKFCAEYYEPKPGDFVVGVVVSGNENKLNVNVGSELPGTMLTKEV 135
Query: 206 LPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEV 265
LPLY KEM+ LLCD+ E V+GK+GI+K+DDAI +G PG VVE GT+LFAEV
Sbjct: 136 LPLYSKEMEHLLCDVNNAEESPTVQGKIGILKNDDAI--NGVPVPGGTVVEIGTILFAEV 193
Query: 266 LGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPK 325
LGRTL+GRPLLSTRRLFR++AWHR+RQIKQL EPIEV+ TEWNT GLLTRIEGLRAFLPK
Sbjct: 194 LGRTLAGRPLLSTRRLFRRIAWHRLRQIKQLGEPIEVRITEWNTKGLLTRIEGLRAFLPK 253
Query: 326 AELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKK 385
AEL+ R N+ TELKE +GR M+VQ+ ++E N+LILSEREAW LNLREGTLLEGTV+K
Sbjct: 254 AELMKRANSITELKENIGRHMHVQVILVDEAENNLILSEREAWEKLNLREGTLLEGTVRK 313
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
I PYGAQIRIG++NRSGLLH+SN++R ++TS+SD+L+ E+VKVLVVKS+ DKISLSIA
Sbjct: 314 ILPYGAQIRIGETNRSGLLHVSNITRAQITSISDILSVDEKVKVLVVKSVSHDKISLSIA 373
Query: 446 DLESEPGLFVSDKEVHIIFLFILLFNKQY 474
DLESEPGLF+S+KE +FL + K+Y
Sbjct: 374 DLESEPGLFLSNKER--VFLEADMMAKKY 400
>gi|357132802|ref|XP_003568017.1| PREDICTED: uncharacterized protein LOC100833069 isoform 1
[Brachypodium distachyon]
Length = 512
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 249/350 (71%), Gaps = 16/350 (4%)
Query: 120 EALAPFLKFFKPRDSAEEVEEEGSEVGVS-RESIDVDDKVGEDK--VSVEYYEPKPGDFV 176
EALAP+L FF+ + +GSE + R S+D + G+D V YY+PKPGD V
Sbjct: 100 EALAPYLNFFQVKGG------DGSECAAAVRSSVDDASEDGDDAGGRGVIYYDPKPGDLV 153
Query: 177 IGVVVSGNENKLDVNVGADL-LGTMLTKEVLPLYDKEMDFLLCDLKKD---AEEFMVRGK 232
+GVVV G+ LDV+VGA ML KE P+ E+ +L CD+ A EF G+
Sbjct: 154 VGVVVGGDWRALDVDVGAGGEPALMLAKEAAPVSAVELGYLACDVASSGGGASEFAAEGR 213
Query: 233 MGIV---KDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
+G+V ++ A G G PVV G V+FAEVLGRTL GRPLLS RRLFR++AWHR
Sbjct: 214 VGVVVSGREGSVTARRSGKDKGAPVVGVGMVVFAEVLGRTLGGRPLLSARRLFRRVAWHR 273
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
VRQIKQLN PI VK EWN GGL++RIEGLRAFLPKAE++ R NFT+LK VGR+++V
Sbjct: 274 VRQIKQLNLPIMVKVFEWNAGGLISRIEGLRAFLPKAEMMRRPRNFTDLKNNVGRQIHVC 333
Query: 350 ITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
ITR +E TN+LI+SE+EAWA LREG LLEGTV+K++PYGAQIRIG++NR GLLHIS +
Sbjct: 334 ITRTDERTNELIISEKEAWAMAYLREGALLEGTVRKLFPYGAQIRIGETNRGGLLHISKI 393
Query: 410 SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
+ ++ SVSD+L GERVK LV+KS PD+I+LSI DLESEPGLF+SDKE
Sbjct: 394 THGQLRSVSDVLKVGERVKALVIKSTAPDRIALSIKDLESEPGLFLSDKE 443
>gi|326520954|dbj|BAJ92840.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 507
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 255/373 (68%), Gaps = 10/373 (2%)
Query: 90 LELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSR 149
L LL+KP P + + + P +ALAP+L FF +V+ ++V +
Sbjct: 71 LHLLDKPFPSPSAPEEDEPEPEAAPAPSTADALAPYLNFF-------QVKGAEADVAATA 123
Query: 150 ESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGAD-LLGTMLTKEVLPL 208
+ G V Y++PKPGD V GVVV G+ LDV+VGA MLTKE P
Sbjct: 124 GKDSSEGGPGTGGRGVIYFDPKPGDLVAGVVVGGDARALDVDVGAGGEPALMLTKEAAPA 183
Query: 209 YDKEMDFLLCDLKKD-AEEFMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVL 266
+E +L CD+ A EF G++G+ + + G PVV GTV+FAEVL
Sbjct: 184 SPEEFAYLACDVASGGAREFAAEGRVGVAVGGVDLKVGRTGKEKCAPVVGVGTVVFAEVL 243
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
GRTL GRPLLS RRLFR++AWHRVRQIKQLN PI+VK +EWN GGLL+RIEGLRAFLPK
Sbjct: 244 GRTLGGRPLLSARRLFRRVAWHRVRQIKQLNVPIKVKISEWNAGGLLSRIEGLRAFLPKP 303
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKI 386
++++R NFT+LK VGR+M+V IT+I+E TN+LI+SE+EAWA L L+EG LLEGTV+K+
Sbjct: 304 QMMTRPRNFTDLKNNVGRQMHVCITKIDERTNELIISEKEAWAMLYLKEGALLEGTVRKL 363
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD 446
+PYGAQIRIG++NRSGLLH+S ++ ++ SVSD L GERVK LV+KS PD+I+LSI D
Sbjct: 364 FPYGAQIRIGETNRSGLLHVSKITHGQLRSVSDALRVGERVKALVIKSTTPDRIALSIRD 423
Query: 447 LESEPGLFVSDKE 459
LESEPGLF+S+KE
Sbjct: 424 LESEPGLFLSNKE 436
>gi|115438028|ref|NP_001043440.1| Os01g0589000 [Oryza sativa Japonica Group]
gi|53792249|dbj|BAD52882.1| 30S ribosomal protein S1-like [Oryza sativa Japonica Group]
gi|113532971|dbj|BAF05354.1| Os01g0589000 [Oryza sativa Japonica Group]
gi|215704693|dbj|BAG94321.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 188/295 (63%), Positives = 222/295 (75%), Gaps = 11/295 (3%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY DL AE
Sbjct: 82 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYR-------ADLPAFAEAA 134
Query: 228 MVR-GKMGIVKDDDA---IAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
R G +G V A G G GR +V GTV+FAEVLGRTLSGRPLLS RRLFR
Sbjct: 135 PPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTLSGRPLLSARRLFR 194
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVG 343
++AWHR RQ+ QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+N FT+LK KVG
Sbjct: 195 RLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKVG 254
Query: 344 RRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGL 403
+ V ITR++E+TNDLI+SE++AW L+EGTLL+G V KI+PYGAQ+RI +NRSGL
Sbjct: 255 CSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPYGAQVRIAGTNRSGL 314
Query: 404 LHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDK 458
LHISN+SR RV SVSD+L E VKVLVVKS PDKI+LSI+DLES PGLF+S+K
Sbjct: 315 LHISNISRGRVLSVSDILKIDEEVKVLVVKSNVPDKIALSISDLESTPGLFLSEK 369
>gi|242057851|ref|XP_002458071.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
gi|241930046|gb|EES03191.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
Length = 426
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 184/311 (59%), Positives = 226/311 (72%), Gaps = 15/311 (4%)
Query: 153 DVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKE 212
D D G D+ Y+PKPGDF +GVVVSG E +LDV VGAD L T+L KE+LPL
Sbjct: 71 DADSASGTDR----RYDPKPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLDRDS 126
Query: 213 MDFLLCDLKKDAEEFMVRGKMGIVK----DDDAIAMSGGSGPGRPVVETGTVLFAEVLGR 268
D + G +G+V DDD A G R +V GTV+FAEVLGR
Sbjct: 127 AD------SPTRQALPGPGSIGVVAGLTVDDDKEARRQKRG-SRTLVAPGTVVFAEVLGR 179
Query: 269 TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
TLSGRPLLS RRLFR++AWHR RQI QL+EPI+VK EWNTGGLLTRIEGLRAFLPK EL
Sbjct: 180 TLSGRPLLSARRLFRRLAWHRARQILQLDEPIQVKIYEWNTGGLLTRIEGLRAFLPKFEL 239
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYP 388
+ R+++FT+LK KVG + V I R++E+TNDLI+SE++AW L+EGTLL+GTV+KI+P
Sbjct: 240 VDRISSFTDLKNKVGCSIRVCIARLDEETNDLIISEKKAWEMTYLKEGTLLQGTVRKIFP 299
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
YGAQ+RI +NRSGLLHISN++R V SVSD+L + VKV+V+KS PDKI+LS ADLE
Sbjct: 300 YGAQVRIAGTNRSGLLHISNITRGNVLSVSDILKIDDEVKVIVIKSNVPDKIALSTADLE 359
Query: 449 SEPGLFVSDKE 459
S PGLF+SD+E
Sbjct: 360 SAPGLFLSDRE 370
>gi|414881608|tpg|DAA58739.1| TPA: hypothetical protein ZEAMMB73_806215 [Zea mays]
gi|414881609|tpg|DAA58740.1| TPA: hypothetical protein ZEAMMB73_806215 [Zea mays]
gi|418207172|gb|AFX62688.1| plastid S1-binding domain protein precursor [Zea mays]
Length = 422
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 228/312 (73%), Gaps = 21/312 (6%)
Query: 153 DVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKE 212
D D G + Y+PKPGDF +GVVVSG E +LDV VGAD L T+L+KE+LPL
Sbjct: 71 DADSASG----TCRRYDPKPGDFAVGVVVSGTEARLDVAVGADRLATLLSKELLPLDRDS 126
Query: 213 MDFLLCDLKKDAEEFMVR-GKMGIVK----DDDAIAMSGGSGPGRPVVETGTVLFAEVLG 267
D + + R G +G+V DDD GS R +V GTV+FAEVLG
Sbjct: 127 SD-------PPTRQALPRLGSIGVVAGPSVDDDR--QKRGS---RTLVAPGTVVFAEVLG 174
Query: 268 RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
RTLSGRPLLS RRLFR++AWHR RQI QLNEPIEVK EWNTGGLLTRIEGLRAFLPK E
Sbjct: 175 RTLSGRPLLSARRLFRRLAWHRARQILQLNEPIEVKIYEWNTGGLLTRIEGLRAFLPKFE 234
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIY 387
L+ R+++FT+LK KVG + V I R++E+TNDLI+SE++AW L+EGTLL+GTV KI+
Sbjct: 235 LVDRISSFTDLKNKVGCSIRVCIARLDEETNDLIISEKKAWEMTYLKEGTLLQGTVCKIF 294
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
PYGA++RI +NRSGLLHISN+SR V SVSD+L + VKV+V+KS PDKI++SIADL
Sbjct: 295 PYGARVRIAGTNRSGLLHISNISRGNVLSVSDILKIDDEVKVIVIKSNVPDKIAVSIADL 354
Query: 448 ESEPGLFVSDKE 459
ES PGLF+SD+E
Sbjct: 355 ESAPGLFLSDRE 366
>gi|326503538|dbj|BAJ86275.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 178/296 (60%), Positives = 225/296 (76%), Gaps = 3/296 (1%)
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADL-LGTMLTKEVLPLYDKEMDFLLCDLKKD-A 224
+++PKPGD V GVVV G+ LDV+VGA MLTKE P +E +L CD+ A
Sbjct: 22 HFDPKPGDLVAGVVVGGDARALDVDVGAGGEPALMLTKEAAPASPEEFAYLACDVASGGA 81
Query: 225 EEFMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
EF G++G+ + + G PVV GTV+FAEVLGRTL GRPLLS RRLFR
Sbjct: 82 REFAAEGRVGVAVGGVDLKVGRTGKEKCAPVVGVGTVVFAEVLGRTLGGRPLLSARRLFR 141
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVG 343
++AWHRVRQIKQLN PI+VK +EWN GGLL+RIEGLRAFLPK ++++R NFT+LK VG
Sbjct: 142 RVAWHRVRQIKQLNVPIKVKISEWNAGGLLSRIEGLRAFLPKPQMMTRPRNFTDLKNNVG 201
Query: 344 RRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGL 403
R+M+V IT+I+E TN+LI+SE+EAWA L L+EG LLEGTV+K++PYGAQIRIG++NRSGL
Sbjct: 202 RQMHVCITKIDERTNELIISEKEAWAMLYLKEGALLEGTVRKLFPYGAQIRIGETNRSGL 261
Query: 404 LHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
LH+S ++ ++ SVSD L GERVK LV+KS PD+I+LSI DLESEPGLF+S+KE
Sbjct: 262 LHVSKITHGQLRSVSDALRVGERVKALVIKSTTPDRIALSIRDLESEPGLFLSNKE 317
>gi|62320614|dbj|BAD95265.1| RIBOSOMAL PROTEIN [Arabidopsis thaliana]
Length = 336
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 188/311 (60%), Positives = 227/311 (72%), Gaps = 33/311 (10%)
Query: 43 FHSFAASFRF-LRSTH-IVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVP 100
F F+ F +R + I FCS++DV V N G+ EE+ELLNKPN +P
Sbjct: 56 FRGFSICREFAVRGAYGIRFCSREDV----------SGVGNGGIVAEEEIELLNKPNPLP 105
Query: 101 ISNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGE 160
S +++S K D++ L PFLKFFKP + E E VS E+
Sbjct: 106 KSE------NEESGKADDDAILEPFLKFFKPEEEGEG-----IESEVSDET--------- 145
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL 220
D+VSVEYY+PKPGDFV+GVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+D+LLCDL
Sbjct: 146 DRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDL 205
Query: 221 KKDAEEFMVRGKMGIVKDDD-AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
K DAEEF+V GKMGIVKDDD + ++ + GRPVVE GTV+FAEVLGRTLSGRPLLS+R
Sbjct: 206 KYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSR 265
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
R FR++AWHRVRQIKQLNEPIEVK TEWNTGGLLTRIEGLRAF+PK EL+ +VN FTELK
Sbjct: 266 RYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELK 325
Query: 340 EKVGRRMYVQI 350
E V + ++ +
Sbjct: 326 ENVKQEFHLPL 336
>gi|357135372|ref|XP_003569284.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like
[Brachypodium distachyon]
Length = 427
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/299 (59%), Positives = 221/299 (73%), Gaps = 16/299 (5%)
Query: 166 EYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAE 225
EYYEPK G++ +GVVVSG E +LDV VGAD L T+L+KE+LPL E+ ++
Sbjct: 73 EYYEPKSGEYAVGVVVSGTEARLDVAVGADRLATLLSKELLPLCRSELP------NGGSQ 126
Query: 226 EFMVR-GKMGIVKDDDAIAMSGGSGP-----GRPVVETGTVLFAEVLGRTLSGRPLLSTR 279
R G +GIV A + G P R +V GTV+FAEVLGRTLSGRPLLS R
Sbjct: 127 AVPPRLGSVGIV----AASAVDGDDPNKKHGARTLVAPGTVVFAEVLGRTLSGRPLLSAR 182
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
RLFR++AWHR QI QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+N FT+LK
Sbjct: 183 RLFRRLAWHRASQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELVDRINTFTDLK 242
Query: 340 EKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSN 399
VGR + V + R++++TND I+SE++AW L+EGTLL+G V+KI+PYGAQ+RI +N
Sbjct: 243 NNVGRSVRVCVIRLDKETNDFIISEKKAWEMTYLKEGTLLQGNVRKIFPYGAQVRITGTN 302
Query: 400 RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDK 458
RSGLLHISN+S+ RV SVSD+L + VKVLV+KS DKI+LSIA+LES PGLF+SDK
Sbjct: 303 RSGLLHISNISQGRVLSVSDVLKIDDEVKVLVIKSNASDKIALSIAELESAPGLFLSDK 361
>gi|218188559|gb|EEC70986.1| hypothetical protein OsI_02640 [Oryza sativa Indica Group]
Length = 361
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 177/281 (62%), Positives = 209/281 (74%), Gaps = 11/281 (3%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY DL AE
Sbjct: 82 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYR-------ADLPAFAEAA 134
Query: 228 MVR-GKMGIVKDDDAI---AMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
R G +G V A G G GR +V GTV+FAEVLGRTLSGRPLLS RRLFR
Sbjct: 135 PPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTLSGRPLLSARRLFR 194
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVG 343
++AWHR RQ+ QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R+N FT+LK KVG
Sbjct: 195 RLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKVG 254
Query: 344 RRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGL 403
+ V ITR++E+TNDLI+SE++AW L+EGTLL+G V KI+PYGAQ+RI +NRSGL
Sbjct: 255 CSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPYGAQVRIAGTNRSGL 314
Query: 404 LHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444
LHISN+SR RV SVSD+L E VKVLVVKS PDKI+LS+
Sbjct: 315 LHISNISRGRVLSVSDILKIDEEVKVLVVKSNVPDKIALSL 355
>gi|224082512|ref|XP_002306723.1| predicted protein [Populus trichocarpa]
gi|222856172|gb|EEE93719.1| predicted protein [Populus trichocarpa]
Length = 296
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 219/304 (72%), Gaps = 23/304 (7%)
Query: 1 MQTPVQACKSFTFTLLNSAPP------LSTCSFV-QNGNAKYPLQQSRKFHSFAASFR-- 51
MQT +Q CKS T +S PP ++ S V QN K P FHSF S
Sbjct: 1 MQTLLQPCKSLTI-FSSSLPPHSNNLVITQSSIVHQNKCPKSPC-----FHSFCTSGTSA 54
Query: 52 ----FLRSTHIVFCSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVAS 107
RS HI CSQ D FDD SS Q PE +++ ++ NEELELLNKP+ V +NG+
Sbjct: 55 KNPPLWRSAHISLCSQNDAFDDFSSTQLPEKAQDDRIQENEELELLNKPSPVVFNNGLDV 114
Query: 108 EVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGED-KVSVE 166
E K+SEKP ++EALAPFLKFFK DS + V E+ + GV E ID+D++ E K++V+
Sbjct: 115 EAVKESEKPGKDEALAPFLKFFKSNDSLDGVSEDDGDSGVVEERIDMDNEDKEARKINVD 174
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEE 226
YY PKPGDFV+GVVVSGNENKLDVN+GADLLGTMLTKEVLPLYDKE +FLLCD KKDA+E
Sbjct: 175 YYNPKPGDFVVGVVVSGNENKLDVNIGADLLGTMLTKEVLPLYDKEFEFLLCDTKKDAKE 234
Query: 227 FMVRGKMGIVKDDDAIAMS-GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKM 285
FMV+GKMGIVKDD +AMS G G G+PVVETGTVLF+EVLGRTLSGRPLLSTRRLFR++
Sbjct: 235 FMVKGKMGIVKDD--VAMSRGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLFRRI 292
Query: 286 AWHR 289
AW R
Sbjct: 293 AWQR 296
>gi|326516488|dbj|BAJ92399.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 426
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 176/297 (59%), Positives = 221/297 (74%), Gaps = 12/297 (4%)
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEE 226
+Y+PK GD+ +G+VVSG E +LDV VGAD L T+LTKE+LPL E F +K
Sbjct: 75 HYDPKSGDYAVGIVVSGTEARLDVAVGADRLATLLTKELLPLCRAE--FPTGGVKPVPPR 132
Query: 227 FMVRGKMGIVK----DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
G +G+++ D++ G+ R +V GTV+FAEVLGRTLSGRPLLS RRLF
Sbjct: 133 ---PGSVGVLEASPMDEETQNQKRGA---RTLVPPGTVVFAEVLGRTLSGRPLLSARRLF 186
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R+++WHR RQI QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R++ FT+LK V
Sbjct: 187 RRLSWHRARQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRISTFTDLKNNV 246
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSG 402
R + V I R++E+TNDLI+SE++AW L+EG LL+G V KI+PYGAQIRI +NRSG
Sbjct: 247 SRCIRVCIIRLDEETNDLIVSEKKAWEMTYLKEGALLKGNVHKIFPYGAQIRITGTNRSG 306
Query: 403 LLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
LLHISN+S+ RV SVSD+L + +KVLV+KS DKI+LSIADLES PGLF+SDKE
Sbjct: 307 LLHISNISQGRVLSVSDILKVDDELKVLVIKSNVSDKIALSIADLESAPGLFLSDKE 363
>gi|115465119|ref|NP_001056159.1| Os05g0535800 [Oryza sativa Japonica Group]
gi|113579710|dbj|BAF18073.1| Os05g0535800 [Oryza sativa Japonica Group]
Length = 592
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 260/392 (66%), Gaps = 23/392 (5%)
Query: 88 EELELLNKPNLVPI-SNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVG 146
+EL LL KP P ++ SE + + EEALAPFLKFF+ + + + ++ + G
Sbjct: 61 DELHLLEKPFPSPSPADEDESESTEAAPALSTEEALAPFLKFFQGKSTEPDEDDAAAGGG 120
Query: 147 VSRESIDVDDKVGEDKVS----------VEYYEPKPGDFVIGVVVSGNENKLDVNVGAD- 195
V++ + V YY+PKPGD +GVVV G+ LD++VGA
Sbjct: 121 GGGGGGYVEEDEEDKGEGSAGAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGG 180
Query: 196 LLGTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIVK-------DDDAIAMSGG 247
ML KE +P+ +E ++L CD+ KDA +F GK+G+V + G
Sbjct: 181 EPALMLAKEAVPMTGEEFEYLACDVASKDAAQFAAEGKVGVVVSGGEGQGEATGGRNGKG 240
Query: 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
G G P + GTV+F EVLGRTL GRPLLS RRLFR++AWHR IKQLN PI+VK EW
Sbjct: 241 RGRGSPALGVGTVVFTEVLGRTLGGRPLLSARRLFRRVAWHR---IKQLNVPIKVKIFEW 297
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
N GGLLTRIEGLRAFLPK E+++R NFT+LK VG++++V ITRI+E N+LI+SE+EA
Sbjct: 298 NAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEA 357
Query: 368 WATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERV 427
WA LREGTLL+GTV+K++PYGAQI IGD+NR GLLH+SN++R ++TSV D+L GE V
Sbjct: 358 WAMTYLREGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGDVLKVGEEV 417
Query: 428 KVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
K +V+KS P +I+LS DLESEPGLF+S+KE
Sbjct: 418 KAIVIKSTAPGRIALSTKDLESEPGLFLSNKE 449
>gi|125553118|gb|EAY98827.1| hypothetical protein OsI_20772 [Oryza sativa Indica Group]
Length = 536
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 200/409 (48%), Positives = 259/409 (63%), Gaps = 37/409 (9%)
Query: 88 EELELLNKPNLVPI-SNGVASEVDKKSEKPDEEEALAPFLKFFKPRDS-------AEEVE 139
+EL LL KP P ++ SE + + EEALAPFLKFF+ + + A
Sbjct: 61 DELHLLEKPFPSPSPADEDESESTEAAPALSTEEALAPFLKFFQGKSTEPDEDDAAAGGG 120
Query: 140 EEGSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGAD-LLG 198
G + + G V YY+PKPGD +GVVV G+ LD++VGA
Sbjct: 121 GGGYVEEDEEDKGEGSAGAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGGEPA 180
Query: 199 TMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIVK-------DDDAIAMSGGSGP 250
ML KE +P+ +E ++L CD+ KDA +F GK+G+V + G G
Sbjct: 181 LMLAKEAVPMTGEEFEYLACDVASKDAAQFAAEGKVGVVVSGGEGQGEATGGRNGKGRGR 240
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQ------------------ 292
G P + GTV+F EVLGRTL GRPLLS RRLFR++AWHRVRQ
Sbjct: 241 GSPALGVGTVVFTEVLGRTLGGRPLLSARRLFRRVAWHRVRQLISISISEKMRPMRKDEA 300
Query: 293 --IKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQI 350
IKQLN PI+VK EWN GGLLTRIEGLRAFLPK E+++R NFT+LK VG++++V I
Sbjct: 301 DTIKQLNVPIKVKIFEWNAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCI 360
Query: 351 TRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS 410
TRI+E N+LI+SE+EAWA LREGTLL+GTV+K++PYGAQI IGD+NR GLLH+SN++
Sbjct: 361 TRIDEKANELIISEKEAWAMTYLREGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNIT 420
Query: 411 RTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
R ++TSV D+L GE VK +V+KS P +I+LS DLESEPGLF+S+KE
Sbjct: 421 RGQLTSVGDVLKVGEEVKAIVIKSTAPGRIALSTKDLESEPGLFLSNKE 469
>gi|222632365|gb|EEE64497.1| hypothetical protein OsJ_19347 [Oryza sativa Japonica Group]
Length = 581
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/297 (57%), Positives = 220/297 (74%), Gaps = 9/297 (3%)
Query: 172 PGDFVIGVVVSGNENKLDVNVGAD-LLGTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMV 229
PG F +GVVV G+ LD++VGA ML KE +P+ +E ++L CD+ KDA +F
Sbjct: 102 PGTFAVGVVVGGDGRTLDIDVGAGGEPALMLAKEAVPMTGEEFEYLACDVASKDAAQFAA 161
Query: 230 RGKMGIVK-------DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 282
GK+G+V + G G G P + GTV+F EVLGRTL GRPLLS RRLF
Sbjct: 162 EGKVGVVVSGGEGQGEATGGRNGKGRGRGSPALGVGTVVFTEVLGRTLGGRPLLSARRLF 221
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
R++AWHRVRQIKQLN PI+VK EWN GGLLTRIEGLRAFLPK E+++R NFT+LK V
Sbjct: 222 RRVAWHRVRQIKQLNVPIKVKIFEWNAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTV 281
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSG 402
G++++V ITRI+E N+LI+SE+EAWA LREGTLL+GTV+K++PYGAQI IGD+NR G
Sbjct: 282 GQQIHVCITRIDEKANELIISEKEAWAMTYLREGTLLQGTVRKLFPYGAQITIGDTNRGG 341
Query: 403 LLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
LLH+SN++R ++TSV D+L GE VK +V+KS P +I+LS DLESEPGLF+S+KE
Sbjct: 342 LLHVSNITRGQLTSVGDVLKVGEEVKAIVIKSTAPGRIALSTKDLESEPGLFLSNKE 398
>gi|218188557|gb|EEC70984.1| hypothetical protein OsI_02634 [Oryza sativa Indica Group]
Length = 408
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/295 (56%), Positives = 201/295 (68%), Gaps = 36/295 (12%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY DL AE
Sbjct: 77 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYR-------ADLPAFAEAA 129
Query: 228 MVR-GKMGIVKD---DDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
R G +G+V + G G GR +V GTV+FAEVLGRTLSGRPLLS RRLFR
Sbjct: 130 PPRPGSVGVVASPASGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTLSGRPLLSARRLFR 189
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVG 343
++AWHR RQ GLRAFLPK EL+ R+N F++LK KVG
Sbjct: 190 RLAWHRARQ-------------------------GLRAFLPKFELMDRINTFSDLKNKVG 224
Query: 344 RRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGL 403
+ V ITR++E+TNDLI+SE++AW L+EGTLL+G V+KI+PYGAQIRI +NRSGL
Sbjct: 225 CSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVRKIFPYGAQIRIAGTNRSGL 284
Query: 404 LHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDK 458
LHISN+SR V SVSD+L + VKVLVVKS PDKI+LSI+DLES PGLF+SDK
Sbjct: 285 LHISNISRGSVLSVSDILKIDDEVKVLVVKSNVPDKIALSISDLESTPGLFLSDK 339
>gi|413946240|gb|AFW78889.1| hypothetical protein ZEAMMB73_339041 [Zea mays]
Length = 513
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/396 (45%), Positives = 245/396 (61%), Gaps = 24/396 (6%)
Query: 83 GLEGNEELELLNKPNLVPISNGVASEVDKKSEKP--DEEEALAPFLKFFKPRDSAEEVEE 140
G G++EL LL KP +P ++ P EEALAPFLKFF+ + + +V
Sbjct: 55 GGSGSDELHLLEKP--LPAVAEDNEAEEELESAPVSSTEEALAPFLKFFQVKSTDPDVGA 112
Query: 141 EGSEVGVSRESI--DVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGAD-LL 197
+ ++ V E+ DV GE VS YY+PKPGDFV GVVV + LDV++G+
Sbjct: 113 DTADGEVPEEASRRDVLSAAGERGVS--YYDPKPGDFVAGVVVRSDGRTLDVDIGSSGEP 170
Query: 198 GTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIV---------KDDDAIAMSGG 247
ML KE P+ +E +L CD+ K A EF G++G+V D +AI G
Sbjct: 171 ALMLAKESAPVPAEEFGYLACDVASKCAAEFAAEGRVGVVVRQFRGGGEGDGEAIIGRNG 230
Query: 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR---RLFRKM-AWHRVRQIKQLNEPIEVK 303
PV+ + + + L R F KM + +IKQLN PI++K
Sbjct: 231 KEKVAPVLRADNITLIYLFPALKGLKLKLLKRGSENGFNKMYGVLKFVEIKQLNVPIKIK 290
Query: 304 FTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363
EWN GLL+RIEGLRAFLPK E+++R NFT+LK KV + M+V ITRI+E+TN+LI+S
Sbjct: 291 IYEWNASGLLSRIEGLRAFLPKPEMMTRPRNFTDLKNKVDQEMHVCITRIDEETNELIIS 350
Query: 364 EREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E+EAWA LREGTLL+GTV+K++PYGAQIRIG++NR GLLHISNM+ ++ SV+D+L
Sbjct: 351 EKEAWAVTCLREGTLLQGTVRKLFPYGAQIRIGETNRGGLLHISNMTHGKLRSVADVLKV 410
Query: 424 GERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
GE VK LV+KS PD+I+LS DLESEPGL +++KE
Sbjct: 411 GETVKALVIKST-PDRIALSTKDLESEPGLLITNKE 445
>gi|357132804|ref|XP_003568018.1| PREDICTED: uncharacterized protein LOC100833069 isoform 2
[Brachypodium distachyon]
Length = 498
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 174/350 (49%), Positives = 226/350 (64%), Gaps = 30/350 (8%)
Query: 120 EALAPFLKFFKPRDSAEEVEEEGSEVGVS-RESIDVDDKVGEDK--VSVEYYEPKPGDFV 176
EALAP+L FF+ + +GSE + R S+D + G+D V YY+PKPGD V
Sbjct: 100 EALAPYLNFFQVKGG------DGSECAAAVRSSVDDASEDGDDAGGRGVIYYDPKPGDLV 153
Query: 177 IGVVVSGNENKLDVNVGADL-LGTMLTKEVLPLYDKEMDFLLCDLKKD---AEEFMVRGK 232
+GVVV G+ LDV+VGA ML KE P+ E+ +L CD+ A EF G+
Sbjct: 154 VGVVVGGDWRALDVDVGAGGEPALMLAKEAAPVSAVELGYLACDVASSGGGASEFAAEGR 213
Query: 233 MGIV---KDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
+G+V ++ A G G PVV + F + L+ ++ H
Sbjct: 214 VGVVVSGREGSVTARRSGKDKGAPVVGINSHHF--------------YSECLYMTVSVHT 259
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
QIKQLN PI VK EWN GGL++RIEGLRAFLPKAE++ R NFT+LK VGR+++V
Sbjct: 260 FVQIKQLNLPIMVKVFEWNAGGLISRIEGLRAFLPKAEMMRRPRNFTDLKNNVGRQIHVC 319
Query: 350 ITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
ITR +E TN+LI+SE+EAWA LREG LLEGTV+K++PYGAQIRIG++NR GLLHIS +
Sbjct: 320 ITRTDERTNELIISEKEAWAMAYLREGALLEGTVRKLFPYGAQIRIGETNRGGLLHISKI 379
Query: 410 SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
+ ++ SVSD+L GERVK LV+KS PD+I+LSI DLESEPGLF+SDKE
Sbjct: 380 THGQLRSVSDVLKVGERVKALVIKSTAPDRIALSIKDLESEPGLFLSDKE 429
>gi|242088619|ref|XP_002440142.1| hypothetical protein SORBIDRAFT_09g026760 [Sorghum bicolor]
gi|241945427|gb|EES18572.1| hypothetical protein SORBIDRAFT_09g026760 [Sorghum bicolor]
Length = 496
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 188/455 (41%), Positives = 255/455 (56%), Gaps = 41/455 (9%)
Query: 20 PPLSTCSFVQNGNAKYPLQQSRKFHSFAASFRFLRSTHIVFCSQKDVFDDLSSAQFPENV 79
PP S S + + P ++ K H + FL S +V SQ + S +
Sbjct: 2 PPHSLVSLLPAASIS-PRRRQAKHHKAPTASHFLFSRRVV--SQPPLHASPSPTSAGGSG 58
Query: 80 ENEGLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEEALAPFLKFFK-----PRDS 134
++EL LL KP+ + A E + + EEALAPFLKFF+ P
Sbjct: 59 SG-----SDELHLLEKPSPTVAEDNEAEEEPEPAPLLSTEEALAPFLKFFQVKSTDPDAG 113
Query: 135 AEEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGA 194
A E ++ V E+ D V YY+PKPGDFV GVVV + LDV++G+
Sbjct: 114 AGIAGEARADGEVPEEASRRDAMSTAGGRGVSYYDPKPGDFVAGVVVRSDGRTLDVDIGS 173
Query: 195 -DLLGTMLTKEVLPLYDKEMDFLLCDLKKD-AEEFMVRGKMGIV--------KDDDAIAM 244
L ML KE P+ +E FL CD+ + A EF G++G+V D++A
Sbjct: 174 GGELALMLAKESAPVPGEEFGFLACDVASERATEFAAEGRVGVVIRQVSAGEGDEEATVG 233
Query: 245 SGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKF 304
G G V+ G+ + + L V +IKQLN PI+VK
Sbjct: 234 RNGKAKGARVLRAGSEDGIDQIYGVLKC-----------------VEKIKQLNVPIKVKI 276
Query: 305 TEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSE 364
EWN GLL+RIEGLRAFLPK E+++R NFT+LK KVG+ M V ITRI++ N+LI+SE
Sbjct: 277 YEWNASGLLSRIEGLRAFLPKPEMMTRPRNFTDLKNKVGQEMRVCITRIDQGNNELIISE 336
Query: 365 REAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
+EAWA LREGTLL+GTV+K++PYGAQIRIG++NR GLLHISNM+ + SV+D+L G
Sbjct: 337 KEAWAVAYLREGTLLQGTVRKLFPYGAQIRIGETNRGGLLHISNMTNGELRSVADVLKVG 396
Query: 425 ERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
+ VK LV+KS PD+I+LS +LESEPGL +++KE
Sbjct: 397 DTVKALVIKST-PDRIALSTKELESEPGLLLTNKE 430
>gi|47900418|gb|AAT39212.1| putative 30S ribosomal protein S1 [Oryza sativa Japonica Group]
Length = 590
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 174/387 (44%), Positives = 239/387 (61%), Gaps = 24/387 (6%)
Query: 88 EELELLNKPNLVPI-SNGVASEVDKKSEKPDEEEALAPFLKFFKPRDSAEEVEEEGSEVG 146
+EL LL KP P ++ SE + + EEALAPFLKFF+ + + + ++ + G
Sbjct: 61 DELHLLEKPFPSPSPADEDESESTEAAPALSTEEALAPFLKFFQGKSTEPDEDDAAAGGG 120
Query: 147 VSRESIDVDDKVGEDKVS----------VEYYEPKPGDFVIGVVVSGNENKLDVNVGAD- 195
V++ + V YY+PKPGD +GVVV G+ LD++VGA
Sbjct: 121 GGGGGGYVEEDEEDKGEGSAGAGAGGRGVVYYDPKPGDLAVGVVVGGDGRTLDIDVGAGG 180
Query: 196 LLGTMLTKEVLPLYDKEMDFLLCDL-KKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPV 254
ML KE +P+ +E ++L CD+ KDA +F GK+G+V +G
Sbjct: 181 EPALMLAKEAVPMTGEEFEYLACDVASKDAAQFAAEGKVGVVVSGGEGQGEA-TGGRNGK 239
Query: 255 VETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQ--IKQLNEPIEVKFTEWNTGGL 312
V+ E L P+ +T +WH + IKQLN PI+VK EWN GGL
Sbjct: 240 GRGRGVISMESYDYELMA-PICTT-------SWHNLYAPAIKQLNVPIKVKIFEWNAGGL 291
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
LTRIEGLRAFLPK E+++R NFT+LK VG++++V ITRI+E N+LI+SE+EAWA
Sbjct: 292 LTRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEAWAMTY 351
Query: 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
LREGTLL+GTV+K++PYGAQI IGD+NR GLLH+SN++R ++TSV D+L GE VK +V+
Sbjct: 352 LREGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGDVLKVGEEVKAIVI 411
Query: 433 KSMFPDKISLSIADLESEPGLFVSDKE 459
KS P +I+LS DLESEPGLF+S+KE
Sbjct: 412 KSTAPGRIALSTKDLESEPGLFLSNKE 438
>gi|326526035|dbj|BAJ93194.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 240
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/170 (67%), Positives = 138/170 (81%)
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
VRQI QL+EPIEVK EWNTGGLLTRIEGLRAFLPK EL+ R++ FT+LK V R + V
Sbjct: 8 VRQIMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRISTFTDLKNNVSRCIRVC 67
Query: 350 ITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
I R++E+TNDLI+SE++AW L+EG LL+G V KI+PYGAQIRI +NRSGLLHISN+
Sbjct: 68 IIRLDEETNDLIVSEKKAWEMTYLKEGALLKGNVHKIFPYGAQIRITGTNRSGLLHISNI 127
Query: 410 SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKE 459
S+ RV SVSD+L + +KVLV+KS DKI+LSIADLES PGLF+SDKE
Sbjct: 128 SQGRVLSVSDILKVDDELKVLVIKSNVSDKIALSIADLESAPGLFLSDKE 177
>gi|168012348|ref|XP_001758864.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690001|gb|EDQ76370.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 750
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 183/313 (58%), Gaps = 30/313 (9%)
Query: 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEE 226
YY PK GD+V+G+V SGN LD+++GA+ LG + K V+PL +C++K + E
Sbjct: 350 YYNPKVGDYVMGIVASGNHGTLDMDIGANKLGHLFWKNVVPLD-------VCNIKDMSGE 402
Query: 227 F---------MVRGKMG---IVKDDDAIAMSGGSGPGRPV-VETGTVLFAEVLGRTLSGR 273
F + G G V D++ + ++ + P+ VE GTVL EV G T SGR
Sbjct: 403 FPDTNSPDSNVTLGPAGGPYFVHDEEVLNLALEA----PMAVELGTVLTMEVKGITPSGR 458
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-- 331
LL R + R+ +W RVRQ+ + N EV+ EW GL+T+IEGLRAFLP L++R
Sbjct: 459 ALLCARSVAREYSWQRVRQMLEYNATFEVQIAEWTPAGLVTKIEGLRAFLPLYYLVNRPP 518
Query: 332 ---VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKK-IY 387
KE VG++ V I+ I+E L++SE++AW + N G L+EG V I
Sbjct: 519 EPSPQGSVSYKEYVGQKFTVMISSIDEKRRSLVISEKKAWMSKNAYIGALVEGIVTNPIQ 578
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
PYG +RI +++ SG+LHISN+SR RV ++S + + GE VK +VV S ++S S ADL
Sbjct: 579 PYGVHLRIKNTDISGVLHISNISRARVDNISRVFSIGEEVKAMVVPSNKQRRLSFSTADL 638
Query: 448 ESEPGLFVSDKEV 460
E E GL + DK+
Sbjct: 639 EIEDGLMLRDKQA 651
>gi|222618762|gb|EEE54894.1| hypothetical protein OsJ_02412 [Oryza sativa Japonica Group]
Length = 402
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/151 (65%), Positives = 120/151 (79%), Gaps = 1/151 (0%)
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
N GL T GLRAFLPK EL+ R+N FT+LK KVG + V ITR++E+TNDLI+SE++A
Sbjct: 184 NYWGLQTD-AGLRAFLPKFELMDRINTFTDLKNKVGCSIRVCITRLDEETNDLIISEKKA 242
Query: 368 WATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERV 427
W L+EGTLL+G V KI+PYGAQ+RI +NRSGLLHISN+SR RV SVSD+L E V
Sbjct: 243 WEMTYLKEGTLLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEV 302
Query: 428 KVLVVKSMFPDKISLSIADLESEPGLFVSDK 458
KVLVVKS PDKI+LSI+DLES PGLF+S+K
Sbjct: 303 KVLVVKSNVPDKIALSISDLESTPGLFLSEK 333
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEM 213
Y+P+PGDF +GVVVSG E +LDV VGAD L T+L KE+LPLY ++
Sbjct: 82 YDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELLPLYRADL 127
>gi|168053672|ref|XP_001779259.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669358|gb|EDQ55947.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 600
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 199/364 (54%), Gaps = 50/364 (13%)
Query: 143 SEVGVSRESIDVDDKVGEDKV--------SVEYYEPKPGDFVIGVVVSGNENKLDVNVGA 194
S VG + S V K D+V S EYY P G V+GVVV GN K+DV++GA
Sbjct: 171 STVGNTCHSFSVLLKTSPDRVEFSKLVDDSFEYYVPVVGHRVVGVVVFGNHAKVDVDIGA 230
Query: 195 DLLGTMLTKEVLPL----YDKEMDFLLCDLKK--DAEEFMVRGKMG--------IVKDDD 240
G + +++LPL D+ L D KK +A E RG +G ++ D++
Sbjct: 231 AQYGQLHMQDLLPLDQLPIDQNKWILADDTKKGDEAGEGNERGGLGTPPRGLPYVIHDEE 290
Query: 241 AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV---------- 290
A P V+ GTVL EV+G+T++G+PLLS R+ +++AW RV
Sbjct: 291 VYAYES---PAPHCVDIGTVLEMEVVGKTMTGKPLLSARKAAQRVAWDRVLQQCDDLFCE 347
Query: 291 -------------RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL--SRVNNF 335
QIK +E IEV+ ++ G++ R+EGLRAFLP E + +
Sbjct: 348 PIFCCLTSGVSWGDQIKDEHESIEVEIVDYGKAGVIARVEGLRAFLPLTEFVIPPDTSKG 407
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRI 395
K+ VGR+++V I+ E ++++SE++AW NL+ G+L +GTV KI YGA ++I
Sbjct: 408 ESHKDYVGRKLWVCISFAREIRGNIVISEKDAWIQRNLKLGSLHDGTVTKIVNYGAYVQI 467
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFV 455
+N G++HISNMS R+ VS++L G++VK++ V+ P K+S S A LE EPGL +
Sbjct: 468 NRTNIGGIIHISNMSTARINRVSNVLKVGDQVKMIAVECPTPGKLSFSTALLEFEPGLML 527
Query: 456 SDKE 459
DKE
Sbjct: 528 RDKE 531
>gi|167999023|ref|XP_001752217.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696612|gb|EDQ82950.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 558
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 155/271 (57%), Gaps = 19/271 (7%)
Query: 135 AEEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGA 194
+EEV+E S S+ S+ VEYY P G V GVVVSGN KLD+++GA
Sbjct: 222 SEEVDETLSRASDSQVSL----------TDVEYYVPICGHRVTGVVVSGNYAKLDMDIGA 271
Query: 195 DLLGTMLTKEVLPLYDKEMD---FLLCDLKKDAEEFMV--RGKMGIVKDDDAIAMSGGSG 249
LG M +E+LPL ++D ++L D + + G ++ D++
Sbjct: 272 AKLGQMHVQEILPLDKFQIDQTSWILADDAGEGGGAGLPPNGHTHVLYDEEVFTYEAPES 331
Query: 250 PGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
P +V+ GTVL EV+G T SGR LLS R+ +++ W+R+ QIK+ +EP E+ T +N
Sbjct: 332 P--LLVDIGTVLDMEVVGITTSGRALLSARKAAQRIEWNRIMQIKEEDEPFEITITGFNK 389
Query: 310 GGLLTRIEGLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
GLL R+EGLRAFLP AEL+++ ++ + VG ++V I E +L+LSE+ A
Sbjct: 390 AGLLARVEGLRAFLPHAELVNQPDISKGENYEPYVGSTLWVSIAFAKEIEGNLVLSEKIA 449
Query: 368 WATLNLREGTLLEGTVKKIYPYGAQIRIGDS 398
W L+ G+L +G V ++YPYGA +++ ++
Sbjct: 450 WIKRRLQVGSLHDGIVAQLYPYGALVKVNET 480
>gi|357443491|ref|XP_003592023.1| 30S ribosomal protein S1 [Medicago truncatula]
gi|355481071|gb|AES62274.1| 30S ribosomal protein S1 [Medicago truncatula]
Length = 397
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 92/116 (79%)
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKI 386
E L R+ E VGRRM+V+ITRI+E N L+LSE+ AW LREGTLL+GTVKKI
Sbjct: 10 EELKRLVRLEHFFENVGRRMFVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDGTVKKI 69
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
+PYGAQI+IG +NRSGLLH+SN++R VTSVSD+L E+VKVLVV+SMFPDKISL
Sbjct: 70 FPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLFVDEKVKVLVVRSMFPDKISL 125
>gi|307154019|ref|YP_003889403.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306984247|gb|ADN16128.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 300
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 26/248 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGTVL-------FAEVLGRTLS 271
+VRGK+ D A GG PG +PV L F + G
Sbjct: 36 VVRGKVIQYTSDGAYVEIGGKSPGFVPLKEASIQPVTNLNECLPLQQEQDFLIISGPDAE 95
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ ++S R+L K AW V++I + + ++V+ T N GG+ +EGLRAF+P++ L+ +
Sbjct: 96 GQLIISRRQLAIKQAWDTVKEISESGQSVQVRVTGTNRGGVTAEVEGLRAFIPRSHLVEK 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L VG+ + +I++D+N L+LS+R+ A A L GTL+EG V KI P
Sbjct: 156 ----EDLDSLVGQLITANFIQIDQDSNKLVLSQRQLVRAAAIGKLTVGTLVEGKVAKIQP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + I + +GLLHI+ +S + S++ + G+ +KVL+++ + ++I+LS L
Sbjct: 212 YGVFVDINGA--TGLLHITQVSGVHIDSLTTIFKIGQSIKVLILEIDEYKNRIALSTKVL 269
Query: 448 ESEPGLFV 455
ES PG V
Sbjct: 270 ESYPGEIV 277
>gi|212723374|ref|NP_001131751.1| uncharacterized protein LOC100193118 [Zea mays]
gi|194692428|gb|ACF80298.1| unknown [Zea mays]
Length = 146
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 74/87 (85%)
Query: 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
L+EGTLL+GTV KI+PYGA++RI +NRSGLLHISN+SR V SVSD+L + VKV+V+
Sbjct: 4 LKEGTLLQGTVCKIFPYGARVRIAGTNRSGLLHISNISRGNVLSVSDILKIDDEVKVIVI 63
Query: 433 KSMFPDKISLSIADLESEPGLFVSDKE 459
KS PDKI++SIADLES PGLF+SD+E
Sbjct: 64 KSNVPDKIAVSIADLESAPGLFLSDRE 90
>gi|218438198|ref|YP_002376527.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 7424]
gi|218170926|gb|ACK69659.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 284
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 26/248 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGTVL-------FAEVLGRTLS 271
+VRGK+ D A GG PG PV L F +
Sbjct: 20 IVRGKVIQYTSDGAYVEIGGKSPGFVPLREASIEPVTNLNDYLPLDQEQDFLIISSADAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS R+L K AW++V++I + ++++ T N GG+ +EGLR F+P++ L+ +
Sbjct: 80 GQLILSRRQLIIKQAWNQVKEIAESGTSVQMRVTGINRGGVTGEVEGLRGFIPRSHLVEK 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L VG+ + +++ D N L+LS+R+ A A L GTL+EG V KI P
Sbjct: 140 ----EDLDSLVGQSITANFIQVDPDNNKLVLSQRQLVRAAAMSQLTIGTLVEGKVAKIQP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + I + +GLLHI+ +S + +++ + G+ +KV++V+ + ++I+LS L
Sbjct: 196 YGVFVDINGA--TGLLHITQVSGVHIDALTTIFKIGQTIKVMIVEIDEYKNRIALSTKVL 253
Query: 448 ESEPGLFV 455
ES PG V
Sbjct: 254 ESYPGEIV 261
>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
Length = 327
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 111/191 (58%), Gaps = 9/191 (4%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS +R+ ++AW R+RQ + + +E + N GG++ +E +R F P ++L
Sbjct: 103 NGDLMLSLKRMELQVAWQRLRQYLEDDVSVEGRVVATNRGGVIVEVECIRGFCPGSQLGQ 162
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA---TLNLREGTLLEGTVKKIY 387
RV F EL + R M ++T ++E+ L+LS + A + G ++EGTV +
Sbjct: 163 RVQTFEEL---LDRTMAFKVTEVDEEKARLMLSNKRVVADERVGGFKVGDVVEGTVISVK 219
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIAD 446
PYGA + IG + SGLLHIS +S R+T+V +L+EG+R+KV+V+ + +++L
Sbjct: 220 PYGAFVDIGGA--SGLLHISQISHDRITNVDKVLSEGDRIKVMVLSQDRERGRVALCTKK 277
Query: 447 LESEPGLFVSD 457
LE PG + D
Sbjct: 278 LEPTPGDMLRD 288
>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 284
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ L+S +R+ K AW +V + + ++ +E K N GG + +EGLRAFLP + L
Sbjct: 85 NGQLLVSIKRIEYKKAWEKVLSMAEEDQILEAKVIAVNRGGAICLVEGLRAFLPGSHLTG 144
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLNLREGTLLEGTVKKIY 387
++ + ++ +G + ++ +N++TN L++S R+A +L G L+ G VK +
Sbjct: 145 QLPD----EDLIGNNLQLKFLEVNQETNKLVVSNRKAVVEQQMADLSRGDLVAGMVKALK 200
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIAD 446
PYGA + +G SGLLHIS +S R+ + +L G +VK +++ +I+LS
Sbjct: 201 PYGAFVEVG--GMSGLLHISQISYDRIDDLEKVLQPGMQVKCMIIDHDKVNGRIALSTKT 258
Query: 447 LESEPGLFVSD 457
LE EPG + D
Sbjct: 259 LEPEPGDMLKD 269
>gi|427711825|ref|YP_007060449.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 6312]
gi|427375954|gb|AFY59906.1| ribosomal protein S1 [Synechococcus sp. PCC 6312]
Length = 339
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 152
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
VN +E VG + ++ ++E+ N L+LS R A + + G ++ GTV+ I P
Sbjct: 153 VNK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVIGTVRGIKP 208
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N +++KV+++ +ISLS L
Sbjct: 209 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDQLKVMIIDLDAERGRISLSTKQL 266
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 267 EPEPGDMVKNPQL 279
>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 411
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 29/265 (10%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + DDD A+ PG P+ L V GR
Sbjct: 68 DEILVDIGAKAEGVVPAREMQSLSDDDRAALK----PGDPL------LVFVVQSEDKEGR 117
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL---- 329
LS R ++ +W R++Q + E IE K +N GGLL ++G+R F+P +++
Sbjct: 118 ATLSIDRARQEKSWRRLQQCYETGEIIEAKVINYNKGGLLVNLDGVRGFVPSSQVSGIGR 177
Query: 330 -SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
S +E+ VG+ + +++ IN + N LILSER+A + L+EG +
Sbjct: 178 GSEAQKQSEMARMVGQTLALKVIEINRNRNRLILSERQAAMDVREGRKGELLSALKEGDV 237
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
EG V + +GA + IG ++ GL+H+S +S +RV S++L G++V+V V+
Sbjct: 238 REGVVTSVCDFGAFVDIGGAD--GLVHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNER 295
Query: 438 DKISLSIADLESEPGLFVSDKEVHI 462
+I+LS+ + EP V ++ HI
Sbjct: 296 KRIALSLKRTQHEPWATVGER-YHI 319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G + +EL SRV + +E+ K G ++ V + I+ + + LS +
Sbjct: 249 GAFVDIGGADGLVHLSELSWSRVKHPSEIL-KPGDKVQVYVLSIDNERKRIALSLKRTQH 307
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E WAT+ R G ++EG V ++ P+GA +RI D GL+H+S M RV D+L E
Sbjct: 308 EPWATVGERYHIGQMVEGVVTQLAPFGAFVRIEDGV-EGLIHVSEMGDGRVQHPRDVLQE 366
Query: 424 GERVKVLVVK 433
G+ V+ +++
Sbjct: 367 GDAVQARIIR 376
>gi|303282543|ref|XP_003060563.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458034|gb|EEH55332.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 343
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 107/181 (59%), Gaps = 9/181 (4%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS R++ + AW+R R+++ +E + + N GGLL +E LR F+P++ + R N
Sbjct: 106 LSVRKIQLEAAWNRCREMQAADEAVSAEVLSVNRGGLLVEVEHLRGFVPQSHIAIRTPNR 165
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYPYGAQ 392
+L +G+++ V+ ++ED N L++S R A ++ L G + +G V+ + PYGA
Sbjct: 166 EDL---IGQKVPVKFLEVDEDKNRLVMSNRLATDVVSGEGLGVGDVCKGIVQAVKPYGAF 222
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
+ +G SGLLHIS +S R+ +V ++L+ G+ +KVL++ K ++SLS LE P
Sbjct: 223 VDVG--GVSGLLHISQISHDRIVAVENVLSPGDELKVLILSKDAERSRLSLSTKKLEPSP 280
Query: 452 G 452
G
Sbjct: 281 G 281
>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
Length = 320
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 134/298 (44%), Gaps = 49/298 (16%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
Y PGD V G V S +++GA T LPL +
Sbjct: 29 YRFNPGDIVKGTVFSLEPRGALIDIGAK------TAAYLPLQE----------------- 65
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
M I + DD + G E T+ F + G+ LS RR+ AW
Sbjct: 66 -----MSINRVDDPTEVLG---------EGDTLDFFILSDENEEGQLTLSIRRIEYMKAW 111
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEK-VGRRM 346
RVR+++ ++ + K N GG L RIEGLR F+P + L +R E KE+ +G +
Sbjct: 112 ERVRKLQTEDQTVRAKIFAVNRGGALVRIEGLRGFIPGSHLSTR-----EPKEELIGEEL 166
Query: 347 YVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGL 403
++ ++E+ N L+LS R A L G ++ G V+ I PYGA I IG SGL
Sbjct: 167 PLKFLEVDEERNRLVLSHRRALVERRMNKLEAGQVVIGRVRGIKPYGAFIDIG--GVSGL 224
Query: 404 LHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKEV 460
LHIS +S + + + N G+ VKV+V+ +ISLS LE PG DK+
Sbjct: 225 LHISEISHDHIETPHSVFNVGDEVKVMVIDLDAERGRISLSTKQLEETPGAMTQDKQA 282
>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
Length = 287
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ L+S RR+ + AW +V + +E E + N GG + +EGLRAFLP + L
Sbjct: 85 NGQLLVSIRRIQYREAWDKVIAKQDSDEVFEAECVSVNRGGAIFLVEGLRAFLPGSHLTG 144
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIY 387
R+ + + VG+ + ++ +N++ N L++S R A + E G +++G VK +
Sbjct: 145 RLPD----DDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVEEQMAELSRGDVIDGIVKALK 200
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIAD 446
PYGA + +G SGLLHIS +S R+T + +L G+++K +++ +I+LS
Sbjct: 201 PYGAFVEVG--GMSGLLHISQISMDRITDLEQVLQPGQKIKCMIIDHDKVNGRIALSTKT 258
Query: 447 LESEPGLFVSD 457
LE EPG + D
Sbjct: 259 LEPEPGDMIKD 269
>gi|428224572|ref|YP_007108669.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427984473|gb|AFY65617.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 323
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 268 EPEPGDMVKNPQL 280
>gi|428775694|ref|YP_007167481.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428689973|gb|AFZ43267.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 299
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 25/251 (9%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGR-PVVET---GTVLFAEVLG------------RTLS 271
+VRGK +D A GG PG P+ E GT F +++ +
Sbjct: 38 VVRGKAVNYDNDVAYVDIGGKSPGLLPLKEADIAGTTRFEDIIPLDEELEFLVIREQNAD 97
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W + + + +P+E++ T N GG+ I GLRAF+P++ LL+
Sbjct: 98 GQVTLSRRQLQEQRVWETLEEYQTERKPVEMQVTGSNRGGVKGEIMGLRAFVPRSHLLAA 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIYP 388
N L + +G+ + + + + L+LS+REA A + G+L+EG V + P
Sbjct: 158 DN----LDDLIGQTVTGLLIEVKPEDKRLVLSQREAAKADAMGQIIAGSLIEGKVVNLKP 213
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I + + +GLLHI +S+ RV S+ ++L GE +KV++V + +I+LS +L
Sbjct: 214 YGAFIELA-AGVTGLLHIKQVSQKRVESLEEVLTVGEMIKVMIVDVDEYQGRIALSTKEL 272
Query: 448 ESEPGLFVSDK 458
E PG + +K
Sbjct: 273 EHYPGQMLENK 283
>gi|334121254|ref|ZP_08495327.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333455342|gb|EGK83994.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 371
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V ++E+
Sbjct: 268 EPEPGAMVKNREL 280
>gi|428316075|ref|YP_007113957.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
gi|428239755|gb|AFZ05541.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
Length = 364
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V ++E+
Sbjct: 268 EPEPGAMVKNREL 280
>gi|428201607|ref|YP_007080196.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427979039|gb|AFY76639.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 326
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRANVFATNRGGALVRIEGLRGFIPGSHISAR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA---TLNLREGTLLEGTVKKIY 387
E KE VG+ + ++ ++E+ N L+LS R A L G ++ GTV+ I
Sbjct: 155 -----EAKEDLVGQELPLKFLEVDEERNRLVLSHRRALVERKMHGLEVGQVVTGTVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDANRGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE EPG + ++++
Sbjct: 268 LEPEPGDMLKNRQI 281
>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 369
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V ++++
Sbjct: 268 EPEPGAMVKNRDL 280
>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
Length = 398
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIAD 446
YGA I IG SGLLHIS +S + + + N + VKV+++ + D +ISLS
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMII-DLDADRGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE EPG V + E+
Sbjct: 267 LEPEPGAMVKNPEM 280
>gi|397620579|gb|EJK65790.1| hypothetical protein THAOC_13316, partial [Thalassiosira oceanica]
Length = 372
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ L+S RR+ + AW +V + +E + + N GG + +EGLRAFLP + L
Sbjct: 126 NGQLLVSVRRIEYRQAWDKVVAKRDTDEVFDAECVSVNRGGAIFLVEGLRAFLPGSHLTG 185
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIY 387
R+ + ++ VG+ + ++ +N++ N L++S R A +L G +++G VK +
Sbjct: 186 RLPD----EDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVETQMESLSRGDVIDGLVKALK 241
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIAD 446
PYGA + +G SGLLHIS +S R+ + +L G+++K +++ + +I+LS
Sbjct: 242 PYGAFVEVG--GMSGLLHISQISMDRINDLEAVLQPGQKIKCMIIDHDKANGRIALSTKT 299
Query: 447 LESEPGLFVSDKE 459
LE EPG + D E
Sbjct: 300 LEPEPGDMIRDPE 312
>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
Length = 375
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + E+
Sbjct: 268 EPEPGAMVKNPEM 280
>gi|423063754|ref|ZP_17052544.1| RNA binding S1 domain protein [Arthrospira platensis C1]
gi|406714603|gb|EKD09764.1| RNA binding S1 domain protein [Arthrospira platensis C1]
Length = 384
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + E+
Sbjct: 268 EPEPGAMVKNPEM 280
>gi|376006629|ref|ZP_09783861.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375324995|emb|CCE19614.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 375
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + E+
Sbjct: 268 EPEPGAMVKNPEM 280
>gi|428212888|ref|YP_007086032.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001269|gb|AFY82112.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 425
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKE 459
E EPG V +++
Sbjct: 268 EPEPGDMVKNRQ 279
>gi|428769893|ref|YP_007161683.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684172|gb|AFZ53639.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 300
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 69/307 (22%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-----------DLLGTMLTKEVLPLYDKEMDFL 216
Y K GD V G V + + + V++G D G+ KEVLPL ++E DF+
Sbjct: 31 YHFKQGDVVRGKVFEYSSDGVYVDIGGKSPGFVPQTEVDWRGSSNVKEVLPL-EQEFDFV 89
Query: 217 LCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLL 276
I+K+ DA G+ L
Sbjct: 90 ------------------IIKEQDA-----------------------------EGQVKL 102
Query: 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFT 336
S R+LF AW +++I++ +++ T N GG+ ++GL+ F+PK+ L +
Sbjct: 103 SRRQLFIDQAWDNLKEIEEKGAIVQMLVTGVNRGGVFGEVQGLKGFIPKSHLTQK----E 158
Query: 337 ELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYPYGAQI 393
+L+ + + + I ++++ N L+L++R + A L+E ++ G + KI PYG +
Sbjct: 159 DLETLIDQTVDTNILQLDQKENKLVLTQRNIARSSALSQLKENEVVAGKIAKIQPYGVFV 218
Query: 394 RIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPG 452
G SGLLHI +S +V ++ GE VKV++++ F ++ISLS LE+ PG
Sbjct: 219 DFG--GVSGLLHIKQISEGKVNALESFFQIGEEVKVVIMEIDTFKNRISLSTKILETYPG 276
Query: 453 LFVSDKE 459
F+ +KE
Sbjct: 277 EFLENKE 283
>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
Length = 414
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVSEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + E+
Sbjct: 268 EPEPGAMVKNPEL 280
>gi|409990465|ref|ZP_11273835.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
gi|409938680|gb|EKN79974.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
Length = 320
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + E+
Sbjct: 268 EPEPGAMVKNPEM 280
>gi|255085236|ref|XP_002505049.1| predicted protein [Micromonas sp. RCC299]
gi|226520318|gb|ACO66307.1| predicted protein [Micromonas sp. RCC299]
Length = 387
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS R++ + AW+R R+++ +E + N GGLL +E LR F+P++ + R
Sbjct: 149 GSLTLSVRKIQLEAAWNRCREMQANDEAVNSVVLSVNRGGLLVEVEHLRGFVPQSHIAMR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
V N EL +G+ + V+ ++E+ N L++S R A ++ L G + +G V+ + P
Sbjct: 209 VPNRDEL---IGQSVPVKFLEVDEEKNRLVMSNRLATDVVSGEGLGVGDVCKGVVQAVKP 265
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADL 447
YGA + +G SGLLHIS +S R+ +V ++L G+ +KVL++ K ++SLS L
Sbjct: 266 YGAFVDVG--GVSGLLHISQISHDRIVAVENVLAPGDELKVLILSKDAERSRLSLSTKKL 323
Query: 448 ESEPG 452
E PG
Sbjct: 324 EPSPG 328
>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 343
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG ++ ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S+ + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|67922621|ref|ZP_00516127.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855549|gb|EAM50802.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 313
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 38/291 (13%)
Query: 199 TMLTKEVLPLYDKEMDFLLCDLKKDAEEF--------MVRGKMGIVKDDDAIAMSGGSGP 250
T++T + ++ F + D + +++ +VRGK+ DD A GG
Sbjct: 8 TIMTSDSAAPKGSQISFSMDDFTQALDDYDYKCEKGQVVRGKVIQHSDDGAYVDIGGKSA 67
Query: 251 G-----------RPVVETGTVL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQ 292
G RP + +L F + + G+ LS R+L K AW V +
Sbjct: 68 GFVPINEVDLESRP--DLAEILPIDEEKEFIVISEQNADGQVKLSRRQLQLKEAWENVEE 125
Query: 293 IKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352
I ++ ++++ T N GG++ +EGL+ F+P++ L+ + +L VG+ +
Sbjct: 126 IAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLMEK----EDLNGLVGQLLTATFLE 181
Query: 353 INEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
+N+ TN L+LS+R A A L G L+ G V +I PYG I + SGLLHI+ +
Sbjct: 182 VNQSTNKLVLSQRRAIAAARIDKLEVGQLVSGKVARIQPYG--IFVDFEGVSGLLHITQV 239
Query: 410 SRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKE 459
S +RV ++ + + +KV+++ + ++I+LS LE+ PG + + E
Sbjct: 240 SGSRVDDLNHVFKYNQEIKVMILSIDEYKNRIALSTKILENHPGEIIENLE 290
>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 343
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG ++ ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S+ + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|416391978|ref|ZP_11685808.1| SSU ribosomal protein S1p [Crocosphaera watsonii WH 0003]
gi|357263726|gb|EHJ12695.1| SSU ribosomal protein S1p [Crocosphaera watsonii WH 0003]
Length = 304
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 30/254 (11%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-----------RPVVETGTVL-------FAEVLGRT 269
+VRGK+ DD A GG G RP + +L F + +
Sbjct: 36 VVRGKVIQHSDDGAYVDIGGKSAGFVPINEVDLESRP--DLAEILPIDEEKEFIVISEQN 93
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
G+ LS R+L K AW V +I ++ ++++ T N GG++ +EGL+ F+P++ L+
Sbjct: 94 ADGQVKLSRRQLQLKEAWENVEEIAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLM 153
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKI 386
+ +L VG+ + +N+ TN L+LS+R A A + + G L+ G V +I
Sbjct: 154 EK----EDLNGLVGQLLTATFLEVNQSTNKLVLSQRRAIAAARMDKLEVGQLVSGKVARI 209
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIA 445
PYG I + SGLLHI+ +S +RV ++ + + +KV+++ + ++I+LS
Sbjct: 210 QPYG--IFVDFEGVSGLLHITQVSGSRVDDLNHVFKYNQEIKVMILSIDEYKNRIALSTK 267
Query: 446 DLESEPGLFVSDKE 459
LE+ PG + + E
Sbjct: 268 ILENHPGEIIENLE 281
>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
Length = 378
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 118/211 (55%), Gaps = 9/211 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 220
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 221 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 280
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-MFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 281 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
Query: 452 GLFVSDKEVHIIFLFILLFNKQYSVWFLVHL 482
G + + ++ + + F K + ++F V +
Sbjct: 339 GDMIRNPKLVFEKVTLFPFKKTFPIFFYVSI 369
>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++KE + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----KIKEDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVIGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|308801060|ref|XP_003075311.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
gi|116061865|emb|CAL52583.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
Length = 250
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS RR+ AW R R+ + + + + N GGLL +E LR F+P++ + R N
Sbjct: 36 LSVRRMELAKAWDRCREAQAEDAALTGEVLSVNRGGLLVEVEKLRGFVPQSHIGIRTLNR 95
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYPYGAQ 392
EL VG+++ + ++E+ N L+LS R A ++ L G ++EG V+ + PYGA
Sbjct: 96 EEL---VGQQLPFKFIEVDEEKNRLVLSHRLATDMVSAEGLEVGDVVEGMVQAVKPYGAF 152
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
+ +G +SGLLHIS +S R+ +V ++L+ G+R+KVLV+ K ++SLS LE
Sbjct: 153 VDVG--GQSGLLHISQISHERIVAVENVLSAGDRIKVLVMSKDAERGRLSLSTKKLEQNH 210
Query: 452 G 452
G
Sbjct: 211 G 211
>gi|428171104|gb|EKX40024.1| ribosomal protein S1, chloroplastic [Guillardia theta CCMP2712]
Length = 404
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G +G+ LS R+L AW RVRQI+ + I + N GG L EGLR
Sbjct: 163 FQIISGEDENGQVRLSIRKLEFARAWERVRQIQAEDCTIMAEILSINRGGALINFEGLRG 222
Query: 322 FLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---LNLREGTL 378
FLP + TE + VG + ++ +++ N L++S R A +NL G L
Sbjct: 223 FLPGSHA---PQGMTE--DTVGTMIPLKFLEVDQAKNRLVVSNRRAVVETKLVNLEPGQL 277
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFP 437
+ G V+ I PYGA + IG SGLLHIS +S ++ VS +L EG+ +K +++ +
Sbjct: 278 VTGIVRSIKPYGAFVDIG--GISGLLHISQISHDHISDVSKVLQEGQEIKAMILTQDKDK 335
Query: 438 DKISLSIADLESEPGLFVSDKEV 460
+ SLS LE+EPG + + E+
Sbjct: 336 GRFSLSTKTLEAEPGDMIRNPEM 358
>gi|434398471|ref|YP_007132475.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428269568|gb|AFZ35509.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 296
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW V +I + + ++V+ T N GG+ IEGLR F+P++ L R
Sbjct: 92 GQVTLSRRQLQLQAAWDNVAEIAESGKSVQVRITGVNKGGVTGEIEGLRGFIPRSHLEQR 151
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYP 388
N L VG+ + +N D L+LS+R +A A + +GTL+EG + + P
Sbjct: 152 DN----LDSLVGQLLTATFLEVNPDDKKLVLSQRGAIQAKAMAKVEQGTLVEGKIVSLKP 207
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + + + +GLLHI +S T + S++ + G+ +KV++ + + +++SLSI L
Sbjct: 208 YGVFVDLDGA--TGLLHIKEVSNTHINSLTTIFKIGQIIKVVIAEVDEYKNRLSLSIKVL 265
Query: 448 ESEPGLFVSD 457
E PG V +
Sbjct: 266 EEYPGEIVEN 275
>gi|427702896|ref|YP_007046118.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427346064|gb|AFY28777.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 358
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 141 GQLTLSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 200
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 201 KAK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKP 256
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 257 YGAFIDIG--GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKAL 314
Query: 448 ESEPGLFVSDKE 459
E EPG +SD +
Sbjct: 315 EPEPGDMLSDPQ 326
>gi|434392818|ref|YP_007127765.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
gi|428264659|gb|AFZ30605.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
Length = 330
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|145343076|ref|XP_001416292.1| Plastid ribosomal protein S1, imported to chloroplast, small
ribosomal subunit [Ostreococcus lucimarinus CCE9901]
gi|144576517|gb|ABO94585.1| Plastid ribosomal protein S1, imported to chloroplast, small
ribosomal subunit [Ostreococcus lucimarinus CCE9901]
Length = 339
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS RR+ AW R R+ + + + N GGLL +E LR F+P++ + R
Sbjct: 123 GCMTLSVRRMELAKAWDRCREAQADDAALTGDVLSVNRGGLLVEVEKLRGFVPQSHIGVR 182
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
N EL +G+++ + ++E+ N L+LS R A ++ L G ++EG V+ + P
Sbjct: 183 TLNREEL---IGQQLPFKFIEVDEEKNRLVLSHRLATDMVSAEGLEVGDVVEGMVQAVKP 239
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADL 447
YGA + +G +SGLLHIS +S R+ +V ++L+ G+R+KVLV+ K ++SLS L
Sbjct: 240 YGAFVDVG--GQSGLLHISQISHERIVAVENVLSPGDRIKVLVMSKDAEKGRLSLSTKKL 297
Query: 448 ESEPG 452
E G
Sbjct: 298 EQNHG 302
>gi|427717194|ref|YP_007065188.1| 30S ribosomal protein S1P [Calothrix sp. PCC 7507]
gi|427349630|gb|AFY32354.1| SSU ribosomal protein S1P [Calothrix sp. PCC 7507]
Length = 361
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|443311823|ref|ZP_21041447.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
gi|442778223|gb|ELR88492.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
Length = 331
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ +G + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EDLLGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + D+++
Sbjct: 268 EPEPGDMIKDRQL 280
>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 392
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ V + + ++ ++ED N L+LS R A + G ++ G+V+ I P
Sbjct: 154 AAK----EDLVAQELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDADRGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG ++++EV
Sbjct: 268 EPEPGDMINNREV 280
>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 343
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 383
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|427710313|ref|YP_007052690.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427362818|gb|AFY45540.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 358
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|440684481|ref|YP_007159276.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
gi|428681600|gb|AFZ60366.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
Length = 359
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 375
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|434404514|ref|YP_007147399.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428258769|gb|AFZ24719.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 378
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 354
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 140 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 199
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 200 KPK----EELVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 255
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 256 YGAFIDIG--GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKAL 313
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 314 EPEPGDMLTDPQ 325
>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 343
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
Length = 369
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 152 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 211
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 212 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 267
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 268 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 325
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 326 EPEPGDMLTDPQ 337
>gi|443327239|ref|ZP_21055869.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442793178|gb|ELS02635.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 299
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 30/264 (11%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFAEV-- 265
MD L+K EF +V+GK+ + A GG PG P ET + ++
Sbjct: 16 MDDFAKALEKYDYEFAKGQIVKGKVVQYDSEGAYIDIGGKCPGFVPTRETALQVVEDIAD 75
Query: 266 ---LG----------RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
LG + G+ LS R++ + AW +V +I + ++ +++ T N GG+
Sbjct: 76 IIPLGEEFEFLIIQEQNADGQVTLSRRQMQLQDAWDKVTEISESSKSTQIRVTGVNKGGI 135
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---A 369
+EGLR F+P++ L R N L+ +G+ + V +N + L+LS+R A A
Sbjct: 136 TGDVEGLRGFIPRSHLRQRDN----LESLIGQLLTVTFIEVNPEKRKLVLSQRNAMRAEA 191
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
L EG L+ GT+ + PYGA + +G +GLLH+ +S TR S+ ++L G+ +KV
Sbjct: 192 LTRLVEGALVTGTIVNMKPYGAFVDLG--GVTGLLHVKEVSGTRTDSLENILQIGQEIKV 249
Query: 430 LVVK-SMFPDKISLSIADLESEPG 452
++ + + +++SLS E PG
Sbjct: 250 VIAQVDEYNNRLSLSTKVFEEYPG 273
>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 341
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIGGV--SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|428298667|ref|YP_007136973.1| 30S ribosomal protein S1P [Calothrix sp. PCC 6303]
gi|428235211|gb|AFZ01001.1| SSU ribosomal protein S1P [Calothrix sp. PCC 6303]
Length = 356
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 155 KPK----EELVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 211 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 268
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 269 EPEPGDMIKNRDL 281
>gi|428306344|ref|YP_007143169.1| 30S ribosomal protein S1P [Crinalium epipsammum PCC 9333]
gi|428247879|gb|AFZ13659.1| SSU ribosomal protein S1P [Crinalium epipsammum PCC 9333]
Length = 391
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 104/192 (54%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A +N L G ++ G+V+ I P
Sbjct: 154 KPK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKE 459
E EPG + +++
Sbjct: 268 EPEPGDMIKNRD 279
>gi|428773714|ref|YP_007165502.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428687993|gb|AFZ47853.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 306
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 114/193 (59%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L+ AW + ++++ + +++ T N GG++ +I+GLRAF+P++ L+ +
Sbjct: 99 GQVKLSRRQLYIDQAWDNLTEVQEKGKLVQMLVTGVNRGGVIGQIDGLRAFIPRSHLIEK 158
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYP 388
NF EL V + + I +++ N ++L++R ++ A L+E +++G V K+ P
Sbjct: 159 -ENFEEL---VDQTLPANILQLDRGQNKIVLTQRNIAKSSAMAQLQEHQVVQGKVVKLQP 214
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + G +GLLHI +S + SVS + GE +KV+V++ ++ISLS L
Sbjct: 215 YGVFVDFG--GVAGLLHIKQISGGHIDSVSHIFKVGEEIKVVVMEIDTVKNRISLSTKVL 272
Query: 448 ESEPGLFVSDKEV 460
E+ PG F+ +E+
Sbjct: 273 ETYPGEFLEKREL 285
>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
Length = 359
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 142 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 201
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 202 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 257
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 258 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 315
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 316 EPEPGDMLTDPQ 327
>gi|422301965|ref|ZP_16389329.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
gi|389788948|emb|CCI15121.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
Length = 330
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIGGV--SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDK 458
LE EPG + ++
Sbjct: 267 LEPEPGDMLKNR 278
>gi|427732442|ref|YP_007078679.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427368361|gb|AFY51082.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 344
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIGGV--SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|425463814|ref|ZP_18843144.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
gi|389829070|emb|CCI29843.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
Length = 330
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIGGV--SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDK 458
LE EPG + ++
Sbjct: 267 LEPEPGDMLKNR 278
>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 385
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 124/213 (58%), Gaps = 23/213 (10%)
Query: 254 VVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G+ + A+VL + SG LS RR + AW R++Q+ + EPIEV+ + GGL
Sbjct: 60 VVSVGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGL 119
Query: 313 LTRIEGLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----- 365
+ + G+RAF+P A L+ R V N + K G+++ ++ ++ N LILS R
Sbjct: 120 VADV-GVRAFIP-ASLVDRHFVENLEQFK---GQKLRAKVVEVDPHKNKLILSRRAVLEE 174
Query: 366 --EAWATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
EA A L+ G ++EGTV+++ +GA + +G ++ GL+HIS +S + V S++
Sbjct: 175 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGAD--GLVHISELSFSHVNHPSEV 232
Query: 421 LNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ EG+RVKV V++ + P+ +ISLSI EP
Sbjct: 233 VREGDRVKVRVLR-VDPEAGRISLSIKAALPEP 264
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 20/191 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEP---IEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
+LS R + + + R R++ + +P IE G + G + +EL S
Sbjct: 165 ILSRRAVLEEESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGADGLVHISELSFS 224
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL--NLREGTLLEGTVK 384
VN+ +E+ + G R+ V++ R++ + + LS + E W T G +++G V+
Sbjct: 225 HVNHPSEVVRE-GDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFHPGDVVQGVVR 283
Query: 385 KIYPYGA--QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
++ +GA ++R G GL+H+S +S V SD+L G+ V V V+ S+ P+ +I
Sbjct: 284 RVVDFGAFVELRPG---LEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVL-SVDPERKRI 339
Query: 441 SLSIADLESEP 451
SLS+ D S+P
Sbjct: 340 SLSMRD-SSQP 349
>gi|425438866|ref|ZP_18819204.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|425445803|ref|ZP_18825823.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|425454554|ref|ZP_18834284.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
gi|389716744|emb|CCH99046.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|389734101|emb|CCI02187.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|389804745|emb|CCI16018.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
Length = 330
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIGGV--SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDK 458
LE EPG + ++
Sbjct: 267 LEPEPGDMLKNR 278
>gi|443322096|ref|ZP_21051130.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
gi|442788220|gb|ELR97919.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
Length = 344
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSLRRIEYMRAWERVRQLQTEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+ KE VG+ + ++ ++E+ N L+LS R A +N L G ++ GTV+ I
Sbjct: 155 -----QAKEDLVGQELPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVIGTVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHEHIETPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE EPG + DK +
Sbjct: 268 LEPEPGDMLKDKNI 281
>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 367
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 151 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 210
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 211 KPK----EELVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKP 266
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 267 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 324
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 325 EPEPGDMLTDPQ 336
>gi|390442071|ref|ZP_10230090.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
gi|389834605|emb|CCI34216.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
Length = 358
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 122 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 181
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 182 -----EAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIK 236
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 237 PYGAFIDIGGV--SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 294
Query: 447 LESEPGLFVSDK 458
LE EPG + ++
Sbjct: 295 LEPEPGDMLKNR 306
>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|425437110|ref|ZP_18817537.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|425449492|ref|ZP_18829331.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|425471179|ref|ZP_18850039.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440754860|ref|ZP_20934062.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|389677991|emb|CCH93122.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|389763766|emb|CCI09762.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|389882968|emb|CCI36602.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440175066|gb|ELP54435.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
Length = 330
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIGGV--SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDK 458
LE EPG + ++
Sbjct: 267 LEPEPGDMLKNR 278
>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
Length = 351
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 134 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 193
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 194 KAK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKP 249
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 250 YGAFIDIG--GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKAL 307
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 308 EPEPGDMLTDPQ 319
>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383321905|ref|YP_005382758.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325074|ref|YP_005385927.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490958|ref|YP_005408634.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436225|ref|YP_005650949.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814321|ref|YP_007450773.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500385|sp|P73530.1|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273257|dbj|BAK49744.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271224|dbj|BAL28743.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274394|dbj|BAL31912.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277564|dbj|BAL35081.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958070|dbj|BAM51310.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451780290|gb|AGF51259.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 328
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 152
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L ++ G+V+ I
Sbjct: 153 -----EAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIK 207
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 208 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQ 265
Query: 447 LESEPGLFVSDKEV 460
LE EPG + D+++
Sbjct: 266 LEPEPGAMLKDRDL 279
>gi|425442739|ref|ZP_18822976.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9717]
gi|389716148|emb|CCH99589.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9717]
Length = 285
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L +G+ + +I+++ N L+LS+RE A A L G LL GTV K+ P
Sbjct: 140 ----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTVVKLQP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + G +GLLH ++ S G+ +KV+V + + ++ISLS L
Sbjct: 196 YGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVVAEIDEYKNRISLSTKIL 253
Query: 448 ESEPG 452
E+ PG
Sbjct: 254 EAHPG 258
>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 385
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 124/213 (58%), Gaps = 23/213 (10%)
Query: 254 VVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G+ + A+VL + SG LS RR + AW R++Q+ + EPIEV+ + GGL
Sbjct: 60 VVSVGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGL 119
Query: 313 LTRIEGLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----- 365
+ + G+RAF+P A L+ R V N + K G+++ ++ ++ N LILS R
Sbjct: 120 VADV-GVRAFIP-ASLVDRHFVENLEQFK---GQKLRAKVIEVDPQKNKLILSRRAVLEE 174
Query: 366 --EAWATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
EA A L+ G ++EGTV+++ +GA + +G ++ GL+HIS +S + V S++
Sbjct: 175 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGAD--GLVHISELSFSHVNHPSEV 232
Query: 421 LNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ EG+RVKV V++ + P+ +ISLSI EP
Sbjct: 233 VREGDRVKVRVLR-VDPEAGRISLSIKAALPEP 264
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 20/191 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEP---IEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
+LS R + + + R R++ + +P IE G + G + +EL S
Sbjct: 165 ILSRRAVLEEESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGADGLVHISELSFS 224
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL--NLREGTLLEGTVK 384
VN+ +E+ + G R+ V++ R++ + + LS + E W T + G +++G V+
Sbjct: 225 HVNHPSEVVRE-GDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 283
Query: 385 KIYPYGA--QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
++ +GA ++R G GL+H+S +S V SD+L G+ V V V+ S+ P+ +I
Sbjct: 284 RVVDFGAFVELRPG---LEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVL-SVDPERKRI 339
Query: 441 SLSIADLESEP 451
SLS+ D S+P
Sbjct: 340 SLSMRD-SSQP 349
>gi|434389320|ref|YP_007099931.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428020310|gb|AFY96404.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 339
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ G+V+ I P
Sbjct: 154 KAK----EELVNEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKE 459
E EPG + +++
Sbjct: 268 EPEPGDMIKNRD 279
>gi|425459139|ref|ZP_18838625.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443654187|ref|ZP_21131250.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389823195|emb|CCI28787.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443333859|gb|ELS48397.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIGGV--SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDK 458
LE EPG + ++
Sbjct: 267 LEPEPGDMLKNR 278
>gi|428210328|ref|YP_007094681.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428012249|gb|AFY90812.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 356
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQNEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++ED N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVSEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|352096607|ref|ZP_08957434.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351676257|gb|EHA59411.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 366
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 148 GQLSLSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 207
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 208 KPK----EELVAGFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 263
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 264 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 321
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 322 EPEPGDMLTDPQ 333
>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 321
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSAVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
V ++ VG + ++ ++E+ N L+LS R A + + G ++ GTV+ I P
Sbjct: 154 VTK----EDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E E G V + ++
Sbjct: 268 EPEAGDMVKNPQL 280
>gi|166363378|ref|YP_001655651.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
gi|166085751|dbj|BAG00459.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
Length = 293
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 83 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 142
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 143 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 198
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ +KV+V + + ++ISL
Sbjct: 199 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVVAEIDEYKNRISL 256
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 257 STKILEAHPG 266
>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
Length = 434
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 11/184 (5%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R ++S R + K++W R++QI+ + + N GGL +IE L+AFLP ++L +
Sbjct: 180 RFIVSLREMHIKLSWERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFSQLAGGL 239
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYG 390
N + GR + V++ ++E+ L++S R+A A L G+++ GTV+ I PYG
Sbjct: 240 NQ----ENLTGRELPVKVLEVDEEQKRLVVSHRKALAENQATLGIGSVVVGTVQTIKPYG 295
Query: 391 AQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
A I +G +GLLH+S +S R+T+V ++L+ G+++KV+V+ S D +ISLS LE
Sbjct: 296 AFIDLG--GLTGLLHVSQISHDRITTVENVLSPGDKLKVMVL-SHDKDRGRISLSTKKLE 352
Query: 449 SEPG 452
PG
Sbjct: 353 PTPG 356
>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
Length = 438
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 11/184 (5%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R ++S R + K++W R++QI+ + + N GGL +IE L+AFLP ++L +
Sbjct: 184 RFIVSLREMHIKLSWERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFSQLAGGL 243
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYG 390
N + GR + V++ ++E+ L++S R+A A L G+++ GTV+ I PYG
Sbjct: 244 NQ----ENLTGRELPVKVLEVDEEQKRLVVSHRKALAENQATLGIGSVVVGTVQTIKPYG 299
Query: 391 AQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
A I +G +GLLH+S +S R+T+V ++L+ G+++KV+V+ S D +ISLS LE
Sbjct: 300 AFIDLG--GLTGLLHVSQISHDRITTVENVLSPGDKLKVMVL-SHDKDRGRISLSTKKLE 356
Query: 449 SEPG 452
PG
Sbjct: 357 PTPG 360
>gi|126654692|ref|ZP_01726226.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126623427|gb|EAZ94131.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 304
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K AW V +I ++ ++++ T N GG++ +EGL+ F+P++ LL +
Sbjct: 96 GQVKLSRRQLQLKEAWENVGEIAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLLEK 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYP 388
+L VG+ + +N TN L+LS+R+A A L G L+ G V +I P
Sbjct: 156 ----EDLNALVGQMLTATFLEVNPSTNKLVLSQRKAIAAARMDKLEAGQLVSGKVSRIQP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + + SGLLHI+ +S +RV ++ + + +KV+++ + ++I+LS L
Sbjct: 212 YG--VFVDFEGVSGLLHITQVSGSRVDDLNHIFKYNQDIKVMILSIDEYKNRIALSTKIL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENYPG 274
>gi|411117376|ref|ZP_11389863.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713479|gb|EKQ70980.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 331
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + +V
Sbjct: 268 EPEPGDMVKNPQV 280
>gi|358248430|ref|NP_001239880.1| uncharacterized protein LOC100812847 [Glycine max]
gi|255635364|gb|ACU18035.1| unknown [Glycine max]
Length = 412
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 107/181 (59%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R L +AW R RQ++ + ++ K N GG++ +EGLR F+P LS+++
Sbjct: 163 VLSLRSLQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVP----LSQIST 218
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ ++E + + + ++ ++E+ + L+LS R+A A L G+++ G+V+ + PYGA
Sbjct: 219 NSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAF 278
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RVT +S +L G+ +KV+++ ++SLS LE P
Sbjct: 279 IDIGGIN--GLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 336
Query: 452 G 452
G
Sbjct: 337 G 337
>gi|428314208|ref|YP_007125185.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428255820|gb|AFZ21779.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 339
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A + G ++ G+V+ I P
Sbjct: 155 KPK----EDLVGEELQLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 211 YGAFIDIGGV--SGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 268
Query: 448 ESEPGLFVSDKE 459
E EPG +++++
Sbjct: 269 EPEPGDMINNRD 280
>gi|414079272|ref|YP_007000696.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413972551|gb|AFW96639.1| 30S ribosomal protein S1 [Anabaena sp. 90]
Length = 355
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 KPK----EDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 268 EPEPGDMIKNRDL 280
>gi|87302523|ref|ZP_01085340.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
gi|87282867|gb|EAQ74824.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
Length = 403
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 28/236 (11%)
Query: 246 GGSGPG-RPVVETGTVLFAEVLGRTLSGRPL---------------LSTRRLFRKMAWHR 289
GG PG P E G + + R G+P+ +S R L + +W +
Sbjct: 151 GGKAPGFMPKAEAGLGVIGNLKERFPKGQPVEVLVTREQNADGMVTISARALALRQSWEK 210
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
V+Q++ + ++VK + +N GG+ +EGLR F+P+++L + N+ ++ VG V
Sbjct: 211 VKQLEAAGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQNGENH----EQLVGTSFAVA 266
Query: 350 ITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHI 406
+N DT L+LSE+ A + L E G L++G V + PYG + +G SGLLH
Sbjct: 267 FLEVNADTRKLVLSEKRAASASLLAELEVGQLVDGQVVSVKPYGFFVDLG--GVSGLLHQ 324
Query: 407 SNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPGLFVSDKEV 460
S+++ + + + ++GER+K LV + + P +I+L+ A LE++PG ++ K+
Sbjct: 325 SSITGVHLRDIREAFSQGERLKALVTQ-IDPSRGRIALNTALLETQPGELLTAKDT 379
>gi|425472173|ref|ZP_18851024.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9701]
gi|389881815|emb|CCI37679.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9701]
Length = 285
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQMRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 135 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 190
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ +KV+V + + ++ISL
Sbjct: 191 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVVAEIDEYKNRISL 248
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 249 STKILEAHPG 258
>gi|428223760|ref|YP_007107857.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427983661|gb|AFY64805.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 302
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RRL W R+ +++ NE I V+ + N GG+ +GLR F+P+++L+ R
Sbjct: 96 GQVTLSVRRLELNRVWERLAEMQTNNETIAVRVSGVNKGGVTADAQGLRGFIPRSQLVER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+L +G+ + V++ +N +TN L+LS R+A ++ + G L+EG V + P
Sbjct: 156 ----EDLDSLIGKTLTVKLLEVNRETNKLVLSHRQAAQAASIGQFEIGQLVEGKVVSLKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + +G + +GLLHI +S+ ++S+ + G+ +KV++ + +ISLS L
Sbjct: 212 FGLFVDLGGT--TGLLHIKQISQNYISSLQAHFSVGQAIKVVITDLDEWQGRISLSTRVL 269
Query: 448 ESEPG 452
ES PG
Sbjct: 270 ESYPG 274
>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 355
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 138 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 197
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 198 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 253
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 254 YGAFIDIG--GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKAL 311
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 312 EPEPGDMLTDPQ 323
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
N + G +++GTV I P G+ I IG + + + + +S RV S+SD+L GE + +
Sbjct: 72 NFKPGDVVKGTVFAIEPKGSMIDIG-AKTAAFMPMQEVSINRVESISDVLEPGEEREFFI 130
Query: 432 VKSMFPD-KISLSIADLE 448
+ D +++LSI +E
Sbjct: 131 LSEENEDGQLTLSIRRIE 148
>gi|312898940|ref|ZP_07758328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
micronuciformis F0359]
gi|310620102|gb|EFQ03674.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
micronuciformis F0359]
Length = 660
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 154/337 (45%), Gaps = 68/337 (20%)
Query: 136 EEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYE-PKPGDFVIGVVVSGNENKLDVNVGA 194
E+++ EG+EV +S E +D D Y E PK GD V G V+S N++ V++G
Sbjct: 272 EDLQAEGTEV-MSEELLDQYD----------YEENPKKGDVVTGTVISVNDDAAYVSIGT 320
Query: 195 DLLGTMLTKEV-LPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRP 253
+ KE+ +P +K DF
Sbjct: 321 KAEAVLPKKEMAVPAPEKASDF-------------------------------------- 342
Query: 254 VVETGTVLFAEVLGRTLS-GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
V+ G L E+ G ++S R+ + W VR + +E +E E N GL
Sbjct: 343 -VQVGQELTVEIANNIKEEGSIVVSLVRMKKVEDWKEVRAAFEADELVECVGKETNKAGL 401
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS-------ER 365
+ I+ LR F+P ++ V L VG V++ ++E N L+LS ER
Sbjct: 402 VVAIKSLRGFIPLSQ--GDVRFVKSLDYLVGETFTVKVIDMDEHKNRLVLSRKAVLEVER 459
Query: 366 E---AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
E A + EG+++EGTV K+ PYGA I +G GLLHIS++S R+ +V D+L
Sbjct: 460 EKKRAEVLKTIEEGSVVEGTVVKVMPYGAFIDLG--GVEGLLHISDISWKRINAVEDVLE 517
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
GE+V+VLV K ++ISLS+ L+ P + +K
Sbjct: 518 VGEKVEVLVQKFDEERNRISLSMKALQKNPWIVAVEK 554
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ L +++ R+N ++ E VG ++ V + + +E+ N + LS ++
Sbjct: 487 GAFIDLGGVEGLLHISDISWKRINAVEDVLE-VGEKVEVLVQKFDEERNRISLSMKALQK 545
Query: 366 EAW--ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W A G +++G VKK+ P+GA + I D GLLH+S ++ R V DL+
Sbjct: 546 NPWIVAVEKFEVGDVVKGEVKKLLPFGAILAI-DPELQGLLHVSELTDKRGAVVKDLIAV 604
Query: 424 GERVKVLVVKSMFPD----KISLSIADLESE 450
G+ VL VK + D KISLS+ +E +
Sbjct: 605 GD---VLDVKIIGIDTDKKKISLSVVAIEED 632
>gi|16330820|ref|NP_441548.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383322562|ref|YP_005383415.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325731|ref|YP_005386584.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491615|ref|YP_005409291.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436882|ref|YP_005651606.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814978|ref|YP_007451430.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500386|sp|P74142.1|RS1B_SYNY3 RecName: Full=30S ribosomal protein S1 homolog B
gi|1653313|dbj|BAA18228.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273914|dbj|BAK50401.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271881|dbj|BAL29400.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275051|dbj|BAL32569.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278221|dbj|BAL35738.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407961822|dbj|BAM55062.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7613]
gi|451780947|gb|AGF51916.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 305
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 26/247 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFAEVLG---------------RTLSG 272
V GK+ ++ GG PG PV E G AE+ + G
Sbjct: 32 VHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDSAWDFLVTSEQNDEG 91
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+ LS R+L + +W + ++++ + +E+ T N GG++ +EGLR F+P++ L+ +
Sbjct: 92 QVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKD 151
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYPY 389
N + VG+ + I N+D N L+L++R +A + + G + EG V KI PY
Sbjct: 152 N----MDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPY 207
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G + I +GLLH+S +S TRV S++ L G+ + V V + + ++ISLS LE
Sbjct: 208 GVFVEI--EGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILE 265
Query: 449 SEPGLFV 455
+ PG V
Sbjct: 266 TYPGELV 272
>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 305
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 87 GQLSLSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 146
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 147 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 202
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 203 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 260
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 261 EPEPGDMLTDPQ 272
>gi|354568686|ref|ZP_08987849.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353539940|gb|EHC09420.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 337
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 155 KPK----EDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 211 YGAFIDIGGV--SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 268
Query: 448 ESEPGLFVSDKEV 460
E EPG + ++++
Sbjct: 269 EPEPGDMIKNRDL 281
>gi|443327874|ref|ZP_21056481.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442792485|gb|ELS01965.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 364
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 155 -----EAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVVGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++E+
Sbjct: 268 LEPESGDMLKNREL 281
>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
Length = 330
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 111 GQLTLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 170
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 171 KAK----EELVSDFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 226
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 227 YGAFIDIGGV--SGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKAL 284
Query: 448 ESEPGLFVSD 457
E EPG ++D
Sbjct: 285 EPEPGDMLTD 294
>gi|254424866|ref|ZP_05038584.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
gi|196192355|gb|EDX87319.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
Length = 304
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 29/280 (10%)
Query: 201 LTKEVLPLYDKEMDFLLCDLKKD---AEEFMVRGKMGIVKDDDAIAMSGGSG----PGRP 253
LT E+ PL+ E DF ++D + ++ GK+ + D A GG P +
Sbjct: 7 LTWEISPLFSAE-DFAKALEQQDYQFSRGSVITGKVETHESDGAYVDIGGKSAAFLPTKE 65
Query: 254 VVETGTVLFAEVL------------GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIE 301
+L E+L + +G+ ++S R + K W R+R+ ++ + +E
Sbjct: 66 ASIDSDILLEEILPIGTERKFLIIRDQDANGQLVISIRAMEIKELWERLRERQENGDVLE 125
Query: 302 VKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLI 361
V + N GG+ + GLRAF+P++ L RV + L +G + ++E+ N L+
Sbjct: 126 VTISGSNKGGVTADVSGLRAFIPRSHLARRVEDLDTL---MGATINAAFLEVDEEKNKLL 182
Query: 362 LSER---EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
LSER A A +L +G L+EGT+ + P+GA + G + SGLLHI +S++ ++++
Sbjct: 183 LSERIAARATAMSSLTKGELIEGTIASLKPFGAFVDFGGA--SGLLHIKQISKSYISALG 240
Query: 419 DLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSD 457
D+ G+ +K +V+ +I+LS LE PG + D
Sbjct: 241 DVFKVGDPIKAVVLNIDEQRGRIALSTQVLEKYPGEILKD 280
>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
Length = 346
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLREEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE EPG + +++V
Sbjct: 267 LEPEPGDMLKNRDV 280
>gi|359459159|ref|ZP_09247722.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 325
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ +G + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 ATK----EDLIGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 268 EPEPGDMVKNPQL 280
>gi|440754892|ref|ZP_20934094.1| S1 RNA binding domain protein [Microcystis aeruginosa TAIHU98]
gi|440175098|gb|ELP54467.1| S1 RNA binding domain protein [Microcystis aeruginosa TAIHU98]
Length = 285
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L +G+ + +I+++ N L+LS+RE A A L G LL GTV K+ P
Sbjct: 140 ----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTVVKLQP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + G +GLLH ++ S G+ ++V+V + + ++ISLS L
Sbjct: 196 YGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISLSTKIL 253
Query: 448 ESEPG 452
E+ PG
Sbjct: 254 EAHPG 258
>gi|443669233|ref|ZP_21134468.1| S1 RNA binding domain protein [Microcystis aeruginosa DIANCHI905]
gi|159026257|emb|CAO86406.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330475|gb|ELS45188.1| S1 RNA binding domain protein [Microcystis aeruginosa DIANCHI905]
Length = 293
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 28 IVRGRVDQHTSDGAYIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 87
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 88 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 147
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L +G+ + +I+++ N L+LS+RE A A L G LL GTV K+ P
Sbjct: 148 ----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTVVKLQP 203
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + G +GLLH ++ S G+ ++V+V + + ++ISLS L
Sbjct: 204 YGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISLSTKIL 261
Query: 448 ESEPG 452
E+ PG
Sbjct: 262 EAHPG 266
>gi|425459775|ref|ZP_18839261.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9808]
gi|389827691|emb|CCI20878.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9808]
Length = 287
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAYIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L +G+ + +I+++ N L+LS+RE A A L G LL GTV K+ P
Sbjct: 140 ----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTVVKLQP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + G +GLLH ++ S G+ ++V+V + + ++ISLS L
Sbjct: 196 YGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISLSTKIL 253
Query: 448 ESEPG 452
E+ PG
Sbjct: 254 EAHPG 258
>gi|425464130|ref|ZP_18843452.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9809]
gi|389833884|emb|CCI21164.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9809]
Length = 293
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 83 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 142
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 143 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 198
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ +KV+V + + ++ISL
Sbjct: 199 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVVAEIDEYKNRISL 256
Query: 443 SIADLESEPG 452
S E+ PG
Sbjct: 257 STKIFEAHPG 266
>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 331
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 155 -----EAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVVGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDALKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE EPG + ++++
Sbjct: 268 LEPEPGDMLKNRDL 281
>gi|425452688|ref|ZP_18832503.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
7941]
gi|389765385|emb|CCI08684.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
7941]
Length = 285
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAEVL------------GRTLS 271
+VRG++ D A GG P R + + AE L G+
Sbjct: 20 IVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAEALPIGAEFDFLITRGQDAE 79
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++ L+ +
Sbjct: 80 GQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHLIEK 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
+L +G+ + +I+++ N L+LS+RE A A L G LL GTV K+ P
Sbjct: 140 ----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTVVKLQP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + G +GLLH ++ S G+ ++V+V + + ++ISLS L
Sbjct: 196 YGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISLSTKIL 253
Query: 448 ESEPG 452
E+ PG
Sbjct: 254 EAHPG 258
>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
Length = 403
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 135/261 (51%), Gaps = 28/261 (10%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + ++D A+ G ++L V GR
Sbjct: 70 DEILVDIGAKAEGVVPAKEMQSLSEEDRAALKPGD----------SLLVFVVQSEDKEGR 119
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--LSR 331
LS R ++ +W R++Q + E IE + +N GGLL ++G+R F+P +++ +SR
Sbjct: 120 ATLSIDRARQEKSWRRLQQCYETGEVIEARVVNYNKGGLLVNLDGVRGFVPSSQVSGISR 179
Query: 332 VNNF---TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
++ +E+ VG+ + +++ IN + N LILSER+A + L+EG +
Sbjct: 180 GSDTQKQSEMARMVGQTLMLKVIEINRNRNRLILSERQAAMDMREGRKGELLSALKEGDV 239
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
EG V + +GA + IG ++ GL+H+S +S +R+ ++L G++V+V V+
Sbjct: 240 REGIVTSVCDFGAFVDIGGAD--GLVHLSEISWSRIKHPGEVLKPGDKVQVYVLSIDNER 297
Query: 438 DKISLSIADLESEPGLFVSDK 458
+I+LS+ + EP V ++
Sbjct: 298 KRIALSLKRTQHEPWATVGER 318
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G + +E+ SR+ + E+ K G ++ V + I+ + + LS +
Sbjct: 251 GAFVDIGGADGLVHLSEISWSRIKHPGEVL-KPGDKVQVYVLSIDNERKRIALSLKRTQH 309
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E WAT+ R G ++EG V ++ P+GA +RI D GL+H+S M RV D+L E
Sbjct: 310 EPWATVGERYQIGQMVEGVVTQLAPFGAFVRIEDGV-EGLIHVSEMGDGRVQHPRDVLQE 368
Query: 424 GERVKVLVVK 433
G+ V+ +++
Sbjct: 369 GDVVQARIIR 378
>gi|172036568|ref|YP_001803069.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|354553347|ref|ZP_08972654.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|171698022|gb|ACB51003.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|353555177|gb|EHC24566.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 302
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 34/272 (12%)
Query: 212 EMDFLLCDLKKDAEEF--------MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVL- 261
++ F + D K +++ ++RGK+ DD A GG G P+ E
Sbjct: 12 QISFSMDDFSKALDQYDYKCEKGQVIRGKVIQHTDDGAFVDIGGKSAGFVPINEVDLQSR 71
Query: 262 --FAEVL------------GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
AE+L + G+ LS R+L K AW V + ++ ++++ T
Sbjct: 72 PNLAEILPLDEEREFLVISEQNAEGQVKLSRRQLQLKEAWENVAESAEMGHSVQMRVTRT 131
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
N GG++ +EGL+ F+P++ LL + +L VG+ + +N TN L+LS+R+A
Sbjct: 132 NKGGVVGEVEGLQGFIPRSHLLEK----EDLNSLVGQLLTATFLEVNPSTNKLVLSQRKA 187
Query: 368 WATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
A L G L+ G V +I PYG + + SGLLHI+ +S +RV ++ L
Sbjct: 188 IAAARMDKLEAGQLVTGKVSRIQPYG--VFVDFEGVSGLLHITQVSGSRVDDLNHLFKYN 245
Query: 425 ERVKVLVVK-SMFPDKISLSIADLESEPGLFV 455
+ +KV+++ + ++I+LS LE+ PG +
Sbjct: 246 QDIKVMILSIDEYKNRIALSTKILENYPGEMI 277
>gi|425438129|ref|ZP_18818538.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9432]
gi|389676730|emb|CCH94262.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9432]
Length = 293
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 83 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 142
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 143 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 198
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ ++V+V + + ++ISL
Sbjct: 199 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISL 256
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 257 STKILEAHPG 266
>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 325
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ +G + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 154 ATK----EDLIGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIGGV--SGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 268 EPEPGDMVKNPQL 280
>gi|425456073|ref|ZP_18835784.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9807]
gi|389802925|emb|CCI18094.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9807]
Length = 285
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 135 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 190
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ ++V+V + + ++ISL
Sbjct: 191 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISL 248
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 249 STKILEAHPG 258
>gi|425446442|ref|ZP_18826446.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9443]
gi|389733348|emb|CCI02879.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9443]
Length = 285
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 135 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 190
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ ++V+V + + ++ISL
Sbjct: 191 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISL 248
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 249 STKILEAHPG 258
>gi|422303041|ref|ZP_16390396.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9806]
gi|389792049|emb|CCI12194.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9806]
Length = 285
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 135 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 190
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ ++V+V + + ++ISL
Sbjct: 191 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISL 248
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 249 STKILEAHPG 258
>gi|427418503|ref|ZP_18908686.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425761216|gb|EKV02069.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 340
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQNEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++E+ N L+LS R A +N L+ G ++ G V+ + P
Sbjct: 154 KPK----EDLVGEALPLKFLEVDEERNRLVLSHRRALVERKMNGLQVGEVVIGAVRGLKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + +LN + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPNTVLNVNDEIKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 268 EPEPGDMVKNPDI 280
>gi|428770655|ref|YP_007162445.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684934|gb|AFZ54401.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 346
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L R+EGLR F+P + + ++
Sbjct: 95 GQLTLSIRRIEYMRAWQRVRQLQEEDATVYSNVFATNRGGALVRVEGLRGFIPGSHISAK 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+ KE VG+ + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 155 -----DTKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE EPG + ++E+
Sbjct: 268 LEPEPGDMLKNREL 281
>gi|390439916|ref|ZP_10228280.1| 30S ribosomal protein S1 homolog B [Microcystis sp. T1-4]
gi|389836686|emb|CCI32404.1| 30S ribosomal protein S1 homolog B [Microcystis sp. T1-4]
Length = 285
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G+ G+ LS R+L + AW VR+I + + ++++ T N GG+ +EGL+ F+P++
Sbjct: 75 GQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRS 134
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTV 383
L+ + +L +G+ + +I+++ N L+LS+RE A A L G LL GTV
Sbjct: 135 HLIEK----NDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAISQLAVGKLLSGTV 190
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
K+ PYG + G +GLLH ++ S G+ ++V+V + + ++ISL
Sbjct: 191 VKLQPYGVFVDCG--GVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISL 248
Query: 443 SIADLESEPG 452
S LE+ PG
Sbjct: 249 STKILEAHPG 258
>gi|133872|sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
Full=CS1; Flags: Precursor
gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
Length = 411
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 108/181 (59%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R++ ++AW R RQ++ + ++ K N GG++ +EGLR F+P S++++
Sbjct: 162 ILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVP----FSQISS 217
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ + L++S R+A A L G+++ GTV+ + PYGA
Sbjct: 218 KSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 277
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 278 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 335
Query: 452 G 452
G
Sbjct: 336 G 336
>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
Length = 361
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 144 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 203
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ V + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 204 KPK----EDLVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 259
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 260 YGAFIDIG--GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKAL 317
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 318 EPEPGDMLTDPQ 329
>gi|434400436|ref|YP_007134440.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428271533|gb|AFZ37474.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 332
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L RIEGLR F+P + + ++
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAK 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 155 -----EAKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVRGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 268 LEPEAGDMLKNRDL 281
>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
MIT 9313]
Length = 367
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ G V+ I P
Sbjct: 209 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 323 EPEPGDMLTDPQ 334
>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9303]
Length = 367
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A + G ++ G V+ I P
Sbjct: 209 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 323 EPEPGDMLTDPQ 334
>gi|158334623|ref|YP_001515795.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158304864|gb|ABW26481.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 289
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ +G+ LS RRL K W ++ +++ ++ ++V T N GG+ +EGLR
Sbjct: 74 FLIIKGQDANGQVTLSIRRLELKHLWTKLLELQSQSQSVQVTITGVNKGGVTADVEGLRG 133
Query: 322 FLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTL 378
F+P++ LL R N L+ ++G ++ V ++ D L+LS R A + + E G L
Sbjct: 134 FIPRSHLLDRDN----LEGQIGSQLTVTFLEVDPDRKKLVLSNRMAEQSSRIGELEIGQL 189
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP- 437
+ GTV + P+GA I++ +GLLHI +S+ V ++S +L GE +K +V+ + P
Sbjct: 190 VSGTVSDLKPFGAFIKL--DGLTGLLHIKEVSQNFVPNLSAVLKIGEPIKAIVL-DLDPG 246
Query: 438 -DKISLSIADLESEPGLFVSDKE 459
++SLS LE+ PG V E
Sbjct: 247 RGRVSLSTKVLENRPGEIVDSME 269
>gi|225432062|ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
Length = 410
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + +AW R RQ++ + ++ K N GG++ +EGLR F+P S++++
Sbjct: 161 ILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVP----FSQISS 216
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
T +E + + + V+ ++E+ + L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 217 KTTAEELLDKELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 276
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 277 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 334
Query: 452 G 452
G
Sbjct: 335 G 335
>gi|427737703|ref|YP_007057247.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427372744|gb|AFY56700.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 442
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
++ VG + ++ ++E+ N L+LS R A + G ++ GTV+ I P
Sbjct: 155 KPK----EDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 211 YGAFIDIG--GVSGLLHISEISHEHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQL 268
Query: 448 ESEPGLFVSDKE 459
E EPG + +++
Sbjct: 269 EPEPGDMIKNRD 280
>gi|384135335|ref|YP_005518049.1| RNA binding S1 domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289420|gb|AEJ43530.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 392
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 23/213 (10%)
Query: 254 VVETGTVLFAEVLGRTL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G+ + A+VL + SG LS RR + AW R++++ + EPIEV+ + GGL
Sbjct: 67 VVSVGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQRLLESGEPIEVEIRDVVKGGL 126
Query: 313 LTRIEGLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----- 365
+ + G+RAF+P A L+ R V N + K G+++ ++ ++ N LILS R
Sbjct: 127 VADV-GVRAFIP-ASLVDRHFVENLEQFK---GQKLRAKVIEVDPQKNKLILSRRAVLEE 181
Query: 366 --EAWATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
EA A L+ G ++EGTV+++ +GA + +G ++ GL+HIS +S + V S++
Sbjct: 182 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGAD--GLVHISELSFSHVNHPSEV 239
Query: 421 LNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ EG+RVKV V++ + P+ +ISLSI EP
Sbjct: 240 VREGDRVKVRVLR-VDPEAGRISLSIKAALPEP 271
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 20/191 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEP---IEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
+LS R + + + R R++ + +P IE G + G + +EL S
Sbjct: 172 ILSRRAVLEEESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGADGLVHISELSFS 231
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL--NLREGTLLEGTVK 384
VN+ +E+ + G R+ V++ R++ + + LS + E W T + G +++G V+
Sbjct: 232 HVNHPSEVVRE-GDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 290
Query: 385 KIYPYGA--QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
++ +GA ++R G GL+H+S +S RV SD+L G+ V V V+ S+ P+ +I
Sbjct: 291 RVLDFGAFVELRPG---LEGLVHVSQISNERVDKPSDVLQPGQEVTVRVL-SVDPERKRI 346
Query: 441 SLSIADLESEP 451
SLS+ D S+P
Sbjct: 347 SLSMRD-SSQP 356
>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
Length = 330
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 152
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
VN +E VG + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 153 VNK----EELVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKP 208
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N ++VKV+++ +ISLS L
Sbjct: 209 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDQVKVMIIDLDAERGRISLSTKQL 266
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 267 EPEPGDMVKNPQL 279
>gi|30692346|ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 416
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 220
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 221 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 280
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 281 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
Query: 452 G 452
G
Sbjct: 339 G 339
>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
Length = 416
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 220
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 221 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 280
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 281 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
Query: 452 G 452
G
Sbjct: 339 G 339
>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
Length = 443
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 116/205 (56%), Gaps = 20/205 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS R ++ W R++++ + IE + +N GGLL ++G+R F+P +++++
Sbjct: 105 AGQAILSIDRARQEKTWRRLQEVFEAGGVIEAEVVNYNKGGLLVNLDGIRGFVPASQVVA 164
Query: 331 -----RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW--------ATL--NLRE 375
V+ ++ VG+R+ ++I IN N LILSER+A A L LRE
Sbjct: 165 IRGGDEVSKQADMARMVGQRLKLKIIEINRHRNRLILSERQAVQEQRDAMKAQLIETLRE 224
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G G V I +G + IG ++ GL+H+S +S TRV S++L G+ V V+V+ S+
Sbjct: 225 GETRRGRVTSIADFGVFVDIGGAD--GLVHLSEISWTRVKHPSEVLRVGDEVDVMVL-SV 281
Query: 436 FPD--KISLSIADLESEPGLFVSDK 458
P+ KI+LSI + EP + V+ +
Sbjct: 282 NPEQRKIALSIRRTQPEPWMQVASQ 306
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---- 365
G+ I G + +E+ +RV + +E+ +VG + V + +N + + LS R
Sbjct: 239 GVFVDIGGADGLVHLSEISWTRVKHPSEVL-RVGDEVDVMVLSVNPEQRKIALSIRRTQP 297
Query: 366 EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E W + + G ++ GT+ ++ +GA R+ + GL+H+S ++ RV +++L E
Sbjct: 298 EPWMQVASQFQVGQVVRGTITQLASFGAFARLQEGV-EGLIHVSELAGWRVEHPNEVLQE 356
Query: 424 GERVKVLVVK 433
G+ V V V++
Sbjct: 357 GDDVIVRVIR 366
>gi|357112501|ref|XP_003558047.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like
[Brachypodium distachyon]
Length = 401
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + + +AW R RQ++ + I K N GG++ +EGL+AF+P S+V++
Sbjct: 155 ILSLQSIQQDLAWERCRQLQAEDVVITGKVIGGNKGGVVALVEGLKAFVP----FSQVSS 210
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
T E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 211 KTTADELLDKEIPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 270
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 271 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 328
Query: 452 G 452
G
Sbjct: 329 G 329
>gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 448
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +VR +++ + I+VK +N GG+ +EGLR F+P+++L N+
Sbjct: 242 ISARALALRQSWEKVRALEKEGKVIQVKVNGFNHGGITCDVEGLRGFVPRSQLQEGENH- 300
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N DT L+LSE++A NL G L+EG V I PYG
Sbjct: 301 ---EALVGKTLGVAFLEVNPDTRKLVLSEKKAATAALFQNLEVGQLVEGQVVAIKPYGLF 357
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ ++ + ++ +G+RVK L+ + + P +I+L+ A LE +
Sbjct: 358 VDLG--GISGLLHHSVITGGQMRDLREVFGQGDRVKALITE-LDPGRGRIALNTALLEGQ 414
Query: 451 PGLFVSDKE 459
PG + +++
Sbjct: 415 PGELLIERD 423
>gi|411116936|ref|ZP_11389423.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713039|gb|EKQ70540.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 300
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 47/289 (16%)
Query: 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEF 227
YE + G V G VVS + N + V++GA L + +EV KE+ +L + + EF
Sbjct: 28 YEFQKGQIVRGKVVSYDTNGVYVDIGAKSLAFVPEQEVSIKGVKELSAVLP--QDEEAEF 85
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
+ IV++ DA G+ LS R+L + AW
Sbjct: 86 L------IVREQDA-----------------------------DGQVTLSLRQLEIRKAW 110
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMY 347
R+ +I+ N+ + V+ T N GG+ ++G+R F+P++ L+ R N L+ V +
Sbjct: 111 DRLAEIRDSNQSLTVRVTGTNKGGVTVDVQGVRGFIPRSHLVERDN----LEALVKTTLT 166
Query: 348 VQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLL 404
I +N++ L+LS R A ++ L G L+EGTV I P+G + + + SGLL
Sbjct: 167 ATIIELNQEMGKLVLSNRLASRSVVFSQLEIGQLVEGTVSGIKPFGVFVDMNGT--SGLL 224
Query: 405 HISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPG 452
HI+ +S+ + S++ + G+ +K ++V +ISLS LE+ PG
Sbjct: 225 HINQISQKYIESLAKVFQVGQPIKAMIVNLDEGQGRISLSTKVLENFPG 273
>gi|218245301|ref|YP_002370672.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
gi|257058336|ref|YP_003136224.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 8802]
gi|218165779|gb|ACK64516.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256588502|gb|ACU99388.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 302
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW +V +I + + ++++ N GG++ +EGLR F+P++ LL +
Sbjct: 96 GQVKLSCRQLQLQQAWEKVAEIAETGKTVQMRVIGTNKGGVIGDVEGLRGFIPRSHLLEK 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N L VG+ + +N D N L+LS+R + + G L+ G V KI P
Sbjct: 156 DN----LDALVGQLLTANFLEVNPDDNKLVLSQRRVIMAAQMDKITAGNLITGKVAKIQP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG I + + +GLLHI+ +S R+ ++ L G+ ++V+++ + +ISLS L
Sbjct: 212 YG--IFVDLNGVTGLLHITQISGLRIDDLNTLFKFGQEIQVMILNIDEYKGRISLSTKVL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENYPG 274
>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
Length = 307
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A +N L G ++ G V+ I P
Sbjct: 154 KAK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIGGV--SGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPGL V + EV
Sbjct: 268 EPEPGLMVRNPEV 280
>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 328
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 155 -----EAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 268 LEPEAGDMLKNRDL 281
>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 328
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 155 -----EAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE E G + +++
Sbjct: 268 LEPEAGDMLKNRDA 281
>gi|452821105|gb|EME28139.1| 30S ribosomal protein S1 (plastid) [Galdieria sulphuraria]
Length = 523
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 11/204 (5%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F ++ + SG P +S RRL ++AW ++ +E + N GG L + G+R
Sbjct: 246 FVLLVADSDSGHPKVSIRRLELEIAWKKLNSALDEASTVEAQVVAVNRGGCLVLVYGIRG 305
Query: 322 FLPKAELLSRVN-NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGT 377
FLP +S ++ T L+E VG + V+ +++ L++S R A A +L+ G
Sbjct: 306 FLP----ISHISLPGTSLEEMVGHKYPVKCLEVDKSKGRLVVSHRRAMAERQMEHLKTGA 361
Query: 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMF 436
L+EGTV+ + PYG + + + SGLLHIS +S +V ++ L GE+VK +VV
Sbjct: 362 LVEGTVQGVKPYGVFVDVFGT--SGLLHISQISHDQVANIQSLFLPGEKVKCMVVSFDKQ 419
Query: 437 PDKISLSIADLESEPGLFVSDKEV 460
+ISLS LE PG + +K++
Sbjct: 420 RGRISLSTKALEPHPGDMLRNKQL 443
>gi|86608329|ref|YP_477091.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 304
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETG-------TVLF-----AE--VLGRTLSG 272
+V+G++ ++D A+ GG P P+ E G + LF AE +L G
Sbjct: 35 VVQGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRPGEDLSALFPLKTEAEFLILREDAEG 94
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+ +LS RRL K W + Q + + + V N GG++ ++GLR F+P++ L R
Sbjct: 95 QIVLSARRLRLKRLWEELAQKQANGQTVTVPVIATNKGGVVVDVQGLRGFIPRSHLSQRE 154
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPY 389
L+E VG+ + +N + N L+LS+R A + NL G ++EG V + P+
Sbjct: 155 G----LEELVGQSLTASFIEVNPEANKLVLSQRAAVKSENLSRYTSGQVVEGKVSGLKPF 210
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G + + + +GLLHI +S++ V S+ DL G+R+K +V+ +++LS+ LE
Sbjct: 211 GVFVDL-EEGVTGLLHIKQVSQSFVASLPDLFKPGQRIKAVVIDVDEAKGRMALSLRVLE 269
Query: 449 SEPG 452
PG
Sbjct: 270 KHPG 273
>gi|352094717|ref|ZP_08955888.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351681057|gb|EHA64189.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 433
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+Q+++ +VK T +N GG+ +EGLR F+P+++L N+
Sbjct: 227 ISCRALALRQSWDKVKQLEKEGRVSQVKVTGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 285
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE+ A E G L+EG V I PYG
Sbjct: 286 ---EALVGKTLGVAFLEVNSETRKLVLSEKRAATAARFSELEVGQLVEGHVAAIKPYGLF 342
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ + S+ ++ ++G+ VK L+ + + P +I+L+ A LE +
Sbjct: 343 VDLG--GISGLLHQSAITGGSMRSMREIFDQGDAVKALITE-LDPGRGRIALNTAMLEGQ 399
Query: 451 PGLFVSDKE 459
PG + DK+
Sbjct: 400 PGELLVDKD 408
>gi|428772044|ref|YP_007163832.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428686323|gb|AFZ46183.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 352
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++Q + + N GG L R+EGLR F+P + + ++
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQQEDATVYSNVFATNRGGALVRVEGLRGFIPGSHISAK 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+ KE +G+ + ++ ++E+ N L+LS R A +N L ++ G+V+ I
Sbjct: 155 -----DAKEDLLGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE EPG ++++E+
Sbjct: 268 LEPEPGDMLTNREL 281
>gi|443321178|ref|ZP_21050240.1| ribosomal protein S1 [Gloeocapsa sp. PCC 73106]
gi|442789096|gb|ELR98767.1| ribosomal protein S1 [Gloeocapsa sp. PCC 73106]
Length = 307
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R+L + AW R+ ++K+ E +E+ + N GG+ IEGLR F+P++ L+ +
Sbjct: 103 GQITVSLRQLAMQHAWERLAEVKENGETVEMFVSGTNKGGVTGEIEGLRCFIPRSHLVQK 162
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---AWATLNLREGTLLEGTVKKIYP 388
NN L VG+ + + ++ + N L+LS+R+ A L++G L+EG V +I
Sbjct: 163 -NNLESL---VGQSLSANLLEVDPERNKLVLSQRQMARTAAMSELQQGDLVEGKVARIES 218
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + + + +GLLHI +S + S+ +L GE VK ++++ +ISLS L
Sbjct: 219 YGVFVDL--NGVTGLLHIKQISNQHIESLFNLFRIGESVKAIIIELDEIKKRISLSTKIL 276
Query: 448 ESEPGLFVSDKE 459
E PG + K+
Sbjct: 277 EDYPGEIIEKKD 288
>gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|355625904|ref|ZP_09048460.1| hypothetical protein HMPREF1020_02539 [Clostridium sp. 7_3_54FAA]
gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|354821131|gb|EHF05527.1| hypothetical protein HMPREF1020_02539 [Clostridium sp. 7_3_54FAA]
Length = 337
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS + KMAW R+R + + + VK TE G + +IEG+R F+P + L +
Sbjct: 124 GNIVLSMKEANDKMAWDRLRTMLEERTVVPVKITEIVNSGAIAQIEGMRGFIPASRLDAA 183
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE-----------GTLL 379
V N L++ +GR + V + +E+ N L+LS REA A L+E G ++
Sbjct: 184 YVEN---LEDFLGRTIDVTVITADEEHNKLVLSGREA-AREKLQEEKKRRIAKCEVGVIM 239
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
+GTV I PYGA I + ++ SGL+HIS +S R+ S +L EG++V V ++ S +K
Sbjct: 240 DGTVDSIKPYGAFISL-ENGLSGLVHISQISSKRIPHPSAVLKEGQKVTVKII-STADNK 297
Query: 440 ISLSIADLES 449
ISLS+ +E+
Sbjct: 298 ISLSMKAVEA 307
>gi|403746310|ref|ZP_10954843.1| RNA binding S1 domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120641|gb|EJY54995.1| RNA binding S1 domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
Length = 393
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 116/195 (59%), Gaps = 22/195 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG+ LS RR + AW+R++++ EPIEV+ + GGL+ + G+RAF+P A L+
Sbjct: 85 SGQVTLSKRRAEQASAWNRMQELLASGEPIEVEIRDVVKGGLVADV-GVRAFIP-ASLVD 142
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-------EAWATL---NLREGTL 378
R V N E K G+ + ++ ++ + N LILS R EA A L+ G +
Sbjct: 143 RRFVENLDEFK---GKTLRAKVVEVDPEKNKLILSRRALLEEETEAKAKALMEELKPGDV 199
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EGTV+++ +GA + IG ++ GL+HIS +S + V S++++EG+RVKV V++ + P+
Sbjct: 200 IEGTVQRLTDFGAFVDIGGAD--GLVHISELSFSHVNHPSEVVHEGDRVKVRVLR-VDPE 256
Query: 439 --KISLSIADLESEP 451
+ISLSI EP
Sbjct: 257 AGRISLSIKAALPEP 271
>gi|348026190|ref|YP_004765995.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
elsdenii DSM 20460]
gi|341822244|emb|CCC73168.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
elsdenii DSM 20460]
Length = 652
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 66/336 (19%)
Query: 136 EEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYE-PKPGDFVIGVVVSGNENKLDVNVGA 194
E ++ EG+EV +S E +D D Y E PK GD V G V+S N++ V++G
Sbjct: 272 ENLQAEGTEV-MSEELLDKYD----------YEENPKKGDVVKGTVISVNDDAAYVSIGT 320
Query: 195 DLLGTMLTKEV-LPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRP 253
+ KE+ +P +K DF+ K +E V I K++ AI
Sbjct: 321 KAEAILPKKEMAVPAPEKASDFV-----KVGDELTVEIANNI-KEEGAI----------- 363
Query: 254 VVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
++S ++ + W VR+ + ++ +E E N GL+
Sbjct: 364 ---------------------VVSLVKMKKVEDWKEVREAFENDQLVECTGKETNKAGLV 402
Query: 314 TRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-- 371
I+ LR F+P ++ + L VG+ V++ I+E N L+LS +
Sbjct: 403 VSIKSLRGFIPLSQ--GDIKFVKSLDYLVGQTFQVKVIDIDEHKNRLVLSRKAVLEAERE 460
Query: 372 --------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
++ EG +LEGTV KI PYGA I +G GLLHIS++S R++SV +L+
Sbjct: 461 AKREEALKHIEEGAVLEGTVVKIMPYGAFIDLG--GVEGLLHISDISWKRISSVDAVLHT 518
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
GE+++VLV K ++ISLS+ L+ P + +K
Sbjct: 519 GEKLQVLVQKFDQERNRISLSLKALQKNPWIAAIEK 554
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V + + +++ N + LS ++ W A G +++G VKK+ P+GA + I
Sbjct: 519 GEKLQVLVQKFDQERNRISLSLKALQKNPWIAAIEKFEVGDIVKGEVKKLLPFGAILAI- 577
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
D GLLHIS ++ R +V DL+N G+ + V ++ KISLS+ ++ +
Sbjct: 578 DPELQGLLHISELTEKRGVAVKDLVNIGDVMNVKIIGIDTDKKKISLSVLAIQKD 632
>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 390
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
L E+ + ++ ++E+ N L+LS R A +N L G ++ G V+ I P
Sbjct: 154 KPKEDLLNEE----LPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIAD 446
YGA I IG SGLLHIS +S + + S +L + +KV+++ + D +ISLS
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIETPSSVLKVNDELKVMII-DLDADRGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE EPG V + ++
Sbjct: 267 LEPEPGAMVKNPQM 280
>gi|428779018|ref|YP_007170804.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428693297|gb|AFZ49447.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 302
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 9/191 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W + + + +P+E+ T N GG+ I GLRAF+P++ +L+
Sbjct: 98 GQVTLSRKQLQEQRVWETLEEYQADKKPVEIVVTGSNRGGVKGEIMGLRAFVPRSHILAS 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIYP 388
N L + +G+ + + +N + L+LS+REA A + G+L+EG + + P
Sbjct: 158 DN----LDDLIGQTVTGILIEVNPEDKRLVLSQREAAKADAMGQIIAGSLIEGKIVNLKP 213
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA + + + +GLLHI +S+ RV S+ L + GE +KV++V +I+LS +L
Sbjct: 214 YGAFVELA-AGVTGLLHIKQISQKRVDSLESLFSVGETLKVMIVDVDEHQGRIALSTKEL 272
Query: 448 ESEPGLFVSDK 458
E PG + K
Sbjct: 273 EHYPGQMLDSK 283
>gi|428200960|ref|YP_007079549.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427978392|gb|AFY75992.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 300
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-----RPVVETGTVL-----------FAEVLGRTLS 271
+VRG + + A GG PG V++G L F V G+
Sbjct: 36 IVRGTVFEHTSEGAYVDIGGKSPGFVPLREASVKSGVSLAESLPLREEKDFLIVSGQNAE 95
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K AW V +I + + ++++ T N GG+ +EGLR F+P++ L+ +
Sbjct: 96 GQVTLSRRQLELKKAWDSVSEIAESGKSVQMRVTGVNKGGVTGEVEGLRGFIPRSHLIEK 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+L+ VG+ + ++ D L+LS+R+A +R+ G L+EG V KI P
Sbjct: 156 ----EDLESLVGQLLTATFLEVDPDNKKLVLSQRQAARAAAIRKLETGALMEGKVVKIQP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YG + + +GLLHI +S + + S++ L G+ +KV++++ + +++SLS L
Sbjct: 212 YGVFVDL--DGVTGLLHIKQVSGSPIDSLTTLFKIGQEIKVVILEIDEYKNRVSLSTKVL 269
Query: 448 ESEPG 452
ES PG
Sbjct: 270 ESYPG 274
>gi|33861087|ref|NP_892648.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639819|emb|CAE18989.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 405
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 26/255 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETG-----------TV-LFAEVL---GRTLSG 272
++GK+ ++ D GG PG P E G T+ L EVL + G
Sbjct: 137 IKGKVIALESDGLYIDIGGKAPGFMPKKECGLGVITNFKEKFTIDLEMEVLVIKEQNADG 196
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S R L + +W +V + E I+V +N GGL ++GLR F+P+++L
Sbjct: 197 MVTVSARALILRQSWEKVASSAKNGELIQVTINGFNRGGLTCDVDGLRGFIPRSQL---- 252
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---LNLREGTLLEGTVKKIYPY 389
N + + V + + V +N +T L+LSE++A +L+ G L+EG V I PY
Sbjct: 253 ENGQDYQSLVSKNLKVAFLEVNPETRKLVLSEKKALLVSKFADLKFGQLIEGEVLAIKPY 312
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G + +G + SGLLH S+++ + ++ ++ EGE +K L+ + + +I L+ A LE
Sbjct: 313 GFFVDLGGA--SGLLHQSSITNGSIRNLREIFREGEVIKALITEIDLERGRIGLNTALLE 370
Query: 449 SEPGLFVSDKEVHII 463
+ PG + DKE +I
Sbjct: 371 NTPGELIIDKEKVMI 385
>gi|359457620|ref|ZP_09246183.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 289
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 113/203 (55%), Gaps = 12/203 (5%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ +G+ LS RRL K W ++ +++ ++ ++V T N GG+ +EGLR
Sbjct: 74 FLIIKGQDANGQVTLSIRRLELKHLWTKLLELQSQSQSVQVTITGVNKGGVTADVEGLRG 133
Query: 322 FLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTL 378
F+P++ LL R N L+ ++G ++ V ++ + L+LS R A + + E G L
Sbjct: 134 FIPRSHLLDRDN----LEGQIGSQLTVTFLEVDPERKKLVLSNRMAEQSSRIGELEIGQL 189
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP- 437
+ GTV + P+GA I++ +GLLHI +S+ V ++S +L GE +K +V+ + P
Sbjct: 190 VSGTVSDLKPFGAFIKL--DGLTGLLHIKEVSQNFVPNLSSVLKIGEPIKAIVL-DLDPG 246
Query: 438 -DKISLSIADLESEPGLFVSDKE 459
++SLS LE+ PG V E
Sbjct: 247 RGRVSLSTKVLENRPGEIVDSLE 269
>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
Length = 400
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + +++AW R RQ++ + + K N GG++ +EGL+ F+P S+V++
Sbjct: 157 ILSLQAIQQELAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVP----FSQVSS 212
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
T +E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 213 KTTAEELLDKELPLKYVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 272
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 273 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
Query: 452 G 452
G
Sbjct: 331 G 331
>gi|443315844|ref|ZP_21045315.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442784569|gb|ELR94438.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 330
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 96 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++E+ N L+LS R A +N L+ G ++ G V+ + P
Sbjct: 156 KPK----EDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLQVGEVVLGNVRGLKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 212 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQL 269
Query: 448 ESEPGLFVSDKEV 460
E EPG V + ++
Sbjct: 270 EPEPGDMVKNPDL 282
>gi|113954120|ref|YP_731196.1| ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113881471|gb|ABI46429.1| Ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 401
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 12/193 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S R L + +W +V+Q+++ +VK T +N GG+ +EGLR F+P+++L
Sbjct: 191 GMVTISCRALALRQSWDKVKQLEKDGRVSQVKVTGFNRGGVTCDLEGLRGFIPRSQLQDG 250
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N+ T VG+ + V +N +T L+LSE+ A E G L+EG V I P
Sbjct: 251 ENHET----LVGKTLGVAFLEVNSETRKLVLSEKRAATAARFSELEIGQLVEGHVAAIKP 306
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIAD 446
YG + +G SGLLH S ++ + S+ ++ ++G+ VK L+ + + P +I+L+ A
Sbjct: 307 YGLFVDLG--GISGLLHQSAITGGSMRSMREIFDQGDAVKALITE-LDPGRGRIALNTAM 363
Query: 447 LESEPGLFVSDKE 459
LE +PG + +K+
Sbjct: 364 LEGQPGELLVEKD 376
>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 186
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 12 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 67
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 68 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 127
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 128 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 185
Query: 452 G 452
G
Sbjct: 186 G 186
>gi|409991308|ref|ZP_11274581.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
str. Paraca]
gi|291567299|dbj|BAI89571.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
gi|409937828|gb|EKN79219.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
str. Paraca]
Length = 294
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + AW + + + +E ++V+ T N GG+ ++ LR F+P++ LL R
Sbjct: 90 GQVLLSLRQLQVEKAWDNLSETSENSESLQVRVTGVNRGGVTVDVDCLRGFIPRSHLLDR 149
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
N L+ VG + V I N D L+LS+R A +++ L+ G L+EGTV I P
Sbjct: 150 EN----LEALVGETITVTIIEFNRDRQKLVLSQRMASQSVSFSQLQVGQLVEGTVGSIKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G I + +GL+HI +S+ V S+ D+ G+ VK LV+ ++SLS L
Sbjct: 206 FGVFIEL--EGVTGLIHIKEVSQKYVGSLPDIFTLGQTVKALVISLEEGRQRVSLSTRLL 263
Query: 448 ESEPGLFV 455
E+ PG V
Sbjct: 264 ENYPGEIV 271
>gi|428217034|ref|YP_007101499.1| 30S ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
gi|427988816|gb|AFY69071.1| SSU ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
Length = 391
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQEEDATVRSLIFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A +N L G ++ G V+ I P
Sbjct: 154 KPK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + ++ N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHNVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E+EPG V D ++
Sbjct: 268 EAEPGDMVRDPQL 280
>gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
Length = 337
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS- 330
G +LS + KMAW R+R + + + VK TE G + +IEG+R F+P + L +
Sbjct: 124 GNIVLSMKEANDKMAWDRLRTMLEERTVVPVKITEIVNSGAIAQIEGMRGFIPASRLDAV 183
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE-----------GTLL 379
V N L++ +GR + V + +E+ N L+LS REA A L+E G ++
Sbjct: 184 YVEN---LEDFLGRTIDVTVITADEEHNKLVLSGREA-AREKLQEEKKRRIAKCEVGVIM 239
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
+GTV I PYGA I + ++ SGL+HIS +S R+ S +L EG++V V ++ S +K
Sbjct: 240 DGTVDSIKPYGAFISL-ENGLSGLVHISQISSKRIPHPSAVLKEGQKVTVKII-STADNK 297
Query: 440 ISLSIADLES 449
ISLS+ +E+
Sbjct: 298 ISLSMKAVEA 307
>gi|356558105|ref|XP_003547348.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 399
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 106/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + +AW R RQ+K + ++ K N GGL+ ++EGL+ F+P +++ S+ +
Sbjct: 150 ILSLRSIQYDIAWERCRQLKAEDAVVKGKVINANKGGLVAQVEGLKGFVPFSQISSK-SA 208
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL--NLREGTLLEGTVKKIYPYGAQ 392
EL E+V + + ++E+ + L+LS R+A A L G+++ G+V+ I PYGA
Sbjct: 209 GEELLEQV---IPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAF 265
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG SGLLH+S +S R+T + +L G+ +KV+++ ++SLS LE P
Sbjct: 266 IDIG--GISGLLHVSQISHDRITDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTP 323
Query: 452 G 452
G
Sbjct: 324 G 324
>gi|384246482|gb|EIE19972.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 386
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 116/200 (58%), Gaps = 15/200 (7%)
Query: 274 PLLSTRRLFRKMAWHRVRQIKQL----NEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
PLL+ + L +AW R RQ+K E V T+ N+GGLL +E L AFLP + +
Sbjct: 137 PLLTAKELDIAVAWERARQMKHACEEDKEIFTVVVTDVNSGGLLATMESLPAFLPYSLMA 196
Query: 330 -SRVNNFTEL----KEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEG 381
+R +++ + K+ + + + V I ++ ++L+ ++A L++ G+L+ G
Sbjct: 197 KNREDSWMSIEDVKKKYLNKTIEVGIKDVSPQLRKVVLNMQQAITNRLLKKLTVGSLVWG 256
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV--KSMFPDK 439
TV+++ PYG + + D+ SGLLHIS++SR + SV D+ + G+RV+ +++ F +
Sbjct: 257 TVRRVEPYGVFVGLEDTRFSGLLHISSISRAHIESVEDMFSVGDRVRAMLIGMDEGF-SR 315
Query: 440 ISLSIADLESEPGLFVSDKE 459
ISLS ++LE+ PG + KE
Sbjct: 316 ISLSTSELEAAPGDMLFSKE 335
>gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9313]
Length = 421
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+Q+++ + +VK +N GG+ +EGLR F+P+++L + N+
Sbjct: 215 ISCRALELRKSWSKVQQMEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENH- 273
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ +G+ + V +N +T L+LSE+ A E G L+EG V + PYG
Sbjct: 274 ---EALIGKTLGVAFLEVNPETRKLVLSEKRAATAARFSELEVGQLVEGQVVAVKPYGFF 330
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ N+G+RVK L+ + M P +I+L+ A LE +
Sbjct: 331 IDLGGV--SGLLHQSMITGGSLRSLREVFNQGDRVKALITE-MDPGRGRIALNTALLEGQ 387
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 388 PGELLIEKD 396
>gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9303]
Length = 481
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+Q+++ + +VK +N GG+ +EGLR F+P+++L + N+
Sbjct: 275 ISCRALELRKSWSKVQQMEKEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENH- 333
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE+ A E G L+EG V + PYG
Sbjct: 334 ---EALVGKTLGVAFLEVNPETRKLVLSEKRAATAARFSELEVGQLVEGQVVAVKPYGFF 390
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ N+G+RVK L+ + M P +I+L+ A LE +
Sbjct: 391 IDLGGV--SGLLHQSMITGGSLRSLREVFNQGDRVKALITE-MDPGRGRIALNTALLEGQ 447
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 448 PGELLIEKD 456
>gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 424
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +VR +++ + ++VK +N GG+ +EGLR F+P+++L N+
Sbjct: 218 VSARALALRQSWEKVRALEKEGKVLQVKVNGFNRGGVTADVEGLRGFIPRSQLQEGENH- 276
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE++A NL G L+EG V + PYG
Sbjct: 277 ---EALVGKTLGVAFLEVNPETRKLVLSEKKAATAAIFQNLEVGQLVEGQVVSVKPYGLF 333
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ ++ + ++ +G+RVK L+ + + P +I+L+ A LE +
Sbjct: 334 VDLG--GISGLLHQSVITGGQMRDLREVFGQGDRVKALITE-LDPGRGRIALNTALLEGQ 390
Query: 451 PGLFVSDKE 459
PG + D++
Sbjct: 391 PGELLIDRD 399
>gi|412986743|emb|CCO15169.1| 30S ribosomal protein S1 [Bathycoccus prasinos]
Length = 363
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 7/195 (3%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F V G G LS R++ + AW R RQ + + + + N GG+L +E LR
Sbjct: 126 FEIVKGDDGEGSMTLSVRKIQLEAAWERCRQAQADDLALSSEVLSVNRGGILVEVENLRG 185
Query: 322 FLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTL 378
F+P++ L R+ + E VG+ + V+ ++E+ N L+ S R A ++ L G +
Sbjct: 186 FIPQSHLGPRL-ALGDRDELVGQTLPVKFIEVDEEKNRLVASHRLATDLVSGEGLDVGDV 244
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFP 437
+ G V+ + PYGA + +G +SGLLHIS +S R+ +V ++L+ G+ +KVL++ K
Sbjct: 245 VTGIVQAVKPYGAFVDVG--GQSGLLHISQISHERIVAVENVLSPGDELKVLILSKDKER 302
Query: 438 DKISLSIADLESEPG 452
++SLS LE G
Sbjct: 303 GRLSLSTKKLEPNHG 317
>gi|356532488|ref|XP_003534804.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 402
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + +AW R RQ+K + ++ K N GGL+ ++EGL+ F+P +++ S+ +
Sbjct: 153 ILSLRSIQYDIAWERCRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISSK-SA 211
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL--NLREGTLLEGTVKKIYPYGAQ 392
EL E V + + ++E+ + L+LS R+A A L G+++ G+V+ I PYGA
Sbjct: 212 GEELLEHV---IPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAF 268
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG SGLLH+S +S R+T + +L G+ +KV+++ ++SLS LE P
Sbjct: 269 IDIG--GISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 326
Query: 452 G 452
G
Sbjct: 327 G 327
>gi|428222610|ref|YP_007106780.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427995950|gb|AFY74645.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 335
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQKEDATVRALIFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++KE+ V + ++ ++ED N L+LS R A +N L G ++ G V+ I
Sbjct: 154 -----KVKEELVNEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++ N + VKV+++ +ISLS
Sbjct: 209 PYGAFIDIG--GVSGLLHISEISHDHIDTPHNVFNVNDEVKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE+EPG V + +V
Sbjct: 267 LEAEPGDMVKNPQV 280
>gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3M9]
Length = 423
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W RV+++++ + ++V +N GG+ +EGLR F+P+++L N+
Sbjct: 217 ISCRALALRKSWERVKEMEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 275
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LSE+ A E G L+EG V + PYG
Sbjct: 276 ---QELVGKTLGVAFLEVNSETRKLVLSEKRAAVAARFSELEVGQLVEGQVAAVKPYGLF 332
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ ++G+RVK ++ + + P +I L+ A LE
Sbjct: 333 IDLG--GISGLLHQSMITNGSLRSIREVFDQGDRVKAMITE-LDPGRGRIGLNTALLEGP 389
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 390 PGELLVEKD 398
>gi|443478405|ref|ZP_21068163.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
gi|443016312|gb|ELS31002.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
Length = 342
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 96 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLIFATNRGGALVRIEGLRGFIPGSHISTR 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E VG + ++ ++ED N L+LS R A +N L G ++ G V+ I P
Sbjct: 156 KPK----EELVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + ++ N + VKV+++ +ISLS L
Sbjct: 212 YGAFIDIGGV--SGLLHISEISHEHIETPHNVFNVNDEVKVMIIDLDAERGRISLSTKQL 269
Query: 448 ESEPGLFVSDKEV 460
E+EPG V D ++
Sbjct: 270 EAEPGDMVRDPQL 282
>gi|90655490|gb|ABD96330.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O6]
Length = 408
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+++++ + ++V +N GG+ +EGLR F+P+++L N+
Sbjct: 202 ISCRALELRKSWDKVKELEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQEGDNH- 260
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LS++ A +E G L+EG V + PYG
Sbjct: 261 ---QELVGKTLGVAFIEVNSETRKLVLSQKRAAVAARFQELEVGQLVEGVVAAVKPYGLF 317
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S+++ + S+ ++ ++GERV+ L+ + + P +I L+ A LE
Sbjct: 318 IDLG--GISGLLHQSSITNGSLRSIREVFDQGERVQALITE-LDPGRGRIGLNTALLEGP 374
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 375 PGELLIEKD 383
>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
Length = 425
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R +LS +++ +AW R RQ++ + ++ K N GGL +E LR F+P +++ +++
Sbjct: 176 RMILSLQKIQCDLAWERCRQLQTEDVVVKGKVLSANKGGLNVLVECLRGFVPFSQISTKI 235
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYG 390
N ++E V + + ++ ++E+ L+LS R+A A L G+++ GTV+ I PYG
Sbjct: 236 N----IEELVNKEIPLKFMEVDEEQTRLVLSNRKAMADSQAQLGIGSVVLGTVQTIKPYG 291
Query: 391 AQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLES 449
A + +G N GLLH+S +S RV V +L G+ +KV+++ ++SLS LE
Sbjct: 292 AFVDLGGIN--GLLHVSQISHDRVADVGTILQPGDTLKVMILSHDRERGRVSLSTKKLEP 349
Query: 450 EPG 452
PG
Sbjct: 350 TPG 352
>gi|434387366|ref|YP_007097977.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428018356|gb|AFY94450.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 297
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW++V I+ E I+++ T N GG+ +G+R F+P+++L+ R
Sbjct: 93 GQVTLSKRQLQVRYAWNQVGDIQSNKESIQLRVTGVNKGGVTVNFQGIRGFIPRSQLVER 152
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+L+ VG + I ++D N L+ S+R+A T N + G L+ GT+ I P
Sbjct: 153 -----DLESLVGTSIPGVIIEADKDKNKLVFSQRQATRTANFSQLELGQLVTGTIVGIKP 207
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+GA + + +GL++I +S+ R+ + L G+ +K +++ KISLS L
Sbjct: 208 FGAFVEF--NGNTGLIYIKQISQNRIEACEKLFTIGQEIKAMIIDLDEGNGKISLSTRVL 265
Query: 448 ESEPG 452
E+ PG
Sbjct: 266 ENHPG 270
>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
gi|113548409|dbj|BAF11852.1| Os03g0315800, partial [Oryza sativa Japonica Group]
Length = 390
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P S+V++
Sbjct: 144 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVP----FSQVSS 199
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 200 KSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 259
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 260 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 317
Query: 452 G 452
G
Sbjct: 318 G 318
>gi|449459770|ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
gi|449517357|ref|XP_004165712.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
Length = 413
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 106/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + +AW R RQ++ + ++ K + N GG++ +EGLR F+P S+++
Sbjct: 165 ILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVP----FSQIST 220
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ + L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 221 KSNAEELLSKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 280
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG N GLLH+S +S R++ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 281 IDIGGIN--GLLHVSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTP 338
Query: 452 G 452
G
Sbjct: 339 G 339
>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
Length = 402
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P S+V++
Sbjct: 156 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVP----FSQVSS 211
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 212 KSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 271
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 272 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 329
Query: 452 G 452
G
Sbjct: 330 G 330
>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
Length = 382
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + + +AW R RQ++ + + K N GG++ +EGL+ F+P S+V++
Sbjct: 136 ILSLQAIQQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVP----FSQVSS 191
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 192 KSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 251
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 252 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 309
Query: 452 G 452
G
Sbjct: 310 G 310
>gi|434391256|ref|YP_007126203.1| RNA binding S1 domain protein [Gloeocapsa sp. PCC 7428]
gi|428263097|gb|AFZ29043.1| RNA binding S1 domain protein [Gloeocapsa sp. PCC 7428]
Length = 299
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 26/245 (10%)
Query: 228 MVRGKMGIVKDDDA-IAMSGGSGPGRPVVETG--------TVL-------FAEVLGRTLS 271
+VRGK+ + D A + + G S P+ E G TVL F + + +
Sbjct: 35 VVRGKVFQYESDGAYVDIGGKSAAFIPLTEVGLHSVSDLSTVLPLQEEQEFLIIREQNVD 94
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W ++ ++++ + +EV+ N GG+ ++GLR F+P++ LL R
Sbjct: 95 GQVTLSRRQLQIKQLWEQLSEMQEDGKSLEVRVKGVNKGGVTVDVQGLRGFIPRSHLLER 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLNLREGTLLEGTVKKIYP 388
N L+ VG+ + + +N D N L+LS+R A A G ++ G + I P
Sbjct: 155 EN----LENLVGQNLNASLLEVNRDNNKLVLSQRLATRSQAMTQFEPGQVVTGKISAIKP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + N GLLHI +S+ V S+ L G+ + +VV +ISLS L
Sbjct: 211 FGVFVELDGIN--GLLHIKQISQNYVESLPSLFQTGQEISAVVVDVDESQSRISLSTRVL 268
Query: 448 ESEPG 452
E+ PG
Sbjct: 269 ENYPG 273
>gi|78212274|ref|YP_381053.1| SSU ribosomal protein S1P [Synechococcus sp. CC9605]
gi|78196733|gb|ABB34498.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 424
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W RV+++++ + ++V +N GG+ ++GLR F+P+++L + N+
Sbjct: 218 ISCRALELRKSWDRVKELEKQGKVVQVIVNNFNRGGVTCDLQGLRGFIPRSQLQNGENH- 276
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---LNLREGTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LSE+ A +L G L+EG V + PYG
Sbjct: 277 ---QELVGKTLGVAFIEVNSETRKLVLSEKRAAVAERFQDLEVGQLVEGQVAAVKPYGLF 333
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ R+ S+ ++ ++G+RV L+ + + P +I L+ A LE
Sbjct: 334 IDLG--GISGLLHQSAITNGRLRSIREVFDQGDRVSALITE-LDPGRGRIGLNTALLEGP 390
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 391 PGELLIEKD 399
>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|59802964|sp|P46228.4|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
Length = 307
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A +N L G ++ G V+ I P
Sbjct: 154 KAK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIGGV--SGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKEV 460
E EPG V + EV
Sbjct: 268 EPEPGDMVRNPEV 280
>gi|416402894|ref|ZP_11687458.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
gi|357261819|gb|EHJ11043.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
Length = 358
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 107 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 166
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG ++ ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 167 -----EAKEDLVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 221
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 222 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQ 279
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 280 LEPEAGDMLKNRDL 293
>gi|86607005|ref|YP_475768.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86555547|gb|ABD00505.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 323
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + SR
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQKEDATVRATIFATNRGGALVRIEGLRGFIPGSHISSR 152
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E VG + ++ ++ED N L+LS R A +N L G ++ GTV+ I P
Sbjct: 153 KPK----EELVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKP 208
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S V + + N + VKV+++ +ISLS L
Sbjct: 209 YGAFIDIG--GVSGLLHISEISHEHVDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 266
Query: 448 ESEPGLFVSD 457
E PG + D
Sbjct: 267 EPNPGDMLRD 276
>gi|209522969|ref|ZP_03271526.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|423062381|ref|ZP_17051171.1| 30S ribosomal protein S1 [Arthrospira platensis C1]
gi|209496556|gb|EDZ96854.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|406716289|gb|EKD11440.1| 30S ribosomal protein S1 [Arthrospira platensis C1]
Length = 294
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + AW + +I + +E ++V T N GG+ + LR F+P++ LL R
Sbjct: 90 GQVLLSLRKLQVEKAWDHLSEISENSESLQVVVTGVNRGGVTVDADCLRGFIPRSHLLVR 149
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
N L+ VG + V + N D L+LS+R A +++ L+ G L+EGTV I P
Sbjct: 150 DN----LEALVGETITVTVLEFNRDREKLVLSQRMASQSVSFSQLQVGQLVEGTVGSIKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G I + +GL+HI +S+ V S+ D+ G+ VK LV+ ++SLS L
Sbjct: 206 FGVFIEL--EGVTGLIHIKEVSQKYVGSLPDIFTIGQTVKALVISLEEGRQRVSLSTRLL 263
Query: 448 ESEPGLFV 455
E+ PG V
Sbjct: 264 ENYPGEIV 271
>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 345
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSDVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG ++ ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 267 LEPEAGDMLKNRDL 280
>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 365
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 123 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 182
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 183 -----EAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 237
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 238 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQ 295
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 296 LEPEAGDMLKNRDL 309
>gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
Length = 430
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 108/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+Q+++ + +VK + +N GG+ +EGLR F+P+++L N+
Sbjct: 224 ISCRALALRQSWDKVKQLEKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 282
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N DT L+LSE++A E G L+EG V + PYG
Sbjct: 283 ---EALVGKTLGVAFLEVNPDTRKLVLSEKKAATAARFAELEVGQLVEGHVAAVKPYGLF 339
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ + G+ VK L+ + + P +I+L+ A LE +
Sbjct: 340 IDLG--GISGLLHQSMITGGSLRSIREVFDHGDSVKALITE-LDPGRGRIALNTAMLEGQ 396
Query: 451 PGLFVSDKE 459
PG + +++
Sbjct: 397 PGELLINRD 405
>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9515]
Length = 363
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++KE + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----KIKEDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVTDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
Length = 359
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 117 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 176
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 177 -----EAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 231
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 232 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQ 289
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 290 LEPEAGDMLKNRDL 303
>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
Length = 385
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 117/192 (60%), Gaps = 24/192 (12%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++R+ ++ E I + E GGL+ + G+R F+P A L+ R V
Sbjct: 82 ILSKRAVQAEKAWDQLRKQQEKGEIITAEVAEVVKGGLVVDV-GVRGFIP-ASLVERHFV 139
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATL---------NLREGTLLEGT 382
+F++ K GR + +++ ++++ N LILS+R A L +L+ G +EGT
Sbjct: 140 EDFSDYK---GRELRLKVEELDQENNKLILSQRAVLDAELEEKKKNVLQSLKSGDTVEGT 196
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
V+++ +GA + +G + GL+HIS ++ RV + SD++NEG++VKV V+ S+ PD ++
Sbjct: 197 VQRLTNFGAFVDVGGVD--GLVHISQLAHHRVETPSDIVNEGDKVKVKVL-SVDPDSERV 253
Query: 441 SLSIADLESEPG 452
SLSI D ++PG
Sbjct: 254 SLSIKD--TQPG 263
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ ++ D+ + LS ++ W + + G ++EGTV+++ +GA + +
Sbjct: 236 GDKVKVKVLSVDPDSERVSLSIKDTQPGPWEEVAGQISTGDVIEGTVRRLVSFGAFVEVA 295
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADL 447
GL+HIS ++ + + S++L EGE+V+V V+ DK ISLSI +L
Sbjct: 296 -PGVEGLVHISQIANRHIGTPSEVLTEGEKVEVKVLDVNLDDKRISLSIREL 346
>gi|32307552|gb|AAP79181.1| ribosomal protein rpS1 [Bigelowiella natans]
Length = 419
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 269 TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
T++ +LS +R+ AW RVRQ+ +L+ + K N GG + ++ L+ FLP +++
Sbjct: 190 TMASDVVLSIKRMLIPTAWTRVRQMAELDVTLSGKILSHNRGGFIIEVDSLQGFLPFSQM 249
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKK 385
+ V+ E +G+ + V+ ++ + L++S R A A+ N + G ++ GTV
Sbjct: 250 ATSVDK----DEMIGKVIPVKFLEVDMENQRLVMSNRRAVASSFKKNYKVGDVVVGTVTA 305
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
+ PYGA I +G N GLLHIS +S VTSV D+++ G+++KV+++ ++SLS
Sbjct: 306 LKPYGAFINLGGVN--GLLHISQISHDHVTSVKDVMDVGQKLKVMIMSRDQNGRVSLSTK 363
Query: 446 DLESEPG 452
LE G
Sbjct: 364 RLEPNAG 370
>gi|354555643|ref|ZP_08974943.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|353552293|gb|EHC21689.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 336
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----EAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE E G + ++++
Sbjct: 267 LEPEAGDMLKNRDL 280
>gi|33866272|ref|NP_897831.1| 30S ribosomal protein S1 homolog B, Nbp1 [Synechococcus sp. WH
8102]
gi|33639247|emb|CAE08255.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus
sp. WH 8102]
Length = 406
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+++++ + ++V +N GG+ +EGLR F+P+++L N+
Sbjct: 200 ISCRALELRKSWDKVKELEKHGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQEGDNH- 258
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LS++ A +E G L+EG V + PYG
Sbjct: 259 ---QELVGKTLGVAFIEVNSETRKLVLSQKRAAVAARFQELEVGQLVEGVVAAVKPYGLF 315
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S+++ + S+ ++ ++G+RV+ L+ + + P +I L+ A LE
Sbjct: 316 IDLG--GISGLLHQSSITNGSLRSIREVFDQGDRVQALITE-LDPGRGRIGLNTALLEGP 372
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 373 PGELLIEKD 381
>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
Length = 363
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++K+ + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----KIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 363
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++K+ + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----KIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|376001762|ref|ZP_09779618.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375329874|emb|CCE15371.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 294
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + AW + +I + +E ++V T N GG+ + LR F+P++ LL R
Sbjct: 90 GQVLLSLRKLQVEKAWDNLSEIAENSESLQVVVTGVNRGGVTVDADCLRGFIPRSHLLVR 149
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
N L+ VG + V + N D L+LS+R A +++ L+ G L+EGTV I P
Sbjct: 150 DN----LEALVGETITVTVLEFNRDREKLVLSQRMASQSVSFSQLQVGQLVEGTVGSIKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G I + +GL+HI +S+ V S+ D+ G+ VK LV+ ++SLS L
Sbjct: 206 FGVFIEL--EGVTGLIHIKEVSQKYVGSLPDIFTIGQTVKALVISLEEGRQRVSLSTRLL 263
Query: 448 ESEPGLFV 455
E+ PG V
Sbjct: 264 ENYPGEIV 271
>gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 459
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 28/254 (11%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D LL D+ +E + + + D++ A+S G VL V G+
Sbjct: 61 DELLVDIGSKSEGIIPAREFSTLTDEERAALSVGD----------HVLVFVVQAENQEGQ 110
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL---- 329
+LS R ++ +W R+++I + E IE + T +N GGLL ++G+R F+P +++
Sbjct: 111 AVLSIDRARQEKSWRRLQEIYEAGEIIEAEVTNYNKGGLLVNLDGVRGFVPASQVTEIRG 170
Query: 330 -SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ ++ +G ++ ++I IN N LILSER+A L EG
Sbjct: 171 GDDSSKQADMARLIGSKLSLKIIEINRHRNRLILSERQAIQERRDVMKERLIEELTEGET 230
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
G V I +GA + IG ++ GL+H+S +S +RV S++L GE V V V+ +
Sbjct: 231 RRGRVTSITDFGAFVDIGGAD--GLVHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEE 288
Query: 438 DKISLSIADLESEP 451
KI+LSI + EP
Sbjct: 289 KKIALSIKRTQPEP 302
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G + +EL SRV + +E+ KVG + V + IN + + LS +
Sbjct: 242 GAFVDIGGADGLVHLSELSWSRVKHPSEVL-KVGEEVDVYVLGINAEEKKIALSIKRTQP 300
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E W+ + ++ G L+ GTV ++ +GA RI D GL+H+S +S R+ +++E
Sbjct: 301 EPWSRVAMKYEVGQLVLGTVTQLANFGAFARIEDGI-EGLIHVSELSEQRIGHPRQVVSE 359
Query: 424 GERVKVLVVK 433
G+ + + +++
Sbjct: 360 GQDLILRIIR 369
>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 389
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 106/186 (56%), Gaps = 8/186 (4%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+GR +LS R++ ++ W R Q+ + + N+GG + +EGLR F+P +++ +
Sbjct: 164 NGRMILSLRKIQHELCWERCAQLLADDVVVRGTILSSNSGGFVVAVEGLRGFVPFSQISA 223
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
+ E E + + + ++ ++E+ L+LS R+A + G+++ GTV+ +
Sbjct: 224 VTQSNPE--ELLNKEIPLKFLEVDEERTRLVLSNRKATFAESQSAFGIGSVVVGTVQTVK 281
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S R+TSV +L+ G+++KV+V+ + +ISLS
Sbjct: 282 PYGAFIDIG--GVSGLLHISQISHDRLTSVETVLSPGDKLKVMVLSQDKDRGRISLSTKK 339
Query: 447 LESEPG 452
LE PG
Sbjct: 340 LEPTPG 345
>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9301]
Length = 363
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++K+ + G + ++ ++E+ N L+LS R A +N L G ++ G VK I
Sbjct: 203 -----KIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGNVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 363
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++K+ + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----KIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|384246163|gb|EIE19654.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 400
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 8/194 (4%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEG--LRAFLPKAEL 328
+G LS + L + + W R+RQ+ + +E GL+ RI + F+P + +
Sbjct: 168 TGELRLSIKTLEKALLWQRLRQMSEEGATVEAVVDSVRPAGLIVRINASDVTGFVPGSHI 227
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-AWAT---LNLREGTLLEGTVK 384
+ + +G + ++I ++E+ + L+LS R+ A+ T +NL+ G +++GTV
Sbjct: 228 SPGPGPAVDWQTLLGETLNLKILELDEEKDRLVLSNRKNAFNTRRQINLQVGEVVDGTVA 287
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
+ PYGA + +GD N +GLLHIS +S R++SV ++L G++VKV+++ ++SLS
Sbjct: 288 TLQPYGAFVNLGD-NMNGLLHISQISHDRISSVENVLQVGQKVKVMILTLDKEKGRVSLS 346
Query: 444 IADLESEPGLFVSD 457
LE PG V D
Sbjct: 347 TKKLEPTPGDMVRD 360
>gi|225377348|ref|ZP_03754569.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
16841]
gi|225210879|gb|EEG93233.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
16841]
Length = 300
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 108/190 (56%), Gaps = 16/190 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G LLS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P ++L L
Sbjct: 83 GNILLSRKEANDVLAWEKLQQMMEDGTVVKVRIKESVPSGVVTFLEGIRAFIPASQLALD 142
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE----------GTLLE 380
V N +E +G+ + ++ ++ + L+LS ++ + E GT++E
Sbjct: 143 YVEN---TEEWIGKEVEAKVITVDPEKEKLVLSAKQVAKEAAIEERNHKISMIVPGTVME 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+ + PYGA I +G+ SGL+HIS + R+ S++L EG++VK V+ + +KI
Sbjct: 200 GTVESLMPYGAFINLGN-GLSGLVHISQICERRIKKPSEVLKEGQKVKAKVLNTN-DNKI 257
Query: 441 SLSIADLESE 450
SLS+ LE E
Sbjct: 258 SLSMKALEEE 267
>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC729]
Length = 363
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
++K+ + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----KIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|82799326|gb|ABB92252.1| 30S ribosomal protein S1-like protein B [uncultured marine type-A
Synechococcus 5B2]
Length = 411
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+++++ + ++V +N GG+ +EGLR F+P+++L N+
Sbjct: 205 ISCRALELRKSWDKVKELEKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 263
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LSE+ A +E G L+EG V + PYG
Sbjct: 264 ---QELVGKTLGVAFIEVNSETRKLVLSEKRAAIAARFQELEIGQLVEGLVAAVKPYGLF 320
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ ++G+RV L+ + + P +I L+ A LE
Sbjct: 321 IDLG--GISGLLHQSAITNGSLRSIREVFDQGDRVHALITE-LDPARGRIGLNTALLEGP 377
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 378 PGELLVEKD 386
>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 106/186 (56%), Gaps = 7/186 (3%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+GR +LS R++ + W R Q+ + + N+GG + +EGLR F+P +++ +
Sbjct: 159 NGRMILSLRKIQYDLCWERCAQMLADDVVVRGTILSHNSGGFVVDVEGLRGFVPFSQVSA 218
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIY 387
R + +E + + + ++ ++E+ L+LS R+A N G+++ GTV+ +
Sbjct: 219 RGAQ-SNPEELLNKEIPLKFLEVDEERTRLVLSNRKATFAENQSAFGIGSVVVGTVQTVK 277
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S R+T+V +L+ G+++KV+++ + +ISLS
Sbjct: 278 PYGAFIDIG--GVSGLLHISQISHDRLTTVETVLSPGDKLKVMILSQDKDRGRISLSTKK 335
Query: 447 LESEPG 452
LE PG
Sbjct: 336 LEPTPG 341
>gi|86609793|ref|YP_478555.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558335|gb|ABD03292.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 322
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ+++ + + N GG L RIEGLR F+P + + +R
Sbjct: 92 GQLTLSIRRIEYMRAWERVRQLQKEDATVRSTIFATNRGGALVRIEGLRGFIPGSHISTR 151
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E VG + ++ ++ED N L+LS R A +N L G ++ GTV+ I P
Sbjct: 152 KPK----EELVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKP 207
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S V + + N + VKV+++ +ISLS L
Sbjct: 208 YGAFIDIG--GVSGLLHISEISHDHVDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 265
Query: 448 ESEPGLFVSD 457
E PG + D
Sbjct: 266 EPNPGDMIRD 275
>gi|428780280|ref|YP_007172066.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428694559|gb|AFZ50709.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 398
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA---TLNLREGTLLEGTVKKIYP 388
++ V + + ++ ++E+ N L+LS R A L+ G ++ G+V+ I P
Sbjct: 155 QPK----EDLVAQDLPLKFLEVDEERNRLVLSHRRALVERKMSGLKVGEVVIGSVRGIKP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + S + + + +KV+++ +ISLS L
Sbjct: 211 YGAFIDIG--GVSGLLHISEISHDHIDTPSSVFDINDELKVMIIDLDAERGRISLSTKQL 268
Query: 448 ESEPGLFVSDKE 459
E G ++D+E
Sbjct: 269 EPIAGAMLNDRE 280
>gi|90655539|gb|ABD96378.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O12]
Length = 408
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V++ ++ + ++V +N GG+ +EGLR F+P+++L N+
Sbjct: 202 ISCRALELRKSWDKVKEFEKEGKVVQVVVNGFNRGGVTCDLEGLRGFIPRSQLEDGENH- 260
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LS++ A +E G L+EG V + PYG
Sbjct: 261 ---QELVGKTLGVAFIEVNSETRKLVLSQKRAAVAARFQELEVGQLVEGVVAAVKPYGLF 317
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ ++GERV+ L+ + + P +I L+ A LE
Sbjct: 318 IDLG--GISGLLHQSAITNGSLRSIREVFDQGERVQALITE-LDPGRGRIGLNTALLEGP 374
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 375 PGELLVEKD 383
>gi|78185204|ref|YP_377639.1| RNA binding S1 [Synechococcus sp. CC9902]
gi|78169498|gb|ABB26595.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 412
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 106/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+ +++ + ++V + +N GG+ +EGLR F+P+++L N+
Sbjct: 206 ISCRALELRKSWDKVKVLEKEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 264
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N T L+LSE+ A +E G L+EG V + PYG
Sbjct: 265 ---QELVGKTLGVAFLEVNSGTRKLVLSEKRAATAARFQELEVGQLVEGLVASVKPYGLF 321
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S+++ + S+ ++ ++G+RV L+ + P +I L+ A LE
Sbjct: 322 IDLG--GISGLLHQSSITNGSLRSIREVFDQGDRVSALIT-DLDPGRGRIGLNTALLEGP 378
Query: 451 PGLFVSDKE 459
PG + DK+
Sbjct: 379 PGELLIDKD 387
>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
AS9601]
Length = 363
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 143 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 202
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+K+ + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 203 -----RIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 257
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 258 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKA 315
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 316 LEPEPGDMLTD 326
>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 366
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 146 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISAR 205
Query: 332 VNNFTELKEKV-GRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+K+ + G + ++ ++E+ N L+LS R A +N L G ++ G+VK I
Sbjct: 206 -----RVKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIK 260
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + ++LN +++KV+++ +ISLS
Sbjct: 261 PYGAFIDIG--GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKA 318
Query: 447 LESEPGLFVSD 457
LE EPG ++D
Sbjct: 319 LEPEPGDMLTD 329
>gi|260436360|ref|ZP_05790330.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
gi|260414234|gb|EEX07530.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
Length = 390
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W RV+++ + + ++V +N GG+ +EGLR F+P+++L + N+
Sbjct: 184 ISCRALELRKSWDRVKELDKQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQNGENH- 242
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---LNLREGTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N +T L+LSE+ A +L G L+EG V + PYG
Sbjct: 243 ---QEFVGKTLGVAFIEVNSETRKLVLSEKRAAVAERFQDLEVGQLVEGQVAAVKPYGLF 299
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ ++G+RV L+ + + P +I L+ A LE
Sbjct: 300 IDLG--GISGLLHQSAITNGSLRSIREVFDQGDRVSALITE-LDPGRGRIGLNTALLEGP 356
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 357 PGELLIEKD 365
>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
Length = 567
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 268 RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
RT G ++ ++L R+ AW+++ Q ++ P+E E GG IEGL+AFLP ++
Sbjct: 85 RTPDGMVRVAYKKLQRRRAWNKIEQAQKNKTPLEAYVLERIKGGFAVDIEGLKAFLPFSQ 144
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGT 377
+ E E +G + V++ ++ N++++S R NL EG
Sbjct: 145 AFLKPPKNPE--EIIGTTLKVEVVSVDRKKNNVVVSHRNYLEKESERRKKELLENLEEGQ 202
Query: 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMF 436
+LEGTVK I YG + +G + GLLH+S++S RV S+ G+++KV V+K
Sbjct: 203 VLEGTVKSITDYGVFVDLGGVD--GLLHVSDISWGRVKHPSNYFKVGDKIKVKVIKYDRE 260
Query: 437 PDKISLSIADLESEPGLFVSDK 458
+KI+L I L +P V++K
Sbjct: 261 KEKIALGIKQLTPDPWETVAEK 282
>gi|254430923|ref|ZP_05044626.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
gi|197625376|gb|EDY37935.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
Length = 422
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +VR +++ + ++VK +N GG+ +EGLR F+P+++L N+
Sbjct: 216 VSARALALRQSWEKVRVLEKEGKVVQVKVNGFNRGGVTCDLEGLRGFIPRSQLQEGENH- 274
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE+ A E G L+EG V I PYG
Sbjct: 275 ---EALVGKTLGVTFLEVNPETRKLVLSEKRAATAARFAELEVGQLVEGVVASIKPYGFF 331
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ + + + ++GER+ L+ + P +I+L+ A LE +
Sbjct: 332 VDLG--GISGLLHHSCVTGAELRDLREAFSQGERLSALIT-DLDPGRGRIALNTALLEGQ 388
Query: 451 PGLFVSDKE 459
PG + +KE
Sbjct: 389 PGELLVEKE 397
>gi|123965829|ref|YP_001010910.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
str. MIT 9515]
gi|123200195|gb|ABM71803.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9515]
Length = 408
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 26/250 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
++GK+ ++ D GG PG P E G + EVL + G
Sbjct: 137 IKGKIIALESDGLYVDIGGKAPGFMPKKECGLGVITNFKEKFPIGLEMEVLVIKEQNADG 196
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S+R L + +W +V + E I+V +N GGL ++GLR F+P+++L
Sbjct: 197 MVTISSRALILRQSWEKVENSAKNGELIQVSINGFNRGGLTCDVDGLRGFIPRSQL---- 252
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---LNLREGTLLEGTVKKIYPY 389
+ + + V + + V +N ++ L+LSE++A L+ G L+EG V I PY
Sbjct: 253 EDGQDYQSLVNKTLKVAFLEVNPESRKLVLSEKKALLVSKFSGLKLGQLIEGEVLGIKPY 312
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G + +G + SGLLH S+++ + ++ ++ EGE +K L+ + + +I L+ A LE
Sbjct: 313 GFFVDLGGA--SGLLHQSSITNGSIRNLREIFEEGELIKALITEIDLERGRIGLNTALLE 370
Query: 449 SEPGLFVSDK 458
+ PG + DK
Sbjct: 371 NSPGELIVDK 380
>gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 403
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 109/190 (57%), Gaps = 12/190 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+Q+++ + +VK + +N GG+ +EGLR F+P+++L N+
Sbjct: 197 ISCRALALRQSWDKVKQLEKEGKVAQVKVSGFNRGGVTCDLEGLRGFIPRSQLQEGENH- 255
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE++A E G L+EG V + PYG
Sbjct: 256 ---EALVGKTLGVAFLEVNPETRKLVLSEKKAATAARFAELEVGQLVEGHVAAVKPYGLF 312
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ ++G+ VK L+ + + P +I+L+ A LE +
Sbjct: 313 IDLG--GISGLLHQSMITGGSLRSLREVFDQGDTVKALITE-LDPGRGRIALNTAMLEGQ 369
Query: 451 PGLFVSDKEV 460
PG + +++
Sbjct: 370 PGELLINRDA 379
>gi|159902888|ref|YP_001550232.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888064|gb|ABX08278.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9211]
Length = 371
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 153 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 212
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ G V+ I P
Sbjct: 213 KAK----EELVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 268
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 269 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 326
Query: 448 ESEPGLFVSD 457
E EPG +SD
Sbjct: 327 EPEPGDMLSD 336
>gi|33239803|ref|NP_874745.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237329|gb|AAP99397.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 367
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ G V+ I P
Sbjct: 209 KAK----EELVAEYLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSD 457
E EPG ++D
Sbjct: 323 EPEPGDMLTD 332
>gi|427734242|ref|YP_007053786.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427369283|gb|AFY53239.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 304
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 30/264 (11%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +V+GK+ + D A GG R V++
Sbjct: 17 MDDFAAALEKHDYQFQKGQVVKGKVFQIDPDGAYVDIGGKSSAFIPRHEAALREVIDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VL F V + G+ +S R+L + W ++ ++++ + ++V+ N GG+
Sbjct: 77 VLPLHEELEFLIVQEQNAEGQVTISRRQLEMRQIWEKLLEMQETTKSVDVQVMNANKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--EAWAT 370
+ GLR F+P++ LL R NN LK G+++ V +N DTN L+LS+R ++ A+
Sbjct: 137 TVDLLGLRGFIPRSHLLER-NNLEALK---GQKLTVSFLEVNRDTNKLVLSQRLAKSSAS 192
Query: 371 LNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
+L E G L+EG + I P+G + I + S LLHI +S+ + S+ + + +K
Sbjct: 193 FSLLEIGQLVEGKITGIKPFGVFVDI--NGVSALLHIKQISQKFIESLEKVFQPSQEIKA 250
Query: 430 LVVK-SMFPDKISLSIADLESEPG 452
L++ +++LS LE+ PG
Sbjct: 251 LIIDMDEGKGRVALSTRVLENFPG 274
>gi|116072199|ref|ZP_01469466.1| RNA binding S1 [Synechococcus sp. BL107]
gi|116064721|gb|EAU70480.1| RNA binding S1 [Synechococcus sp. BL107]
Length = 412
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+ +++ + ++V + +N GG+ +EGLR F+P+++L N+
Sbjct: 206 ISCRALELRKSWDKVKVLEKEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 264
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+E VG+ + V +N T L+LSE+ A +E G L++G V + PYG
Sbjct: 265 ---QELVGKTLGVAFLEVNSGTRKLVLSEKRASVAARFQELEVGQLVDGLVASVKPYGLF 321
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
I +G SGLLH S ++ + S+ ++ +EG+RV L+ + P +I L+ A LE
Sbjct: 322 IDLG--GISGLLHQSAITNGSLRSIREVFDEGDRVSALIT-DLDPGRGRIGLNTALLEGP 378
Query: 451 PGLFVSDKE 459
PG + DK+
Sbjct: 379 PGELLIDKD 387
>gi|388491680|gb|AFK33906.1| unknown [Medicago truncatula]
Length = 409
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + ++AW R RQ++ + ++ K + N GG++ +EGL+ F+P S+++
Sbjct: 158 ILSLRDIQFELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVP----FSQMST 213
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL--NLREGTLLEGTVKKIYPYGAQ 392
+ +E + + ++ ++++ L+LS R+A A + L G+++ GTV+ + PYGA
Sbjct: 214 KSPGEEIIEFEVPLKFVEVDQEQARLVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAL 273
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-MFPDKISLSIADLESEP 451
I IG SGLLH+S +S R++ + +L G+ +KV+++ ++SLS LE P
Sbjct: 274 IDIG-GGISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 332
Query: 452 G 452
G
Sbjct: 333 G 333
>gi|254417151|ref|ZP_05030897.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196176129|gb|EDX71147.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 299
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 34/269 (12%)
Query: 215 FLLCDLKKDAEEF--------MVRGKM------GIVKDDDAIAMS---GGSGPGRPVVET 257
F + D K EE+ +VRGK+ G+ D +++ GG PV +
Sbjct: 15 FSMEDFAKALEEYDYEFSQGQVVRGKVHSYEMEGVYVDIGGKSLAYVPGGEVSVAPVEDW 74
Query: 258 GTVL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG 310
VL F + + G+ LS R+L W ++ Q++ + ++V+ T N G
Sbjct: 75 SEVLPLQEELEFLIIREQNAEGQITLSRRQLEINKIWDQLAQVQDSGKSLQVQVTGVNKG 134
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA--W 368
G+ +GLR F+P++ L R N L+ +G+ + V I + D + L+ S+REA
Sbjct: 135 GVTIDWQGLRGFIPRSHLNQRGN----LESLIGQSLTVSILEADRDRSKLVFSQREATRA 190
Query: 369 ATLNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERV 427
A+ ++ E G L+EGTV I P+G + + +GLLHI +S+ V S++D+ G+ +
Sbjct: 191 ASFSMLEVGQLVEGTVSNIRPFGVFVEL--EGITGLLHIKQVSQNMVESLTDMFEVGQSI 248
Query: 428 KVLVVK-SMFPDKISLSIADLESEPGLFV 455
K +V+ +++SLS LE+ PG V
Sbjct: 249 KAIVIDLDEGTNRVSLSTKVLENYPGEMV 277
>gi|157412946|ref|YP_001483812.1| ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387521|gb|ABV50226.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 400
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 132 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGIITNFKEKFSIGLEMEVLVIKEQNADG 191
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 192 MVTVSARALILRQSWEKVSSSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL---- 247
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---LNLREGTLLEGTVKKIYPY 389
+ + + VG+ + V +N ++ L+LSE++A NL G L+EG V + PY
Sbjct: 248 EDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKASLVSKLTNLELGQLIEGEVLAVKPY 307
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G I +G + SGLLH S+++ + S+ ++ EGE +K L+ + + +I L+ A LE
Sbjct: 308 GFFIDLGGA--SGLLHQSSLTNGSIRSLREVFREGEMIKALISEIDLEKGRIGLNTALLE 365
Query: 449 SEPGLFVSDKE 459
+ G + DK+
Sbjct: 366 NSAGELIIDKQ 376
>gi|78778915|ref|YP_397027.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
gi|78712414|gb|ABB49591.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 404
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 30/253 (11%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 136 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 195
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S R L + +W +V + E I+V +N GGL ++GLR F+P+++L
Sbjct: 196 MVTVSARALILRQSWEKVSNSAKNGELIDVLINGFNRGGLTCDVDGLRGFIPRSQL---- 251
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-----WATLNLREGTLLEGTVKKIY 387
+ + + VG+ + V +N ++ L+LSE++A +L+L G L+EG V +
Sbjct: 252 EDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKASLVSKLTSLDL--GQLIEGEVLAVK 309
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYG I +G + SGLLH S++++ + S+ ++ EGE +K L+ + + +I L+ A
Sbjct: 310 PYGFFIDLGGA--SGLLHQSSLTKGSIRSLREIFREGEIIKALISEIDLEKGRIGLNTAL 367
Query: 447 LESEPGLFVSDKE 459
LE+ G + DKE
Sbjct: 368 LENSAGELIIDKE 380
>gi|428776647|ref|YP_007168434.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428690926|gb|AFZ44220.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 394
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 95 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTR 154
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA---TLNLREGTLLEGTVKKIY 387
+ KE V + + ++ ++E+ N L+LS R A L+ G ++ G+V+ I
Sbjct: 155 -----QPKEDLVAQDLPLKFLEVDEERNRLVLSHRRALVERKMSGLKVGEVVIGSVRGIK 209
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + S + + + +KV+++ +ISLS
Sbjct: 210 PYGAFIDIG--GVSGLLHISEISHDHIDTPSSVFDINDELKVMIIDLDAERGRISLSTKQ 267
Query: 447 LESEPGLFVSDKEV 460
LE G ++++E+
Sbjct: 268 LEPIAGAMLNNREL 281
>gi|154359306|gb|ABS79675.1| At5g30510-like protein [Arabidopsis halleri subsp. halleri]
Length = 175
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 7 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 62
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 63 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 122
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++
Sbjct: 123 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMIL 160
>gi|357448761|ref|XP_003594656.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
gi|355483704|gb|AES64907.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
Length = 407
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + ++AW R RQ++ + ++ K + N GG++ +EGL+ F+P S+++
Sbjct: 156 ILSLRDIQFELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVP----FSQMST 211
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL--NLREGTLLEGTVKKIYPYGAQ 392
+ +E + + ++ ++++ L+LS R+A A + L G+++ GTV+ + PYGA
Sbjct: 212 KSPGEEIIEFEVPLKFVEVDQEQARLVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAF 271
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG SGLLH+S +S R++ + +L G+ +KV+++ ++SLS LE P
Sbjct: 272 IDIG-GGISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
Query: 452 G 452
G
Sbjct: 331 G 331
>gi|154359308|gb|ABS79676.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359310|gb|ABS79677.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359312|gb|ABS79678.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359314|gb|ABS79679.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359316|gb|ABS79680.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359318|gb|ABS79681.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359320|gb|ABS79682.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359322|gb|ABS79683.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359324|gb|ABS79684.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359326|gb|ABS79685.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359328|gb|ABS79686.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359330|gb|ABS79687.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359332|gb|ABS79688.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359334|gb|ABS79689.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359336|gb|ABS79690.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359338|gb|ABS79691.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359340|gb|ABS79692.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359342|gb|ABS79693.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359344|gb|ABS79694.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359346|gb|ABS79695.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359348|gb|ABS79696.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359350|gb|ABS79697.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359352|gb|ABS79698.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359358|gb|ABS79701.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359362|gb|ABS79703.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359364|gb|ABS79704.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359366|gb|ABS79705.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359368|gb|ABS79706.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359370|gb|ABS79707.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359372|gb|ABS79708.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 4 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 59
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 60 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 119
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++
Sbjct: 120 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMIL 157
>gi|154359360|gb|ABS79702.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 176
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 7 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 62
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+E + + + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 63 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 122
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++
Sbjct: 123 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMIL 160
>gi|33866517|ref|NP_898076.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8102]
gi|33633295|emb|CAE08500.1| 30S ribosomal protein S1, homolog A [Synechococcus sp. WH 8102]
Length = 367
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLALSVRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 209 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 323 EPEPGDMLTDPQ 334
>gi|116072655|ref|ZP_01469921.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
gi|116064542|gb|EAU70302.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
Length = 367
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 209 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 323 EPEPGDMLTDPQ 334
>gi|78212018|ref|YP_380797.1| 30S ribosomal protein S1 [Synechococcus sp. CC9605]
gi|78196477|gb|ABB34242.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 386
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 168 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 227
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 228 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 283
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 284 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 341
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 342 EPEPGDMLTDPQ 353
>gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
Length = 432
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 108/190 (56%), Gaps = 12/190 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+++++ + ++V + +N GG+ +EGLR F+P++ L N+
Sbjct: 226 ISCRALALRKSWDKVKELEKQGKVVQVTISGFNRGGVTCDLEGLRGFIPRSHLQDGENH- 284
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE+ A E G L+EGTV + PYG
Sbjct: 285 ---EALVGKTLGVAFLEVNAETRKLVLSEKRAATAARFAELEVGQLVEGTVVAVKPYGFF 341
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ + S+ ++ ++G+ VK L+ + + P +I+L+ A LE +
Sbjct: 342 VDLG--GISGLLHQSMITGGSMRSLREVFDQGDAVKALITE-LDPGRGRIALNTALLEGQ 398
Query: 451 PGLFVSDKEV 460
PG + +K+
Sbjct: 399 PGELLIEKDT 408
>gi|78185433|ref|YP_377868.1| 30S ribosomal protein S1 [Synechococcus sp. CC9902]
gi|78169727|gb|ABB26824.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 367
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 209 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 323 EPEPGDMLTDPQ 334
>gi|148238851|ref|YP_001224238.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847390|emb|CAK22941.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 367
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 149 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 208
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 209 KAK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 264
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 265 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 322
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 323 EPEPGDMLTDPQ 334
>gi|260436204|ref|ZP_05790174.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
gi|260414078|gb|EEX07374.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
Length = 363
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 145 GQLALSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 204
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 205 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 260
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 261 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 318
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 319 EPEPGDMLTDPQ 330
>gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|335049631|ref|ZP_08542618.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|333762366|gb|EGL39864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
Length = 635
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 39/286 (13%)
Query: 200 MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSG----PGRPVV 255
++++E+L YD E + D+ V GK+ V DD A G P + +
Sbjct: 281 VMSEELLDQYDYEENLKKGDV--------VEGKVVSVTDDAAFVSIGTKAEAILPKKEIA 332
Query: 256 -----ETGTVL-----FAEVLGRTLS--GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVK 303
+ G V+ F V+ T+ ++S ++ ++ W VRQ + ++ IE
Sbjct: 333 VPAPEKAGDVVHVGDEFKVVIASTVKEDSTIVVSLVKMQKEADWEEVRQAYENDQLIECV 392
Query: 304 FTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363
E N GL+ I+ LR F+P ++ V+ L VG+ V+I ++E N L+LS
Sbjct: 393 GKETNKAGLVVSIKSLRGFIPLSQ--GDVHFVKSLDNLVGQTFQVKIIDLDEHKNRLVLS 450
Query: 364 -------EREAW---ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
EREA A ++ E T ++GTV KI PYGA + +G GLLHIS++S R
Sbjct: 451 RKAVLEVEREAKRAEALEHIEENTEMDGTVVKIMPYGAFVDLG--GVEGLLHISDISWKR 508
Query: 414 VTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
+ +V D+L+ G+ V VLV + ++ISLS+ L+ P + +K
Sbjct: 509 IGAVEDVLSVGDTVHVLVQQFDRERNRISLSMKALQKNPWIAAIEK 554
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG ++V + + + + N + LS ++ W A G ++EG VKKI GA + I
Sbjct: 518 VGDTVHVLVQQFDRERNRISLSMKALQKNPWIAAIEKFAVGDVVEGEVKKILNIGAILAI 577
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESE 450
D GLLHIS ++ R +V DL+ G++++V ++K + PD K++LS+ + +E
Sbjct: 578 -DPEIQGLLHISALTEQRGAAVKDLVAIGDKMQVKIIK-IDPDKHKVALSVLAIRNE 632
>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 400
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 28/261 (10%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + ++D A+ G T+L V GR
Sbjct: 63 DEILVDIGAKAEGVVPSREMQTLSEEDRAALKVGD----------TILVFVVQSEDKEGR 112
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL----- 328
+LS + ++ +W +++ + E I + +N GGLL ++G+R F+P +++
Sbjct: 113 AILSIDKARQEKSWRALQEYYERGEIIYARVKNYNKGGLLVDLDGVRGFVPASQVSSVSR 172
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTL 378
S +E+ V + +++ IN + N LILSER+A +L+EG +
Sbjct: 173 ASEAQKQSEMARLVNVELPLKVIEINRNRNRLILSERQALVETRETKKDELLASLQEGDV 232
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
EG V + +G + IG ++ GL+H+S +S +RV S++L G++VKV ++
Sbjct: 233 REGVVSSVCDFGVFVDIGGAD--GLVHLSEISWSRVKHPSEVLKVGDKVKVSILNIDHER 290
Query: 439 K-ISLSIADLESEPGLFVSDK 458
K I+LSI +SEP V+++
Sbjct: 291 KRIALSIKRTQSEPWTRVAER 311
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G+ I G + +E+ SRV + +E+ KVG ++ V I I+ + + LS +
Sbjct: 244 GVFVDIGGADGLVHLSEISWSRVKHPSEVL-KVGDKVKVSILNIDHERKRIALSIKRTQS 302
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E W + R G ++EGTV ++ +GA +RI D GL+H+S M R+ D+L+E
Sbjct: 303 EPWTRVAERYQLGQIVEGTVTQLASFGAFVRIEDGV-EGLIHVSEMGDERIQHPRDVLSE 361
Query: 424 GERVKVLVVKSMFPDKISLSIA-DLESEP 451
G+ V+ +++ + P + + ++ L+ EP
Sbjct: 362 GQVVQARIIR-IDPARKRMGLSLRLQQEP 389
>gi|88807804|ref|ZP_01123315.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
gi|88787843|gb|EAR18999.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
Length = 368
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 150 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 209
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ GTV+ I P
Sbjct: 210 KPK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGTVRGIKP 265
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 266 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 323
Query: 448 ESEPGLFVSDKE 459
E EPG ++D +
Sbjct: 324 EPEPGDMLTDPQ 335
>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 399
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 28/261 (10%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + ++D A+ G T+L V GR
Sbjct: 62 DEILVDIGAKAEGVIPSREMQTLSEEDRAALKVGD----------TILVFVVQSEDKEGR 111
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--LSR 331
+LS + ++ +W +++ + + I + +N GGLL ++G+R F+P +++ +SR
Sbjct: 112 AILSIDKARQEKSWRALQECYERGDIIYARVKNYNKGGLLVDLDGVRGFVPASQVSSISR 171
Query: 332 VNNF---TELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTL 378
V+ +E+ V + +++ IN + N LILSER+A +LREG +
Sbjct: 172 VSETQKQSEMARLVNVELPLKVIEINRNRNRLILSERQALVETRESKKDELLTSLREGDV 231
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+G V + +G + IG ++ GL+H+S +S +RV ++L G++VKV ++
Sbjct: 232 RDGVVSSVCDFGVFVDIGGAD--GLVHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHER 289
Query: 439 K-ISLSIADLESEPGLFVSDK 458
K I+LSI +SEP V+++
Sbjct: 290 KRIALSIKRTQSEPWTRVAER 310
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G+ I G + +E+ SRV + E+ KVG ++ V I I+ + + LS +
Sbjct: 243 GVFVDIGGADGLVHLSEISWSRVKHPGEVL-KVGDKVKVAILNIDHERKRIALSIKRTQS 301
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E W + R G ++EGT+ ++ +GA RI D GL+HIS M R+ ++L+E
Sbjct: 302 EPWTRVAERYQLGQIVEGTITQLASFGAFARIEDGV-EGLIHISEMGDERIQHPREVLSE 360
Query: 424 GERVKVLVVK 433
G+ V+ +++
Sbjct: 361 GQVVQARIIR 370
>gi|194477334|ref|YP_002049513.1| 30S ribosomal protein S1-like B, putative [Paulinella
chromatophora]
gi|171192341|gb|ACB43303.1| 30S ribosomal protein S1-like B, putative [Paulinella
chromatophora]
Length = 368
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L +W ++ Q+++ + ++VK +N GGL +EGLR F+P ++L N
Sbjct: 162 ISARALALHQSWEKLIQLEKDGDSVQVKVNGFNRGGLTCELEGLRGFIPCSQLQDGEN-- 219
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYPYGAQ 392
++ VG+ + + +N + LILSE+ A L+ G L+EG V + PYG
Sbjct: 220 --YEKMVGKTIRAALIEVNSSSQKLILSEKRATTATRFAQLQIGQLIEGQVTVVKPYGFF 277
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ IG N GLLH S ++ + + + +GER+K L+ + P +I L+ A LE +
Sbjct: 278 VDIGSIN--GLLHYSCITNGNLREPNKIFKQGERIKALIT-DLDPTRGRIGLNTALLEGK 334
Query: 451 PGLFVSDKE 459
PG + KE
Sbjct: 335 PGELLIQKE 343
>gi|124025115|ref|YP_001014231.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL1A]
gi|123960183|gb|ABM74966.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
NATL1A]
Length = 369
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 151 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 210
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ G V+ I P
Sbjct: 211 KAK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 266
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 267 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 324
Query: 448 ESEPGLFVSD 457
E EPG ++D
Sbjct: 325 EPEPGDMLTD 334
>gi|72383525|ref|YP_292880.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL2A]
gi|72003375|gb|AAZ59177.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 369
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ + AW RVRQ+++ + I + N GG L R+EGLR F+P + + +R
Sbjct: 151 GQLSLSIRRIEYQRAWERVRQLQKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTR 210
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
+E V + ++ ++E+ N L+LS R A +N L G ++ G V+ I P
Sbjct: 211 KAK----EELVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 266
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + +LN +++KV+++ +ISLS L
Sbjct: 267 YGAFIDIG--GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKAL 324
Query: 448 ESEPGLFVSD 457
E EPG ++D
Sbjct: 325 EPEPGDMLTD 334
>gi|427419513|ref|ZP_18909696.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425762226|gb|EKV03079.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 292
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 25/245 (10%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG----PGRPVVETGTVLFAE------------VLGRTLS 271
+V GK+ DD A GG P R + +V E V + +
Sbjct: 24 VVTGKVDSHTDDGAYIDIGGKAAAFLPAREASVSSSVTLEEAVPIGSERQFLIVRDQDAN 83
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS R+L K W + + + + ++V T N GG++ +EGLR F+P++ L++
Sbjct: 84 GQVILSIRKLEIKEVWVHLVEREANKDILDVTVTGTNKGGVIADVEGLRGFVPRSHLVNP 143
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+ T L VG + V +NE+ N L+LS R A T L + G L++G V I P
Sbjct: 144 PEDLTTL---VGHTISVAFLEVNEENNKLVLSGRNAARTTALGQLNPGQLIDGKVGSIKP 200
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + D R GLLH+ +S++ V S+ D+ G+ VK +V+ +ISLS L
Sbjct: 201 FGVFVDF-DGVR-GLLHVKQISKSFVPSIGDVFEVGQPVKAVVLNLDEERGRISLSTKVL 258
Query: 448 ESEPG 452
E PG
Sbjct: 259 EKYPG 263
>gi|427722325|ref|YP_007069602.1| 30S ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
gi|427354045|gb|AFY36768.1| SSU ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
Length = 327
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+ KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----QAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGEVVVGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFQVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE EPG + ++E+
Sbjct: 267 LEPEPGDMLKNREL 280
>gi|254415806|ref|ZP_05029564.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196177512|gb|EDX72518.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 323
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A +N L G ++ G+V+ I P
Sbjct: 154 KPK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGSVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS L
Sbjct: 210 YGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKE 459
E EPG +++++
Sbjct: 268 EPEPGDMINNRD 279
>gi|159903074|ref|YP_001550418.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888250|gb|ABX08464.1| 30S ribosomal protein S1-like protein B, putative Nbp1
[Prochlorococcus marinus str. MIT 9211]
Length = 416
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 12/192 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S R L + +W V Q+++ + +EV +N GG+ +EGLR F+P+++ L +
Sbjct: 205 GMVTISCRALVLRKSWETVMQLEKDGKTVEVTINGFNRGGVTCDLEGLRGFIPRSQ-LEQ 263
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N L VG+++ V +N D+ LILSE++A E G ++ G + I P
Sbjct: 264 TENHESL---VGKKLCVAFIEVNPDSRKLILSEKKAATAARFAELEIGQIVAGEILAIKP 320
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIAD 446
YG + +G SGLLH S ++ + S+ ++ ++GE +K L+ + P +I L+ A
Sbjct: 321 YGFFVDLG--GVSGLLHQSMITNGSIRSLREVFSQGESIKALIT-DLDPKRGRIGLNTAL 377
Query: 447 LESEPGLFVSDK 458
LE PG + +K
Sbjct: 378 LEGPPGEILVEK 389
>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
gi|194703708|gb|ACF85938.1| unknown [Zea mays]
gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
gi|223948553|gb|ACN28360.1| unknown [Zea mays]
Length = 401
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + +++AW R RQ++ + + K N GG++ ++GL+ F+P S+V++
Sbjct: 157 ILSLQAIQQELAWERCRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVP----FSQVSS 212
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
T +E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 213 KTTAEELLEKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 272
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 273 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
Query: 452 G 452
G
Sbjct: 331 G 331
>gi|413955874|gb|AFW88523.1| 30S ribosomal protein S1 [Zea mays]
Length = 401
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + +++AW R RQ++ + + K N GG++ ++GL+ F+P S+V++
Sbjct: 157 ILSLQAIQQELAWERCRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVP----FSQVSS 212
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
T +E + + + ++ ++E+ L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 213 KTTAEELLEKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAF 272
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV +S +L G+ +KV+++ ++SLS LE P
Sbjct: 273 IDIGGIN--GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
Query: 452 G 452
G
Sbjct: 331 G 331
>gi|148242687|ref|YP_001227844.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147850997|emb|CAK28491.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 397
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 12/190 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + AW +VRQ+++ + ++VK T +N GG +EGLR F+P+++L N
Sbjct: 191 VSCRALALRQAWDKVRQLEKEGKVVQVKITGFNRGGCTCDLEGLRGFIPRSQL----NEG 246
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSE---REAWATLNLREGTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N DT L+LSE A +L G L+ G V + PYG
Sbjct: 247 ENHEALVGKTVGVAFLEVNPDTRKLVLSEKKAAMAAFFADLEVGQLVSGLVTSVKPYGFF 306
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ + + ++ + G+ ++ L+ + + P +I L+ A LE++
Sbjct: 307 VDLG--GVSGLLHHSCITGGTMRELREIFDSGDSLQALITE-LDPGRGRIGLNTALLENQ 363
Query: 451 PGLFVSDKEV 460
PG + +KE
Sbjct: 364 PGELLINKEA 373
>gi|11465811|ref|NP_053955.1| ribosomal protein S1 [Porphyra purpurea]
gi|1710701|sp|P51345.1|RR1_PORPU RecName: Full=30S ribosomal protein S1, chloroplastic
gi|1276811|gb|AAC08231.1| 30S ribosomal protein S1 (chloroplast) [Porphyra purpurea]
Length = 263
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + ++V+ +N GG++ +EG+ F+P + L
Sbjct: 88 SRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHL-- 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
NNF++ + + +++ + E +N+LILS R A A+ NL G ++EG + +I
Sbjct: 146 --NNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQIT 203
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
PYG I+ G N GL+HIS ++ +V + G+ +K +++
Sbjct: 204 PYGLFIKAG--NLKGLVHISEINVKQVERIPSQFKIGDTIKAVII 246
>gi|56750057|ref|YP_170758.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
gi|81300400|ref|YP_400608.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
gi|3122813|sp|O33698.1|RS1_SYNE7 RecName: Full=30S ribosomal protein S1
gi|2570205|gb|AAB82045.1| ribosomal protein S1 of 30S ribosome [Synechococcus elongatus PCC
7942]
gi|7328457|dbj|BAA92864.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
gi|22002498|gb|AAM82650.1| ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|56685016|dbj|BAD78238.1| nucleic acid binding protein [Synechococcus elongatus PCC 6301]
gi|81169281|gb|ABB57621.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
Length = 295
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R L + AW RV ++++ + ++VK T N GG+ +EGLRAF+P+ S
Sbjct: 90 GQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPR----SH 145
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+N +L G+ + V +N L+LSER+A T +RE G L+ G V + P
Sbjct: 146 LNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + +G + + LL I+ +S+ V V + G+ ++ LVV +ISLS L
Sbjct: 206 FGVFVDLGGA--TALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVL 263
Query: 448 ESEPG 452
E+ PG
Sbjct: 264 ENHPG 268
>gi|116075332|ref|ZP_01472592.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
gi|116067529|gb|EAU73283.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
Length = 439
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+ +++ + ++VK + +N GG+ +EGLR F+P+++L N+
Sbjct: 233 ISCRALALRQSWDKVKVLEKEGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGENH- 291
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE+ A E G L+EG V + PYG
Sbjct: 292 ---ESLVGKTLGVAFLEVNSETRKLVLSEKRAATAARFSELEVGQLVEGHVVAVKPYGFF 348
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S ++ + S+ ++ + G+ VK L+ + + P +I+L+ A LE +
Sbjct: 349 VDLG--GISGLLHQSVITGGSLRSLREVFDHGDLVKALITE-LDPGRGRIALNTAMLEGQ 405
Query: 451 PGLFVSDKE 459
PG + +K+
Sbjct: 406 PGELLVEKD 414
>gi|408790528|ref|ZP_11202146.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
gi|408520075|gb|EKK20169.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
Length = 405
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 17/193 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL W ++ + +E I VK T GGL+ +G+R F+P + +
Sbjct: 88 NGSYLLSVRRLEALKIWDEIKDKESKDENITVKVTRPVKGGLVVNADGVRGFIPASMITD 147
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLE 380
++L + G+ + V+I + + N LILS R +A + NL G ++E
Sbjct: 148 HF--VSDLNQYKGQELEVKIIEVVPEENRLILSHRAIAEKNRKQAREEIMNNLAAGDVVE 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--D 438
GTV ++ +GA I +G + GL+HIS +S V +D+L+ GE+VKV V+ S+ P D
Sbjct: 206 GTVARLTNFGAFIDLGGID--GLVHISEISYDHVNKAADVLSVGEKVKVKVL-SVEPERD 262
Query: 439 KISLSIADLESEP 451
+ISLSI L+ P
Sbjct: 263 RISLSIKQLQPGP 275
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + RK A + + +E G + G+ + +E+
Sbjct: 174 RLILSHRAIAEKNRKQAREEIMNNLAAGDVVEGTVARLTNFGAFIDLGGIDGLVHISEIS 233
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGT 382
VN ++ VG ++ V++ + + + + LS ++ W + + G++L+GT
Sbjct: 234 YDHVNKAADVL-SVGEKVKVKVLSVEPERDRISLSIKQLQPGPWDDIEEKAPVGSVLDGT 292
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
VK++ +GA + + + GL+HIS +S + SD+L G++++V V+ S+ P+ ++
Sbjct: 293 VKRLVDFGAFVEVF-AGVEGLVHISQISHEHIDKPSDVLKSGQKIQVKVL-SIDPEEHRL 350
Query: 441 SLSIADLESEP 451
+LSI LE EP
Sbjct: 351 ALSIKALE-EP 360
>gi|317470634|ref|ZP_07930019.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
3_2_56FAA]
gi|316901769|gb|EFV23698.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
3_2_56FAA]
Length = 309
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 107/187 (57%), Gaps = 14/187 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R + +AW R++++ + + + GG++ +EG+R F+P ++L
Sbjct: 94 GNIMLSKREANQVLAWDRLQKLMEEETVLSLTVGGVVNGGVIVYVEGIRGFIPASQL--S 151
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-----AWATLN-----LREGTLLEG 381
+N +L + + + +I ++E N L+LS +E A LN +R G +LEG
Sbjct: 152 LNYVEDLNTWLKKEVEAKIITVDESRNKLVLSAKEVEKAKAQEELNHKMAMMRPGMVLEG 211
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
TV+ I PYGA + +GD SGL+HIS S R+ S +++ EG++VKV V+K + +KIS
Sbjct: 212 TVENIMPYGAFVDLGDG-LSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLK-IADNKIS 269
Query: 442 LSIADLE 448
LS+ LE
Sbjct: 270 LSMKALE 276
>gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens]
Length = 381
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S +++ AW + + + E + + N GG + +EGLRAFLP + ++
Sbjct: 137 GQVTVSIKKIMYAKAWETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGS 196
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLNLREGTLLEGTVKKIYP 388
+ +G+++ ++ +N++ N L++S R A + +++ G + +GTV + P
Sbjct: 197 GGASEAM---IGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKP 253
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADL 447
YGA + I SGLLHIS +S RV + L G +K +V+ +I+LS L
Sbjct: 254 YGAFVEI--MGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTL 311
Query: 448 ESEPGLFVSD 457
E EPG + D
Sbjct: 312 EPEPGDMLRD 321
>gi|123968121|ref|YP_001008979.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123198231|gb|ABM69872.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. AS9601]
Length = 401
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 26/251 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 133 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 192
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 193 MVTVSARALILRQSWEKVSNSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL---- 248
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPY 389
+ + + VG+ + V +N ++ L+LSE++A L G L+EG V + PY
Sbjct: 249 EDGQDYQSFVGKNLKVAFLEVNPESRKLVLSEKKASLVSKLTSLELGQLIEGEVLAVKPY 308
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G I +G + SGLLH S+++ + S+ ++ EGE +K L+ + + +I L+ A LE
Sbjct: 309 GFFIDLGGA--SGLLHQSSLTNGSIRSLREVFREGEVIKALISEIDLEKGRIGLNTALLE 366
Query: 449 SEPGLFVSDKE 459
+ G + DK+
Sbjct: 367 NSAGELIIDKQ 377
>gi|170077576|ref|YP_001734214.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
gi|169885245|gb|ACA98958.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
Length = 326
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
+ KE VG+ + ++ ++ED N L+LS R A +N L G ++ G+V+ I
Sbjct: 154 -----QAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGEVVVGSVRGIK 208
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + + +KV+++ +ISLS
Sbjct: 209 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFQVNDELKVMIIDLDAERGRISLSTKQ 266
Query: 447 LESEPGLFVSDKEV 460
LE EPG + ++++
Sbjct: 267 LEPEPGDMLKNRDL 280
>gi|254526566|ref|ZP_05138618.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
gi|221537990|gb|EEE40443.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
Length = 401
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 26/251 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 133 ISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 192
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 193 MVTVSARALILRQSWEKVSSSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL---- 248
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPY 389
+ + + VG+ + V +N ++ L+LSE++A L G L+EG V + PY
Sbjct: 249 EDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKASLVSKLTSLELGQLIEGEVLAVKPY 308
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G I +G + SGLLH S+++ + S+ ++ EGE +K L+ + + +I L+ A LE
Sbjct: 309 GFFIDLGGA--SGLLHQSSLTNGSIRSLREVFREGEMIKALISEIDLEKGRIGLNTALLE 366
Query: 449 SEPGLFVSDKE 459
+ G + DK+
Sbjct: 367 NSAGELIIDKQ 377
>gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens]
Length = 381
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S +++ AW + + + E + + N GG + +EGLRAFLP + ++
Sbjct: 137 GQVTVSIKKIMYAKAWETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGS 196
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLNLREGTLLEGTVKKIYP 388
+ +G+++ ++ +N++ N L++S R A + +++ G + +GTV + P
Sbjct: 197 GGASEAM---IGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKP 253
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADL 447
YGA + I SGLLHIS +S RV + L G +K +V+ +I+LS L
Sbjct: 254 YGAFVEI--MGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTL 311
Query: 448 ESEPGLFVSD 457
E EPG + D
Sbjct: 312 EPEPGDMLRD 321
>gi|298708733|emb|CBJ30695.1| Plastid ribosomal protein S1 [Ectocarpus siliculosus]
Length = 441
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S RR+ + AW +V ++ + E N GG + +EGLR FLP + +
Sbjct: 185 GQVQVSIRRIQYEKAWSKVEDMQAEDVVFEGPIIAVNRGGAIVLVEGLRGFLPGSHMCGG 244
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+ ++ VG+ M + +N + + L++S R A ++E G ++EG VK I P
Sbjct: 245 LPT----EDAVGKVMKYKFLEVNAENSKLVVSNRRAVLEQEMKELSRGDVVEGHVKAIKP 300
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADL 447
YGA + I SGLLHIS +S R+ + ++ G ++K +++ +I+LS L
Sbjct: 301 YGAFVEI--RGMSGLLHISQISFDRIEDLPSIMQMGMKLKCMIIDHDKVNGRIALSTKTL 358
Query: 448 ESEPGLFVSDKE 459
E EPG + + +
Sbjct: 359 EPEPGDMIKNPQ 370
>gi|167746216|ref|ZP_02418343.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662]
gi|167654209|gb|EDR98338.1| S1 RNA binding domain protein [Anaerostipes caccae DSM 14662]
Length = 309
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 107/187 (57%), Gaps = 14/187 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R + +AW R++++ + + + GG++ +EG+R F+P ++L
Sbjct: 94 GNIVLSKREANQVLAWDRLQKLMEEETVLSLTVGGVVNGGVIVYVEGIRGFIPASQL--S 151
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-----AWATLN-----LREGTLLEG 381
+N +L + + + +I ++E N L+LS +E A LN +R G +LEG
Sbjct: 152 LNYVEDLNTWLKKEVEAKIITVDESRNKLVLSAKEVEKAKAQEELNHKMAMMRPGMVLEG 211
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
TV+ I PYGA + +GD SGL+HIS S R+ S +++ EG++VKV V+K + +KIS
Sbjct: 212 TVENIMPYGAFVDLGDG-LSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLK-IADNKIS 269
Query: 442 LSIADLE 448
LS+ LE
Sbjct: 270 LSMKALE 276
>gi|240144542|ref|ZP_04743143.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
gi|257203431|gb|EEV01716.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
Length = 303
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P +++
Sbjct: 82 AGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAFIPASQI-- 139
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
++ + +G+ + V++ ++ + L+LS + + GT++E
Sbjct: 140 TLDYVEDTDAWIGKEIEVRVITVDAEKEKLVLSGKAVAREAEAEERNHKISMIVPGTVME 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+ + PYGA I +G+ SGL+HIS + R+ S++L EG++VKV VV + +KI
Sbjct: 200 GTVESLMPYGAFINLGNG-LSGLVHISQICERRIKKPSEVLKEGQKVKVKVVNT-NDNKI 257
Query: 441 SLSIADLESE 450
SLS+ L+ E
Sbjct: 258 SLSMKALQEE 267
>gi|126695894|ref|YP_001090780.1| 30S ribosomal protein S1-like protein B, Nbp1 [Prochlorococcus
marinus str. MIT 9301]
gi|126542937|gb|ABO17179.1| 30S ribosomal protein S1-like protein B, putative Nbp1
[Prochlorococcus marinus str. MIT 9301]
Length = 401
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 26/251 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFA------------EVL---GRTLSG 272
+ GK+ ++ D GG PG P E G + EVL + G
Sbjct: 133 ISGKVIAIESDGLYIDIGGKAPGYMPKKECGLGVITNFKEKFSIGLEMEVLVIKEQNADG 192
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+S R L + +W +V + E I V +N GGL ++GLR F+P+++L
Sbjct: 193 MVTVSARALILRQSWEKVSSSAKNGELINVLINGFNRGGLTCDVDGLRGFIPRSQL---- 248
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPY 389
+ + + VG+ + V +N ++ L+LSE++A L G L+EG V + PY
Sbjct: 249 EDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKASLVSKLTSLELGQLIEGEVLAVKPY 308
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G I +G + SGLLH S+++ + S+ ++ EGE +K L+ + + +I L+ A LE
Sbjct: 309 GFFIDLGGA--SGLLHQSSLTNGSIRSLREVFREGEMIKALISEIDLEKGRIGLNTALLE 366
Query: 449 SEPGLFVSDKE 459
+ G + DK+
Sbjct: 367 NSAGELIIDKQ 377
>gi|336427250|ref|ZP_08607254.1| hypothetical protein HMPREF0994_03260 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010103|gb|EGN40090.1| hypothetical protein HMPREF0994_03260 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 304
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 23/229 (10%)
Query: 234 GIVKDDDAIAMSGGSGPGRPVVE---TGTVLFAEVLGRTLS-GRPLLSTRRLFRKMAWHR 289
GI+K +D MSG PG ++E G + A V+ G LS + + +AW
Sbjct: 50 GIIKAED---MSGD--PGFNILEDVKVGDEIEATVVKTDDGEGNIKLSKKEAVQVLAWDI 104
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
++ N+ I VK +E G + +EG+R F+P ++L + +L+ +GR + V+
Sbjct: 105 LKGYMAENKNIRVKISEIVKAGAVAFVEGIRGFIPASQL--SLTYVEDLEPWLGRELEVR 162
Query: 350 ITRINEDTNDLILS----ERE-AWATLN-----LREGTLLEGTVKKIYPYGAQIRIGDSN 399
+ ++E+ N L+LS E+E A +N L G++LEG V+ + PYGA + + D
Sbjct: 163 VITVDEEKNKLVLSAKVIEKERAVEDINHKISMLVPGSILEGVVESLMPYGAFVSLPD-G 221
Query: 400 RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
SGL+HIS +S+ R+ S++L G++VKV V+ + +KISLSI +E
Sbjct: 222 LSGLVHISQISQKRIKKPSEVLTVGDKVKVKVLNTN-DNKISLSIKAVE 269
>gi|378787382|gb|AFC40013.1| ribosomal protein S1 [Porphyra umbilicalis]
Length = 263
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + ++V+ +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHL-- 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
N+F + + + +++ + E +N+LILS R A A+ NL G ++EG + +I
Sbjct: 146 --NSFHQNTPSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQIT 203
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
PYG I+ G N GL+HIS ++ +V ++ GE +K +++
Sbjct: 204 PYGLFIKSG--NLKGLVHISEINVKQVEKITSKFKIGETIKAVII 246
>gi|291538052|emb|CBL11163.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4]
Length = 303
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P +++
Sbjct: 82 AGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAFIPASQI-- 139
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
++ + +G+ + V++ ++ + L+LS + + GT++E
Sbjct: 140 TLDYVEDTDAWIGKEIEVRVITVDPEKEKLVLSGKAVAREAEAEERNHKISMIVPGTVME 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+ + PYGA I +G+ SGL+HIS + R+ S++L EG++VKV VV + +KI
Sbjct: 200 GTVESLMPYGAFINLGNG-LSGLVHISQICERRIKKPSEVLKEGQKVKVKVVNT-NDNKI 257
Query: 441 SLSIADLESE 450
SLS+ L+ E
Sbjct: 258 SLSMKALQEE 267
>gi|449017516|dbj|BAM80918.1| chloroplast ribosomal protein S1 precursor [Cyanidioschyzon merolae
strain 10D]
Length = 447
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--- 328
G+ +S +R+ W +++Q +E ++ + N GG RI+ LR FLP + +
Sbjct: 181 GQLRVSIKRIEFTRTWEKLQQALANDEVVQCEVVAVNRGGASVRIDCLRGFLPASHIVLV 240
Query: 329 ---LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGT 382
+ + + L++ +G+ + V++ ++ + + L++S R A A +L+ GT+LEGT
Sbjct: 241 PGFIPGLPSDPRLEDLMGKELPVKLLEVDPEKSRLVVSHRRALAEKSLKNVETGTILEGT 300
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKIS 441
V+ I PYG I G SGLLHIS +S V ++ + G++VK LVV + ++S
Sbjct: 301 VRGIKPYGVFIESG--GVSGLLHISQISHEHVEDLTSVFTLGDKVKALVVSQDREKGRVS 358
Query: 442 LSIADLESEPG 452
LS LE EPG
Sbjct: 359 LSTKVLEPEPG 369
>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
Length = 405
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 15/191 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEGVRGFVPASMIENR 147
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLREGTLLEG 381
+L + G+ + +I IN + LILS RE A A + L G ++EG
Sbjct: 148 F--VQDLNQYKGQTIRAKIIEINAADSRLILSRREVLNEERSAALARIFDELSVGDVIEG 205
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
V ++ +GA I +G + GL+H+S +S RV+ SD+L+ GE VKV V+ + P++
Sbjct: 206 KVARMTNFGAFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVL-GLDPERER 262
Query: 442 LSIADLESEPG 452
+S++ ++PG
Sbjct: 263 ISLSIKATQPG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + R A R+ + + IE K G + G+ + +E+
Sbjct: 173 RLILSRREVLNEERSAALARIFDELSVGDVIEGKVARMTNFGAFIDLGGVDGLVHVSEIS 232
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGT 382
RV+ +++ VG + V++ ++ + + LS + W T + GT+LEGT
Sbjct: 233 HERVSQPSDVL-SVGEEVKVKVLGLDPERERISLSIKATQPGPWDTAAEKAPAGTVLEGT 291
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
VK++ +GA + + GL+H+S +S + + SD+L G++V+V V+ + P+ ++
Sbjct: 292 VKRVVDFGAFVEVF-PGVEGLVHVSQISHKHIANPSDVLTAGDKVQVKVL-DVNPERQRL 349
Query: 441 SLSIADLESEPG 452
SLSI LE P
Sbjct: 350 SLSIKALEEAPA 361
>gi|339443510|ref|YP_004709515.1| 30S ribosomal protein S1 [Clostridium sp. SY8519]
gi|338902911|dbj|BAK48413.1| ribosomal protein S1 [Clostridium sp. SY8519]
Length = 231
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 14/173 (8%)
Query: 285 MAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGR 344
+AW ++ + K+ +EV+ + G++ +EG+R F+P + L R + ++L E +GR
Sbjct: 30 LAWEKIGKDKEAGTDLEVEISGIVNKGVIALVEGIRGFIPASRLSLR--HVSDLNEWLGR 87
Query: 345 RMYVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIR 394
+ V++ + + N L+LS RE A ++ GT+LEG V+ I YGA I
Sbjct: 88 TVRVRVIEADPERNKLVLSAREILREERDSQRARRVSEIKTGTVLEGKVETIKDYGAFID 147
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
+GD SGLLHIS ++R R+ SD L EG+ V V V+ S KI LSI L
Sbjct: 148 LGDGV-SGLLHISQIARERIKHPSDRLKEGDTVTVKVI-SNKDGKIGLSIRAL 198
>gi|428221436|ref|YP_007105606.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427994776|gb|AFY73471.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 300
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS R L K AW ++ ++ + + N GG++ ++G+R F+P++ L+ +
Sbjct: 95 GEVKLSIRLLKIKQAWLNLQDLQAEGKAFNCRVINVNKGGVVADVQGIRGFIPRSHLVDK 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIYP 388
VN + + VG+ + V + +++ N L+LS +A A L +G L+ GTV + P
Sbjct: 155 VN----MNDLVGKTLSVVLVELDQTRNKLVLSNTQAVKASAMSQLSKGQLVTGTVTSLRP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+GA I G +GLLHI +S+ + V+ + GE +K +++ ++ISLS L
Sbjct: 211 FGAFIDFG--GVTGLLHIKEISQKYIGDVNSVFAIGEPIKAVILDIDESRNRISLSTKIL 268
Query: 448 ESEPGLFVSDKE 459
E+ G F+ +E
Sbjct: 269 ENHAGEFIDQRE 280
>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
Length = 384
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 112/191 (58%), Gaps = 22/191 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS + + + AW ++ + + E IE + E GGL+ + G+R F+P A L+ R V
Sbjct: 81 ILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKGGLVVDV-GVRGFIP-ASLVERHYV 138
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F++ K G+ + +++T I++D N LILS+R + +L G ++EG
Sbjct: 139 EDFSDYK---GKPLRLKVTEIDKDNNKLILSQRAVLDAEIEEKKKQVLHSLSTGDVVEGK 195
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
V+++ +GA + +G + GL+HIS ++ RV SD+L+EG+ V+V V+ S+ PD ++
Sbjct: 196 VQRLTSFGAFVDVGGVD--GLVHISQIAHERVEHPSDVLSEGQEVRVKVL-SVDPDSERV 252
Query: 441 SLSIADLESEP 451
SLSI ++ + P
Sbjct: 253 SLSIKEMLAGP 263
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ D+ + LS +E W + + G ++ GTVK++ +GA + I
Sbjct: 235 GQEVRVKVLSVDPDSERVSLSIKEMLAGPWENIESKFSAGDIVTGTVKRLVSFGAFVEIA 294
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESE 450
GL+HIS +S+ + + ++L EG++V+ V++ D ++SLSI + E
Sbjct: 295 -PGVEGLVHISQISKRHIGTPQEVLEEGQQVQAKVLEVSEADRRVSLSIREASEE 348
>gi|160947387|ref|ZP_02094554.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
gi|158446521|gb|EDP23516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Parvimonas
micra ATCC 33270]
Length = 674
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 22/204 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LSTRR+ W + + E +E + + GGLL ++G+ AF+P + + S
Sbjct: 360 GNVVLSTRRVESLKDWQNLVEKFNNKELVEAEVVKEVKGGLLATVDGINAFIPASHITTS 419
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE------------AWATLNLREGTL 378
V +FT +G+++ I I+E ++LS RE AW+ L + G +
Sbjct: 420 FVKDFTPY---IGKKLECAIINIDERKKKIVLSRREVEEKELQEKLDLAWSKLAV--GDV 474
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
L GTV+K+ +GA + +GD + GL+H+S++S R+ SD+L+ G+ V+V+++K +
Sbjct: 475 LRGTVRKLTDFGAFVNLGDVD--GLIHVSDISWNRIKKPSDILSVGDEVEVIILKLNRER 532
Query: 438 DKISLSIADLESEP-GLFVSDKEV 460
++ISL + L +P LF+ + V
Sbjct: 533 NRISLGLKQLTKKPFELFLENNSV 556
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
G ++ GTV + +GA +++ + N GL+HIS +S + SD+LN GE V+V ++
Sbjct: 557 GDVVTGTVINLVDFGAFVKLKE-NVEGLVHISQISHDHIEKASDVLNIGEEVQVKIINID 615
Query: 435 MFPDKISLSIADL 447
KISLSI +L
Sbjct: 616 EENQKISLSIKEL 628
>gi|428307313|ref|YP_007144138.1| RNA binding S1 domain-containing protein [Crinalium epipsammum PCC
9333]
gi|428248848|gb|AFZ14628.1| RNA binding S1 domain protein [Crinalium epipsammum PCC 9333]
Length = 300
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K AW + +++ + ++V+ + N GG+ +G+R F+P++ L+ R
Sbjct: 96 GQVTLSRRQLQIKHAWDSIAEMQDNKQSVQVRVSGVNKGGVTVDFQGVRGFIPRSHLIDR 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N L E VG+ + +N +T L+ S+REA + + G L+EG V + P
Sbjct: 156 EN----LPELVGQNLTTSFLEVNPETKKLVFSQREANRAASFSQLEVGQLVEGKVSSLKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G I + +GL+HI +S+ + S+ L G+ +K ++++ ++SLS L
Sbjct: 212 FG--IFVETEGTTGLIHIKQVSQKYIESLPSLFEIGQPIKAVIIELDEGKGRVSLSTRVL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENYPG 274
>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
Length = 441
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 55/302 (18%)
Query: 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMV 229
PKPGD V G VV +++ + V+VG G ++PL E+ DA
Sbjct: 53 PKPGDIVRGQVVRVSDDSIMVDVGYKSEG------IIPL--NELSHRPLRSAHDAG---- 100
Query: 230 RGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
+K D + + VL + G G +S RR ++AW
Sbjct: 101 ------LKVGDEVQV--------------VVLSVDTKG---EGGLRISKRRADEQLAWAE 137
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
V + + E IE + TE GGL+ + GLRAFLP +++ +L + VG+++ V+
Sbjct: 138 VERKFEAGEVIEAEVTEAVKGGLVVDL-GLRAFLPASQVDR--GYVADLSKFVGQKIRVK 194
Query: 350 ITRINEDTNDLILSEREA------------WATLNLREGTLLEGTVKKIYPYGAQIRIGD 397
I ++ +ILS ++ W+T+ EG +LEGTVK I +GA I +G
Sbjct: 195 IIELDPYKGRVILSRKQVLEAERTAARERFWSTVQ--EGDVLEGTVKSITDFGAFIDLGG 252
Query: 398 SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVS 456
+ GLLHIS MS R+ S +++EGER+KV V++ K+SL + + +P V
Sbjct: 253 VD--GLLHISEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLGLKQVLPDPWDSVE 310
Query: 457 DK 458
+K
Sbjct: 311 EK 312
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 272 GRPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
GR +LS +++ R A R Q + +E G + G+ L +E+
Sbjct: 203 GRVILSRKQVLEAERTAARERFWSTVQEGDVLEGTVKSITDFGAFIDLGGVDGLLHISEM 262
Query: 329 -LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEG 381
R+ + +++ + G R+ V++ R++ + + L ++ W ++ + EG ++EG
Sbjct: 263 SYGRIKHPSQVVSE-GERIKVKVLRLDREKGKVSLGLKQVLPDPWDSVEEKYPEGAIVEG 321
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KI 440
TV ++ +GA + + + GL+HIS M+ R+ + ++++ G+ VKV V+ + +I
Sbjct: 322 TVARLTTFGAFVEL-EPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQNRRI 380
Query: 441 SLSI 444
SLS+
Sbjct: 381 SLSL 384
>gi|342218637|ref|ZP_08711247.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
gi|341589507|gb|EGS32782.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
Length = 636
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 54/293 (18%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEV-LPLYDKEMDFLLCDLKKDAEEFMV 229
K GD V G V+S N++ V++G + KE+ +P +K DF+ + F V
Sbjct: 297 KKGDVVDGTVISVNDDAAFVSIGTKAEAILPKKEMAVPAPEKASDFVAV-----GDTFKV 351
Query: 230 RGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
I K++ AI ++S ++ ++ W
Sbjct: 352 VIASAI-KEESAI--------------------------------VVSLVKMQKEADWEE 378
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
VRQ N+ +E E N GL+ I+ LR F+P ++ ++ L+ VG+ Q
Sbjct: 379 VRQAYDANQVVECVGKETNKAGLVVSIKTLRGFIPLSQ--GDIHFVKTLEHLVGKTFEAQ 436
Query: 350 ITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIGDSN 399
I ++E N L+LS + + E T ++GTV KI PYGA + +G
Sbjct: 437 IIDLDEHKNRLVLSRKAVLEAEREEKREKALATIAENTEVDGTVVKIMPYGAFVDLG--G 494
Query: 400 RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
GLLHIS++S R+ +V D+L+ G+ V LV + ++ISLSI L+ P
Sbjct: 495 VEGLLHISDISWKRINTVEDVLSVGDTVHALVQQFDRERNRISLSIKALQKNP 547
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ERE 366
G + G+ L +++ + N E VG ++ + + + + N + LS ++
Sbjct: 487 GAFVDLGGVEGLLHISDISWKRINTVEDVLSVGDTVHALVQQFDRERNRISLSIKALQKN 546
Query: 367 AW--ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
W A G ++EG V KI GA + I D GLLHIS ++ R +V D++ G
Sbjct: 547 PWIEAIEKFAVGDVVEGKVIKILNIGAILAI-DPEIQGLLHISELTPQRGVAVKDIVQIG 605
Query: 425 ERVKVLVVKSMFPDKISLSIADL 447
+ +KV ++K + PDK +S++ L
Sbjct: 606 DTMKVKIIK-IDPDKHKVSLSAL 627
>gi|414873909|tpg|DAA52466.1| TPA: hypothetical protein ZEAMMB73_351223, partial [Zea mays]
Length = 263
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 17/206 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S PL R W R K + N+GGL+ R L+ F+P LLS
Sbjct: 57 SAAPLDEVRLPQFAADWESARACKDQGRIFSLPVLRANSGGLIVRFNSLQGFVPN-PLLS 115
Query: 331 RVNNFTE--------LKEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREGTLL 379
+ + K+ VG + V++ +NE+ L+ SE++A W+T + ++ G +
Sbjct: 116 PAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGDIY 175
Query: 380 EGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
+G V ++ YGA + + G + +GL+HIS +S V V D LNEG+ VKV+VV
Sbjct: 176 DGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVNID 235
Query: 435 MFPDKISLSIADLESEPGLFVSDKEV 460
M +I+LSI LE +P L DK +
Sbjct: 236 MTKSRIALSIRQLEEDPLLETLDKVI 261
>gi|242032271|ref|XP_002463530.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
gi|241917384|gb|EER90528.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
Length = 366
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE--------L 338
W R K + + N+GGL+ R L+ F+P LLS + +
Sbjct: 73 WEAARTYKDQGNILTLPVLRANSGGLIVRFNSLQGFVPNP-LLSPAHWCEDPKRPIQDIT 131
Query: 339 KEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREGTLLEGTVKKIYPYGAQIRI 395
K+ VG + V++ +NE+ L+ SE++A W+T + ++ G + +G V ++PYGA + +
Sbjct: 132 KDLVGTSISVKVAEVNEEERKLVFSEKDASWSTYSSLIKIGDIYDGIVGSVFPYGAFVHL 191
Query: 396 ----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
G + +GL+HIS +S V V D LNEG+ VKV+VV +I+LSI LE +
Sbjct: 192 RFPDGLYHLTGLVHISEVSWDLVQDVQDFLNEGDAVKVIVVNIDTAKSRIALSIRQLEED 251
Query: 451 PGLFVSDKEVHI 462
P L DK + +
Sbjct: 252 PLLETLDKVIPL 263
>gi|347532511|ref|YP_004839274.1| RNA binding S1 domain containing protein [Roseburia hominis A2-183]
gi|345502659|gb|AEN97342.1| RNA binding S1 domain protein [Roseburia hominis A2-183]
Length = 300
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 14/190 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS R + AW +++++ + + V+ E G++ +EG+RAF+P +++ S
Sbjct: 82 AGNILLSRREANEEQAWEKLKEMMEEGTTVTVRIKESVKAGVVAYLEGIRAFIPASQITS 141
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
TE VG+ + V++ ++E+ L+LS + + GT+LE
Sbjct: 142 AYVEDTE--SWVGKEIPVRVITVDEEREKLVLSGKAVALEAEAEERNHKISMIVPGTVLE 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+ + PYGA I +G+ SGL+HIS + R+ S++L GE+VK V+ + +KI
Sbjct: 200 GTVESLMPYGAFIDLGN-GLSGLVHISQICERRIGKPSEVLKVGEKVKAKVLNT-NDNKI 257
Query: 441 SLSIADLESE 450
SLS+ L E
Sbjct: 258 SLSMKALAEE 267
>gi|335047279|ref|ZP_08540300.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333761087|gb|EGL38642.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 462
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 108/194 (55%), Gaps = 21/194 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL-S 330
G +LSTRR+ W + + E +E + + GGLL ++G+ AF+P + + S
Sbjct: 150 GNVVLSTRRVESLKDWQNLVEKFNNKELVEAEVVKEVKGGLLATVDGINAFIPASHITTS 209
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE------------AWATLNLREGTL 378
V +FT +G+++ I ++E ++LS RE AW+ L + G +
Sbjct: 210 FVKDFTTY---IGQKLECAIINLDERKKKVVLSRREVEEKELNEKLDLAWSKLAV--GDV 264
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
L GT++K+ +GA + +GD + GL+H+S++S R+ SD+LN G++V+V+++K +
Sbjct: 265 LTGTIRKLTDFGAFVNLGDVD--GLIHVSDISWNRIKKPSDILNVGDQVEVVILKLNRER 322
Query: 438 DKISLSIADLESEP 451
++ISL + L +P
Sbjct: 323 NRISLGLKQLTKKP 336
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLT----RIE 317
F +G+ L + R + + R + K+LNE +++ +++ G +LT ++
Sbjct: 214 FTTYIGQKLECAIINLDERKKKVVLSRREVEEKELNEKLDLAWSKLAVGDVLTGTIRKLT 273
Query: 318 GLRAFLPKAEL--LSRVNNFTELKEK-------VGRRMYVQITRINEDTNDLILSEREAW 368
AF+ ++ L V++ + + K VG ++ V I ++N + N + L ++
Sbjct: 274 DFGAFVNLGDVDGLIHVSDISWNRIKKPSDILNVGDQVEVVILKLNRERNRISLGLKQLT 333
Query: 369 AT------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
N G ++ GTV + +GA +++ + N GL+HIS +S + SD+LN
Sbjct: 334 KKPFELFLENNSVGDVVTGTVINLVDFGAFVKLKE-NVEGLVHISQISHDHIEKASDVLN 392
Query: 423 EGERVKVLVVK-SMFPDKISLSIADL 447
+ V+V ++ KISLSI +L
Sbjct: 393 IDDEVQVKIINIDEENQKISLSIKEL 418
>gi|358065808|ref|ZP_09152342.1| hypothetical protein HMPREF9473_04405 [Clostridium hathewayi
WAL-18680]
gi|356695671|gb|EHI57296.1| hypothetical protein HMPREF9473_04405 [Clostridium hathewayi
WAL-18680]
Length = 285
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 16/173 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRR 345
W +RQ+ I+VK E GG + ++ ++AF+P ++L LS V N E VG+
Sbjct: 85 WQELRQMLDEKTIIKVKVKEIVKGGAIAYVDEMKAFIPASQLSLSYVENLEEF---VGQY 141
Query: 346 MYVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIRI 395
+ V++ + + L+LS R+ + A + + G ++EGTV I PYGA + +
Sbjct: 142 LEVRVITTDPEAKRLVLSARDILKERQEAEKSKALESYKAGDIVEGTVDSIKPYGAFVNL 201
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
D SGLLHIS +S R+ S +L EG+++KV V+ S+ KISLS+ LE
Sbjct: 202 -DGGVSGLLHISQISTQRIKHPSVVLKEGQKIKVKVL-SVADGKISLSMRVLE 252
>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
Length = 405
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 15/191 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEGVRGFVPASMIENR 147
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLREGTLLEG 381
+L + G+ + +I IN + LILS R+ A A + L G ++EG
Sbjct: 148 F--VQDLNQYKGQTIRAKIIEINAADSRLILSRRDVLNEERSAALARIFDELSVGDVIEG 205
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
V ++ +GA I +G + GL+H+S +S RV+ SD+L+ GE VKV V+ + P++
Sbjct: 206 KVARMTNFGAFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVL-GLDPERER 262
Query: 442 LSIADLESEPG 452
+S++ ++PG
Sbjct: 263 ISLSIKATQPG 273
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + R A R+ + + IE K G + G+ + +E+
Sbjct: 173 RLILSRRDVLNEERSAALARIFDELSVGDVIEGKVARMTNFGAFIDLGGVDGLVHVSEIS 232
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGT 382
RV+ +++ VG + V++ ++ + + LS + W A GT+LEGT
Sbjct: 233 HERVSQPSDVL-SVGEEVKVKVLGLDPERERISLSIKATQPGPWDAAAEKAPAGTVLEGT 291
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
VK++ +GA + + GL+H+S +S + + SD+L G++V+V V+ + P+ ++
Sbjct: 292 VKRVVDFGAFVEVF-PGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVL-DVNPERQRL 349
Query: 441 SLSIADLESEPG 452
SLSI LE P
Sbjct: 350 SLSIKALEEAPA 361
>gi|291534309|emb|CBL07421.1| Ribosomal protein S1 [Roseburia intestinalis M50/1]
Length = 303
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 106/190 (55%), Gaps = 14/190 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS + +AW +++Q+ + ++V+ E G++T +EG+RAF+P +++
Sbjct: 82 AGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAFIPASQI-- 139
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
++ + +G+ + V++ ++ + L+LS + + GT+LE
Sbjct: 140 TLDYVEDTDAWIGKEIEVRVITVDPEKEKLVLSGKAVAREAEAEERSHKISMIIPGTVLE 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+ + PYGA I +G+ SGL+HIS + R+ S++L EG++VK V+ + +KI
Sbjct: 200 GTVETLMPYGAFINLGNG-LSGLVHISQICERRIKKPSEVLKEGQKVKAKVLNTN-DNKI 257
Query: 441 SLSIADLESE 450
SLS+ LE E
Sbjct: 258 SLSMKALEEE 267
>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
Length = 410
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEGVRGFVPASMIENR 147
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-----EAWATL-----NLREGTLLEG 381
+L + G+ + +I IN + LILS R E A L L G ++EG
Sbjct: 148 F--VQDLNQYKGQTIRAKIIEINAADSRLILSRRDVLNEERSAALARVFNELSVGDVVEG 205
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
V ++ +GA I +G + GL+H+S +S RV+ SD+L+ GE VKV V+ + P+K
Sbjct: 206 KVARMTNFGAFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEDVKVKVL-GLDPEKER 262
Query: 442 LSIADLESEPG 452
+S++ ++PG
Sbjct: 263 ISLSIKATQPG 273
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + R A RV + + +E K G + G+ + +E+
Sbjct: 173 RLILSRRDVLNEERSAALARVFNELSVGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEIS 232
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGT 382
RV+ +++ VG + V++ ++ + + LS + W A EGT+LEGT
Sbjct: 233 HERVSQPSDVL-SVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAPEGTVLEGT 291
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--I 440
VK++ +GA + + GL+H+S +S + + SD+L G++VKV V++ + PDK +
Sbjct: 292 VKRVVDFGAFVEVF-PGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLE-VNPDKQRL 349
Query: 441 SLSIADLESEP 451
SLSI LE P
Sbjct: 350 SLSIKALEEAP 360
>gi|340354820|ref|ZP_08677518.1| 30S ribosomal protein S1 [Sporosarcina newyorkensis 2681]
gi|339623072|gb|EGQ27581.1| 30S ribosomal protein S1 [Sporosarcina newyorkensis 2681]
Length = 406
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 143/307 (46%), Gaps = 60/307 (19%)
Query: 166 EYYEPKPGDFVIGVVVSGNENKLDVNV-GADLLGTMLTKEVLPLYDKEMDFLLCDLKKDA 224
E E + GD V G+V E + V + GA G V+P+ E+ L + DA
Sbjct: 33 EVKEYREGDHVTGIVTKVEEKSVTVEIAGAPFDG------VIPI--SELSSLHIEKAADA 84
Query: 225 EEFMVRGKMGIVK-DDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFR 283
E K+ I K +DDA +LS R++
Sbjct: 85 VEVGDELKLAITKVEDDAY--------------------------------VLSKRQVDA 112
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKV 342
+ AW +++ + E IE + + GGL+ + G+R F+P + + V +F + K
Sbjct: 113 ENAWDSLKEQFENGEIIETEVKDVVKGGLVVDL-GVRGFIPASLVEDHFVESFEDYK--- 168
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLEGTVKKIYPYGAQ 392
GR M +I ++++ N LILS R N ++EG +L+GTV++I +GA
Sbjct: 169 GRTMTFKIVEMDQEKNRLILSHRAVVQEQNDKKKEEALSSIQEGDVLDGTVQRIASFGAF 228
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+ IG + GL+HIS +S + SVSD+L EG+ +KV V+ +++SLSI D P
Sbjct: 229 VDIGGVD--GLVHISQISHGHIESVSDVLKEGDEIKVRVLSVDRDAERVSLSIKDTLPGP 286
Query: 452 GLFVSDK 458
V++K
Sbjct: 287 WENVAEK 293
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG----GLLTRIE 317
F + GRT++ + + + R + HR +Q ++ E + G G + RI
Sbjct: 164 FEDYKGRTMTFKIVEMDQEKNRLILSHRAVVQEQNDKKKEEALSSIQEGDVLDGTVQRIA 223
Query: 318 GLRAF--LPKAELLSRVNNFTE---------LKEKVGRRMYVQITRINEDTNDLILSERE 366
AF + + L ++ + LKE G + V++ ++ D + LS ++
Sbjct: 224 SFGAFVDIGGVDGLVHISQISHGHIESVSDVLKE--GDEIKVRVLSVDRDAERVSLSIKD 281
Query: 367 A----WATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
W + + G++LEGTVK++ YGA + I GL+HIS ++ T + + ++
Sbjct: 282 TLPGPWENVAEKAPIGSVLEGTVKRLVAYGAFVEIF-PGVEGLVHISRIAHTHIGTPHEV 340
Query: 421 LNEGERVKVLVVKSMFPD--KISLSIADL 447
L EG+ V+V V+ + P+ +ISLSI DL
Sbjct: 341 LEEGQTVQVKVL-DVNPEEKRISLSIKDL 368
>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
Length = 410
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 15/191 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + AW + +++ +E T+ GGL+ +EG+R F+P + + +R
Sbjct: 88 GSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEGVRGFVPASMIENR 147
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+L + G+ + +I IN + LILS R EA + + L G ++EG
Sbjct: 148 F--VQDLNQYKGQTIRAKIIEINAADSRLILSRRDVLNEERSEALSRVFNELSVGDVVEG 205
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
V ++ +GA I +G + GL+H+S +S RV+ SD+L+ GE VKV V+ + P+K
Sbjct: 206 KVARMTNFGAFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVL-GLDPEKER 262
Query: 442 LSIADLESEPG 452
+S++ ++PG
Sbjct: 263 ISLSIKATQPG 273
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + R A RV + + +E K G + G+ + +E+
Sbjct: 173 RLILSRRDVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEIS 232
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGT 382
RV+ +++ VG + V++ ++ + + LS + W EGT+LEGT
Sbjct: 233 HERVSQPSDVL-SVGEEVKVKVLGLDPEKERISLSIKATQPGPWEAAAAEAPEGTVLEGT 291
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--I 440
VK++ +GA + + GL+H+S +S + + SD+L G++VKV V++ + PDK +
Sbjct: 292 VKRVVDFGAFVEVF-PGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLE-VNPDKQRL 349
Query: 441 SLSIADLESEP 451
SLSI LE P
Sbjct: 350 SLSIKALEEAP 360
>gi|224099083|ref|XP_002311368.1| predicted protein [Populus trichocarpa]
gi|118485696|gb|ABK94698.1| unknown [Populus trichocarpa]
gi|222851188|gb|EEE88735.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P S++++
Sbjct: 163 ILSLRSIHYELAWERCRQLQAEDVIVKGKVVGGNKGGLVAVVEGLRGFVP----FSQISS 218
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + ++ ++E+ + LILS R+A A L G+++ GTV+ + PYGA
Sbjct: 219 KSTPEELLDKEFPLKFVDVDEEQSRLILSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 278
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 279 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 336
Query: 452 G 452
G
Sbjct: 337 G 337
>gi|443319276|ref|ZP_21048510.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442781103|gb|ELR91209.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 291
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR LLS RRL + W ++ Q + I + T N GG++ +EGLR F+P+ S
Sbjct: 84 GRVLLSIRRLLVQQLWEKLTQQQSDGILISTRVTGINKGGVIVDVEGLRGFVPR----SH 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLNLREGTLLEGTVKKIYP 388
+++ +L+ VG + V ++ + N L+LS + A A L G L+ GTV + P
Sbjct: 140 LSHPEDLEALVGTTLTVGFLEVDPERNKLVLSAKIAARSQAMGQLEVGQLVTGTVVSLKP 199
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA + +GLLH++ +S+ V S+ ++L + +K +VV ++ISLS L
Sbjct: 200 YGAFVEF--EGVTGLLHVNQISKNYVDSLPNVLKLDQPLKAIVVALDAERNRISLSTKVL 257
Query: 448 ESEPGLFVSDKEV 460
E PG + + +V
Sbjct: 258 EKYPGEMIKEPDV 270
>gi|401404074|ref|XP_003881642.1| putative 30S ribosomal protein S1 [Neospora caninum Liverpool]
gi|325116055|emb|CBZ51609.1| putative 30S ribosomal protein S1 [Neospora caninum Liverpool]
Length = 1526
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 258 GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
G +F EV+ + +LS + L R AW ++ +++ ++P+ + GG++ R+
Sbjct: 1150 GDEVFCEVI-KVGDAELILSLQTLRRIAAWEQLLALQREDQPLTATVLHAHKGGVVVRVL 1208
Query: 318 GLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE-- 375
GLR FLP ++L + V +L VG ++ V + + + + L++S R +++RE
Sbjct: 1209 GLRGFLPASQLPTSVKPGPQL---VGAQLRVALLQADVEKQRLLVSSR----IVHIREQM 1261
Query: 376 -----GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVL 430
++EG V I+P+G ++ G+ GLLH+S +S RV + D+L G RV+ L
Sbjct: 1262 RRVKPDQVVEGEVVSIHPFGVMVQFGECR--GLLHVSEVSAARVERLEDVLPLGSRVRAL 1319
Query: 431 VVKSMFP-DKISLSIADLESEPGLFVSDKEVHIIFLFILLFNKQYSV 476
V+ P KI+L+ LE PG V D + +F + + Y+V
Sbjct: 1320 VLHYDKPTGKIALTTKLLERYPGEMVRDSQA--VFDAAMDTAEMYAV 1364
>gi|229828596|ref|ZP_04454665.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
14600]
gi|229793190|gb|EEP29304.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
14600]
Length = 294
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 36/267 (13%)
Query: 197 LGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVE 256
+G ++ EVL + D E+ DL GK+GI+ +D ++ G P + +
Sbjct: 7 VGDIVNCEVLGVSDHEVS---VDLNA--------GKIGIIAFED-LSEEEGYDPHKHL-R 53
Query: 257 TGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
G L A++ GR G LS AW +++ NE + V E GG+
Sbjct: 54 NGKHLTAQITSLDDGR---GNIRLSVNAARHTDAWDQLKDAHSANETLTVHVREQVKGGV 110
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------ 365
+ ++GLRAF+P ++L S V+N + VGR + V+I I L+LS R
Sbjct: 111 VAYLKGLRAFIPASQLAASYVDNLADF---VGRDLEVKIDSIEPAKRRLVLSARAVEQEK 167
Query: 366 ---EAWATLNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
E A L+ E G+++EGTV ++ +GA + I D GL+HIS +S RV V D L
Sbjct: 168 KRLEQQAKLDALEVGSIVEGTVARLKDFGAFVNIAD-GLDGLVHISQISLKRVEKVEDAL 226
Query: 422 NEGERVKVLVVKSMFPDKISLSIADLE 448
G++V+V + M K+SLS+ +E
Sbjct: 227 RVGQKVRVKIT-GMKDGKVSLSMKAVE 252
>gi|194689506|gb|ACF78837.1| unknown [Zea mays]
gi|194706906|gb|ACF87537.1| unknown [Zea mays]
gi|219887451|gb|ACL54100.1| unknown [Zea mays]
gi|414873910|tpg|DAA52467.1| TPA: RNA binding S1 [Zea mays]
Length = 366
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 17/206 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S PL R W R K + N+GGL+ R L+ F+P LLS
Sbjct: 57 SAAPLDEVRLPQFAADWESARACKDQGRIFSLPVLRANSGGLIVRFNSLQGFVPNP-LLS 115
Query: 331 RVNNFTE--------LKEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREGTLL 379
+ + K+ VG + V++ +NE+ L+ SE++A W+T + ++ G +
Sbjct: 116 PAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGDIY 175
Query: 380 EGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
+G V ++ YGA + + G + +GL+HIS +S V V D LNEG+ VKV+VV
Sbjct: 176 DGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVNID 235
Query: 435 MFPDKISLSIADLESEPGLFVSDKEV 460
M +I+LSI LE +P L DK +
Sbjct: 236 MTKSRIALSIRQLEEDPLLETLDKVI 261
>gi|427701380|ref|YP_007044602.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427344548|gb|AFY27261.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 395
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 12/190 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +VRQ+++ + ++V+ +N GG+ +EGLR F+P+++L N
Sbjct: 189 ISARALALRQSWEKVRQLEKEGKVVQVRVNGFNRGGVTCDLEGLRGFIPRSQL----NEG 244
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYPYGAQ 392
+ VG+ + V +N +T L+LSE+ A L G L+EG V I PYG
Sbjct: 245 ENHEALVGQTLGVAFLEVNAETRKLVLSEKRAATAARFATLEVGQLVEGQVVSIKPYGFF 304
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESE 450
+ +G SGLLH S+++ + + + +GE +K L+ ++ P +I+L+ A LE
Sbjct: 305 VDLG--GVSGLLHQSSITGGALRDLREAFQQGEHLKALIT-AVDPARGRIALNTALLEGP 361
Query: 451 PGLFVSDKEV 460
PG + K+
Sbjct: 362 PGELLIAKDT 371
>gi|226509759|ref|NP_001151317.1| RNA binding S1 [Zea mays]
gi|195645792|gb|ACG42364.1| RNA binding S1 [Zea mays]
Length = 366
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 17/206 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S PL R W R K + N+GGL+ R L+ F+P LLS
Sbjct: 57 SAAPLDEVRLPQFAADWESARACKDQGRIFTLPVLRANSGGLIVRFNSLQGFVPNP-LLS 115
Query: 331 RVNNFTE--------LKEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREGTLL 379
+ + K+ VG + V++ +NE+ L+ SE++A W+T + ++ G +
Sbjct: 116 PAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGDIY 175
Query: 380 EGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
+G V ++ YGA + + G + +GL+HIS +S V V D LNEG+ VKV+VV
Sbjct: 176 DGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVNID 235
Query: 435 MFPDKISLSIADLESEPGLFVSDKEV 460
M +I+LSI LE +P L DK +
Sbjct: 236 MTKSRIALSIRQLEEDPLLETLDKVI 261
>gi|224035425|gb|ACN36788.1| unknown [Zea mays]
gi|414873911|tpg|DAA52468.1| TPA: hypothetical protein ZEAMMB73_351223 [Zea mays]
Length = 370
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 19/209 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP------ 324
S PL R W R K + N+GGL+ R L+ F+P
Sbjct: 57 SAAPLDEVRLPQFAADWESARACKDQGRIFSLPVLRANSGGLIVRFNSLQGFVPNPLLSP 116
Query: 325 ----KAELLSRVNNFTEL-KEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREG 376
KA+L ++ K+ VG + V++ +NE+ L+ SE++A W+T + ++ G
Sbjct: 117 AHWCKAKLADPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIG 176
Query: 377 TLLEGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
+ +G V ++ YGA + + G + +GL+HIS +S V V D LNEG+ VKV+VV
Sbjct: 177 DIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVV 236
Query: 433 K-SMFPDKISLSIADLESEPGLFVSDKEV 460
M +I+LSI LE +P L DK +
Sbjct: 237 NIDMTKSRIALSIRQLEEDPLLETLDKVI 265
>gi|125987739|sp|Q1XDE2.2|RR1_PORYE RecName: Full=30S ribosomal protein S1, chloroplastic
Length = 263
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + + V +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHL-- 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
NF + ++ + + +++ + E +N+LILS R A A+ NL G ++EG + +I
Sbjct: 146 --GNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQIT 203
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
PYG I++G N GL+HIS ++ + +S G+ +K +++
Sbjct: 204 PYGLFIKVG--NLKGLVHISEINIKNLEQISSQFKIGDTIKAVII 246
>gi|357114737|ref|XP_003559151.1| PREDICTED: 30S ribosomal protein S1-like [Brachypodium distachyon]
Length = 354
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTE--------L 338
W VR K + + NTGGL+ R L+ F+P LLS + +
Sbjct: 59 WEAVRADKDRGRVLRLPVVRANTGGLILRYNSLQGFVPNP-LLSPAHWCKDPKRPIQDIT 117
Query: 339 KEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREGTLLEGTVKKIYPYGAQIRI 395
K+ VG + V+++ +NE+ L+ SE++A W+ + ++ G +G V ++ YGA + +
Sbjct: 118 KDLVGSSISVKVSEVNEEEKKLVFSEKDASWSAYSSQVKIGDTYDGIVGSVFHYGAFVHL 177
Query: 396 ----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
G+ + +GL+HIS +S V V D LNEG+ VKV+VVK +I+LSI LE +
Sbjct: 178 RFPDGNYHLTGLVHISEVSWDLVQDVQDFLNEGDTVKVVVVKIDAEKSRIALSIRQLEED 237
Query: 451 PGLFVSDK 458
P L DK
Sbjct: 238 PLLETLDK 245
>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
Length = 411
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 146/302 (48%), Gaps = 59/302 (19%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
K GD V G V+ +N+ V++G G V+PL +E+ + D DA +
Sbjct: 36 KKGDIVKGTVIKIEDNQAYVSLGYKYDG------VIPL--RELSAVQLDNAADAVQVGQE 87
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
++ ++ DD R +LS R++ AW R+
Sbjct: 88 LELKVISIDDD-----------------------------KERLVLSKRQVDAGKAWDRL 118
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--VNNFTELKEKVGRRMYV 348
++ + E +EV + GGL+ + G+R F+P A ++ R V +F+ K G+ + V
Sbjct: 119 QEQFEKGEVLEVTVADVVKGGLVVDV-GVRGFIP-ASMVERHYVEDFSSYK---GQTLRV 173
Query: 349 QITRINEDTNDLILSEREAWA----------TLNLREGTLLEGTVKKIYPYGAQIRIGDS 398
+I ++ +TN +ILS +E +L G ++EGTV+++ P+GA + IG
Sbjct: 174 KIKELDRETNKVILSAKEVLEEEYEANKRRIMESLEPGQIIEGTVQRLTPFGAFVDIGGI 233
Query: 399 NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPGLFVS 456
+ GL+H+S ++ V D+++EG++VKV V+K + P+ KISLSI + P +
Sbjct: 234 D--GLVHVSELAWEHVAHPRDVVSEGQQVKVKVLK-VDPEAGKISLSIKAAQPGPWELAA 290
Query: 457 DK 458
DK
Sbjct: 291 DK 292
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ +++ + + LS + A W A G ++ GTVK+I +GA + +
Sbjct: 257 GQQVKVKVLKVDPEAGKISLSIKAAQPGPWELAADKFHNGDIVTGTVKRIVSFGAFVEVA 316
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEP 451
GL+HIS ++ + + ++L EG+ VK V+ +K ISLSI + E P
Sbjct: 317 -PGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVLDFNPAEKRISLSIKETEEAP 371
>gi|428213063|ref|YP_007086207.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001444|gb|AFY82287.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 336
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R++ + W + Q+++ NE + V+ N GG+ +EGLR F+P++ L R
Sbjct: 128 GQVKVSIRQMELRKVWEHLAQVQENNESVPVRVIGVNKGGVTVNVEGLRGFIPRSHLSER 187
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYP 388
N L++ +G+ + I + D N L+LS+R A L G L+EG V + P
Sbjct: 188 GN----LEQLIGQNLSATILEADRDRNKLVLSQRLQARAKRMGQLVVGQLVEGEVVGLKP 243
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + +GLLHI+ +S+ V S+ + G+ +KV++ + + +ISL+ L
Sbjct: 244 FGVFVDL--NGVTGLLHINQISQKYVASLQTVFQVGQPIKVVIAELDEWKGRISLTTKVL 301
Query: 448 ESEPG 452
E+ PG
Sbjct: 302 ENYPG 306
>gi|414076582|ref|YP_006995900.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413969998|gb|AFW94087.1| ribosomal protein S1 [Anabaena sp. 90]
Length = 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 30/269 (11%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +VRGK+ V D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQVVRGKIFQVDHDGAYVDIGGKSSAFLPQEEASLRAVTDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
+L F + + G+ +S ++L + W ++ +I++ ++ ++V+ T N GG+
Sbjct: 77 ILPMDEELEFLIIRDQDAEGQVTISRKQLEMRQIWEKLAEIQENSQTVQVRVTGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
+ GLR F+P++ L R +N LK G+ + V IN +TN L+LS+R A + N
Sbjct: 137 TVDLFGLRGFIPRSHLSER-DNLDALK---GQSLTVGFLEINRETNKLVLSQRLAARSSN 192
Query: 373 ---LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
L G L+EG + I P+G + + + S LLHI +S+ + S+ + G+ +K
Sbjct: 193 FSLLEIGQLIEGKITGIKPFG--VFVDFNGVSALLHIKQVSQKFIESLDKVFQIGQPIKA 250
Query: 430 LVVK-SMFPDKISLSIADLESEPGLFVSD 457
+++ ++++S LE+ PG V +
Sbjct: 251 VIIDLDEGKGRVAISTRVLENHPGEVVEN 279
>gi|302391808|ref|YP_003827628.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
arabaticum DSM 5501]
gi|302203885|gb|ADL12563.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
arabaticum DSM 5501]
Length = 676
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS ++ ++ +W RV ++ + +E IE + T+ GGL+ + GLR F+P + +
Sbjct: 361 GNIVLSKKKQDQEKSWQRVEKVYENDEIIEAEITKEVKGGLVADV-GLRGFIPASHVA-- 417
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEG 381
+ +L + VG + ++I + D N+++LS +E +L EG ++EG
Sbjct: 418 IEYVEDLSQYVGETLQLKIIEVERDNNNVVLSRKEVLEEERAKKKEEIFASLEEGEVIEG 477
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--RVKVLVVKSMFPDK 439
V K+ +GA + IG GLLHIS MS R+ SD+L E + VKVL VK ++
Sbjct: 478 RVTKLVDFGAFVDIG--GVEGLLHISEMSWGRIDHPSDVLEEAQETEVKVLGVKPE-EER 534
Query: 440 ISLSIADLESEP 451
ISL + + +P
Sbjct: 535 ISLGLKQILPDP 546
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
N EG ++ G + K +GA + I +S GL+HIS +S V + +++ G+ V+ +
Sbjct: 553 NYNEGEVISGKITKTVDFGAFMEI-ESGVEGLIHISQLSHRHVANTEEVVTAGDEVEAKI 611
Query: 432 VKSMFPD--KISLSIADLESEPGLFVSDK 458
+ ++ PD K+ LS+ +LE + DK
Sbjct: 612 I-NIEPDERKVGLSLKELEDKEEQKSQDK 639
>gi|300869072|ref|ZP_07113673.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300332929|emb|CBN58869.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 318
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 10/181 (5%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS R L R++AW RVRQ++ N + N GG +IEGLR F+P + + +
Sbjct: 112 LSIRELERRIAWERVRQMQAENVTVYATVYAMNPGGASVKIEGLRGFIPSSHICTD---- 167
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIYPYGAQ 392
++ +G + ++ ++E+ + L LS R A L+ G ++ G ++ + PYGA
Sbjct: 168 KPKEDLIGEELPLKFLEVDEECDRLSLSHRSALLEPMIKKLKVGDVVVGKIRGLKPYGAW 227
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+ IGD LLHIS +S + + + VKV+++ +IS+S LE EP
Sbjct: 228 VNIGDV--PALLHISEISHVPFDASDSVFKVNDEVKVMILDVDTVRGRISVSTKQLEPEP 285
Query: 452 G 452
G
Sbjct: 286 G 286
>gi|385799694|ref|YP_005836098.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
praevalens DSM 2228]
gi|309389058|gb|ADO76938.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
praevalens DSM 2228]
Length = 721
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS ++ + AW ++ + E IE + T+ GGL+ + G+R F+P + +
Sbjct: 400 GNMVLSKKQAEYEKAWEKIEEAYNNEEIIEAEVTKEVKGGLVVDV-GVRGFIPASHVA-- 456
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWA----TL-NLREGTLLEG 381
+ +LK+ VG + +++ + D N+++LS E+E A TL +L EG +EG
Sbjct: 457 IGYVDDLKDYVGESLRLKVIEVERDNNNVVLSHKKVLEKERAAKKEETLASLEEGQTVEG 516
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
TV K+ +GA I +G GLLHIS MS R+ S +++L EGE+V+V V+ + ++I
Sbjct: 517 TVTKLVDFGAFIDLG--GIEGLLHISEMSWGRIESPAEVLTEGEKVEVKVLGVNKEEERI 574
Query: 441 SLSIADLESEP 451
SL + L ++P
Sbjct: 575 SLGLKQLLADP 585
>gi|255556496|ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
gi|223541597|gb|EEF43146.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
Length = 412
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEG-LRAFLPKAELLSRVN 333
+LS R + ++W R RQ++ + ++ K N GG++ +EG LR F+P S+++
Sbjct: 163 ILSLRAIQYDLSWERCRQLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVP----FSQIS 218
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGA 391
+ + +E + + + ++ ++E+ + L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 219 SKSTAEELLEKELPLKFVDVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGA 278
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE
Sbjct: 279 FIDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 336
Query: 451 PG 452
PG
Sbjct: 337 PG 338
>gi|343521385|ref|ZP_08758353.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343396591|gb|EGV09128.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 464
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 108/194 (55%), Gaps = 21/194 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LSTRR+ W + + E +E + + GGLL ++G+ AF+P + + S
Sbjct: 150 GNVVLSTRRVESLKDWQNLVEKFNNKELVEAEVVKEVKGGLLATVDGINAFIPASHITTS 209
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE------------AWATLNLREGTL 378
V +FT +G+++ I I+E ++LS RE AW+ L++ + +
Sbjct: 210 FVKDFTPY---IGKKLECAIINIDERKKKVVLSRREVEEKELQEKLDLAWSKLSVDD--V 264
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
L GTV+K+ +GA + +GD + GL+H+S++S R+ SD+L+ G+ V+V+++K +
Sbjct: 265 LTGTVRKLTDFGAFVNLGDVD--GLIHVSDISWNRIKKPSDILSVGDEVEVVILKLNRER 322
Query: 438 DKISLSIADLESEP 451
++ISL + L +P
Sbjct: 323 NRISLGLKQLTKKP 336
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
G ++ GTV + +GA +++ + N GL+HIS +S + SD+LN G+ V+V ++
Sbjct: 347 GDVVTGTVINLVDFGAFVKLKE-NVEGLVHISQISHDHIEKASDVLNIGDEVEVKIINID 405
Query: 435 MFPDKISLSIADLESEP 451
KISLSI +L +P
Sbjct: 406 EENQKISLSIKELLEKP 422
>gi|443311120|ref|ZP_21040754.1| ribosomal protein S1 [Synechocystis sp. PCC 7509]
gi|442778868|gb|ELR89127.1| ribosomal protein S1 [Synechocystis sp. PCC 7509]
Length = 299
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 101/188 (53%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R+L + W R+ +++ ++ ++V+ T N GG+ ++G+R F+P++ LL R
Sbjct: 96 GQVTVSRRQLEVQQIWQRLTDMQENSQTLQVRVTGVNKGGVTVDVQGVRGFIPRSHLLER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+N LK G+ + ++ N L+LS R A + + + G L+EG + I P
Sbjct: 156 -DNLDSLK---GQTLSASFLEVDLSNNKLVLSNRLATRSASFSQLEIGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + SGLLHI +S+ + S++ L G+ +K +++ +ISLS L
Sbjct: 212 FGMFVDL--QGVSGLLHIKQISQKFIESLTTLFQPGQIIKAVIIDLDEAKGRISLSTRVL 269
Query: 448 ESEPGLFV 455
ES PG V
Sbjct: 270 ESYPGEMV 277
>gi|406899169|gb|EKD42518.1| hypothetical protein ACD_73C00126G0001 [uncultured bacterium]
Length = 525
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 109/200 (54%), Gaps = 17/200 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
SG +LS + +W RV+Q+ + IE GG+ + G++AFLP +++ L
Sbjct: 52 SGNIILSKEKADAMRSWDRVQQVYESGAVIEGVIVNKIKGGMSVNLGGIKAFLPASQIDL 111
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAWAT---LNLREGTLL 379
V + +L + + +I ++N+ +++LS ERE+ NLREG ++
Sbjct: 112 KPVKSLDKL---IATKCRFKILKLNQSKGNIVLSRRTVLEEERESLKKELLTNLREGQVV 168
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
GTVK I YGA + +G + GLLHI+++S RV ++ LN G+ ++V+V+K +
Sbjct: 169 AGTVKNITDYGAFVDLGGID--GLLHITDISWGRVNHPNEALNVGDELEVVVLKYEKESE 226
Query: 439 KISLSIADLESEPGLFVSDK 458
K+SL + L+ +P L V+ K
Sbjct: 227 KVSLGLKQLQPDPWLDVAKK 246
>gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa]
gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 107/181 (59%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + ++AW R RQ++ + ++ K N GG++ +EGL+ F+P S++++
Sbjct: 163 ILSLRSIQYELAWERCRQLQAEDAIVKGKVVGGNRGGVVAVVEGLQGFVP----FSQISS 218
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ + L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 219 KSSAEELLDKEVPLKFVDVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 278
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ +S +L G+ +KV+++ ++SLS LE P
Sbjct: 279 IDIGGIN--GLLHVSQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 336
Query: 452 G 452
G
Sbjct: 337 G 337
>gi|160878183|ref|YP_001557151.1| RNA-binding S1 domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160426849|gb|ABX40412.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
Length = 303
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 16/201 (7%)
Query: 255 VETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLT 314
V G + A +L G LLS ++ ++W +++ + VK + GG++T
Sbjct: 69 VTIGEEITAMILSEDKEGNLLLSKKKADDILSWDKLKTMMTERTVTTVKVSNAVNGGVVT 128
Query: 315 RIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE------- 366
+EG+RAF+P + L LS V + + VG+ + V + +++ N L+LS +E
Sbjct: 129 YLEGIRAFIPASMLSLSYVEDVSTF---VGKVLKVIVITADKEANKLVLSAKEVLREEEA 185
Query: 367 ---AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ +++G + G V K+ P+GA + IG+ SGL+HIS + R+ S +++L E
Sbjct: 186 KEKSHKISQVQKGIVTTGIVDKLMPFGAFVSIGE-GLSGLVHISQICGKRIKSPAEVLKE 244
Query: 424 GERVKVLVVKSMFPDKISLSI 444
G+ VKV V+ + KISLSI
Sbjct: 245 GQEVKVKVL-DVKDGKISLSI 264
>gi|390559271|ref|ZP_10243622.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
gi|390174148|emb|CCF82915.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
Length = 459
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 28/254 (11%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D LL D+ +E + + + D++ +S G VL V G
Sbjct: 61 DELLVDIGSKSEGVIPSREFSTLTDEERARLSVGD----------HVLVFVVQAENQEGH 110
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL---- 329
+LS R ++ +W +++ + + IE + T +N GGLL ++G+R F+P +++
Sbjct: 111 AVLSIDRARQEKSWRLLQEAFEGGDIIEAQVTNYNKGGLLVNLDGVRGFVPASQVTEIRG 170
Query: 330 -SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ ++ +G R+ ++I IN N LILSER+A L EG
Sbjct: 171 GDEGSKQADMSRLIGSRLPLKIIEINRHRNRLILSERQAVQEKRDVMKERLIEELHEGET 230
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
G V I +GA + IG ++ GL+H+S +S +RV +++L GE V V V+ +
Sbjct: 231 RRGRVTSICDFGAFVDIGGAD--GLVHLSELSWSRVKHPAEVLKVGEEVDVYVLGINANE 288
Query: 438 DKISLSIADLESEP 451
KI+LSI ++EP
Sbjct: 289 KKIALSIKRTQAEP 302
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G + +EL SRV + E+ KVG + V + IN + + LS +
Sbjct: 242 GAFVDIGGADGLVHLSELSWSRVKHPAEVL-KVGEEVDVYVLGINANEKKIALSIKRTQA 300
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E W+ + ++ G L+ GTV ++ +GA RI D GL+H+S +S R+ ++E
Sbjct: 301 EPWSQVAVKYEVGQLVRGTVTQLANFGAFARIEDGV-EGLIHVSELSEQRIAHPRQAVSE 359
Query: 424 GERVKVLVVK 433
G+ + + +++
Sbjct: 360 GQELILRIIR 369
>gi|170078958|ref|YP_001735596.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
gi|169886627|gb|ACB00341.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
Length = 296
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 253 PVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
PV E V F V G+ G+ LS R+L + W + Q + ++++ T N GG+
Sbjct: 75 PVGEN--VEFLIVRGQNAEGQVTLSRRKLAEQRVWEDLAQAAEAGNSVQMRVTGSNRGGV 132
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
I+GLR F+P + L+ + N +L +G+ + V +++ L+LS+R A
Sbjct: 133 TGDIQGLRGFIPNSHLVDK--NIDDL---MGQLLTVNFLEFDQERRKLVLSQRYAAQAEV 187
Query: 373 LRE---GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
+R G L+ GTV I PYG + + +GLLH S +S V + L + G+ V+V
Sbjct: 188 MRRLSIGALVSGTVVNIKPYGVFVEL--DGMTGLLHRSQISAKPVEQIEALFSIGQTVRV 245
Query: 430 LVVK-SMFPDKISLSIADLESEPG 452
L+ ++ISLS+ LE PG
Sbjct: 246 LITDIEESNNRISLSLQALEKFPG 269
>gi|321437419|gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
Length = 415
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R + +AW R RQ++ + ++ K N GG++ +EGLR F+P S+++
Sbjct: 167 ILSLRSIQYDLAWERCRQLQAEDVIVKGKVVGGNKGGVVAIVEGLRGFVP----FSQISA 222
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ + L+LS R+A A L G+++ GTV+ + PYGA
Sbjct: 223 KSTAEELIDKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAF 282
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
+ IG N GLLH+S +S RV+ +S +L G+ +KV+++ ++SLS LE P
Sbjct: 283 VDIGGIN--GLLHVSQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 340
Query: 452 G 452
G
Sbjct: 341 G 341
>gi|153811995|ref|ZP_01964663.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
gi|149831894|gb|EDM86980.1| S1 RNA binding domain protein [Ruminococcus obeum ATCC 29174]
Length = 301
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 100/183 (54%), Gaps = 14/183 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +AW +++++K+ E ++V G++ +EG+R F+P ++L
Sbjct: 84 GNILLSRVEAVDVLAWDKLKELKESGEVLDVVVKGITNAGVIAYVEGVRGFIPASKL--A 141
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEG 381
+N + +E + + + VQ+ +++++ LILS +E NL G + EG
Sbjct: 142 LNYVEDTEEYLNKPIQVQVLDVDKESKKLILSAKEILRAKAEEERKNKVSNLEIGLVTEG 201
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
TV+ + PYGA + +G+ SGL+HIS + R+ S++L G+ VKV V ++ K+S
Sbjct: 202 TVESLQPYGAFVNLGN-GLSGLVHISQICEKRIKKPSEVLAVGDTVKVKVT-AIKDGKLS 259
Query: 442 LSI 444
LSI
Sbjct: 260 LSI 262
>gi|291460402|ref|ZP_06599792.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon
078 str. F0262]
gi|291416969|gb|EFE90688.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon
078 str. F0262]
Length = 254
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W ++ + P+EV+ E G+ T +EG+RAF+P ++L +L VG+R+
Sbjct: 45 WEKILDDYENKIPVEVEIQEAVKSGVTTTLEGIRAFIPASKLSLSFVEEKDLPNWVGKRL 104
Query: 347 YVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V++ + N L+LS +E A L G++LEG V+ + YGA + IG
Sbjct: 105 TVRVVTAEPEGNRLVLSAKELLREEAEKLRAEKAAKLEVGSVLEGKVESLKDYGAFVDIG 164
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
D +GLLH+S +S+ R+ + +D+L EG+ V V + +M +ISLS+ +L
Sbjct: 165 D-GVTGLLHVSQISQRRIKTPADVLKEGQSVTVKIT-AMKDGRISLSMKEL 213
>gi|428319922|ref|YP_007117804.1| RNA binding S1 domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428243602|gb|AFZ09388.1| RNA binding S1 domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 299
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW + ++++ + ++V+ + N GG+ ++G+R F+P++ L+ R
Sbjct: 96 GQVTLSLRQLQIQQAWEDLIELQETGKVLQVRVSGANKGGVTVDVQGMRGFIPRSHLVDR 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIYP 388
N L+ +G+ + V ++ + L+LS+R A A +L+ G L+EG V I P
Sbjct: 156 DN----LESLIGQSLSVNFLEVDREREKLVLSQRMATQSNAFKDLQIGQLVEGKVSSIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + SGLLHI +S+ + ++ L G+ +K +VV +ISLS L
Sbjct: 212 FGVFVDL--EGVSGLLHIKQVSQKYIDNLGKLFAPGQPLKAIVVDLDESRGRISLSTRVL 269
Query: 448 ESEPGLFV 455
E+ PG V
Sbjct: 270 ENYPGEMV 277
>gi|260881013|ref|ZP_05403387.2| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
gi|260850179|gb|EEX70186.1| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
Length = 349
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
VV+ G V+ V+ +LS + R +AW + + K+ E ++ T+ GGL+
Sbjct: 61 VVKVGDVIDVYVVSLGGDNGGILSKVKADRMVAWTEMEKKKEAGETVQAHITQVVKGGLV 120
Query: 314 TRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-- 371
+EGLR F+P +++ ++ +L VG+ + +I I+ L+LS R
Sbjct: 121 ASVEGLRGFIPASQM--ELHFVKDLSIYVGQTVEAEIIEIDVHKQRLVLSRRSLLEAERA 178
Query: 372 --------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
L G + GTVK++ YGA I IG + GL HIS+++ RV SD+L
Sbjct: 179 KKEEEVFSTLEAGQTVRGTVKRLVDYGAFIDIGGVD--GLAHISDLAWHRVKHPSDVLEV 236
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESEP 451
G+ + V VKS+ P+ +ISLS+ D +P
Sbjct: 237 GQELDVY-VKSVDPENKRISLSVKDTMRDP 265
>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
Length = 402
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 28/254 (11%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGR 273
D +L D+ AE + +M + +D A+ GS +L V GR
Sbjct: 62 DEILVDIGAKAEGIVPSREMQSLPAEDRAALRIGS----------ELLVFVVQSEDKEGR 111
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--LSR 331
+LS + ++ +W ++ + + I + +N GGLL ++G+R F+P +++ +SR
Sbjct: 112 AILSVDKARQEKSWRMLQTAFERGDVITARVVNYNKGGLLVNLDGVRGFVPASQVNGISR 171
Query: 332 ---VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTL 378
+++ V + +++ IN + N LILSER+A L+EG +
Sbjct: 172 GPETQKQSDMARMVNTDLQLKVIEINRNRNRLILSERQAVQEARETKKDELLSRLKEGDV 231
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
GT+ + +GA + IG ++ GL+H+S +S +RV S++L+ G++V+V ++
Sbjct: 232 RTGTISSVCDFGAFVDIGGAD--GLVHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDR 289
Query: 439 K-ISLSIADLESEP 451
K I+LSI +SEP
Sbjct: 290 KRIALSIKRTQSEP 303
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTV 383
SRV + +E+ G ++ V I ++ D + LS + E W R G ++EGT+
Sbjct: 263 SRVKHPSEVLHP-GDKVQVSILSVDHDRKRIALSIKRTQSEPWTRAGERYQLGQIVEGTI 321
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433
++ +GA RI D GL+HIS M R+ +++ EG+ ++ +++
Sbjct: 322 TQLASFGAFARIEDGI-EGLIHISEMGDERIQHPKEVIAEGDTIQARIIR 370
>gi|86605910|ref|YP_474673.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86554452|gb|ABC99410.1| putative ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 304
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 24/244 (9%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETG-------TVLFAE-------VLGRTLSG 272
+VRG++ ++D A+ GG P P+ E G + LF +L G
Sbjct: 35 VVRGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRSGEDLSELFPLKSEADFLILREDSEG 94
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+ +LS RRL K W + + + + + N GG+L ++GLR F+P++ L R
Sbjct: 95 QIVLSARRLRLKRLWEELAEKQTNGQTVTALVIGTNKGGVLVDVQGLRGFIPRSHLNQRE 154
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNL---REGTLLEGTVKKIYPY 389
N L+E VG+ + + +N N L+LS+R A +L G ++ G V + P+
Sbjct: 155 N----LEELVGQSLTASLLEVNPAANKLVLSQRVARQAESLGIYTTGQVVRGKVSALKPF 210
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G + + + SGLL I +S++ V S+SDL G+ +K +V+ +++LS+ LE
Sbjct: 211 GVFVEL-EEGGSGLLPIKQVSQSFVASLSDLFQPGQPLKAVVIDVDEAKGRVALSLRVLE 269
Query: 449 SEPG 452
PG
Sbjct: 270 KYPG 273
>gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell
isolate TM7c]
Length = 358
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 126/278 (45%), Gaps = 49/278 (17%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET 257
G ++T +VL L E +L DL F+ R ++G ++ +S G VV+T
Sbjct: 25 GEVVTGKVLSLKKHE---VLIDLGAQGVGFVPRREVGFSRN-----ISEGDEVSASVVDT 76
Query: 258 GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
+G LLS R+ + W V + E I+++ + N GGLL E
Sbjct: 77 ----------ELENGMSLLSLRKAVKDRGWEEVSARLESGEVIDIQPYDANRGGLLVEYE 126
Query: 318 GLRAFLP----------------KAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLI 361
G+R FLP K E+L R+NN +G+ M V+I + +N LI
Sbjct: 127 GVRGFLPVSQLSAEHYPRVGSSDKDEILQRLNNL------IGKTMKVRILDADRKSNKLI 180
Query: 362 LSEREAWAT------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT 415
SE+EA L G +EG V + +G + + GL+HIS +S RV
Sbjct: 181 FSEKEAVKDGLAERFEKLAVGDQVEGVVTGVVDFGVFVNV--EGIEGLVHISEISWERVN 238
Query: 416 SVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGL 453
+ SD + G+ +K ++ ++ D++SLS+ L +P L
Sbjct: 239 NPSDYVKTGQTIKAKII-AIDKDRLSLSMKQLTQDPWL 275
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSE--REA 367
G+ +EG+ + +E+ RVNN ++ K G+ + +I I++D L + + ++
Sbjct: 215 GVFVNVEGIEGLVHISEISWERVNNPSDYV-KTGQTIKAKIIAIDKDRLSLSMKQLTQDP 273
Query: 368 WAT--LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
W T N +G +EGTV +I P+GA +++ + + L+HIS +
Sbjct: 274 WLTEVQNFSKGDKVEGTVTRITPFGAFVQVSPAIEA-LVHISEL 316
>gi|332711689|ref|ZP_08431620.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332349667|gb|EGJ29276.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332688375|gb|AEE88267.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 285
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 100/185 (54%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W + ++++ + ++V+ + N GG+ + GLR F+P++ LS+
Sbjct: 80 GQVTLSRRQLEIKQVWDGLVELQENGKSLDVRVSGVNKGGVTVDVRGLRGFIPRSH-LSQ 138
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+N L +G+++ V + D L+LS+REA E G L+EG V I P
Sbjct: 139 HDNLDSL---IGQKLTVNFLEADRDRKKLVLSQREAVRAATFSELEVGQLVEGKVAAIKP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + +N GLLHI +S++ V +S + G+ ++V+++ +IS+S L
Sbjct: 196 FGVFVDFNQTN--GLLHIKQVSQSFVEDLSKVFEIGQVIQVMIINLDEGKGRISMSTRVL 253
Query: 448 ESEPG 452
E+ PG
Sbjct: 254 ENYPG 258
>gi|121551159|gb|ABM55769.1| RpsA [Pasteuria ramosa]
Length = 392
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 18/198 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + K AW ++ + NE IE K ++ GGL+ + G+R F+P + + V
Sbjct: 79 ILSKRAVDAKKAWPFLQHKYENNENIEAKVSDVVKGGLVIDL-GVRGFVPASLVECHYVE 137
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---------ATLNLRE-GTLLEGTV 383
+F++ K++V + ++I I++D+N LILS R AT N E G++++G V
Sbjct: 138 DFSDYKDRV---ITMKIAEIDQDSNKLILSCRAVHEEAAQHQREATFNNIEIGSVVDGIV 194
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + +G + GL+HIS +S RV SD+LN G+ VK V+K +ISL
Sbjct: 195 RRLTDFGAFVDVGAVD--GLVHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISL 252
Query: 443 SIADLESEPGLFVSDKEV 460
SI D + P V D+ V
Sbjct: 253 SIRDTQPGPWSGVEDQLV 270
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 35/200 (17%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG----GLLTRIEGLRAFLPKA 326
S + +LS R + + A H+ E F G G++ R+ AF+
Sbjct: 158 SNKLILSCRAVHEEAAQHQR----------EATFNNIEIGSVVDGIVRRLTDFGAFVDVG 207
Query: 327 EL----------LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL- 371
+ RVN+ +++ +G + ++ + + ++ + LS R+ W+ +
Sbjct: 208 AVDGLVHISQISWQRVNHPSDVL-NIGDEVKCKVLKFDRESGRISLSIRDTQPGPWSGVE 266
Query: 372 -NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER--VK 428
L E +++G VK++ +GA + I GL+HIS +S + + S++L EG+ VK
Sbjct: 267 DQLVENDIVKGVVKRLVSFGAFVEIL-PGVEGLMHISEISHRHIVTPSEILKEGQEILVK 325
Query: 429 VLVVKSMFPDKISLSIADLE 448
+L V S ++SL++ D+E
Sbjct: 326 ILNVDSN-ARRVSLTMCDVE 344
>gi|113476121|ref|YP_722182.1| 30S ribosomal protein S1P [Trichodesmium erythraeum IMS101]
gi|110167169|gb|ABG51709.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 304
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS ++L W R+ +++ + +V+ N GG+ I+ LR F+P++ LL+R
Sbjct: 98 GEVLLSIKQLEINQIWERLAELEAGGQSFQVRVIGTNKGGVTVDIQSLRGFVPRSHLLAR 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N L ++V + V ++++ +++S+R A + L G LLEG V + P
Sbjct: 158 -DNLESLIDQV---LTVNFLELDQEKKKIVMSQRLATQSAGFSKLAVGQLLEGKVVGVKP 213
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + +GLLHI+ +S+ RV S+S + ++G VK ++V +ISLS L
Sbjct: 214 FGVFVDL--EGLTGLLHITQVSQKRVDSLSTIFSQGNLVKAMIVDLDEGRKRISLSTKVL 271
Query: 448 ESEPG 452
E+ PG
Sbjct: 272 ENYPG 276
>gi|383784774|ref|YP_005469344.1| 30S ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
gi|383083687|dbj|BAM07214.1| ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
Length = 585
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 18/201 (8%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
L G +LS + R W + + + +E K GG+ + GL+AFLP +++
Sbjct: 95 LHGNLVLSKEKADRMKVWDAIEESFNRGDVMEGKVVARIKGGMTVDV-GLKAFLPGSQID 153
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAW------ATLN-LREGTL 378
L V + L +G+ + V+I ++N+ ++I+S R E W T++ L+EG +
Sbjct: 154 LRPVRDMDRL---IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEV 210
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
LEG VK I YGA I +G + GLLHI++MS RV++ DL+N G+++ V+V+K
Sbjct: 211 LEGIVKNITDYGAFIDLGGID--GLLHITDMSWGRVSNPQDLMNVGDKLNVVVLKHDRDT 268
Query: 438 DKISLSIADLESEPGLFVSDK 458
++SL + L ++P V+ +
Sbjct: 269 GRVSLGLKQLSADPWTLVATR 289
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + ++ +I+E + L ++ W ++ R GT++ G VK + +GA + +
Sbjct: 340 VGDVVEARVLKIDEKNRKISLGLKQLGPNPWDSVEERYPIGTVVSGKVKSLTDFGAFVGL 399
Query: 396 GDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
D GL+HIS+MS T+ V S+L +G++V+V V+K ++SL L +P
Sbjct: 400 -DEGIDGLIHISDMSWTKHVRHPSELFKKGQKVEVAVLKIEKERQRLSLGFKQLSQDP 456
>gi|427730177|ref|YP_007076414.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427366096|gb|AFY48817.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 301
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W ++ Q+++ ++ +EV+ T N GG+ ++ LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEIQHIWDKLAQMQENSQTVEVRVTGVNKGGVTVDLQSLRGFIPRSHLAER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW--ATLNLRE-GTLLEGTVKKIYP 388
+N LK G+ + V + ++ + LILS+R A + LNL E G L+EG V I P
Sbjct: 156 -DNLEALK---GKNLTVALLEVDRNNKKLILSQRLATRSSNLNLLEIGQLVEGKVTGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + I S LLHI +S+ + S+ + G+++K +++ ++++S L
Sbjct: 212 FGVFVDI--DGISALLHIKQISQKFIDSIEKVFQVGQQIKAVIIDLDEGKGRVAISTRVL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|427722304|ref|YP_007069581.1| 30S ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
gi|427354024|gb|AFY36747.1| SSU ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
Length = 296
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 11/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W + Q + ++++ T N GG+ ++GLR F+P + L+ +
Sbjct: 91 GQVTLSRRKLEEKRIWEELAQAAESGSSVQIRITGSNRGGVTGDVKGLRGFVPNSHLVDK 150
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N L +G+ + V ++++ L+LS+R A +R+ G L+ G + I P
Sbjct: 151 --NVEAL---MGQVLTVNFLELDQERRKLVLSQRHAAQVEIMRKLSIGALVTGKIANIKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADL 447
YG + + +GLLH S +S +V + DL G+ V+VL+ K ISLS+ L
Sbjct: 206 YGVFVEL--DGMTGLLHRSQISDKQVPQLEDLFQVGQEVRVLITDVEESSKRISLSLKAL 263
Query: 448 ESEPG 452
E PG
Sbjct: 264 EKFPG 268
>gi|251772978|gb|EES53535.1| ribosomal protein S1 [Leptospirillum ferrodiazotrophum]
Length = 505
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS + R W + + + E +E K GG+ I GL+AFLP +++ L
Sbjct: 59 GNLVLSKEKADRMKVWDSLEALSEKGEVLEGKVISRIKGGMTVDI-GLKAFLPGSQIDLR 117
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAW-------ATLNLREGTLLE 380
V + L VG+ + V+I ++N+ ++I+S R E W +L+EG +LE
Sbjct: 118 PVRDMDRL---VGQPIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKLTMESLKEGEVLE 174
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA I +G + GLLHI++MS RV+S +L+ G+++ V+V+K +
Sbjct: 175 GIVKNITDYGAFIDLGGVD--GLLHITDMSWGRVSSPQNLMAVGDKINVMVLKHDKETGR 232
Query: 440 ISLSIADLESEP 451
+SL + L+S+P
Sbjct: 233 VSLGLKQLKSDP 244
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + ++ +I+E + L ++ W + R GT++ G VK + +G + +
Sbjct: 302 VGDTVEAKVLKIDEKNRKISLGLKQLGPNPWDLVEDRYPIGTIVSGKVKSLTDFGVFVGL 361
Query: 396 GDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
D GL+HIS++S TR V S++ +G++V+ +V+K ++SL + S+P
Sbjct: 362 -DEGIDGLIHISDLSWTRHVRHPSEMFKKGQKVEAIVLKIEKERQRLSLGYKQMASDP 418
>gi|225575700|ref|ZP_03784310.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
10507]
gi|225037080|gb|EEG47326.1| S1 RNA binding domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 301
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 36/265 (13%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPV--- 254
G +LT V+ + DKE+ DLK E G++ +D PG V
Sbjct: 22 GEILTGTVIGITDKEVTL---DLKYYTE--------GVIHVEDF-----SREPGFHVKDE 65
Query: 255 VETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
V TG + A V+ + +G LLS +AW ++ +K+ ++V G++
Sbjct: 66 VHTGDEVSAMVMSKDDGNGNILLSKVEADDVLAWEKLNTLKEEQTVLDVVIKGVVKSGVV 125
Query: 314 TRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--- 369
+EG+R F+P ++L LS V+N L+E + + + V++ ++++ LILS RE
Sbjct: 126 AYVEGVRGFIPASKLSLSYVDN---LEEYLNKPIQVRVFEVDKEKKRLILSAREILKEKA 182
Query: 370 -------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
N+ G + EG V+ + PYGA I +G+ SGL+HIS +S R+ S S +L
Sbjct: 183 DEERKAKISNVEVGLVTEGIVESLQPYGAFIDLGN-GLSGLVHISQISEKRIKSCSQVLA 241
Query: 423 EGERVKVLVVKSMFPDKISLSIADL 447
G++VKV V+ ++ K+SLS+ L
Sbjct: 242 VGDKVKVKVI-AIKDGKLSLSMKAL 265
>gi|317495376|ref|ZP_07953745.1| S1 RNA binding domain-containing protein [Gemella morbillorum M424]
gi|316914435|gb|EFV35912.1| S1 RNA binding domain-containing protein [Gemella morbillorum M424]
Length = 404
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 22/182 (12%)
Query: 282 FRKM---AWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTEL 338
FRK+ +W ++ + + E I + GGLL +EGLRAF+P + + ++ +L
Sbjct: 103 FRKLMELSWTQLIEKFEKGEFITATVSGQTKGGLLADVEGLRAFIPGSYIDTKFRK--DL 160
Query: 339 KEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLEGTVKKI 386
+ VG+ +I +++D N +IL+ R E + +N EG ++EG V +I
Sbjct: 161 SKFVGQEYTFKIEEVDKDKNKIILNRRVILEEERAKKLAEVYGNIN--EGDVIEGKVSRI 218
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIA 445
+GA I +G+ + GLLHIS +S RV+ VSD+L G+ VKV V+ +KISLS
Sbjct: 219 TDFGAFINLGEVD--GLLHISEISHARVSKVSDVLAVGDVVKVAVISVDKENEKISLSAK 276
Query: 446 DL 447
L
Sbjct: 277 TL 278
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 19/155 (12%)
Query: 311 GLLTRIEGLRAFLPKAEL----------LSRVNNFTELKEKVGRRMYVQITRINEDTNDL 360
G ++RI AF+ E+ +RV+ +++ VG + V + ++++ +
Sbjct: 213 GKVSRITDFGAFINLGEVDGLLHISEISHARVSKVSDVL-AVGDVVKVAVISVDKENEKI 271
Query: 361 ILSERE----AW--ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV 414
LS + W A ++ G +LEG V+ +GA + + D + GL+HIS +S RV
Sbjct: 272 SLSAKTLLPTQWEVARATIKVGDVLEGVVRNTTAFGAFVEVMD-DVEGLVHISQLSHERV 330
Query: 415 TSVSDLLNEGERVKVLVVKSMFP-DKISLSIADLE 448
+V D+L +G++V V V+ F +++SLSI +L+
Sbjct: 331 DNVEDVLKKGDKVTVKVLDIDFENERLSLSIKELQ 365
>gi|406927465|gb|EKD63494.1| RNA binding S1 protein [uncultured bacterium]
Length = 376
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 58/305 (19%)
Query: 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMV 229
P PG + G V+S +++++ +++G + G + KEV KD+ + +
Sbjct: 22 PIPGKLIDGTVISLSKSRILIDIGGVITGLITGKEV----------------KDSLDTIK 65
Query: 230 RGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
K+G D I+ S VL E G +LS RR ++ +W R
Sbjct: 66 NLKVG-----DTISAS--------------VLEVE----NEEGYAVLSLRRASQEKSWQR 102
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL----LSRVNN------FTELK 339
+ N IEV+ E N GGLL I+G++ F+P ++L RVN +L
Sbjct: 103 FADAYENNNIIEVRPNEANKGGLLLEIDGIKGFIPVSQLAPLHYPRVNGADSGMILQKLN 162
Query: 340 EKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTVKKIYPYGAQI 393
+ +G+ ++ +++D LILSE+ A A L+ G ++G + + +G I
Sbjct: 163 KLIGQLFDCKVIGLDKDNGKLILSEKAAQSAQRDTAMKKLKVGQKVKGRISGVVKFG--I 220
Query: 394 RIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGL 453
+ GL+HIS ++ V+ SD G+ V+VLV+ + DKISLS+ L +P +
Sbjct: 221 FVAFDGLEGLVHISEIAWGHVSDPSDYGRVGDEVEVLVI-GVDNDKISLSMKRLTPDPWI 279
Query: 454 FVSDK 458
+ K
Sbjct: 280 DAAQK 284
>gi|339319874|ref|YP_004679569.1| 30S ribosomal protein S1 [Candidatus Midichloria mitochondrii
IricVA]
gi|338225999|gb|AEI88883.1| 30S ribosomal protein S1 [Candidatus Midichloria mitochondrii
IricVA]
Length = 567
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS + R +AW + QI E ++ GG + G+ AFLP +++ R
Sbjct: 88 GRIILSREKALRDIAWSKFEQICTQGENVDGVIIGRVKGGFAVELSGIIAFLPGSQVDIR 147
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLE 380
V + + L G +I +++++ ++++S R N++EG++LE
Sbjct: 148 PVKDISVL---FGLAQPFKILKVDKENGNVVVSRRAILEDSRKEARQEQLANIQEGSVLE 204
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
GTVK + YGA I +G + GLLHI+++S ++++ S++L+ G+ VKV+V+K S +
Sbjct: 205 GTVKNLTDYGAFIDLGFMD--GLLHITDISWSKISHPSEVLSIGQVVKVIVIKYSAESQR 262
Query: 440 ISLSIADLESEP 451
+SL + LE+ P
Sbjct: 263 VSLGMKQLEANP 274
>gi|255535011|ref|YP_003095382.1| 30S ribosomal protein S1 [Flavobacteriaceae bacterium 3519-10]
gi|255341207|gb|ACU07320.1| SSU ribosomal protein S1p [Flavobacteriaceae bacterium 3519-10]
Length = 597
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG+ LS ++ AW RV ++ + E + GG++ + G+ AFLP +++
Sbjct: 110 SGQLQLSHKKARTLKAWDRVNELHETGEIVNGFVKSRTKGGMIVDVHGIEAFLPGSQI-- 167
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLRE-------GTLLE 380
V + + VG+ M ++ +IN + ++++S + EA RE G +LE
Sbjct: 168 DVKPIKDYDQFVGKTMEFKVVKINPEFKNVVVSHKALIEADLEGQKREIIGQLEKGQVLE 227
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
GTVK I YG + +G + GL+HI+++S +RV S++L++GE VKV+++ F D
Sbjct: 228 GTVKNITSYGVFVDLGGVD--GLIHITDLSWSRVNHPSEILSDGETVKVVILD--FDDEK 283
Query: 439 -KISLSIADLESEP 451
+I L + LE+ P
Sbjct: 284 TRIQLGMKQLEAHP 297
>gi|428218680|ref|YP_007103145.1| RNA binding S1 domain-containing protein [Pseudanabaena sp. PCC
7367]
gi|427990462|gb|AFY70717.1| RNA binding S1 domain protein [Pseudanabaena sp. PCC 7367]
Length = 296
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS RR+ + AW +++ + + N GG++ GLR F+P++ L +
Sbjct: 91 GEVKLSIRRMLIQKAWQQMQAYQAEETIFDCVVLHTNKGGVVVNAAGLRGFIPRSHLTVK 150
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL---NLREGTLLEGTVKKIYP 388
N L+ +G+ + V + INE TN L+LS A T NL +G L+ GTV I P
Sbjct: 151 DN----LESLIGKTLPVSVIEINEPTNRLVLSNTNAVRTSVMGNLAKGQLVAGTVSGIRP 206
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + SGLLHI +S+ RV ++ + G+ V +++ ++ISLS L
Sbjct: 207 FG--VFLNFDGVSGLLHIKEISQARVNDINAVFAIGDPVPAVIIDIDESRNRISLSTKLL 264
Query: 448 ESEPG 452
E+ G
Sbjct: 265 ENHSG 269
>gi|406967508|gb|EKD92572.1| RNA binding S1 protein [uncultured bacterium]
Length = 385
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL--- 328
G +LS R+ ++ AW R + NE I VK E N GGLL ++G++ F+P ++L
Sbjct: 77 GFVVLSLRKASQERAWRRFLDAYENNEVITVKPNEANKGGLLLEVDGIKGFIPVSQLAPL 136
Query: 329 -LSRVNN------FTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLRE 375
RVN F +LK+ + + V+I I+++ LILSER A+ A +L+
Sbjct: 137 HYPRVNGADANLIFDKLKKLISVPLSVKIINIDKENGKLILSERSAYQEERKNALKSLKV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G++++G + + +G I + GL+HIS ++ V SD G+ V+V V+ +
Sbjct: 197 GSVVKGKISGVVKFG--IFVAFDELEGLVHISEIAWGHVKDPSDYGKVGDPVEVQVI-GI 253
Query: 436 FPDKISLSIADLESEP 451
DKISLS+ L +P
Sbjct: 254 DGDKISLSMKRLIPDP 269
>gi|406885585|gb|EKD32746.1| RNA binding S1 protein [uncultured bacterium]
Length = 374
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 19/197 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-- 328
+G LS R +K AW ++Q+ +P+ VK E N GGL+ +++ FLP ++L
Sbjct: 87 NGEMELSFRFAGQKKAWDELKQLFAQGKPVMVKILEANKGGLIVKLQNTIGFLPVSQLAP 146
Query: 329 --LSRVNN------FTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLR 374
RV +KE VG + V+I +NE+ N LILSE+ W +
Sbjct: 147 EHYPRVTGGDKHKILERIKEFVGSEIEVRILDLNENENKLILSEKALWEEKQKNVIEKYK 206
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434
G ++EG V + +GA +R GL+HIS ++ R+ D+L G+ VK ++
Sbjct: 207 VGDIIEGEVTALADFGAFVRF--DGLEGLIHISEIAWQRIDHPRDILKAGQTVKAEII-G 263
Query: 435 MFPDKISLSIADLESEP 451
+ KI LS+ L +P
Sbjct: 264 LEGSKIFLSMKKLVDDP 280
>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
Length = 691
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 18/200 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ W +R+ + ++ +E T N GGL R+ G+ F+P +++
Sbjct: 358 GNVSLSTRRVEGMKNWKNLREAYENDQTVEGDVTGANKGGLTARVMGINGFVPASQIAPY 417
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATLNLREGTLLEGT 382
V NF K+ VG ++I I+E N L+LS + E W L EG ++ G
Sbjct: 418 FVKNF---KKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDE--LEEGQVITGK 472
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V ++ +GA I IG + GLLH+S+++ TRV D+LN G+ ++V ++K + ++IS
Sbjct: 473 VARLTDFGAFIEIG--SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRIS 530
Query: 442 LSIADLESEP-GLFVSDKEV 460
L L +P F ++ EV
Sbjct: 531 LGRKQLLEKPFAEFTNEHEV 550
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE------AWATLNLREGTLLEGTVKKIYPYGAQIRI 395
+G + V+I ++N++ N + L ++ A T G ++ G V + +GA + +
Sbjct: 511 IGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVITGKVVNLLDFGAFVEV 570
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
+ GL+H+S +S V SD LN G+ V+V ++ S+ P +KI LSI L+ P
Sbjct: 571 SEG-VEGLIHVSEISWDHVEKPSDELNVGDEVEVKIL-SIDPEEEKIGLSIKALKEAP 626
>gi|354567671|ref|ZP_08986839.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353542129|gb|EHC11593.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 300
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 102/187 (54%), Gaps = 14/187 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W R+ Q+++ ++ +EV+ N GG+ ++GLR F+P++ LL R
Sbjct: 96 GQVTLSRRQLEIKHIWERLAQMRENSQTVEVRVLNVNKGGVTVDLQGLRGFIPRSHLLER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-----WATLNLREGTLLEGTVKKI 386
+N LK G+ + V I+ + LILS+R A ++T L G L+EG + I
Sbjct: 156 -DNLESLK---GQTLTVSFLEIDRNNKKLILSQRLATRSASFSTFEL--GQLVEGKISGI 209
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIA 445
P+G + I S LLHI +++ + ++ + G+ +K +++ +++++S
Sbjct: 210 RPFGVFVDI--DGVSALLHIKQITQKFIDNLEKVFQVGQSIKAVIIDLDEGKNRVAVSTR 267
Query: 446 DLESEPG 452
LE+ PG
Sbjct: 268 VLENFPG 274
>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
Length = 401
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+TG A VL G +G S RL + A++++++ + PIE T
Sbjct: 63 RDLVKTGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYNKLQKDYEAGTPIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYMGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S V
Sbjct: 180 IEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
SD+L G+ VKV V+ ++ISLSI E P
Sbjct: 238 SDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP 272
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D N + LS ++ AT NL +G + EG V
Sbjct: 231 YKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQATANLHDGDIFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
Length = 406
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL W +++ E I V T GGL+ +G+R F+P + +
Sbjct: 92 GSYLLSIRRLEALKVWDEIKEKADKGETINVTVTRAVKGGLVVNADGVRGFIPASMITDH 151
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLE 380
V++ + K G+ + V+I + + N LILS R EA + L+ G ++E
Sbjct: 152 FVDDLNQFK---GQELEVKIIEVVPEENRLILSHRAIAEAERKEARDRIMSTLKPGDIVE 208
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
G V ++ +GA + +G + GL+H+S +S V SD+L GE VKV V+ S+ PD+
Sbjct: 209 GKVARLTNFGAFVDLGGID--GLVHVSEISYEHVNKPSDVLKVGEEVKVKVL-SVDPDRN 265
Query: 441 SLSIADLESEPG 452
+S++ +++PG
Sbjct: 266 RISLSIKQTQPG 277
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 15/191 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + RK A R+ + + +E K G + G+ + +E+
Sbjct: 177 RLILSHRAIAEAERKEARDRIMSTLKPGDIVEGKVARLTNFGAFVDLGGIDGLVHVSEIS 236
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGT 382
VN +++ KVG + V++ ++ D N + LS ++ W+ + + +G++L+G
Sbjct: 237 YEHVNKPSDVL-KVGEEVKVKVLSVDPDRNRISLSIKQTQPGPWSDIEEKAPKGSVLDGK 295
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
VK++ +GA + + GL+HIS +S + SD+L GE VKV V+ + P+ ++
Sbjct: 296 VKRLVDFGAFVEVF-PGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVL-DVQPEEHRL 353
Query: 441 SLSIADLESEP 451
+LS+ LE +P
Sbjct: 354 ALSMKALEKDP 364
>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
Length = 692
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 106/200 (53%), Gaps = 18/200 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ W +R+ + ++ +E T N GGL R+ G+ F+P +++
Sbjct: 358 GNVALSTRRVEGMKNWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQIAPY 417
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATLNLREGTLLEGT 382
V NF K+ VG ++I I+E N L+LS + E W L EG ++ G
Sbjct: 418 FVKNF---KKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDE--LEEGQVITGK 472
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V ++ +GA + IG + GLLH+S+++ TRV D+LN G+ ++V ++K + ++IS
Sbjct: 473 VARLTDFGAFVEIG--SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRIS 530
Query: 442 LSIADLESEP-GLFVSDKEV 460
L L +P F ++ EV
Sbjct: 531 LGRKQLLEKPFAEFTNNHEV 550
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE------AWATLNLREGTLLEGTVKKIYPYGAQIRI 395
+G + V+I ++N++ N + L ++ A T N G ++ G V + +GA + +
Sbjct: 511 IGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVEV 570
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
+ GL+H+S +S V SD L G+ V+V ++ S+ P +KI LSI L+ P
Sbjct: 571 SEG-VEGLIHVSEISWEHVEKPSDELTVGDEVEVKIL-SIDPEEEKIGLSIKALKEAP 626
>gi|347753337|ref|YP_004860902.1| RNA binding S1 domain-containing protein [Bacillus coagulans 36D1]
gi|347585855|gb|AEP02122.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
Length = 378
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 20/185 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R+ + AW +++ + E IE + E GGL+ + G+R F+P + + V
Sbjct: 80 ILSKRKYDAEKAWDELKEKFENQEIIEAEVNEVVKGGLVVDL-GVRGFVPASLVEDHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTV 383
+F++ K G+ + I ++ED N LILS R +L G +LEGTV
Sbjct: 139 DFSDYK---GKTLPFLIVELDEDKNRLILSHRAVVEKEKEEKRQDILDHLEAGQVLEGTV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
+++ +GA + IG + GL+HIS ++ RV + SD++ EGE+VKV V+ S+ D +IS
Sbjct: 196 QRLTSFGAFVDIGGID--GLVHISQLAHERVETPSDVVQEGEQVKVKVL-SVDRDNGRIS 252
Query: 442 LSIAD 446
LSI D
Sbjct: 253 LSIKD 257
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 262 FAEVLGRTL----------SGRPLLSTRRLFRKMAWHRVRQIK---QLNEPIEVKFTEWN 308
F++ G+TL R +LS R + K + + I + + +E
Sbjct: 140 FSDYKGKTLPFLIVELDEDKNRLILSHRAVVEKEKEEKRQDILDHLEAGQVLEGTVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAELLS-RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
+ G I G+ + ++L RV +++ ++ G ++ V++ ++ D + LS ++
Sbjct: 200 SFGAFVDIGGIDGLVHISQLAHERVETPSDVVQE-GEQVKVKVLSVDRDNGRISLSIKDT 258
Query: 368 ----WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W + + +GT+L GTVK++ +GA + + GL+HIS +S V++ ++L
Sbjct: 259 LPGPWEGIEQKAPKGTVLTGTVKRLVSFGAFVEVF-PGVEGLVHISQISHKHVSTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLE 448
EG+ V+V V+ + ++SLS+ +LE
Sbjct: 318 REGQEVQVKVLDVNEQAHRLSLSMKELE 345
>gi|295293739|gb|ADF88266.1| RNA-binding S1 domain-containing protein [Aphanizomenon sp. 10E6]
Length = 300
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 30/269 (11%)
Query: 213 MDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F +VRGK+ V D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQVVRGKVFQVDHDGAYVDIGGKSSAFLPQEEASLRAVADLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VL F + + G+ +S ++L K W ++ ++++ ++ ++V+ T N GG+
Sbjct: 77 VLPMNEELEFLIIRDQDAEGQVTISRKQLEVKQIWEKLLEMQENSQSVQVRVTGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
+ G+R F+P++ + R +N LK G+ + V IN +TN L+LS+R A + N
Sbjct: 137 TVDLLGVRGFIPRSHIAER-DNLEALK---GQTLTVGFLEINRETNKLVLSQRLAARSSN 192
Query: 373 ---LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
L G L+EG + I P+G + + + S LLHI +S+ + S+ + G+ +K
Sbjct: 193 FSLLEIGQLIEGKITGIKPFG--VFVDFNGVSALLHIKQVSQKFIDSLEKIFQIGQPIKA 250
Query: 430 LVVK-SMFPDKISLSIADLESEPGLFVSD 457
+++ ++++S LE+ PG V +
Sbjct: 251 VIIDLDEGKGRVAISTRILENFPGEVVEN 279
>gi|342214801|ref|ZP_08707474.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 780 str. F0422]
gi|341590624|gb|EGS33861.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 780 str. F0422]
Length = 635
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 249 GPGRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
+ V++ G + A +L P+ LS RL + W V + ++ +EPI K +
Sbjct: 332 ASAKDVLKEGDKIKAVILNHIKEDSPIYLSITRLAKDEDWQYVIEAQEKDEPIICKGVDA 391
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
GL+ ++ LR F+P ++ ++ L VG ++ + E N L+LS RE
Sbjct: 392 IPAGLVVTVKSLRGFIPLSQ--GDIHFVKSLDNLVGTEFEAKVLEVEEKKNRLVLSRREV 449
Query: 368 W----------ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
A N+ G +GTV+KI PYGA + IG GLLHIS++S ++ V
Sbjct: 450 LEVERQAKLKEALANVEVGGTYKGTVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKRV 507
Query: 418 SDLLNEGERVKVLVVKSMFPD---KISLSIADLESEPGLFVSDKEVHI 462
D+L G+ + V + F + KISLS+ L P V+++ +H+
Sbjct: 508 EDVLAVGQEIDVKL--QSFDEENSKISLSLKALSKSP-WDVAEETIHV 552
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ +E+ + + LS + W A + G ++ G V + YGA + I
Sbjct: 513 VGQEIDVKLQSFDEENSKISLSLKALSKSPWDVAEETIHVGDVVTGKVVRTVQYGAFVAI 572
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
D + GLLHIS +++ R V D L+ G+ V+V V+
Sbjct: 573 ND-DIQGLLHISQVTKQRNAKVEDYLSRGQEVEVEVI 608
>gi|295108633|emb|CBL22586.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
Length = 301
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +AW ++ ++K+ E I V G++ +EG+R F+P ++L
Sbjct: 84 GNILLSRVEASDILAWDKLEELKKSGEIINVVVKGITNAGVIAYVEGVRGFIPASKL--A 141
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEG 381
+ + +E + + + VQ +++D+ LILS +E NL G + EG
Sbjct: 142 LGYVEDTEEYLNKPIQVQAIDVDKDSKKLILSAKEILRAKAEEERKNKVSNLEIGLVTEG 201
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKIS 441
TV+ + PYGA + +G+ SGL+HIS + R+ S++L G++VKV V ++ K+S
Sbjct: 202 TVESLQPYGAFVDLGN-GLSGLVHISQICEKRIKKPSEVLAVGDKVKVKVT-AIKDGKLS 259
Query: 442 LSI 444
LSI
Sbjct: 260 LSI 262
>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 692
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 106/200 (53%), Gaps = 18/200 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ W +R+ + ++ +E T N GGL R+ G+ F+P +++
Sbjct: 358 GNVALSTRRVEGMKNWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQIAPY 417
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATLNLREGTLLEGT 382
V NF K+ VG ++I I+E N L+LS + E W L EG ++ G
Sbjct: 418 FVKNF---KKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDE--LEEGQVITGK 472
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V ++ +GA + IG + GLLH+S+++ TRV D+LN G+ ++V ++K + ++IS
Sbjct: 473 VARLTDFGAFVEIG--SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRIS 530
Query: 442 LSIADLESEP-GLFVSDKEV 460
L L +P F ++ EV
Sbjct: 531 LGRKQLLEKPFAEFTNNHEV 550
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE------AWATLNLREGTLLEGTVKKIYPYGAQIRI 395
+G + V+I ++N++ N + L ++ A T N G ++ G V + +GA + +
Sbjct: 511 IGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVEV 570
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
+ GL+H+S +S V SD L G+ V+V ++ S+ P +KI LSI L+ P
Sbjct: 571 SEG-VEGLIHVSEISWEHVEKPSDELTVGDEVEVKIL-SIDPEEEKIGLSIKALKEAP 626
>gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 383
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 52/300 (17%)
Query: 170 PKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMV 229
PK G+ V G V+ ++ + VN+G G + E+ + D+ K +E V
Sbjct: 19 PKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDEI----SNDPTITPQDVAKADDEISV 74
Query: 230 RGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHR 289
I+K DD G LLST+R+ W
Sbjct: 75 Y----IIKTDDG-----------------------------EGNVLLSTKRVEHTKGWED 101
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQ 349
+ +I +E K E GG++ G+R F+P ++L R +LK VG+ +
Sbjct: 102 LEKIHDTESLVESKVVESVKGGVIAIARGIRCFIPASQLSDRY--VDDLKTFVGKSFNAK 159
Query: 350 ITRINEDTNDLILSEREAWATLN----------LREGTLLEGTVKKIYPYGAQIRIGDSN 399
+ I+ N +LS +E N L +G + G VK++ +GA + IG +
Sbjct: 160 VIEIDRQKNKAVLSRKEVLQQENKEKKADVFAKLEKGMQIRGEVKRLTNFGAFVDIGGID 219
Query: 400 RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
GL+HIS +S RV + S++++ ++V+V V+ K+SLSI + EP ++DK
Sbjct: 220 --GLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGKVSLSIKQTQPEPWTLIADK 277
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G+ + +EL RV N +E+ V ++ V++ +E T + LS +
Sbjct: 210 GAFVDIGGIDGLVHISELSWGRVKNPSEVV-SVEDQVEVKVIDFDETTGKVSLSIKQTQP 268
Query: 366 EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
E W + + G +LEG V ++ +GA + + GL+HIS +S + S+ L+
Sbjct: 269 EPWTLIADKFKAGDILEGKVVRLVDFGAFVELM-PGLDGLVHISQISEAHIAKPSEELHV 327
Query: 424 GERVKVLVVK-SMFPDKISLSIA 445
G+ V V V+ ++ +ISLS+
Sbjct: 328 GQNVNVKVLDINIDGKRISLSMT 350
>gi|354558294|ref|ZP_08977550.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium metallireducens DSM 15288]
gi|353549019|gb|EHC18463.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium metallireducens DSM 15288]
Length = 670
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 108/198 (54%), Gaps = 16/198 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G P+LS RR + A R+ Q+ + E ++ K TE GGLL + G+R F+P +++ +
Sbjct: 369 GNPVLSKRRAAEEEASERLEQLAESKEELQAKVTEVVKGGLLVDV-GMRGFVPASQI--Q 425
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLEG 381
+ +LK+ +G+ + +++ + + ++LS++ A L+EG + G
Sbjct: 426 LGYVEDLKQFLGQTLRLRVIEFDPAKHKVVLSQKVILAEEQVSKRAELFETLQEGDTVTG 485
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V+++ +GA + IG + GLLH+S M+ +RV S+++N G+ V+V V+K K+
Sbjct: 486 VVRRLADFGAFVDIGGVD--GLLHVSEMAYSRVKHPSEIVNVGDEVEVQVLKLDKEHSKV 543
Query: 441 SLSIADLESEPGLFVSDK 458
SL + L+ P V+ K
Sbjct: 544 SLGLKQLKPSPWDAVAQK 561
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
G I G+ L +E+ SRV + +E+ VG + VQ+ +++++ + + L ++
Sbjct: 494 GAFVDIGGVDGLLHVSEMAYSRVKHPSEIV-NVGDEVEVQVLKLDKEHSKVSLGLKQLKP 552
Query: 367 -AWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + + G+L+ G V ++ P+GA +++ D L+HIS +S RV V D++
Sbjct: 553 SPWDAVAQKYALGSLVTGKVVRLAPFGAFVQLED-GVDALVHISQLSEKRVAKVEDVVKV 611
Query: 424 GERVKVLVVKSMFPDK-ISLSIADLESE 450
G+ V+ V++ +K ISLSI + SE
Sbjct: 612 GDMVQAKVIECKPEEKRISLSIREAISE 639
>gi|399022557|ref|ZP_10724631.1| ribosomal protein S1 [Chryseobacterium sp. CF314]
gi|398084617|gb|EJL75295.1| ribosomal protein S1 [Chryseobacterium sp. CF314]
Length = 597
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ LS R+ AW +V ++ + E + GG++ + G+ AFLP +++
Sbjct: 110 TGQLQLSHRKARTLKAWDKVNELHETGEIVNGFVKSRTKGGMIVDVHGIEAFLPGSQI-- 167
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S + + L +G +LE
Sbjct: 168 DVKPIKDYDQFVGKTMEFKVVKINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLE 227
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
GTVK I YG I +G + GL+HI+++S +RV S++L +G+ VKV+++ F D
Sbjct: 228 GTVKNITSYGVFIDLGGVD--GLIHITDLSWSRVNHPSEILEDGQTVKVVILD--FDDEK 283
Query: 439 -KISLSIADLESEP 451
+I L + LE+ P
Sbjct: 284 TRIQLGMKQLEAHP 297
>gi|336114247|ref|YP_004569014.1| RNA binding S1 domain-containing protein [Bacillus coagulans 2-6]
gi|335367677|gb|AEH53628.1| RNA binding S1 domain protein [Bacillus coagulans 2-6]
Length = 378
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 20/185 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R+ + AW +++ + E IE + E GGL+ + G+R F+P + + V
Sbjct: 80 ILSKRKYDAEKAWDELKEKFENQEIIEAEVNEVVKGGLVVDL-GVRGFVPASLVEDHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTV 383
+F++ K G+ + I ++ED N LILS R +L G +LEGTV
Sbjct: 139 DFSDYK---GKTLPFLIVELDEDKNRLILSHRAVVEKEKEEKRQDILDHLEAGQVLEGTV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
+++ +GA + IG + GL+HIS ++ RV + SD++ EGE+VKV V+ S+ D +IS
Sbjct: 196 QRLTNFGAFVDIGGID--GLVHISQLAHERVETPSDVVKEGEKVKVKVL-SVDRDNGRIS 252
Query: 442 LSIAD 446
LSI D
Sbjct: 253 LSIKD 257
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIR 394
K G ++ V++ ++ D + LS ++ W + + +GT+L GTVK++ +GA +
Sbjct: 232 KEGEKVKVKVLSVDRDNGRISLSIKDTLPGPWEGIEQKAQKGTVLTGTVKRLVSFGAFVE 291
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLES 449
+ GL+HIS +S V++ ++L EG+ V+V V+ + ++SLS+ +LE
Sbjct: 292 VF-PGVEGLVHISQISHKHVSTPHEVLREGQEVQVKVLDVNEQAHRLSLSMKELEQ 346
>gi|220909013|ref|YP_002484324.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865624|gb|ACL45963.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 292
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRA 321
F + G+ G+ LS +RL K W R + +++ I+V+ T N GGL +G+R
Sbjct: 75 FLIIRGQDAEGQISLSLKRLEIKALWERYQSLQESQGAIDVRVTGVNKGGLTVDAKGIRG 134
Query: 322 FLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTL 378
F+P+ + V L+ VG+ + V I + + L+ S++ A L+E G L
Sbjct: 135 FIPR----THVVGAETLESLVGQTLTVTILEADPERKRLVCSQKIARRQQRLQEFDYGQL 190
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
++GTV+ I PYG I + + GLLHI++ S RV S+ + G +K +V
Sbjct: 191 VQGTVRDIRPYGLMIDL--TGVLGLLHINDFSEKRVGSLQAHVQVGTPIKAIVTNLDAER 248
Query: 438 DKISLSIADLESEPG 452
+ISLS LE+ PG
Sbjct: 249 GRISLSTRLLENRPG 263
>gi|403383191|ref|ZP_10925248.1| 30S ribosomal protein S1 [Kurthia sp. JC30]
Length = 393
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R++ AW +++ E IE + + GGL+ + G+R F+P A L+
Sbjct: 84 TGNYVLSKRQVDAVAAWKTLKEKFDDGEVIEAEVKDVVKGGLVVDL-GVRGFVP-ASLVE 141
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTL 378
V F + K G+ + +I ++++ N LILS R ++EG +
Sbjct: 142 DYFVETFDDYK---GKSLKFKIVEMDQEKNRLILSHRAVLEEEKAEKKVEVINTIKEGDV 198
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP- 437
L+GTV++I +GA + IG + GL+HIS ++ V++V D+L EG++VKV V+ S+ P
Sbjct: 199 LDGTVQRIAAFGAFVDIGGVD--GLVHISQVAHEHVSNVYDVLKEGQQVKVKVL-SVDPV 255
Query: 438 -DKISLSIAD 446
++ISLSI D
Sbjct: 256 NERISLSIKD 265
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKI 386
N + LKE G+++ V++ ++ + LS ++ W + + +G +L+G V+++
Sbjct: 234 NVYDVLKE--GQQVKVKVLSVDPVNERISLSIKDTLPGPWEGIEEKAPKGAVLDGVVRRL 291
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIA 445
+GA + + GL+HIS ++ + + ++L EG+ V+V V++ S +++LSI
Sbjct: 292 VTFGAFVEVF-PGVEGLVHISQIAHKHINTPHEMLQEGQEVQVKVLEVSEDEKRLALSIR 350
Query: 446 DL 447
+L
Sbjct: 351 EL 352
>gi|291562264|emb|CBL41080.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
Length = 298
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 36/263 (13%)
Query: 197 LGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDA-----IAMSGGSGPG 251
+G ++T V+ + D D ++ DLK A+ G+++ DD M+ PG
Sbjct: 20 VGDVVTGTVIDVTD---DAVIVDLKAYAD--------GVIRKDDLSEDPDFNMAEMIHPG 68
Query: 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311
+ T TV+ G +LS + + +AW +++ + + + VK E G
Sbjct: 69 DEI--TATVMAT----NDGEGNMVLSKKEANQVLAWDKLKNMMEERTVVPVKIAEIVNAG 122
Query: 312 LLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL 371
+ +EG+R F+P + L +LKE G+ + V + +E+T+ L+LS REA
Sbjct: 123 AVAYLEGIRGFIPASRLSDEY--VEDLKEFDGKTIEVTVITADEETHRLVLSGREAAREK 180
Query: 372 NLRE----------GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
E G +++GTV+ + YGA + + ++ +GLLHIS +S R+ +L
Sbjct: 181 KQEETNKKIAKCEVGAVMKGTVETLKDYGAFVEL-ENGLTGLLHISQISTKRIKHPGAVL 239
Query: 422 NEGERVKVLVVKSMFPDKISLSI 444
EG+ V+V ++ S +KISLS+
Sbjct: 240 KEGQEVRVKII-STANNKISLSM 261
>gi|17228573|ref|NP_485121.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17130424|dbj|BAB73035.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 305
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L W ++ Q+K+ ++P++VK T N GG+ ++ LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEINHIWEKLAQMKENSQPVDVKVTGVNKGGVTVDVQSLRGFIPRSHLTER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+N LK G + ++ + L+LS+R + N + G L+EG + I P
Sbjct: 156 -DNLEALK---GHTLTAGFLEVDRNNKKLVLSQRLVTRSSNFNQLEIGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + S LLHI +S+ + S+ + G+ +K +V+ ++++S L
Sbjct: 212 FGVFVDL--NGLSALLHIKQVSQKFIESLEKVFQPGQTIKAIVIDLDQGKGRVAISTRAL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|300778889|ref|ZP_07088747.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
gi|300504399|gb|EFK35539.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
Length = 596
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ LS R+ AW +V ++ + E + GG++ + G+ AFLP +++
Sbjct: 110 TGQLQLSHRKARTLKAWDKVNELHETGEIVNGFVKSRTKGGMIVDVHGIEAFLPGSQI-- 167
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S + + L +G +LE
Sbjct: 168 DVKPIKDYDQFVGKTMEFKVVKINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLE 227
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
GTVK I YG I +G + GL+HI+++S +RV S++L +G+ VKV+++ F D
Sbjct: 228 GTVKNITSYGVFIDLGGVD--GLIHITDLSWSRVNHPSEILEDGQTVKVVILD--FDDEK 283
Query: 439 -KISLSIADLESEP 451
+I L + LE+ P
Sbjct: 284 TRIQLGMKQLEAHP 297
>gi|153814341|ref|ZP_01967009.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756]
gi|317500055|ref|ZP_07958290.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087715|ref|ZP_08336641.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438143|ref|ZP_08617784.1| hypothetical protein HMPREF0990_00178 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848737|gb|EDK25655.1| S1 RNA binding domain protein [Ruminococcus torques ATCC 27756]
gi|316898540|gb|EFV20576.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409696|gb|EGG89132.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336015187|gb|EGN45011.1| hypothetical protein HMPREF0990_00178 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 239
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 14/172 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+ V + + + VK GG++ IEGLR F+P ++L ++ +L+ + + +
Sbjct: 41 WNLVTKYMEEKTVLPVKVEGVVNGGVIVMIEGLRGFVPASKL--SLSYIEDLETYLLKEI 98
Query: 347 YVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
VQ+ ++ N L+LS RE NL+ G +LEGTV+ + YGA I++
Sbjct: 99 EVQVIDADQANNRLVLSARELLKEKEKKAREDQIANLKIGEVLEGTVETLQNYGAFIKL- 157
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
D+ SGL+H+S +S+ RV SD+LN G++V V V+ + KISLS+ LE
Sbjct: 158 DNGLSGLVHVSQISQKRVKLPSDVLNAGDKVTVKVI-GIKDGKISLSMKALE 208
>gi|443475240|ref|ZP_21065196.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019959|gb|ELS33979.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS RRL K AW +R + ++ E K N+GG++ GLR F+P++ L
Sbjct: 92 GEVKLSVRRLLFKQAWQTLRDYQAESKVFETKVIGTNSGGVIVDSVGLRGFIPRSHL--- 148
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA--WATLN-LREGTLLEGTVKKIYP 388
++ ++L + VG+ + V + +E L+LS R+A A +N L +G L+ G V I P
Sbjct: 149 -SDTSDLAKLVGKILPVVVLDADETRKKLVLSNRQAAKLAAMNQLAKGQLITGKVTNIRP 207
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+GA + + SGLLHI MS+ V + + + +K +VV D+I+LS L
Sbjct: 208 FGAFVEF--AGVSGLLHIKEMSQKPVNDPTHVFQINDIIKAVVVDIDESRDRIALSTKIL 265
Query: 448 ESEPG 452
E G
Sbjct: 266 ELHAG 270
>gi|427414340|ref|ZP_18904530.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
ratti ACS-216-V-Col6b]
gi|425714716|gb|EKU77719.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
ratti ACS-216-V-Col6b]
Length = 631
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 36/282 (12%)
Query: 201 LTKEVLPLYDKEMDFLLCDLKKDAEEF----MVRGKMGIVKDDDAIAMSG---------- 246
+ KEV+ + E + LL + AE+F +V G + V+DD A G
Sbjct: 265 IIKEVIDTMN-EFEQLLANEADWAEDFKKGTVVEGTVVSVEDDKAYVSFGYKTEATLNRT 323
Query: 247 -----GSGPGRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPI 300
+ V++ G + A ++ P+ LS RL + W V++ ++ +EPI
Sbjct: 324 EIAYPAPASAKDVLKEGDQIKAVIMNHIKEDNPIYLSITRLAKDEDWQYVQEAQEKDEPI 383
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDL 360
K + GL+ ++ LR F+P ++ V+ L VG ++ I+E N L
Sbjct: 384 ICKGVDAIPAGLVVTVKSLRGFIPLSQ--GDVHFVKSLDSLVGTEFEAKVLEIDEKKNRL 441
Query: 361 ILSEREAW----------ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS 410
+LS R A N+ G +G V+KI PYGA + IG GLLHIS++S
Sbjct: 442 VLSRRAVLEVARQAKLEEALKNINVGDNYKGIVRKIMPYGAFVDIG--GIEGLLHISDIS 499
Query: 411 RTRVTSVSDLLNEGERVKV-LVVKSMFPDKISLSIADLESEP 451
++ V D+L+ G+ ++V L +K+SLS+ L P
Sbjct: 500 WHKIKRVEDVLSVGQEIEVKLQSFDAESNKLSLSLKALTKSP 541
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A ++ G +L G V ++ YGA + +
Sbjct: 512 VGQEIEVKLQSFDAESNKLSLSLKALTKSPWDVAEETIKVGDVLTGKVVRLVAYGAFVAV 571
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D L G+ V+V V+ S+ D+ L +A
Sbjct: 572 ND-DIQGLLHISQITKQRNAKVEDYLTRGKEVEVKVI-SLNKDEKKLGLA 619
>gi|377809630|ref|YP_005004851.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
gi|361056371|gb|AEV95175.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
Length = 405
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 20/205 (9%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ +++ G LLS +RL + W ++ + NE +EV T+ GGL+ G+
Sbjct: 80 VVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLEVPVTQVVKGGLVVD-AGV 138
Query: 320 RAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---------A 369
R F+P + + +R VNN + + G+ + V+I I+ N LILS ++
Sbjct: 139 RGFIPASMIENRFVNNLSAYE---GKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREE 195
Query: 370 TLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
LN + EG ++EG V ++ +GA I +G GL+HIS +S RV D+L GE VK
Sbjct: 196 VLNSIHEGDIVEGKVARLTNFGAFIDLG--GMDGLVHISEISYERVNKPEDVLKVGEDVK 253
Query: 429 VLVVKSMFP--DKISLSIADLESEP 451
V V+ S+ P ++ISLSI + P
Sbjct: 254 VKVL-SVDPERNRISLSIKQTLAGP 277
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 300 IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTND 359
+E K G + G+ + +E+ N E KVG + V++ ++ + N
Sbjct: 206 VEGKVARLTNFGAFIDLGGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNR 265
Query: 360 LILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
+ LS ++ W + + G +L+G VK++ +GA + + GL+HIS +S
Sbjct: 266 ISLSIKQTLAGPWDDIETKAPVGAVLDGKVKRLTDFGAFVEVF-PGVEGLVHISQISHKH 324
Query: 414 VTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ + D+L GE VKV V+ + P+ +++LSI LE P
Sbjct: 325 IATPGDVLKSGEDVKVKVL-DVRPEEHRLALSIKALEEAP 363
>gi|303229902|ref|ZP_07316678.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
atypica ACS-134-V-Col7a]
gi|302515458|gb|EFL57424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
atypica ACS-134-V-Col7a]
Length = 632
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 19/225 (8%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +EPI K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEPIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKVLVVKSMFP--DKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V ++S P +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVK-LQSFDPESNKLSLSLKALTKSP-WDVAEETLHV 549
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDPESNKLSLSLKALTKSPWDVAEETLHVGDVITGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|303232061|ref|ZP_07318764.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
atypica ACS-049-V-Sch6]
gi|401680092|ref|ZP_10812016.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
ACP1]
gi|429759352|ref|ZP_19291851.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
atypica KON]
gi|302513167|gb|EFL55206.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
atypica ACS-049-V-Sch6]
gi|400219219|gb|EJO50090.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
ACP1]
gi|429179628|gb|EKY20867.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
atypica KON]
Length = 632
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 19/225 (8%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +EPI K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEPIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKVLVVKSMFP--DKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V ++S P +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVK-LQSFDPESNKLSLSLKALTKSP-WDVAEETLHV 549
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDPESNKLSLSLKALTKSPWDVAEETLHVGDVITGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|159472705|ref|XP_001694485.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
gi|40641370|emb|CAE51165.1| ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
gi|158276709|gb|EDP02480.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
Length = 436
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ ++S + W R+RQ+++ + + V N GG+L + F+P ++
Sbjct: 203 GQVIVSLAAMEATTFWQRIRQLQEEDITVTVSVESVNKGGMLVKFGIYDGFIPVSQFGPS 262
Query: 332 V--NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN-----LREGTLLEGTVK 384
+ +N L VG + V+ ++E+ L+ S + A +T++ + G ++ G V+
Sbjct: 263 ITPDNMESL---VGFELQVKFLEVDEEAERLVFSHKRASSTVSNDIQGFKVGDVVAGVVQ 319
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLS 443
+ PYGA I +G +GLLH+S +S RV + +L EG+++KV+++ + +++LS
Sbjct: 320 SVKPYGAFIDLG--GVTGLLHVSQISHDRVLVLDKILQEGDKIKVMILSQDRERGRVTLS 377
Query: 444 IADLESEPGLFVSDKEV 460
LE PG + D ++
Sbjct: 378 TKKLEPTPGDMLRDPQL 394
>gi|403667479|ref|ZP_10932784.1| 30S ribosomal protein S1 [Kurthia sp. JC8E]
Length = 392
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R++ AW +++ + E IE + + GGL+ + G+R F+P A L+
Sbjct: 84 TGNYVLSKRQVDAVAAWDVLKKQFESGEVIESEVKDVVKGGLVIDL-GVRGFVP-ASLVE 141
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTL 378
V F + K G+ + +I ++++ N LILS R L ++EG +
Sbjct: 142 DYFVETFDDYK---GKTLQFKIVEMDQEKNRLILSHRAVLEDLKAEKKVEVINTIKEGDI 198
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP- 437
L GTV++I +GA + IG + GL+HIS ++ V++V D+L+EG+ V+V V+ S+ P
Sbjct: 199 LTGTVQRIATFGAFVDIGGVD--GLVHISQVAHEHVSNVYDVLSEGQEVQVKVL-SVDPV 255
Query: 438 -DKISLSIADLESEP 451
++ISLSI D + P
Sbjct: 256 NERISLSIKDTLAGP 270
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
G++L G V+++ +GA + + GL+HIS ++ + + ++L EG+ V+V V++ S
Sbjct: 281 GSVLTGVVRRLVTFGAFVEVF-PGVEGLVHISQIAHKHINTPHEVLEEGQEVQVKVLEVS 339
Query: 435 MFPDKISLSIADL 447
+++LSI +L
Sbjct: 340 EDEKRLALSIREL 352
>gi|75909936|ref|YP_324232.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75703661|gb|ABA23337.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 302
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L W ++ Q+K+ ++P++VK T N GG+ ++ LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEINHIWEKLAQMKENSQPVDVKVTGVNKGGVTVDVQSLRGFIPRSHLTER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+N LK G + ++ + L+LS+R + N + G L+EG + I P
Sbjct: 156 -DNLEALK---GHTLTAGFLEVDRNNKKLVLSQRLVTRSSNFNQLEIGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + S LLHI +S+ + S+ + G+ +K +V+ ++++S L
Sbjct: 212 FGVFVDL--NGLSALLHIKQVSQKFIESLEKVFQPGQTIKAIVIDLDQGKGRVAISTRAL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|352518176|ref|YP_004887493.1| 30S ribosomal protein S1 [Tetragenococcus halophilus NBRC 12172]
gi|348602283|dbj|BAK95329.1| 30S ribosomal protein S1 [Tetragenococcus halophilus NBRC 12172]
Length = 405
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 20/189 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + Q E IE T GGL+ + G+R F+P + +
Sbjct: 94 NGSYLLSKRRLDAKKVWEEIEEKYQNGETIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 152
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLL 379
V++F E K G+ + +I I N LILS + ++ EG ++
Sbjct: 153 YFVDDFNEYK---GKTLEFKIIEIEPSENRLILSHKAIVEEEKEQKKAELLASISEGDVI 209
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-- 437
EGTV ++ +GA I +G + GL+H+S +S + V SD+L+ G++V V V+ S+ P
Sbjct: 210 EGTVARLTDFGAFIDLGGID--GLVHVSEISHSHVGKPSDVLSVGDKVNVAVL-SVDPTT 266
Query: 438 DKISLSIAD 446
+++SLSI D
Sbjct: 267 ERVSLSIKD 275
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 66/114 (57%), Gaps = 10/114 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRI 395
VG ++ V + ++ T + LS ++ W + + +G +LEGTVK++ +GA + +
Sbjct: 251 VGDKVNVAVLSVDPTTERVSLSIKDTLPGPWTDIEEKAPKGAVLEGTVKRLTSFGAFVEV 310
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADL 447
GL+HIS +S + + ++L+EG++++V V+ + P+ +I+LSI L
Sbjct: 311 F-PGVEGLVHISQISHKHIATPHEVLSEGDQIQVKVL-DVNPEEHRIALSIKAL 362
>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
Length = 382
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ E +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEMYYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVEQELESKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +GD + GL+HIS +S RV SD+L +G+ VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGDVD--GLVHISQISHDRVEQPSDVLTQGQSVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ DT + LS + A W ++ ++ G + EG VK+I +GA + I
Sbjct: 235 GQSVKVKVLSVDADTQRISLSIKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEIL 294
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIAD 446
GL+H+S ++ V + +++L G+ VKV V++ +K ISLSI +
Sbjct: 295 -PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKE 344
>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
Length = 383
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 108/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ E IE + + GGL+ + G+R F+P A L+ R V
Sbjct: 81 ILSKRAVQAEKAWETLQAALDSGEVIEAEVADVVKGGLVVDL-GVRGFIP-ASLVERHYV 138
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGT 382
+F++ K GR + +++ ++++ N LILS+R +L+ G ++EGT
Sbjct: 139 EDFSDYK---GRTLRLKVVELDKEANKLILSQRAVLDEEVEAKKKEVLASLQPGDVVEGT 195
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+HIS ++ RV + ++++ EG+ VKV V+ S+ PD +
Sbjct: 196 VQRLTDFGAFVDVGGVD--GLVHISQLAHHRVETPAEVVKEGDAVKVKVL-SVDPDSERV 252
Query: 443 SIADLESEPG 452
S++ E+ PG
Sbjct: 253 SLSIKETLPG 262
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIR 394
K G + V++ ++ D+ + LS +E W + ++ G ++EGTVK++ +GA +
Sbjct: 233 KEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVEGTIQPGDVIEGTVKRLVSFGAFVE 292
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEPGL 453
+ GL+HIS ++ + + ++L+EGERV+ V+ +K ISLSI +L + G
Sbjct: 293 VA-PGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSIRELLDDAGS 351
Query: 454 FVSDKEVH 461
SD+EV+
Sbjct: 352 NQSDREVY 359
>gi|389576809|ref|ZP_10166837.1| ribosomal protein S1 [Eubacterium cellulosolvens 6]
gi|389312294|gb|EIM57227.1| ribosomal protein S1 [Eubacterium cellulosolvens 6]
Length = 235
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 14/172 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W ++++ + P+ V G+++ +EG+R F+P + L + + +L +G+ +
Sbjct: 29 WEKLKEYQTEKTPLTVTVDGVVNKGVISNVEGVRGFIPASRLA--LGHVDDLNAYLGKEI 86
Query: 347 YVQITRINEDTNDLILS---------EREAWATLNLRE-GTLLEGTVKKIYPYGAQIRIG 396
V I ++E+ LILS + E A + E G++++G V+ I YGA I +G
Sbjct: 87 QVVIREVDEEKGRLILSAVELLRAKADEEKKAKIEAIEIGSVMDGKVESIQSYGAFIDLG 146
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
D SGL+HIS +S RV SV D+L G+ VKV V++ + K+SLS+ LE
Sbjct: 147 D-GLSGLVHISQISNKRVKSVEDVLKAGQDVKVKVIR-IKDGKLSLSMKALE 196
>gi|312143877|ref|YP_003995323.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
hydrogeniformans]
gi|311904528|gb|ADQ14969.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
hydrogeniformans]
Length = 768
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS ++ + AW ++ + + +E IE + T+ GGL+ + G+R F+P + +
Sbjct: 448 GNMILSKKQADYEQAWEKIVEAHENDEIIEAEVTKEVKGGLVVNV-GVRGFIPASHVA-- 504
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWA----TLN-LREGTLLEG 381
+ +L + VG + +++ + D N+++LS E+E A TL L EG + G
Sbjct: 505 IGYVDDLSDYVGETLRLKVIEVERDNNNVVLSAKKVLEKERAAQKEETLEALEEGQTVSG 564
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KI 440
V K+ +GA I +G GLLHIS MS R+ S S++L+EGE V+V V+ D +I
Sbjct: 565 KVTKLVDFGAFIDLG--GIEGLLHISEMSWGRIESPSEVLSEGEEVEVKVLGVNKEDERI 622
Query: 441 SLSIADLESEP 451
SL + L +P
Sbjct: 623 SLGLKQLLPDP 633
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 275 LLSTRRLFRK-MAWHRVRQIKQLNEPIEV--KFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
+LS +++ K A + ++ L E V K T+ G + G+ L +E+
Sbjct: 534 VLSAKKVLEKERAAQKEETLEALEEGQTVSGKVTKLVDFGAFIDLGGIEGLLHISEMSWG 593
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----AWATLNLR--EGTLLEGTVK 384
R+ + +E+ + G + V++ +N++ + L ++ W + EG ++EG +
Sbjct: 594 RIESPSEVLSE-GEEVEVKVLGVNKEDERISLGLKQLLPDPWEEFAEKHYEGEVVEGKIT 652
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
KI +GA + + + GL+HIS +S V + ++++ G+ + ++ +++ LS
Sbjct: 653 KIVDFGAFMEV-EKGIEGLIHISQLSHRHVKTADEVVSVGDVKEAKIINIDAEQERVGLS 711
Query: 444 IADLESEP 451
+ +LE +P
Sbjct: 712 LKELEEKP 719
>gi|33239981|ref|NP_874923.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237507|gb|AAP99575.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 417
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V Q+ + + +EVK +N GG+ +EGLR F+P+++L N
Sbjct: 211 ISCRALALRKSWDKVIQLAKEAKVVEVKLNGFNRGGVTCDLEGLRGFIPRSQL----NQG 266
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ + VG+ + V ++ D LILSE++A E G L+EG V + PYG
Sbjct: 267 DDHESLVGKTINVAFIEVSPDNRKLILSEKKAATAAKFAELEVGQLIEGKVISVKPYGFF 326
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
+ +G SGLLH S ++ + S+ ++ N+G+ VK L+
Sbjct: 327 VDLG--GISGLLHQSMITNGSLRSLREVFNQGDNVKALIT 364
>gi|296133096|ref|YP_003640343.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens
JR]
gi|296031674|gb|ADG82442.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens
JR]
Length = 674
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 61/302 (20%)
Query: 172 PGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRG 231
PGD V G VV N++++ V+VG G V+PL + C+ E F V
Sbjct: 297 PGDMVTGTVVQVNDDEVMVDVGGKSEG------VIPLRESS----CCNHNNLKELFTVGD 346
Query: 232 KMGIV----KDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW 287
++ +V +DD+ G+ +LS R+ ++ W
Sbjct: 347 QVKVVVLKAQDDE-------------------------------GKIILSKRKADAELTW 375
Query: 288 HRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMY 347
+ + P+E E GGLL + G++ F+P A L+ R + +L + +G+++
Sbjct: 376 GCLEEAFDSGTPVEGTVREVVKGGLLLDL-GVQGFMP-ASLVER-SYVEDLNQYLGQKLK 432
Query: 348 VQITRINEDTNDLILS-----EREAWA----TL-NLREGTLLEGTVKKIYPYGAQIRIGD 397
+I + D ++LS E EA A TL NL+ G +++GTVK++ +GA + IG
Sbjct: 433 AKIIELRRDARKVVLSRKAILEEEAQAKKAETLRNLQSGQVVKGTVKRLTDFGAFVDIGG 492
Query: 398 SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVS 456
+ GLLH+S M+ RV S+++ EG++++V ++ +K+SLS+ + P V+
Sbjct: 493 ID--GLLHVSEMAWYRVGHPSEVVKEGDQIEVFILDVDKNTEKVSLSLKKVLPNPWDTVA 550
Query: 457 DK 458
+K
Sbjct: 551 EK 552
>gi|152975021|ref|YP_001374538.1| 30S ribosomal protein S1 [Bacillus cytotoxicus NVH 391-98]
gi|152023773|gb|ABS21543.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 382
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 110/197 (55%), Gaps = 20/197 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ E +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGEVFDVTVNDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FTE K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTEYK---GKTLAVKIVELDREKNRVILSHKAVVEQELDSKKKEAISSLKEGEIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
+++ +GA + +G + GL+HIS +S RV SD+L +G++VKV V+ S+ D +IS
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVGQPSDVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 442 LSIADLESEPGLFVSDK 458
LSI P V+D+
Sbjct: 254 LSIKAAAPGPWEHVADE 270
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 23/206 (11%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG----GLLTRIE 317
F E G+TL+ + + R R + H+ ++L+ + + G G + R+
Sbjct: 141 FTEYKGKTLAVKIVELDREKNRVILSHKAVVEQELDSKKKEAISSLKEGEIVEGTVQRLT 200
Query: 318 GLRAF--------LPKAELLS--RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
AF L +S RV +++ E+ G+++ V++ ++ DT + LS + A
Sbjct: 201 DFGAFVNVGGVDGLVHISQISHERVGQPSDVLEQ-GQKVKVKVLSVDADTQRISLSIKAA 259
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W + ++ G + EGTV +I +GA + I GL+H+S ++ V + +++L
Sbjct: 260 APGPWEHVADEIKVGDVREGTVNRIVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVL 318
Query: 422 NEGERVKVLVVKSMFPDK-ISLSIAD 446
G+ VKV V++ +K ISLSI +
Sbjct: 319 EIGQEVKVKVLEVNAAEKRISLSIKE 344
>gi|334119758|ref|ZP_08493843.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333457920|gb|EGK86541.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 299
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 102/188 (54%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + AW + +++ + ++V+ + N GG+ ++G+R F+P++ L+ R
Sbjct: 96 GQVTLSLRQLQIQQAWEDLIDLQETGKVLQVRVSGANKGGVTVDVQGMRGFIPRSHLVER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIYP 388
N L+ +G+ + V ++ + L+LS+R A A +L+ G L+EG V I P
Sbjct: 156 DN----LESLIGQSLSVNFLEVDREREKLVLSQRMATQSNAFKDLQIGQLVEGKVSSIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + SGLLHI +S+ + ++ + G+ +K +V+ +ISLS L
Sbjct: 212 FGVFVDL--EGVSGLLHIKQVSQKYIDNLGKVFAPGQPLKAIVLDLDESRGRISLSTRVL 269
Query: 448 ESEPGLFV 455
E+ PG V
Sbjct: 270 ENYPGEMV 277
>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
Length = 416
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 102/192 (53%), Gaps = 15/192 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
G LLS RRL + AW + + +E T+ GGL+ + G+R F+P + + +
Sbjct: 87 GGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGGLVVDVAGVRGFVPASMIEN 146
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLE 380
R +L + G+ + +I I+ + LILS R EA + + L EG ++E
Sbjct: 147 RF--VQDLNQYKGQTIRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVE 204
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
G V ++ +GA I +G + GL+H+S +S RV+ SD+L G+ VKV ++ + P+K
Sbjct: 205 GKVARMTNFGAFIDLGGVD--GLVHVSEISHDRVSQPSDVLAVGDDVKVKIL-GLDPEKE 261
Query: 441 SLSIADLESEPG 452
+S++ ++PG
Sbjct: 262 RISLSIKATQPG 273
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + R A R+ + +E K G + G+ + +E+
Sbjct: 173 RLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEIS 232
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGT 382
RV+ +++ VG + V+I ++ + + LS + W A N EGT+LEGT
Sbjct: 233 HDRVSQPSDVL-AVGDDVKVKILGLDPEKERISLSIKATQPGPWEAAAENAPEGTVLEGT 291
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--I 440
VK++ +GA + + GL+H+S ++ V + +D+L G++V V V++ + PDK +
Sbjct: 292 VKRVVDFGAFVEVF-PGVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLE-VNPDKQRL 349
Query: 441 SLSIADLESEP 451
SLSI LE P
Sbjct: 350 SLSIKALEEAP 360
>gi|375084639|ref|ZP_09731499.1| ribosomal protein S1 [Megamonas funiformis YIT 11815]
gi|374567886|gb|EHR39084.1| ribosomal protein S1 [Megamonas funiformis YIT 11815]
Length = 377
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 17/189 (8%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R R +AW +V ++K+ + IEV+ + GGLLT GLR F+P +++ ++
Sbjct: 83 ILSKTRADRLVAWEKVEKVKEEKQIIEVEILQVVKGGLLTTAFGLRGFIPASQI--ALHF 140
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTVK 384
+L E VG+++ V+I + L+LS R A ++ EG G VK
Sbjct: 141 VKDLNEFVGQKVEVEIMEADPKKQRLVLSRRSVLEAQREQKREEALASIVEGEKRAGVVK 200
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISL 442
++ YGA I IG + GL HIS++S + + +D+L+ G+ V+VL VK+ P+ +ISL
Sbjct: 201 RLVDYGAFIDIGGVD--GLAHISDLSWDHIKNPADVLSVGQEVEVL-VKAFDPETKRISL 257
Query: 443 SIADLESEP 451
SI D +P
Sbjct: 258 SIKDTVRDP 266
>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
Length = 382
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ E +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEMHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVEQELESKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G N GL+HIS +S RV SD+L +G+ VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVG--NVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ DT + LS + A W ++ ++ G + EG VK+I +GA + I
Sbjct: 235 GQSVKVKVLSVDADTQRISLSIKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEIL 294
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIAD 446
GL+H+S ++ V + +++L G+ VKV V++ +K ISLSI +
Sbjct: 295 -PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKE 344
>gi|347534431|ref|YP_004841101.1| 30S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504487|gb|AEN99169.1| 40S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 405
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL W +++ E I VK T GGL+ +G+R F+P + +
Sbjct: 90 GSYLLSIRRLEALKVWDEIKEKADKGENITVKVTRPVRGGLVVNADGVRGFIPASMITDH 149
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
++L + G + V+I + + N LILS R EA + +L+ G ++EG
Sbjct: 150 F--VSDLNQYKGAELEVKIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEG 207
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DK 439
V ++ +GA + +G + GL+H+S +S V+ SD+L GE VKV V+ ++ P ++
Sbjct: 208 KVARLTNFGAFVDLGGID--GLVHVSEISYDHVSKPSDILKVGEDVKVKVL-AIEPERNR 264
Query: 440 ISLSIADLESEP 451
ISLSI L+ P
Sbjct: 265 ISLSIKQLQPGP 276
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 98/191 (51%), Gaps = 15/191 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS R + RK A ++ ++ + +E K G + G+ + +E+
Sbjct: 175 RLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVDLGGIDGLVHVSEIS 234
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGT 382
V+ +++ KVG + V++ I + N + LS ++ W + + G++L+GT
Sbjct: 235 YDHVSKPSDIL-KVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDDIEEKAAVGSILDGT 293
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
VK++ +GA + + GL+HIS +S + SD+L GE+++V V+ S+ P+ ++
Sbjct: 294 VKRLVDFGAFVEVL-PGVEGLVHISQISHKHIDKPSDVLKSGEKIQVKVL-SIDPEEHRL 351
Query: 441 SLSIADLESEP 451
+LS+ LE P
Sbjct: 352 ALSMKALEEAP 362
>gi|295691411|ref|YP_003595104.1| 30S ribosomal protein S1 [Caulobacter segnis ATCC 21756]
gi|295433314|gb|ADG12486.1| ribosomal protein S1 [Caulobacter segnis ATCC 21756]
Length = 569
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 22/216 (10%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
G+P V+ G + F E L + G ++S + R+ AW R+ + NEP+
Sbjct: 68 GKPTVKAGDTVEVFLERLENAM-GEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRV 126
Query: 309 TGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GG + G AFLP +++ R V + L +G+ I +++ ++++S R
Sbjct: 127 KGGFTVDLGGASAFLPGSQVDIRPVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAI 183
Query: 366 --EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA A L+EG + EG VK I YGA + +G + GLLH+++MS RV
Sbjct: 184 LEEARAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVNHP 241
Query: 418 SDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
S +L G+ VKV +VK + PD +ISL + L+S+P
Sbjct: 242 SQVLAVGDTVKVQIVK-INPDTQRISLGMKQLQSDP 276
>gi|320451423|ref|YP_004203519.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
gi|320151592|gb|ADW22970.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
Length = 539
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 21/202 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G+ LLS +R+ W R+R++ + EP+ V E GG++ ++G+ AF+P ++L L
Sbjct: 102 TGQVLLSRKRVEATEHWDRIRELYEKGEPVTVTVKEKVKGGVVADLDGVSAFIPASQLDL 161
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-----------EAWATLNLREGTL 378
R+ N L VG+++ V+I N ++LS R EA+ +L+ G +
Sbjct: 162 KRIPN---LDAYVGQQILVKIIEFNRKKGRVLLSRRAVLEEEQKRAKEAFFQ-SLQPGQV 217
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EGTV + +GA + +G + GL+H S ++ R +++++G++V+ VV S+ P+
Sbjct: 218 VEGTVVDVTDFGAFVNLGPVD--GLVHRSEITWGRFNHPKEVIHKGQKVRAQVV-SVDPE 274
Query: 439 K--ISLSIADLESEPGLFVSDK 458
K ++LSI L +P V++K
Sbjct: 275 KERVNLSIKALIPDPWTTVAEK 296
>gi|424866581|ref|ZP_18290414.1| Ribosomal protein S1 [Leptospirillum sp. Group II 'C75']
gi|387222759|gb|EIJ77174.1| Ribosomal protein S1 [Leptospirillum sp. Group II 'C75']
Length = 591
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
++G +LS + R W + + ++ IE + GG+ + GL+AFLP +++
Sbjct: 103 VNGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFLPGSQID 161
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAW------ATLN-LREGTL 378
L V + L +G+ + V+I ++N+ ++I+S R E W T++ L+EG +
Sbjct: 162 LRPVRDMDRL---IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEI 218
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
LEG VK I YGA I +G + GLLHI++MS RVT+ + +N G++V V+V+K
Sbjct: 219 LEGIVKNITDYGAFIDLGGID--GLLHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKET 276
Query: 438 DKISLSIADLESEP 451
++SL + L +P
Sbjct: 277 GRVSLGLKQLTPDP 290
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + VQ+ +I+E + L ++ W + + G ++ G +K + +GA + +
Sbjct: 348 VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVEGKYPVGAVVSGKIKSLTDFGAFVGL 407
Query: 396 GDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK 433
D GL+HIS+MS T+ V S++ +G++V+V+V+K
Sbjct: 408 -DEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLK 445
>gi|336434975|ref|ZP_08614693.1| hypothetical protein HMPREF0988_00278 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001868|gb|EGN31995.1| hypothetical protein HMPREF0988_00278 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 231
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 98/171 (57%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+RV + + N + VK GG++ +EGLR F+P ++L ++ +L+ + + +
Sbjct: 33 WNRVTEYMEKNTILPVKVEGVVNGGVIVMVEGLRGFVPASKL--SLSYIEDLETYLLKEI 90
Query: 347 YVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIG 396
V++ +++ N L+LS RE +++ GT++ GTV+ + YGA +++
Sbjct: 91 EVRVIDVDQANNRLVLSAREILKEREKEERERQIASVKVGTVMSGTVETLQNYGAFVKL- 149
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
++ SGL+H+S +SR RV SD+LN G+ V+V V+ + KISLS+ L
Sbjct: 150 ENGLSGLVHVSQISRQRVKFPSDVLNVGDEVQVKVI-GIKDGKISLSMKAL 199
>gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG']
Length = 591
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
++G +LS + R W + + ++ IE + GG+ + GL+AFLP +++
Sbjct: 103 VNGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFLPGSQID 161
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAW------ATLN-LREGTL 378
L V + L +G+ + V+I ++N+ ++I+S R E W T++ L+EG +
Sbjct: 162 LRPVRDMDRL---IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEI 218
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
LEG VK I YGA I +G + GLLHI++MS RVT+ + +N G++V V+V+K
Sbjct: 219 LEGIVKNITDYGAFIDLGGID--GLLHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKET 276
Query: 438 DKISLSIADLESEP 451
++SL + L +P
Sbjct: 277 GRVSLGLKQLTPDP 290
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + VQ+ +I+E + L ++ W + + G ++ G +K + +GA + +
Sbjct: 348 VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVETKYPVGAVVSGKIKSLTDFGAFVGL 407
Query: 396 GDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK 433
D GL+HIS+MS T+ V S++ +G++V+V+V+K
Sbjct: 408 -DEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLK 445
>gi|90994536|ref|YP_537026.1| 30S ribosomal protein S1 [Pyropia yezoensis]
gi|90819100|dbj|BAE92469.1| 30S ribosomal protein S1 [Pyropia yezoensis]
Length = 227
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 9/143 (6%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + + V +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHL-- 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
NF + ++ + + +++ + E +N+LILS R A A+ NL G ++EG + +I
Sbjct: 146 --GNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQIT 203
Query: 388 PYGAQIRIGDSNRSGLLHISNMS 410
PYG I++G N GL+HIS ++
Sbjct: 204 PYGLFIKVG--NLKGLVHISEIN 224
>gi|402299919|ref|ZP_10819481.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
gi|401724905|gb|EJS98228.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
Length = 383
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 105/185 (56%), Gaps = 20/185 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ + E IE + GGL+ + G+R F+P A L+ R V
Sbjct: 81 VLSKRAVQAEKAWVSLQNSFETGEVIETIIADVVKGGLVVDL-GVRGFIP-ASLVERHYV 138
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F++ K G+ + +++ +++D N LILS+R + + G ++EGT
Sbjct: 139 EDFSDYK---GKTLRLKVVELDKDNNKLILSQRVVLDEEVEKQKKHLLQGIEPGMVIEGT 195
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +GA + +G + GL+HIS ++ RV S SD+++EG++VKV V+ +++S
Sbjct: 196 VQRLTNFGAFVDLGGVD--GLVHISQLAHHRVESPSDVVSEGDKVKVKVLSVDTESERVS 253
Query: 442 LSIAD 446
LSI D
Sbjct: 254 LSIKD 258
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 109/222 (49%), Gaps = 24/222 (10%)
Query: 262 FAEVLGRTL----------SGRPLLSTRRLFRKMAWHRVRQIKQLNEP---IEVKFTEWN 308
F++ G+TL + + +LS R + + + + + Q EP IE
Sbjct: 141 FSDYKGKTLRLKVVELDKDNNKLILSQRVVLDEEVEKQKKHLLQGIEPGMVIEGTVQRLT 200
Query: 309 TGGLLTRIEGLRAFLPKAELLS-RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G + G+ + ++L RV + +++ + G ++ V++ ++ ++ + LS ++
Sbjct: 201 NFGAFVDLGGVDGLVHISQLAHHRVESPSDVVSE-GDKVKVKVLSVDTESERVSLSIKDT 259
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W + + +G ++ GTVK++ +GA I + D GL+HIS ++ + + S++L
Sbjct: 260 LPGPWEKIEGTISQGDVVSGTVKRLVSFGAFIEVAD-GVEGLVHISQIANRHIGTPSEVL 318
Query: 422 NEGERVKVLVVKSMFPDK-ISLSI-ADLESEPGLFVSDKEVH 461
EGE+V+ V+ +K ISLSI A +E + +D E H
Sbjct: 319 TEGEKVQAKVLDVNLDEKRISLSIRALIEEDVEDHYADYESH 360
>gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group]
Length = 217
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 9/149 (6%)
Query: 307 WNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366
N GG++ +EGL+ F+P S+V++ + +E + + + ++ ++E+ L+LS R+
Sbjct: 3 GNKGGVVALVEGLKGFVP----FSQVSSKSTAEELLDKELPLKFVEVDEEQGRLVLSNRK 58
Query: 367 AWA--TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
A A L G+++ GTV+ + PYGA I IG N GLLH+S +S RV +S +L G
Sbjct: 59 AMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGIN--GLLHVSQISHDRVADISTVLQPG 116
Query: 425 ERVKVLVVK-SMFPDKISLSIADLESEPG 452
+ +KV+++ ++SLS LE PG
Sbjct: 117 DTLKVMILSHDRERGRVSLSTKKLEPTPG 145
>gi|410478645|ref|YP_006766282.1| 30S ribosomal protein S1 [Leptospirillum ferriphilum ML-04]
gi|406773897|gb|AFS53322.1| ribosomal protein S1 [Leptospirillum ferriphilum ML-04]
Length = 591
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 109/201 (54%), Gaps = 18/201 (8%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
++G +LS + R W + + ++ IE + GG+ + GL+AFLP +++
Sbjct: 103 VNGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFLPGSQID 161
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAW------ATLN-LREGTL 378
L V + L +G+ + V+I ++N+ ++I+S R E W T++ L+EG +
Sbjct: 162 LRPVRDMDRL---IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEV 218
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
LEG VK I YGA I +G + GLLHI++MS RVT+ + +N G++V V+V+K
Sbjct: 219 LEGIVKNITDYGAFIDLGGID--GLLHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKET 276
Query: 438 DKISLSIADLESEPGLFVSDK 458
++SL + L +P V +
Sbjct: 277 GRVSLGLKQLTPDPWTTVGSR 297
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + VQ+ +I+E + L ++ W + + G ++ G +K + +GA + +
Sbjct: 348 VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVEGKYPVGAVVSGKIKSLTDFGAFVGL 407
Query: 396 GDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK 433
D GL+HIS+MS T+ V S++ +G++V V+V+K
Sbjct: 408 -DEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVDVVVLK 445
>gi|258515332|ref|YP_003191554.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum acetoxidans DSM 771]
gi|257779037|gb|ACV62931.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
acetoxidans DSM 771]
Length = 676
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR LS R + AW ++ + + +E IE E GGLL + G+RAFLP A L+ +
Sbjct: 374 GRIKLSKTRADAENAWAKLESLLESSEKIEGTVREVVKGGLLVDV-GVRAFLP-ASLVDK 431
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWAT-----LN-LREGTLLEG 381
+L + VG + Q+ IN ++LS + E +A LN L+EG + G
Sbjct: 432 -GYVEDLSKYVGENITAQVIEINRIRRKVVLSRKAILEEEYANRKEELLNSLQEGQTVSG 490
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V++I +GA + IG + GLLHIS M+ RVT S+++ G+ V V+V+K DKI
Sbjct: 491 IVRRITNFGAFVDIGGVD--GLLHISEMAWYRVTHPSEIVQVGDEVTVMVLKIDRNADKI 548
Query: 441 SLSIADLESEP 451
SL + + + P
Sbjct: 549 SLGLKQVLANP 559
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G I G+ L +E+ RV + +E+ + VG + V + +I+ + + + L ++
Sbjct: 499 GAFVDIGGVDGLLHISEMAWYRVTHPSEIVQ-VGDEVTVMVLKIDRNADKISLGLKQVLA 557
Query: 368 --WATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W ++ + G ++ V ++ P+GA +++ + GL+HIS+++ V D+++E
Sbjct: 558 NPWENVDSKYPVGAIVAAKVVRLAPFGAFVQL-EPGVEGLVHISHLADHHVEKPEDVVSE 616
Query: 424 GERVKVLVVKSMFPDK-ISLSIADL 447
GE V V V+ +K I LSI ++
Sbjct: 617 GEEVNVKVLSVDTQEKRIRLSIKEV 641
>gi|392989866|ref|YP_006488459.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
gi|392337286|gb|AFM71568.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
Length = 410
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 20/189 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + Q IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEDIEKDFQAGNIIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLL 379
V +F+E K G + +I I N LILS + T N+ EG ++
Sbjct: 152 HFVADFSEYK---GETLAFKIVEIEPSENRLILSHKAVVETEKEEKKKEILANIHEGDVI 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-- 437
+G V +I +GA + +G + GL+H+S +S + V SD L G+ VKV V+ S+ P
Sbjct: 209 DGRVARITDFGAFVDLGGID--GLVHVSEISHSHVAKPSDALAVGDEVKVKVL-SINPEQ 265
Query: 438 DKISLSIAD 446
+++SLSI D
Sbjct: 266 ERVSLSIKD 274
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V++ IN + + LS ++ W + + G++L+G VK++ +GA + +
Sbjct: 250 VGDEVKVKVLSINPEQERVSLSIKDTLPGPWTDIEEKATVGSVLDGKVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
GL+HIS +S + + ++L+EG+ V+V V++ + P+ +I+LSI LE +P
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDEVQVKVLE-VHPEEHRIALSIKALEEKPA 366
>gi|119485419|ref|ZP_01619747.1| RNA binding S1 [Lyngbya sp. PCC 8106]
gi|119457175|gb|EAW38301.1| RNA binding S1 [Lyngbya sp. PCC 8106]
Length = 295
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LLS R+L + W R+ + +Q + +V+ T N GG+ + LR F+P++ L +
Sbjct: 90 GQVLLSIRQLELEKVWDRLNESQQQAQSFQVRVTGMNRGGVTVDFDSLRGFIPRSHLSEK 149
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+L + + + V I ++ D N L+ S+R A +++ L G L+EG V + P
Sbjct: 150 ----EDLNSLIDQLLTVHILELDRDRNKLVFSQRLASESVSFGQLEVGQLIEGKVSSVKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + +GL+HI +S+ + S+ L G+ VK LV+ ++SLS L
Sbjct: 206 FGVFVDL--DGVTGLIHIKEVSQKYIESLPTLFPVGQAVKALVIDLEEGRRRVSLSTRLL 263
Query: 448 ESEPGLFV 455
E+ PG V
Sbjct: 264 ENYPGEIV 271
>gi|354582632|ref|ZP_09001533.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
gi|353198924|gb|EHB64390.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
Length = 407
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW + + + + EV + GGL+ + G R F+P A ++ R V
Sbjct: 93 VLSKRAIDAENAWDELEKHFEAQDVFEVTVADVVKGGLVADV-GARGFIP-ASMVERHFV 150
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGT 382
+F++ K GR + V++ ++ + N +ILS+++ L+EG +LEGT
Sbjct: 151 EDFSDYK---GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMAELKEGQVLEGT 207
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ V SD+L+EG++V+V V+K + P+K +
Sbjct: 208 VQRLTQFGAFVDVGGVD--GLVHVSEIAWNHVDKPSDVLSEGDQVRVKVLK-VDPEKGKI 264
Query: 443 SIADLESEPG 452
S++ + PG
Sbjct: 265 SLSIKAAGPG 274
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W T G ++ G VK++ +GA + +
Sbjct: 247 GDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFGAFVELA 306
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEPG 452
GL+HIS +S + + ++L EG+ V+V V+ + P ++SLSI + E P
Sbjct: 307 -PGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVL-DINPSEQRVSLSIKETEEAPA 362
>gi|428206841|ref|YP_007091194.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428008762|gb|AFY87325.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 300
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W R+ Q+++ + ++V+ T N GG+ + GLR F+P++ L+ +
Sbjct: 95 GQVTLSRRQLEIQHIWERIEQMQENRQTVQVRVTGANKGGVTVDVLGLRGFIPRSHLVEK 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYP 388
N LK G+ + ++ D L+LS R A + L G L G V I P
Sbjct: 155 -ENMESLK---GQNLTASFLEVDYDNKKLVLSNRLATRASSFSQLEIGQLATGKVSSIQP 210
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + SGLLHI +S+ S+ L G+ +K +++ +ISLS L
Sbjct: 211 FGVFVDL--NGVSGLLHIKQVSQNYTASLPALFKIGQEIKAVIIDLDEGRGRISLSTKVL 268
Query: 448 ESEPG 452
E+ PG
Sbjct: 269 ENYPG 273
>gi|406980774|gb|EKE02336.1| hypothetical protein ACD_20C00399G0021 [uncultured bacterium]
Length = 369
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS +R+ + +W + Q++Q E IE K GG+L ++ GLR F+P ++L +
Sbjct: 94 GQLTLSLKRVSQARSWTELEQLRQNEETIETKVISLVKGGVLVKVLGLRGFIPSSQLRTG 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA----------TLNLREGTLLEG 381
T + +G+ + +I + N LILS+R A A +L L+EG
Sbjct: 154 ----TPHEGLIGQDIPAKILEADPKRNKLILSQRLALAEEREKVVENVIASLHVDQLVEG 209
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V +I +GA I I + GLL IS MS RV SD+L+ G+ V+V V+K ++I
Sbjct: 210 EVVRIADFGAFIDINGID--GLLPISEMSWQRVKHPSDILSLGQHVQVKVLKIDTELNRI 267
Query: 441 SLSIADLESEP 451
SLS+ +E P
Sbjct: 268 SLSLKRMEENP 278
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G+ LP +E+ RV + +++ +G+ + V++ +I+ + N + LS E
Sbjct: 218 GAFIDINGIDGLLPISEMSWQRVKHPSDIL-SLGQHVQVKVLKIDTELNRISLSLKRMEE 276
Query: 366 EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + EG +++G V KI +GA I I LL + MS + + + L
Sbjct: 277 NPWVKIEGQFEEGQVVKGIVNKITNFGAFIDIF-PGVEALLPAAEMSDEQNINPFNELTV 335
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESE 450
G+ ++VL +K P +I LSI DL S+
Sbjct: 336 GQEIEVL-IKRFTPQEHRIGLSIRDLNSQ 363
>gi|333370713|ref|ZP_08462697.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
Length = 391
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 110/191 (57%), Gaps = 22/191 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS + + AW ++Q + E +E + + GGL+ + G+R F+P A L+ R V
Sbjct: 92 VLSKKAVDADRAWEELQQKFESGETLEAEVADVVKGGLVVDL-GVRGFIP-ASLVERHYV 149
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLEGT 382
+F++ K GR++ +++ I+ N LILS +R+ L+ G ++EGT
Sbjct: 150 EDFSDYK---GRKLSLKVIEIDPVKNKLILSRKAVLDEEADQRKQETLAGLQPGQVMEGT 206
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +GA + IG + GL+H+S ++ RV S++L+EG++V+V V+K ++IS
Sbjct: 207 VQRLTDFGAFVDIGGVD--GLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQNERIS 264
Query: 442 LSIADLESEPG 452
LSI E++PG
Sbjct: 265 LSIK--ETQPG 273
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 12/143 (8%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G I G+ + +EL +RV + +E+ + G ++ V++ ++++ + LS +E
Sbjct: 214 GAFVDIGGVDGLVHVSELAWNRVEHPSEVLSE-GDQVQVKVLKVDQQNERISLSIKETQP 272
Query: 368 --WATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W ++ ++ G ++ GTVK++ +GA + + GL+HIS +SR + + S+ L E
Sbjct: 273 GPWEKVSEEIKAGDIVTGTVKRLVSFGAFVEVY-QGVEGLVHISQISRRHIATPSEELEE 331
Query: 424 GERVKVLVVKSMFPD--KISLSI 444
G+ V+V V+ M P+ +ISLSI
Sbjct: 332 GQEVRVKVL-DMQPEQKRISLSI 353
>gi|333979263|ref|YP_004517208.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822744|gb|AEG15407.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 739
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 59/304 (19%)
Query: 162 KVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLK 221
K +VE +PG V GVVV +++ V+VGA G ++PL + L C
Sbjct: 362 KEAVEVKSLRPGQIVKGVVVQVGTDEVLVDVGAKSEG------IIPLRE-----LSC--- 407
Query: 222 KDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281
+ V +VK D I ++ V+ AE GR +LS R
Sbjct: 408 -----YNVSSPAEVVKVGDEIEVA--------------VIKAE----DNEGRLILSKERA 444
Query: 282 FRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEK 341
+ AW ++ + + EP+E E GGLL + GLRAFLP A L+ R +L +
Sbjct: 445 DAERAWVKLNEHLESGEPVEGTVREVVKGGLLVDV-GLRAFLP-ASLVER-GYVEDLSKY 501
Query: 342 VGRRMYVQITRINEDTNDLILSEREAWATL-------------NLREGTLLEGTVKKIYP 388
VG + ++ +N +ILS + A L +L+EG ++ G V+++
Sbjct: 502 VGETVRAKVIELNRGRRKVILSRK---AVLEEDAVRKRREMLESLQEGQVVRGVVRRLTS 558
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+GA + IG + GLLHIS M+ RV S+++N G+ + V+V++ +KISL + +
Sbjct: 559 FGAFVDIGGVD--GLLHISEMAWYRVNHPSEVVNVGDEIDVMVLRVDRENEKISLGLRQV 616
Query: 448 ESEP 451
P
Sbjct: 617 LPNP 620
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G I G+ L +E+ RVN+ +E+ VG + V + R++ + + L R+
Sbjct: 560 GAFVDIGGVDGLLHISEMAWYRVNHPSEVV-NVGDEIDVMVLRVDRENEKISLGLRQVLP 618
Query: 368 --WATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + + G+++ V ++ P+GA +++ + GL+HIS+++ V + +++ E
Sbjct: 619 NPWDNVEEKYPVGSIVRAKVVRLAPFGAFVQL-EPGVEGLVHISHLADRHVATPDEVVQE 677
Query: 424 GERVKVLVVKSMFPDK-ISLSI 444
G+ V+V V+ +K I LSI
Sbjct: 678 GDEVEVKVLNVDRAEKRIRLSI 699
>gi|434402430|ref|YP_007145315.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428256685|gb|AFZ22635.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 300
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++++ ++ ++V+ N GG+ + LR F+P++ L R
Sbjct: 96 GQVTLSRKQLEIQHIWDRLLEMQENSQTVQVRVMGVNKGGVTVDLLSLRGFIPRSHLQER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N LK G+ + V IN +TN LILS+R A + N L G L+EG + I P
Sbjct: 156 -DNLEALK---GQTLNVGFLEINRNTNKLILSQRLATRSSNFSLLELGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + S LLHI +S+ + S+ + G+++K +++ +++LS L
Sbjct: 212 FGVFVDL--DGMSALLHIKQVSQKFIESLEKVFQNGQKIKAVIIDLDEGKGRVALSTRIL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|325283658|ref|YP_004256199.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
gi|324315467|gb|ADY26582.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
Length = 610
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 53/306 (17%)
Query: 160 EDKVSVEYYEPKP---GDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFL 216
ED ++ E EP+ GD V G VV + V++GA + G ++PL
Sbjct: 55 EDVLASEAQEPQNVNRGDIVDGTVVFIGSEGIAVDIGAKVEG------IVPLTQ------ 102
Query: 217 LCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLL 276
L D AEE + K G D+I T V T +G+ +L
Sbjct: 103 LGDEPMTAEEAQAQYKPG-----DSI----------------TTYVVRV--DTNTGQIVL 139
Query: 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFT 336
S +R + W + ++++ + EV+ E GGL+ ++EG+RAFLP +++ +R N
Sbjct: 140 SKKRADQNKGWRVLEKMQEEGQTFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN-- 197
Query: 337 ELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTVKKI 386
+L VG+ + VQ+ +N N +I+S R + +L G EGTV +I
Sbjct: 198 DLDPYVGKPLQVQLIELNRKRNRVIISHRSILDAQKEQAKQETMTHLESGAEFEGTVVEI 257
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIA 445
+G + +G + GL+H S ++ R +++ G++VKV V+ ++I+LS+
Sbjct: 258 TDFGVFVNLGGID--GLVHRSELTYGRFNHPREVVAVGDKVKVQVIDVDESRERINLSMK 315
Query: 446 DLESEP 451
L ++P
Sbjct: 316 SLTNDP 321
>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
Length = 493
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW V +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS RE
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EGT+ I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQVREGTISSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|406905815|gb|EKD47166.1| RNA binding S1 protein [uncultured bacterium]
Length = 408
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 24/211 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL- 329
+G LS R K +W +++ Q NE +EVK T+ N GGL+ ++ + FLP ++L
Sbjct: 84 NGEMELSFRFAGNKKSWEDLKEQFQKNEVVEVKVTDANKGGLIVKLNHITGFLPVSQLAP 143
Query: 330 ---------SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLR 374
+V +LK+ +G ++ V I +N + LI+SE+ W +
Sbjct: 144 ENYPRVSGGDKVKILEKLKDFIGNKVRVHILDLNTEEEKLIVSEKTIWEDEQKNVISKIA 203
Query: 375 EGTLLEGTVKKIYPYGAQIRI---GDSNRS----GLLHISNMSRTRVTSVSDLLNEGERV 427
G ++EG + + +GA ++ G ++ + GL+HIS ++ R+ DLL G+ V
Sbjct: 204 IGDIIEGDITALADFGAFVKFLPKGVTDPAGALEGLVHISEIAWQRIDHPKDLLKTGQTV 263
Query: 428 KVLVVKSMFPDKISLSIADLESEPGLFVSDK 458
K ++ + KI LS+ L+S+P + V +K
Sbjct: 264 KAEII-GIDGSKIFLSMKKLKSDPWVDVENK 293
>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
Length = 420
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ + E IE K + GGL+ + GLR F+P A ++ R V
Sbjct: 109 ILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVKGGLVIDV-GLRGFVP-ASMVERHFV 166
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---------WATLNLRE-GTLLEGT 382
+F++ K GR + +++ ++ + N +ILS+++ LN E G +EGT
Sbjct: 167 EDFSDYK---GRTLRMKVKELDREKNKVILSQKDVLDEEYNAKKQEILNSIEIGQEIEGT 223
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ P+G + IG + GL+HIS M+ V S+L+ EG++VKV V+K + P+ +
Sbjct: 224 VQRLTPFGVFVDIGGID--GLVHISEMAWHHVEEASELVKEGDKVKVQVLK-VDPENERI 280
Query: 443 SIADLESEPG 452
S++ ++PG
Sbjct: 281 SLSMKAAQPG 290
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 12/150 (8%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G+ I G+ + +E+ V +EL K G ++ VQ+ +++ + + LS + A
Sbjct: 231 GVFVDIGGIDGLVHISEMAWHHVEEASELV-KEGDKVKVQVLKVDPENERISLSMKAAQP 289
Query: 368 --WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W L +++ G ++ GTVK++ +GA + I GL+HIS +S + + ++L E
Sbjct: 290 GPWEQLGDHIQVGAVVSGTVKRLVNFGAFVEIA-PGVEGLVHISQISHRHIGTPHEVLEE 348
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESEP 451
G+ V+V ++ + P ++SLSI + E P
Sbjct: 349 GQEVQVKIL-DLNPQEKRVSLSIKETEEAP 377
>gi|365875510|ref|ZP_09415038.1| 30S ribosomal protein S1 [Elizabethkingia anophelis Ag1]
gi|442588775|ref|ZP_21007585.1| 30S ribosomal protein S1 [Elizabethkingia anophelis R26]
gi|365756769|gb|EHM98680.1| 30S ribosomal protein S1 [Elizabethkingia anophelis Ag1]
gi|442561533|gb|ELR78758.1| 30S ribosomal protein S1 [Elizabethkingia anophelis R26]
Length = 594
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG+ LS ++ AW +V + + E + GG++ + G+ AFLP +++
Sbjct: 110 SGQLQLSHKKARTLRAWDKVNEYHESGEIVNGFVKSRTKGGMIVDVFGIEAFLPGSQI-- 167
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLE 380
V + + VG+ M +I +IN + ++++S + + L +G +LE
Sbjct: 168 DVKPIKDYDQFVGKTMEFKIVKINHEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLE 227
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
GTVK I YG I +G + GL+HI+++S +RV S++L +G+ VKV+++ F D
Sbjct: 228 GTVKNITSYGVFIDLGGVD--GLIHITDLSWSRVNHPSEILEDGQTVKVVILD--FDDEK 283
Query: 439 -KISLSIADLESEP 451
+I L + LE+ P
Sbjct: 284 TRIQLGMKQLEAHP 297
>gi|373107011|ref|ZP_09521311.1| hypothetical protein HMPREF9623_00975 [Stomatobaculum longum]
gi|371651950|gb|EHO17376.1| hypothetical protein HMPREF9623_00975 [Stomatobaculum longum]
Length = 237
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 16/175 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W ++ + + E +VK E GG + +E RAF+P ++L S + +L++ + +
Sbjct: 31 WEHLQSLVESKEQFDVKIIEAVKGGCIAYLEDTRAFIPASQLSS--SYVEKLEDYANKHI 88
Query: 347 YVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V + + + L+LS R +A L+ G +L+G V+ + YGA I +G
Sbjct: 89 TVVVITADPEKKRLVLSHRAIEQEEKEKEKAARLAELKVGDVLDGKVESLKDYGAFIDLG 148
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451
+ +GLLH+S +SR RV + +D+L EG+ VKV ++K + KISLS+ LE EP
Sbjct: 149 GA--TGLLHVSQISRKRVKTPADVLKEGQEVKVKIIK-IGDGKISLSMRALE-EP 199
>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
Length = 494
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A V+ + GR +LS +R + AW V +IK+ + +E E GGL
Sbjct: 79 VVQVGDTIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIETVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+R+ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLAPYIGQRIQAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EGT+ I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGTISSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKSTQEDP 283
>gi|423349119|ref|ZP_17326775.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
gi|393703348|gb|EJD65549.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
Length = 493
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW V +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS RE
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EGT+ + +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQVREGTISSLVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKSTQEDP 283
>gi|383761456|ref|YP_005440438.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381724|dbj|BAL98540.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 414
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV--- 332
LS R + W R + Q E E +N GG++ R+ +R F+P ++L+S
Sbjct: 91 LSISRALAEKDWERAEALMQSQEIFECPVDAYNRGGVIVRLGQVRGFVPASQLVSAPAST 150
Query: 333 ------NNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLN-------LREG 376
N + L +G ++ +++ I+ N LILSER A W L+EG
Sbjct: 151 GEEDADNRYASL---MGEKLKLKVIDIDRKRNRLILSERLAMREWRRQQKEQLLDTLQEG 207
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SM 435
+LEG + I +GA + +G ++ GL+H+S +S RVT S+++N G+RV V ++
Sbjct: 208 AVLEGVISSIADFGAFVDLGGAD--GLIHLSELSWNRVTHPSEVVNIGDRVNVQIISIDN 265
Query: 436 FPDKISLSIADLESEP 451
+I LS+ L +P
Sbjct: 266 ERRRIGLSLRRLTPQP 281
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATLN--LREGTLLEGTV 383
+RV + +E+ +G R+ VQI I+ + + LS R + W ++ + G +++G +
Sbjct: 241 NRVTHPSEVV-NIGDRVNVQIISIDNERRRIGLSLRRLTPQPWEVIDNTYQVGQIVKGRI 299
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--IS 441
K+ +GA R+ D+ GL+HIS ++ RVT ++++EGE + +++ + DK +
Sbjct: 300 TKLVNFGAFARLVDTGIEGLIHISELADRRVTHPKEVVSEGEVYDLRIIR-IEGDKRRLG 358
Query: 442 LSIADLESEP 451
LS+ + EP
Sbjct: 359 LSLKQAQPEP 368
>gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
Length = 419
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 19/177 (10%)
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVG 343
+++W + + + E I+ + GGLL +EGLRAF+P + + ++ +L + VG
Sbjct: 125 ELSWTGIIEKFENGELIQATVSGQTKGGLLADVEGLRAFIPGSYIDTKFRK--DLSKFVG 182
Query: 344 RRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLEGTVKKIYPYGA 391
+I +++ N +IL+ R E + +N EG ++EG V +I +GA
Sbjct: 183 NEYTFKIEEVDKSKNKIILNRRVILEEEKAKKLAEVYGNIN--EGDVIEGKVSRITDFGA 240
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+ IG+ + GLLHIS +S RV VSD+++ G+ VKV V+ +KISLS L
Sbjct: 241 FVNIGEVD--GLLHISEISHARVEKVSDVISVGDTVKVAVIAVDKENEKISLSAKTL 295
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG + V + ++++ + LS + W A ++ G +LEG V+ +GA + +
Sbjct: 270 VGDTVKVAVIAVDKENEKISLSAKTLLPTQWEVARATIKAGDVLEGVVRNTTAFGAFVEV 329
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF-PDKISLSIADLESEP 451
GL+HIS +S RVT+V D+L +G++V V V++ F +++SLSI +L +P
Sbjct: 330 L-PEVEGLVHISQISHDRVTNVEDVLKKGDKVTVKVLEFDFESERLSLSIKELLEKP 385
>gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745]
gi|421894040|ref|ZP_16324532.1| 30S ribosomal protein S1 homolog [Pediococcus pentosaceus IE-3]
gi|116102991|gb|ABJ68134.1| SSU ribosomal protein S1P [Pediococcus pentosaceus ATCC 25745]
gi|385273201|emb|CCG89904.1| 30S ribosomal protein S1 homolog [Pediococcus pentosaceus IE-3]
Length = 402
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +RL + W + + NE ++V T+ GGL+ G+R F+P + + +R
Sbjct: 92 GSYLLSRKRLLARKVWKEIEEKAANNEELDVPVTQVVKGGLVVDA-GVRGFIPASMIENR 150
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAW---ATLNLREGTLLE 380
V++ K G+ + V+I + + N LILS EREA +++EG ++
Sbjct: 151 FVDDLNAYK---GQTLKVKIIEVKPEDNRLILSHKAVLNAEREAKRGEVLASIKEGDVVT 207
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
G V ++ +GA + +G + GL+HIS +S RV SD+L GE V+V V+ S+ +K
Sbjct: 208 GKVARLTNFGAFVDLGGID--GLVHISEISYQRVDKPSDVLKAGEEVQVKVL-SVDAEKE 264
Query: 441 SLSIADLESEPG 452
+S++ +++PG
Sbjct: 265 RVSLSIKQTQPG 276
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIR 394
K G + V++ ++ + + LS ++ W + N EG +L+G VK++ +GA +
Sbjct: 247 KAGEEVQVKVLSVDAEKERVSLSIKQTQPGPWDNIEENAPEGAVLDGKVKRLTDFGAFVE 306
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
+ GL+HIS +S + + +D+L EG+ +KV V++ + P +++LSI LE P
Sbjct: 307 VF-PGVEGLVHISQISHKHIATPADVLKEGQDIKVKVLE-VHPAEHRLALSIKALEEAP 363
>gi|325262655|ref|ZP_08129392.1| 40S ribosomal protein S1 [Clostridium sp. D5]
gi|324032487|gb|EGB93765.1| 40S ribosomal protein S1 [Clostridium sp. D5]
Length = 231
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 14/172 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+RV + + VK GG + +EGLR F+P ++L ++ +L+ + + +
Sbjct: 33 WNRVMDYMEKKTILPVKVEGVVNGGAIAMVEGLRGFIPASKL--SLSYIEDLETYLLKDI 90
Query: 347 YVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V++ +++ N L+LS RE A +++ GT++EGTV+ + YGA I++
Sbjct: 91 EVRVIDVDQANNRLVLSAREILKEKEQQARAEQIASIKTGTVMEGTVETLQNYGAFIKL- 149
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
D+ SGL+HIS +S+ R+ + ++L G+ VKV V+ + KISLS+ LE
Sbjct: 150 DNGLSGLVHISQISQKRIKTPGEVLKVGDTVKVKVI-GIKEGKISLSMKALE 200
>gi|94971687|ref|YP_593735.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
Ellin345]
gi|94553737|gb|ABF43661.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
Ellin345]
Length = 609
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 17/204 (8%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G T G LS ++ R AW + + I+ + + GGL I G RAFLP +
Sbjct: 127 GHTEEGYVHLSHQKAQRLKAWDEIEKAYNDKSSIKARAIDRIKGGLTVDIMGARAFLPGS 186
Query: 327 EL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLRE 375
++ L V N LK G + V+I ++N+ ++++S ++++ +L E
Sbjct: 187 QVDLRPVRNLDALK---GHELEVRIIKLNKKRGNIVVSRKQILEEEQNDKKSKTLEHLNE 243
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
+L GTVK + YGA + +G + GLLHI++MS R+T DL+ G++++V V+K
Sbjct: 244 DAVLTGTVKNLTDYGAFVDLGGID--GLLHITDMSWGRLTHPRDLVQVGDQIQVKVLKFD 301
Query: 435 MFPDKISLSIADLESEPGLFVSDK 458
++SL L +P L S++
Sbjct: 302 RDKQRVSLGFKQLTPDPWLDASER 325
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 364 EREAWATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDL 420
E W +L+ + G ++EG V+ + +GA I I D GL+H+SN+S T RV S++
Sbjct: 402 ETNPWESLHEKFPVGGVVEGKVRNLTDFGAFIEIEDG-IDGLVHVSNLSWTKRVKHPSEV 460
Query: 421 LNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKEVH 461
L +G++VK +V+ ++ PD LS+ + +P ++ + E H
Sbjct: 461 LKKGDKVKAVVL-AIEPDNRRLSLGVKQLQPDVWETFFETH 500
>gi|302847311|ref|XP_002955190.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
gi|300259482|gb|EFJ43709.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
Length = 431
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 101/195 (51%), Gaps = 9/195 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ ++S + W R+RQ+++ + + V N GG+L + F+P ++
Sbjct: 202 GQVIVSLAAMEATTFWTRIRQLQEEDITVSVTVESVNKGGMLVKFGIYDGFIPVSQFGPS 261
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN-----LREGTLLEGTVKKI 386
+ + ++ +G + V+ ++E+ L+ S + A + + + G ++ G V+ +
Sbjct: 262 ITADS-MESLIGYELQVKFLEVDEEAERLVFSHKRASSMVTNDVQGFKVGDVVAGVVQSV 320
Query: 387 YPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIA 445
PYGA I +G +GLLH+S +S RV + +L EG+++KV+++ + +++LS
Sbjct: 321 KPYGAFIDLG--GVTGLLHVSQLSHDRVLVLDKILAEGDKIKVMILSQDRDRGRVTLSTK 378
Query: 446 DLESEPGLFVSDKEV 460
LE PG + D ++
Sbjct: 379 KLEPTPGDMLRDPQL 393
>gi|116789895|gb|ABK25430.1| unknown [Picea sitchensis]
Length = 381
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 95/178 (53%), Gaps = 13/178 (7%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE------LLSRVNNFTE-LK 339
W + K E +E K N+GG+L R L+ FLP ++ L R +E K
Sbjct: 88 WKKAETYKGNGEIVEGKVDGSNSGGVLVRFHSLQGFLPYSQMSPSLLLKDRSKTISESAK 147
Query: 340 EKVGRRMYVQITRINEDTNDLILSEREA-WATLNLREGTLLEGTVKKIYPYGAQIRI--- 395
+ +G + +++ ++E+ N LI SE++A W ++ EG + EG V + +GA + +
Sbjct: 148 DLIGSTLSLKVIEVSEEENMLIFSEKQAMWEKFSINEGDVFEGRVSSVTKFGAFVNLRFP 207
Query: 396 -GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G GL+HIS +S V V D+L +G+ V+V V++ ++ +++ SI L+++P
Sbjct: 208 DGGYYVDGLVHISEVSWDLVRDVRDILKKGDDVRVKVIQINVEKSRLAFSIKQLQADP 265
>gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
Length = 675
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LST+R+ W + + +E K T+ GGL+ I+ +RAF+P +++ +
Sbjct: 355 GNVVLSTKRVEGIKNWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVTTH 414
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLL 379
+L + VG + ++ I+E L+LS R +AW N+ G +
Sbjct: 415 F--VKDLSKYVGETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWE--NITVGETI 470
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-MFPD 438
G V+++ +GA I +G + GLLHIS++S R+ S D+L G+ ++ LV+K+ +
Sbjct: 471 TGKVQRLTDFGAFIDLGGVD--GLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKN 528
Query: 439 KISLSIADLESEP 451
+ISL + L+ +P
Sbjct: 529 RISLGLKQLQQKP 541
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
N EG ++EG V + +GA +++ + GL+H+S +S V SD LN G+ VKV +
Sbjct: 548 NNHEGDVIEGEVVNLVDFGAFVKLAEG-IEGLVHVSEISNEHVDKPSDELNIGDTVKVKI 606
Query: 432 VKSMFPDK--ISLSIADLESEP 451
++ + P+K I+LS+ L +P
Sbjct: 607 LE-INPEKKRIALSMKALLPKP 627
>gi|300867598|ref|ZP_07112247.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
gi|300334405|emb|CBN57417.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
Length = 306
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 10/188 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W +V ++ I+V+ T N GG+ + G+R F+P++ ++ R
Sbjct: 96 GQVTLSLRQLEIKKTWDQVTEMFNTGAVIQVRVTGHNKGGVTVDVMGMRGFIPRSHVVER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N L+ VG+ M V ++ + L+LS+R A + + + G ++EG + I
Sbjct: 156 DN----LQSLVGQSMSVSFLEVDREREKLVLSQRAATKSASFSQLEIGQIIEGKISSIKQ 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + +GLLHI +S+ + ++ + + G+ +K +++ + +ISLS L
Sbjct: 212 FG--VFVDFDGITGLLHIKEVSQKYINNLEKVFSVGQIIKAMIINLNEERGRISLSTRFL 269
Query: 448 ESEPGLFV 455
ES PG V
Sbjct: 270 ESYPGQIV 277
>gi|172057815|ref|YP_001814275.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
255-15]
gi|171990336|gb|ACB61258.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
Length = 377
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 22/191 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
++S R + AW +V E EV + GGL+ I G+R F+P A L+ R V
Sbjct: 79 VVSKREVDALQAWEKVEAKYASGEIFEVVVKDIVKGGLVVDI-GVRGFIP-ASLVERHYV 136
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATLNLRE---------GTLLEGT 382
+F++ +GR + V++ ++++ N +ILS + LN ++ G +LEGT
Sbjct: 137 EDFSDY---IGRTIAVKVVELDQEKNRVILSHKAVVEGELNAKKKETLEHLEVGQVLEGT 193
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +GA + IG + GL+HIS M+ RV SD++ EG++V+V V+ +K+
Sbjct: 194 VQRLTDFGAFVDIGGVD--GLVHISEMAHHRVERPSDIVTEGQKVEVKVLGVDRDTEKVK 251
Query: 442 LSIADLESEPG 452
LSI E++PG
Sbjct: 252 LSIK--ETQPG 260
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ ++ DT + LS +E W + + G +++G V++I +GA + +
Sbjct: 233 GQKVEVKVLGVDRDTEKVKLSIKETQPGPWQQMEGKIEAGDIVKGRVRRIVQFGAFVELA 292
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESE 450
GLLHIS ++ + S S++L EG+ ++ V++ + KISLS LE E
Sbjct: 293 -PQVEGLLHISQIANRHIGSPSEVLEEGQEIEAKVLEVHLAEHKISLSTRVLEQE 346
>gi|312131252|ref|YP_003998592.1| 30S ribosomal protein s1p [Leadbetterella byssophila DSM 17132]
gi|311907798|gb|ADQ18239.1| SSU ribosomal protein S1P [Leadbetterella byssophila DSM 17132]
Length = 604
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ ++S ++ AW ++ + + + ++ GGL+ I G+ AFLP +++
Sbjct: 101 GQLVISRKKARILTAWSKIEKALETDIIVDALIKRRTKGGLIVDIYGIEAFLPGSQI--D 158
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLLE 380
V + VG+RM V++ +IN +++++S +R+ T NL +G +LE
Sbjct: 159 VKPIRDFDVFVGKRMEVKVVKINHTNDNVVVSHKVLIEKDLESQRQQILT-NLEKGQVLE 217
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G VK I +G I +G + GLLHI+++S RV +++LN +++KV+V+ F D
Sbjct: 218 GVVKNITNFGVFIDLGGVD--GLLHITDISWGRVNHPNEVLNLDDKIKVVVLD--FDDEK 273
Query: 439 -KISLSIADLESEP 451
+ISL + LE+ P
Sbjct: 274 KRISLGMKQLEAHP 287
>gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
gi|418069327|ref|ZP_12706605.1| 30S ribosomal protein S1 [Pediococcus acidilactici MA18/5M]
gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
gi|357536796|gb|EHJ20824.1| 30S ribosomal protein S1 [Pediococcus acidilactici MA18/5M]
Length = 403
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +RL + W + + E +EV T+ GGL+ G+R F+P + + +R
Sbjct: 92 GSYLLSRKRLLARKVWKEIEEKAANGEELEVPVTQVVKGGLVVDA-GVRGFIPASMIENR 150
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V++ K G+ + V+I I + N LILS E+ +L+EG ++
Sbjct: 151 YVDDLNAYK---GQTLKVKIIEIKPEDNRLILSHKAVINAERAEKRQEVLSSLQEGEVVT 207
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
G V ++ +GA + +G + GL+HIS +S RV SD+L GE V+V V+ S+ P++
Sbjct: 208 GKVARLTNFGAFVDLGGID--GLVHISEISYERVEKPSDVLKPGEEVQVKVL-SVDPERE 264
Query: 441 SLSIADLESEPG 452
+S++ +++PG
Sbjct: 265 RISLSIKQTQPG 276
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V++ ++ + + LS ++ W + + G +L+G VK++ +GA +
Sbjct: 247 KPGEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVE 306
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ GL+HIS +S + + +D+L EG+ +KV V++ + P+ +++LSI LE P
Sbjct: 307 VF-PGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLE-VHPEERRLALSIKALEEAP 363
>gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
Length = 403
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
G LLS +RL + W + + E +EV T+ GGL+ G+R F+P + + +
Sbjct: 91 GGSYLLSRKRLLARKVWKEIEEKAANGEELEVPVTQVVKGGLVVDA-GVRGFIPASMIEN 149
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLL 379
R V++ K G+ + V+I I + N LILS E+ +L+EG ++
Sbjct: 150 RYVDDLNAYK---GQTLKVKIIEIKPEDNRLILSHKAVINAERAEKRQEVLSSLQEGEVV 206
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
G V ++ +GA + +G + GL+HIS +S RV SD+L GE V+V V+ S+ P++
Sbjct: 207 TGKVARLTNFGAFVDLGGID--GLVHISEISYERVEKPSDVLKPGEEVQVKVL-SVDPER 263
Query: 440 ISLSIADLESEPG 452
+S++ +++PG
Sbjct: 264 ERISLSIKQTQPG 276
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V++ ++ + + LS ++ W + + G +L+G VK++ +GA +
Sbjct: 247 KPGEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVE 306
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ GL+HIS +S + + +D+L EG+ +KV V++ + P+ +++LSI LE P
Sbjct: 307 VF-PGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLE-VHPEERRLALSIKALEEAP 363
>gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
Length = 686
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 18/200 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ W + + + +E + + +N GGL +EG+ F+P +++ +
Sbjct: 358 GNVSLSTRRVEGMKVWKDLAEKAENDELVHGVVSGFNKGGLTVNVEGINGFVPASQIATY 417
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA--------WATLNLREGTLLEGT 382
V NF K+ VG ++I I+E N L+LS +E W L EG ++ G
Sbjct: 418 FVKNF---KKFVGEEWDLKIISIDERKNRLVLSRKEVVEDELDGLWE--ELEEGQVVTGK 472
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V ++ +GA + + + GLLH+S+++ +RV SD+LN G+ ++V ++K + ++IS
Sbjct: 473 VARLTDFGAFVEV--NGLDGLLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRIS 530
Query: 442 LSIADLESEP-GLFVSDKEV 460
L L +P FV+ EV
Sbjct: 531 LGRKQLLEKPFEAFVNQHEV 550
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW- 368
G + GL L +++ SRV + +++ VG + V+I ++N++ N + L ++
Sbjct: 480 GAFVEVNGLDGLLHVSDIAWSRVEHPSDVL-NVGDEIEVKILKLNQEKNRISLGRKQLLE 538
Query: 369 ----ATLNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
A +N E G ++ G V + +GA + + D GL+H+S +S V SD LN
Sbjct: 539 KPFEAFVNQHEVGDVVTGKVVNLLDFGAFVEVADG-VEGLVHVSEISWEHVEKPSDELNV 597
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ ++V ++ +K+ LSI L+ P
Sbjct: 598 GDEIEVKIISIDTDEEKVGLSIKALKEAP 626
>gi|186681340|ref|YP_001864536.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186463792|gb|ACC79593.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 300
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++++ + ++V+ N GG+ I LR F+P++ L R
Sbjct: 96 GQVTLSRKQLEIQHIWERLAEMQENAQTVQVRVMGVNKGGVTVDILSLRGFIPRSHLAER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N LK G+ + V IN++TN LILS+R A + N L G L+EG V I P
Sbjct: 156 -DNLDALK---GQNLTVGFLEINKNTNKLILSQRLATRSSNFSLLELGQLVEGKVTGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + LLHI +S+ + S+ + G+ +K +++ +++LS L
Sbjct: 212 FGVFVDL--NGMGALLHIKQVSQKFIDSLEKVFKVGQPIKAVIIDLDEGKGRVALSTRVL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|169824523|ref|YP_001692134.1| fused penicillin tolerance LytB domain-containing protein/30S
ribosomal protein S1 [Finegoldia magna ATCC 29328]
gi|302380664|ref|ZP_07269129.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna ACS-171-V-Col3]
gi|167831328|dbj|BAG08244.1| fusion penicillin tolerance LytB domain and 30S ribosomal protein
S1 [Finegoldia magna ATCC 29328]
gi|302311607|gb|EFK93623.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna ACS-171-V-Col3]
Length = 675
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LST+R+ W + + +E K T+ GGL+ I+ +RAF+P +++ +
Sbjct: 355 GNVVLSTKRVEGIKNWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVTTH 414
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLL 379
+L + VG + ++ I+E L+LS R +AW N+ G +
Sbjct: 415 F--VKDLSKYVGETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWE--NITVGEKI 470
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-MFPD 438
G V+++ +GA I +G + GLLHIS++S R+ S D+L G+ ++ LV+K+ +
Sbjct: 471 TGKVQRLTDFGAFIDLGGVD--GLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKN 528
Query: 439 KISLSIADLESEP 451
+ISL + L+ +P
Sbjct: 529 RISLGLKQLQQKP 541
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
N EG ++EG V + +GA +++ + GL+H+S +S V SD LN G+ VKV +
Sbjct: 548 NNHEGDVIEGEVVNLVDFGAFVKLAEG-IEGLVHVSEISNEHVDKPSDELNIGDTVKVKI 606
Query: 432 VKSMFPDK--ISLSIADLESEP 451
++ + P+K I+LS+ L +P
Sbjct: 607 LE-INPEKKRIALSMKALLPKP 627
>gi|427439251|ref|ZP_18923993.1| 30S ribosomal protein S1 [Pediococcus lolii NGRI 0510Q]
gi|425788629|dbj|GAC44781.1| 30S ribosomal protein S1 [Pediococcus lolii NGRI 0510Q]
Length = 403
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +RL + W + + E +EV T+ GGL+ G+R F+P + + +R
Sbjct: 92 GSYLLSRKRLLARKVWKEIEEKAANGEELEVPVTQVVKGGLVVDA-GVRGFIPASMIENR 150
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V++ K G+ + V+I I + N LILS E+ +L+EG ++
Sbjct: 151 YVDDLNAYK---GQTLKVKIIEIKPEDNRLILSHKAVINAERAEKRQEVLSSLQEGEVVT 207
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
G V ++ +GA + +G + GL+HIS +S RV SD+L GE V+V V+ S+ P++
Sbjct: 208 GKVARLTNFGAFVDLGGID--GLVHISEISYERVEKPSDVLKPGEEVQVKVL-SVDPERE 264
Query: 441 SLSIADLESEPG 452
+S++ +++PG
Sbjct: 265 RISLSIKQTQPG 276
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V++ ++ + + LS ++ W + + G +L+G VK++ +GA +
Sbjct: 247 KPGEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVE 306
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ GL+HIS +S + + +D+L EG+ +KV V++ + P+ +++LSI LE P
Sbjct: 307 VF-PGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLE-VHPEERRLALSIKALEEAP 363
>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JDR-2]
gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
Length = 411
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 61/315 (19%)
Query: 150 ESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLY 209
E I+V D+ D + K GD V G ++ ++N+ V++G G V+P+
Sbjct: 3 EEINVQDQAAMDN----FVSLKKGDTVKGTIIKIDDNQAYVSLGYKYDG------VIPV- 51
Query: 210 DKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRT 269
+E+ + D DA + ++ +V DD
Sbjct: 52 -RELSAVQLDNANDAVQVGQEVELKVVSIDDE---------------------------- 82
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
+ +LS R + + AW ++ + E EV + GGL+ + G+R F+P A ++
Sbjct: 83 -KEKLVLSKRLIDGERAWDGLQSRFESGEVFEVAVADVVKGGLVADV-GVRGFIP-ASMV 139
Query: 330 SR--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGT 377
R V +F++ K GR + V++ I+ + N +ILS ++ L+ G
Sbjct: 140 ERHFVEDFSDYK---GRTLRVKVKEIDRENNKVILSAKDVLDAEFEQNKQHVIAGLQVGA 196
Query: 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMF 436
LEGTV+++ P+GA + IG + GL+H+S +S V D+++EG++V V V+K
Sbjct: 197 QLEGTVQRLTPFGAFVDIGGID--GLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKVDPA 254
Query: 437 PDKISLSIADLESEP 451
KISLSI + P
Sbjct: 255 AGKISLSIKAAQPGP 269
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ +++ + LS + A W A G ++ GTV+++ +GA + I
Sbjct: 241 GQQVTVKVLKVDPAAGKISLSIKAAQPGPWESAAGQFNVGDIVTGTVRRLVTFGAFVEIA 300
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEP 451
GL+HIS ++ + + ++L EG+ V+ V+ +K +SLSI + E P
Sbjct: 301 -PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFNPAEKRVSLSIKETEEAP 355
>gi|303233770|ref|ZP_07320424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna BVS033A4]
gi|302495204|gb|EFL54956.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna BVS033A4]
Length = 675
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LST+R+ W + + +E K T+ GGL+ I+ +RAF+P +++ +
Sbjct: 355 GNVVLSTKRVEGIKNWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVTTH 414
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLL 379
+L + VG + ++ I+E L+LS R +AW N+ G +
Sbjct: 415 F--VKDLSKYVGETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWE--NITVGEKI 470
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-MFPD 438
G V+++ +GA I +G + GLLHIS++S R+ S D+L G+ ++ LV+K+ +
Sbjct: 471 TGKVQRLTDFGAFIDLGGVD--GLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKN 528
Query: 439 KISLSIADLESEP 451
+ISL + L+ +P
Sbjct: 529 RISLGLKQLQQKP 541
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 270 LSGRPLL-STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LS R ++ + R+ AW + + E I K G + G+ L +++
Sbjct: 443 LSHRAVVEAERKEIEDKAWENI----TVGEKITGKVQRLTDFGAFIDLGGVDGLLHISDI 498
Query: 329 -LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA------TLNLREGTLLEG 381
+R+ + ++ KVG + + + N + N + L ++ N EG ++EG
Sbjct: 499 SWNRIESPEDVL-KVGDEIETLVLKANREKNRISLGLKQLQQKPFDAFVENNHEGDVIEG 557
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-- 439
V + +GA +++ + GL+H+S +S V SD LN G+ VKV +++ + P+K
Sbjct: 558 EVVNLVDFGAFVKLAEG-IEGLVHVSEISNEHVDKPSDELNIGDTVKVKILE-INPEKKR 615
Query: 440 ISLSIADLESEP 451
I+LS+ L +P
Sbjct: 616 IALSMKALLPKP 627
>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
Length = 501
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 86 VVTVGDFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 146 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 201
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 202 QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 259
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 260 EVGQEVTVEVLDVDMDRERVSLSLKATQEDP 290
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + +EL +++ +E+ E VG+ + V++ ++ D + LS +
Sbjct: 230 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVE-VGQEVTVEVLDVDMDRERVSLSLKATQE 288
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W G ++ G V K+ P+GA +R+ D GL+HIS ++ V ++
Sbjct: 289 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQV 347
Query: 424 GERVKVLVVK-SMFPDKISLSI 444
G+ V + V+ + +ISLS+
Sbjct: 348 GDDVMIKVIDIDLERRRISLSL 369
>gi|365853598|ref|ZP_09393865.1| putative ribosomal protein S1 [Lactobacillus parafarraginis F0439]
gi|363712223|gb|EHL95922.1| putative ribosomal protein S1 [Lactobacillus parafarraginis F0439]
Length = 409
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS+RRL + W + + + +E I K ++ GGL+ G+R F+P A ++S
Sbjct: 89 GSFLLSSRRLEARKVWDELAEKSKNDETITAKVSQAVKGGLVVDA-GVRGFIP-ASMIS- 145
Query: 332 VNNFTE-LKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLL 379
+++ E L + G+ + ++I I+ N LILS ERE NL EG ++
Sbjct: 146 -DHYVEDLNQFKGQELELKIIEIDPVANRLILSHKAILQAQRAQEREKLME-NLHEGDIV 203
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-D 438
EG V ++ +GA + +G GL+H+S ++ RV SD+L G+ VKV V+ F +
Sbjct: 204 EGKVARLTSFGAFVDLG--GMDGLVHVSQIAYERVDKPSDVLKVGQEVKVKVLSVDFDRN 261
Query: 439 KISLSIADLESEP 451
+ISLSI EP
Sbjct: 262 RISLSIKQTLPEP 274
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 105/194 (54%), Gaps = 15/194 (7%)
Query: 270 LSGRPLLSTRRLFR-KMAWHRVRQIKQLNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKA 326
++ R +LS + + + + A R + ++ L+E +E K + G + G+ + +
Sbjct: 170 VANRLILSHKAILQAQRAQEREKLMENLHEGDIVEGKVARLTSFGAFVDLGGMDGLVHVS 229
Query: 327 EL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATLNLRE--GTLL 379
++ RV+ +++ KVG+ + V++ ++ D N + LS + E W + + G++L
Sbjct: 230 QIAYERVDKPSDVL-KVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPAGSVL 288
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EGTVK++ +GA + + GL+HIS +S + + D+L GE++KV V+ + P+
Sbjct: 289 EGTVKRLVDFGAFVEVF-PGVEGLVHISQISHEHIATPGDVLKVGEQIKVKVL-DVDPER 346
Query: 439 -KISLSIADLESEP 451
+++LSI L +P
Sbjct: 347 KRLALSIKALTDKP 360
>gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
Length = 382
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ E +V + GGL+ + G+R F+P + + L V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL-GVRGFIPASLVELHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVEQELESKKKDAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV +D+L +G+ VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHDRVEQPADVLTQGQSVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ DT + LS + A W + ++ G + EG VK+I +GA + I
Sbjct: 235 GQSVKVKVLSVDADTQRISLSIKAAQPGPWENVAAEVKPGDIREGLVKRIVTFGAFVEIL 294
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSI 444
GL+H+S ++ V + +++L G+ VKV V++ +K ISLSI
Sbjct: 295 -PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342
>gi|417926498|ref|ZP_12569896.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna SY403409CC001050417]
gi|341589013|gb|EGS32380.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna SY403409CC001050417]
Length = 675
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LST+R+ W + + +E K T+ GGL+ I+ +RAF+P +++ +
Sbjct: 355 GNVVLSTKRVEGIKNWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPGSQVTTH 414
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLL 379
+L + VG + ++ I+E L+LS R +AW N+ G +
Sbjct: 415 F--VKDLSKYVGETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWE--NITVGEKI 470
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-MFPD 438
G V+++ +GA I +G + GLLHIS++S R+ S D+L G+ ++ LV+K+ +
Sbjct: 471 TGKVQRLTDFGAFIDLGGVD--GLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKN 528
Query: 439 KISLSIADLESEP 451
+ISL + L+ +P
Sbjct: 529 RISLGLKQLQQKP 541
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 270 LSGRPLL-STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LS R ++ + R+ AW + + E I K G + G+ L +++
Sbjct: 443 LSHRAVVEAERKEIEDKAWENI----TVGEKITGKVQRLTDFGAFIDLGGVDGLLHISDI 498
Query: 329 -LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA------TLNLREGTLLEG 381
+R+ + ++ KVG + + + N + N + L ++ N EG ++EG
Sbjct: 499 SWNRIESPEDVL-KVGDEIETLVLKANREKNRISLGLKQLQQKPFDAFVENNHEGDVIEG 557
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-- 439
V + +GA +++ + GL+H+S +S V SD LN G+ VKV +++ + P+K
Sbjct: 558 EVVNLVDFGAFVKLAEG-IEGLVHVSEISNEHVDKPSDELNIGDTVKVKILE-INPEKKR 615
Query: 440 ISLSIADLESEP 451
I+LS+ L +P
Sbjct: 616 IALSMKALLPKP 627
>gi|124025297|ref|YP_001014413.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
str. NATL1A]
gi|123960365|gb|ABM75148.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. NATL1A]
Length = 465
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 116/252 (46%), Gaps = 28/252 (11%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSGPG-RPVVETG------------TVLFAEVL---GRTLS 271
+ +G + V+ D GG PG P E G L EVL +
Sbjct: 185 IAKGSVIAVESDGIYVDIGGKAPGFMPKNECGLGVITNLKERFPKGLKVEVLVTREQNAD 244
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S R L + +W +V+ + + + I VK +N GG+ EGLR F+P+++L
Sbjct: 245 GMVTISCRALELRKSWDKVQNLAKEGKVIRVKINGFNRGGVTCDFEGLRGFIPRSQLEDG 304
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
N+ + V + + +N + L+LSE++A E G L+EG + I P
Sbjct: 305 ENH----QSLVSKTISTAFLEVNPERRKLVLSEKKAAIASRFSELEIGQLIEGEILTIKP 360
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIAD 446
YG + + SGLLH S ++ + S+ ++ GE +K L+ + P +I L+ A
Sbjct: 361 YGFFVDL--RGVSGLLHHSMVTNGSMRSLREVFQPGESIKALIT-DLDPSRGRIGLNTAL 417
Query: 447 LESEPGLFVSDK 458
LE PG ++DK
Sbjct: 418 LEGPPGELITDK 429
>gi|440684640|ref|YP_007159435.1| RNA binding S1 domain protein [Anabaena cylindrica PCC 7122]
gi|428681759|gb|AFZ60525.1| RNA binding S1 domain protein [Anabaena cylindrica PCC 7122]
Length = 300
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W ++ Q+++ ++ ++V+ T N GG+ + LR F+P++ L R
Sbjct: 96 GQVTLSRKQLEIQQIWVKLLQMQENSQTVQVRVTGVNKGGVTVDLLSLRGFIPRSHLADR 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW--ATLNLRE-GTLLEGTVKKIYP 388
+N LK G+ + IN +TN LILS+R A ++ +L E G L+EG + I P
Sbjct: 156 -DNLETLK---GQTLTAGFLEINRNTNKLILSQRLATRSSSFSLLELGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + S LLHI +S+ + S+ + G+ +K +++ +++LS L
Sbjct: 212 FGVFVEL--NGVSALLHIKQVSQKFIESLEKVFQIGQPIKAVIIDLDEGKGRVALSTRVL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENHPG 274
>gi|395242108|ref|ZP_10419107.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
gi|394480469|emb|CCI85347.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
Length = 402
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 16/198 (8%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ ++++ + PIE T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAFDKLQKDFEEGNPIEGTVTSSVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ SR ++LK +G+ M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISSRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFGKVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
++EG V ++ +GA I +G + GL+HIS +S V SD L G+ VKV V+ +
Sbjct: 199 DVVEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKPSDALKVGQDVKVKVI-GID 255
Query: 437 PDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 256 DDRHRISLSIKQTEPSPF 273
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I++D + + LS ++ AT L EG + EG V
Sbjct: 231 YKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSGLHEGDIFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ + P +IS
Sbjct: 291 KSLTNFGAFVEVTDGIQ-GLVHVSEISNKHVDKPSDVLKVGQSVKVKVL-GIDPSEKRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|115456549|ref|NP_001051875.1| Os03g0844900 [Oryza sativa Japonica Group]
gi|41469634|gb|AAS07357.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
sativa Japonica Group]
gi|108712064|gb|ABF99859.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|113550346|dbj|BAF13789.1| Os03g0844900 [Oryza sativa Japonica Group]
gi|215712403|dbj|BAG94530.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 339
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 257 TGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI 316
GT E + S P+ R W R + + ++++ N+GGL+ R
Sbjct: 51 AGTTAAQEGASASASAPPVDEARLAQFAADWQAARAERDQGKILKLQVIRANSGGLIVRF 110
Query: 317 EGLRAFLPKAELLSRVNNFTE--------LKEKVGRRMYVQITRINEDTNDLILSEREA- 367
L+ F+P LLS + + K+ VG + V++ +NE+ L+ SE++A
Sbjct: 111 NSLQGFVPN-PLLSPAHWCKDPKRPIQDVTKDLVGSSISVKVVEVNEEERKLVFSEKDAS 169
Query: 368 WATLN--LREGTLLEGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLL 421
W T + ++ G + +G V ++ YGA + + G+ + +GL+HIS +S V V D L
Sbjct: 170 WFTHSSLVKIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFL 229
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKEV 460
NEG+ VKV+VV M +I+LSI LE +P L DK +
Sbjct: 230 NEGDTVKVIVVNIDMEKSRIALSIRQLEEDPLLETLDKVI 269
>gi|407477496|ref|YP_006791373.1| 30S ribosomal protein S1 [Exiguobacterium antarcticum B7]
gi|407061575|gb|AFS70765.1| 30S ribosomal protein S1 [Exiguobacterium antarcticum B7]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 22/191 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
++S R + AW +V + E EV + GGL+ I G+R F+P A L+ R V
Sbjct: 79 VVSKREVDALQAWGKVEAKYESGEIFEVVVKDIVKGGLVVDI-GVRGFIP-ASLVERHYV 136
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATLNLRE---------GTLLEGT 382
+F++ +GR + V++ ++++ N +ILS + LN ++ G +LEGT
Sbjct: 137 EDFSDY---IGRSIEVKVVELDQEKNRVILSHKAVVEGELNAKKKETLEQLEVGQILEGT 193
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +GA + IG + GL+HIS M+ RV SD++ EG+++ V V+ +K+
Sbjct: 194 VQRLTDFGAFVDIGGVD--GLVHISEMAHHRVERPSDIVTEGQKIDVKVLGVDRDTEKVK 251
Query: 442 LSIADLESEPG 452
LSI E++PG
Sbjct: 252 LSIK--ETQPG 260
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ ++ DT + LS +E W + + G +++G V++I +GA + +
Sbjct: 233 GQKIDVKVLGVDRDTEKVKLSIKETQPGPWKQMEGKIEAGDIVKGRVRRIVQFGAFVELA 292
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESE 450
GLLHIS ++ + S S++L EG+ ++ V++ + KISLS LE E
Sbjct: 293 -PQVEGLLHISQIANRHIGSPSEVLEEGQEIEAKVLEVHLAEHKISLSTRVLEQE 346
>gi|348171102|ref|ZP_08877996.1| 30S ribosomal protein S1 [Saccharopolyspora spinosa NRRL 18395]
Length = 499
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 86 VVTVGDFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 146 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 201
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 202 QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 259
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 260 EVGQEVTVEVLDVDMDRERVSLSLKATQEDP 290
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + +EL +++ +E+ E VG+ + V++ ++ D + LS +
Sbjct: 230 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVE-VGQEVTVEVLDVDMDRERVSLSLKATQE 288
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W G ++ G V K+ P+GA +R+ D GL+HIS ++ V ++
Sbjct: 289 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQV 347
Query: 424 GERVKVLVVK-SMFPDKISLSI 444
G+ V + V+ + +ISLS+
Sbjct: 348 GDEVMIKVIDIDLERRRISLSL 369
>gi|72383697|ref|YP_293052.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
gi|72003547|gb|AAZ59349.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 431
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 12/188 (6%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R L + +W +V+ + + + I VK +N GG+ EGLR F+P+++L N+
Sbjct: 215 ISCRALELRKSWDKVQNLAKEGKVIRVKINGFNRGGVTCDFEGLRGFIPRSQLEDGENH- 273
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYPYGAQ 392
+ V + + +N + L+LSE++A E G L+EG + I PYG
Sbjct: 274 ---QSLVSKTISTAFLEVNPERRKLVLSEKKAAIASRFSELEIGQLIEGEILTIKPYGFF 330
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESE 450
+ + SGLLH S ++ + S+ ++ GE +K L+ + P +I L+ A LE
Sbjct: 331 VDL--RGVSGLLHHSMVTNGSMRSLREVFQPGESIKALIT-DLDPSRGRIGLNTALLEGP 387
Query: 451 PGLFVSDK 458
PG ++DK
Sbjct: 388 PGELITDK 395
>gi|291550880|emb|CBL27142.1| Ribosomal protein S1 [Ruminococcus torques L2-14]
Length = 231
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 98/172 (56%), Gaps = 16/172 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRR 345
W+RV+ + VK GG++ +EGLR F+P ++L LS + N L++ + +
Sbjct: 30 WNRVQDYMDKKTVLPVKIEGVVNGGVIVMVEGLRGFVPASKLSLSYIEN---LEDYLLKD 86
Query: 346 MYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTVKKIYPYGAQIRI 395
+ VQ+ +++ N L+LS RE +++ GT+L+GTV+ + YGA +++
Sbjct: 87 IEVQVIDVDQANNRLVLSARELLKEKEKAARDAQIASMKVGTVLKGTVETLQNYGAFVKL 146
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
++ SGL+H+S +S+ R+ SD+L G+ V+V V+ + KISLS+ L
Sbjct: 147 -ENGLSGLVHVSQISQKRIKMPSDVLTVGDEVEVKVI-GIKDGKISLSMKAL 196
>gi|297624806|ref|YP_003706240.1| RNA binding S1 domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297165986|gb|ADI15697.1| RNA binding S1 domain protein [Truepera radiovictrix DSM 17093]
Length = 705
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R ++ AW+ ++ I P+EV+ E GGL+ + G+RAFLP +++ + RVN
Sbjct: 194 ILSKKRADQERAWNLLQDIYDKKLPVEVEIVEKVRGGLVANL-GVRAFLPASQVDVRRVN 252
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLEGTV 383
+ + VG+R+ V+I +N N +I+S E++A L G LEG V
Sbjct: 253 DLSPY---VGKRLKVRIIELNRRRNRVIISRRSILEEELAEQKAETLKKLEPGARLEGEV 309
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+I +GA + +G + GL+H S ++ R ++L G++VKV V+ + ++I+L
Sbjct: 310 VEITDFGAFVNLGGID--GLVHRSEITHGRFNHPREVLEVGQKVKVEVLDMDLERERINL 367
Query: 443 SIADLESEP 451
S+ L ++P
Sbjct: 368 SMKSLRADP 376
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311
R V+E G + EVL L + + + R W V + + I K T G
Sbjct: 342 REVLEVGQKVKVEVLDMDLERERINLSMKSLRADPWENVLANYHIGQKISGKVTNLTPFG 401
Query: 312 LLTRIE-GLRAFLPKAEL--LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA- 367
IE GL + +E+ RV + EL E+ G+ + I +I+ + L R+
Sbjct: 402 AFVEIEEGLEGLIHVSEMSWTKRVRHPKELLEE-GQEVEAMILKIDVQQQRISLGMRQTQ 460
Query: 368 ---WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
W++L R GT + G + + +G + I + GL+HIS ++ + +S+ +
Sbjct: 461 PDPWSSLPDRYPPGTEVTGPITGLTDFGVFMEI-EEGIEGLVHISELAHEHIEDISEHFS 519
Query: 423 EGERVKVLVV 432
G+ + +++
Sbjct: 520 RGDEITAVIL 529
>gi|241889493|ref|ZP_04776792.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
gi|241863800|gb|EER68183.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
Length = 402
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 19/177 (10%)
Query: 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVG 343
+++W + + + E I+ + GGLL +EGLRAF+P + + ++ +L + VG
Sbjct: 108 ELSWAGIIEKFENGELIQATVSGQTKGGLLADVEGLRAFIPGSYIDTKFRK--DLSKFVG 165
Query: 344 RRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLEGTVKKIYPYGA 391
+I +++ N +IL+ R E + +N EG ++EG V +I +GA
Sbjct: 166 NEYTFKIEEVDKSKNKIILNRRVILEEEKAKKLAEVYGNIN--EGDVIEGKVSRITDFGA 223
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+ IG+ + GLLHIS +S RV V+D+L+ G+ +KV V+ +K+SLS L
Sbjct: 224 FVNIGEVD--GLLHISEISHARVEKVADVLSVGDTIKVAVIAVDKENEKVSLSAKTL 278
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG + V + ++++ + LS + W A ++ G LEG V+ +GA + +
Sbjct: 253 VGDTIKVAVIAVDKENEKVSLSAKTLLPTQWEVARATIKAGDALEGVVRNTTAFGAFVEV 312
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADL 447
+ GL+HIS +S RVT+V D+L +G++V V V++ F + ++SLSI +L
Sbjct: 313 L-PDVEGLVHISQISHERVTNVEDVLKKGDKVNVKVLEFDFENERLSLSIKEL 364
>gi|417002438|ref|ZP_11941827.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 687
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 17/190 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ W + + + +E + + T +N GGL ++G+ F+P +++ +
Sbjct: 358 GNVALSTRRVEGMRVWKDLAEKAENDELVHGEVTGFNKGGLTVNVDGVNGFVPASQIATY 417
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATLNLREGTLLEGT 382
V NF K+ VG ++I I+E N L+LS + E W L EG ++ G
Sbjct: 418 FVKNF---KKFVGEDWDLKIVSIDERKNRLVLSRKDVVEGQLDELWD--ELEEGQVVTGK 472
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V ++ +GA + + + GLLH+S+++ +RV SD+LN G+ V+V ++K + ++IS
Sbjct: 473 VARLTDFGAFVEV--NGLDGLLHVSDIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRIS 530
Query: 442 LSIADLESEP 451
L L +P
Sbjct: 531 LGRKQLLEKP 540
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---- 365
G + GL L +++ SRV + +++ VG + V+I ++N++ N + L +
Sbjct: 480 GAFVEVNGLDGLLHVSDIAWSRVEHPSDVL-NVGDEVEVKILKLNKEKNRISLGRKQLLE 538
Query: 366 ---EAWATLNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
EA+A N E G ++ G V + +GA + + D GL+H+S +S V SD L
Sbjct: 539 KPFEAFA--NQHEVGDVVTGKVVNLLDFGAFVEVADG-VEGLVHVSEISWEHVEKPSDEL 595
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
N G+ ++V ++ +K+ LSI L+ P
Sbjct: 596 NVGDEIEVKIISLDKEEEKVGLSIKALKEAP 626
>gi|331084456|ref|ZP_08333558.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401319|gb|EGG80906.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 233
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 16/174 (9%)
Query: 285 MAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVG 343
+ W ++ Q+K+ EV GG++ +EG+RAF+P ++L L+ V N + +K
Sbjct: 31 LIWDKLEQMKEDKTEFEVSVEGIVKGGVIAYVEGIRAFIPVSKLALNYVENPEDFLKKT- 89
Query: 344 RRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQI 393
+ V++ ++E N L+LS +E +++ G+++EGTV+ + YGA I
Sbjct: 90 --ITVRVFEVDEQENRLVLSAKEILKEKADAEKRSKIDDIKVGSIVEGTVESLQTYGAFI 147
Query: 394 RIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
+GD SGL+H+S +S R+ S +L+ G+ VK V+K+ KISLS+ L
Sbjct: 148 DLGD-GISGLVHVSQISEKRIKSPKAVLSIGDTVKAKVIKNE-DGKISLSMKAL 199
>gi|350564015|ref|ZP_08932834.1| ribosomal protein S1 [Thioalkalimicrobium aerophilum AL3]
gi|349778015|gb|EGZ32374.1| ribosomal protein S1 [Thioalkalimicrobium aerophilum AL3]
Length = 552
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + R W R+ + NE + T GGL +EG+R FLP + + +R
Sbjct: 80 GETRLSREKAKRAKTWDRLEAAVEKNETVLGLITGKVKGGLTVDVEGVRGFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLL 379
+ +F L+ G+ + +++ +I+ N++++S EREA N+ EG++L
Sbjct: 140 PIRDFGFLE---GKEVELKLVKIDRKRNNVVVSRRAVIEQESSAEREALLA-NMEEGSVL 195
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
+G VK + YGA I +G + GLLHI++M+ RV S+++ G+ ++V V+K +
Sbjct: 196 KGIVKNLTDYGAFIDLGGVD--GLLHITDMAWRRVNHPSEIVQVGDEIEVKVLKFDKERN 253
Query: 439 KISLSIADLESEP 451
++SL + +E +P
Sbjct: 254 RVSLGLKQMEEDP 266
>gi|334143908|ref|YP_004537064.1| 30S ribosomal protein S1 [Thioalkalimicrobium cyclicum ALM1]
gi|333964819|gb|AEG31585.1| ribosomal protein S1 [Thioalkalimicrobium cyclicum ALM1]
Length = 552
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + R W R+ + NE + T GGL +EG+R FLP + + +R
Sbjct: 80 GETRLSREKAKRAKTWDRLEAAVEKNETVVGLVTGKVKGGLTVDVEGVRGFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLL 379
+ +F L+ G+ + +++ +I+ N++++S EREA N+ EG++L
Sbjct: 140 PIRDFGFLE---GKEVEMKLVKIDRKRNNVVVSRRAVIEQESSAEREALLA-NMEEGSVL 195
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
+G VK + YGA I +G + GLLHI++M+ RV S+++ G+ ++V V+K +
Sbjct: 196 KGIVKNLTDYGAFIDLGGVD--GLLHITDMAWRRVNHPSEIVQVGDEIEVKVLKFDKERN 253
Query: 439 KISLSIADLESEP 451
++SL + +E +P
Sbjct: 254 RVSLGLKQMEEDP 266
>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
Length = 486
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR LLS +R + AW ++ ++K+ + + E GGL
Sbjct: 80 VVEVGDQVEALVLQKEDKEGRLLLSKKRAQYERAWSQIEEVKEADGVVTGTVIEVVKGGL 139
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +GR + +I ++++ N+++LS R +W
Sbjct: 140 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLS-RRSWLEET 195
Query: 371 ---------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++G + +G + I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 QSQARGEFLTNLKKGQVRDGVISSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 253
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ M +++SLS+ + +P
Sbjct: 254 EVGQKVTVEVLDVDMDRERVSLSLKATQEDP 284
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + +EL +++ +E+ E VG+++ V++ ++ D + LS +
Sbjct: 224 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVE-VGQKVTVEVLDVDMDRERVSLSLKATQE 282
Query: 366 EAWATLNLREG--TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W T G ++ G V K+ P+GA +R+ D GL+HIS +++ V ++
Sbjct: 283 DPWQTFARTHGIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHISELAQRHVDLPEQVVKV 341
Query: 424 GERVKVLVVK-SMFPDKISLSI 444
GE V V V+ + +ISLS+
Sbjct: 342 GEDVFVKVIDIDLERRRISLSL 363
>gi|336054211|ref|YP_004562498.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
gi|333957588|gb|AEG40396.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
Length = 403
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDYEEGNAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA + +G + GL+HIS +S V
Sbjct: 180 VEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFVDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
SD+L G+ VKV V+ +ISLSI +E P
Sbjct: 238 SDVLKAGQEVKVKVIGIDNDRHRISLSIKQIEPSP 272
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE------AWATLNLREGTLLEGTV 383
+ + K G+ + V++ I+ D + + LS ++ AT NL EG + EG V
Sbjct: 231 YKHVDKPSDVLKAGQEVKVKVIGIDNDRHRISLSIKQIEPSPFEQATANLNEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ DK ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISL 349
Query: 443 SI 444
SI
Sbjct: 350 SI 351
>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain-containing protein [Kyrpidia tusciae DSM
2912]
gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Kyrpidia tusciae DSM 2912]
Length = 383
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS + + + AW R++Q + E EV+ + GGL+ + G+RAF+P A L+ R
Sbjct: 78 GKLVLSKKAVDAEKAWERLQQRFESQETFEVQVADVVKGGLVADV-GVRAFIP-ASLVER 135
Query: 332 --VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLL 379
V +F+E K GR + V++ ++ N +ILS++ L+ G ++
Sbjct: 136 HFVEDFSEYK---GRTLRVKVAELDRSDNKVILSQKAVLEEEYQQKKEEVLHRLQPGDII 192
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
G V+++ +GA + +G + GL+HIS ++ RV S+++ EG+ V V V+K + P++
Sbjct: 193 TGKVQRLTNFGAFVDVGGVD--GLVHISELAWHRVEHPSEVVKEGDEVTVKVLK-VDPER 249
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 250 ERVSLSIKEANPG 262
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G + G+ + +EL RV + +E+ K G + V++ +++ + + LS +EA
Sbjct: 203 GAFVDVGGVDGLVHISELAWHRVEHPSEVV-KEGDEVTVKVLKVDPERERVSLSIKEANP 261
Query: 368 --WATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W+ ++ R G ++ GTV+++ +GA + + + GL+HIS ++ R+ + ++L
Sbjct: 262 GPWSGVSERYHVGDVVTGTVRRLVSFGAFVEL-EPGVEGLVHISQIANRRIGTPQEVLEP 320
Query: 424 GERVKVLVVKSMFPD-KISLSIADLESE 450
G+ V+V ++ D +ISLSI + E +
Sbjct: 321 GQEVRVKILDVNEEDQRISLSIREAEGD 348
>gi|313678983|ref|YP_004056722.1| 30S ribosomal protein s1 [Oceanithermus profundus DSM 14977]
gi|313151698|gb|ADR35549.1| SSU ribosomal protein S1P [Oceanithermus profundus DSM 14977]
Length = 597
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 15/195 (7%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS +R AW ++ ++ + EP+EV E GGL+ +EG+RAF+P +++ +
Sbjct: 152 ILSKKRAEADKAWRKIVELAEKGEPVEVTVREKVRGGLVAYLEGVRAFIPASQV--DIKR 209
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTVK 384
EL E VG+ + V+IT IN +ILS R A L G +EG V
Sbjct: 210 VAELDEFVGQTIPVKITEINRKKGRVILSRRVLLEEDQKKKRAEVLEGLEPGAEVEGKVV 269
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
++ +GA + +G + GL+H S +S R +++ G+ VK V+ ++++LS
Sbjct: 270 EVTDFGAFVNLGAID--GLIHRSELSWGRFEHPREVVKVGDEVKAKVLSVDKERERVNLS 327
Query: 444 IADLESEPGLFVSDK 458
I L +P ++K
Sbjct: 328 IKALTPDPWQTAAEK 342
>gi|404329832|ref|ZP_10970280.1| 30S ribosomal protein S1 [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 387
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 110/198 (55%), Gaps = 22/198 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + AW + + + E V+ + GGL+ + G+R F+P A L+ R V
Sbjct: 81 VLSKREVDADKAWDDLEEKYKNKETFSVEIADVVKGGLVVDL-GVRGFIP-ASLVERHFV 138
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F++ K G+ + V+I ++ + +ILS R +A +++EG ++EGT
Sbjct: 139 EDFSDYK---GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDVIEGT 195
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKI 440
V+++ +GA + IG + GL+HIS ++ V + S++++EG++VKV V+ S+ P ++I
Sbjct: 196 VQRLTDFGAFVDIGGVD--GLVHISQLAHYHVETPSEVVSEGDKVKVKVL-SVDPESERI 252
Query: 441 SLSIADLESEPGLFVSDK 458
SLSI + P DK
Sbjct: 253 SLSIKATQPGPWETAKDK 270
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ ++ ++ + LS + W T + +G L+GTVK++ P+GA + +
Sbjct: 235 GDKVKVKVLSVDPESERISLSIKATQPGPWETAKDKIHQGDALQGTVKRLVPFGAFVELL 294
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESE 450
GL+HIS +S + + ++L+EG+ +KV V+ F D ++SLSI LE+E
Sbjct: 295 -PGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIKALENE 348
>gi|357018753|ref|ZP_09081016.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC
19527]
gi|356481471|gb|EHI14576.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC
19527]
Length = 478
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +EP++ E GGL
Sbjct: 79 VVSVGDQVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +GR + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|339627836|ref|YP_004719479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Sulfobacillus
acidophilus TPY]
gi|379007470|ref|YP_005256921.1| RNA binding S1 domain-containing protein [Sulfobacillus acidophilus
DSM 10332]
gi|339285625|gb|AEJ39736.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Sulfobacillus acidophilus TPY]
gi|361053732|gb|AEW05249.1| RNA binding S1 domain protein [Sulfobacillus acidophilus DSM 10332]
Length = 416
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 25/224 (11%)
Query: 252 RP--VVETGTVLFAEVLG-RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
RP VV G V+ V+G G LS ++ ++AW R+ + ++ E +E E
Sbjct: 78 RPEEVVHLGDVISVYVVGYEGEEGTLKLSKKKADERVAWERLEEAQRNGEILEAPVVEVV 137
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--- 365
GGL+ + GLR F+P + L ++L +G+ + V++ ++ + ILS +
Sbjct: 138 KGGLVVDV-GLRGFVPAS--LVAPGFISDLTPFLGQTLRVKVVELDRNKRRAILSRKDVV 194
Query: 366 ---------EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTS 416
E W+ + EG + EGTVK + +GA I +G + GLLHIS MS R+
Sbjct: 195 EQESKAKQEEIWS--KIAEGQIWEGTVKSLTEFGAFIDLGGVD--GLLHISEMSWHRINH 250
Query: 417 VSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPGLFVSDK 458
S++L G++V+V V++ + P+ KISL + +E P V+++
Sbjct: 251 PSEILEVGQKVRVKVLR-LNPEKGKISLGLRQVEGNPWDTVAER 293
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 83/154 (53%), Gaps = 16/154 (10%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G + G+ L +E+ R+N+ +E+ E VG+++ V++ R+N + + L R+
Sbjct: 226 GAFIDLGGVDGLLHISEMSWHRINHPSEILE-VGQKVRVKVLRLNPEKGKISLGLRQVEG 284
Query: 368 --WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W T+ R EG + GTV ++ +G +++ + GL+HIS ++ RV S+++
Sbjct: 285 NPWDTVAERYLEGRIYRGTVVRLASFGVFVQL-EPGVDGLVHISQLADYRVGEPSEVVQV 343
Query: 424 GERVKVLVVKSMFPD----KISLSIADLESEPGL 453
G+ + VK ++ D +ISLS + ++E GL
Sbjct: 344 GDEI---AVKVLYVDPERKRISLSKREADAEGGL 374
>gi|433608430|ref|YP_007040799.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
gi|407886283|emb|CCH33926.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
Length = 498
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +K+ +EP++ E GGL
Sbjct: 85 VVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGL 144
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 145 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 200
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 201 QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 258
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 259 EVGQEVTVEVLDVDMERERVSLSLKATQEDP 289
>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
Length = 495
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +K+ +EP++ E GGL
Sbjct: 85 VVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGL 144
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 145 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 200
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 201 QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 258
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 259 EVGQEVTVEVLDVDMERERVSLSLKATQEDP 289
>gi|254876014|ref|ZP_05248724.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842035|gb|EET20449.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 556
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLQ 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|380302401|ref|ZP_09852094.1| 30S ribosomal protein S1 [Brachybacterium squillarum M-6-3]
Length = 494
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + QIK+ + + E GGL
Sbjct: 77 VVEVGDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDEGVVTGRVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAW 368
+ I GLR FLP + L + +L+ VG+ + +I ++++ N+++LS R E
Sbjct: 137 IVDI-GLRGFLPAS--LVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQ 193
Query: 369 ATL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
+ + L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVE 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++VKV V+ M +++SLS+ + +P
Sbjct: 252 VGQKVKVEVLDVDMDRERVSLSLKATQEDP 281
>gi|239624552|ref|ZP_04667583.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
1_7_47_FAA]
gi|239520938|gb|EEQ60804.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
1_7_47FAA]
Length = 258
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W + Q+ + ++VK +E GG++T +E +RAF+P ++L + +L++ G+ +
Sbjct: 58 WAQFAQMMEDKTVVKVKISEAVKGGVVTSLEEVRAFIPASQLSTEY--VEKLEDWQGKYV 115
Query: 347 YVQITRINEDTNDLILSEREA----------WATLNLREGTLLEGTVKKIYPYGAQIRIG 396
I ++ + L+LS RE + G ++EGTV I PYGA I++
Sbjct: 116 ECVIITVDPEKKRLVLSGREVERGKKEAEKQARMAQFKAGDVVEGTVDSIKPYGAFIKL- 174
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVS 456
D GLLHIS +S R+ +L EG+ VKV ++ S K+SLS+ L + +
Sbjct: 175 DEGVDGLLHISQISTQRIKHPGAVLTEGQTVKVKIL-STDNGKLSLSMRALAEQ----TA 229
Query: 457 DKEVHIIFLF 466
D+E H F +
Sbjct: 230 DQEAHETFDY 239
>gi|260589442|ref|ZP_05855355.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
gi|260540187|gb|EEX20756.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
Length = 250
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 16/174 (9%)
Query: 285 MAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVG 343
+ W ++ Q+K+ EV GG++ +EG+RAF+P ++L L+ V N + +K
Sbjct: 48 LIWDKLEQMKEDKTEFEVSVEGIVKGGVIAYVEGIRAFIPVSKLALNYVENPEDFLKKT- 106
Query: 344 RRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQI 393
+ V++ ++E N L+LS +E +++ G+++EGTV+ + YGA I
Sbjct: 107 --ITVRVFEVDEQENRLVLSAKEILKEKADAEKRSKIDDIKVGSIVEGTVESLQTYGAFI 164
Query: 394 RIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
+GD SGL+H+S +S R+ S +L+ G+ VK V+K+ KISLS+ L
Sbjct: 165 DLGD-GISGLVHVSQISEKRIKSPKAVLSIGDTVKAKVIKNE-DGKISLSMKAL 216
>gi|313893418|ref|ZP_07826990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442059|gb|EFR60479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 158 str. F0412]
Length = 632
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|269797892|ref|YP_003311792.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
DSM 2008]
gi|269094521|gb|ACZ24512.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
DSM 2008]
Length = 632
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|406674200|ref|ZP_11081411.1| ribosomal protein S1 [Bergeyella zoohelcum CCUG 30536]
gi|423317311|ref|ZP_17295216.1| ribosomal protein S1 [Bergeyella zoohelcum ATCC 43767]
gi|405581444|gb|EKB55473.1| ribosomal protein S1 [Bergeyella zoohelcum ATCC 43767]
gi|405584611|gb|EKB58501.1| ribosomal protein S1 [Bergeyella zoohelcum CCUG 30536]
Length = 590
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ LS ++ AW +V ++ + E + GG++ + G+ AFLP +++
Sbjct: 108 TGQLQLSHKKARTLKAWDKVNELHESGEIVNGFVKSRTKGGMIVDVFGIEAFLPGSQI-- 165
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S + + L +G +LE
Sbjct: 166 DVKPIKDYDQFVGKTMEFKVVKINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLE 225
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
GTVK I YG I +G + GL+HI+++S +RV S++L +G+ VKV+++ F D
Sbjct: 226 GTVKNITSYGVFIDLGGVD--GLIHITDLSWSRVNHPSEILEDGQTVKVVILD--FDDEK 281
Query: 439 -KISLSIADLESEP 451
+I L + LE P
Sbjct: 282 TRIQLGMKQLEPHP 295
>gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Syntrophobotulus glycolicus DSM 8271]
gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Syntrophobotulus glycolicus DSM 8271]
Length = 662
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G P+LS RR A + + + E I+ E GGLL + G+R F+P +++ +
Sbjct: 359 GHPVLSKRRANEIKAREVLAKAAETKEEIQAVAVEVVKGGLLVDL-GMRGFVPASQI--Q 415
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEG 381
+ +L + VG+ + ++I +E L+LS++ A ++EG +++G
Sbjct: 416 PDFVADLNQFVGQTLRLRIIEFDEGKKKLVLSQKAILAEEREQEKEKLFATIKEGDVVQG 475
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V+++ +GA I +G + GLLH+S+M+ +RV++ SD++N G+ V+V ++ +I
Sbjct: 476 VVRRLTDFGAFIDLGGVD--GLLHVSDMAFSRVSNPSDIVNIGDEVEVQIISVDQSKGRI 533
Query: 441 SLSIADLESEP 451
SL + L++ P
Sbjct: 534 SLGLKQLKTNP 544
>gi|221236638|ref|YP_002519075.1| 30S ribosomal protein S1 [Caulobacter crescentus NA1000]
gi|220965811|gb|ACL97167.1| SSU ribosomal protein S1P [Caulobacter crescentus NA1000]
Length = 569
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
G+ V+ G + F E L + G ++S + R+ AW R+ + NEP+
Sbjct: 68 GKATVKAGDTVEVFLERLENAM-GEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRV 126
Query: 309 TGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GG + G AFLP +++ R V + L +G+ I +++ ++++S R
Sbjct: 127 KGGFTVDLGGASAFLPGSQVDIRPVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAI 183
Query: 366 --EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA A L+EG + EG VK I YGA + +G + GLLH+++MS RV
Sbjct: 184 LEEARAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVNHP 241
Query: 418 SDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
S +L G+ VKV +VK + PD +ISL + L+S+P
Sbjct: 242 SQVLAVGDTVKVQIVK-INPDTQRISLGMKQLQSDP 276
>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
Length = 487
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q+K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKENDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKNRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V++ + +++SLS+ + +P
Sbjct: 251 QVGDEVTVEVLEVDLNRERVSLSLKATQEDP 281
>gi|238019394|ref|ZP_04599820.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
gi|237864093|gb|EEP65383.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
Length = 632
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGDNYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|324997170|ref|ZP_08118282.1| 30S ribosomal protein S1 [Pseudonocardia sp. P1]
Length = 502
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +K+ +EP+E E GGL+ I GLR FLP + L
Sbjct: 101 GRLILSKKRAQYERAWGTIEALKEADEPVEGTVIEVVKGGLILDI-GLRGFLPAS--LVE 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ VGR++ +I ++++ N+++LS R AW LN L+ G + +
Sbjct: 158 MRRVRDLQPYVGRKIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLQRGQVRK 216
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V + +GA + +G + GL+H+S +S + S+++ G+ V V V+ + ++
Sbjct: 217 GVVSSVVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRER 274
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 275 VSLSLKATQEDP 286
>gi|294793636|ref|ZP_06758773.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
gi|294455206|gb|EFG23578.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
Length = 632
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G +++G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVIKGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|427720049|ref|YP_007068043.1| RNA binding S1 domain-containing protein [Calothrix sp. PCC 7507]
gi|427352485|gb|AFY35209.1| RNA binding S1 domain protein [Calothrix sp. PCC 7507]
Length = 299
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++++ ++ + V+ T N GG+ I LR F+P++ LL R
Sbjct: 96 GQVTLSRKQLEIQQIWERLTEMQENSQTVTVRVTGVNKGGVTVDILSLRGFIPRSHLLER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW--ATLNLRE-GTLLEGTVKKIYP 388
+N LK G + V IN +N LILS+R A ++ +L E G L+EG + I P
Sbjct: 156 -DNLEGLK---GHNLTVGFLEINRSSNKLILSQRLATRSSSFSLLELGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + S LLHI +S+ + S+ + G+ +K +++ +++LS L
Sbjct: 212 FGVFVDL--EGISALLHIKQVSQKFIESLEKVFQIGQPIKAVIIDLDEGKGRVALSTRVL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|374993841|ref|YP_004969340.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus orientis DSM 765]
gi|357212207|gb|AET66825.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus orientis DSM 765]
Length = 662
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 109/192 (56%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R+ + A R+ +I + E I+ + E GGL+ + GLR F+P +++ +
Sbjct: 357 GHTVLSKRKADEEGAKERLEKIAESKEEIQAEVVEVVKGGLVVDV-GLRGFVPASQI--Q 413
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATL-------NLREGTLLEG 381
V +L + +G+ + +++ + ++LS++ E L +L++G +++G
Sbjct: 414 VGYVEDLNQFLGQTLRLRMLDFDPAKRKVVLSQKVILEEERALKRTQLLESLKDGDVVKG 473
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--K 439
TV++I +GA I IG + GLLHIS+M+ TR+ SD+L+ G+ V+V V+K + P K
Sbjct: 474 TVRRIADFGAFIDIGGVD--GLLHISDMAYTRIKHPSDMLSVGDEVEVQVLK-IEPQSGK 530
Query: 440 ISLSIADLESEP 451
ISL + L+ P
Sbjct: 531 ISLGLKQLKESP 542
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATL--NLREGTLLEGTVKKIYPYGAQIRI 395
VG + VQ+ +I + + L ++ W+ + N G+++ G V +I +GA + +
Sbjct: 513 VGDEVEVQVLKIEPQSGKISLGLKQLKESPWSQVGGNYPVGSIVNGKVVRITSFGAFVTL 572
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSI 444
G+ GL+HIS ++ RV V D++ G+ V V++ +K ISLSI
Sbjct: 573 GE-GVDGLVHISQLADHRVNKVEDVVKVGDMVTAKVMECKPEEKRISLSI 621
>gi|302388400|ref|YP_003824222.1| RNA binding S1 domain-containing protein [Clostridium
saccharolyticum WM1]
gi|302199028|gb|ADL06599.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
Length = 310
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 22/206 (10%)
Query: 250 PGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
PG + T TV+ A+ G +LS + ++AW ++ + VK E
Sbjct: 81 PGDEI--TATVVSAD----DGEGNIVLSRKLANDRLAWEKLGSMLSDRTIARVKIEEIVK 134
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369
GG + +EG+R F+P ++L +L E G+ + V + +E+ L+LS RE A
Sbjct: 135 GGAVAYLEGIRGFIPASKLAGEY--VEDLDEYNGKVIEVTVITADEENKKLVLSGREP-A 191
Query: 370 TLNLRE-----------GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
+ +E GT++EGTV + YGA I + ++ SGLLHIS +S R+
Sbjct: 192 LMKQKEETSKKIEKCQVGTVMEGTVDSLKDYGAFINL-ENGLSGLLHISQISSQRIKHPG 250
Query: 419 DLLNEGERVKVLVVKSMFPDKISLSI 444
+L EG+ VKV ++ S+ KISLS+
Sbjct: 251 VVLKEGQTVKVKII-SIADHKISLSM 275
>gi|260887148|ref|ZP_05898411.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
ATCC 35185]
gi|260863210|gb|EEX77710.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
ATCC 35185]
Length = 373
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 17/190 (8%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R R +AW + +K+ + ++ + T+ GGL+ + GLR F+P +++ ++
Sbjct: 84 VSKVRADRMVAWKEIEALKEDGQTVQAQITQVVKGGLVASVSGLRGFIPASQM--ELHFV 141
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKK 385
+L VG+ + I+ L+LS R L G ++ GTVK+
Sbjct: 142 KDLSIYVGQTVEALPIEIDIRKQRLVLSRRSLLEEEREKKQEEVFSKLEVGQIIRGTVKR 201
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLS 443
+ YGA I IG + GL HIS+++ RV SD+L+ G+ V V VK+ P+ +ISLS
Sbjct: 202 LVEYGAFIDIGGVD--GLAHISDLAWHRVKQPSDVLSVGDEVDVY-VKNFDPETKRISLS 258
Query: 444 IADLESEPGL 453
+ D +P L
Sbjct: 259 VKDTMRDPWL 268
>gi|119513349|ref|ZP_01632384.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119461989|gb|EAW42991.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 284
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W R+ ++ + + ++V+ T N GG+ I LR F+P++ L R
Sbjct: 80 GQVTLSRKQLEIQQVWERLTEMNEGGQTVQVRVTGVNKGGVTVDILSLRGFIPRSHLAER 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N LK G+ + V IN +TN LILS+R A + + L+ L+EG V I P
Sbjct: 140 -DNLEALK---GQSLTVAFLEINRNTNKLILSQRLATRSSSFSLLQLNQLVEGRVTGIKP 195
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G I + S LLHI +S+ + S+ + G+ +K +++ ++++S L
Sbjct: 196 FG--IFVDLDGLSALLHIKQVSQKYIESLEKVFQIGQTIKAVIIDLDEGKGRVAISTRVL 253
Query: 448 ESEPG 452
E+ PG
Sbjct: 254 ENFPG 258
>gi|407452560|ref|YP_006724285.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-CH-1]
gi|403313544|gb|AFR36385.1| Ribosomal protein S1 [Riemerella anatipestifer RA-CH-1]
Length = 610
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ LS ++ AW +V Q + E + GG++ + G+ AFLP +++
Sbjct: 128 TGQLQLSHKKARTLKAWDKVNQYHESGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQI-- 185
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S +++ L +G +LE
Sbjct: 186 DVKPIKDYDQYVGKTMEFKVVKINPEFKNVVVSHKALIEADIEDQKKEIIAQLEKGQVLE 245
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK- 439
GTVK I YG I +G + GL+HI+++S +RV +++L +G+ VKV+++ DK
Sbjct: 246 GTVKNITSYGVFIDLGGVD--GLVHITDLSWSRVNHPTEILEDGQTVKVVIL-DFDEDKT 302
Query: 440 -ISLSIADLESEP 451
I L + LE+ P
Sbjct: 303 RIQLGMKQLEAHP 315
>gi|386322231|ref|YP_006018393.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-GD]
gi|442315037|ref|YP_007356340.1| Ribosomal protein S1 [Riemerella anatipestifer RA-CH-2]
gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD]
gi|441483960|gb|AGC40646.1| Ribosomal protein S1 [Riemerella anatipestifer RA-CH-2]
Length = 603
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ LS ++ AW +V Q + E + GG++ + G+ AFLP +++
Sbjct: 121 TGQLQLSHKKARTLKAWDKVNQYHESGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQI-- 178
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S +++ L +G +LE
Sbjct: 179 DVKPIKDYDQYVGKTMEFKVVKINPEFKNVVVSHKALIEADIEDQKKEIIAQLEKGQVLE 238
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK- 439
GTVK I YG I +G + GL+HI+++S +RV +++L +G+ VKV+++ DK
Sbjct: 239 GTVKNITSYGVFIDLGGVD--GLVHITDLSWSRVNHPTEILEDGQTVKVVIL-DFDEDKT 295
Query: 440 -ISLSIADLESEP 451
I L + LE+ P
Sbjct: 296 RIQLGMKQLEAHP 308
>gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
Length = 692
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 11/187 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ AW + + E + K +N GGL + G+ F+P +++ +
Sbjct: 361 GNVSLSTRRVEGMKAWKELSDKFENEELVHGKVISFNKGGLTVEVNGVNGFVPASQIATY 420
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATLN-----LREGTLLEGTVKK 385
LK+ VG ++I I+E N L+LS ++ A L+ L EG +++G V +
Sbjct: 421 F--VKNLKKFVGEEWDLKIISIDERKNRLVLSRKDVLEAELDDLWDELEEGQVVKGKVAR 478
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ +GA + + + GLLH+S+++ TRV SD+LN G+ ++V ++K + ++ISL
Sbjct: 479 LTDFGAFVEV--NGLDGLLHVSDIAWTRVEHPSDVLNVGDEIEVKILKLNKEKNRISLGR 536
Query: 445 ADLESEP 451
L +P
Sbjct: 537 KQLIEKP 543
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369
G + GL L +++ +RV + +++ VG + V+I ++N++ N + L ++
Sbjct: 483 GAFVEVNGLDGLLHVSDIAWTRVEHPSDVL-NVGDEIEVKILKLNKEKNRISLGRKQLIE 541
Query: 370 T-----LNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+N + G ++EG V + +GA + + D GL+H+S +S V SD LN
Sbjct: 542 KPFEKFVNEHQVGDVVEGKVVNLLDFGAFVEVADG-VEGLVHVSEISWDHVEKPSDELNV 600
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESEP 451
G+ ++V ++ S+ D K+ LSI L+ P
Sbjct: 601 GDTIEVKII-SIDKDEEKVGLSIKALKEAP 629
>gi|317121948|ref|YP_004101951.1| RNA binding S1 domain-containing protein [Thermaerobacter
marianensis DSM 12885]
gi|315591928|gb|ADU51224.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
12885]
Length = 598
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS RR + AW +R+ + EPIEV E GGL+ G+RAF+P + +
Sbjct: 274 LLSHRRAVEREAWDALRRAYEAGEPIEVPVVEQVKGGLVCDA-GVRAFMPASHV--ERGY 330
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTVK 384
+L VG + +I + + +ILS +E +L EG + G VK
Sbjct: 331 VADLSHYVGTTVRAKIIEFDRNKRRVILSRKELLEEEARRRAEETLASLEEGQVRTGVVK 390
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
+ +GA I +G + GLLH+S M R+ DLL EG+ ++V V++ +ISLS
Sbjct: 391 GLTDFGAFIDLGGVD--GLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLRVDRERGRISLS 448
Query: 444 IADLESEP 451
+ +L +P
Sbjct: 449 LKELMPDP 456
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 341 KVGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V++ R++ + + LS +E WA R G ++GTV ++ P+GA +R
Sbjct: 426 KEGDTIQVKVLRVDRERGRISLSLKELMPDPWADAEQRYPVGATVKGTVVRLVPFGAFVR 485
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSI 444
+ + GL+HIS ++ RV S +++ EG++V+V V++ D +ISLS+
Sbjct: 486 L-EPGVEGLVHISQLADHRVESPDEVVQEGQQVEVRVLRVQPEDRRISLSM 535
>gi|383753845|ref|YP_005432748.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365897|dbj|BAL82725.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 354
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 17/196 (8%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + R +AW + I + E ++ + GGL+ + GLR F+P +++ ++
Sbjct: 88 ILSKVKADRMVAWKDMEAIMERGETVQATINQVVKGGLVASVNGLRGFIPASQM--ELHF 145
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVK 384
+L G+ + +I I+ L+LS R+ + L+ T++ GTVK
Sbjct: 146 VKDLSVYAGQTVECEIIEIDVHKQRLVLSRRKLLEAVRAEKEDEVFSTLQPDTIVRGTVK 205
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISL 442
+I YGA I IG + GL HIS+++ RV SD+L G+ + V VKS+ + +ISL
Sbjct: 206 RIVDYGAFIDIGGVD--GLAHISDLAWNRVKHPSDVLEVGQELDVY-VKSIDQEAKRISL 262
Query: 443 SIADLESEPGLFVSDK 458
S+ D +P L ++K
Sbjct: 263 SVKDTMRDPWLDNAEK 278
>gi|416999072|ref|ZP_11939741.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ACS-068-V-Sch12]
gi|333977225|gb|EGL78084.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ACS-068-V-Sch12]
Length = 632
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|294791775|ref|ZP_06756923.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
gi|294457005|gb|EFG25367.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
Length = 632
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G +++G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVIKGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|282848928|ref|ZP_06258318.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ATCC 17745]
gi|282581433|gb|EFB86826.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ATCC 17745]
Length = 632
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ V++ G + A ++ P+ LS RL + W V + ++ +E I K +
Sbjct: 331 AKDVLKNGDEIKAVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIP 390
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ ++ LR F+P ++ V+ L VG ++ I+E N L+LS R
Sbjct: 391 AGLVVTVKSLRGFIPLSQ--GDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLE 448
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A A N+ G +G V+KI PYGA + IG GLLHIS++S ++ V D
Sbjct: 449 VERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIG--GIEGLLHISDISWQKIKKVED 506
Query: 420 LLNEGERVKV-LVVKSMFPDKISLSIADLESEPGLFVSDKEVHI 462
+L+ G+ ++V L +K+SLS+ L P V+++ +H+
Sbjct: 507 VLSVGQEIEVKLQSFDAESNKLSLSLKALSKSP-WDVAEETLHV 549
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG+ + V++ + ++N L LS + W A L G ++ G V ++ YGA + +
Sbjct: 510 VGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAV 569
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445
D + GLLHIS +++ R V D LN G+ V+V ++ S+ D+ L +A
Sbjct: 570 ND-DIQGLLHISQITKQRNAKVEDYLNRGQEVEVKII-SLNKDEKKLGLA 617
>gi|399090255|ref|ZP_10753989.1| ribosomal protein S1 [Caulobacter sp. AP07]
gi|398028178|gb|EJL21700.1| ribosomal protein S1 [Caulobacter sp. AP07]
Length = 570
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 33/267 (12%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET 257
GT++ V+ L E DF + D+ E +++ + G+ + A G S VE
Sbjct: 30 GTVVKGIVVGL---EKDFAIIDVGLKTEGRVLQKEFGVDETGKATIKVGDS------VE- 79
Query: 258 GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
+F E L L G ++S + R+ AW R+ + NEP+ GG +
Sbjct: 80 ---VFLERLENAL-GEAVISREKAKREEAWTRLEGVYAKNEPVMGAIVGRVKGGFTVDLG 135
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP +++ R V + L +G+ I +++ ++++S R EA A
Sbjct: 136 GASAFLPGSQVDIRPVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQR 192
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
L+EG + EG VK I YGA + +G + GLLH+++MS RV S +L G+
Sbjct: 193 TELVSQLQEGEIREGVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVNHPSQVLAVGDT 250
Query: 427 VKVLVVKSMFPD--KISLSIADLESEP 451
VKV +VK + PD +ISL + L+S+P
Sbjct: 251 VKVQIVK-INPDTQRISLGMKQLQSDP 276
>gi|335357280|ref|ZP_08549150.1| 30S ribosomal protein S1 [Lactobacillus animalis KCTC 3501]
Length = 397
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 26/215 (12%)
Query: 255 VETGTVLFAEVLGRTLS----GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG 310
++ G VL V+ + S G LLS RRL + W + + + E I V T+ G
Sbjct: 67 IKVGDVLDLVVISKIGSDKEGGSYLLSQRRLEARKVWDEIEKKFEAGETITVPVTQIVKG 126
Query: 311 GLLTRIEGLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITRINEDTNDLILS----- 363
GL+ G+R F+P A ++S V +F + K G+ + ++I I N LILS
Sbjct: 127 GLVVD-AGVRGFVP-ASMVSDHFVEDFNQYK---GQELELKIVEIEPSENRLILSHKEIV 181
Query: 364 --EREAW---ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
EREA L G +L+G V ++ +GA I +G + GL+H+S +S RV S
Sbjct: 182 QQEREAKKQEVMSQLAAGDVLDGKVARLTNFGAFIDLGGVD--GLVHVSEISYERVGKPS 239
Query: 419 DLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
D+L GE VKV V+ ++ P D+ISLSI +P
Sbjct: 240 DVLKVGEDVKVKVL-AVDPEKDRISLSIKQTLPQP 273
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIR 394
KVG + V++ ++ + + + LS ++ W + + EG +L+G VK++ +GA +
Sbjct: 243 KVGEDVKVKVLAVDPEKDRISLSIKQTLPQPWDNIEEKVAEGDVLDGKVKRLTSFGAFVE 302
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEP 451
+ GL+HIS +S + + +++L G+ VKV V+ D +++LSI L+ +P
Sbjct: 303 VF-PGVEGLVHISQISHKHIATPNEVLTSGQDVKVKVLNVNGADRRLALSIKALQEKP 359
>gi|320107706|ref|YP_004183296.1| RNA-binding S1 domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319926227|gb|ADV83302.1| RNA binding S1 domain protein [Terriglobus saanensis SP1PR4]
Length = 594
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 114/216 (52%), Gaps = 18/216 (8%)
Query: 255 VETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLT 314
V+ G L V GR G LS R+ + W ++ I T GGL
Sbjct: 99 VKQGDTLMVSVKGRDPDGYYGLSLFRVAQPKDWSSLQAAFADGTNIVGTVTAVVKGGLHV 158
Query: 315 RIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLIL-----SEREAWA 369
+ G+RAFLP + S + E+++ VG+ + +IT+++ D+++ +E EA
Sbjct: 159 DV-GVRAFLPASR--SGARDAAEMEKLVGQEILCRITKLDVVEEDVVIDRRVVTEEEALK 215
Query: 370 TLNLR-----EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
+LR EG +++GTV+ + YGA I +G + GLLH+S+M+ +R+ + SD+L G
Sbjct: 216 GRDLRFAAMQEGAIVDGTVRSLADYGAFIDLGGID--GLLHVSDMAWSRIGNPSDVLEVG 273
Query: 425 ERVKVLVVKSMFPD--KISLSIADLESEPGLFVSDK 458
+ V+V V+K + P+ +ISL + L+ P V++K
Sbjct: 274 QTVQVKVLK-IDPESRRISLGLKQLQPHPWDDVAEK 308
>gi|16127817|ref|NP_422381.1| 30S ribosomal protein S1 [Caulobacter crescentus CB15]
gi|13425331|gb|AAK25549.1| ribosomal protein S1 [Caulobacter crescentus CB15]
Length = 565
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
G+ V+ G + F E L + G ++S + R+ AW R+ + NEP+
Sbjct: 64 GKATVKAGDTVEVFLERLENAM-GEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRV 122
Query: 309 TGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GG + G AFLP +++ R V + L +G+ I +++ ++++S R
Sbjct: 123 KGGFTVDLGGASAFLPGSQVDIRPVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAI 179
Query: 366 --EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA A L+EG + EG VK I YGA + +G + GLLH+++MS RV
Sbjct: 180 LEEARAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVNHP 237
Query: 418 SDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
S +L G+ VKV +VK + PD +ISL + L+S+P
Sbjct: 238 SQVLAVGDTVKVQIVK-INPDTQRISLGMKQLQSDP 272
>gi|313205786|ref|YP_004044963.1| 30S ribosomal protein s1p [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|383485103|ref|YP_005394015.1| 30S ribosomal protein s1 [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|416111215|ref|ZP_11592472.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
gi|380459788|gb|AFD55472.1| SSU ribosomal protein s1p [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
Length = 593
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ LS ++ AW +V Q + E + GG++ + G+ AFLP +++
Sbjct: 111 TGQLQLSHKKARTLKAWDKVNQYHESGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQI-- 168
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S +++ L +G +LE
Sbjct: 169 DVKPIKDYDQYVGKTMEFKVVKINPEFKNVVVSHKALIEADIEDQKKEIIAQLEKGQVLE 228
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK- 439
GTVK I YG I +G + GL+HI+++S +RV +++L +G+ VKV+++ DK
Sbjct: 229 GTVKNITSYGVFIDLGGVD--GLVHITDLSWSRVNHPTEILEDGQTVKVVIL-DFDEDKT 285
Query: 440 -ISLSIADLESEP 451
I L + LE+ P
Sbjct: 286 RIQLGMKQLEAHP 298
>gi|160936761|ref|ZP_02084127.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
BAA-613]
gi|158440253|gb|EDP17999.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
BAA-613]
Length = 258
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W + Q+ + ++VK E GG++T +E +RAF+P ++L +L++ G+ +
Sbjct: 58 WAQFAQMMEDRTVVKVKIAEAVKGGVVTSLEEVRAFIPASQL--STEYVEKLEDWQGKYV 115
Query: 347 YVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTVKKIYPYGAQIRIG 396
I ++ + L+LS RE + G ++EGTV I PYGA I++
Sbjct: 116 EAVIITVDPEKKRLVLSGREVEKEKKEAQKKERMAQFKAGDVVEGTVDSIKPYGAFIKL- 174
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVS 456
D GLLHIS +S R+ S +L EG+ VKV ++ S K+SLS+ L + +
Sbjct: 175 DDGVDGLLHISQISTQRIKHPSAVLTEGQTVKVKIL-SAQEGKLSLSMKVLAEQQ----A 229
Query: 457 DKEVHIIFLF 466
DKE H F +
Sbjct: 230 DKEEHETFDY 239
>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
Length = 501
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK+ + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA----------TLNLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R+ L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
TV I +GA + +G + GL+H+S +S + S+++ G++V V V+ M ++I
Sbjct: 215 TVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|167626886|ref|YP_001677386.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596887|gb|ABZ86885.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 561
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 85 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 144
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + EG++L+
Sbjct: 145 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLQ 201
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 202 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIYVKVIKFDKEKQR 259
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 260 ISLGIKQLGEDPWLNIANE 278
>gi|134302709|ref|YP_001122677.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752625|ref|ZP_16189645.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
AS_713]
gi|421754490|ref|ZP_16191461.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
831]
gi|421758219|ref|ZP_16195075.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700103]
gi|421760044|ref|ZP_16196867.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70102010]
gi|424675368|ref|ZP_18112275.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70001275]
gi|134050486|gb|ABO47557.1| Ribosomal protein S1 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409084514|gb|EKM84687.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
831]
gi|409084662|gb|EKM84831.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
AS_713]
gi|409089635|gb|EKM89670.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70102010]
gi|409090074|gb|EKM90098.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700103]
gi|417434123|gb|EKT89095.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70001275]
Length = 556
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEINVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|387823727|ref|YP_005823198.1| 30S ribosomal protein S1 [Francisella cf. novicida 3523]
gi|328675326|gb|AEB28001.1| SSU ribosomal protein S1p [Francisella cf. novicida 3523]
Length = 556
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|330839082|ref|YP_004413662.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
gi|329746846|gb|AEC00203.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
Length = 378
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 17/190 (8%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R R +AW + +K+ + ++ + T+ GGL+ + GLR F+P +++ ++
Sbjct: 89 VSKVRADRMVAWKEIEALKEDGQTVQAQITQVVKGGLVASVSGLRGFIPASQM--ELHFV 146
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKK 385
+L VG+ + I+ L+LS R L G ++ GTVK+
Sbjct: 147 KDLSIYVGQTVEALPIEIDIRKQRLVLSRRSLLEEEREKKQEEVFSKLEVGQIIRGTVKR 206
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLS 443
+ YGA I IG + GL HIS+++ RV SD+L+ G+ V V VK+ P+ +ISLS
Sbjct: 207 LVEYGAFIDIGGVD--GLAHISDLAWHRVKQPSDVLSVGDEVDVY-VKNFDPETKRISLS 263
Query: 444 IADLESEPGL 453
+ D +P L
Sbjct: 264 VKDTMRDPWL 273
>gi|373464323|ref|ZP_09555862.1| putative ribosomal protein S1 [Lactobacillus kisonensis F0435]
gi|371762525|gb|EHO51054.1| putative ribosomal protein S1 [Lactobacillus kisonensis F0435]
Length = 409
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS+R+L + W + + + +E I K ++ GGL+ G+R F+P A ++S
Sbjct: 89 GSFVLSSRQLETRKVWDELAEKSKNDETITAKVSQAVKGGLVVDA-GVRGFIP-ASMISD 146
Query: 332 --VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTL 378
V+N + K G+ + ++I I+ N LILS ERE L EG +
Sbjct: 147 HFVDNLNQFK---GQELELKIIEIDPVENRLILSHKAIVQAEKAEEREKLMQ-TLHEGDV 202
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP- 437
+EGTV ++ +GA + +G GL+H+S ++ RV SD+L G++VKV V+ F
Sbjct: 203 VEGTVARLTSFGAFVDLG--GMDGLVHVSQIAYERVDKPSDVLKVGQQVKVKVLSVDFDR 260
Query: 438 DKISLSIADLESEP 451
++ISLSI EP
Sbjct: 261 NRISLSIKQTLPEP 274
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSER----EAWATLNLRE--GTLLEGTVKKIYPYGAQIR 394
KVG+++ V++ ++ D N + LS + E W + + G++LEGTVK++ +GA +
Sbjct: 244 KVGQQVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPVGSVLEGTVKRLVDFGAFVE 303
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ GL+HIS +S + + D+L GE ++V V+ + P+ +++LSI L P
Sbjct: 304 VF-PGVEGLVHISQISHEHIATPGDVLKVGETIQVKVL-DVDPERKRLALSIKALTDAP 360
>gi|339635169|ref|YP_004726810.1| 30S ribosomal protein S1P [Weissella koreensis KACC 15510]
gi|420161165|ref|ZP_14667936.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
gi|338854965|gb|AEJ24131.1| SSU ribosomal protein S1P [Weissella koreensis KACC 15510]
gi|394745915|gb|EJF34733.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
Length = 432
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 15/188 (7%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R+L + AW + ++ +E T+ GGL+ + G+R F+P + + +R
Sbjct: 91 ILSKRQLEARRAWEEIASKYNEDDIVEAPVTQVVKGGLVVDVAGVRGFIPASMIENRF-- 148
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTVK 384
+L + G+ + QI IN + LILS + + L G ++EG V
Sbjct: 149 VQDLNQYKGQTVKAQIIEINVAESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVA 208
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444
++ +GA I +G + GL+H+S +S RV+ SD+L+ GE VKV V+ + P+K +S+
Sbjct: 209 RMTNFGAFIDLGGVD--GLVHVSEISYERVSQPSDVLSVGEDVKVKVL-GLDPEKERISL 265
Query: 445 ADLESEPG 452
+ ++PG
Sbjct: 266 SIKATQPG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
LS + +LS R A RV + + + +E K G + G+ + +E+
Sbjct: 176 LSRKAVLSAER---SEALKRVFEELTVGDIVEGKVARMTNFGAFIDLGGVDGLVHVSEIS 232
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGT 382
RV+ +++ VG + V++ ++ + + LS + W A N EGT+LEGT
Sbjct: 233 YERVSQPSDVL-SVGEDVKVKVLGLDPEKERISLSIKATQPGPWDSAAQNAPEGTVLEGT 291
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
V+++ +GA + + GL+H+S +S V + SD+L G++V+V V+ + P+ ++
Sbjct: 292 VRRVVDFGAFVEVF-PGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVL-DVNPERQRL 349
Query: 441 SLSIADLESEPG 452
SLSI L P
Sbjct: 350 SLSIKALTEAPA 361
>gi|118496773|ref|YP_897823.1| 30S ribosomal protein S1 [Francisella novicida U112]
gi|194324082|ref|ZP_03057857.1| 30S ribosomal protein S1 [Francisella novicida FTE]
gi|208779955|ref|ZP_03247298.1| ribosomal protein S1 [Francisella novicida FTG]
gi|254372138|ref|ZP_04987631.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375284|ref|ZP_04990764.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
gi|385792087|ref|YP_005825063.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118422679|gb|ABK89069.1| 30S ribosomal protein S1 [Francisella novicida U112]
gi|151569869|gb|EDN35523.1| 30S ribosomal protein S1 [Francisella novicida GA99-3549]
gi|151573002|gb|EDN38656.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
gi|194321979|gb|EDX19462.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
FTE]
gi|208743959|gb|EDZ90260.1| ribosomal protein S1 [Francisella novicida FTG]
gi|328676233|gb|AEB27103.1| SSU ribosomal protein S1p [Francisella cf. novicida Fx1]
Length = 556
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|387929557|ref|ZP_10132234.1| 30S ribosomal protein S1 [Bacillus methanolicus PB1]
gi|387586375|gb|EIJ78699.1| 30S ribosomal protein S1 [Bacillus methanolicus PB1]
Length = 379
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 18/196 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R++ + AW + + + E E + + GGL+ + G+R F+P + + V
Sbjct: 80 ILSKRKIDAEKAWDDLEKKFESGEIFEAEIKDVVKGGLVVDL-GVRGFVPASLVEDHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE----------GTLLEGTV 383
+F++ K G+ + +I ++++ N LILS R +R+ G +LEGT+
Sbjct: 139 DFSDYK---GKTLTFKIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESLQPGQVLEGTI 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
++I +GA + IG + GL+HIS +S V SD++ EG++V V V+ D+ISL
Sbjct: 196 QRITDFGAFVDIGGID--GLVHISQLSHQHVEKPSDVVEEGQKVNVKVLSVDRDKDRISL 253
Query: 443 SIADLESEPGLFVSDK 458
SI + P +S+K
Sbjct: 254 SIKETLPGPWTNISEK 269
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 101/187 (54%), Gaps = 13/187 (6%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
LS R ++ ++ +K + Q Q+ E + T++ G I G+ + ++L
Sbjct: 164 LSHRAVVEEEKIRQKQSLLESLQPGQVLEGTIQRITDF---GAFVDIGGIDGLVHISQLS 220
Query: 330 SR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGT 382
+ V +++ E+ G+++ V++ ++ D + + LS +E W ++ + +G++LEGT
Sbjct: 221 HQHVEKPSDVVEE-GQKVNVKVLSVDRDKDRISLSIKETLPGPWTNISEKAPKGSILEGT 279
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
VK++ YGA + + GL+HIS +S + + ++L EG+ V+V V+ + ++S
Sbjct: 280 VKRLISYGAFVEVF-PGVEGLVHISQISHKHIGTPHEVLKEGQTVQVKVLDVNEEQQRLS 338
Query: 442 LSIADLE 448
LSI +L+
Sbjct: 339 LSIKELQ 345
>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
Length = 687
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 17/190 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LSTRR+ W + Q + +E + + +N GGL + G+ F+P +++ +
Sbjct: 358 GNVALSTRRVEGMKVWQELAQKAENDELVHGEVVSFNKGGLTVNVNGVNGFVPASQIATY 417
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA--------WATLNLREGTLLEGT 382
V NF K+ VG + ++I I+E N L+LS ++ W L EG +++G
Sbjct: 418 FVKNF---KKFVGEQWDLKIISIDERKNRLVLSRKDVVEEELDNLWDE--LEEGQVVKGK 472
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V ++ +GA + + + GLLH+S+++ +RV SD+L+ G+ ++V ++K + ++IS
Sbjct: 473 VARLTDFGAFVEV--NGLDGLLHVSDIAWSRVEHPSDVLSVGDEIEVKILKLNQEKNRIS 530
Query: 442 LSIADLESEP 451
L L +P
Sbjct: 531 LGRKQLLEKP 540
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---- 365
G + GL L +++ SRV + +++ VG + V+I ++N++ N + L +
Sbjct: 480 GAFVEVNGLDGLLHVSDIAWSRVEHPSDVL-SVGDEIEVKILKLNQEKNRISLGRKQLLE 538
Query: 366 ---EAWATLNLRE-GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
EA+A N E G ++ G V + +GA + + D GL+H+S +S V SD L
Sbjct: 539 KPFEAFA--NHHEVGDVVTGKVVNLLDFGAFVEVADG-VEGLVHVSEISWEHVEKPSDEL 595
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
N G+ ++V ++ +K+ LSI L+ P
Sbjct: 596 NVGDEIEVKIISIDKEEEKVGLSIKALKEAP 626
>gi|56707348|ref|YP_169244.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110669818|ref|YP_666375.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC198]
gi|254370028|ref|ZP_04986035.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC033]
gi|254874185|ref|ZP_05246895.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716548|ref|YP_005304884.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725231|ref|YP_005317417.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
TI0902]
gi|385793945|ref|YP_005830351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
NE061598]
gi|421754800|ref|ZP_16191764.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700075]
gi|56603840|emb|CAG44816.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320151|emb|CAL08199.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC198]
gi|151568273|gb|EDN33927.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC033]
gi|254840184|gb|EET18620.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158480|gb|ADA77871.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
NE061598]
gi|377826680|gb|AFB79928.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
TI0902]
gi|377828225|gb|AFB78304.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
TIGB03]
gi|409090280|gb|EKM90301.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700075]
Length = 556
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|291547610|emb|CBL20718.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5]
Length = 300
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 250 PG---RPVVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFT 305
PG + V+ G + A VL R G LLS +AW R+++++ E ++V
Sbjct: 58 PGFNIKEAVQPGDEVQAMVLRRDDGQGNILLSRADAADVLAWDRLKELQDSGEVLDVVVK 117
Query: 306 EWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365
GG + +EG+R F+P + L TE+ + + + V++ ++ L+LS R
Sbjct: 118 GIVNGGAIAYVEGVRGFIPASRLALEFVEDTEV--FLNKPIQVRVIEADKAKKRLVLSAR 175
Query: 366 EAW----------ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT 415
E N++ G + EGTV+ + PYGA + +G+ SGL+HIS + R+
Sbjct: 176 EILRERAEVEKRNKISNIQVGFVTEGTVESLQPYGAFVELGN-GVSGLVHISQICEKRIR 234
Query: 416 SVSDLLNEGERVKVLVVKSMFPDKISLSI 444
S++L+ G++VKV V+ ++ K+SLSI
Sbjct: 235 KPSEVLSVGDKVKVKVI-AIKDGKLSLSI 262
>gi|357054555|ref|ZP_09115637.1| hypothetical protein HMPREF9467_02609 [Clostridium clostridioforme
2_1_49FAA]
gi|355384155|gb|EHG31224.1| hypothetical protein HMPREF9467_02609 [Clostridium clostridioforme
2_1_49FAA]
Length = 258
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W R Q+ + ++VK E GG++T +E +RAF+P ++L + +L++ G+ +
Sbjct: 58 WARFAQMMEDRTVVKVKIAEAVKGGVVTSLEEVRAFIPASQLST--EYVEKLEDWQGKYV 115
Query: 347 YVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTVKKIYPYGAQIRIG 396
I ++ + L+LS RE + G ++EGTV I PYGA I++
Sbjct: 116 EAVIITVDPEKKRLVLSGREVEKEKKEAQKKERMAQFKAGDIVEGTVDSIKPYGAFIKL- 174
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVS 456
D GLLH+S +S R+ S +L EG+ VKV ++ S K+SLS+ L + +
Sbjct: 175 DDGVDGLLHVSQISTQRIKHPSAVLTEGQTVKVKIL-STQEGKLSLSMKVLAEQQ----A 229
Query: 457 DKEVHIIFLF 466
D+E H F +
Sbjct: 230 DREEHETFDY 239
>gi|393201458|ref|YP_006463300.1| 30S ribosomal protein S1 [Solibacillus silvestris StLB046]
gi|327440789|dbj|BAK17154.1| ribosomal protein S1 [Solibacillus silvestris StLB046]
Length = 380
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R++ AW +++ + E E + + GGL+ + G+R F+P A L+ V
Sbjct: 80 VLSKRKVDALHAWDDLKEKFESGEVFEAEVKDVVKGGLVVDL-GVRGFVP-ASLVEDYFV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F + K G+ + ++IT ++++ LILS R + N+ +G +LEGT
Sbjct: 138 EDFEDYK---GKTLRLKITELDKEKGRLILSHRAVLDEEKASKKQQVIQNIHQGDMLEGT 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DKIS 441
V+++ +GA I +G + GL+HIS ++ V +S +L EG+ V V V+ P +++S
Sbjct: 195 VQRLAKFGAFIDLGGID--GLVHISQVAHEHVEDISTVLQEGQSVTVKVLSVDIPNERVS 252
Query: 442 LSIAD 446
LSI D
Sbjct: 253 LSIKD 257
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G +L GTVK++ +GA + + GL+HIS +S +T+ ++L +G+ V+V V++
Sbjct: 273 GAILTGTVKRLVTFGAFVEVF-PGVEGLVHISQISHKHITTPHEVLKDGQEVEVKVLEVN 331
Query: 436 FPDK-ISLSIADLESE 450
+K ++LSI L+ +
Sbjct: 332 EAEKRLALSIKALQED 347
>gi|327399484|ref|YP_004340353.1| RNA-binding S1 domain-containing protein [Hippea maritima DSM
10411]
gi|327182113|gb|AEA34294.1| RNA binding S1 domain protein [Hippea maritima DSM 10411]
Length = 517
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 255 VETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
V+ G + A RT G +LS R W++V+Q + + I+ K GG
Sbjct: 65 VKVGDEIEAVFFNRTDPDGFEILSKAAADRIKGWNKVKQAYKEGKTIKGKINSVVNGGFT 124
Query: 314 TRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------- 365
+I+G AFLP +++ L + N+ VG+ ++ INE + +LS +
Sbjct: 125 VKIDGFLAFLPGSQVELKPIKNYPSY---VGKEFEFKVVNINESKRNAVLSRKVLLEEEE 181
Query: 366 -----EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
E W ++EG +L+G VK I YG + +G + GL+HI++MS +RV+ S+L
Sbjct: 182 RQRQQELWEK--IKEGAILKGRVKNITDYGVFVDLGGVD--GLVHITDMSYSRVSHPSEL 237
Query: 421 LNEGERVKVLVVK---SMFPDKISLSIADLESEP 451
+N + V+V ++K + KI L + L +P
Sbjct: 238 VNLDDEVEVKIIKIEENEGKKKIYLGMKQLSEDP 271
>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
27678]
gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
Length = 490
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 491
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|310642586|ref|YP_003947344.1| RNA binding s1 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|386041648|ref|YP_005960602.1| 30S ribosomal S1-like protein [Paenibacillus polymyxa M1]
gi|309247536|gb|ADO57103.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2]
gi|343097686|emb|CCC85895.1| 30S ribosomal S1-like protein [Paenibacillus polymyxa M1]
Length = 408
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 110/194 (56%), Gaps = 20/194 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ Q+ + E EV + GG++ + GLR F+P A ++ R V
Sbjct: 92 VLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GLRGFIP-ASMVERHFV 149
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGT 382
+F++ K GR + V + ++ + N +ILS+++ L+EG + GT
Sbjct: 150 EDFSDYK---GRTLRVVVKELDRENNKVILSQKDVLEAEFEANKLKVMAELKEGQEIVGT 206
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ T V SD ++EG++VKV V+K + P+K +
Sbjct: 207 VQRLTQFGAFVDVGGVD--GLVHVSEIAWTHVDKPSDAVSEGDQVKVKVLK-VDPEKGKI 263
Query: 443 SIADLESEPGLFVS 456
S++ ++PG + S
Sbjct: 264 SLSMKAAQPGPWES 277
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W A ++ G VK++ +GA + I
Sbjct: 246 GDQVKVKVLKVDPEKGKISLSMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIA 305
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
GL+HIS +S + + ++L EG+ VKV +++ M P ++SLSI + E P
Sbjct: 306 -PGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILE-MNPSEKRVSLSIKETEEAP 360
>gi|374324516|ref|YP_005077645.1| RNA binding s1 domain-containing protein [Paenibacillus terrae
HPL-003]
gi|357203525|gb|AET61422.1| RNA binding s1 domain protein [Paenibacillus terrae HPL-003]
Length = 408
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 110/194 (56%), Gaps = 20/194 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ Q+ + E EV + GG++ + GLR F+P A ++ R V
Sbjct: 92 VLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GLRGFIP-ASMVERHFV 149
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGT 382
+F++ K GR + V + ++ + N +ILS+++ L+EG + GT
Sbjct: 150 EDFSDYK---GRTLRVVVKELDRENNKVILSQKDVLEAEFEANKLKVMAELKEGQEIVGT 206
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ T V SD ++EG++VKV V+K + P+K +
Sbjct: 207 VQRLTQFGAFVDVGGVD--GLVHVSEIAWTHVDKPSDAVSEGQQVKVKVLK-VDPEKGKI 263
Query: 443 SIADLESEPGLFVS 456
S++ ++PG + S
Sbjct: 264 SLSMKAAQPGPWES 277
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ +++ + + LS + A W A G ++ G VK++ +GA + I
Sbjct: 246 GQQVKVKVLKVDPEKGKISLSMKAAQPGPWESAAGQFNNGDVVTGVVKRLVNFGAFVEIA 305
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
S GL+HIS +S + + ++L EG+ VKV +++ M P ++SLSI + E P
Sbjct: 306 -SGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILE-MNPTEKRVSLSIKETEEAP 360
>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
Length = 491
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
Length = 491
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
L2-32]
gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
Length = 490
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|260893017|ref|YP_003239114.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ammonifex
degensii KC4]
gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
KC4]
Length = 654
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 57/299 (19%)
Query: 173 GDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGK 232
G+ V G VV N+ ++ V++GA T+ V+PL + C++ E V +
Sbjct: 297 GEIVRGTVVEINQGEVLVDIGAK------TEGVIPLRE----LCCCEVSSPHEVVKVGDE 346
Query: 233 MGI--VKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRV 290
+ + VK +DA GR +LS R AW ++
Sbjct: 347 IDVFVVKAEDA-----------------------------EGRIILSKARADAIAAWKKL 377
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQI 350
+ P+E E GGL+ + G+RAFLP + L ++ L +G+++ ++
Sbjct: 378 AEAFANGTPVEGIVREVVKGGLIVDV-GVRAFLPAS--LVDISYVENLSTYLGQKVRAKV 434
Query: 351 TRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIGDSNR 400
++ ++LS + L+EG +++G V++I P+GA I +G +
Sbjct: 435 IELDRSRKKVVLSRKAVLEEEAERRRRETWEKLQEGAVVKGVVRRIVPFGAFIDLGGVD- 493
Query: 401 SGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
GLLH+S ++ RV S ++L EG+ ++V V+K +K+SLS L +P V +K
Sbjct: 494 -GLLHVSEIAWHRVNSPDEVLKEGQEIEVKVIKVDRENEKVSLSRKALLPDPWEKVPEK 551
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTE-LKEKVGRRMYVQITRINEDTNDLILSER--- 365
G + G+ L +E+ RVN+ E LKE G+ + V++ +++ + + LS +
Sbjct: 484 GAFIDLGGVDGLLHVSEIAWHRVNSPDEVLKE--GQEIEVKVIKVDRENEKVSLSRKALL 541
Query: 366 -EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
+ W + + G+L+E V ++ P+GA + + + GL+HIS+ + V D+L
Sbjct: 542 PDPWEKVPEKYPVGSLVEVKVVRLAPFGAFVEL-EPGVEGLIHISHFADWHVEKPEDVLK 600
Query: 423 EGERVKVLVV 432
EG+ V V V+
Sbjct: 601 EGDVVTVRVI 610
>gi|168056001|ref|XP_001780011.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668616|gb|EDQ55220.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 298
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 281 LFRKMA-WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS-RV-----N 333
L +K A W + +++ + + N+GGLL R L+ FLP +++ S R+
Sbjct: 1 LLQKTADWQKAQKVMEDGTIHRGRVDACNSGGLLVRFGSLQGFLPFSQMDSGRIPKDGSK 60
Query: 334 NFTEL-KEKVGRRMYVQITRINEDTNDLILSEREAWATLNLR---EGTLLEGTVKKIYPY 389
E+ KE VG + V++ +NE LI SER+A NLR EG++ G V + +
Sbjct: 61 ALAEIAKELVGDLVSVKMIEVNESERRLIFSERQAVLEENLRLVEEGSVYNGKVNSVTDF 120
Query: 390 GAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
GA + + G S+ SGL+HIS +S V + DLL EG+ V+V V++ +++LSI
Sbjct: 121 GAFVDLALPDGTSSVSGLVHISELSWDPVRNPRDLLEEGQMVRVKVIQLDKERKRLALSI 180
Query: 445 ADLESEP 451
LE++P
Sbjct: 181 KQLETDP 187
>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 491
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
55813]
gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
Length = 491
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|197103656|ref|YP_002129033.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1]
gi|196477076|gb|ACG76604.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1]
Length = 569
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S + R+ AW R+ + + NEP+ GG + G AFLP +++
Sbjct: 90 GEAVISREKARREEAWTRLEGVYEKNEPVMGAIVGRVKGGFTVDLGGASAFLPGSQV--D 147
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA------TLNLREGTLLEG 381
+ ++ +GR I +++ ++++S R EA A L+EG + EG
Sbjct: 148 IRPVRDVGPLMGREQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQEGEVREG 207
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--K 439
VK I YGA + +G + GLLH+++MS RV S +L G+ VKV +VK + P+ +
Sbjct: 208 VVKNITDYGAFVDLGGID--GLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVK-INPETQR 264
Query: 440 ISLSIADLESEP 451
ISL + L+S+P
Sbjct: 265 ISLGMKQLQSDP 276
>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
Length = 490
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|167644076|ref|YP_001681739.1| 30S ribosomal protein S1 [Caulobacter sp. K31]
gi|167346506|gb|ABZ69241.1| ribosomal protein S1 [Caulobacter sp. K31]
Length = 569
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 251 GRPVVETGTVL--FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
G+ ++ G + F E L L G ++S + R+ AW R+ + NEP+
Sbjct: 68 GKATIKVGDSVEVFLERLENAL-GEAVISREKAKREEAWTRLEGVYAKNEPVMGAIVGRV 126
Query: 309 TGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GG + G AFLP +++ R V + L +G+ I +++ ++++S R
Sbjct: 127 KGGFTVDLGGASAFLPGSQVDIRPVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAI 183
Query: 366 --EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA A L+EG + EG VK I YGA + +G + GLLH+++MS RV
Sbjct: 184 LEEARAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVNHP 241
Query: 418 SDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
S +L G+ VKV +VK + PD +ISL + L+S+P
Sbjct: 242 SQVLAVGDTVKVQIVK-INPDTQRISLGMKQLQSDP 276
>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
JDM301]
gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 491
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|433641768|ref|YP_007287527.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070008]
gi|432158316|emb|CCK55607.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070008]
Length = 481
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++GT+ +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|423610022|ref|ZP_17585883.1| ribosomal protein S1 [Bacillus cereus VD107]
gi|401249339|gb|EJR55645.1| ribosomal protein S1 [Bacillus cereus VD107]
Length = 382
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FTE K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTEYK---GKALAVKIVELDREKNRVILSHKAVVEQELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVASEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + S++L G+ V V V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPSEVLEMGQEVTVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|317128562|ref|YP_004094844.1| RNA binding S1 domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315473510|gb|ADU30113.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 382
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 107/186 (57%), Gaps = 22/186 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS + + + AW+ + +E E + GGL+ + G+R F+P A L+ R V
Sbjct: 81 ILSKKEVIAEKAWNELEHKLSTSEIFEAVVADVVKGGLVVDV-GVRGFIP-ASLVERHFV 138
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---------ATL-NLREGTLLEGT 382
+F++ K G+ + +++ ++++ N LILS+R TL +++ G +LEG
Sbjct: 139 EDFSDYK---GKTLRLKVVEMDKEKNKLILSQRAVLDEEENEKKRKTLTSIQVGDVLEGK 195
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
V+++ +GA + IG + GL+HIS M+ V + S++++EG+++KV V+ + PD +I
Sbjct: 196 VQRLTDFGAFVDIGGVD--GLVHISQMAHHHVDAPSEVVSEGDQIKVKVL-GVDPDNERI 252
Query: 441 SLSIAD 446
SLSI D
Sbjct: 253 SLSIKD 258
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLREGTLLEGTVKKIYPYGAQIRIGDS 398
G ++ V++ ++ D + LS ++ W +N+ G ++EG VK++ +GA + + D
Sbjct: 235 GDQIKVKVLGVDPDNERISLSIKDTLPGPWELVNINPGDVIEGKVKRLVSFGAFVEVAD- 293
Query: 399 NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSI 444
GL+HIS ++ + + ++L EGE V V+ DK ISLSI
Sbjct: 294 GVEGLVHISQIANRHIGTPGEVLKEGENVSAKVLDVNLADKRISLSI 340
>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
Length = 490
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|433630724|ref|YP_007264352.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070010]
gi|433634681|ref|YP_007268308.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070017]
gi|432162317|emb|CCK59693.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070010]
gi|432166274|emb|CCK63767.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070017]
Length = 481
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++GT+ +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
Length = 490
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|322437186|ref|YP_004219398.1| 30S ribosomal protein S1 [Granulicella tundricola MP5ACTX9]
gi|321164913|gb|ADW70618.1| ribosomal protein S1 [Granulicella tundricola MP5ACTX9]
Length = 671
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 29/259 (11%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET-----GTVLFA-----EVL---GRTL 270
AEE +V G + + D AI G G ++ GT FA EV+ T
Sbjct: 106 AEEVIVTGTLVKITDKHAIIDIGLKAEGLLALDQVNNPDGTPKFAVGDQIEVVVEREETH 165
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
G ++S + R W + P++ GGL I G++AFLP +++
Sbjct: 166 GGGYIVSHEKALRHKVWDVLEAAANSKTPVKGMVVSRVKGGLTVDI-GIKAFLPGSQI-- 222
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----------AWATLNLREGTLLE 380
V L VG + V++ ++N+ ++++S +E A L EG++L
Sbjct: 223 EVRPVRNLDGYVGTEIEVRVIKLNKKRGNVVISRKELLEEDQNAKKAVTLATLEEGSVLT 282
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
GTVK + YGA + +G GLLHI++MS R+T DL+N G+ ++V V+K +
Sbjct: 283 GTVKNLTDYGAFVDLG--GLDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKFDKDKQR 340
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL L +P L +++
Sbjct: 341 VSLGFKQLTPDPWLDATER 359
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKS 434
G ++EG V+ + +GA I I D GL+H+SN+S T R+ S++L +GE+V+ +V+
Sbjct: 450 GAIIEGRVRNLTDFGAFIEIEDG-IDGLVHVSNLSWTKRIKHPSEVLKKGEKVRAIVL-G 507
Query: 435 MFPDKISLSIADLESEPGLF 454
+ P+ LS+ + +P ++
Sbjct: 508 VEPENRRLSLGVKQLQPDVW 527
>gi|385998404|ref|YP_005916702.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
gi|344219450|gb|AEN00081.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
Length = 481
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++GT+ +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
Length = 490
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|147677954|ref|YP_001212169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Pelotomaculum thermopropionicum SI]
gi|146274051|dbj|BAF59800.1| hypothetical protein PTH_1619 [Pelotomaculum thermopropionicum SI]
Length = 667
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 16/198 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS + + AW R+ + EP+E E GGLL + G+RAFLP A L+ R
Sbjct: 361 GKLILSKEKADAEKAWGRLEEALNSGEPVEGIVREVVKGGLLVDV-GVRAFLP-ASLVER 418
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL------NLREGTLLEG 381
+L + +G+ + ++ +N +ILS + E +A L L+EG +++G
Sbjct: 419 -GYVEDLSKYLGQVVKARVIELNRGRKKVILSRKAVLEEEYARLRQETLDTLQEGQVVKG 477
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
TV+++ +GA + IG + GLLHIS MS R+ S+++ G+ ++++V+K +KI
Sbjct: 478 TVRRLTQFGAFVDIGGVD--GLLHISEMSWHRINHPSEVVKVGDELEIMVLKLDRENEKI 535
Query: 441 SLSIADLESEPGLFVSDK 458
SL + + P V +K
Sbjct: 536 SLGLKQVLPNPWDSVQEK 553
>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 1435]
gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
Haarlem]
gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
94_M4241A]
gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
gi|339631686|ref|YP_004723328.1| 30S ribosomal protein S1 [Mycobacterium africanum GM041182]
gi|375296577|ref|YP_005100844.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
gi|385991029|ref|YP_005909327.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
gi|385994631|ref|YP_005912929.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
gi|392386301|ref|YP_005307930.1| rpsA [Mycobacterium tuberculosis UT205]
gi|392432788|ref|YP_006473832.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
gi|397673484|ref|YP_006515019.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
gi|422812616|ref|ZP_16861000.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
gi|424803967|ref|ZP_18229398.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
gi|424947350|ref|ZP_18363046.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
gi|6226090|sp|O06147.1|RS1_MYCTU RecName: Full=30S ribosomal protein S1
gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
Haarlem]
gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
94_M4241A]
gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
gi|339294585|gb|AEJ46696.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
gi|339298222|gb|AEJ50332.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
gi|339331042|emb|CCC26714.1| putative ribosomal protein S1 RPSA [Mycobacterium africanum
GM041182]
gi|358231865|dbj|GAA45357.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
gi|378544852|emb|CCE37127.1| rpsA [Mycobacterium tuberculosis UT205]
gi|379027853|dbj|BAL65586.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|392054197|gb|AFM49755.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
gi|395138389|gb|AFN49548.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
gi|440581096|emb|CCG11499.1| putative RIBOSOMAL protein S1 RPSA [Mycobacterium tuberculosis
7199-99]
gi|444895138|emb|CCP44394.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
Length = 481
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++GT+ +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 491
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
Length = 402
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S V
Sbjct: 180 VEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKAGQDVKVKVI-GIDNDRHRISLSIKQTEPSPF 273
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + K G+ + V++ I+ D + + LS ++ AT NL EG + EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
gi|378771371|ref|YP_005171104.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
gi|449063688|ref|YP_007430771.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
gi|341601555|emb|CCC64228.1| probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|356593692|gb|AET18921.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
gi|449032196|gb|AGE67623.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
Length = 481
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++GT+ +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
Length = 487
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +K+ +EP+E E GGL+ I GLR FLP + L
Sbjct: 101 GRLILSKKRAQYERAWGTIEALKEADEPVEGTVIEVVKGGLILDI-GLRGFLPAS--LVE 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ VGR++ +I ++++ N+++LS R AW LN L G + +
Sbjct: 158 MRRVRDLQPYVGRKIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLARGQVRK 216
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V + +GA + +G + GL+H+S +S + S+++ G+ V V V+ + ++
Sbjct: 217 GVVSSVVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRER 274
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 275 VSLSLKATQEDP 286
>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 705
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS + + W ++ Q+ + +E I+ + TE GGL+ + L+ F+P + +
Sbjct: 388 GQLILSKKWADKDKQWEQLEQLMENDEEIKAQVTEEVKGGLVVDLGQLQGFIPASHV--D 445
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLEG 381
++ +L + VG + ++ ++ N ++LS E++ + EG +++G
Sbjct: 446 IHYVPDLSKYVGEELRLKPIELDRSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDG 505
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DK 439
TVK++ +GA I IG + GL HIS +S +R+ L GE VKV V+ S+ P ++
Sbjct: 506 TVKRLTDFGAFIDIGGID--GLCHISQISHSRIDHPESELETGENVKVKVL-SLDPENER 562
Query: 440 ISLSIADLESEP 451
ISLSI + + +P
Sbjct: 563 ISLSIKEAQPDP 574
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA- 369
G I G+ +++ + E + + G + V++ ++ + + LS +EA
Sbjct: 514 GAFIDIGGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPD 573
Query: 370 -----TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
+ G +++G V + +GA I I GL HIS +S V D++NEG
Sbjct: 574 PFETFMKQYKSGDIVQGKVVRTVNFGAFIEIT-PGVEGLCHISQLSDDHVAKTQDVVNEG 632
Query: 425 ER--VKVLVVKSMFPDKISLSIADLE 448
++ VK+L + K+SLSI + +
Sbjct: 633 DQVTVKILSIDDQ-QKKVSLSIKEAQ 657
>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 407
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 22/191 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ +E +V + GGL+ + G+R F+P A ++ R V
Sbjct: 95 VLSKRAIDGEKAWEELQAKFDNSEAFDVVIADVVKGGLVADV-GVRGFIP-ASMVERHFV 152
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGT 382
+F++ K GR + V++ I+ + N +ILS +E +L G LEGT
Sbjct: 153 EDFSDYK---GRSIKVKVKEIDRENNKVILSAKEVLEADFEANKQKIIASLEPGQELEGT 209
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ P+GA I IG + GL+H+S +S V D ++EG+ V+V V+K KIS
Sbjct: 210 VQRLTPFGAFIDIGGID--GLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGKIS 267
Query: 442 LSIADLESEPG 452
LS+ ++PG
Sbjct: 268 LSMK--AAQPG 276
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ +++ + LS + A W A + G ++ GTV++I +GA I I
Sbjct: 249 GQSVRVKVLKVDPAAGKISLSMKAAQPGPWDSAINSFNTGDIVTGTVRRIVDFGAFIEIA 308
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
GL+HIS ++ V + ++L EG+ VK ++ + ++SLSI + E P
Sbjct: 309 -PGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIKETEEAP 363
>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 490
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTVEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIEAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|421766691|ref|ZP_16203460.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
gi|407624717|gb|EKF51450.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
Length = 407
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 27/216 (12%)
Query: 260 VLFAEVLGRTLSGRP--LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ +++G+ G LLS +RL + AW + + E + VK T+ GGL
Sbjct: 71 LVIKQIVGKDAEGANVYLLSLKRLEARKAWTELEG--KEGEILTVKVTKDVKGGLSVDYN 128
Query: 318 GLRAFLPKAELLSRVNNF--TELKEKVGRRMYVQITRINEDTNDLILSER---------- 365
G+R F+P S ++ + + K+ VG+ + +I IN N ILS R
Sbjct: 129 GVRGFIPA----SMIDTYFVKDTKKFVGQEIEAKIIEINASENRFILSRRAVVEAETIEM 184
Query: 366 --EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
EA+A LN EG ++EGTV ++ +GA + +G + GL+H+S +S RV SD++
Sbjct: 185 RKEAFAQLN--EGDIVEGTVSRVTNFGAFVDLGGID--GLVHVSELSHNRVKRPSDVVKP 240
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
G++V+V ++K ++SLS+ ++ P V +K
Sbjct: 241 GDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEK 276
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G ++ V+I +++E+ L LS + W + + G+ +EGTVK++ +GA +
Sbjct: 239 KPGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--RVKVLVVKSMFPDKISLSIADLESEPG 452
+ GL+H+S +S RV + D+L G+ VKVL VK ++ISLSI LE P
Sbjct: 299 LF-PGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPE-EERISLSIKALEEAPA 356
>gi|392398275|ref|YP_006434876.1| 30S ribosomal protein S1 [Flexibacter litoralis DSM 6794]
gi|390529353|gb|AFM05083.1| ribosomal protein S1 [Flexibacter litoralis DSM 6794]
Length = 610
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 30/269 (11%)
Query: 209 YDKEMDFLLCDLKKD-----AEEFMVRGKMGIVKDDDAIAMSGGSGPGR---------PV 254
Y E L DL ++ AE +V G + V D +AI G G P
Sbjct: 27 YQDERQQELADLYEETLTAFAENELVTGTIVGVTDREAIVNIGHKSDGLVSLSEFRDLPE 86
Query: 255 VETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
++ G + V + +G+ LLS R+ AW ++ Q Q +E IE GGL+
Sbjct: 87 LKAGDQVTVYVEKQEDANGQILLSRRKAMALQAWKKIEQSHQGDEVIEGVIKRRTKGGLI 146
Query: 314 TRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS---------E 364
I G+ AFLP +++ V + V ++M +++ +IN +++++S E
Sbjct: 147 ADIFGIEAFLPGSQI--DVKPIRDFDIYVDKKMELKVVKINYANDNVVVSHKILIEKDLE 204
Query: 365 REAWATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
++ L NL G +LEG VK I +GA + +G + GLLHI+++S R++ +++L
Sbjct: 205 KQRLQILDNLERGQVLEGVVKNITNFGAFVDLGGVD--GLLHITDISWGRISHPNEILEL 262
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEP 451
+++ V+V+ +ISL + L+ P
Sbjct: 263 DQKLNVVVLDFDEDKKRISLGMKQLQEHP 291
>gi|347521866|ref|YP_004779437.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|385833250|ref|YP_005871025.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|420143919|ref|ZP_14651407.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
gi|343180434|dbj|BAK58773.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|343182403|dbj|BAK60741.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|391855371|gb|EIT65920.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
Length = 407
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 27/216 (12%)
Query: 260 VLFAEVLGRTLSGRP--LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ +++G+ G LLS +RL + AW + + E + VK T+ GGL
Sbjct: 71 LVIKQIVGKDAEGANVYLLSLKRLEARKAWTELEG--KEGEILTVKVTKDVKGGLSVDYN 128
Query: 318 GLRAFLPKAELLSRVNNF--TELKEKVGRRMYVQITRINEDTNDLILSER---------- 365
G+R F+P S ++ + + K+ VG+ + +I IN N ILS R
Sbjct: 129 GVRGFIPA----SMIDTYFVKDTKKFVGQEIEAKIIEINASENRFILSRRAVVEAETIEM 184
Query: 366 --EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
EA+A LN EG ++EGTV ++ +GA + +G + GL+H+S +S RV SD++
Sbjct: 185 RKEAFAQLN--EGDIVEGTVSRVTNFGAFVDLGGID--GLVHVSELSHNRVKRPSDVVKP 240
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
G++V+V ++K ++SLS+ ++ P V +K
Sbjct: 241 GDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEK 276
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G ++ V+I +++E+ L LS + W + + G+ +EGTVK++ +GA +
Sbjct: 239 KPGDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--RVKVLVVKSMFPDKISLSIADLESEPG 452
+ GL+H+S +S RV + D+L G+ VKVL VK ++ISLSI LE P
Sbjct: 299 LF-PGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPE-EERISLSIKALEEAPA 356
>gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
Length = 403
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S V
Sbjct: 180 IEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKAGQDVKVKVI-GIDDDRHRISLSIKQTEPSPF 273
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L + VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|302874418|ref|YP_003843051.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
743B]
gi|307690976|ref|ZP_07633422.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
743B]
gi|302577275|gb|ADL51287.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B]
Length = 308
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G+ LLS +L R+ +W ++++ E EV E GG T + G+RAF+P ++L +S
Sbjct: 86 GKILLSKVKLDRESSWDELQRLHNTQEIFEVTVKEAVKGGATTELYGVRAFIPASQLSMS 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------------WATLN--LREG 376
V + + KV + V++ +N+D +ILS +E W +++ R G
Sbjct: 146 YVEDISAFVNKV---LKVKLIELNKDNRRVILSAKEVERDELSKKMDNLWESIDDKYRVG 202
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SM 435
++E V K+ +GA +++ + GL+H S +S RV + D L EG+ +KV ++
Sbjct: 203 DIVETKVVKLLKFGAIVKL-EEGVEGLVHNSQISDDRVMNPGDYLKEGQDIKVKILTIDK 261
Query: 436 FPDKISLS 443
KISLS
Sbjct: 262 VQKKISLS 269
>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
Length = 378
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + + AW + E E E GGL+ I G+R F+P + + + V+
Sbjct: 80 VLSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKGGLVVDI-GVRGFIPASLVETHFVD 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTV 383
+F E +++ + V++ ++++ N +ILS R +L+EG +LEGTV
Sbjct: 139 DFAEYQDQT---LTVKVVELDKEKNRVILSHRAVVEEELVQQKENVLESLKEGQVLEGTV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + +G + GL+HIS +S TRV SD++ EG+ VKV V+ ++SL
Sbjct: 196 QRLTDFGAFVDVGGVD--GLVHISQLSHTRVEKPSDVVAEGDAVKVKVLSVDKSTGRVSL 253
Query: 443 SIADLESEPGLFVSDK 458
SI D P +S K
Sbjct: 254 SIKDTLEGPWSNISTK 269
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIRIG 396
G + V++ +++ T + LS ++ W+ ++ LR+G +++GTVK++ +GA + +
Sbjct: 234 GDAVKVKVLSVDKSTGRVSLSIKDTLEGPWSNISTKLRQGDVVDGTVKRLVSFGAFVEVL 293
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESE 450
GL+HIS +S + + ++L+EGE+V V V+ + ++SLSI DLE E
Sbjct: 294 -PGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEE 347
>gi|402834209|ref|ZP_10882813.1| S1 RNA binding domain protein [Selenomonas sp. CM52]
gi|402278788|gb|EJU27843.1| S1 RNA binding domain protein [Selenomonas sp. CM52]
Length = 378
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 17/190 (8%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
+S R R +AW + +K+ + ++ + T+ GGL+ + GLR F+P +++ ++
Sbjct: 89 VSKVRADRMVAWKEIEALKEEGKTVQAQVTQVVKGGLVASVNGLRGFIPASQM--ELHFV 146
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKK 385
+L VG+ + I+ L+LS R L G ++ GTVK+
Sbjct: 147 KDLSIYVGQTVEALPIEIDIRKQRLVLSRRSLLEEEREKKQEEVFSKLEVGQIIRGTVKR 206
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLS 443
+ YGA I IG + GL HIS+++ RV SD+L+ G+ V V VK+ P+ +ISLS
Sbjct: 207 LVEYGAFIDIGGVD--GLAHISDLAWHRVKQPSDVLSVGDEVDVY-VKNFDPETKRISLS 263
Query: 444 IADLESEPGL 453
+ D +P L
Sbjct: 264 VKDTMRDPWL 273
>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
Length = 488
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQELEAKIIELDKHRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 251 AVGDEVTVEVLDVDMDRERVSLSLKATQEDP 281
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V++ ++ D + LS + + W G ++ G V K+ P+GA +R+
Sbjct: 252 VGDEVTVEVLDVDMDRERVSLSLKATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRV 311
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ GL+HIS ++ V ++N GE V V V+ + +ISLS+
Sbjct: 312 -EEGIEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSL 360
>gi|218295918|ref|ZP_03496698.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
gi|218243656|gb|EED10184.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
Length = 530
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 60/304 (19%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL--PLYDKEMDFLLCDLKKDAEEFM 228
+PG + G VV + V++GA G + ++ PL D+E+ LL K +E
Sbjct: 31 RPGQVLTGKVVFVGSEGVAVDIGAKTEGIIPFNQLTEKPLSDEELKGLL----KPGDEVR 86
Query: 229 VRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWH 288
V+ ++K D ETG +L LS +++ W
Sbjct: 87 VQ----VLKVDP---------------ETGQIL--------------LSRKKVEATEHWD 113
Query: 289 RVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMY 347
R++++ + EP+ V E GG++ ++ +RAF+P ++L L R+ N L VG+++
Sbjct: 114 RIQELYEKGEPVTVTVKEKVKGGVVAELDSVRAFIPASQLDLRRIPN---LDAYVGQQLL 170
Query: 348 VQITRINEDTNDLILSER-----------EAWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V+I + ++LS R EA+ +L G ++EGTV + +GA + +G
Sbjct: 171 VKIIEFHRKKGRVLLSRRAVLEEEQKKAKEAFFQ-SLEPGQVVEGTVVDVTDFGAFVNLG 229
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--ISLSIADLESEPGLF 454
+ GL+H S ++ R ++L++G++V+ VV S+ P+K ++LSI L +P
Sbjct: 230 PVD--GLVHRSEITWGRFNHPREVLHKGQKVRAQVV-SVDPEKERVNLSIKALIPDPWST 286
Query: 455 VSDK 458
V++K
Sbjct: 287 VAEK 290
>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
Length = 403
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S V
Sbjct: 180 VEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKAGQDVKVKVI-GIDNDRHRISLSIKQTEPSPF 273
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + K G+ + V++ I+ D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLHEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|319651364|ref|ZP_08005493.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
gi|317396895|gb|EFV77604.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
Length = 379
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R++ +W + + E E + + GGL+ + G+R F+P + + + V
Sbjct: 80 ILSKRKVDAGKSWETLEKKFNDGEVFEAEIKDVVKGGLVVDL-GVRGFVPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ M +I +++D N LILS R + +L+ G +L+GTV
Sbjct: 139 DFTDYK---GKTMTFKIVELDKDKNRLILSHRAVIEEEKGKQKHQVLESLQAGQVLDGTV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
++I +GA + IG + GL+HIS +S V SD++ EG++VKV V+ ++ISL
Sbjct: 196 QRITDFGAFVDIGGID--GLVHISQLSYEHVEKPSDVVEEGQKVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ ++ D + LS +E W ++ + +G+ LEGTVK++ YGA + +
Sbjct: 234 GQKVKVKVLSVDRDNERISLSIKETLPGPWDNISEKAPKGSTLEGTVKRLVSYGAFVEVF 293
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADL 447
GL+HIS ++ + + ++L+EG+ +KV V+ D ++SLSI DL
Sbjct: 294 -PGVEGLVHISQIAHKHIGTPHEVLSEGQEIKVKVLDVNEQDQRLSLSIKDL 344
>gi|355673767|ref|ZP_09059242.1| hypothetical protein HMPREF9469_02279 [Clostridium citroniae
WAL-17108]
gi|354814480|gb|EHE99080.1| hypothetical protein HMPREF9469_02279 [Clostridium citroniae
WAL-17108]
Length = 269
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W + +Q+ ++VK +E GG++T +E +RAF+P ++L +L++ G+ +
Sbjct: 69 WAQFQQMMDDRTVVKVKISEAVKGGVVTTLEEVRAFIPASQL--STEYVEKLEDWQGKYV 126
Query: 347 YVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIG 396
I ++ + L+LS RE + G ++EGTV I PYGA +++
Sbjct: 127 ECIIITVDPEKKRLVLSGREVEREKKEAEKKARMEQFKAGDVVEGTVDSIKPYGAFVKLA 186
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVS 456
D GLLHIS +S R+ +L EG+ VKV ++ SM K+SLS+ L + +
Sbjct: 187 D-GVDGLLHISQISTQRIKHPGAVLTEGQTVKVKIL-SMENGKLSLSMRVLSEQ----TA 240
Query: 457 DKEVHIIFLF 466
++E H F +
Sbjct: 241 EREEHETFDY 250
>gi|41469635|gb|AAS07358.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
sativa Japonica Group]
gi|108712065|gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|218194088|gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Group]
gi|222626154|gb|EEE60286.1| hypothetical protein OsJ_13343 [Oryza sativa Japonica Group]
Length = 379
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 257 TGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI 316
GT E + S P+ R W R + + ++++ N+GGL+ R
Sbjct: 51 AGTTAAQEGASASASAPPVDEARLAQFAADWQAARAERDQGKILKLQVIRANSGGLIVRF 110
Query: 317 EGLRAFLPKAELLSRVNNFTE--------LKEKVGRRMYVQITRINEDTNDLILSEREA- 367
L+ F+P LLS + + K+ VG + V++ +NE+ L+ SE++A
Sbjct: 111 NSLQGFVPN-PLLSPAHWCKDPKRPIQDVTKDLVGSSISVKVVEVNEEERKLVFSEKDAS 169
Query: 368 WATLN--LREGTLLEGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLL 421
W T + ++ G + +G V ++ YGA + + G+ + +GL+HIS +S V V D L
Sbjct: 170 WFTHSSLVKIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFL 229
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKEV 460
NEG+ VKV+VV M +I+LSI LE +P L DK +
Sbjct: 230 NEGDTVKVIVVNIDMEKSRIALSIRQLEEDPLLETLDKVI 269
>gi|229550028|ref|ZP_04438753.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200]
gi|255972809|ref|ZP_05423395.1| SSU ribosomal protein S1P [Enterococcus faecalis T1]
gi|257422631|ref|ZP_05599621.1| 30S ribosomal protein S1 [Enterococcus faecalis X98]
gi|312951481|ref|ZP_07770377.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102]
gi|422693037|ref|ZP_16751052.1| putative ribosomal protein S1 [Enterococcus faecalis TX0031]
gi|422701742|ref|ZP_16759582.1| putative ribosomal protein S1 [Enterococcus faecalis TX1342]
gi|422706685|ref|ZP_16764383.1| putative ribosomal protein S1 [Enterococcus faecalis TX0043]
gi|422727034|ref|ZP_16783477.1| putative ribosomal protein S1 [Enterococcus faecalis TX0312]
gi|229304834|gb|EEN70830.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200]
gi|255963827|gb|EET96303.1| SSU ribosomal protein S1P [Enterococcus faecalis T1]
gi|257164455|gb|EEU94415.1| 30S ribosomal protein S1 [Enterococcus faecalis X98]
gi|310630447|gb|EFQ13730.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102]
gi|315152496|gb|EFT96512.1| putative ribosomal protein S1 [Enterococcus faecalis TX0031]
gi|315155774|gb|EFT99790.1| putative ribosomal protein S1 [Enterococcus faecalis TX0043]
gi|315158059|gb|EFU02076.1| putative ribosomal protein S1 [Enterococcus faecalis TX0312]
gi|315169715|gb|EFU13732.1| putative ribosomal protein S1 [Enterococcus faecalis TX1342]
Length = 403
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + Q Q + IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEEIEQDFQAGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F+E K G+ + +I I N LILS + +L +G ++
Sbjct: 152 HFVADFSEYK---GQTLAFKIIEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG V ++ +GA I +G + GL+H+S ++ V SD L GE V+V ++ S+ PD+
Sbjct: 209 EGKVARLTDFGAFIDLGGVD--GLVHVSEIAHQHVGKPSDALTVGEDVQVKIL-SINPDE 265
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 266 GRISLSIKETLPG 278
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V+I IN D + LS +E W + + GT+L+GTVK++ +GA + +
Sbjct: 250 VGEDVQVKILSINPDEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
GL+HIS +S + + ++L+EG++V+V V++ + P+ +I+LSI LE
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLE-VNPEEHRIALSIKALE 362
>gi|384045064|ref|YP_005493081.1| 30S ribosomal protein S1 [Bacillus megaterium WSH-002]
gi|345442755|gb|AEN87772.1| 30S ribosomal protein S1-like protein [Bacillus megaterium WSH-002]
Length = 384
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + + AW + E E E GGL+ I G+R F+P + + + V+
Sbjct: 86 VLSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKGGLVVDI-GVRGFIPASLVETHFVD 144
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTV 383
+F E +++ + V++ ++++ N +ILS R +L+EG +LEGTV
Sbjct: 145 DFAEYQDQT---LTVKVVELDKEKNRVILSHRAVVEEELVQQKENVLESLKEGQVLEGTV 201
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + +G + GL+HIS +S TRV SD++ EG+ VKV V+ ++SL
Sbjct: 202 QRLTDFGAFVDVGGVD--GLVHISQLSHTRVEKPSDVVAEGDTVKVRVLSVDKSTGRVSL 259
Query: 443 SIADLESEPGLFVSDK 458
SI D P +S K
Sbjct: 260 SIKDTLEGPWSNISTK 275
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIRIG 396
G + V++ +++ T + LS ++ W+ ++ LR+G +++GTVK++ +GA + +
Sbjct: 240 GDTVKVRVLSVDKSTGRVSLSIKDTLEGPWSNISTKLRQGDVVDGTVKRLVSFGAFVEVL 299
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESE 450
GL+HIS +S + + ++L+EGE+V V V+ + ++SLSI DLE E
Sbjct: 300 -PGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEE 353
>gi|308069530|ref|YP_003871135.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
gi|305858809|gb|ADM70597.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
Length = 408
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 110/194 (56%), Gaps = 20/194 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ Q+ + E EV + GG++ + G+R F+P A ++ R V
Sbjct: 92 VLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GMRGFIP-ASMVERHFV 149
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGT 382
+F++ K GR + V + ++ + N +ILS+++ L+EG + GT
Sbjct: 150 EDFSDYK---GRTLRVVVKELDRENNKVILSQKDVLEAEFEANKLKVMAELKEGQEIVGT 206
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ T V SD ++EG++VKV V+K + P+K +
Sbjct: 207 VQRLTQFGAFVDVGGVD--GLVHVSEIAWTHVDKPSDAVSEGDQVKVKVLK-VDPEKGKI 263
Query: 443 SIADLESEPGLFVS 456
S++ ++PG + S
Sbjct: 264 SLSMKAAQPGPWES 277
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W A ++ G VK++ +GA + I
Sbjct: 246 GDQVKVKVLKVDPEKGKISLSMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIA 305
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
GL+HIS +S + + ++L EG+ VKV +++ M P ++SLSI + E P
Sbjct: 306 -PGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILE-MNPSEKRVSLSIKETEEAP 360
>gi|375309056|ref|ZP_09774337.1| RNA binding s1 domain protein [Paenibacillus sp. Aloe-11]
gi|375078365|gb|EHS56592.1| RNA binding s1 domain protein [Paenibacillus sp. Aloe-11]
Length = 408
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 108/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ Q+ + E EV + GG++ + G+R F+P A ++ R V
Sbjct: 92 VLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GVRGFIP-ASMVERHFV 149
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGT 382
+F++ K GR + V + ++ + N +ILS+++ L+EG + GT
Sbjct: 150 EDFSDYK---GRTLRVVVKELDRENNKVILSQKDVLEAEFEANKQKVMAELKEGQEIVGT 206
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ T V SD ++EG++VKV V+K + P+K +
Sbjct: 207 VQRLTQFGAFVDVGGVD--GLVHVSEIAWTHVDKPSDAVSEGDQVKVKVLK-VDPEKGKI 263
Query: 443 SIADLESEPG 452
S++ ++PG
Sbjct: 264 SLSMKAAQPG 273
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W A ++ G VK++ +GA + I
Sbjct: 246 GDQVKVKVLKVDPEKGKISLSMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIA 305
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
GL+HIS +S + + ++L EG+ VKV +++ M P ++SLSI + E P
Sbjct: 306 -PGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILE-MNPSEKRVSLSIKETEEAP 360
>gi|356519893|ref|XP_003528603.1| PREDICTED: LOW QUALITY PROTEIN: 30S ribosomal protein S1,
chloroplastic-like [Glycine max]
Length = 295
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R L +AW R RQ++ + ++ K N GG++ +EGLR F+P LS+++
Sbjct: 71 VLSLRALQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVP----LSQIST 126
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ ++E + + + ++ ++E+ + L+LS R+A A L G+++ G+V+ + PYGA
Sbjct: 127 NSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAF 186
Query: 393 IRIGDSNRSGLLHISNMSR 411
I IG N GLLH +
Sbjct: 187 IDIGGIN--GLLHAXTLGH 203
>gi|386773662|ref|ZP_10096040.1| 30S ribosomal protein S1 [Brachybacterium paraconglomeratum LC44]
Length = 494
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 111/209 (53%), Gaps = 17/209 (8%)
Query: 255 VETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
VE G + A VL + GR +LS +R + AW + QIK+ + + E GGL+
Sbjct: 78 VEVGDEIEALVLQKEDKEGRLILSKKRAQYERAWGSIEQIKEDEGVVTGRVIEVVKGGLI 137
Query: 314 TRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA 369
I GLR FLP + L + +L+ VG+ + +I ++++ N+++LS R E +
Sbjct: 138 VDI-GLRGFLPAS--LVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQS 194
Query: 370 TL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 AVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEV 252
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEP 451
G++VKV V+ M +++SLS+ + +P
Sbjct: 253 GQKVKVEVLDVDMDRERVSLSLKATQEDP 281
>gi|406665703|ref|ZP_11073475.1| 30S ribosomal protein S1 [Bacillus isronensis B3W22]
gi|405386568|gb|EKB45995.1| 30S ribosomal protein S1 [Bacillus isronensis B3W22]
Length = 380
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 20/185 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R++ AW ++ + E E + + GGL+ + G+R F+P A L+ V
Sbjct: 80 VLSKRKVDALHAWDDLKAKFESGEVFEAEVKDVVKGGLVVDL-GVRGFVP-ASLVEDYFV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F + K G+ + ++IT ++++ LILS R + N+ +G +LEGT
Sbjct: 138 EDFEDYK---GKTLRLKITELDKEKGRLILSHRAVLDEEKASKKQQVIQNIHQGDMLEGT 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DKIS 441
V+++ +GA I +G + GL+HIS ++ V +S +L EG+ V V V+ P +++S
Sbjct: 195 VQRLAKFGAFIDLGGID--GLVHISQVAHEHVEDISTVLQEGQSVTVKVLSVDIPNERVS 252
Query: 442 LSIAD 446
LSI D
Sbjct: 253 LSIKD 257
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G +L GTVK++ +GA + + GL+HIS +S +T+ ++L +G+ V+V V++
Sbjct: 273 GAILTGTVKRLVTFGAFVEVF-PGVEGLVHISQISHKHITTPHEVLKDGQEVEVKVLEVN 331
Query: 436 FPDK-ISLSIADLESE 450
+K ++LSI L+ +
Sbjct: 332 EAEKRLALSIKALQED 347
>gi|283778165|ref|YP_003368920.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
6068]
gi|283436618|gb|ADB15060.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
Length = 502
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 24/175 (13%)
Query: 300 IEVKFTEWNTGGLLTRIEG-LRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDT 357
++ K NTGGL I G +R F+P ++ L RV N +L VG+R+ IT NE
Sbjct: 209 VDAKIVAANTGGLECEIAGGVRGFIPASQAGLYRVENLGDL---VGQRITCVITEANERR 265
Query: 358 NDLILSER------------EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLH 405
+++LS R E A++ + G + EG V+KI +GA + +G + GL+H
Sbjct: 266 GNVVLSRRAVLEREKESAKKELMASIAI--GDMREGVVRKIQDFGAFVDMGGID--GLIH 321
Query: 406 ISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPGLFVSDK 458
IS MS R+ S++L EG++V+V + K + P+ KI LS+ + + P + K
Sbjct: 322 ISQMSWDRIKHPSEILTEGQKVRVRIEK-IDPETGKIGLSLRNQQEHPWTGIDQK 375
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 66/109 (60%), Gaps = 8/109 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSER----EAWATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G+++ V+I +I+ +T + LS R W ++ + G++++GTV ++ +GA +++
Sbjct: 340 GQKVRVRIEKIDPETGKIGLSLRNQQEHPWTGIDQKFPVGSIVKGTVSRLAAFGAFVKL- 398
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSI 444
GL+HIS ++ RV +V +++ EG+ V+V ++ D +ISLS+
Sbjct: 399 SPGVEGLIHISELAHNRVYAVQNVVKEGQEVEVKILTVSAEDQRISLSL 447
>gi|115315499|ref|YP_764222.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
OSU18]
gi|169656779|ref|YP_001429450.2| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|115130398|gb|ABI83585.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica
OSU18]
gi|164551847|gb|ABU62494.2| ribosomal protein S1 [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 574
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 98 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 157
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L+ K + +++ +I+ N++++S + N + EG++L+
Sbjct: 158 PIKDVAHLEYK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 214
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 215 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 272
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 273 ISLGIKQLGEDPWLNIANE 291
>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
Length = 401
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 22/216 (10%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R V+ G A V+ G +G S R+ + A+ ++++ + + IE K T
Sbjct: 62 REAVKPGDTFKAYVVRRAGGDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSS 121
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE 366
GGLL + G R FLP A L+S N F ++LK +G+ + V+IT I+ N LILS +E
Sbjct: 122 VRGGLLVDV-GTRGFLP-ASLIS--NRFVSDLKPYIGKTIKVKITEIDPAKNRLILSHKE 177
Query: 367 --------AWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTS 416
A+ + L G ++EG V ++ +GA + IG + GL+HIS +S V
Sbjct: 178 LIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFVDIGGVD--GLVHISEISYKHVDK 235
Query: 417 VSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
SD+L G+ VKV V+ ++ISLSI E P
Sbjct: 236 PSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP 271
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D N + LS ++ AT NL EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQATANLNEGDIIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA + + D + GL+H+S +S V SD+L G++VKV V+ ++ P +IS
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLTVGQKVKVKVL-NVDPSERRIS 347
Query: 442 LSIADLESEPGLFVSDK 458
LSI + E +D+
Sbjct: 348 LSIKQADPENASSSNDR 364
>gi|298491699|ref|YP_003721876.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298233617|gb|ADI64753.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 301
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS ++L + W + Q+++ ++ I+ + T N GG+ + LR F+P++ L R
Sbjct: 96 GQVTLSRKQLEIQHLWDTLTQMQENSQTIQARVTGVNKGGITVEVLSLRGFIPRSHLSER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N LK G+ + +N +T LILSER A + N L G L+EGT+ I P
Sbjct: 156 -DNLEALK---GQTLTAGFLEVNRNTKKLILSERLATRSSNFSLLEVGQLVEGTITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
+G + + S LLHI +S+ + S+ + G+++K +++
Sbjct: 212 FGVFVDL--EGVSALLHIKQVSQKFIESLEKVFQIGQQIKAVII 253
>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
Length = 495
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|220931888|ref|YP_002508796.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
orenii H 168]
gi|219993198|gb|ACL69801.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
orenii H 168]
Length = 678
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS +R + AW R+ + + +E IE + T GGL+ I GLR F+ + +
Sbjct: 368 GNMVLSKKRADFEKAWERILKAYENDEIIEAEVTREVKGGLVVDI-GLRGFVHASHVA-- 424
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEG 381
+ +L + VG+ + +++ + D N+++LS ++ L+EG +++G
Sbjct: 425 IGYVEDLSDYVGKTLRLKVIEVERDKNNVVLSAKKVLEEEREKQKEKTLEELQEGQVVKG 484
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V KI +GA + +G GLLHIS MS R+ S++L EG+ ++V V+ + ++I
Sbjct: 485 KVTKIVDFGAFVDLG--GIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEERI 542
Query: 441 SLSIADLESEP 451
SL + L +P
Sbjct: 543 SLGLKQLLPDP 553
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 81/150 (54%), Gaps = 12/150 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
G + G+ L +E+ R+ + +E+ E+ G+ + V++ +N++ + L ++
Sbjct: 493 GAFVDLGGIEGLLHISEMSWGRIEHPSEVLEE-GQEIEVKVLAVNKEEERISLGLKQLLP 551
Query: 367 -AWATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + EG ++ GT+ KI +GA + I ++ GL+HIS +S V + ++++
Sbjct: 552 DPWEEFAKKHYEGEVVSGTITKIVDFGAFMEI-ENGIEGLIHISQLSHRHVKTPDEVVSV 610
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESEP 451
GE +K ++ ++ P+ ++ LSI LE +P
Sbjct: 611 GEEIKAEII-NIDPEQKRVGLSIKALEEQP 639
>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 415
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 21/233 (9%)
Query: 244 MSGGSGPGRPVVETGTVLFAEVL-GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEV 302
M+ S R ++ G VL V+ GR +LS + ++ +W ++ + + I
Sbjct: 86 MTSLSSEERAELKVGDVLLVTVVQTEDAEGRIVLSIDKARQEKSWRALQVNHEAGDVIHA 145
Query: 303 KFTEWNTGGLLTRIEGLRAFLPKAELLSR-----VNNFTELKEKVGRRMYVQITRINEDT 357
T +N GGLL + G+R F+P +++ S V +++ + VG+ + ++I IN
Sbjct: 146 AVTNYNKGGLLVNLSGVRGFVPSSQVSSVSRGSDVQKQSDMAKLVGQTLPLKIIEINRSR 205
Query: 358 NDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHIS 407
N LILSER+A + L G + G V + +GA + IG ++ GL+H+S
Sbjct: 206 NRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLCDFGAFVDIGGAD--GLVHLS 263
Query: 408 NMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--ISLSIADLESEPGLFVSDK 458
+S +RV ++L G+ V V ++ S+ DK I+LSI ++EP V+D+
Sbjct: 264 ELSWSRVKHPEEVLKVGDAVSVYIL-SVDEDKKRIALSIKRTQAEPWTTVTDR 315
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 262 FAEVLGRTL----------SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVK---FTEWN 308
A+++G+TL R +LS R+ +++ R Q+ + EP V+ T
Sbjct: 186 MAKLVGQTLPLKIIEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLC 245
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS---- 363
G I G + +EL SRV + E+ KVG + V I ++ED + LS
Sbjct: 246 DFGAFVDIGGADGLVHLSELSWSRVKHPEEVL-KVGDAVSVYILSVDEDKKRIALSIKRT 304
Query: 364 EREAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
+ E W T+ R G + G V ++ +GA +R+ D GL+HIS MS R+ D++
Sbjct: 305 QAEPWTTVTDRYQIGQSVSGVVTQLTAFGAFVRLEDGI-EGLIHISEMSDERIQHPRDVI 363
Query: 422 NEGERVKVLVVK 433
NEG+ V +++
Sbjct: 364 NEGDSVSARIIR 375
>gi|89257160|ref|YP_514522.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
LVS]
gi|254366882|ref|ZP_04982920.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
gi|290953358|ref|ZP_06557979.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
URFT1]
gi|422939398|ref|YP_007012545.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC200]
gi|89144991|emb|CAJ80351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
LVS]
gi|134252710|gb|EBA51804.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
gi|407294549|gb|AFT93455.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC200]
Length = 556
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L+ K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEYK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|399053696|ref|ZP_10742495.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|433544588|ref|ZP_20500968.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
gi|398048473|gb|EJL40945.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|432184167|gb|ELK41688.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
Length = 390
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
++S + + + +W + Q Q E IE E GGL+ + G+R F+P A ++ R V
Sbjct: 83 VVSKKAVAMESSWAELEQKMQSGEIIEATVKEVVKGGLVVDV-GVRGFIP-ASMVERHFV 140
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWATLN-----LREGTLLEGT 382
+F++ K G+ + +++ ++++ N +ILS E EA A ++ G +LEGT
Sbjct: 141 EDFSDYK---GKSLTLKVVEMDKEKNKVILSHKAVLEEEAKAKKQSVLDQIQVGQVLEGT 197
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +G + IG + GL+H+S ++ RV SD++ EG++V+V V+K ++I
Sbjct: 198 VQRMTDFGVFVDIGGVD--GLVHVSELAWNRVEKPSDVVKEGDKVQVKVLKIDRENERIG 255
Query: 442 LSIADLESEP 451
LSI + ++ P
Sbjct: 256 LSIKETQAGP 265
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
LS + +L +K + Q+ Q+ E + T++ G+ I G+ + +EL
Sbjct: 167 LSHKAVLEEEAKAKKQSVLDQIQVGQVLEGTVQRMTDF---GVFVDIGGVDGLVHVSELA 223
Query: 330 -SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGT 382
+RV +++ K G ++ V++ +I+ + + LS +E WA + + G++ GT
Sbjct: 224 WNRVEKPSDVV-KEGDKVQVKVLKIDRENERIGLSIKETQAGPWAKVAEEFKAGSITTGT 282
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKI 440
VK++ +GA + + GL+HIS ++ RV + ++L EG+ V+V ++ + P +I
Sbjct: 283 VKRLVSFGAFVEVA-PGIEGLVHISQIANRRVNTPGEVLKEGQEVQVKIL-DVVPQEQRI 340
Query: 441 SLSIADLESE 450
SLSI +E +
Sbjct: 341 SLSIRAVEED 350
>gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
Length = 392
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 9 GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 65
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW NL++GT+ +
Sbjct: 66 MRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNNLQKGTIRK 124
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 125 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRER 182
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 183 VSLSLKATQEDP 194
>gi|406926981|gb|EKD63087.1| RNA binding S1 protein [uncultured bacterium]
Length = 387
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 60/304 (19%)
Query: 172 PGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRG 231
PG V G ++S +++++ +++G G + KEV KD++E +
Sbjct: 24 PGKLVEGTIISLSKSRIMIDIGGITTGIIAGKEV----------------KDSQETI--- 64
Query: 232 KMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVL-GRTLSGRPLLSTRRLFRKMAWHRV 290
++ G + A VL G +LS R+ ++ +W R
Sbjct: 65 ---------------------KSIQVGDTISAAVLEPENEEGYVVLSLRKASQEKSWQRF 103
Query: 291 RQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL----LSRVNN------FTELKE 340
+ ++ I+VK E N GGLL I+G++ F+P ++L RVN +L++
Sbjct: 104 LDAFENDKIIQVKPNEANKGGLLLEIDGIKGFIPVSQLAPLHYPRVNGADSSMILQKLQK 163
Query: 341 KVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTVKKIYPYGAQIR 394
+G+ ++ I+++ LILSE+ A A L+ G ++G + + +G I
Sbjct: 164 LIGQNFDCKVIGIDKENGKLILSEKAAQSAQRSVAMSKLKIGQKVKGRISGVVKFG--IF 221
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
+ GL+HIS ++ V+ D G+ ++VLV+ M DKISLS+ L +P +
Sbjct: 222 VAFDGLEGLVHISEIAWGHVSDPLDYGKVGDELEVLVI-GMEADKISLSMKRLVPDPWID 280
Query: 455 VSDK 458
+ K
Sbjct: 281 AAKK 284
>gi|329770414|ref|ZP_08261796.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325]
gi|328836537|gb|EGF86197.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325]
Length = 402
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Query: 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELK 339
R +++W ++ + + E I + GGLL ++GLRAF+P + + ++ +L
Sbjct: 104 RKLMELSWAQLIEKFENGEYITATVSSQTKGGLLADVDGLRAFIPGSYIDTKFRK--DLS 161
Query: 340 EKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLEGTVKKIY 387
+ VG +I +++ N +IL+ R E + +N EG ++EG V +I
Sbjct: 162 KFVGNEYTFKIEEVDKAKNKIILNRRVILEEEKAKKLAEVYGNIN--EGDVIEGKVSRIT 219
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
+GA + IG+ + GLLHIS +S +R+ V D L+ G+ VKV V+ +KISLS
Sbjct: 220 NFGAFVNIGEVD--GLLHISEISHSRLEKVEDALSVGDTVKVAVIAVDKENEKISLSAKT 277
Query: 447 L 447
L
Sbjct: 278 L 278
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
VG + V + ++++ + LS + W A ++ G +LEG V+ +GA + +
Sbjct: 253 VGDTVKVAVIAVDKENEKISLSAKTLLPTQWEVARATIKAGDVLEGVVRNTTAFGAFVEV 312
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLE 448
D + GL+HIS +S RV +V+D+LN G++V V V+ F + ++SLSI +L+
Sbjct: 313 MD-DVEGLVHISQISHDRVNNVTDVLNIGDKVSVKVLDVDFENERLSLSIKELQ 365
>gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
Length = 405
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + +W + + + EV + GGL+ + G R F+P A ++ R V
Sbjct: 91 VLSKRAIDTENSWEELEKHFADQDVFEVTVADVVKGGLVADV-GARGFIP-ASMVERHFV 148
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGT 382
+F++ K GR + V++ ++ + N +ILS+++ L++G +LEGT
Sbjct: 149 EDFSDYK---GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVLEGT 205
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ + V SD+L+EG++V+V V+K + P+K +
Sbjct: 206 VQRLTQFGAFVDVGGVD--GLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLK-VDPEKGKI 262
Query: 443 SIADLESEPG 452
S++ + PG
Sbjct: 263 SLSIKAAAPG 272
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W T G ++ G VK++ +GA + +
Sbjct: 245 GDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELA 304
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPG 452
GL+HIS +S + + ++L EG+ V+V V+ + +ISLSI + E P
Sbjct: 305 -PGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSIKETEEAPA 360
>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
Length = 493
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q+K+ + +E E GGL
Sbjct: 85 VVEVGDKVEALVLQKEDKEGRLILSKKRAQYERAWGTIEQVKEEDGVVEGAVIEVVKGGL 144
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VG+ + +I ++++ N+++LS R AW
Sbjct: 145 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGQTLEAKIIELDKNRNNVVLS-RRAWLEQT 200
Query: 371 ---------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 201 QSEVRHGFLTQLQKGQIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 258
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 259 TVGDEVTVEVLDVDMDRERVSLSLKATQEDP 289
>gi|229918700|ref|YP_002887346.1| RNA binding S1 domain-containing protein [Exiguobacterium sp. AT1b]
gi|229470129|gb|ACQ71901.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
Length = 382
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
++S + + + AW R+ + + E EV + GGL+ I G+R F+P + + S V
Sbjct: 79 VVSKKDVDAEAAWDRIVEKFESGEVFEVMVKDKVKGGLVVDI-GIRGFIPASLVESHFVE 137
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWA----TL-NLREGTLLEGTV 383
+F+ + + V++ I+ + N +ILS E E A TL +L G ++EGTV
Sbjct: 138 DFSSY---LNNPITVKVVEIDREKNRVILSHKAVVEEEMSAKKSETLESLEVGQVIEGTV 194
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS M+ +RV SD++ EG+RVKV V+ + +K+ L
Sbjct: 195 QRLTDFGAFVDIGGVD--GLVHISEMAHSRVEKPSDVVTEGDRVKVKVLGLDLDNEKVKL 252
Query: 443 SIADLESEPG 452
SI E++PG
Sbjct: 253 SIK--ETQPG 260
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G I G+ + +E+ SRV +++ + G R+ V++ ++ D + LS +E
Sbjct: 201 GAFVDIGGVDGLVHISEMAHSRVEKPSDVVTE-GDRVKVKVLGLDLDNEKVKLSIKETQP 259
Query: 368 --WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W T+ ++ G ++EGTVK++ +GA + + GLLHIS ++ + + S++L+E
Sbjct: 260 GPWETIEGKIQPGDVIEGTVKRLVTFGAFVEVA-PQVEGLLHISQIANRHIATPSEVLSE 318
Query: 424 GERVKVLVVKSMFPD-KISLSIADLE-SEP 451
G+ VKV V+ D KISLS+ LE SEP
Sbjct: 319 GQEVKVKVLDVHLDDKKISLSMRALESSEP 348
>gi|406838677|ref|ZP_11098271.1| 30S ribosomal protein S1 [Lactobacillus vini DSM 20605]
Length = 405
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS RRL + W + + + E I T+ GGL+ G+R F+P + +
Sbjct: 90 GSYLLSQRRLEARKVWDEIEKKYEAGETISAPVTQVVKGGLVVDA-GVRGFIPASMIEDH 148
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----------AWATLNLREGTLLE 380
V + + K G+ + ++I I N LILS +E A L G ++E
Sbjct: 149 YVEDLNQFK---GQTLELKIIEIEPSENRLILSHKEIVKAEREAKKAETLAKLAAGDVVE 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK- 439
G V ++ +GA + +G + GL+H+S ++ RV SD+L G+ VKV V+ S+ PDK
Sbjct: 206 GKVARLTNFGAFVDLGGVD--GLVHVSEIAFERVDKPSDVLKVGQEVKVKVL-SVDPDKE 262
Query: 440 -ISLSIADLESEPGLFVSDK 458
+SLSI +P VS+K
Sbjct: 263 RVSLSIKQTLPQPWDQVSEK 282
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 71/119 (59%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIR 394
KVG+ + V++ ++ D + LS ++ W ++ + EG ++EGTVK++ +GA +
Sbjct: 245 KVGQEVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEKIAEGDVIEGTVKRLTSFGAFVE 304
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ GL+HIS +S + + +++L GE++KV V+ S+ P+ ++ LSI LE +P
Sbjct: 305 V-LPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVL-SVHPEQHRLGLSIKALEEKP 361
>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
Length = 493
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 18/214 (8%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG +VE G + A VL + GR +LS +R + AW + QIK+ + + E
Sbjct: 74 PGE-IVEVGDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDEGVVTGRVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--- 365
GGL+ I GLR FLP + L + +L+ VG+ + +I ++++ N+++LS R
Sbjct: 133 KGGLIVDI-GLRGFLPAS--LVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYL 189
Query: 366 -EAWATL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
E + + L++G + EG V I +GA + +G + GL+H+S +S + S
Sbjct: 190 EETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPS 247
Query: 419 DLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+++ G++V V V+ M +++SLS+ + +P
Sbjct: 248 EVVEVGQKVSVEVLDVDMDRERVSLSLKATQEDP 281
>gi|417643269|ref|ZP_12293329.1| 30S ribosomal protein S1 [Staphylococcus warneri VCU121]
gi|445059617|ref|YP_007385021.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
gi|443425674|gb|AGC90577.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
Length = 392
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 SGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F++ + G+ + +++ ++ + N +ILS + N L G +
Sbjct: 140 TDFIEDFSDFE---GQTIKIKVEELDPENNRVILSRKAVEQAENEVKKASLLDSLNAGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EGTV ++ +GA + IG + GL+H+S +S V S ++++ G++V V VKS+ D
Sbjct: 197 IEGTVARLTNFGAFVDIGGVD--GLVHVSELSHQHVQSPEEVVSVGDKVNVK-VKSVEKD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT 370
G I G+ + +EL + E VG ++ V++ + +DT + LS ++ T
Sbjct: 208 GAFVDIGGVDGLVHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDTLPT 267
Query: 371 L------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
E ++EGTV ++ +GA + I GL+HIS + + + ++L G
Sbjct: 268 PFAQIKGQFHENDVIEGTVVRLANFGAFVEIA-PGVQGLVHISEIDHKHIGTPGEVLEPG 326
Query: 425 ERVKVLVVK-SMFPDKISLSI 444
++V V ++ +++SLSI
Sbjct: 327 QQVSVKILGIDEENERVSLSI 347
>gi|254368625|ref|ZP_04984641.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC022]
gi|157121528|gb|EDO65719.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC022]
Length = 556
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L+ K + +++ +I+ N++++S + N + EG++L+
Sbjct: 140 PIKDVAHLEYK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|331701405|ref|YP_004398364.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
NRRL B-30929]
gi|406026967|ref|YP_006725799.1| 30S ribosomal protein S1 [Lactobacillus buchneri CD034]
gi|329128748|gb|AEB73301.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
gi|405125456|gb|AFS00217.1| 30S ribosomal protein S1 [Lactobacillus buchneri CD034]
Length = 416
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS++RL + W + + + +E I K ++ GGL+ G+R F+P A ++S
Sbjct: 89 GSFLLSSKRLETRKVWDELAEKSKNDETITAKVSQAVKGGLVVDA-GVRGFVP-ASMISD 146
Query: 332 --VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTL 378
V++ + K G+ + ++I I+ N LILS ERE L EG +
Sbjct: 147 HYVDDLNQFK---GQELELKIIEIDPVENRLILSHKAIVQAEKAEEREKLMQ-TLHEGDV 202
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP- 437
+EGTV ++ +GA + +G GL+H+S ++ RV SD+L G+ VKV V+ F
Sbjct: 203 VEGTVARLTNFGAFVDLG--GMDGLVHVSQIAYERVDKPSDVLKVGQTVKVKVLSVDFDR 260
Query: 438 DKISLSIADLESEP 451
++ISLSI EP
Sbjct: 261 NRISLSIKQTLPEP 274
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSER----EAWATLNLRE--GTLLEGTVKKIYPYGAQIR 394
KVG+ + V++ ++ D N + LS + E W + + G++LEGTVK++ +GA +
Sbjct: 244 KVGQTVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPVGSVLEGTVKRLVDFGAFVE 303
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+ GL+HIS ++ + + +D+L GE++KV V+ +++LSI L P
Sbjct: 304 VF-PGVEGLVHISQIAHEHIDTPADVLKVGEKIKVKVLDVDTDRKRLALSIKALTDAP 360
>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 491
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQTIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|410453981|ref|ZP_11307924.1| RNA binding S1 domain-containing protein [Bacillus bataviensis LMG
21833]
gi|409932661|gb|EKN69619.1| RNA binding S1 domain-containing protein [Bacillus bataviensis LMG
21833]
Length = 379
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R++ + AW + Q Q E E + + GGL+ + G+R F+P + + + V
Sbjct: 80 ILSKRKVDAEKAWDHLEQQFQNGEVFETEVKDVVKGGLVVDL-GVRGFVPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLEGTV 383
+F++ K GR + +I ++++ N LILS R L+ G +++GTV
Sbjct: 139 DFSDYK---GRSLSFKIVELDKEKNRLILSHRAVVEQEKGKQKQNILGALKAGQVIDGTV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
++I +GA + IG + GL+HIS +S V +D+++EG++V+V V+ ++ISL
Sbjct: 196 QRITDFGAFVDIGGID--GLVHISQLSYEHVDKPTDVVHEGQQVQVKVLSVDRDNERISL 253
Query: 443 SIADLESEPGLFVSDK 458
SI + P +S+K
Sbjct: 254 SIKETLPGPWSNISEK 269
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ ++ D + LS +E W+ ++ + +G++L+G VK++ YGA + +
Sbjct: 234 GQQVQVKVLSVDRDNERISLSIKETLPGPWSNISEKAPKGSILDGKVKRLVSYGAFVEVF 293
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSI 444
GL+HIS ++ + + ++L EG+ VKV V+ + D ++SLSI
Sbjct: 294 -PGVEGLVHISQIAHKHIGTPHEVLKEGQEVKVKVLDANEQDQRLSLSI 341
>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 491
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R+
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQTIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
Length = 405
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + +W + + + EV + GGL+ + G R F+P A ++ R V
Sbjct: 91 VLSKRAIDTENSWDELEKHFADQDVFEVTVADVVKGGLVADV-GARGFIP-ASMVERHFV 148
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGT 382
+F++ K GR + V++ ++ + N +ILS+++ L++G +LEGT
Sbjct: 149 EDFSDYK---GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVLEGT 205
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ + V SD+L+EG++V+V V+K + P+K +
Sbjct: 206 VQRLTQFGAFVDVGGVD--GLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLK-VDPEKGKI 262
Query: 443 SIADLESEPG 452
S++ + PG
Sbjct: 263 SLSIKAAAPG 272
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W T G ++ G VK++ +GA + +
Sbjct: 245 GDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELA 304
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPG 452
GL+HIS +S + + ++L EG+ V+V V+ + +ISLSI + E P
Sbjct: 305 -PGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSIKETEEAPA 360
>gi|375293001|ref|YP_005127540.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
gi|376293166|ref|YP_005164840.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
gi|371582672|gb|AEX46338.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
gi|372110489|gb|AEX76549.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
Length = 513
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 104 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 163
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 164 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 219
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 220 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 277
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 278 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 308
>gi|313884085|ref|ZP_07817851.1| putative ribosomal protein S1 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620532|gb|EFR31955.1| putative ribosomal protein S1 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 438
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS +R+ K W + + + +E IE GGL+ + G+R F+P + +
Sbjct: 99 NGNYLLSKKRVDAKKVWAELEEKAKNDEVIEAPVKNVVKGGLVVDL-GVRGFVPASMVED 157
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAWAT---LNLREGTLL 379
V++F+ VG+ + +I I + N LILS EREA L EG+++
Sbjct: 158 YFVDDFSTY---VGKELKFKIVEIEPNDNRLILSHKDIARAEREAKRAERLQTLEEGSII 214
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
EGTV +I +GA I + GL+HIS ++ V SD L GE VKV V+ +
Sbjct: 215 EGTVARIVNFGAFIDL--DGVDGLVHISRIAHEHVAKPSDYLTPGETVKVKVLSVDLEEG 272
Query: 439 KISLSIAD 446
++SLSI D
Sbjct: 273 RVSLSIKD 280
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434
+G +L+GTVK++ +GA + + GL+HIS +S + + +D L EG+ + V V+ S
Sbjct: 295 QGAVLKGTVKRLTDFGAFVEVF-PGVEGLVHISQISHEHIATPADKLEEGQEIDVKVL-S 352
Query: 435 MFPD--KISLSIADLESEPG 452
+ P+ ++SLSI LE P
Sbjct: 353 VDPEEHRLSLSIKALEEAPA 372
>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
Length = 403
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S V
Sbjct: 180 VEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDALKAGQDVKVKVI-GIDNDRHRISLSIKQTEPSPF 273
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + K G+ + V++ I+ D + + LS ++ AT NL EG + EG V
Sbjct: 231 YKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLNEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISL 349
Query: 443 SI 444
SI
Sbjct: 350 SI 351
>gi|336325470|ref|YP_004605436.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
gi|336101452|gb|AEI09272.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
Length = 488
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E
Sbjct: 74 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 133 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLS-RRAW 188
Query: 369 ATL-----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 246
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ + +++SLS+ + +P
Sbjct: 247 SEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|334563708|ref|ZP_08516699.1| 30S ribosomal protein S1 [Corynebacterium bovis DSM 20582]
Length = 488
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 251 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|340029608|ref|ZP_08665671.1| 30S ribosomal protein S1 [Paracoccus sp. TRP]
Length = 559
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S + R+ AW R+ + E +E GG + G AFLP +++ R
Sbjct: 85 GEASISREKARREEAWDRLEKAYAAEERVEGAIFGRVKGGFTVDLGGAVAFLPGSQVDVR 144
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + L +G + QI +++ ++++S E+ A NL EG +E
Sbjct: 145 PVRDAGPL---MGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIANLSEGQTVE 201
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA + +G + GLLH+++M+ RV S++L+ GE VKV VVK + +
Sbjct: 202 GVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHPSEILSIGETVKVQVVKINKETHR 259
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL + L+++P V+DK
Sbjct: 260 ISLGMKQLQADPWDTVADK 278
>gi|337754169|ref|YP_004646680.1| 30S ribosomal protein S1 [Francisella sp. TX077308]
gi|336445774|gb|AEI35080.1| SSU ribosomal protein S1p [Francisella sp. TX077308]
Length = 556
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + NE + + T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIENAFENNETVLGRITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L++K + +++ +I+ N++++S + N + EG +L+
Sbjct: 140 PVKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISEGGVLQ 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum]
Length = 475
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 18/177 (10%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRR 345
W + + ++ IE + GG+ + GL+AFLP +++ L V + L +G+
Sbjct: 4 WDAIEEQFNRSDVIEGRIISRIKGGMTVDV-GLKAFLPGSQIDLRPVRDMDRL---IGQT 59
Query: 346 MYVQITRINEDTNDLILSER---EAW------ATLN-LREGTLLEGTVKKIYPYGAQIRI 395
+ V+I ++N+ ++I+S R E W T++ L+EG +LEG VK I YGA I +
Sbjct: 60 IQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEILEGIVKNITDYGAFIDL 119
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G + GLLHI++MS RVT+ + +N G++V V+V+K ++SL + L +P
Sbjct: 120 GGID--GLLHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKETGRVSLGLKQLTPDP 174
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSERE----AWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + VQ+ +I+E + L ++ W + + G ++ G +K + +GA + +
Sbjct: 232 VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVEGKYPVGAVVSGKIKSLTDFGAFVGL 291
Query: 396 GDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK 433
D GL+HIS+MS T+ V S++ +G++V+V+V+K
Sbjct: 292 -DEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLK 329
>gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187]
gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
gi|375283572|ref|YP_005104010.1| 30S ribosomal protein S1 [Bacillus cereus NC7401]
gi|423353921|ref|ZP_17331547.1| ribosomal protein S1 [Bacillus cereus IS075]
gi|423569488|ref|ZP_17545734.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187]
gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
gi|358352098|dbj|BAL17270.1| ribosomal protein S1 [Bacillus cereus NC7401]
gi|401088267|gb|EJP96458.1| ribosomal protein S1 [Bacillus cereus IS075]
gi|401206476|gb|EJR13267.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
Length = 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|354807565|ref|ZP_09041029.1| 30S ribosomal protein S1 [Lactobacillus curvatus CRL 705]
gi|354513955|gb|EHE85938.1| 30S ribosomal protein S1 [Lactobacillus curvatus CRL 705]
Length = 403
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 18/200 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL + W + Q E I K + GGL+ G+R F+P + +
Sbjct: 93 NGSYLLSKRRLEARKVWSEIEQKFANQETITAKVIDVVKGGLVVD-AGVRGFVPASMISD 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWATLN-----LREGTLL 379
R V + + K G+ + +QI I N LILS E+E A L + G ++
Sbjct: 152 RFVRDLSSFK---GQELTLQIIEIEPSENRLILSRKALLEQERQAKLQAVFEKMLPGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
EG V ++ +GA I +G + GL+H+S +S + SD+L G++V+V V+
Sbjct: 209 EGEVARLTNFGAFIDLGGVD--GLVHVSEISYDHINQPSDVLEVGQKVQVKVLSLDQEKG 266
Query: 439 KISLSIADLESEPGLFVSDK 458
+ISLSI D + P ++DK
Sbjct: 267 RISLSIKDTQPGPWDDIADK 286
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 70/120 (58%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
+VG+++ V++ ++++ + LS ++ W + + G+ LEG VK++ +GA +
Sbjct: 249 EVGQKVQVKVLSLDQEKGRISLSIKDTQPGPWDDIADKAPVGSTLEGVVKRLTTFGAFVE 308
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
+ GL+HIS +S + + +D+L EG+ V+V V+ S+ P+ ++ LSI L+ +P
Sbjct: 309 VF-PGVEGLVHISQISHQHIATPNDVLEEGQTVQVKVL-SVDPEQQRLGLSIKALQEKPA 366
>gi|257869555|ref|ZP_05649208.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
gi|357050749|ref|ZP_09111946.1| hypothetical protein HMPREF9478_01929 [Enterococcus saccharolyticus
30_1]
gi|257803719|gb|EEV32541.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
gi|355380901|gb|EHG28033.1| hypothetical protein HMPREF9478_01929 [Enterococcus saccharolyticus
30_1]
Length = 402
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 40/252 (15%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG-----PGRP-----------VVETGTVL---FAEVLGR 268
+V+G++ ++D AI G+G P + VV+ G VL +G+
Sbjct: 31 IVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTLPVEDINEVVKVGDVLELVVISAIGK 90
Query: 269 TL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+G LLS RRL K W + + Q + IE T GGL+ + G+R F+P +
Sbjct: 91 DKENGSYLLSKRRLDAKKVWEDIEKDFQAGKIIEAPVTNVVKGGLVVDV-GVRGFVPASM 149
Query: 328 LLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILS---------EREAWATL-NLREG 376
+ V +F + K G+ + +I I N LILS E++ A L +L EG
Sbjct: 150 VEDHFVADFEDYK---GKTLTFKIVEIEPSENRLILSHKAVVEAEKEKQKEALLADLYEG 206
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+H+S +S V SD+L+ G+ V V V+ S+
Sbjct: 207 QEIEGKVARLTDFGAFVDLGGID--GLVHVSEISHAHVGKPSDVLSVGDTVNVRVL-SVD 263
Query: 437 PDK--ISLSIAD 446
P+K +SLSI D
Sbjct: 264 PNKERVSLSIKD 275
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V++ ++ + + LS ++ W+ + + G++L+G VK++ +GA + +
Sbjct: 251 VGDTVNVRVLSVDPNKERVSLSIKDTLPGPWSNIEEQAPVGSVLDGVVKRLTSFGAFVEV 310
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSI 444
GL+HIS +S + + ++L+EG++V+V V++ D +I+LSI
Sbjct: 311 F-PGVEGLIHISQISHKHIATPHEVLHEGDQVQVKVLEVNPTDHRIALSI 359
>gi|421859203|ref|ZP_16291442.1| ribosomal protein S1 [Paenibacillus popilliae ATCC 14706]
gi|410831268|dbj|GAC41879.1| ribosomal protein S1 [Paenibacillus popilliae ATCC 14706]
Length = 406
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 20/199 (10%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR- 331
R +LS R++ + AW ++Q NE EV + GG++ + G+RAF+P A ++ R
Sbjct: 91 RMVLSKRQVDSENAWDVMQQHFDNNEVFEVTVVDVVKGGVVADV-GVRAFIP-ASMVERH 148
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLLE 380
V +F++ K GR + V++ I+ + N LILS++E +L EG LE
Sbjct: 149 FVEDFSDYK---GRTLRVKVKEIDRENNKLILSQKEVLDEEFEANKKHVMESLSEGQELE 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-K 439
GTV+++ +GA + +G + GL+H+S M+ V SDL+ EG++V V V+K + K
Sbjct: 206 GTVQRLTQFGAFVDVGGVD--GLVHVSEMAWHHVDKPSDLVQEGQKVNVKVLKVDPANGK 263
Query: 440 ISLSIADLESEPGLFVSDK 458
ISLS+ + P +DK
Sbjct: 264 ISLSMKATQQGPWEQAADK 282
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 343 GRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ +++ + LS ++ W A ++ G +L G VK++ +GA + +
Sbjct: 247 GQKVNVKVLKVDPANGKISLSMKATQQGPWEQAADKIKTGDILTGEVKRLVDFGAFVEVA 306
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEP 451
S GL+HIS ++ +T+ S++L +G+ V+V V+ +K +SLSI + E P
Sbjct: 307 -SGVEGLVHISQIAHRHITTPSEVLKQGQTVQVKVLDFNPAEKRVSLSIKETEEAP 361
>gi|345021423|ref|ZP_08785036.1| 30S ribosomal protein S1 [Ornithinibacillus scapharcae TW25]
Length = 377
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 96/169 (56%), Gaps = 17/169 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + ++MAW + Q E +V+ E GGL+ + G+R F+P + + + V
Sbjct: 77 ILSKRLVDQEMAWGDLEAKFQSGEVFDVQVKEVVKGGLVVDV-GVRGFIPASLVETHFVE 135
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F +++V + VQ+ ++ + N +ILS R ++ +L G +LEGTV
Sbjct: 136 DFAAYQDRV---LAVQLVELDREQNKVILSHRAVIEQEQASKKSKLLQSLEVGQVLEGTV 192
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
++I +G + +G + GL+HIS +S RV+ S++++EGE++KV V+
Sbjct: 193 QRITDFGVFVDLGGMD--GLVHISQLSHERVSKASEVVSEGEKIKVEVL 239
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 98/186 (52%), Gaps = 13/186 (6%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
LS R ++ + +K + ++ Q+ E + T++ G+ + G+ + ++L
Sbjct: 161 LSHRAVIEQEQASKKSKLLQSLEVGQVLEGTVQRITDF---GVFVDLGGMDGLVHISQLS 217
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGT 382
RV+ +E+ + G ++ V++ I+ D + LS ++ W + ++ G +LEGT
Sbjct: 218 HERVSKASEVVSE-GEKIKVEVLSIDHDNERIALSRKKVLPGPWQGMEEKIQPGQVLEGT 276
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
VK++ +GA + + N GL+HIS ++ + + ++L G++V V V+ + +++S
Sbjct: 277 VKRLVNFGAFVEVL-PNVEGLVHISQIANRHIGTPHEVLEVGQKVTVKVLDINEKEERMS 335
Query: 442 LSIADL 447
LSI ++
Sbjct: 336 LSIREI 341
>gi|224476595|ref|YP_002634201.1| 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421202|emb|CAL28016.1| putative 30S ribosomal protein S1 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 392
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG +LS R+L ++ ++ +++ + NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 SGAYILSIRQLEQEKSYEYLQEKQDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ N +ILS + N L EG +
Sbjct: 140 TDFIEDFSSFD---GQVLELRVEELDPANNRVILSRKAVEQERNEAKKAELLSSLSEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EGT+ ++ +GA + IG + GL+H+S +S V D+++ G++V V VKS+ D
Sbjct: 197 IEGTIARLTNFGAFVDIGGVD--GLVHVSELSHEHVDKPEDVVSVGDKVNVK-VKSVEQD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 SERISLSIKD 263
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT 370
G I G+ + +EL + E VG ++ V++ + +D+ + LS ++ +
Sbjct: 208 GAFVDIGGVDGLVHVSELSHEHVDKPEDVVSVGDKVNVKVKSVEQDSERISLSIKDTLPS 267
Query: 371 L------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL--N 422
+ +++EG V ++ +GA + I + GL+HIS +SR + + S++L N
Sbjct: 268 PFESIKGQIHADSIIEGRVVRLTDFGAFVEIA-AGVQGLVHISEISRKHIGTPSEVLEPN 326
Query: 423 EGERVKVLVVKSMFPDKISLSI-ADLESEPGLFVSDKE 459
+ VKVL + ++ISLSI A L E L + D E
Sbjct: 327 QEVTVKVLSIDEE-SERISLSIKAALPEEEVLQIDDDE 363
>gi|47565960|ref|ZP_00236998.1| ribosomal protein S1 [Bacillus cereus G9241]
gi|47556877|gb|EAL15207.1| ribosomal protein S1 [Bacillus cereus G9241]
Length = 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
Length = 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
Length = 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + L+ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGELKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + + GL+H+S ++ V + S++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEVL-PGVEGLVHVSQIANRHVKNPSEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|333990445|ref|YP_004523059.1| 30S ribosomal protein S1 [Mycobacterium sp. JDM601]
gi|333486413|gb|AEF35805.1| ribosomal protein S1 RpsA [Mycobacterium sp. JDM601]
Length = 479
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +GR + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L]
gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
E33L]
Length = 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIGGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|354613005|ref|ZP_09030941.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica
YIM 90007]
gi|353222660|gb|EHB86961.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica
YIM 90007]
Length = 507
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 86 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKERDEPVSGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R
Sbjct: 146 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQ 202
Query: 371 -------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 203 SEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVE 260
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 261 VGQEVTVEVLSVEMDRERVSLSLKATQEDP 290
>gi|297564598|ref|YP_003683570.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM
9946]
gi|296849047|gb|ADH62062.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946]
Length = 598
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 109/200 (54%), Gaps = 17/200 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS +R +W +++++ EP+ V E GGL+ +EG+RAFLP +++
Sbjct: 143 NGQIILSKKRAETDRSWVKIQELFDRAEPVMVTVKEKVKGGLVAFVEGVRAFLPASQV-- 200
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL------NLREGTLLE 380
+ EL E VG+ V+I +N +ILS R E +L L+ ++E
Sbjct: 201 DLKRTPELDEYVGQSFPVKIIELNRKKGRVILSRRAVVEEEQKSLRAKLLSQLKPDDVVE 260
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--D 438
G V ++ +G + +G + GL+H S ++ R T +++ +G+ V+ V+ S+ P +
Sbjct: 261 GQVVEVTEFGVFVALGGVD--GLVHRSEITWGRFTHPKEVIQKGQTVRAKVL-SVDPERE 317
Query: 439 KISLSIADLESEPGLFVSDK 458
+++LSI L S+P L VS+K
Sbjct: 318 RVNLSIKALVSDPWLTVSEK 337
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIR 394
K G+ + + RI+ L L R+ W +L R GT ++G V + +G +
Sbjct: 387 KEGQEVEAVVLRIDPTERRLSLGLRQTQPDPWKSLPDRYPPGTPVKGKVTGLTDFGVFVE 446
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPG 452
I + GL+HIS + +RV SDL +G+ V+ +++ +ISLS L + P
Sbjct: 447 I-EPGIEGLIHISELDYSRVEKPSDLFKKGDEVEAVILNIDPVEQRISLSRKRLLTPPA 504
>gi|398813282|ref|ZP_10571981.1| ribosomal protein S1 [Brevibacillus sp. BC25]
gi|398038943|gb|EJL32089.1| ribosomal protein S1 [Brevibacillus sp. BC25]
Length = 390
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 108/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
++S + + + +W + Q Q E IE E GGL+ + G+R F+P A ++ R V
Sbjct: 83 VVSKKAVAMESSWSDLEQKMQAGEIIEATVKEVVKGGLVVDV-GVRGFIP-ASMVERHFV 140
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATLN-LREGTLLEGT 382
+F++ K G+ + +++ ++++ N +ILS + + + ++ ++ G +LEGT
Sbjct: 141 EDFSDYK---GKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGT 197
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +G + IG + GL+H+S ++ RV SD++ EG++V+V V+K ++I
Sbjct: 198 VQRMTDFGVFVDIGGVD--GLVHVSELAWNRVDKPSDVVKEGDKVQVKVLKIDRENERIG 255
Query: 442 LSIADLESEP 451
LSI D ++ P
Sbjct: 256 LSIKDTQAGP 265
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
LS + +L +K + Q+ Q+ E + T++ G+ I G+ + +EL
Sbjct: 167 LSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDF---GVFVDIGGVDGLVHVSELA 223
Query: 330 -SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGT 382
+RV+ +++ K G ++ V++ +I+ + + LS ++ WA + + + G++L GT
Sbjct: 224 WNRVDKPSDVV-KEGDKVQVKVLKIDRENERIGLSIKDTQAGPWANVAEDFKAGSILNGT 282
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKI 440
VK++ +GA I + GL+HIS ++ RV + S++L EG+ V+V V+ + P +I
Sbjct: 283 VKRLVSFGAFIELA-PGIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVL-DVVPQEQRI 340
Query: 441 SLSIADLESE 450
SLSI +E +
Sbjct: 341 SLSIRAVEED 350
>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
Length = 388
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 105/190 (55%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + W + + + E E + + GGL+ + G+R F+P A L+ R V
Sbjct: 81 VLSRRAVAAEKTWENMAEKLESGEVFEAEVADVVKGGLVVDV-GVRGFIP-ASLVERFYV 138
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW--ATLNLREGTL--------LEGT 382
+F+E K G+ + +++ ++ + N LILS+R LN ++ TL + GT
Sbjct: 139 EDFSEYK---GKTLRLKVVELDRERNKLILSQRAVLDEEALNQKKETLHSISAGEVVSGT 195
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V++I +G + IG + GL+HIS +S + + S++++EG+ VKV V+ S+ PD +
Sbjct: 196 VQRITSFGVFVDIGGVD--GLVHISQLSHEHIETPSEVVSEGDEVKVKVL-SVDPDNERI 252
Query: 443 SIADLESEPG 452
S++ E+ PG
Sbjct: 253 SLSIKETMPG 262
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G + V++ ++ D + LS +E W + G ++ G VK++ +GA + +
Sbjct: 235 GDEVKVKVLSVDPDNERISLSIKETMPGPWEGVEEQFSVGDVVTGKVKRLVSFGAFVEVA 294
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESE 450
GL+HIS ++ + + ++L EGE V ++ DK ISLSI LE E
Sbjct: 295 -KGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDKRISLSIRALEEE 348
>gi|375290806|ref|YP_005125346.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
gi|376242739|ref|YP_005133591.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
gi|376245637|ref|YP_005135876.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
gi|376248430|ref|YP_005140374.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
gi|376251220|ref|YP_005138101.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
gi|376254226|ref|YP_005142685.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
gi|376257038|ref|YP_005144929.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
gi|376287654|ref|YP_005160220.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
gi|376290348|ref|YP_005162595.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
gi|371580477|gb|AEX44144.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
gi|371584988|gb|AEX48653.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
gi|372103744|gb|AEX67341.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
gi|372105981|gb|AEX72043.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
gi|372108267|gb|AEX74328.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
gi|372112724|gb|AEX78783.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
gi|372114998|gb|AEX81056.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
gi|372117310|gb|AEX69780.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
gi|372119555|gb|AEX83289.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
Length = 513
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 104 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 163
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 164 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 219
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 220 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 277
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 278 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 308
>gi|376284650|ref|YP_005157860.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
gi|371578165|gb|AEX41833.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
Length = 506
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 97 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 156
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 157 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 212
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 213 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 270
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 271 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 301
>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
gi|218902709|ref|YP_002450543.1| 30S ribosomal protein S1 [Bacillus cereus AH820]
gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
gi|227815655|ref|YP_002815664.1| 30S ribosomal protein S1 [Bacillus anthracis str. CDC 684]
gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
gi|229604611|ref|YP_002866001.1| 30S ribosomal protein S1 [Bacillus anthracis str. A0248]
gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
America USA6153]
gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
gi|376265440|ref|YP_005118152.1| 30S ribosomal protein S1 [Bacillus cereus F837/76]
gi|386735301|ref|YP_006208482.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
gi|421638607|ref|ZP_16079202.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
gi|423552668|ref|ZP_17528995.1| ribosomal protein S1 [Bacillus cereus ISP3191]
gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
gi|364511240|gb|AEW54639.1| SSU ribosomal protein S1p [Bacillus cereus F837/76]
gi|384385153|gb|AFH82814.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
gi|401186610|gb|EJQ93698.1| ribosomal protein S1 [Bacillus cereus ISP3191]
gi|403394134|gb|EJY91375.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|300117474|ref|ZP_07055264.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
gi|298725309|gb|EFI65961.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|229172235|ref|ZP_04299799.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
gi|423403890|ref|ZP_17381063.1| ribosomal protein S1 [Bacillus cereus BAG2X1-2]
gi|423460523|ref|ZP_17437320.1| ribosomal protein S1 [Bacillus cereus BAG5X2-1]
gi|423475480|ref|ZP_17452195.1| ribosomal protein S1 [Bacillus cereus BAG6X1-1]
gi|228611223|gb|EEK68481.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
gi|401140576|gb|EJQ48132.1| ribosomal protein S1 [Bacillus cereus BAG5X2-1]
gi|401648034|gb|EJS65637.1| ribosomal protein S1 [Bacillus cereus BAG2X1-2]
gi|402435350|gb|EJV67384.1| ribosomal protein S1 [Bacillus cereus BAG6X1-1]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|433444810|ref|ZP_20409552.1| 30S ribosomal protein S1-like protein [Anoxybacillus flavithermus
TNO-09.006]
gi|432001350|gb|ELK22228.1| 30S ribosomal protein S1-like protein [Anoxybacillus flavithermus
TNO-09.006]
Length = 378
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 19/170 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS + + AW + + + V + GGL+ + G+RAF+P A L+ + V
Sbjct: 79 ILSKKAADAEKAWEELERKLANGDTFNVVVKDIVKGGLVADV-GVRAFIP-ASLVEKDFV 136
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+FT+ K GR + V++ ++ + N ++LS R + A +L+ G +LEGT
Sbjct: 137 EDFTDYK---GRTLAVKVIELDREKNRVVLSHRAVIEEEESSKKKAALQSLQVGQVLEGT 193
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
V +I +G + IGD + GL+HIS ++ TRV SD++ EG+ VKV V+
Sbjct: 194 VARITNFGVFVNIGDVD--GLVHISQLAHTRVDHPSDVVKEGDVVKVKVL 241
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 13/187 (6%)
Query: 269 TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LS R ++ +K A + Q+ Q+ E + T + G+ I + + ++L
Sbjct: 162 VLSHRAVIEEEESSKKKAALQSLQVGQVLEGTVARITNF---GVFVNIGDVDGLVHISQL 218
Query: 329 L-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEG 381
+RV++ +++ K G + V++ I+E++ + LS + A W + ++EG +LEG
Sbjct: 219 AHTRVDHPSDVV-KEGDVVKVKVLAIDEESGRVSLSMKAALPAPWDDIEQKIKEGDVLEG 277
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-I 440
TVK++ P+GA + + GL+HIS +S + + ++L EG+ VKV V+ +K +
Sbjct: 278 TVKRLAPFGAFVEVL-PGVEGLVHISQISTKHIGTPHEVLKEGDVVKVKVLAVNEQEKRL 336
Query: 441 SLSIADL 447
SLSI +L
Sbjct: 337 SLSIREL 343
>gi|357590914|ref|ZP_09129580.1| 30S ribosomal protein S1 [Corynebacterium nuruki S6-4]
Length = 487
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKDGRLILSKKRAQYERAWGTIEDLKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQELEAKIIELDKQRNNVVLS-RRAWLEET 192
Query: 371 ---------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSAVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+ G+ V V V+ + +++SLS+ + +P
Sbjct: 251 SVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|375141664|ref|YP_005002313.1| 30S ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
gi|359822285|gb|AEV75098.1| ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
Length = 482
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
N G+ V V V+ M +++SLS+ + +P
Sbjct: 253 NVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 393
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|229160548|ref|ZP_04288543.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
gi|228622958|gb|EEK79789.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ V V V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVTVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|254723673|ref|ZP_05185459.1| 30S ribosomal protein S1 [Bacillus anthracis str. A1055]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 72/125 (57%), Gaps = 13/125 (10%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGA--QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-IS 441
++ +GA +I +G GL+H+S ++ V + +++L G+ VKV V++ +K IS
Sbjct: 283 RLVTFGAFVEILLG---VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339
Query: 442 LSIAD 446
LSI +
Sbjct: 340 LSIKE 344
>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
gi|419860721|ref|ZP_14383362.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
gi|387983115|gb|EIK56614.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 486
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 251 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|206974887|ref|ZP_03235802.1| ribosomal protein S1 [Bacillus cereus H3081.97]
gi|229195798|ref|ZP_04322558.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
gi|423371578|ref|ZP_17348918.1| ribosomal protein S1 [Bacillus cereus AND1407]
gi|423606699|ref|ZP_17582592.1| ribosomal protein S1 [Bacillus cereus VD102]
gi|206746906|gb|EDZ58298.1| ribosomal protein S1 [Bacillus cereus H3081.97]
gi|228587695|gb|EEK45753.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
gi|401101289|gb|EJQ09279.1| ribosomal protein S1 [Bacillus cereus AND1407]
gi|401241524|gb|EJR47912.1| ribosomal protein S1 [Bacillus cereus VD102]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|218896527|ref|YP_002444938.1| 30S ribosomal protein S1 [Bacillus cereus G9842]
gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
gi|402561411|ref|YP_006604135.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
gi|423361556|ref|ZP_17339058.1| ribosomal protein S1 [Bacillus cereus VD022]
gi|423564107|ref|ZP_17540383.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
gi|434374536|ref|YP_006609180.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
gi|401079367|gb|EJP87665.1| ribosomal protein S1 [Bacillus cereus VD022]
gi|401197598|gb|EJR04527.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
gi|401790063|gb|AFQ16102.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
gi|401873093|gb|AFQ25260.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|384185506|ref|YP_005571402.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410673799|ref|YP_006926170.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|423382992|ref|ZP_17360248.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
gi|423530548|ref|ZP_17506993.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
gi|452197822|ref|YP_007477903.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|401643852|gb|EJS61546.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
gi|402447063|gb|EJV78921.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
gi|409172928|gb|AFV17233.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|452103215|gb|AGG00155.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|423576686|ref|ZP_17552805.1| ribosomal protein S1 [Bacillus cereus MSX-D12]
gi|401207682|gb|EJR14461.1| ribosomal protein S1 [Bacillus cereus MSX-D12]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|229189679|ref|ZP_04316693.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
gi|228593728|gb|EEK51533.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + + GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEVL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|222095228|ref|YP_002529288.1| 30S ribosomal protein S1 [Bacillus cereus Q1]
gi|221239286|gb|ACM11996.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
Q1]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|75763037|ref|ZP_00742826.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489469|gb|EAO52896.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 313
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 12 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 70
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 71 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 127
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 128 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 184
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 185 LSIKAAQPG 193
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 155 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 213
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 214 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLS 272
Query: 444 IAD 446
I +
Sbjct: 273 IKE 275
>gi|167758828|ref|ZP_02430955.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704]
gi|336421815|ref|ZP_08601970.1| hypothetical protein HMPREF0993_01347 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663568|gb|EDS07698.1| 30S ribosomal protein S1 [Clostridium scindens ATCC 35704]
gi|336009664|gb|EGN39655.1| hypothetical protein HMPREF0993_01347 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 227
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+ V+ + VK GG + +EGLR F+P ++L ++ +L+ + + +
Sbjct: 29 WNLVQSYMDNKTVLPVKVEGIVNGGAIAMVEGLRGFIPASKL--SLSYIEDLETYLLKDI 86
Query: 347 YVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIG 396
V++ +++ N L+LS RE N++ G++L G V+ + YGA +R+
Sbjct: 87 EVRVIDVDQANNRLVLSAREILKEKEKKAMEEKIANVKVGSVLTGKVESLQNYGAFVRLE 146
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
D SGL+HIS +S+ RV S D+L EG+ V V ++ + KISLS+ LE
Sbjct: 147 DG-LSGLVHISQISQKRVKSPKDVLTEGQEVGVKII-GVKDGKISLSMKALE 196
>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
gi|3122814|sp|O06000.1|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|406992913|gb|EKE12168.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 366
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 34/211 (16%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS R++ + W + K+ E IEV E N GG++ +G+R FLP ++L +
Sbjct: 77 AGQVVLSMRKVSQDTRWKELENRKETGEDIEVVAIEVNRGGVICEWQGIRGFLPASQLAA 136
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LNLREGTLLEG 381
+ T+L +G+ + +I ++ TN LILS+R+ ++ G L G
Sbjct: 137 S-SQATDL---IGKNLTARIIEVDRGTNRLILSQRQPKKADLEAILKQLTKVKIGQKLSG 192
Query: 382 TVKKIYPYGAQIRI--------------------GDSNRSGLLHISNMSRTRVTSVSDLL 421
V + P+G + I G S GL+HIS +S +V L
Sbjct: 193 VVTAVLPFGVFVEINLEVSNGTKGSKVSKGEEISGTSKLEGLVHISEISWEKVDDPKKLF 252
Query: 422 NEGERVKVLVV-KSMFPDKISLSIADLESEP 451
G++++V+++ K +++LSI L +P
Sbjct: 253 KVGDKLEVMIIAKDETTGRLNLSIKQLAKDP 283
>gi|406875885|gb|EKD25587.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 468
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 268 RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
R G ++S +L + W + + + ++ I V TE N GGLL + G++ F+P ++
Sbjct: 82 RHEDGHYIVSITKLLQYDIWKSIMKKFEADDVITVIPTEANLGGLLVDMHGIKGFVPLSQ 141
Query: 328 L----LSRVNN------FTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------L 371
L RV + F +L + +G+ + V+I I+ED ++LSEREA
Sbjct: 142 LAPIHYPRVEDGDQEIIFEKLLDLIGKELKVRIINIDEDEKRIVLSEREALKEERENILK 201
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
+L G + +G V + YG + IG GL+HIS ++ V ++ L G+++ V V
Sbjct: 202 DLEVGKIYDGVVSGLSSYGLFVTIG-WTVEGLVHISEITYGHVNNIEKLGKIGDKISVKV 260
Query: 432 VKSMFPDKISLSIADLESEP 451
+ + KISLS L+ +P
Sbjct: 261 I-GLENGKISLSSKKLKDDP 279
>gi|423637751|ref|ZP_17613404.1| ribosomal protein S1 [Bacillus cereus VD156]
gi|401273012|gb|EJR79000.1| ribosomal protein S1 [Bacillus cereus VD156]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG +K
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVIK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|387885873|ref|YP_006316172.1| 30S ribosomal protein S1 [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386870689|gb|AFJ42696.1| 30S ribosomal protein S1 [Francisella noatunensis subsp. orientalis
str. Toba 04]
Length = 556
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + E ++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISESSVLQ 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|423504811|ref|ZP_17481402.1| ribosomal protein S1 [Bacillus cereus HD73]
gi|449088385|ref|YP_007420826.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|402455333|gb|EJV87116.1| ribosomal protein S1 [Bacillus cereus HD73]
gi|449022142|gb|AGE77305.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVQVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
Length = 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|384179530|ref|YP_005565292.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324325614|gb|ADY20874.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 382
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
gi|375288519|ref|YP_005123060.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
3/99-5]
gi|379715230|ref|YP_005303567.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
gi|383314109|ref|YP_005374964.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
P54B96]
gi|384504528|ref|YP_005681198.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
gi|384506621|ref|YP_005683290.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
gi|384508709|ref|YP_005685377.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
gi|384510800|ref|YP_005690378.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
gi|385807399|ref|YP_005843796.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
gi|386740269|ref|YP_006213449.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
gi|387136462|ref|YP_005692442.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138534|ref|YP_005694513.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
52.97]
gi|387140533|ref|YP_005696511.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
1/06-A]
gi|389850285|ref|YP_006352520.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
gi|341824739|gb|AEK92260.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
gi|348606907|gb|AEP70180.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
42/02-A]
gi|349735012|gb|AEQ06490.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
52.97]
gi|355392324|gb|AER68989.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
1/06-A]
gi|371575808|gb|AEX39411.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
3/99-5]
gi|377653936|gb|AFB72285.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
gi|380869610|gb|AFF22084.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
P54B96]
gi|383804792|gb|AFH51871.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
gi|384476963|gb|AFH90759.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
gi|388247591|gb|AFK16582.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
Length = 487
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 251 AVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|315499365|ref|YP_004088169.1| 30S ribosomal protein S1 [Asticcacaulis excentricus CB 48]
gi|315417377|gb|ADU14018.1| ribosomal protein S1 [Asticcacaulis excentricus CB 48]
Length = 562
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S + R+ AW R+ I EP+ GG ++G FLP +++ R
Sbjct: 84 GEAVISREKARREEAWTRLEAIFNRGEPVMGTIVGRVKGGFTVDMDGASGFLPGSQVDIR 143
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA------TLNLREGTLLE 380
V + L +G+ I +++ ++++S R EA A L EG + +
Sbjct: 144 PVRDIAPL---MGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVGQLAEGEIRD 200
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G VK I YGA + +G + GLLH+++MS RV+ S +LN G+ V+V ++K + PD
Sbjct: 201 GVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVSHPSQVLNVGDSVRVQIIK-INPDTQ 257
Query: 439 KISLSIADLESEP 451
+ISL + L+S+P
Sbjct: 258 RISLGMKQLQSDP 270
>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
gi|365162295|ref|ZP_09358425.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423414716|ref|ZP_17391836.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
gi|423423673|ref|ZP_17400704.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
gi|423429502|ref|ZP_17406506.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
gi|423435084|ref|ZP_17412065.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
gi|423579790|ref|ZP_17555901.1| ribosomal protein S1 [Bacillus cereus VD014]
gi|423588020|ref|ZP_17564107.1| ribosomal protein S1 [Bacillus cereus VD045]
gi|423629542|ref|ZP_17605290.1| ribosomal protein S1 [Bacillus cereus VD154]
gi|423643358|ref|ZP_17618976.1| ribosomal protein S1 [Bacillus cereus VD166]
gi|423654378|ref|ZP_17629677.1| ribosomal protein S1 [Bacillus cereus VD200]
gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|363618608|gb|EHL69952.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401097636|gb|EJQ05658.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
gi|401115363|gb|EJQ23216.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
gi|401121808|gb|EJQ29597.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
gi|401125322|gb|EJQ33082.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
gi|401217245|gb|EJR23939.1| ribosomal protein S1 [Bacillus cereus VD014]
gi|401227757|gb|EJR34286.1| ribosomal protein S1 [Bacillus cereus VD045]
gi|401267409|gb|EJR73469.1| ribosomal protein S1 [Bacillus cereus VD154]
gi|401275362|gb|EJR81329.1| ribosomal protein S1 [Bacillus cereus VD166]
gi|401295889|gb|EJS01512.1| ribosomal protein S1 [Bacillus cereus VD200]
Length = 382
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|340626635|ref|YP_004745087.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
140010059]
gi|433626722|ref|YP_007260351.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140060008]
gi|340004825|emb|CCC43970.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
140010059]
gi|432154328|emb|CCK51560.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140060008]
Length = 481
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|340794195|ref|YP_004759658.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
gi|340534105|gb|AEK36585.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
Length = 486
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E
Sbjct: 74 PGE-VVEIGDEVDALVLTKEDKDGRLILSKKRAQYERAWGTIEELKEKDEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 133 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQELEAKIIELDKQRNNVVLS-RRAW 188
Query: 369 ATL-----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 246
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ + +++SLS+ + +P
Sbjct: 247 SEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|225873902|ref|YP_002755361.1| 30S ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
gi|225793852|gb|ACO33942.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
Length = 637
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311
+P V+ G + + G LLS + R W + + P+ GG
Sbjct: 144 QPKVQPGDTVEVVIEREEAEGGFLLSYEKALRLRVWDTIEKAANEKTPVTGIVAGRVKGG 203
Query: 312 LLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA-- 369
L I G++AFLP ++L + L +G+ + V++ ++N+ ++++S +E
Sbjct: 204 LTVDI-GIKAFLPGSQL--EIRPVRNLDAYIGQPIEVRVIKLNKKRGNVVVSRKEILEEE 260
Query: 370 -------TL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
TL +L EG++L GTVK + YGA + +G + GLLHI++MS R+T DL+
Sbjct: 261 QTAKRSETLEHLEEGSILTGTVKNLTDYGAFVDMGGID--GLLHITDMSWGRLTHPRDLV 318
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
N G+ ++V V+K ++SL L +P L +++
Sbjct: 319 NVGDEIQVKVLKFDRDKQRVSLGFKQLTPDPWLDATER 356
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 368 WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEG 424
W TL + G +EG V+ + +GA I I D GL+H+SN+S T RV S++L +G
Sbjct: 437 WETLGDKYPTGATVEGRVRNLTDFGAFIEIED-GIDGLVHVSNLSWTKRVKHPSEVLKKG 495
Query: 425 ERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKEVH 461
E+V+ +V+ + P+ LS+ + +P ++ + E H
Sbjct: 496 EKVRAVVL-GVEPENRRLSLGIKQLQPDVWETFFEQH 531
>gi|337290612|ref|YP_004629633.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
gi|384515525|ref|YP_005710617.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
gi|397653858|ref|YP_006494541.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
gi|334696726|gb|AEG81523.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
gi|334698918|gb|AEG83714.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
gi|393402814|dbj|BAM27306.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
Length = 487
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 251 AVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|302669602|ref|YP_003829562.1| S1 RNA binding domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302394075|gb|ADL32980.1| S1 RNA binding domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 302
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 83/155 (53%), Gaps = 11/155 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS + + ++W ++ ++K+ + I+VK +E G + +EG+R F+P ++L
Sbjct: 84 NGNILLSKKEANQVLSWDKINELKEADSYIDVKVSEAVKAGCVAFLEGIRGFIPASKLDL 143
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----------AWATLNLREGTLLE 380
+ +L VG+ + V+I +++ N L+LS RE A N+ G + E
Sbjct: 144 QFVEEEDLPNYVGKSLKVKIITADKEANKLVLSAREYLKEQADARRAEMISNVEVGLVTE 203
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT 415
G V+ + YGA + +G+ +GL+HIS + R+
Sbjct: 204 GVVESLQNYGAFVNLGNG-MTGLVHISQICNQRIA 237
>gi|374605724|ref|ZP_09678642.1| RNA-binding S1 domain-containing protein [Paenibacillus
dendritiformis C454]
gi|374388719|gb|EHQ60123.1| RNA-binding S1 domain-containing protein [Paenibacillus
dendritiformis C454]
Length = 406
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 20/199 (10%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR- 331
R +LS R++ + AW ++Q NE EV + GG++ + G+RAF+P A ++ R
Sbjct: 91 RMVLSKRQVDSENAWDVMQQHFDNNEVFEVTVVDVVKGGVVADV-GVRAFIP-ASMVERH 148
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLE 380
V +F++ K GR + V++ I+ + N LILS++E +L EG LE
Sbjct: 149 FVEDFSDYK---GRTLRVKVKEIDRENNKLILSQKEVLDEEFEANKKRVMESLSEGQELE 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-K 439
GTV+++ +GA + +G + GL+H+S M+ V SDL+ EG++V V V+K + K
Sbjct: 206 GTVQRLTQFGAFVDVGGVD--GLVHVSEMAWHHVDKPSDLVQEGQKVNVKVLKVDPANGK 263
Query: 440 ISLSIADLESEPGLFVSDK 458
ISLS+ + P +DK
Sbjct: 264 ISLSMKATQPGPWEQAADK 282
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G+++ V++ +++ + LS + W A ++ G +L G VK++ +GA + +
Sbjct: 247 GQKVNVKVLKVDPANGKISLSMKATQPGPWEQAADKIKTGDILTGEVKRLVDFGAFVEVA 306
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEPG 452
GL+HIS ++ + + S++L +G+ V+V V+ +K +SLSI + E P
Sbjct: 307 -PGVEGLVHISQIAHRHIATPSEVLKQGQTVQVKVLDFNPAEKRVSLSIKETEEAPA 362
>gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
Length = 389
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
++S + + + +W + Q Q E IE E GGL+ + G+R F+P A ++ R V
Sbjct: 82 VVSKKAVAMESSWSDLEQKMQAGEIIEAAVKEVVKGGLVVDV-GVRGFIP-ASMVERHFV 139
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATLN-LREGTLLEGT 382
+F++ K G+ + +++ ++++ N +ILS + + + ++ ++ G +LEGT
Sbjct: 140 EDFSDYK---GKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGT 196
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +G + IG + GL+H+S ++ RV SD++ EG++VKV V+K ++I
Sbjct: 197 VQRMTDFGVFVDIGGVD--GLVHVSELAWNRVDKPSDVVKEGDKVKVKVLKIDRENERIG 254
Query: 442 LSIADLESEPGLFVSD 457
LSI + ++ P V++
Sbjct: 255 LSIKETQAGPWASVAE 270
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
LS + +L +K + Q+ Q+ E + T++ G+ I G+ + +EL
Sbjct: 166 LSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDF---GVFVDIGGVDGLVHVSELA 222
Query: 330 -SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGT 382
+RV+ +++ K G ++ V++ +I+ + + LS +E WA++ + + G++L GT
Sbjct: 223 WNRVDKPSDVV-KEGDKVKVKVLKIDRENERIGLSIKETQAGPWASVAEDFKAGSILNGT 281
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKI 440
VK++ +GA I + GL+HIS ++ RV + S++L EG+ V+V V+ + P +I
Sbjct: 282 VKRLVSFGAFIELA-PGIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVL-DVVPQEQRI 339
Query: 441 SLSIADLESE 450
SLSI +E +
Sbjct: 340 SLSIRAVEED 349
>gi|402553021|ref|YP_006594292.1| 30S ribosomal protein S1 [Bacillus cereus FRI-35]
gi|401794231|gb|AFQ08090.1| 30S ribosomal protein S1 [Bacillus cereus FRI-35]
Length = 382
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|395237266|ref|ZP_10415353.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|423350857|ref|ZP_17328509.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|394487499|emb|CCI83441.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|404387158|gb|EJZ82283.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
Length = 481
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVELGDEVDALVLTKEDKDGRLILSKKRAQYERAWGDIERLKENDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G + +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLEPYIGAELEAKIIELDKHRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
N G+ V V V+ + +++SLS+ + +P
Sbjct: 251 NVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
Length = 382
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIIELDREKNRVILSHKAVVELELDSQKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|427391803|ref|ZP_18886027.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
gi|425731770|gb|EKU94583.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
Length = 497
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR LLS +R + AW ++ +IK+ + + E GGL+ I GLR FLP + L
Sbjct: 101 GRLLLSKKRAQYERAWKQIEKIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPAS--LVE 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-----------LNLREGTLLE 380
+ +L+ VGR + ++ ++++ N+++LS R AW L +G + E
Sbjct: 158 MRRVRDLQPYVGRELEAKVIELDKNRNNVVLS-RRAWLEETQSQVRADFLAGLHKGQIRE 216
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++
Sbjct: 217 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDLDRER 274
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 275 VSLSLKATQEDP 286
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG+++ V++ ++ D + LS + + W + G ++ G V KI P+GA +R+
Sbjct: 257 VGQKVNVEVLDVDLDRERVSLSLKATQEDPWQSFARTHAIGQVVPGKVTKIVPFGAFVRV 316
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
D GL+HIS ++ V + +++ GE + V V+ + +ISLS+
Sbjct: 317 ED-GIEGLVHISELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSL 365
>gi|375101674|ref|ZP_09747937.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
gi|374662406|gb|EHR62284.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
Length = 493
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 84 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 143
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R
Sbjct: 144 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQ 200
Query: 371 -------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 201 SEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVE 258
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 259 VGQEVTVEVLDVDMDRERVSLSLKATQEDP 288
>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1 [Melissococcus plutonius ATCC 35311]
gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
Length = 408
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 18/200 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + IE T+ GGL+ + G+R F+P + +
Sbjct: 94 NGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKGGLVVDV-GVRGFVPASMVED 152
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLL 379
V++F+E K G+ + V+I I N LILS + + +L G ++
Sbjct: 153 HFVSDFSEYK---GKTLAVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIV 209
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG + ++ +GA I +G + GL+H+S ++ V SD L GE V V ++ S+ PD+
Sbjct: 210 EGKIARLTDFGAFIDLGGID--GLVHVSEIAHNHVDKPSDTLTIGEDVNVKIL-SINPDE 266
Query: 440 ISLSIADLESEPGLFVSDKE 459
+S++ E+ PG + + +E
Sbjct: 267 GRISLSIKETLPGAWTNIEE 286
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRK-MAWHRVRQIKQLN--EPIEVKFTEWN 308
F+E G+TL+ R +LS + + A +V + L+ + +E K
Sbjct: 158 FSEYKGKTLAVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLT 217
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-- 366
G + G+ + +E+ + +G + V+I IN D + LS +E
Sbjct: 218 DFGAFIDLGGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIKETL 277
Query: 367 --AWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
AW + + G++LEGTVK++ +GA + + GL+HIS +S + + ++L+
Sbjct: 278 PGAWTNIEEKAPVGSILEGTVKRLTSFGAFVEVF-PGVEGLVHISQISHKHIATPHEVLH 336
Query: 423 EGERVKVLVVKSMFPD-KISLSIADLESEP 451
EG+ ++V V++ D +++LSI LE++P
Sbjct: 337 EGDDIQVKVLEVHPEDHRLALSIKALETKP 366
>gi|383831036|ref|ZP_09986125.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
gi|383463689|gb|EID55779.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
Length = 493
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 84 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGL 143
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R
Sbjct: 144 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQ 200
Query: 371 -------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 201 SEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVE 258
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 259 VGQEVTVEVLDVDMDRERVSLSLKATQEDP 288
>gi|431794256|ref|YP_007221161.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784482|gb|AGA69765.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 661
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL-S 330
G PLLS RR A R+++ + + I+ K E GGL+ + G+R F+P +++
Sbjct: 360 GNPLLSKRRADEFAAADRLKEYAETKQEIQGKVAEVVKGGLIVDV-GMRGFVPASQIQPG 418
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLE 380
V + + K G+ + +++ + ++LS++E L+EG ++
Sbjct: 419 YVEDLNQFK---GQTLRLRVIEFDPSKRRVVLSQKEILQEELAVKKEQLLGTLQEGDVIS 475
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
GTVK++ +GA I +G + GLLH+S+++ TR+ S+ +N G+ V+V V+K K
Sbjct: 476 GTVKRLAQFGAFIDLGGVD--GLLHVSDIAYTRIKHPSEYVNVGDEVEVQVLKVDKEQGK 533
Query: 440 ISLSIADLESEP 451
ISL + L+ P
Sbjct: 534 ISLGLKQLKPSP 545
>gi|423647524|ref|ZP_17623094.1| ribosomal protein S1 [Bacillus cereus VD169]
gi|401285478|gb|EJR91317.1| ribosomal protein S1 [Bacillus cereus VD169]
Length = 382
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFVPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|253581079|ref|ZP_04858339.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847615|gb|EES75585.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 302
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET 257
G +LT V+ + +KE+ + DLK AE GI+ +D G S + V
Sbjct: 22 GDILTGTVISVDEKEV---VVDLKYYAE--------GIIPAEDYSREPGFSL--KEQVNV 68
Query: 258 GTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI 316
G + A V+ + +G LLS +AW +++++K E I+V GG++ +
Sbjct: 69 GDEVSATVVRKDDGNGNILLSRTEAADVLAWDKLKELKDSKEVIDVVVKGIVNGGVIAYV 128
Query: 317 EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-------- 368
EG+R F+P ++L +N + E + + + VQ+ I+++ LILS +E
Sbjct: 129 EGVRGFIPASKL--ALNYVEDTNEYLNKPIQVQVFDIDKEKGRLILSAKEILREKAEEER 186
Query: 369 --ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGE 425
N++ G + EG V+ + PYGA + +G+ SGL+HIS + R+ S++L G+
Sbjct: 187 KTKISNVQVGLVTEGVVESLQPYGAFVDLGN-GLSGLVHISQICEKRIKKPSEVLTVGD 244
>gi|385676805|ref|ZP_10050733.1| 30S ribosomal protein S1 [Amycolatopsis sp. ATCC 39116]
Length = 498
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 112/214 (52%), Gaps = 18/214 (8%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV G + A VL + GR +LS +R + AW + ++K+ +EP++ E
Sbjct: 81 PGE-VVSVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVV 139
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R
Sbjct: 140 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYL 196
Query: 369 AT---------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
LN L +G + +G V I +GA + +G + GL+H+S +S + S
Sbjct: 197 EQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPS 254
Query: 419 DLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+++ G+ V V V+ M +++SLS+ + +P
Sbjct: 255 EVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDP 288
>gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11]
gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|281491326|ref|YP_003353306.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis KF147]
gi|385830375|ref|YP_005868188.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
gi|385838684|ref|YP_005876314.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris A76]
gi|389854887|ref|YP_006357131.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|418039269|ref|ZP_12677575.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11]
gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
gi|354692385|gb|EHE92215.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|358749912|gb|AEU40891.1| SSU ribosomal protein S1p [Lactococcus lactis subsp. cremoris A76]
gi|374672879|dbj|BAL50770.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis IO-1]
Length = 408
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 109/209 (52%), Gaps = 27/209 (12%)
Query: 260 VLFAEVLGRTLSGRP--LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ +++G+ G LLS +RL + AW ++ + E + VK T+ GGL
Sbjct: 71 LVIKQIVGKEAEGANVYLLSLKRLEARKAWTQLEG--KEGEIVTVKVTKDVKGGLSVDYN 128
Query: 318 GLRAFLPKAELLSRVNNF--TELKEKVGRRMYVQITRINEDTNDLILSER---------- 365
G+R F+P S ++ + + K+ VG + +I +N N ILS R
Sbjct: 129 GVRGFIPA----SMIDTYFVKDTKKFVGEEIEAKIIEVNASENRFILSRRAVVEAEAIEM 184
Query: 366 --EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
EA+A L+EG ++EGTV ++ +GA + +G + GL+H+S +S +R+ SD +
Sbjct: 185 RKEAFA--QLQEGDIVEGTVSRVTNFGAFVDLGGID--GLVHVSELSHSRIKRPSDAVKP 240
Query: 424 GERVKVLVVKSMFPDKISLSIADLESEPG 452
G+ V V ++K + P+ LS++ ++PG
Sbjct: 241 GDVVNVKILK-LDPEAGRLSLSLKATQPG 268
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V+I +++ + L LS + W + + G+ +EGTVK++ +GA +
Sbjct: 239 KPGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--RVKVLVVKSMFPDKISLSIADLESEPG 452
+ GL+H+S +S RV + D+L G+ VKVL VK ++ISLSI LE P
Sbjct: 299 LY-PGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPA-EERISLSIKALEEAPA 356
>gi|295398579|ref|ZP_06808611.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563]
gi|294973180|gb|EFG48975.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563]
Length = 428
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 101/194 (52%), Gaps = 20/194 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RR+ K W + + E I V GGL+ G+R F+P A ++
Sbjct: 94 NGSFLLSRRRIEAKKVWAELEVKAENGEIITVPVKSVVKGGLVVDA-GVRGFIP-ASMVE 151
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA---------TLN-LREGTL 378
V++F+ K G+ + V+I I+ N LILS +E A LN +EG
Sbjct: 152 DFFVDDFSPYK---GQELEVKIVEIDPSENRLILSHKEIAAEKRIAERAEKLNSFQEGDK 208
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
+ GTV ++ +GA I +G + GL+HIS +++ V SD+L+EG+ V+VLV+
Sbjct: 209 VTGTVARLANFGAFIDLGGID--GLVHISQIAQAHVNHPSDVLSEGQEVEVLVLSVDEER 266
Query: 438 DKISLSIADLESEP 451
+ISLSI L+ P
Sbjct: 267 GRISLSIKALQPGP 280
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSERE----AWATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G+ + V + ++E+ + LS + W + + +G LEGTV+++ +GA + +
Sbjct: 252 GQEVEVLVLSVDEERGRISLSIKALQPGPWENIEEKAPKGAELEGTVRRLVDFGAFVEVF 311
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
GL+HIS +S V + + L EG+ ++V V+ +++SLSI LE P
Sbjct: 312 -PGVEGLVHISQISHDHVATPGEKLTEGQAIQVKVLDVDAENERLSLSIKALEEAP 366
>gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
Length = 473
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 18/224 (8%)
Query: 254 VVETGTVLFAEVLGRTLS-GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
++E G+ + A V + S GR +LS +R + AW + +IK + + K E GGL
Sbjct: 72 LLEVGSTVEALVFQKEDSQGRLILSKKRAQYEKAWSDLEKIKDSDLTVTGKVIEIVRGGL 131
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------- 365
+ I GLR FLP + L + +L +G + ++ ++ N+++LS R
Sbjct: 132 IVDI-GLRGFLPAS--LIDIRRVRDLSSYLGMEIEAKVLELDRQRNNVVLSRRVLLEQNQ 188
Query: 366 -EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
EA +L NL +G + +GTV I +GA + +G + GL+HIS +S VT S++L
Sbjct: 189 SEARTSLFGNLHKGQVRKGTVSSIVSFGAFVDLGGID--GLVHISEISWKHVTQPSEVLK 246
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP-GLFVSDKEVHIIF 464
GE V V +++ ++SLS+ + +P +F D + I
Sbjct: 247 VGEEVTVEILEVDSERHRVSLSLRATQEDPWQVFAHDHAIGQIM 290
>gi|427706259|ref|YP_007048636.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427358764|gb|AFY41486.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 300
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W ++ Q+++ ++ I+V+ T N GG+ + LR F+P++ L R
Sbjct: 96 GQVTLSRRQLEIQHIWEKLVQMQENSQTIQVRVTGVNKGGVTVDFQSLRGFIPRSHLAER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N LK G + ++ ++ L+LS+R A + N L G L+EG + I P
Sbjct: 156 -DNLEALK---GHTLTAGFLEVDRNSKKLVLSQRLATRSSNFSLLEIGQLVEGKITGIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + + S LLHI +S+ + S+ + G+ +K +++ ++++S L
Sbjct: 212 FGVFVDL--NGMSALLHIKQVSQKFIESLEKVFQVGQTIKAVIIDLDEGKGRVAISTRIL 269
Query: 448 ESEPG 452
E+ PG
Sbjct: 270 ENFPG 274
>gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
Length = 405
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + +W + + + EV + GGL+ + G R F+P A ++ R V
Sbjct: 91 VLSKRAIDTENSWEELEKHFADQDVFEVTVADVVKGGLVADV-GARGFIP-ASMVERHFV 148
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGT 382
+F++ K GR + V++ ++ + N +ILS+++ L++G +LEGT
Sbjct: 149 EDFSDYK---GRTLRVKVKELDRENNKVILSQKDVLEEEFESNKQKVMSELQDGQVLEGT 205
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ + V +D+L+EG++V+V V+K + P+K +
Sbjct: 206 VQRLTQFGAFVDVGGVD--GLVHVSEIAWSHVEKPADVLSEGDQVRVKVLK-VDPEKGKI 262
Query: 443 SIADLESEPG 452
S++ + PG
Sbjct: 263 SLSIKAAAPG 272
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W T G ++ G VK++ +GA + +
Sbjct: 245 GDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELA 304
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPG 452
GL+HIS +S + + ++L EG+ V+V V+ + ++SLSI + E P
Sbjct: 305 -PGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRVSLSIKETEEAPA 360
>gi|452959839|gb|EME65170.1| 30S ribosomal protein S1 [Amycolatopsis decaplanina DSM 44594]
Length = 499
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP + L
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 161
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 162 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 221
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 222 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 279
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 280 SLSLKATQEDP 290
>gi|423397689|ref|ZP_17374890.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
gi|401649735|gb|EJS67313.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
Length = 382
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKVGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLATFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|256851010|ref|ZP_05556399.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
gi|260661222|ref|ZP_05862136.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
gi|256616072|gb|EEU21260.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
gi|260548159|gb|EEX24135.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
Length = 402
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ ++++ + IE T GGL+ + G R FLP A
Sbjct: 82 GDKENGEFFFSVTRLKEREAFDKLQKDYEAGNAIEGTVTSSVRGGLIVNV-GTRGFLP-A 139
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLRE 375
L+S N+F ++LK +G+ + V+IT I+ + N LILS +E L
Sbjct: 140 SLIS--NHFVSDLKPYIGKTIKVKITEIDPNKNRLILSHKELIEEEREEAFETVASQLVA 197
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +GA + +G + GL+HIS +S + SD+L G+ VKV V+ +
Sbjct: 198 GDIVEGKVSRLTNFGAFVDVGGVD--GLVHISEISYKHIDKPSDVLKTGQDVKVKVI-GI 254
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 255 DDDRHRISLSIKQTEPSPF 273
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTVKKIYPYGAQIR 394
K G+ + V++ I++D + + LS ++ AT L EG ++EG VK + +GA +
Sbjct: 242 KTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFVE 301
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451
+ D + GL+H+S +S RV SD+L GE VKV V+ S+ PD+ +S++ +++P
Sbjct: 302 VADGIQ-GLVHVSEISNKRVEKPSDVLKVGETVKVKVL-SINPDEKRISLSIKQAQP 356
>gi|414074052|ref|YP_006999269.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413973972|gb|AFW91436.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 408
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 109/209 (52%), Gaps = 27/209 (12%)
Query: 260 VLFAEVLGRTLSGRP--LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ +++G+ G LLS +RL + AW ++ + E + VK T+ GGL
Sbjct: 71 LVIKQIVGKEAEGANVYLLSLKRLEARKAWTQLEG--KEGEIVTVKVTKDVKGGLSVDYN 128
Query: 318 GLRAFLPKAELLSRVNNF--TELKEKVGRRMYVQITRINEDTNDLILSER---------- 365
G+R F+P S ++ + + K+ VG + +I +N N ILS R
Sbjct: 129 GVRGFIPA----SMIDTYFVKDTKKFVGEEIEAKIIEVNASENRFILSRRAVVEAEAIEM 184
Query: 366 --EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
EA+A L+EG ++EGTV ++ +GA + +G + GL+H+S +S +R+ SD +
Sbjct: 185 RKEAFA--QLQEGDIVEGTVSRVTNFGAFVDLGGID--GLVHVSELSHSRIKRPSDAVKP 240
Query: 424 GERVKVLVVKSMFPDKISLSIADLESEPG 452
G+ V V ++K + P+ LS++ ++PG
Sbjct: 241 GDVVNVKILK-LDPEAGRLSLSLKATQPG 268
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V+I +++ + L LS + W + + G+ +EGTVK++ +GA +
Sbjct: 239 KPGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVE 298
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--RVKVLVVKSMFPDKISLSIADLESEPG 452
+ GL+H+S +S RV + D+L G+ VKVL VK ++ISLSI LE P
Sbjct: 299 LY-PGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPA-EERISLSIKALEEAPA 356
>gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27]
gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27]
Length = 473
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 18/224 (8%)
Query: 254 VVETGTVLFAEVLGRTLS-GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
++E G+ + A V + S GR +LS +R + AW + +IK + + K E GGL
Sbjct: 72 LLEVGSTVEALVFQKEDSQGRLILSKKRAQYEKAWSDLEKIKDSDLTVTGKVIEIVRGGL 131
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------- 365
+ I GLR FLP + L + +L +G + ++ ++ N+++LS R
Sbjct: 132 IVDI-GLRGFLPAS--LIDIRRVRDLSSYLGMEIEAKVLELDRQRNNVVLSRRVLLEQNQ 188
Query: 366 -EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
EA +L NL +G + +GTV I +GA + +G + GL+HIS +S VT S++L
Sbjct: 189 SEARTSLFGNLHKGQVRKGTVSSIVSFGAFVDLGGID--GLVHISEISWKHVTQPSEVLK 246
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP-GLFVSDKEVHIIF 464
GE V V +++ ++SLS+ + +P +F D + I
Sbjct: 247 VGEEVTVEILEVDSERHRVSLSLRATQEDPWQVFAHDHAIGQIM 290
>gi|403069996|ref|ZP_10911328.1| 30S ribosomal protein S1 [Oceanobacillus sp. Ndiop]
Length = 377
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS + + + AW + + + E E E GGL+ + GLR F+P + L +
Sbjct: 77 ILSKKAVDSESAWEDLEKKYESGEVFETVVKEIVKGGLVVDV-GLRGFIPAS--LVETHF 133
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSER-----EAWATLN-----LREGTLLEGTVK 384
+ E + + + V+I ++ D N +ILS R EA A N + G ++EGTV+
Sbjct: 134 VEDFSEYLNKPLTVKIADLDRDQNRIILSHRAVAEEEASAKKNDILQSIEAGQVMEGTVQ 193
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444
+I +GA + +G + GL+HIS ++ V SD+++EG+++KV ++ S+ D +S+
Sbjct: 194 RITSFGAFVDLGGVD--GLVHISQLAHEHVAKASDVVSEGDKIKVEIL-SVDRDNERISL 250
Query: 445 ADLESEPG 452
+ + PG
Sbjct: 251 SHKNTLPG 258
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G ++ V+I ++ D + LS + W + R G+ +EGTVK++ +GA + I
Sbjct: 231 GDKIKVEILSVDRDNERISLSHKNTLPGPWTDIQSRVASGSTIEGTVKRLVNFGAFVEIL 290
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
GL+HIS ++ + + ++L G++V V V+ + ++ISLSI
Sbjct: 291 -PGVEGLVHISQIANRHIATPQEVLEVGQKVNVKVLDVNEEEERISLSI 338
>gi|423408547|ref|ZP_17385696.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
gi|401657637|gb|EJS75145.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
Length = 382
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKVGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLATFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|379727435|ref|YP_005319620.1| 30S ribosomal protein S1p [Melissococcus plutonius DAT561]
gi|376318338|dbj|BAL62125.1| 30S ribosomal protein S1p [Melissococcus plutonius DAT561]
Length = 408
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 18/200 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + IE T+ GGL+ + G+R F+P + +
Sbjct: 94 NGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKGGLVVDV-GVRGFVPASMVED 152
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLL 379
V++F+E K G+ + V+I I N LILS + + +L G ++
Sbjct: 153 HFVSDFSEYK---GKTLAVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIV 209
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG + ++ +GA I +G + GL+H+S ++ V SD L GE V V ++ S+ PD+
Sbjct: 210 EGKIARLTDFGAFIDLGGID--GLVHVSEIAHNHVDKPSDTLTIGEDVNVKIL-SINPDE 266
Query: 440 ISLSIADLESEPGLFVSDKE 459
+S++ E+ PG + + +E
Sbjct: 267 GRISLSIKETLPGAWTNIEE 286
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRK-MAWHRVRQIKQLN--EPIEVKFTEWN 308
F+E G+TL+ R +LS + + A +V + L+ + +E K
Sbjct: 158 FSEYKGKTLAVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLT 217
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-- 366
G + G+ + +E+ + +G + V+I IN D + LS +E
Sbjct: 218 DFGAFIDLGGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIKETL 277
Query: 367 --AWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
AW + + G++LEGTVK++ +GA + + GL+HIS +S + + ++L+
Sbjct: 278 PGAWTNIEEKAPVGSILEGTVKRLTSFGAFVEVF-PGVEGLVHISQISHKHIATPHEVLH 336
Query: 423 EGERVKVLVVKSMFPD-KISLSIADLESEP 451
EG+ ++V V++ D +++LSI LE++P
Sbjct: 337 EGDDIQVKVLEVHPKDHRLALSIKALETKP 366
>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
gi|183982447|ref|YP_001850738.1| 30S ribosomal protein S1 [Mycobacterium marinum M]
gi|443491265|ref|YP_007369412.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
gi|442583762|gb|AGC62905.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
Length = 481
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW LN L++GT+ +
Sbjct: 155 MRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLQKGTIRK 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 214 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRER 271
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 272 VSLSLKATQEDP 283
>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
gi|448823792|ref|YP_007416958.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
gi|448277289|gb|AGE36713.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
Length = 486
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q+K+ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEQLKENDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAW 368
+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R E
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAYLEETQ 193
Query: 369 ATL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
+ + L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SAVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVT 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 252 VGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
G ++ G V K+ P+GA +R+ + GL+HIS ++ V ++N GE V V V+
Sbjct: 292 GQIVPGKVTKLVPFGAFVRV-EEGIEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDID 350
Query: 435 MFPDKISLSI 444
+ +ISLS+
Sbjct: 351 LERRRISLSL 360
>gi|390453457|ref|ZP_10238985.1| 30S ribosomal protein S1 [Paenibacillus peoriae KCTC 3763]
Length = 408
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + AW ++ Q+ E EV + GG++ + G+R F+P A ++ R V
Sbjct: 92 VLSKRAIDSENAWEKLEQLFGSKEVFEVVVNDVVKGGIVVDV-GVRGFIP-ASMVERHFV 149
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGT 382
+F++ K GR + V + ++ + N +ILS+++ L+EG + GT
Sbjct: 150 EDFSDYK---GRTLRVVVKELDRENNKVILSQKDVLEAEFEANKQKVMAELKEGQEIVGT 206
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+H+S ++ T V SD ++EG++VKV V+K + P+K +
Sbjct: 207 VQRLTQFGAFVDVGGVD--GLVHVSEIAWTHVDKPSDAVSEGDQVKVKVLK-VDPEKGKI 263
Query: 443 SIADLESEPG 452
S++ ++PG
Sbjct: 264 SLSMKAAQPG 273
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIG 396
G ++ V++ +++ + + LS + A W A ++ G VK++ +GA + I
Sbjct: 246 GDQVKVKVLKVDPEKGKISLSMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIA 305
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
GL+HIS +S + + ++L EG+ VKV +++ M P ++SLSI + E P
Sbjct: 306 -PGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILE-MNPSEKRVSLSIKETEEAP 360
>gi|328951609|ref|YP_004368944.1| RNA binding S1 domain-containing protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451933|gb|AEB12834.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
14884]
Length = 551
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 19/197 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS +R AW +V ++ + EP+EV E GGL+T IEGLRAFLP +++ + RVN
Sbjct: 114 VLSKKRADADKAWRKVVELYENGEPVEVTIREKVRGGLVTYIEGLRAFLPASQVDIKRVN 173
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+ VG+ + V+I ++ +ILS R +L G +EG V
Sbjct: 174 DLDGF---VGQTLPVKIIELSRKKGRIILSRRVLLEEEQKRLRQQVLQSLEPGQEVEGAV 230
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKIS 441
++ +G + +G + GL+H S ++ R +++ G++V+ V+ S+ P ++++
Sbjct: 231 VEVTEFGVFVNLGHID--GLVHRSELTWGRFEHPREVVQVGDQVRARVL-SVDPERERVN 287
Query: 442 LSIADLESEPGLFVSDK 458
LSI L +P VS++
Sbjct: 288 LSIKALTPDPWETVSER 304
>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
Length = 497
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP + L
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 161
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 162 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 221
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 222 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 279
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 280 SLSLKATQEDP 290
>gi|451336997|ref|ZP_21907548.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
gi|449420339|gb|EMD25826.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
Length = 499
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP + L
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 161
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 162 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 221
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 222 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 279
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 280 SLSLKATQEDP 290
>gi|187932250|ref|YP_001892235.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187713159|gb|ACD31456.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 556
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + + W R+ + + NE + K T GG +EGLRAFLP + + +R
Sbjct: 80 GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
+ + L++K + +++ +I+ N++++S + N + E ++L+
Sbjct: 140 PIKDVAHLEDK---DIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISESSVLK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +GA I +G + GLLHI+++S +R++ +D+L+ G+ + V V+K +
Sbjct: 197 GIVKNITDFGAFIDLGGVD--GLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL I L +P L ++++
Sbjct: 255 ISLGIKQLGEDPWLNIANE 273
>gi|431797451|ref|YP_007224355.1| 30S ribosomal protein S1 [Echinicola vietnamensis DSM 17526]
gi|430788216|gb|AGA78345.1| ribosomal protein S1 [Echinicola vietnamensis DSM 17526]
Length = 592
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKAKMVRAWQDIEDALEYDNVIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDVYVGKKMEVKVVKINHANDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+V+V+ F D
Sbjct: 217 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQVVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|311068805|ref|YP_003973728.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
gi|419820553|ref|ZP_14344163.1| 30S ribosomal protein S1 [Bacillus atrophaeus C89]
gi|310869322|gb|ADP32797.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
gi|388475369|gb|EIM12082.1| 30S ribosomal protein S1 [Bacillus atrophaeus C89]
Length = 382
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 24/192 (12%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEEKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLEG 381
+FT+ K GR + + + ++ D N +ILS R E TL + G++LEG
Sbjct: 139 DFTDYK---GRTLTLIVVELDRDKNRVILSHRAVVEKEQTNKKQEFLQTLEV--GSVLEG 193
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++I
Sbjct: 194 KVQRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERI 251
Query: 441 SLSIADLESEPG 452
SLSI E+ PG
Sbjct: 252 SLSIK--ETLPG 261
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + GRTL+ R +LS R + K ++ ++ Q + +E K
Sbjct: 140 FTDYKGRTLTLIVVELDRDKNRVILSHRAVVEKEQTNKKQEFLQTLEVGSVLEGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + +++G +LEG V+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKKGDVLEGKVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQDVKVKVLDVNEGEERISLSMRELEEAP 348
>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
gi|384151397|ref|YP_005534213.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|399539858|ref|YP_006552520.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
gi|340529551|gb|AEK44756.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|398320628|gb|AFO79575.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
Length = 499
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP++ E GGL+ I GLR FLP + L
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 161
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 162 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 221
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 222 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 279
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 280 SLSLKATQEDP 290
>gi|15964008|ref|NP_384361.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021]
gi|334318282|ref|YP_004550901.1| 30S ribosomal protein S1 [Sinorhizobium meliloti AK83]
gi|384538134|ref|YP_005722219.1| 30S ribosomal protein S1 [Sinorhizobium meliloti SM11]
gi|407722595|ref|YP_006842257.1| 30S ribosomal protein S1 [Sinorhizobium meliloti Rm41]
gi|418403925|ref|ZP_12977401.1| 30S ribosomal protein S1 [Sinorhizobium meliloti CCNWSX0020]
gi|433612043|ref|YP_007188841.1| ribosomal protein S1 [Sinorhizobium meliloti GR4]
gi|7404449|sp|P14129.2|RS1_RHIME RecName: Full=30S ribosomal protein S1
gi|15073184|emb|CAC41692.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021]
gi|334097276|gb|AEG55287.1| ribosomal protein S1 [Sinorhizobium meliloti AK83]
gi|336035026|gb|AEH80958.1| 30S ribosomal protein S1 [Sinorhizobium meliloti SM11]
gi|359502131|gb|EHK74717.1| 30S ribosomal protein S1 [Sinorhizobium meliloti CCNWSX0020]
gi|407320827|emb|CCM69431.1| 30S ribosomal protein S1 [Sinorhizobium meliloti Rm41]
gi|429550233|gb|AGA05242.1| ribosomal protein S1 [Sinorhizobium meliloti GR4]
Length = 568
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGTLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWQRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++LN G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILNIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-NIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|410459394|ref|ZP_11313145.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
gi|409930370|gb|EKN67371.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
Length = 377
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS + + + AW + + E E + + GGL+ I G+R F+P A L+ R V
Sbjct: 80 ILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKGGLVVDI-GVRGFIP-ASLVERHFV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATLN-LREGTLLEGT 382
+F+E K GR + +++ I+ + N +ILS R + T++ L+ G +LEGT
Sbjct: 138 EDFSEYK---GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQQTIDALKVGQVLEGT 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +G + IG + GL+HIS ++ V +D++ EG++VKV V+ S+ D +
Sbjct: 195 VQRLADFGVFVDIGGID--GLVHISQLAHQHVDKPADVVAEGQKVKVKVL-SIDKDNERI 251
Query: 443 SIADLESEPG 452
S++ E+ PG
Sbjct: 252 SLSIKETLPG 261
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLREGTLLEGTVKKIYPYGAQIRIGDS 398
G+++ V++ I++D + LS +E W + + G + GTVK++ +GA + +
Sbjct: 234 GQKVKVKVLSIDKDNERISLSIKETLPGPWDLIEYKRGDEVSGTVKRLVNFGAFVEVA-P 292
Query: 399 NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD-LESEP 451
N GL+HIS +S + + ++L EGE+VKV ++ + +ISLSI + LE +P
Sbjct: 293 NVEGLVHISQISNRHIATPHEVLKEGEKVKVKILDINKENQRISLSIKELLEEDP 347
>gi|283797557|ref|ZP_06346710.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1]
gi|291074928|gb|EFE12292.1| S1 RNA binding domain protein [Clostridium sp. M62/1]
gi|295090842|emb|CBK76949.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10]
Length = 311
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 127/264 (48%), Gaps = 28/264 (10%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET 257
G +LT V+ + D + ++ DLK AE + R + DD M G + +
Sbjct: 38 GDILTGTVIGVTDSQ---VIVDLKYYAEGIIRRED---ITDDPDYNMQEEIHVGDEI--S 89
Query: 258 GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
GTV+ A+ G LLS + + W + ++ + + VK E GG+ +E
Sbjct: 90 GTVIKAD----DGEGNILLSRKSANDTLVWEKFERMLEERTVVPVKVAEVVNGGVTAYLE 145
Query: 318 GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE- 375
G+R F+P ++L S V N L E VG+ + V + + +D L+LS RE E
Sbjct: 146 GVRGFIPASKLAASYVEN---LDEWVGKTVEVTVITVEKDRKKLVLSGREVAREKERAEK 202
Query: 376 ---------GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
G ++EGTV + YGA + + ++ SGL+HIS +S R+ +L EG+
Sbjct: 203 RKKIEKCEVGAVMEGTVDTLKDYGAFVTL-ENGLSGLVHISRISSQRIKHPGVVLKEGQT 261
Query: 427 VKVLVVKSMFPDKISLSIADLESE 450
VKV ++ + KISLS+ D E E
Sbjct: 262 VKVKII-GIKDGKISLSMKDAEPE 284
>gi|150398644|ref|YP_001329111.1| 30S ribosomal protein S1 [Sinorhizobium medicae WSM419]
gi|150030159|gb|ABR62276.1| ribosomal protein S1 [Sinorhizobium medicae WSM419]
Length = 568
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGTLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWQRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++LN G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILNIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-NIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|197303158|ref|ZP_03168201.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC
29176]
gi|197297761|gb|EDY32318.1| putative 30S ribosomal protein S1 [Ruminococcus lactaris ATCC
29176]
Length = 229
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+RV++ + + VK GG++ +EGLR F+P + L ++ +L+ + + +
Sbjct: 31 WNRVKEYLEKKTVLPVKVEGVVNGGVIVMVEGLRGFVPASRL--SLSYIEDLETYLLKDI 88
Query: 347 YVQITRINEDTNDLILSEREAWA----------TLNLREGTLLEGTVKKIYPYGAQIRIG 396
VQ+ +++ N L+LS RE +++ G++L+GTV+ + YGA +++
Sbjct: 89 EVQVIDVDQANNRLVLSARELLKEKEKKAREALIASIQVGSVLKGTVETLQNYGAFVKL- 147
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
++ SGL+H+S +S+ RV SD+L G+ V+V V+ + KISLS+ L
Sbjct: 148 ENGLSGLVHVSQISQKRVKLPSDVLEVGQEVEVKVI-GIKDGKISLSMKAL 197
>gi|30019646|ref|NP_831277.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 14579]
gi|229126911|ref|ZP_04255922.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
gi|296502167|ref|YP_003663867.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
gi|29895190|gb|AAP08478.1| SSU ribosomal protein S1P [Bacillus cereus ATCC 14579]
gi|228656511|gb|EEL12338.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
gi|296323219|gb|ADH06147.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
Length = 382
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVIVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|422869378|ref|ZP_16915898.1| putative ribosomal protein S1 [Enterococcus faecalis TX1467]
gi|329571715|gb|EGG53396.1| putative ribosomal protein S1 [Enterococcus faecalis TX1467]
Length = 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + Q Q + IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEEIEQDFQAGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F+E K G+ + +I I N LILS + +L +G ++
Sbjct: 152 HFVADFSEYK---GQTLAFKIIEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG V ++ +GA I +G + GL+H+S ++ V SD L GE V+V ++ S+ P++
Sbjct: 209 EGKVARLTDFGAFIDLGGVD--GLVHVSEIAHQHVGKPSDALTVGEDVQVKIL-SINPEE 265
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 266 GRISLSIKETLPG 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V+I IN + + LS +E W + + GT+L+GTVK++ +GA + +
Sbjct: 250 VGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
GL+HIS +S + + ++L+EG++V+V V++ + P+ +I+LSI LE
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLE-VNPEEHRIALSIKALE 362
>gi|347753863|ref|YP_004861427.1| 30S ribosomal protein S1 [Candidatus Chloracidobacterium
thermophilum B]
gi|347586381|gb|AEP10911.1| SSU ribosomal protein S1P [Candidatus Chloracidobacterium
thermophilum B]
Length = 562
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 55/298 (18%)
Query: 172 PGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRG 231
PGD V+G VVS E + V++G G ++ KE D E L + + E MV+
Sbjct: 25 PGDIVVGQVVSITERGVVVDIGFKSEG-LVPKEEFTGPDGE----LTVARGASVEVMVK- 78
Query: 232 KMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVR 291
+ GG G + E LS R W +
Sbjct: 79 -----------QIEGGDG------------YVE-----------LSYADARRHHLWEVIE 104
Query: 292 QIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQIT 351
+ N+ + K TE GGL + G++AFLP ++ + + L +GR M +I
Sbjct: 105 KAFTENQTVTGKITERTKGGLQVDLGGIKAFLPGSQ--ADIRPLRNLDALIGREMTFRIL 162
Query: 352 RINEDTNDLILSE----------REAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRS 401
++N+ N+++LS R+A L E ++ G VK + YGA I +G +
Sbjct: 163 KLNKKRNNIVLSRKVLLEEEMTARKAETLRMLDENVIVSGQVKNLTDYGAFIDLGGID-- 220
Query: 402 GLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
GLLH+++MS R+ SD+ N G+ ++V V+K +++SL L +P V+++
Sbjct: 221 GLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYKQLLPDPWDTVTER 278
>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
gi|417007625|ref|ZP_11945400.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
Length = 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + IE T
Sbjct: 63 RDLVKLGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +G I +G + GL+HIS +S V
Sbjct: 180 IEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VK+ V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKAGQDVKIKVI-GIDDDRHRISLSIKQTEPSPF 273
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + K G+ + +++ I++D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583]
gi|227518739|ref|ZP_03948788.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104]
gi|227553349|ref|ZP_03983398.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22]
gi|229545836|ref|ZP_04434561.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322]
gi|255975865|ref|ZP_05426451.1| SSU ribosomal protein S1P [Enterococcus faecalis T2]
gi|256619051|ref|ZP_05475897.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200]
gi|256762477|ref|ZP_05503057.1| SSU ribosomal protein S1P [Enterococcus faecalis T3]
gi|256853113|ref|ZP_05558483.1| ribosomal protein S1 [Enterococcus faecalis T8]
gi|256958968|ref|ZP_05563139.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5]
gi|256961939|ref|ZP_05566110.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96]
gi|256965137|ref|ZP_05569308.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704]
gi|257078999|ref|ZP_05573360.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1]
gi|257082562|ref|ZP_05576923.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol]
gi|257085195|ref|ZP_05579556.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1]
gi|257086756|ref|ZP_05581117.1| SSU ribosomal protein S1P [Enterococcus faecalis D6]
gi|257089873|ref|ZP_05584234.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188]
gi|257419284|ref|ZP_05596278.1| 30S ribosomal protein S1P [Enterococcus faecalis T11]
gi|293383007|ref|ZP_06628925.1| ribosomal protein S1 [Enterococcus faecalis R712]
gi|293389504|ref|ZP_06633961.1| ribosomal protein S1 [Enterococcus faecalis S613]
gi|294781351|ref|ZP_06746694.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1]
gi|307271030|ref|ZP_07552313.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248]
gi|307273237|ref|ZP_07554483.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855]
gi|307274974|ref|ZP_07556137.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134]
gi|307278086|ref|ZP_07559170.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860]
gi|307289093|ref|ZP_07569049.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109]
gi|307292008|ref|ZP_07571877.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411]
gi|312900748|ref|ZP_07760045.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470]
gi|312903295|ref|ZP_07762475.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635]
gi|312907522|ref|ZP_07766513.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512]
gi|312910140|ref|ZP_07768987.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516]
gi|384513231|ref|YP_005708324.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1RF]
gi|384518578|ref|YP_005705883.1| 30S ribosomal protein S1 [Enterococcus faecalis 62]
gi|397699868|ref|YP_006537656.1| 30S ribosomal protein S1-like protein [Enterococcus faecalis D32]
gi|421512400|ref|ZP_15959207.1| SSU ribosomal protein S1p [Enterococcus faecalis ATCC 29212]
gi|422686002|ref|ZP_16744215.1| putative ribosomal protein S1 [Enterococcus faecalis TX4000]
gi|422689380|ref|ZP_16747492.1| putative ribosomal protein S1 [Enterococcus faecalis TX0630]
gi|422694969|ref|ZP_16752957.1| putative ribosomal protein S1 [Enterococcus faecalis TX4244]
gi|422699236|ref|ZP_16757109.1| putative ribosomal protein S1 [Enterococcus faecalis TX1346]
gi|422704461|ref|ZP_16762271.1| putative ribosomal protein S1 [Enterococcus faecalis TX1302]
gi|422708458|ref|ZP_16765986.1| putative ribosomal protein S1 [Enterococcus faecalis TX0027]
gi|422714635|ref|ZP_16771361.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309A]
gi|422715893|ref|ZP_16772609.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309B]
gi|422718908|ref|ZP_16775559.1| putative ribosomal protein S1 [Enterococcus faecalis TX0017]
gi|422722533|ref|ZP_16779083.1| putative ribosomal protein S1 [Enterococcus faecalis TX2137]
gi|422728919|ref|ZP_16785325.1| putative ribosomal protein S1 [Enterococcus faecalis TX0012]
gi|422734325|ref|ZP_16790619.1| putative ribosomal protein S1 [Enterococcus faecalis TX1341]
gi|424676776|ref|ZP_18113647.1| putative ribosomal protein S1 [Enterococcus faecalis ERV103]
gi|424681406|ref|ZP_18118193.1| putative ribosomal protein S1 [Enterococcus faecalis ERV116]
gi|424683596|ref|ZP_18120346.1| putative ribosomal protein S1 [Enterococcus faecalis ERV129]
gi|424686500|ref|ZP_18123168.1| putative ribosomal protein S1 [Enterococcus faecalis ERV25]
gi|424690227|ref|ZP_18126762.1| putative ribosomal protein S1 [Enterococcus faecalis ERV31]
gi|424695321|ref|ZP_18131704.1| putative ribosomal protein S1 [Enterococcus faecalis ERV37]
gi|424696940|ref|ZP_18133281.1| putative ribosomal protein S1 [Enterococcus faecalis ERV41]
gi|424699674|ref|ZP_18135885.1| putative ribosomal protein S1 [Enterococcus faecalis ERV62]
gi|424703313|ref|ZP_18139447.1| putative ribosomal protein S1 [Enterococcus faecalis ERV63]
gi|424706004|ref|ZP_18142017.1| putative ribosomal protein S1 [Enterococcus faecalis ERV65]
gi|424717149|ref|ZP_18146447.1| putative ribosomal protein S1 [Enterococcus faecalis ERV68]
gi|424720728|ref|ZP_18149829.1| putative ribosomal protein S1 [Enterococcus faecalis ERV72]
gi|424724278|ref|ZP_18153227.1| putative ribosomal protein S1 [Enterococcus faecalis ERV73]
gi|424733865|ref|ZP_18162420.1| putative ribosomal protein S1 [Enterococcus faecalis ERV81]
gi|424743832|ref|ZP_18172137.1| putative ribosomal protein S1 [Enterococcus faecalis ERV85]
gi|424749531|ref|ZP_18177634.1| putative ribosomal protein S1 [Enterococcus faecalis ERV93]
gi|424761331|ref|ZP_18188913.1| putative ribosomal protein S1 [Enterococcus faecalis R508]
gi|430361007|ref|ZP_19426503.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1X]
gi|430367320|ref|ZP_19427838.1| 30S ribosomal protein S1 [Enterococcus faecalis M7]
gi|29343573|gb|AAO81335.1| ribosomal protein S1 [Enterococcus faecalis V583]
gi|227073820|gb|EEI11783.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104]
gi|227177518|gb|EEI58490.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22]
gi|229309035|gb|EEN75022.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322]
gi|255968737|gb|EET99359.1| SSU ribosomal protein S1P [Enterococcus faecalis T2]
gi|256598578|gb|EEU17754.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200]
gi|256683728|gb|EEU23423.1| SSU ribosomal protein S1P [Enterococcus faecalis T3]
gi|256711572|gb|EEU26610.1| ribosomal protein S1 [Enterococcus faecalis T8]
gi|256949464|gb|EEU66096.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5]
gi|256952435|gb|EEU69067.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96]
gi|256955633|gb|EEU72265.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704]
gi|256987029|gb|EEU74331.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1]
gi|256990592|gb|EEU77894.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol]
gi|256993225|gb|EEU80527.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1]
gi|256994786|gb|EEU82088.1| SSU ribosomal protein S1P [Enterococcus faecalis D6]
gi|256998685|gb|EEU85205.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188]
gi|257161112|gb|EEU91072.1| 30S ribosomal protein S1P [Enterococcus faecalis T11]
gi|291079672|gb|EFE17036.1| ribosomal protein S1 [Enterococcus faecalis R712]
gi|291081121|gb|EFE18084.1| ribosomal protein S1 [Enterococcus faecalis S613]
gi|294451581|gb|EFG20040.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1]
gi|295112972|emb|CBL31609.1| SSU ribosomal protein S1P [Enterococcus sp. 7L76]
gi|306497006|gb|EFM66554.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411]
gi|306499802|gb|EFM69163.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109]
gi|306505483|gb|EFM74669.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860]
gi|306508422|gb|EFM77529.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134]
gi|306510222|gb|EFM79246.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855]
gi|306512528|gb|EFM81177.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248]
gi|310626550|gb|EFQ09833.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512]
gi|310633171|gb|EFQ16454.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635]
gi|311289413|gb|EFQ67969.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516]
gi|311292229|gb|EFQ70785.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470]
gi|315027278|gb|EFT39210.1| putative ribosomal protein S1 [Enterococcus faecalis TX2137]
gi|315029397|gb|EFT41329.1| putative ribosomal protein S1 [Enterococcus faecalis TX4000]
gi|315033957|gb|EFT45889.1| putative ribosomal protein S1 [Enterococcus faecalis TX0017]
gi|315036966|gb|EFT48898.1| putative ribosomal protein S1 [Enterococcus faecalis TX0027]
gi|315147252|gb|EFT91268.1| putative ribosomal protein S1 [Enterococcus faecalis TX4244]
gi|315150549|gb|EFT94565.1| putative ribosomal protein S1 [Enterococcus faecalis TX0012]
gi|315164002|gb|EFU08019.1| putative ribosomal protein S1 [Enterococcus faecalis TX1302]
gi|315169047|gb|EFU13064.1| putative ribosomal protein S1 [Enterococcus faecalis TX1341]
gi|315172324|gb|EFU16341.1| putative ribosomal protein S1 [Enterococcus faecalis TX1346]
gi|315575879|gb|EFU88070.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309B]
gi|315577719|gb|EFU89910.1| putative ribosomal protein S1 [Enterococcus faecalis TX0630]
gi|315580531|gb|EFU92722.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309A]
gi|323480711|gb|ADX80150.1| 30S ribosomal protein S1-like protein [Enterococcus faecalis 62]
gi|327535120|gb|AEA93954.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1RF]
gi|397336507|gb|AFO44179.1| 30S ribosomal protein S1-like protein [Enterococcus faecalis D32]
gi|401674513|gb|EJS80864.1| SSU ribosomal protein S1p [Enterococcus faecalis ATCC 29212]
gi|402351113|gb|EJU86005.1| putative ribosomal protein S1 [Enterococcus faecalis ERV116]
gi|402356396|gb|EJU91130.1| putative ribosomal protein S1 [Enterococcus faecalis ERV103]
gi|402364594|gb|EJU99029.1| putative ribosomal protein S1 [Enterococcus faecalis ERV129]
gi|402364914|gb|EJU99345.1| putative ribosomal protein S1 [Enterococcus faecalis ERV31]
gi|402367354|gb|EJV01695.1| putative ribosomal protein S1 [Enterococcus faecalis ERV25]
gi|402368498|gb|EJV02811.1| putative ribosomal protein S1 [Enterococcus faecalis ERV37]
gi|402375603|gb|EJV09583.1| putative ribosomal protein S1 [Enterococcus faecalis ERV62]
gi|402377269|gb|EJV11180.1| putative ribosomal protein S1 [Enterococcus faecalis ERV41]
gi|402385318|gb|EJV18858.1| putative ribosomal protein S1 [Enterococcus faecalis ERV63]
gi|402386497|gb|EJV20003.1| putative ribosomal protein S1 [Enterococcus faecalis ERV68]
gi|402388647|gb|EJV22075.1| putative ribosomal protein S1 [Enterococcus faecalis ERV65]
gi|402390875|gb|EJV24195.1| putative ribosomal protein S1 [Enterococcus faecalis ERV81]
gi|402393199|gb|EJV26429.1| putative ribosomal protein S1 [Enterococcus faecalis ERV72]
gi|402395419|gb|EJV28525.1| putative ribosomal protein S1 [Enterococcus faecalis ERV73]
gi|402399961|gb|EJV32815.1| putative ribosomal protein S1 [Enterococcus faecalis ERV85]
gi|402402315|gb|EJV35036.1| putative ribosomal protein S1 [Enterococcus faecalis R508]
gi|402407782|gb|EJV40287.1| putative ribosomal protein S1 [Enterococcus faecalis ERV93]
gi|429512663|gb|ELA02264.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1X]
gi|429516670|gb|ELA06150.1| 30S ribosomal protein S1 [Enterococcus faecalis M7]
Length = 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + Q Q + IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEEIEQDFQAGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F+E K G+ + +I I N LILS + +L +G ++
Sbjct: 152 HFVADFSEYK---GQTLAFKIIEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG V ++ +GA I +G + GL+H+S ++ V SD L GE V+V ++ S+ P++
Sbjct: 209 EGKVARLTDFGAFIDLGGVD--GLVHVSEIAHQHVGKPSDALTVGEDVQVKIL-SINPEE 265
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 266 GRISLSIKETLPG 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V+I IN + + LS +E W + + GT+L+GTVK++ +GA + +
Sbjct: 250 VGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
GL+HIS +S + + ++L+EG++V+V V++ + P+ +I+LSI LE
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLE-VNPEEHRIALSIKALE 362
>gi|422875064|ref|ZP_16921549.1| 30S ribosomal protein S1 [Clostridium perfringens F262]
gi|380304059|gb|EIA16352.1| 30S ribosomal protein S1 [Clostridium perfringens F262]
Length = 378
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 125/263 (47%), Gaps = 39/263 (14%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGR- 142
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
L++ VG+ + V++ N+D +++S R W++ ++EG +
Sbjct: 143 -RIENLEQLVGKTLEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKALWSS--IKEGEKRK 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + M ++
Sbjct: 200 GKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257
Query: 440 ISLSIADLESEP-----GLFVSD 457
I+LS+ D+ P GL V D
Sbjct: 258 IALSLKDVIKNPWETLEGLKVGD 280
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 21/205 (10%)
Query: 257 TGTVLFAEVLGRTLSGRPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTEWN 308
G L V+ R ++ +RR+ +K W +++ E + K T
Sbjct: 151 VGKTLEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKALWSSIKE----GEKRKGKVTRLA 206
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + +++ SRV+ E+ VG + V ++ ++ D + LS ++
Sbjct: 207 KFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDMDRERIALSLKDV 265
Query: 368 ----WATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
W TL L+ G ++ G V GA + + GL+HIS ++ + SD+L
Sbjct: 266 IKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVL-PGIEGLVHISEITDENIAKPSDILE 324
Query: 423 EGERVKVLVVKSMFPD-KISLSIAD 446
G+ VKV ++ + K+SLSI D
Sbjct: 325 LGQEVKVKILNIDDENKKMSLSIKD 349
>gi|300860310|ref|ZP_07106397.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11]
gi|422733592|ref|ZP_16789894.1| putative ribosomal protein S1 [Enterococcus faecalis TX0645]
gi|422739689|ref|ZP_16794862.1| putative ribosomal protein S1 [Enterococcus faecalis TX2141]
gi|428766986|ref|YP_007153097.1| 30S ribosomal protein S1 [Enterococcus faecalis str. Symbioflor 1]
gi|300849349|gb|EFK77099.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11]
gi|315144429|gb|EFT88445.1| putative ribosomal protein S1 [Enterococcus faecalis TX2141]
gi|315160457|gb|EFU04474.1| putative ribosomal protein S1 [Enterococcus faecalis TX0645]
gi|427185159|emb|CCO72383.1| 30S ribosomal protein S1 [Enterococcus faecalis str. Symbioflor 1]
Length = 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + Q Q + IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEEIEQDFQAGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F+E K G+ + +I I N LILS + +L +G ++
Sbjct: 152 HFVADFSEYK---GQTLAFKIIEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG V ++ +GA I +G + GL+H+S ++ V SD L GE V+V ++ S+ P++
Sbjct: 209 EGKVARLTDFGAFIDLGGVD--GLVHVSEIAHQHVGKPSDALTVGEDVQVKIL-SINPEE 265
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 266 GRISLSIKETLPG 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V+I IN + + LS +E W + + GT+L+GTVK++ +GA + +
Sbjct: 250 VGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
GL+HIS +S + + ++L+EG++V+V V++ + P+ +I+LSI LE
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLE-VNPEEHRIALSIKALE 362
>gi|331090664|ref|ZP_08339513.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400078|gb|EGG79729.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 222
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 16/172 (9%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRR 345
W+ V++ + + VK GG + IEG+R F+P + L LS V N ++ + +
Sbjct: 24 WNIVKRYMEEGTTLSVKVEGIVNGGAIAYIEGIRGFIPVSRLSLSYVEN---VESYLLKE 80
Query: 346 MYVQITRINEDTNDLILSEREAWATLNLRE----------GTLLEGTVKKIYPYGAQIRI 395
+ V++ +++ N L+LS RE +E G++LEGTV+ + YGA +R+
Sbjct: 81 LEVRVIDVDQAENKLVLSAREILKEKENKEKARRLSAVEVGSVLEGTVESLQTYGAFVRL 140
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
+++ SGL+HIS +S R+ S D+L+ G+ V V V+ + KISLS+ L
Sbjct: 141 -ENDLSGLVHISQISDKRIKSPKDVLSAGDAVTVKVI-GIKDGKISLSMKAL 190
>gi|366053179|ref|ZP_09450901.1| 30S ribosomal protein S1 [Lactobacillus suebicus KCTC 3549]
Length = 404
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL + W +++ + E I T+ GGL+ G+R F+P + +
Sbjct: 89 NGSYLLSHRRLEARKVWDDIQKKFEAGETITAPVTQVVKGGLVVDA-GVRGFVPASMI-- 145
Query: 331 RVNNFTE-LKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLL 379
++F E L + G+ + +I I N LILS + EA L L G ++
Sbjct: 146 -TDHFVEDLNQFKGQTLEFKIVEIEPSENRLILSHKAIVQAEHEEAAKKLFSTLEAGQVI 204
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EGTV ++ +GA + +G + GL+H+S ++ RV SD+L G++V V V+ S+ PD+
Sbjct: 205 EGTVARMTNFGAFVDLGGVD--GLVHVSEIAYERVEKPSDVLKTGQKVSVKVL-SVDPDR 261
Query: 440 ISLSIADLESEPG 452
+S++ ++ PG
Sbjct: 262 ERISLSIKQTLPG 274
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 10/119 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIR 394
K G+++ V++ ++ D + LS ++ W + + EG++L GTVK++ +GA +
Sbjct: 245 KTGQKVSVKVLSVDPDRERISLSIKQTLPGPWDDITEKAPEGSVLTGTVKRLTSFGAFVE 304
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
+ GL+HIS +S + + +D+L G+ V+V V++ + P+ ++ LSI LE +P
Sbjct: 305 VF-PGVEGLVHISQISHKHIATPADVLTPGQEVQVKVLE-VHPEQQRLGLSIKALEEKP 361
>gi|348589944|ref|YP_004874406.1| 30S ribosomal protein S1p [Taylorella asinigenitalis MCE3]
gi|347973848|gb|AEP36383.1| SSU ribosomal protein S1p [Taylorella asinigenitalis MCE3]
gi|399116407|emb|CCG19212.1| 30s ribosomal protein S1 [Taylorella asinigenitalis 14/45]
Length = 569
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S R R AW ++ + E I T GGL G+RAFLP + + R
Sbjct: 90 GETVVSRDRAKRLAAWLKLEEALNSGELITGTITGKVKGGLTVMTNGIRAFLPGSLVDVR 149
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLE 380
V + T + G+ M ++ +++ N+++LS R + NL+EG++++
Sbjct: 150 PVKDTTPFE---GKTMEFKVIKLDRKRNNVVLSRRSVLESNMGEELQKLLENLQEGSVVK 206
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
GTVK I YGA + +G + GLLHI++M+ RV S++L G+ V+ V+K ++
Sbjct: 207 GTVKNITEYGAFVDLGGID--GLLHITDMAWRRVRHPSEVLTVGQEVEAKVLKFDKDKNR 264
Query: 440 ISLSIADLESEP 451
+SL I L +P
Sbjct: 265 VSLGIKQLGEDP 276
>gi|343084956|ref|YP_004774251.1| RNA binding S1 domain-containing protein [Cyclobacterium marinum
DSM 745]
gi|342353490|gb|AEL26020.1| RNA binding S1 domain protein [Cyclobacterium marinum DSM 745]
Length = 593
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKAKMVKAWQTIEEALEQDNVIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDIYVGKKMEVKVVKINHANDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+V+V+ F D
Sbjct: 217 IIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQVVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|384531409|ref|YP_005715497.1| 30S ribosomal protein S1 [Sinorhizobium meliloti BL225C]
gi|333813585|gb|AEG06254.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C]
Length = 568
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGTLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWQRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHNP---QPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++LN G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILNIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-NIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|428313261|ref|YP_007124238.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428254873|gb|AFZ20832.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 302
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L K W + ++++ + +V+ T N GG+ + GLR F+P++ L R
Sbjct: 96 GQVTLSRRQLEVKRLWDELAEVQEEGKSFQVRVTGVNKGGVTVDMRGLRGFIPRSHLSER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+L +G+ + I + + N L++S+R+A + + G L+EG + I P
Sbjct: 156 ----EDLDSLIGQTLTATILEADRERNKLVVSQRQATRSAGFSQLELGQLVEGKITSIKP 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + +GLLHI +S+T + S+ + G+ +K +++ ++SLS L
Sbjct: 212 FG--LFVDFEGITGLLHIKQVSQTFIESLPAVFQIGQIIKAMIIDLDEGKGRVSLSTRVL 269
Query: 448 ESEPG 452
E+ G
Sbjct: 270 ENYAG 274
>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 484
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A V+ + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 79 VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------- 365
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R
Sbjct: 139 IVDI-GLRGFLPAS--LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 366 -EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
E T L++G + EG V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVK 253
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G++V V V+ + ++ISLS+ + +P
Sbjct: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDP 283
>gi|375096179|ref|ZP_09742444.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
gi|374656912|gb|EHR51745.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
Length = 497
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K +EP+ E GGL
Sbjct: 86 VVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKDKDEPVSGTVIEVVKGGL 145
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R
Sbjct: 146 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQ 202
Query: 371 -------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 203 SEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVE 260
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 261 VGQEVTVEVLDVDMDRERVSLSLKATQEDP 290
>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
Length = 382
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+FT+ K G + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GETLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|424673233|ref|ZP_18110176.1| putative ribosomal protein S1 [Enterococcus faecalis 599]
gi|402353043|gb|EJU87879.1| putative ribosomal protein S1 [Enterococcus faecalis 599]
Length = 403
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + Q Q + IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEEIEQDFQAGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F+E K G+ + +I I N LILS + +L +G ++
Sbjct: 152 HFVADFSEYK---GQTLAFKIIEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG V ++ +GA I +G + GL+H+S ++ V SD L GE V+V ++ S+ P++
Sbjct: 209 EGKVARLTDFGAFIDLGGVD--GLVHVSEIAHQHVGKPSDALTVGEDVQVKIL-SINPEE 265
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 266 GRISLSIKETLPG 278
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 10/114 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V+I IN + + LS +E W + + GT+L+GTVK++ +GA + +
Sbjct: 250 VGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADL 447
GL+HIS +S + + ++L+EG++V+V V++ + P+ +I+LSI L
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLE-VNPEEHRIALSIKAL 361
>gi|254419951|ref|ZP_05033675.1| ribosomal protein S1 [Brevundimonas sp. BAL3]
gi|196186128|gb|EDX81104.1| ribosomal protein S1 [Brevundimonas sp. BAL3]
Length = 567
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S + R+ AW R+ + +P+ GG + G AFLP +++ R
Sbjct: 87 GEAVISRDKARREEAWTRLEVVFAEGQPVNGAIVGRVKGGFTVDLGGASAFLPGSQVDIR 146
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL------NLREGTLLE 380
V + L +G+ QI +++ ++++S R EA A L+EG + E
Sbjct: 147 PVRDVGPL---MGKEQPFQILKMDRPRGNIVVSRRAILEEARAEQRTELVGQLQEGEVRE 203
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G VK I YGA + +G + GLLH+++MS RV+ S +L G+ VKV +VK + PD
Sbjct: 204 GVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVSHPSQVLAVGDTVKVQIVK-INPDTQ 260
Query: 439 KISLSIADLESEP 451
+ISL + L+S+P
Sbjct: 261 RISLGMKQLQSDP 273
>gi|408673205|ref|YP_006872953.1| RNA binding S1 domain protein [Emticicia oligotrophica DSM 17448]
gi|387854829|gb|AFK02926.1| RNA binding S1 domain protein [Emticicia oligotrophica DSM 17448]
Length = 599
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ ++S ++ AW + + + I+ GGL+ I G+ AFLP +++
Sbjct: 100 GQLVISRKKARVLTAWSNIEKSFTEDAIIDALVKRRTKGGLIVDIYGIEAFLPGSQI--D 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLLE 380
V + VG++M V++ +IN +++++S +R+ T NL +G +LE
Sbjct: 158 VKPIRDFDIFVGKKMEVKVVKINHTNDNVVVSHKVLIEKDLETQRQVILT-NLEKGQVLE 216
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I +G I +G + GLLHI+++S R+ ++LL +R+KV+V+ +
Sbjct: 217 GVVKNITNFGVFIDLGGVD--GLLHITDISWGRINHPNELLKLDQRIKVVVLDFDEDKKR 274
Query: 440 ISLSIADLESEP 451
ISL + LES P
Sbjct: 275 ISLGMKQLESHP 286
>gi|158320593|ref|YP_001513100.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140792|gb|ABW19104.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 378
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS +R+ W + +IK+ +E K E GG++ G+R F+P ++L R
Sbjct: 84 GNVLLSKKRVDLTKGWDDLEKIKEAESLVETKVIEAVKGGVVAIARGVRCFIPASQLSDR 143
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V+N LK G+ ++ I+ N +LS + A N L +G +
Sbjct: 144 FVDN---LKSFEGKSFTTKVMEIDRKRNKAVLSRKVVLAEENKHKKVELFSKLDKGMQIS 200
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK+I +GA + IG + GL+HIS++S RV S+++ G+ VKV+V+ K
Sbjct: 201 GEVKRITDFGAFVDIGGID--GLVHISDLSWGRVKHPSEVVTIGDIVKVVVLDFDKDKGK 258
Query: 440 ISLSIADLESEP 451
+SL + + +P
Sbjct: 259 VSLGLKQTQKQP 270
>gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
Length = 516
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ EP+ E
Sbjct: 102 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEVV 160
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 161 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLS-RRAW 216
Query: 369 ATL-----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 217 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSQLSWKHIDHP 274
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ + +++SLS+ + +P
Sbjct: 275 SEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDP 309
>gi|315640571|ref|ZP_07895678.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
gi|315483678|gb|EFU74167.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
Length = 404
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 100/189 (52%), Gaps = 20/189 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + + + +E T GGL+ + G+R F+P + +
Sbjct: 94 NGSYLLSKRRLDAKKVWADIEKDFEDGKILEAPVTNIVKGGLVVDV-GVRGFVPASMVED 152
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLL 379
V++F E K G+ + ++I I N LILS +++A +++EG L
Sbjct: 153 HFVDDFEEYK---GKTLTLKIIEIEPSENRLILSHKAVVEAEKEDKKAELLASIKEGDQL 209
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-- 437
EG V ++ +GA + +G + GL+H+S +S V SD+L G+ V V V+ S+ P
Sbjct: 210 EGNVARLTNFGAFVDLGGID--GLVHVSEISHGHVGKPSDVLAVGDTVNVAVL-SIDPTT 266
Query: 438 DKISLSIAD 446
++ISLSI D
Sbjct: 267 ERISLSIKD 275
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V + I+ T + LS ++ W + + G LEGTVK++ +GA + +
Sbjct: 251 VGDTVNVAVLSIDPTTERISLSIKDTLPGPWDNIEEKAQVGATLEGTVKRLTSFGAFVEV 310
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADL 447
GL+HIS +S + + ++L+EG+ V+V V++ D +I+LSI L
Sbjct: 311 F-PGVEGLVHISQISHKHIATPHEVLHEGDTVQVKVLEVNPTDHRIALSIKAL 362
>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
Length = 488
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ EP+ E
Sbjct: 74 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 133 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLS-RRAW 188
Query: 369 ATL-----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSQLSWKHIDHP 246
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ + +++SLS+ + +P
Sbjct: 247 SEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|325954411|ref|YP_004238071.1| RNA binding S1 domain-containing protein [Weeksella virosa DSM
16922]
gi|323437029|gb|ADX67493.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922]
Length = 604
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS R+ AW V E + GG++ + G+ AFLP +++
Sbjct: 122 NGQLVLSHRKARTLNAWAAVNNAHDTQEIVNGYIKARTKGGMIVDVFGIEAFLPGSQI-- 179
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + + VG+ M ++ +IN + ++++S E++ L +G +LE
Sbjct: 180 DVKPIRDYDQYVGKTMEFKVVKINPEFKNVVVSHKALIEADIEEQKKEIVAQLEKGQVLE 239
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YG + +G + GL+HI+++S +R+ S++L +G+++ V+++ +
Sbjct: 240 GEVKNITSYGVFVDLGGVD--GLIHITDLSWSRINHPSEILEDGQKINVVILDFDEDKSR 297
Query: 440 ISLSIADLESEP 451
I L I LE P
Sbjct: 298 IQLGIKQLEPHP 309
>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
Length = 488
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VVE G + A VL + GR +LS +R + AW + ++K+ EP+ E
Sbjct: 74 PGE-VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ +G+ + +I +++ N+++LS R AW
Sbjct: 133 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLS-RRAW 188
Query: 369 ATL-----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSQLSWKHIDHP 246
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ + +++SLS+ + +P
Sbjct: 247 SEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|257416081|ref|ZP_05593075.1| SSU ribosomal protein S1P [Enterococcus faecalis ARO1/DG]
gi|257157909|gb|EEU87869.1| SSU ribosomal protein S1P [Enterococcus faecalis ARO1/DG]
Length = 403
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + Q Q + IE T GGL+ + G+R F+P + +
Sbjct: 93 NGSYLLSKRRLDAKKVWEEIEQDFQAGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F+E K G+ + +I I N LILS + +L +G ++
Sbjct: 152 HFVADFSEYK---GQTLAFKIIEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVV 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
EG V ++ +GA I +G + GL+H+S ++ V SD L GE V+V ++ S+ P++
Sbjct: 209 EGKVARLTDFGAFIDLGGVD--GLVHVSEIAHQHVGKPSDALTVGEDVQVKIL-SINPEE 265
Query: 440 ISLSIADLESEPG 452
+S++ E+ PG
Sbjct: 266 GRISLSIKETLPG 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
VG + V+I IN + + LS +E W + + GT+L+GTVK++ +GA + +
Sbjct: 250 VGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRLTSFGAFVEV 309
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLE 448
GL+HIS +S + + ++L+EG++V+V V++ + P+ +I+LSI LE
Sbjct: 310 F-PGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLE-VNPEEHRIALSIKALE 362
>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
gi|407703968|ref|YP_006827553.1| histidinol-phosphate aminotransferase 1 [Bacillus thuringiensis
MC28]
gi|423380597|ref|ZP_17357881.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
gi|423443629|ref|ZP_17420535.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
gi|423446117|ref|ZP_17422996.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
gi|423466720|ref|ZP_17443488.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
gi|423536117|ref|ZP_17512535.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
gi|423538639|ref|ZP_17515030.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
gi|423544877|ref|ZP_17521235.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
gi|423618255|ref|ZP_17594089.1| ribosomal protein S1 [Bacillus cereus VD115]
gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
gi|401133210|gb|EJQ40843.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
gi|401177223|gb|EJQ84415.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
gi|401183052|gb|EJQ90169.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
gi|401253986|gb|EJR60222.1| ribosomal protein S1 [Bacillus cereus VD115]
gi|401631349|gb|EJS49146.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
gi|402412715|gb|EJV45068.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
gi|402415430|gb|EJV47754.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
gi|402461542|gb|EJV93255.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
Length = 382
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F++ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFSDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
Length = 495
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP + L
Sbjct: 104 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDI-GLRGFLPAS--LVE 160
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 161 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 220
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 221 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 278
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 279 SLSLKATQEDP 289
>gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
gi|260664557|ref|ZP_05865409.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
gi|313471977|ref|ZP_07812469.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
gi|238832086|gb|EEQ24404.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
gi|239529091|gb|EEQ68092.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
gi|260561622|gb|EEX27594.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
Length = 402
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ ++ + + IE T GGL+ + G R FLP A
Sbjct: 82 GDKENGEFFFSVTRLKEREAFDKLEKDYEAGNAIEGTVTSSVRGGLIVNV-GTRGFLP-A 139
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLRE 375
L+S N+F ++LK +G+ + V+IT I+ + N LILS +E L
Sbjct: 140 SLIS--NHFVSDLKPYIGKTIKVKITEIDPNKNRLILSHKELIEEEREEAFETVASQLVA 197
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +GA + +G + GL+HIS +S + SD+L G+ VKV V+ +
Sbjct: 198 GDIVEGKVSRLTNFGAFVDVGGVD--GLVHISEISYKHIDKPSDVLKTGQDVKVKVI-GI 254
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 255 DDDRHRISLSIKQTEPSPF 273
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTVKKIYPYGAQIR 394
K G+ + V++ I++D + + LS ++ AT L EG ++EG VK + +GA +
Sbjct: 242 KTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFVE 301
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451
+ D + GL+H+S +S RV SD+L GE VKV V+ ++ PD+ +S++ +++P
Sbjct: 302 VADGIQ-GLVHVSEISNKRVEKPSDVLKVGETVKVKVL-NINPDEKRISLSIKQAQP 356
>gi|415885333|ref|ZP_11547261.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
gi|387591002|gb|EIJ83321.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
Length = 379
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 18/196 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R++ + AW + + + E E + + GGL+ + G+R F+P + + V
Sbjct: 80 ILSKRKIDAEKAWDDLEKKFESGEIFEAEVKDVVKGGLVVDL-GVRGFVPASLVEDHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE----------GTLLEGTV 383
+F++ K G+ + +I ++++ N LILS R +R+ G +LEGT+
Sbjct: 139 DFSDYK---GKPLTFKIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESLQPGQVLEGTI 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
++I +GA + IG + GL+HIS +S V SD++ EG++V V V+ ++ISL
Sbjct: 196 QRITDFGAFVDIGGVD--GLVHISQLSHQHVEKPSDVVEEGQKVNVKVLSVDRDNNRISL 253
Query: 443 SIADLESEPGLFVSDK 458
SI + P +S+K
Sbjct: 254 SIKETLPGPWTNISEK 269
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
LS R ++ ++ +K + Q Q+ E + T++ G I G+ + ++L
Sbjct: 164 LSHRAVVEEEKIRQKQSLLESLQPGQVLEGTIQRITDF---GAFVDIGGVDGLVHISQLS 220
Query: 330 SR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGT 382
+ V +++ E+ G+++ V++ ++ D N + LS +E W ++ + +G++LEGT
Sbjct: 221 HQHVEKPSDVVEE-GQKVNVKVLSVDRDNNRISLSIKETLPGPWTNISEKAPKGSVLEGT 279
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
VK+I YGA + + S GL+HIS +S + + ++L EG++V+V V+ + ++S
Sbjct: 280 VKRIVSYGAFVEVF-SGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLS 338
Query: 442 LSIADLE 448
LSI +L+
Sbjct: 339 LSIKELQ 345
>gi|259503206|ref|ZP_05746108.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
gi|259168863|gb|EEW53358.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
Length = 413
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 18/204 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ +++ +G LLS RRL + W +++ E I K T+ GGL+ G+
Sbjct: 79 VVISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAKVTQAVKGGLVVDA-GV 137
Query: 320 RAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-------- 370
R F+P + + V + + K G+++ +I I N LILS +E
Sbjct: 138 RGFVPASMITDHYVEDLNQFK---GQKLEFKIIEIEPSENRLILSHKEIVKAEHEQAAEK 194
Query: 371 --LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
L+ G ++EG V ++ +GA + +G + GL+H+S +S V SD+L+ G+ VK
Sbjct: 195 IFAELQAGDVVEGKVARMTNFGAFVDLGGVD--GLVHVSEISYDHVDKPSDVLSAGQDVK 252
Query: 429 VLVVKSMFPDKISLSIADLESEPG 452
V V+ S+ PD+ +S++ ++ PG
Sbjct: 253 VKVL-SVDPDRERISLSIKQTLPG 275
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ D + LS ++ W + + G+ L GTVK++ +GA + +
Sbjct: 248 GQDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAPAGSTLTGTVKRLTSFGAFVEVF 307
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
GL+HIS +S + + +D+L G+ V+V V+ ++ P+ ++ LS+ LE P
Sbjct: 308 -PGVEGLVHISQISHKHIATPADVLKPGQEVQVKVL-NVDPERQRLGLSMKALEERP 362
>gi|28211189|ref|NP_782133.1| 30S ribosomal protein S1 [Clostridium tetani E88]
gi|28203629|gb|AAO36070.1| SSU ribosomal protein S1P [Clostridium tetani E88]
Length = 387
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 19/163 (11%)
Query: 302 VKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLI 361
+K E GG++T I G+RAF+P + + S+ +L E +G+ V++ N N L+
Sbjct: 116 IKIEEIVKGGVITHINGVRAFIPASHISSKF--VQDLNEFLGKEKDVKVIEFNRKDNKLV 173
Query: 362 LSEREA------------WATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
LS +E W TL +EG + G V ++ +G + IG GL+H+S++
Sbjct: 174 LSAKEVEDEKLTKKREELWKTL--KEGEKINGKVVRLVKFGVFVDIG--GIEGLVHLSDL 229
Query: 410 SRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S RV + SD++ EG+ V+V ++ +++ L++ D++ +P
Sbjct: 230 SWKRVNNPSDIVKEGDEVEVFILNVDKKRERLGLALKDIKEDP 272
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 13/157 (8%)
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEK 341
R+ W +++ +++N + V+ ++ G+ I G+ + ++L RVNN +++ K
Sbjct: 188 REELWKTLKEGEKINGKV-VRLVKF---GVFVDIGGIEGLVHLSDLSWKRVNNPSDIV-K 242
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRI 395
G + V I +++ L L+ + + W A N + GT+ GTV K+ +GA + +
Sbjct: 243 EGDEVEVFILNVDKKRERLGLALKDIKEDPWKKALDNHKIGTVEHGTVVKLVEFGAFVEL 302
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
D GLLHIS +S R+ ++L G+++KV ++
Sbjct: 303 KDG-LEGLLHISEISEERILKPEEVLKIGDKIKVKIL 338
>gi|385813938|ref|YP_005850331.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
Length = 403
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS---- 363
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 364 ---EREAW---ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
ERE L G ++EG V ++ +G I +G + GL+HIS +S V
Sbjct: 180 VEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKAGQDVKVKVI-GIDNDRHRISLSIKQTEPSPF 273
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + IE K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + K G+ + V++ I+ D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|428300040|ref|YP_007138346.1| RNA binding S1 domain-containing protein [Calothrix sp. PCC 6303]
gi|428236584|gb|AFZ02374.1| RNA binding S1 domain protein [Calothrix sp. PCC 6303]
Length = 300
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 101/192 (52%), Gaps = 10/192 (5%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS R+L + W ++ Q+++ ++ ++ K T N GG+ + GLR F+P++ L R
Sbjct: 96 GQVTLSRRQLEIRHIWEKLIQMQEASQTVQAKVTGVNKGGVNVEVFGLRGFIPRSHLSER 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYP 388
+N LK G+ + I+ +T ++LS+R A + N L G L+EG V I
Sbjct: 156 -DNLESLK---GQTLTTSFLEIDPNTKRMVLSQRLASRSANFSMLEIGQLVEGKVTGIKA 211
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + + S LLHI +++ + ++ + G+++K +++ +I++S L
Sbjct: 212 FGVFVEL--DGVSALLHIKQVTQKYIDNLEKVFQVGQQIKAVIIDIDEGKGRIAISTRVL 269
Query: 448 ESEPGLFVSDKE 459
E+ PG + + E
Sbjct: 270 ENFPGEILENME 281
>gi|329847165|ref|ZP_08262193.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19]
gi|328842228|gb|EGF91797.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19]
Length = 562
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S + R+ AW R+ I EP+ GG ++G FLP +++ R
Sbjct: 84 GEAVISREKARREEAWTRLEAIFNRGEPVLGTIVGRVKGGFTVDMDGASGFLPGSQVDIR 143
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL------NLREGTLLE 380
V + L +G+ I +++ ++++S R EA A L EG + +
Sbjct: 144 PVRDVAPL---MGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVGQLAEGEIRD 200
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G VK I YGA + +G + GLLH+++MS RV+ S +LN G+ V+V ++K + PD
Sbjct: 201 GVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVSHPSQVLNVGDAVRVQIIK-INPDTQ 257
Query: 439 KISLSIADLESEP 451
+ISL + L+S+P
Sbjct: 258 RISLGMKQLQSDP 270
>gi|384566732|ref|ZP_10013836.1| ribosomal protein S1 [Saccharomonospora glauca K62]
gi|384522586|gb|EIE99781.1| ribosomal protein S1 [Saccharomonospora glauca K62]
Length = 491
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP + L
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDI-GLRGFLPAS--LVE 159
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 160 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 219
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 220 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 277
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 278 SLSLKATQEDP 288
>gi|15806981|ref|NP_295706.1| 30S ribosomal protein S1 [Deinococcus radiodurans R1]
gi|6459772|gb|AAF11535.1|AE002036_6 ribosomal protein S1, putative [Deinococcus radiodurans R1]
Length = 629
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 101/188 (53%), Gaps = 15/188 (7%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS +R + W + ++++ +E EV+ E GGL+ ++EG+RAFLP +++ +R N
Sbjct: 189 VLSKKRAEQDKGWRVLERMQEADEAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 248
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAW---------ATL-NLREGTLLEGTVK 384
+L VG+ + V++ +N N +I+S R AT+ L G + EG V
Sbjct: 249 --DLDPYVGKPLMVKLIELNRKRNRVIISHRAIMEAEKAKAREATVGQLEPGAVFEGEVV 306
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
+I +G + +G + GL+H S ++ R D++ G++V+V V+ ++I+LS
Sbjct: 307 EITDFGVFVNLGGID--GLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLS 364
Query: 444 IADLESEP 451
+ L +P
Sbjct: 365 MKALTQDP 372
>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|399988146|ref|YP_006568496.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|441210769|ref|ZP_20974767.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|399232708|gb|AFP40201.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|440626699|gb|ELQ88527.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
Length = 479
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|78485542|ref|YP_391467.1| 30S ribosomal protein S1 [Thiomicrospira crunogena XCL-2]
gi|78363828|gb|ABB41793.1| SSU ribosomal protein S1P [Thiomicrospira crunogena XCL-2]
Length = 557
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + R W R+ + +E + T GGL +EG+R FLP + + R
Sbjct: 81 GETRLSREKAKRAKTWDRLETALEDSETVTGLVTGKVKGGLTVDVEGVRGFLPGSLVDVR 140
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLL 379
+ +F L+ G+ + +++ +++ N++++S EREA N+ EG++L
Sbjct: 141 PIRDFGFLE---GKEVELKLVKLDRKRNNVVVSRRAVIEAENSVEREALLA-NMEEGSVL 196
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
+G VK + YGA I +G + GLLHI++M+ RV S+++ G+ ++V V+K +
Sbjct: 197 QGIVKNLTDYGAFIDLGGID--GLLHITDMAWRRVNHPSEVIQVGDEIEVKVLKFDREKN 254
Query: 439 KISLSIADLESEP 451
++SL + L+ +P
Sbjct: 255 RVSLGMKQLQEDP 267
>gi|374612566|ref|ZP_09685343.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
gi|373547477|gb|EHP74202.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
Length = 515
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 112 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 171
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 172 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 227
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 228 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 285
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 286 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 316
>gi|297205893|ref|ZP_06923288.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
gi|297149019|gb|EFH29317.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
Length = 402
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 104/199 (52%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ ++++ + IE T GGL+ + G R FLP A
Sbjct: 82 GDKENGEFFFSVTRLKEREAFDKLQKDYEAGNAIEGTVTSSVRGGLIVNV-GTRGFLP-A 139
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLRE 375
L+S N+F ++LK +G+ + V+IT I+ + N LI+S +E L
Sbjct: 140 SLIS--NHFVSDLKPYIGKSIKVKITEIDPNKNRLIISHKELIEEEREEAFETVASQLVA 197
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +GA + +G + GL+HIS +S + SD+L G+ VKV V+ +
Sbjct: 198 GDIVEGKVSRLTNFGAFVDVGGVD--GLVHISEISYKHIDKPSDVLKTGQDVKVKVI-GI 254
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 255 DDDRHRISLSIKQTEPSPF 273
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTVKKIYPYGAQIR 394
K G+ + V++ I++D + + LS ++ AT L EG ++EG VK + +GA +
Sbjct: 242 KTGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSELSEGEVVEGEVKSLTSFGAFVE 301
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451
+ D + GL+H+S +S RV SD+L GE VKV V+ S+ PD+ +S++ +++P
Sbjct: 302 VADGIQ-GLVHVSEISNKRVEKPSDVLKVGETVKVKVL-SINPDEKRISLSIKQAQP 356
>gi|403386467|ref|ZP_10928524.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Clostridium sp. JC122]
Length = 556
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G ++S + R+ + +I NE I VK E GG++ +G++ F+P + L LS
Sbjct: 282 GYIVVSKTEIEREGVQKELEEIYNNNEQINVKIVEVVKGGVIATYKGIKVFIPASHLSLS 341
Query: 331 RVNNFTELK-----------EKVGR---RMYVQITRINEDTNDLILSEREAWATLNLREG 376
RVN+ K EK GR +M + + D+ E E W NL +
Sbjct: 342 RVNDLASFKGDEVTVKLIEFEKRGRIIKKMVASRRALLQQEKDM--QEVETWN--NLEKD 397
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
T++EGTV+++ +GA + +G + GLLHIS MS +V++ D++ GE +KV V+
Sbjct: 398 TVIEGTVRRLSTFGAFVEVGGVD--GLLHISEMSWNKVSNPKDVVKIGETIKVYVL 451
>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
Length = 400
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 254 VVETGTVLFAEVLGRT----LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+V+ G + A VL R +G S RL + A+ ++++ + IE T
Sbjct: 65 LVKPGETIKALVLKRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVTSSVR 124
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---- 365
GGLL + G R FLP + + SR ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 125 GGLLVDV-GTRGFLPASLISSRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDLVE 181
Query: 366 ----EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S + SD
Sbjct: 182 EEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHIDKPSD 239
Query: 420 LLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 240 ALRVGQDVKVKVI-GIDDDRHRISLSIKQTEPSPF 273
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 13/187 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + +VG+ + V++ I++D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSSLNEGDVFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ ++ P +IS
Sbjct: 291 KSLTNFGAFVEVTDGIQ-GLVHVSEISNKHVDKPSDVLKVGQNVKVKVL-NIDPSEKRIS 348
Query: 442 LSIADLE 448
LSI E
Sbjct: 349 LSIKATE 355
>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
gi|385143485|emb|CCH24524.1| 30S ribosomal protein S1 [Corynebacterium glutamicum K051]
Length = 486
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R
Sbjct: 137 IIDI-GLRGFLPAS--LVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQ 193
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVT 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V++ + +++SLS+ + +P
Sbjct: 252 VGDEVTVEVLEVDLDRERVSLSLKATQEDP 281
>gi|423481483|ref|ZP_17458173.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
gi|401144691|gb|EJQ52218.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
Length = 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G +LEG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDILEGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|383817893|ref|ZP_09973194.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
gi|383339724|gb|EID18052.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
Length = 477
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|383824746|ref|ZP_09979918.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
gi|383336812|gb|EID15207.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
Length = 486
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVKVGDKVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|331268721|ref|YP_004395213.1| hypothetical protein CbC4_0536 [Clostridium botulinum BKT015925]
gi|329125271|gb|AEB75216.1| rpsA [Clostridium botulinum BKT015925]
Length = 387
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS ++ W + + N +EVK E GG++ I G+R F+P +++ +S
Sbjct: 89 GNVVLSKKKADIARTWRNLNNAFKNNTVLEVKVAEVVKGGVIAYINGIRGFIPASQISIS 148
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLLE 380
V + T EKV + V++ +E N ++LS +E +L+ G
Sbjct: 149 FVKDLTSFVEKV---LKVKVIEFDEKKNKVVLSGKEVELKERQNKKEKVLDSLKNGEKRT 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V+++ +GA + +G + GL+H S++S RV S+++ G++V+V V+K K
Sbjct: 206 GIVRRLAKFGAFVDLGGVD--GLIHNSDLSWKRVNDPSEVVKVGDKVEVYVLKFDKEKGK 263
Query: 440 ISLSIADLESEP 451
I+LS+ D+E +P
Sbjct: 264 IALSLKDIEEDP 275
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + ++L RVN+ +E+ KVG ++ V + + +++ + LS E
Sbjct: 215 GAFVDLGGVDGLIHNSDLSWKRVNDPSEVV-KVGDKVEVYVLKFDKEKGKIALSLKDIEE 273
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W + + ++EG V K+ +GA + I ++ GL+HI+ ++ + S++LN
Sbjct: 274 DPWNNIITKHKVNDIVEGKVVKLLDFGAFVEI-EAGVEGLVHITEITDEHIGKPSEVLNI 332
Query: 424 GERVKVLVVKSMFPD-KISLSIADLES 449
G++VKV +++ D KI+LSI + E+
Sbjct: 333 GDKVKVKILEINKEDKKIALSIKEAEN 359
>gi|381162416|ref|ZP_09871646.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
gi|418461759|ref|ZP_13032823.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
gi|359738168|gb|EHK87068.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
gi|379254321|gb|EHY88247.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
Length = 493
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP + L
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDI-GLRGFLPAS--LVE 159
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT---------LN-LREGTLLEG 381
+ +L+ VGR + +I ++++ N+++LS R LN L +G + +G
Sbjct: 160 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKG 219
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M +++
Sbjct: 220 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 277
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 278 SLSLKATQEDP 288
>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
gi|423366663|ref|ZP_17344096.1| ribosomal protein S1 [Bacillus cereus VD142]
gi|423524601|ref|ZP_17501074.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
gi|423667281|ref|ZP_17642310.1| ribosomal protein S1 [Bacillus cereus VDM034]
gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
gi|401087142|gb|EJP95351.1| ribosomal protein S1 [Bacillus cereus VD142]
gi|401170444|gb|EJQ77685.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
gi|401304032|gb|EJS09590.1| ribosomal protein S1 [Bacillus cereus VDM034]
Length = 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|404448246|ref|ZP_11013239.1| 30S ribosomal protein S1 [Indibacter alkaliphilus LW1]
gi|403765867|gb|EJZ26742.1| 30S ribosomal protein S1 [Indibacter alkaliphilus LW1]
Length = 587
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKARMVRAWQDIEDALEHDNIIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDIYVGKKMEVKVVKINHSNDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+++V+ F D
Sbjct: 217 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQIVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|357462911|ref|XP_003601737.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355490785|gb|AES71988.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 399
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 17/170 (10%)
Query: 307 WNTGGLLTRIEGLRAFLPKAELLSRVNNFTE--------LKEKVGRRMYVQITRINEDTN 358
+N GGLL R + FLP +L S V++ E +E +G + V++ ++E+
Sbjct: 124 FNAGGLLVRFYSIMGFLPYPQL-SPVHSCQEPDQTIKERARELIGAILSVKVIIVDEEKR 182
Query: 359 DLILSEREA-W--ATLNLREGTLLEGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSR 411
L+LSE+EA W + ++ G L EG V + YGA + + G + +GL+HIS +S
Sbjct: 183 KLVLSEKEASWFKHSKHINIGDLFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSW 242
Query: 412 TRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKEV 460
V V D L EGE V+V V+ +++LSI LE +P L DK +
Sbjct: 243 DLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDPLLETLDKVI 292
>gi|423676686|ref|ZP_17651625.1| ribosomal protein S1 [Bacillus cereus VDM062]
gi|401307807|gb|EJS13232.1| ribosomal protein S1 [Bacillus cereus VDM062]
Length = 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|406925750|gb|EKD62158.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 368
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 131/307 (42%), Gaps = 68/307 (22%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVR 230
+PGD V G+VVS + +++ ++VGA G + ++ DA+E
Sbjct: 29 RPGDLVEGIVVSVSHSEVLLDVGAKSEGVVSGSDL----------------SDADESFKH 72
Query: 231 GKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVL-GRTLSGRPLLSTRRLFRKMAWHR 289
++ G +FA+V+ G +LS R+ + W
Sbjct: 73 ------------------------LKVGDTIFAKVVQAENQQGYIVLSLRKAEKDKKWKG 108
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP-----KAELLSRVNNF-----TELK 339
+E E+N GGLLT GLR F+P ++ + + F ELK
Sbjct: 109 AEDALATGSVLEATIIEYNKGGLLTDCLGLRGFIPLSHLDRSHFANDIAKFAAGSEAELK 168
Query: 340 EKV----GRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLEGTVKK 385
E + G+ + V++ ++ N +LSE++A +T + + GT LEG V
Sbjct: 169 ESLKALAGKVIKVKVIELDPLKNRFVLSEKDALSTYSDESREKRLQEIAAGTTLEGIVTG 228
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
I P+G I + GL+HIS ++ +V + S + G+ VKV+V+ K++LS+
Sbjct: 229 IMPFGVFIDL--DGVEGLVHISEIAWEKVNNPSSYFSVGQTVKVMVLGVDDQSKKLALSV 286
Query: 445 ADLESEP 451
L P
Sbjct: 287 KRLTPNP 293
>gi|423454947|ref|ZP_17431800.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
gi|423472523|ref|ZP_17449266.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
gi|401135226|gb|EJQ42829.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
gi|402428055|gb|EJV60153.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
Length = 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|110802114|ref|YP_699426.1| 30S ribosomal protein S1 [Clostridium perfringens SM101]
gi|110682615|gb|ABG85985.1| ribosomal protein, S1 family [Clostridium perfringens SM101]
Length = 378
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 125/263 (47%), Gaps = 39/263 (14%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEKEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGR- 142
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
L+E VG+ + V++ N++ +++S R W++ ++EG +
Sbjct: 143 -RIENLEELVGKTLEVRVIEFNKENRKVVVSRRIIDEEIRNNEKKALWSS--IKEGEKRK 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + M ++
Sbjct: 200 GKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257
Query: 440 ISLSIADLESEP-----GLFVSD 457
I+LS+ D+ P GL V D
Sbjct: 258 IALSLKDVIKNPWETLEGLKVGD 280
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 264 EVLGRTLS---------GRPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTE 306
E++G+TL R ++ +RR+ +K W +++ E + K T
Sbjct: 149 ELVGKTLEVRVIEFNKENRKVVVSRRIIDEEIRNNEKKALWSSIKE----GEKRKGKVTR 204
Query: 307 WNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365
G I G+ + +++ SRV+ E+ VG + V ++ ++ D + LS +
Sbjct: 205 LAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDMDRERIALSLK 263
Query: 366 EA----WATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
+ W TL L+ G ++ G V GA + + GL+HIS ++ + SD+
Sbjct: 264 DVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVL-PGIEGLVHISEITDENIAKPSDI 322
Query: 421 LNEGERVKVLVVKSMFPD-KISLSIAD 446
L G+ VKV ++ + K+SLSI D
Sbjct: 323 LELGQEVKVKILNIDDENKKMSLSIKD 349
>gi|451823134|ref|YP_007459408.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775934|gb|AGF46975.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 570
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 17/207 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS R R AW ++ Q + E I T GGL G+RAFLP + + L
Sbjct: 89 GDTILSRDRAKRLSAWLKLEQALESGELITGTITGKVKGGLTVMTNGIRAFLPGSLVDLR 148
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATL---------NLREGTLLE 380
V + T + G+ M ++ +++ N+++LS R+ A++ NL EG +++
Sbjct: 149 PVKDTTPYE---GKTMEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLDNLYEGAVVK 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA I +G + GLLHI++M+ RV S++L + ++ V+K ++
Sbjct: 206 GVVKNITDYGAFIDLGGVD--GLLHITDMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNR 263
Query: 440 ISLSIADLESEPGLFVSDKEVHIIFLF 466
+SL + L +P + ++ + H LF
Sbjct: 264 VSLGVKQLGEDPWVDLARRYPHGTRLF 290
>gi|404421594|ref|ZP_11003308.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403658822|gb|EJZ13520.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 479
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|212638920|ref|YP_002315440.1| 30S ribosomal protein S1 [Anoxybacillus flavithermus WK1]
gi|212560400|gb|ACJ33455.1| Ribosomal protein S1 [Anoxybacillus flavithermus WK1]
Length = 386
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS + + AW + + + +V + GGL+ + G+RAF+P A L+ + V
Sbjct: 87 ILSKKAADAEKAWEELERKLANGDTFDVVVKDIVKGGLVADV-GVRAFIP-ASLVEKDFV 144
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+FT+ K GR + V++ ++ + N ++LS R + A +L+ G +LEGT
Sbjct: 145 EDFTDYK---GRTLTVKVVELDREKNRVVLSHRAVVEEEEASKKKAALQSLQVGQVLEGT 201
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
V ++ +GA + IG+ + GL+HIS +S RV SD++ EG+ VKV V+
Sbjct: 202 VVRMTNFGAFVNIGEVD--GLVHISQLSHARVDHPSDVVKEGDVVKVKVL 249
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 99/186 (53%), Gaps = 11/186 (5%)
Query: 269 TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328
LS R ++ +K A + Q+ Q+ E V+ T + + ++GL +
Sbjct: 170 VLSHRAVVEEEEASKKKAALQSLQVGQVLEGTVVRMTNFGAFVNIGEVDGLVHISQLSH- 228
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGT 382
+RV++ +++ K G + V++ I+E++ + LS + A W + ++EG +LEGT
Sbjct: 229 -ARVDHPSDVV-KEGDVVKVKVLAIDEESGRVSLSMKAALPAPWDGIEQKIKEGDVLEGT 286
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-IS 441
VK++ P+GA + + GL+HIS +S + + ++L EG+ VKV V+ +K +S
Sbjct: 287 VKRLAPFGAFVEVF-PGVEGLVHISQISTKHIGAPHEVLKEGDVVKVKVLAVNEQEKRLS 345
Query: 442 LSIADL 447
LSI +L
Sbjct: 346 LSIREL 351
>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51866]
Length = 482
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR LLS +R + AW + ++K+ +EP+ E GGL+ I GLR FLP + L
Sbjct: 96 GRLLLSKKRAQYERAWGTIEELKEKDEPVTGTVIEVVKGGLILDI-GLRGFLPAS--LVE 152
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 153 MRRVRDLEPYIGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLHQLQKGQVRK 211
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S++++ G+ V V V+ + ++
Sbjct: 212 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRER 269
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 270 VSLSLKATQEDP 281
>gi|226355432|ref|YP_002785172.1| 30S ribosomal protein S1 [Deinococcus deserti VCD115]
gi|226317422|gb|ACO45418.1| putative ribosomal protein S1 [Deinococcus deserti VCD115]
Length = 576
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 15/188 (7%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS +R + W + ++++ +E EV E GGL+ ++EG+RAFLP +++ +R N
Sbjct: 128 VLSKKRADQDKGWRVLEKMQEADEAFEVDVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 187
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSER---EAW------ATL-NLREGTLLEGTVK 384
+L VG+ + V++ +N N +I+S R EA AT+ L G EG V
Sbjct: 188 --DLDPYVGKPLQVKLIELNRKRNRVIISHRAIMEAQKAKAREATVGQLEAGAQFEGEVV 245
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
+I +G + +G + GL+H S ++ R D++ GE+V+V V+ ++I+LS
Sbjct: 246 EITDFGVFVNLGGID--GLVHRSELTYGRFNHPRDVVKVGEKVQVQVLDVDDGRERINLS 303
Query: 444 IADLESEP 451
+ L +P
Sbjct: 304 MKALTQDP 311
>gi|423555636|ref|ZP_17531939.1| ribosomal protein S1 [Bacillus cereus MC67]
gi|401197040|gb|EJR03978.1| ribosomal protein S1 [Bacillus cereus MC67]
Length = 382
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|433647758|ref|YP_007292760.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
gi|433297535|gb|AGB23355.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
Length = 481
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|418245351|ref|ZP_12871758.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
gi|354510759|gb|EHE83681.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
Length = 486
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R
Sbjct: 137 IIDI-GLRGFLPAS--LVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQ 193
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVT 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 252 VGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
Length = 402
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + +E T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGL+ + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLIVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +GA I +G + GL+HIS +S V
Sbjct: 180 VEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKVGQDVKVKVI-GIDNDRHRISLSIKQTEPSPF 273
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISL 349
Query: 443 SIADLES 449
SI +S
Sbjct: 350 SIKAADS 356
>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 486
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R
Sbjct: 137 IIDI-GLRGFLPAS--LVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQ 193
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVT 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 252 VGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 342 VGRRMYVQITRINEDTNDLILS----EREAWATL--NLREGTLLEGTVKKIYPYGAQIRI 395
VG + V++ ++ D + LS + + W N G ++ G V K+ P+GA +R+
Sbjct: 252 VGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVRV 311
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ GL+HIS +++ V ++ GE V V V+ + +ISLS+
Sbjct: 312 -EEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360
>gi|302389719|ref|YP_003825540.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
oceani DSM 16646]
gi|302200347|gb|ADL07917.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
oceani DSM 16646]
Length = 672
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 16/210 (7%)
Query: 254 VVETGTVLFAEVLG-RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
+V+TG + ++L G +LS +R AW + + + + +E + E GGL
Sbjct: 341 IVKTGDRIKVQILKLEDNEGNLILSKKRADVIEAWRYLEEAFEKKQTVEGRVIESIKGGL 400
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------- 365
L ++G+R F+P + + + +L VG+ + +++ ++ D ++LS +
Sbjct: 401 LVNVKGVRGFIPASH--ADLKYVADLSVYVGKDLKLKVIELDRDKKRVVLSHKLFLQEEK 458
Query: 366 ---EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
+ ++EG ++ GTV+K+ +GA + IG + GL+HIS++S RV S++L+
Sbjct: 459 EKLKEEIWEKVKEGQVIRGTVRKLTDFGAFVDIGGYD--GLIHISDLSWQRVNHPSEVLS 516
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
E + V V V+K +ISL + L +P
Sbjct: 517 ENQEVDVKVLKVDKERGRISLGLKQLTPDP 546
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G +++G V K+ +GA + + + GL+H+S +S+ RV + D+L EGE +KV ++ +
Sbjct: 557 GQVVQGKVVKLTNFGAFVEL-EPGVEGLVHVSQISKKRVATPKDVLKEGETIKVKIL-DI 614
Query: 436 FPD--KISLSI 444
P+ +ISLSI
Sbjct: 615 KPEEKRISLSI 625
>gi|451944076|ref|YP_007464712.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451903463|gb|AGF72350.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 486
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + Q++ +EP+ E GGL
Sbjct: 77 VVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGNIEQLQANDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQELEAKIIELDKHRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 251 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium
HF0200_09I09]
Length = 677
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
VL + T G+ LLS R + W ++ + E E + T +N GGLL +EG+
Sbjct: 154 VLVYVMQAETDEGQVLLSIDRARGEQGWRILQDRFENGEIFEAEITGFNKGGLLANVEGV 213
Query: 320 RAFLPKAELLSR---VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA---WATLN- 372
AF+P ++++ + L ++VGR + +++ IN N ILSER A W
Sbjct: 214 NAFIPMSQVVGAKPGTDGAQSLSDQVGRELRMKVIEINRRRNRAILSERAAMQEWRAEQK 273
Query: 373 ------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
L EG + +GTV I +G + +G ++ GL H+S +S R L G+
Sbjct: 274 ERLLGELAEGEVRKGTVTSIRNFGVFVDLGGAD--GLAHLSELSWDRNADPEQLFQVGQD 331
Query: 427 VKVLVVK-SMFPDKISLSI 444
+ V +++ KI+LS+
Sbjct: 332 IDVYIMRIDRDSKKIALSV 350
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIR 394
+VG+ + V I RI+ D+ + LS R A W L G ++ G V K+ +GA R
Sbjct: 327 QVGQDIDVYIMRIDRDSKKIALSVRRAAPEQWQDLISQYEVGDVVPGIVTKVVAFGAFTR 386
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433
+ GL H+S + R+ S ++L EG+ V + +V+
Sbjct: 387 L-PGPVEGLAHVSELVDRRINSPEEILIEGDVVPLKIVR 424
>gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
gi|335996765|ref|ZP_08562682.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
gi|417974259|ref|ZP_12615080.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
gi|335351835|gb|EGM53326.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
gi|346329256|gb|EGX97554.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
Length = 395
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 20/194 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
G LLS RRL + W + + + E I+ T+ GGL+ G+R F+P A ++S
Sbjct: 85 GGSFLLSQRRLAARKVWDDIEKKFEAGETIKAPVTQVVKGGLVVDA-GVRGFIP-ASMVS 142
Query: 331 RVNNFTE-LKEKVGRRMYVQITRINEDTNDLILS-------EREA--WATLN-LREGTLL 379
++F E L + G+ + ++I + N LILS EREA A L+ L G ++
Sbjct: 143 --DHFVEDLNQYKGQELELKIVELEPSENRLILSHKEIVQQEREANKKAVLDKLVVGDVV 200
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-- 437
EG V ++ +GA I +G + GL+H+S +S RV SD+L G+ VKV V+ ++ P
Sbjct: 201 EGKVARLTNFGAFIDLGGVD--GLVHVSEISFERVGKPSDVLKVGQDVKVKVL-AVDPEK 257
Query: 438 DKISLSIADLESEP 451
D+ISLSI +P
Sbjct: 258 DRISLSIKQTLPQP 271
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIR 394
KVG+ + V++ ++ + + + LS ++ W T + EG +LEGTVK++ +GA +
Sbjct: 241 KVGQDVKVKVLAVDPEKDRISLSIKQTLPQPWDNITEKVAEGDVLEGTVKRLTSFGAFVE 300
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+ GL+HIS +S + + +++L GE+VKV V+ + +++LSI L+ +P
Sbjct: 301 VF-PGVEGLVHISQISHKHIATPNEVLASGEKVKVKVLNVNAEEHRLALSIKALQEKP 357
>gi|406947536|gb|EKD78447.1| RNA binding S1 protein [uncultured bacterium]
Length = 388
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 30/204 (14%)
Query: 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP------------ 324
S R+ K AW ++ ++ NE ++ + + N GGL+ R+ + FLP
Sbjct: 92 SFRQAGHKKAWEKLEHLQGANEIVDAQIMDANKGGLIVRVGHVSGFLPVSQLSVEHYPRV 151
Query: 325 ----KAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA------TLNLR 374
KA++L R+ + V + V++ ++E LI+SE+ A A +
Sbjct: 152 EGGNKAKILERLQTY------VTQHFRVKVIDVDEVDEKLIVSEKMAKAEQQQEKIAQYK 205
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434
G + G V + +GA + GD N GL+HIS ++ R+ + L G+ VK ++ +
Sbjct: 206 VGDSIAGKVTGVVDFGAFVEFGD-NLEGLVHISEIAWQRIDDPKEYLKVGDDVKAQII-A 263
Query: 435 MFPDKISLSIADLESEPGLFVSDK 458
+ KISLSI +L ++P L V+ +
Sbjct: 264 IDNGKISLSIRNLIADPWLEVAAR 287
>gi|373856650|ref|ZP_09599394.1| RNA binding S1 domain protein [Bacillus sp. 1NLA3E]
gi|372453629|gb|EHP27096.1| RNA binding S1 domain protein [Bacillus sp. 1NLA3E]
Length = 379
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 20/197 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R++ + AW + E E + + GGL+ + G+R F+P A L+ V
Sbjct: 80 ILSKRKVDAEKAWDDLEAKFNSGEVFEAEIKDVVKGGLVVDL-GVRGFVP-ASLVEAFFV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F++ K G+ + +I ++++ N LILS R + +L G ++EGT
Sbjct: 138 EDFSDYK---GQSLAFKIVELDKEKNRLILSHRIVVEEQKGKQKQNLIDSLEAGQVIEGT 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V++I +GA + IG + GL+HIS +S V SD++ EG+ V+V V+ D+IS
Sbjct: 195 VQRITDFGAFVDIGGVD--GLVHISQLSHQHVDKPSDVVQEGQSVQVKVLSVDRDNDRIS 252
Query: 442 LSIADLESEPGLFVSDK 458
LSI D P +++K
Sbjct: 253 LSIKDTLPGPWTNIAEK 269
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ D + + LS ++ W + + +G+ L G VK+I YGA + +
Sbjct: 234 GQSVQVKVLSVDRDNDRISLSIKDTLPGPWTNIAEKAPKGSTLTGVVKRIVSYGAFVEVF 293
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADL 447
GL+HIS +S + + ++L EG+ V+V V++ D ++S+SI +L
Sbjct: 294 -PGVEGLVHISQISHKHIATPHEVLKEGQEVQVKVLEVSEQDQRLSISIKEL 344
>gi|417972279|ref|ZP_12613190.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
gi|344043437|gb|EGV39130.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
Length = 486
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R
Sbjct: 137 IIDI-GLRGFLPAS--LVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQ 193
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVT 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 252 VGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
Length = 479
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 TVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
Length = 485
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 78 VVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEVVKGGL 137
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R AW
Sbjct: 138 ILDI-GLRGFLPAS--LVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVLS-RRAWLEQT 193
Query: 373 -----------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L +G + GTV I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 QSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 251
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V++ M +++SLS+ + +P
Sbjct: 252 EVGQEVTVEVLEVDMDRERVSLSLKATQEDP 282
>gi|225568606|ref|ZP_03777631.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
15053]
gi|225162534|gb|EEG75153.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
15053]
Length = 228
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+ V+ + + VK GG + +EGLR F+P ++L ++ +L+ + + +
Sbjct: 30 WNVVKNYMEKGTVLPVKIEGIVNGGAIAMVEGLRGFIPASKL--SLSYIEDLETYLLKDI 87
Query: 347 YVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIG 396
VQ+ +++ N L+LS RE +++ G++++GTV+ + YGA +R+
Sbjct: 88 EVQVIDVDQANNRLVLSAREILKEKERKEKEAKIASVKIGSVVKGTVESLQNYGAFVRLE 147
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
D SGL+H+S +S+ RV + D+LN G+ V V ++ + KISLS+ L
Sbjct: 148 DG-LSGLVHVSQISQKRVKAPKDVLNTGDEVTVKII-GLKDGKISLSMKAL 196
>gi|110799693|ref|YP_696828.1| 30S ribosomal protein S1 [Clostridium perfringens ATCC 13124]
gi|168208852|ref|ZP_02634477.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC
3626]
gi|168215777|ref|ZP_02641402.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239]
gi|110674340|gb|ABG83327.1| ribosomal protein S1 family [Clostridium perfringens ATCC 13124]
gi|170713092|gb|EDT25274.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC
3626]
gi|182382017|gb|EDT79496.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239]
Length = 378
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 125/263 (47%), Gaps = 39/263 (14%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGR- 142
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
L+E VG+ + V++ N++ +++S R W++ ++EG +
Sbjct: 143 -RIENLEELVGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSS--IKEGEKRK 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + M ++
Sbjct: 200 GKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257
Query: 440 ISLSIADLESEP-----GLFVSD 457
I+LS+ D+ P GL V D
Sbjct: 258 IALSLKDVIKNPWETLEGLKVGD 280
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 264 EVLGRTLS---------GRPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTE 306
E++G+TL R ++ +RR+ +K W +++ E + K T
Sbjct: 149 ELVGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKE----GEKRKGKVTR 204
Query: 307 WNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365
G I G+ + +++ SRV+ E+ VG + V ++ ++ D + LS +
Sbjct: 205 LAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDMDRERIALSLK 263
Query: 366 EA----WATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
+ W TL L+ G ++ G V GA + + GL+HIS ++ + SD+
Sbjct: 264 DVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVL-PGIEGLVHISEITDENIAKPSDI 322
Query: 421 LNEGERVKVLVVKSMFPD-KISLSIAD 446
L G+ VKV ++ + K+SLSI D
Sbjct: 323 LELGQEVKVKILNIDDENKKMSLSIKD 349
>gi|338737387|ref|YP_004674349.1| 30S ribosomal protein S1 [Hyphomicrobium sp. MC1]
gi|337757950|emb|CCB63773.1| 30S ribosomal protein S1 [Hyphomicrobium sp. MC1]
Length = 573
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 200 MLTKEVLPLYDKEMDFLLCDLKKDA--EEFMVRGKM-GIVKD----DDAIAMSG------ 246
+ TKE+ P + L L KD E +V+GK+ GI KD D + M G
Sbjct: 5 LATKELNPSREDFAALLAESLAKDDLFEGSVVKGKIVGIEKDMAIIDVGLKMEGRVALKE 64
Query: 247 ---GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVK 303
G PG V ++ E + L G +LS + R+ +W R+ ++ + E +
Sbjct: 65 FGVGGKPGDLKVGDTVEVYLERVENAL-GEAVLSRDKARREESWTRLERLYEKGEKVTGV 123
Query: 304 FTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLIL 362
GG ++G AFLP +++ R V + L + + QI +++ ++++
Sbjct: 124 IFNKVKGGFTVDLDGAVAFLPGSQVDIRPVRDIGPLMHQ---QQPFQILKMDRRRGNIVV 180
Query: 363 SER----EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT 412
S R E+ A L EG +++G VK I YGA I +G + GLLH+++M+
Sbjct: 181 SRRSVLEESRAEQRTEIVARLAEGQIIDGLVKNITDYGAFIDLGGID--GLLHVTDMAWR 238
Query: 413 RVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
RV S++LN G+ VKV +++ + P+ +ISL + L+S+P
Sbjct: 239 RVNHPSEILNVGDTVKVQIIR-INPETQRISLGMKQLQSDP 278
>gi|168205615|ref|ZP_02631620.1| ribosomal protein S1 family [Clostridium perfringens E str.
JGS1987]
gi|170662936|gb|EDT15619.1| ribosomal protein S1 family [Clostridium perfringens E str.
JGS1987]
Length = 378
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 41/264 (15%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS-R 331
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRR 143
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLL 379
+ N EL EK + V++ N+D +++S R W++ ++EG
Sbjct: 144 IENLEELVEKT---LEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKALWSS--IKEGEKR 198
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
+G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + M +
Sbjct: 199 KGKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRE 256
Query: 439 KISLSIADLESEP-----GLFVSD 457
+I+LS+ D+ P GL V D
Sbjct: 257 RIALSLKDVIKNPWETLEGLKVGD 280
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 273 RPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLP 324
R ++ +RR+ +K W +++ E + K T G I G+ +
Sbjct: 167 RKVVVSRRVIDEEIRNNEKKALWSSIKE----GEKRKGKVTRLAKFGAFVDIGGVEGLVH 222
Query: 325 KAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL-NLREGTL 378
+++ SRV+ E+ VG + V ++ ++ D + LS ++ W TL L+ G +
Sbjct: 223 LSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLEGLKVGDV 281
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+ G V GA + + GL+HIS ++ + SD+L G+ VKV ++ +
Sbjct: 282 VSGKVTNFIKVGAFVEVL-PGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDDEN 340
Query: 439 -KISLSIAD 446
K+SLSI D
Sbjct: 341 KKMSLSIKD 349
>gi|331085544|ref|ZP_08334628.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407431|gb|EGG86933.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 222
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
WH V + + + VK GG + IEGLR F+P ++L ++ +L+ + + +
Sbjct: 24 WHIVSKYMEQQTDLPVKIEGIVNGGAIAYIEGLRGFIPASKL--SLSYIEDLETYLLKEI 81
Query: 347 YVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V++ I+ N L+LS RE A + G++L GTV + YGA I +
Sbjct: 82 KVRVIDIDPAENRLVLSAREILKEEQAAERAKKVQEIPVGSILSGTVDSLQSYGAFILL- 140
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
++ SGL+H+S + R+ S +D+L GE V+V V+ + KISLS+ L
Sbjct: 141 ENGLSGLVHVSQICEKRIKSPADVLKTGEEVQVKVI-GIKDGKISLSMKAL 190
>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 489
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 145/309 (46%), Gaps = 57/309 (18%)
Query: 155 DDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMD 214
+D + E +++Y+ GD V G VV + +++ +++G G +L++E+
Sbjct: 22 EDLIKEIDKTIKYF--NDGDLVSGTVVKVDRDEVLLDIGYKTEGVILSREL--------- 70
Query: 215 FLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGR 273
+ D+ DAE V+ G + A VL + GR
Sbjct: 71 SIKHDVDPDAE-----------------------------VKVGDEIEALVLQKEDKEGR 101
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
LLS +R + AW + ++KQ + + E GGL+ I GLR FLP + L +
Sbjct: 102 LLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDI-GLRGFLPAS--LVEMR 158
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTV 383
+L+ +GR++ +I ++++ N+++LS R E T L++G + +G V
Sbjct: 159 RVRDLQPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVRKGVV 218
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DKISL 442
I +GA + +G + GL+H+S +S + S+++ G+ V V V+ F +++SL
Sbjct: 219 SSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSL 276
Query: 443 SIADLESEP 451
S+ + +P
Sbjct: 277 SLKATQEDP 285
>gi|365924923|ref|ZP_09447686.1| 30S ribosomal protein S1 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266394|ref|ZP_14768866.1| 30S ribosomal protein S1 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425504|gb|EJE98463.1| 30S ribosomal protein S1 [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 402
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 22/213 (10%)
Query: 255 VETGTVLFAEVLGRTLS----GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG 310
V G V+ V+ R S G LLS RRL + W + + + E I T+ G
Sbjct: 69 VTIGDVIDLVVISRIGSDKEGGSYLLSQRRLEARKIWDDIEKKFEAGETITAPVTQVVKG 128
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTE-LKEKVGRRMYVQITRINEDTNDLILSERE--- 366
GL+ G+R F+P + + R F E L + + + ++I I N LILS +E
Sbjct: 129 GLVVDA-GVRGFIPASMVDDR---FVEDLNQYKNQELELKIIEIEPSENRLILSHKEIVK 184
Query: 367 -------AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
A NL G ++EG V ++ +GA + +G + GL+H+S +S RV SD
Sbjct: 185 AAREAKKAETLANLVVGDVVEGKVARLTSFGAFVDLGGVD--GLVHVSEISYERVNKPSD 242
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+L GE VKV V+ D+ISLSI +P
Sbjct: 243 VLKVGETVKVKVLSIDTERDRISLSIKQTLPQP 275
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 300 IEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTN 358
+E K + G + G+ + +E+ RVN +++ KVG + V++ I+ + +
Sbjct: 204 VEGKVARLTSFGAFVDLGGVDGLVHVSEISYERVNKPSDVL-KVGETVKVKVLSIDTERD 262
Query: 359 DLILSEREA----W--ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT 412
+ LS ++ W T + EG +LEGTVK++ +GA + + GL+HIS +S
Sbjct: 263 RISLSIKQTLPQPWDNITEKVAEGDVLEGTVKRLTSFGAFVEVF-PGVEGLVHISQISHK 321
Query: 413 RVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEP 451
+ + +++L GE +KV V+ + +++LS+ LE +P
Sbjct: 322 HIATPNEVLTSGETIKVKVLNVHADEHRLALSVKALEEKP 361
>gi|433462997|ref|ZP_20420565.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
gi|432188134|gb|ELK45352.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
Length = 380
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + AW + + E E + + GGL+ I GLR F+P A L+ V
Sbjct: 80 VLSKRAVDADKAWQDLEAKFESGEIFEAEVKDVVKGGLVVDI-GLRGFIP-ASLVETYYV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F + K GR + +++ ++ + N +ILS R + +L EG ++EGT
Sbjct: 138 EDFEDYK---GRTLSLKVVELDREQNRVILSHRAVVEEEESVKKQEVLQSLEEGQVIEGT 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+HIS +S V SD++ EG+ VKV V+ S+ D +
Sbjct: 195 VQRLTDFGAFVNLGGID--GLVHISQLSHQHVEKASDVVEEGQAVKVKVL-SVDRDNERI 251
Query: 443 SIADLESEPG 452
S++ ++PG
Sbjct: 252 SLSLKATQPG 261
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 262 FAEVLGRTLSGRPLLSTRRLFRKMAWHR-------------VRQIKQLNEPIEVKFTEWN 308
F + GRTLS + + R R + HR V Q + + IE
Sbjct: 140 FEDYKGRTLSLKVVELDREQNRVILSHRAVVEEEESVKKQEVLQSLEEGQVIEGTVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G + G+ + ++L + V +++ E+ G+ + V++ ++ D + LS +
Sbjct: 200 DFGAFVNLGGIDGLVHISQLSHQHVEKASDVVEE-GQAVKVKVLSVDRDNERISLSLKAT 258
Query: 368 ----WATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W + + G +LEGTV+++ +GA + + GL+HIS +S + + ++L
Sbjct: 259 QPGPWHDIQSKVSSGDVLEGTVRRLVSFGAFVEVF-PGVEGLVHISQISNRHIGTPDEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLE 448
+EG++V+V V+ ++SLS+ +LE
Sbjct: 318 DEGQQVEVKVLDVDENAKRLSLSMKELE 345
>gi|326803716|ref|YP_004321534.1| putative 30S ribosomal protein S1 [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650493|gb|AEA00676.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a]
Length = 440
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL +K W + + + E I V T+ GGL+ G+R F+P + +
Sbjct: 100 NGTFLLSRRRLEQKKVWKELEEKAENEETITVPVTKVVKGGLVVDA-GVRGFIPASMVED 158
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----------AWATLNLREGTLL 379
V +FT K G+ + V+I IN N LILS +E A EG ++
Sbjct: 159 HFVRDFTPYK---GKELEVKIVEINPQENRLILSHKEIAREQAEAERAEKLAQFEEGEVV 215
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
EGTV ++ +GA + +G + GL+HIS ++ V SD L G+ VKV ++ D
Sbjct: 216 EGTVARLANFGAFVDLGGID--GLVHISQIAHHHVNHPSDELEVGQTVKVKILSIDEDRD 273
Query: 439 KISLS 443
+ISLS
Sbjct: 274 RISLS 278
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 13/198 (6%)
Query: 273 RPLLSTRRLFRKMA-WHRVRQIKQLNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + + R+ A R ++ Q E +E G + G+ + +++
Sbjct: 185 RLILSHKEIAREQAEAERAEKLAQFEEGEVVEGTVARLANFGAFVDLGGIDGLVHISQIA 244
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTV 383
N + +VG+ + V+I I+ED + + LS + A W + + +G L+G V
Sbjct: 245 HHHVNHPSDELEVGQTVKVKILSIDEDRDRISLSTKAATPSPWEDIEEKAPKGAELDGVV 304
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
++I +GA + + GL+HIS +S V SD L EG+ +KV V+ + P+ ++S
Sbjct: 305 RRIVDFGAFVEVF-PGVEGLVHISQISHEHVNHPSDKLEEGQDIKVKVL-DVNPEEHRLS 362
Query: 442 LSIADLESEPGLFVSDKE 459
LSI LE P SDK+
Sbjct: 363 LSIKALEEAPERSESDKD 380
>gi|154497962|ref|ZP_02036340.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
29799]
gi|150272952|gb|EDN00109.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 649
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 21/194 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G LS +RL +W + Q ++ + +E TE N GG++ I+G+R F+P ++ L
Sbjct: 366 GVVTLSKKRLDTVKSWDDIEQAREDHTTVEGVVTEENKGGIVVSIKGVRVFVPASQTGLP 425
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE------------AWATLNLREGTL 378
R +EL +K + ++IT +N ++ S R W N+ EG
Sbjct: 426 RETPMSELLKK---HVRLRITEVNRARRRVVGSIRAVTAEERAAKAAEVWE--NIEEGKK 480
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
GTVK + YGA + IG + G++HIS +S +R+ S+++ G+ V+V V+
Sbjct: 481 YTGTVKSLTSYGAFVDIGGVD--GMVHISELSWSRIKHPSEVVKVGDTVEVYVISFDKEK 538
Query: 438 DKISLSIADLESEP 451
KISL + D +P
Sbjct: 539 KKISLGMKDRSQDP 552
>gi|374287382|ref|YP_005034467.1| 30s ribosomal protein S1 [Bacteriovorax marinus SJ]
gi|301165923|emb|CBW25496.1| 30s ribosomal protein S1 [Bacteriovorax marinus SJ]
Length = 592
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS + AW ++ + + P+E GGL I G++AFLP +++ R
Sbjct: 118 GNLVLSKDKAEILKAWDKISEACEKGTPLEGTVIAKVKGGLSVDI-GVKAFLPGSQIDLR 176
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN-------------LREGTL 378
+ L + +G++M ++ + N+ +++LS R A L ++EG +
Sbjct: 177 PTRY--LDKYIGKKMEFKVIKFNKKRGNIVLSRR---AILQEERGKMRQEILDQIQEGMI 231
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
++G VK I YGA I +G + GLLHI++MS RV S+LLN G+ + V ++K
Sbjct: 232 VKGIVKNITDYGAFIDLGGID--GLLHITDMSWGRVKHPSNLLNMGDEIDVKILKFDSDK 289
Query: 438 DKISLSIADLESEP 451
+++SL + ++ P
Sbjct: 290 ERVSLGLKQVQPNP 303
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 368 WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGE 425
W + R GT++E V ++ +GA + + ++ GL+HIS +S RV D++ +G+
Sbjct: 478 WKKIETRFPVGTVVEAEVVRVTDFGAFVEL-ETGIEGLVHISELSEERVDKPEDVIKKGD 536
Query: 426 RVKVLVVKSMFPD--KISLSI 444
K +V+ S+ D KI+LSI
Sbjct: 537 VAKAMVI-SIDKDAKKIALSI 556
>gi|407983878|ref|ZP_11164515.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
gi|407374455|gb|EKF23434.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
Length = 478
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDKVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|266619787|ref|ZP_06112722.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM
13479]
gi|288868638|gb|EFD00937.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM
13479]
Length = 347
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + W + + + VK E GG + +EG+RAF+P ++L +
Sbjct: 134 GNIELSMKEANENRLWDKFAAMMADRTIVNVKIAEIVKGGAVAYLEGVRAFIPASKLAAE 193
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE-----------GTLL 379
V N L+E G+ + + + + L+LS +E A L+E G ++
Sbjct: 194 YVEN---LEEYNGKTIEATVITADAEAKKLVLSGKEP-ARAKLQEEKNKKIARCEVGAVM 249
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
+GTV + YGA I + ++ SGLLHIS +S R+ +L EG+ VKV ++ S+ +K
Sbjct: 250 DGTVDTLKEYGAFINL-ENGLSGLLHISQISNQRIKHPGAVLKEGQTVKVKII-SIKDNK 307
Query: 440 ISLSIADLE 448
ISLS+ LE
Sbjct: 308 ISLSMKALE 316
>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
gi|423509417|ref|ZP_17485948.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
gi|423594474|ref|ZP_17570505.1| ribosomal protein S1 [Bacillus cereus VD048]
gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
gi|401224271|gb|EJR30829.1| ribosomal protein S1 [Bacillus cereus VD048]
gi|402456708|gb|EJV88481.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
Length = 382
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|452976689|gb|EME76504.1| 30S ribosomal protein S1 [Bacillus sonorensis L12]
Length = 381
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFESKEIFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS ER+ L G +LEG V
Sbjct: 139 DFTDYK---GKTLTLMVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 23/208 (11%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQLNEP---IEVKFTEWN 308
F + G+TL+ R +LS R + K R ++ Q E +E K
Sbjct: 140 FTDYKGKTLTLMVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQDVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
WA + ++ G +L+GTV+++ +GA + + GL+HIS +S + + ++L
Sbjct: 259 LPGPWANIGEKVKPGDVLDGTVQRLVSFGAFVEVL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLE 448
EG+ VKV V+ + ++ISLS+ +LE
Sbjct: 318 EEGQDVKVKVLDVNEAEERISLSMKELE 345
>gi|392400474|ref|YP_006437074.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
gi|390531552|gb|AFM07281.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
Length = 487
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R W
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRTWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 251 AVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
gi|149752742|gb|EDM62673.1| S1 RNA binding domain protein [Dorea longicatena DSM 13814]
Length = 269
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+ V+ + + VK GG + +EGLR F+P + L ++ +L+ + + +
Sbjct: 69 WNVVKSYMEKGTVLPVKVEGIVNGGAIAMVEGLRGFIPASRL--SLSYIEDLETYLLKDI 126
Query: 347 YVQITRINEDTNDLILSEREAWATLNLRE----------GTLLEGTVKKIYPYGAQIRIG 396
V++ ++E N L+LS RE +E G+++ GTV+ + YGA + +G
Sbjct: 127 EVKVIDVDEANNRLVLSAREILQEKARKEREAKIAAVKVGSIVTGTVESLQNYGAFVDLG 186
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
D SGL+HIS +S R+ S +D+LN G+ V V ++ + KISLS+ L
Sbjct: 187 D-GLSGLVHISQISLKRIKSPADVLNVGDEVTVKII-GIKDGKISLSMKAL 235
>gi|62289016|ref|YP_220809.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941]
gi|82698954|ref|YP_413528.1| 30S ribosomal protein S1 [Brucella melitensis biovar Abortus 2308]
gi|189023292|ref|YP_001934060.1| 30S ribosomal protein S1 [Brucella abortus S19]
gi|260546309|ref|ZP_05822049.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260759107|ref|ZP_05871455.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
gi|260760832|ref|ZP_05873175.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
gi|376272063|ref|YP_005150641.1| 30S ribosomal protein S1 [Brucella abortus A13334]
gi|423167827|ref|ZP_17154530.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI435a]
gi|423169797|ref|ZP_17156472.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI474]
gi|423175213|ref|ZP_17161882.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI486]
gi|423177937|ref|ZP_17164582.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI488]
gi|423179230|ref|ZP_17165871.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI010]
gi|423182361|ref|ZP_17168998.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI016]
gi|423186697|ref|ZP_17173311.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI021]
gi|423190866|ref|ZP_17177474.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI259]
gi|62195148|gb|AAX73448.1| RpsA, ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941]
gi|82615055|emb|CAJ09981.1| Ribosomal protein S1:RNA binding S1 [Brucella melitensis biovar
Abortus 2308]
gi|189018864|gb|ACD71586.1| Ribosomal protein S1 [Brucella abortus S19]
gi|260096416|gb|EEW80292.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260669425|gb|EEX56365.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
gi|260671264|gb|EEX58085.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
gi|363399669|gb|AEW16639.1| ribosomal protein S1 [Brucella abortus A13334]
gi|374535657|gb|EHR07178.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI486]
gi|374539576|gb|EHR11079.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI435a]
gi|374543476|gb|EHR14959.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI474]
gi|374549139|gb|EHR20585.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI488]
gi|374552174|gb|EHR23603.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI016]
gi|374552546|gb|EHR23974.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI010]
gi|374554636|gb|EHR26047.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI259]
gi|374557409|gb|EHR28805.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. NI021]
Length = 566
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 25 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGTLKPGDEVEVYVERIENA 84
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 85 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 143
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 144 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 196
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 197 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 254
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LES+P
Sbjct: 255 NQETHRISLGMKQLESDP 272
>gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
Length = 403
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ A + +G LLS RRL + W + Q + E I+ GGL+ G+
Sbjct: 82 VVIATIGNDKENGSYLLSKRRLEARKVWAEIEQKFENKETIKATVLNVVKGGLVVDA-GV 140
Query: 320 RAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWATLN- 372
R FLP + L R V + K G+ + +QI I N LILS E+E A L
Sbjct: 141 RGFLPASMLSDRFVRDLNSFK---GQELELQIIEIEPSENRLILSRKALVEQERQAQLKA 197
Query: 373 ----LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
L G ++EG V ++ +GA + +G + GL+H+S +S + SD+L G+ VK
Sbjct: 198 VFEKLLPGDIVEGEVARLTNFGAFVDLGGVD--GLVHVSEISYDHINQPSDVLEVGQNVK 255
Query: 429 VLVVK-SMFPDKISLSIADLESEP 451
V ++ +ISLSI D + P
Sbjct: 256 VKILSLDQEKGRISLSIKDTQPGP 279
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 70/120 (58%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
+VG+ + V+I ++++ + LS ++ W + + G+ LEGTVK++ +GA +
Sbjct: 249 EVGQNVKVKILSLDQEKGRISLSIKDTQPGPWDDIAEKAPVGSTLEGTVKRLTTFGAFVE 308
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
+ GL+HIS +S + + +D+L EG+ V+V V+ S+ P+ ++ LSI L+ +P
Sbjct: 309 VF-PGVEGLVHISQISHQHIATPNDVLEEGQTVQVKVL-SVDPEQQRLGLSIKALQEKPA 366
>gi|400537313|ref|ZP_10800846.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
gi|400329342|gb|EJO86842.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
Length = 478
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|239917616|ref|YP_002957174.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
Length = 485
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 78 VVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEVVKGGL 137
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R AW
Sbjct: 138 ILDI-GLRGFLPAS--LVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVLS-RRAWLEQT 193
Query: 373 -----------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L +G + GTV I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 QSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 251
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V++ M +++SLS+ + +P
Sbjct: 252 EVGQEVTVEVLEVDMDRERVSLSLKATQEDP 282
>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 401
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S R+ + A+ ++++ + + IE K T GGLL + G R FLP A
Sbjct: 81 GDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-GTRGFLP-A 138
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLRE 375
L+S N F ++LK +G+ + V+IT I+ N LILS +E A+ + L
Sbjct: 139 SLIS--NRFVSDLKPYIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +G+ + IG + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 197 GDVVEGRVSRLTDFGSFVDIGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVI-GI 253
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 254 DNDRHRISLSIKQTEPSPF 272
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--IS 441
K + +GA + + D + GL+H+S ++ V SD+L G +VKV V+ ++ P K IS
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEIAYKHVDKPSDVLTVGPKVKVKVL-NIDPSKRRIS 347
Query: 442 LSIADLESEPGLFVSDK 458
LSI ++ E +D+
Sbjct: 348 LSIKQVDPENASSSNDR 364
>gi|153007374|ref|YP_001368589.1| 30S ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188]
gi|404316882|ref|ZP_10964815.1| 30S ribosomal protein S1 [Ochrobactrum anthropi CTS-325]
gi|151559262|gb|ABS12760.1| ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188]
Length = 566
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 25 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGTLKPGDEVEVYVERIENA 84
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 85 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 143
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 144 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 196
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 197 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 254
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LES+P
Sbjct: 255 NQETHRISLGMKQLESDP 272
>gi|406031209|ref|YP_006730099.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
gi|405129756|gb|AFS15011.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
Length = 480
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|365824972|ref|ZP_09366932.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
gi|365259160|gb|EHM89155.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
Length = 487
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR LLS +R + AW ++ +IK+ + + E GGL+ I GLR FLP + L
Sbjct: 101 GRLLLSKKRAQYERAWGQIEKIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPAS--LVE 157
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-----------LNLREGTLLE 380
+ +L+ VGR + +I ++++ N+++LS R AW L++G +
Sbjct: 158 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLQTLQKGQVRS 216
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ F ++
Sbjct: 217 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRER 274
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 275 VSLSLKATQEDP 286
>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
25291]
gi|417750612|ref|ZP_12398967.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
S397]
gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
gi|336457775|gb|EGO36769.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
S397]
Length = 480
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|406986413|gb|EKE07010.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 343
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 31/239 (12%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LS R ++ W R+ + + + I+ K N GGL+ + + L F+P ++L
Sbjct: 80 NGEMELSFRVAGNRLVWERMSEHVKAGDVIKAKILAANKGGLMLQSDALVGFMPVSQL-- 137
Query: 331 RVNNF------------TELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLN 372
NN+ L++ +G + V++ + D LI SE+E W +
Sbjct: 138 NPNNYPRVQGGDKNRILEHLRKFIGETIKVKVINADMDDEKLIFSEKEVWEEEQKNVLDS 197
Query: 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
+ G ++EG V + +GA I+ G N GL+HIS + R++ ++L G+++K ++
Sbjct: 198 YKVGDVVEGEVSALTSFGAFIKFG-KNLEGLVHISEIVWQRISHPREVLKVGDKIKAQII 256
Query: 433 KSMFPDKISLSIADLESEPGLFVSD---------KEVHIIFLFILLFNKQYSVWFLVHL 482
+ KI LSI L +P V D EVH I F L+ + L H+
Sbjct: 257 -DLNKSKIYLSIKRLVDDPWKKVKDTYKVGQIINAEVHKIEPFGLMVKLDDEIHGLAHI 314
>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 401
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S R+ + A+ ++++ + + IE K T GGLL + G R FLP A
Sbjct: 81 GDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-GTRGFLP-A 138
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLRE 375
L+S N F ++LK +G+ + V+IT I+ N LILS +E A+ + L
Sbjct: 139 SLIS--NRFVSDLKPYIGKAIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +G+ + IG + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVI-GI 253
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 254 DNDRHRISLSIKQTEPSPF 272
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 11/188 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
K + +GA + + D + GL+H+S +S V SD+L G++VKV V+ ++ P K +S
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEISYKHVDKPSDVLTVGQKVKVKVL-NIDPSKRRIS 347
Query: 444 IADLESEP 451
++ +++P
Sbjct: 348 LSIKQADP 355
>gi|124005220|ref|ZP_01690062.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134]
gi|123989472|gb|EAY29033.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134]
Length = 596
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS ++ AW +++ + IE GGL+ I G+ AFLP +++
Sbjct: 99 NGQLILSRKKAKILTAWKKIQAALDEDTIIEGIVKRRTKGGLIVDIYGIEAFLPGSQI-- 156
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + VG++M V++ +IN +++++S E++A NL +G +LE
Sbjct: 157 DVKPIRDFDIYVGKKMEVKVVKINYANDNVVVSHKVLIEKDLEEQKARILNNLEKGQVLE 216
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G +K + +G I +G + GLLHI+++S R++ ++LN ++V V+V+ F D
Sbjct: 217 GVIKNMTNFGVFIDLGGVD--GLLHITDISWGRISHPEEVLNLDQKVNVVVLD--FDDEK 272
Query: 439 -KISLSIADLESEP 451
+ISL + L P
Sbjct: 273 KRISLGMKQLTPHP 286
>gi|386857548|ref|YP_006261725.1| 30S ribosomal protein S1 [Deinococcus gobiensis I-0]
gi|380001077|gb|AFD26267.1| putative ribosomal protein S1 [Deinococcus gobiensis I-0]
Length = 569
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 100/188 (53%), Gaps = 15/188 (7%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS +R + W + ++++ +E EV+ E GGL+ ++EG+RAFLP +++ +R N
Sbjct: 122 VLSKKRADQDKGWRVLEKMQEADEAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 181
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAW---------ATL-NLREGTLLEGTVK 384
+L VG + V++ +N N +I+S R AT+ L G + EG V
Sbjct: 182 --DLDPFVGHPLMVKLIELNRKRNRVIISHRAIMEAEKAKAREATVGQLNAGAVFEGEVV 239
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLS 443
+I +G + +G + GL+H S ++ R D++ G++V+V V+ ++I+LS
Sbjct: 240 EITDFGVFVNLGGID--GLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLS 297
Query: 444 IADLESEP 451
+ L +P
Sbjct: 298 MKALTQDP 305
>gi|237814503|ref|ZP_04593501.1| ribosomal protein S1 [Brucella abortus str. 2308 A]
gi|237789340|gb|EEP63550.1| ribosomal protein S1 [Brucella abortus str. 2308 A]
Length = 576
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 35 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGTLKPGDEVEVYVERIENA 94
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 95 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 153
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 154 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 206
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 207 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 264
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LES+P
Sbjct: 265 NQETHRISLGMKQLESDP 282
>gi|379747704|ref|YP_005338525.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
gi|379755006|ref|YP_005343678.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
gi|379762496|ref|YP_005348893.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
gi|387876359|ref|YP_006306663.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
gi|443306116|ref|ZP_21035904.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
gi|378800068|gb|AFC44204.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
gi|378805222|gb|AFC49357.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
gi|378810438|gb|AFC54572.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
gi|386789817|gb|AFJ35936.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
gi|442767680|gb|ELR85674.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
Length = 480
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 489
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 145/309 (46%), Gaps = 57/309 (18%)
Query: 155 DDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMD 214
+D + E +++Y+ GD V G VV + +++ +++G G +L++E+
Sbjct: 22 EDLIKEIDKTIKYF--NDGDLVSGTVVKVDRDEVLLDIGYKTEGVILSREL--------- 70
Query: 215 FLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGR 273
+ D+ DAE V+ G + A VL + GR
Sbjct: 71 SIKHDVDPDAE-----------------------------VKVGDEIEALVLQKEDKEGR 101
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
LLS +R + AW + ++KQ + + E GGL+ I GLR FLP + L +
Sbjct: 102 LLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDI-GLRGFLPAS--LVEMR 158
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTV 383
+L+ +GR++ +I ++++ N+++LS R E T L++G + +G V
Sbjct: 159 RVRDLQPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVRKGVV 218
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DKISL 442
I +GA + +G + GL+H+S +S + S+++ G+ V V V+ F +++SL
Sbjct: 219 SSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSL 276
Query: 443 SIADLESEP 451
S+ + +P
Sbjct: 277 SLKATQEDP 285
>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
Length = 501
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
Length = 500
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|225626575|ref|ZP_03784614.1| ribosomal protein S1 [Brucella ceti str. Cudo]
gi|294851434|ref|ZP_06792107.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026]
gi|17983961|gb|AAL53096.1| ssu ribosomal protein s1p [Brucella melitensis bv. 1 str. 16M]
gi|225618232|gb|EEH15275.1| ribosomal protein S1 [Brucella ceti str. Cudo]
gi|294820023|gb|EFG37022.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026]
Length = 576
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 35 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGTLKPGDEVEVYVERIENA 94
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 95 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 153
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 154 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 206
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 207 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 264
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LES+P
Sbjct: 265 NQETHRISLGMKQLESDP 282
>gi|374313214|ref|YP_005059644.1| 30S ribosomal protein S1 [Granulicella mallensis MP5ACTX8]
gi|358755224|gb|AEU38614.1| ribosomal protein S1 [Granulicella mallensis MP5ACTX8]
Length = 654
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 16/198 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G L+S + R W ++ + P++ GGL I G++AFLP +++
Sbjct: 164 GGYLVSYEKALRHKVWDKLEEAANTKTPVKGMVLSRVKGGLTVDI-GIKAFLPGSQV--E 220
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----------AWATLNLREGTLLEG 381
V L +G + V++ ++N+ ++++S +E A L EG++ G
Sbjct: 221 VRPVRNLDGYIGTEIEVRVIKLNKKRGNVVISRKELLEEDQNAKKAVTLSTLEEGSVFTG 280
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK + YGA + +G GLLHI++MS R+T DL+N G+ ++V V+K ++
Sbjct: 281 VVKNLTDYGAFVDMG--GLDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKFDKEKQRV 338
Query: 441 SLSIADLESEPGLFVSDK 458
SL L +P L +++
Sbjct: 339 SLGFKQLTPDPWLDATER 356
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKS 434
G ++EG V+ + +GA I I D GL+H+SN+S T R+ S++L +GE+VK +V+
Sbjct: 447 GAVIEGRVRNLTDFGAFIEIEDG-IDGLVHVSNLSWTKRIKHPSEVLKKGEKVKAIVL-G 504
Query: 435 MFPDKISLSIADLESEPGLF 454
+ P+ LS+ + +P ++
Sbjct: 505 VEPENRRLSLGVKQLQPDVW 524
>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
Length = 479
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
Length = 500
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|23500942|ref|NP_697069.1| 30S ribosomal protein S1 [Brucella suis 1330]
gi|148560426|ref|YP_001258073.1| 30S ribosomal protein S1 [Brucella ovis ATCC 25840]
gi|161511120|ref|NP_540832.2| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
gi|161618017|ref|YP_001591904.1| 30S ribosomal protein S1 [Brucella canis ATCC 23365]
gi|163842303|ref|YP_001626707.1| 30S ribosomal protein S1 [Brucella suis ATCC 23445]
gi|225851571|ref|YP_002731804.1| 30S ribosomal protein S1 [Brucella melitensis ATCC 23457]
gi|256264918|ref|ZP_05467450.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
gi|256368492|ref|YP_003105998.1| 30S ribosomal protein S1 [Brucella microti CCM 4915]
gi|260563108|ref|ZP_05833594.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
gi|260567325|ref|ZP_05837795.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260755883|ref|ZP_05868231.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
gi|260884907|ref|ZP_05896521.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
gi|261215158|ref|ZP_05929439.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
gi|261221257|ref|ZP_05935538.1| ribosomal protein S1 [Brucella ceti B1/94]
gi|261314754|ref|ZP_05953951.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
gi|261316687|ref|ZP_05955884.1| ribosomal protein S1 [Brucella pinnipedialis B2/94]
gi|261324148|ref|ZP_05963345.1| ribosomal protein S1 [Brucella neotomae 5K33]
gi|261751352|ref|ZP_05995061.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513]
gi|261755917|ref|ZP_05999626.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686]
gi|261759142|ref|ZP_06002851.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|265983208|ref|ZP_06095943.1| ribosomal protein S1 [Brucella sp. 83/13]
gi|265987757|ref|ZP_06100314.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
gi|265993974|ref|ZP_06106531.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
gi|265997218|ref|ZP_06109775.1| ribosomal protein S1 [Brucella ceti M490/95/1]
gi|297247435|ref|ZP_06931153.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196]
gi|306839990|ref|ZP_07472784.1| ribosomal protein S1 [Brucella sp. NF 2653]
gi|306842680|ref|ZP_07475323.1| ribosomal protein S1 [Brucella sp. BO2]
gi|306843627|ref|ZP_07476228.1| ribosomal protein S1 [Brucella inopinata BO1]
gi|340789657|ref|YP_004755121.1| 30S ribosomal protein S1 [Brucella pinnipedialis B2/94]
gi|376275201|ref|YP_005115640.1| 30S ribosomal protein S1 [Brucella canis HSK A52141]
gi|376279730|ref|YP_005153736.1| 30S ribosomal protein S1 [Brucella suis VBI22]
gi|384210394|ref|YP_005599476.1| 30S ribosomal protein S1 [Brucella melitensis M5-90]
gi|384223724|ref|YP_005614888.1| 30S ribosomal protein S1 [Brucella suis 1330]
gi|384407493|ref|YP_005596114.1| 30S ribosomal protein S1 [Brucella melitensis M28]
gi|384444116|ref|YP_005602835.1| 30S ribosomal protein S1 [Brucella melitensis NI]
gi|23346797|gb|AAN28984.1| ribosomal protein S1 [Brucella suis 1330]
gi|148371683|gb|ABQ61662.1| ribosomal protein S1 [Brucella ovis ATCC 25840]
gi|161334828|gb|ABX61133.1| ribosomal protein S1 [Brucella canis ATCC 23365]
gi|163673026|gb|ABY37137.1| ribosomal protein S1 [Brucella suis ATCC 23445]
gi|225639936|gb|ACN99849.1| ribosomal protein S1 [Brucella melitensis ATCC 23457]
gi|255998650|gb|ACU47049.1| 30S ribosomal protein S1 [Brucella microti CCM 4915]
gi|260153124|gb|EEW88216.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
gi|260156843|gb|EEW91923.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260675991|gb|EEX62812.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
gi|260874435|gb|EEX81504.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
gi|260916765|gb|EEX83626.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
gi|260919841|gb|EEX86494.1| ribosomal protein S1 [Brucella ceti B1/94]
gi|261295910|gb|EEX99406.1| ribosomal protein S1 [Brucella pinnipedialis B2/94]
gi|261300128|gb|EEY03625.1| ribosomal protein S1 [Brucella neotomae 5K33]
gi|261303780|gb|EEY07277.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
gi|261739126|gb|EEY27122.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|261741105|gb|EEY29031.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513]
gi|261745670|gb|EEY33596.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686]
gi|262551686|gb|EEZ07676.1| ribosomal protein S1 [Brucella ceti M490/95/1]
gi|262764955|gb|EEZ10876.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
gi|263095403|gb|EEZ19004.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
gi|264659954|gb|EEZ30215.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
gi|264661800|gb|EEZ32061.1| ribosomal protein S1 [Brucella sp. 83/13]
gi|297174604|gb|EFH33951.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196]
gi|306276318|gb|EFM58018.1| ribosomal protein S1 [Brucella inopinata BO1]
gi|306287126|gb|EFM58628.1| ribosomal protein S1 [Brucella sp. BO2]
gi|306404954|gb|EFM61239.1| ribosomal protein S1 [Brucella sp. NF 2653]
gi|326408040|gb|ADZ65105.1| 30S ribosomal protein S1 [Brucella melitensis M28]
gi|326537757|gb|ADZ85972.1| ribosomal protein S1 [Brucella melitensis M5-90]
gi|340558115|gb|AEK53353.1| 30S ribosomal protein S1 [Brucella pinnipedialis B2/94]
gi|343381904|gb|AEM17396.1| 30S ribosomal protein S1 [Brucella suis 1330]
gi|349742113|gb|AEQ07656.1| 30S ribosomal protein S1 [Brucella melitensis NI]
gi|358257329|gb|AEU05064.1| 30S ribosomal protein S1 [Brucella suis VBI22]
gi|363403768|gb|AEW14063.1| ribosomal protein S1 [Brucella canis HSK A52141]
Length = 566
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 25 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGTLKPGDEVEVYVERIENA 84
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 85 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 143
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 144 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 196
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 197 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 254
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LES+P
Sbjct: 255 NQETHRISLGMKQLESDP 272
>gi|73662579|ref|YP_301360.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418576137|ref|ZP_13140283.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|84029459|sp|Q49XT0.1|RS1_STAS1 RecName: Full=30S ribosomal protein S1
gi|72495094|dbj|BAE18415.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325199|gb|EHY92331.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 393
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ N+ IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F++ + G+ + +++ ++ N +ILS + A N L EG +
Sbjct: 140 TDFIEDFSDFE---GQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EG V ++ +GA + IG + GL+H+S +S V S D+++ GE V V +KS+ D
Sbjct: 197 IEGKVARLTNFGAFVDIGGVD--GLVHVSELSHEHVKSPEDVVSIGETVNVK-IKSVDKD 253
Query: 439 --KISLSIADLESEP 451
+ISLSI D P
Sbjct: 254 SERISLSIKDTLPSP 268
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 293 IKQLNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQI 350
++ LNE IE K G I G+ + +EL E +G + V+I
Sbjct: 188 LESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 351 TRINEDTNDLILSEREAWATL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLL 404
+++D+ + LS ++ + EG ++EGTV ++ +GA + I GL+
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEI-KPGVQGLV 306
Query: 405 HISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
HIS +S + + S S+ L G+ V V V+ + ++ISLSI
Sbjct: 307 HISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSI 347
>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
gi|423486714|ref|ZP_17463396.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
gi|423492438|ref|ZP_17469082.1| ribosomal protein S1 [Bacillus cereus CER057]
gi|423500771|ref|ZP_17477388.1| ribosomal protein S1 [Bacillus cereus CER074]
gi|423516257|ref|ZP_17492738.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
gi|423601062|ref|ZP_17577062.1| ribosomal protein S1 [Bacillus cereus VD078]
gi|423663521|ref|ZP_17638690.1| ribosomal protein S1 [Bacillus cereus VDM022]
gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
gi|401155057|gb|EJQ62471.1| ribosomal protein S1 [Bacillus cereus CER074]
gi|401155922|gb|EJQ63329.1| ribosomal protein S1 [Bacillus cereus CER057]
gi|401165163|gb|EJQ72482.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
gi|401231608|gb|EJR38111.1| ribosomal protein S1 [Bacillus cereus VD078]
gi|401295421|gb|EJS01045.1| ribosomal protein S1 [Bacillus cereus VDM022]
gi|402438591|gb|EJV70600.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
Length = 382
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVIVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
Length = 490
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + Q+K+ + +E E GGL+ I GLR FLP + L
Sbjct: 103 GRLILSKKRAQYERAWGTIEQVKEEDGVVEGTVIEVVKGGLILDI-GLRGFLPAS--LVE 159
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-----------LNLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 160 MRRVRDLQPYVGQTLEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRHGFLTQLQKGQIRK 218
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 219 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRER 276
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 277 VSLSLKATQEDP 288
>gi|449094784|ref|YP_007427275.1| 30S ribosomal protein [Bacillus subtilis XF-1]
gi|449028699|gb|AGE63938.1| 30S ribosomal protein [Bacillus subtilis XF-1]
Length = 382
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 18/184 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQEFLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIAD 446
SI D
Sbjct: 254 SIKD 257
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ ++ Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQEFLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS ++
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKDT 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + ++ G +LEGTV+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEETP 348
>gi|405981074|ref|ZP_11039403.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
gi|404393093|gb|EJZ88150.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
Length = 490
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR LLS +R + AW + +IKQ + + E GGL+ I GLR FLP + L
Sbjct: 99 GRLLLSKKRAQYERAWGSIEKIKQEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 155
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-----------LNLREGTLLE 380
+ +L+ VGR + +I ++++ N+++LS R AW L++G +
Sbjct: 156 MRRVRDLQPYVGREIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSSFLQTLQKGQIRN 214
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 215 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 272
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 273 VSLSLKATQEDP 284
>gi|390945279|ref|YP_006409040.1| 30S ribosomal protein S1 [Belliella baltica DSM 15883]
gi|390418707|gb|AFL86285.1| ribosomal protein S1 [Belliella baltica DSM 15883]
Length = 589
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKARMVRAWSDIEDALEHDNVIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDIYVGKKMEVKVVKINHTNDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+++V+ F D
Sbjct: 217 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQIVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM
44985]
gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985]
Length = 482
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G V+ A VL + GR +LS +R + AW V K+ +E ++ E GGL
Sbjct: 79 VVSVGDVVEALVLTKEDKEGRLILSKKRAQYERAWGEVEAHKEKDESVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 IVDI-GLRGFLPAS--LVDMRRVRDLQPYIGKEIETKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G + I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRTEFLNRLQKGNIKKGVISSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVKSMFP-DKISLSIADLESEP 451
G+ V V V+ F +++SLS+ + +P
Sbjct: 253 KVGDEVTVEVLDVDFSRERVSLSLKATQEDP 283
>gi|417837661|ref|ZP_12483899.1| SSU ribosomal protein S1p [Lactobacillus johnsonii pf01]
gi|338761204|gb|EGP12473.1| SSU ribosomal protein S1p [Lactobacillus johnsonii pf01]
Length = 400
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ + ++ + + +E T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ +R ++LK +G++M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISNRY--VSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+HIS +S + SD+L G+ VKV V+ +
Sbjct: 199 DTVEGKVSRLTGFGAFVDVGGVD--GLVHISEISYKHIDKPSDVLKAGQDVKVKVI-GID 255
Query: 437 PDK--ISLSIADL------ESEPGLFVSD---KEVHIIFLFILLFNKQYSVWFLVHL 482
DK ISLSI E+ GL D EV + F + LVH+
Sbjct: 256 DDKHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHV 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT L EG ++EG V
Sbjct: 231 YKHIDKPSDVLKAGQDVKVKVIGIDDDKHRISLSIKQTLPSPFEEATEGLHEGDIIEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA I + D + GL+H+S ++ V SD+L G+ VKV V+ S+ P +IS
Sbjct: 291 KTLTSFGAFIEVADGIQ-GLVHVSEIANKHVDKPSDVLKVGQTVKVKVL-SVDPSDRRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|268319594|ref|YP_003293250.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
gi|262397969|emb|CAX66983.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
Length = 400
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ + ++ + + +E T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ +R ++LK +G++M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISNRY--VSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+HIS +S + SD+L G+ VKV V+ +
Sbjct: 199 DTVEGKVSRLTGFGAFVDVGGVD--GLVHISEISYKHIDKPSDVLKAGQDVKVKVI-GID 255
Query: 437 PDK--ISLSIADL------ESEPGLFVSD---KEVHIIFLFILLFNKQYSVWFLVHL 482
DK ISLSI E+ GL D EV + F + LVH+
Sbjct: 256 DDKHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHV 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT L EG ++EG V
Sbjct: 231 YKHIDKPSDVLKAGQDVKVKVIGIDDDKHRISLSIKQTLPSPFEEATEGLHEGDIIEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA I + D + GL+H+S ++ V SD+L G+ VKV V+ S+ P +IS
Sbjct: 291 KTLTSFGAFIEVADGIQ-GLVHVSEIANKHVDKPSDVLKVGQTVKVKVL-SVDPSDRRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|319779316|ref|YP_004130229.1| 30S ribosomal protein S1 [Taylorella equigenitalis MCE9]
gi|397661554|ref|YP_006502254.1| 30s ribosomal protein S1 [Taylorella equigenitalis ATCC 35865]
gi|317109340|gb|ADU92086.1| SSU ribosomal protein S1p [Taylorella equigenitalis MCE9]
gi|394349733|gb|AFN35647.1| 30s ribosomal protein S1 [Taylorella equigenitalis ATCC 35865]
gi|399114948|emb|CCG17744.1| 30s ribosomal protein S1 [Taylorella equigenitalis 14/56]
Length = 569
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S R R AW ++ + E I T GGL G+RAFLP + + R
Sbjct: 90 GETVVSRDRAKRLAAWLKLEEALNSGELITGTITGKVKGGLTVMTNGIRAFLPGSLVDVR 149
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLE 380
V + T + K M ++ +++ N+++LS R + NL+EG++++
Sbjct: 150 PVKDTTPYENKT---MEFKVIKLDRKRNNVVLSRRSVLESSMGEELQKLLENLQEGSVVK 206
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
GTVK I YGA + +G + GLLHI++M+ RV S++L G+ V+ V+K ++
Sbjct: 207 GTVKNITEYGAFVDLGGID--GLLHITDMAWRRVRHPSEVLTVGQEVEAKVLKFDKDKNR 264
Query: 440 ISLSIADLESEP 451
+SL I L +P
Sbjct: 265 VSLGIKQLGEDP 276
>gi|402311628|ref|ZP_10830565.1| putative 30S ribosomal protein S1 [Lachnospiraceae bacterium ICM7]
gi|400371276|gb|EJP24237.1| putative 30S ribosomal protein S1 [Lachnospiraceae bacterium ICM7]
Length = 232
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 16/159 (10%)
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTND 359
+VK TE GG + +E +RAF+P ++L ++ V N E +G+ + V +
Sbjct: 45 KVKITEVVKGGCIAFLEEVRAFIPASQLSTQYVENLDEF---LGKSLEVVVITSEPAKKK 101
Query: 360 LILSER---------EAWATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
L+LS R E A L+ ++ G +LEG V I YGA I +GD SGLLH+S +
Sbjct: 102 LVLSHRAIEKEEAKKERQAKLDSVKVGDVLEGKVDSIKDYGAFIDLGD-GISGLLHVSQI 160
Query: 410 SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
S RV + + +L EGE VKV V + KISLS LE
Sbjct: 161 SNQRVKNPAAVLKEGETVKVKVT-GIKDGKISLSKKALE 198
>gi|350266463|ref|YP_004877770.1| hypothetical protein GYO_2519 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599350|gb|AEP87138.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 382
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 18/184 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIAD 446
SI D
Sbjct: 254 SIKD 257
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ +++ Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS ++
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKDT 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + ++ G +LEGTV+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKSGDVLEGTVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEEAP 348
>gi|418016281|ref|ZP_12655846.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|345506616|gb|EGX28910.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-NYU]
Length = 858
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 23/203 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +FR+ + ++ NE I V E GG++ ++ F+P + L
Sbjct: 587 GRIVLSRLEIFREKSLEILKNKFNNNERISVVVKEDVKGGVIVEFNSIKLFVPASHLDFV 646
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLIL--------------SEREAWATLNLREG 376
+ N E VGR + V++ + E+ N + E E W +L L G
Sbjct: 647 HIENLNEF---VGRELEVKVIEMKEEKNQFKIIGSRRAVLEEEKKIREDEIWKSLVL--G 701
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
++E V++I +GA + + + GLLHIS +S R+ VSD+LN G+++KV ++
Sbjct: 702 DVVECEVRRINTFGAFVDVKGID--GLLHISEISWGRIDKVSDVLNIGDKIKVKIIDLDI 759
Query: 437 PD-KISLSIADLESEPGLFVSDK 458
+ K+SLS+ L+++P V +K
Sbjct: 760 ENRKLSLSMKVLQNDPWSNVDEK 782
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 10/161 (6%)
Query: 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRIN 354
L + +E + NT G ++G+ L +E+ R++ +++ +G ++ V+I ++
Sbjct: 700 LGDVVECEVRRINTFGAFVDVKGIDGLLHISEISWGRIDKVSDVL-NIGDKIKVKIIDLD 758
Query: 355 EDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISN 408
+ L LS + + W+ ++ + G ++ G V + +GA + + S GL+HIS
Sbjct: 759 IENRKLSLSMKVLQNDPWSNVDEKYPVGAVVLGKVVRFAEFGAFVELEPS-IDGLVHISQ 817
Query: 409 MSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLE 448
+S RV ++D L G+ VK +V+ +K I LSI +E
Sbjct: 818 ISHKRVNDIADFLQIGQEVKAKIVEINKENKRIELSIKVIE 858
>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
gi|417885402|ref|ZP_12529556.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
gi|341595324|gb|EGS37973.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
Length = 413
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ +++ +G LLS RRL + W +++ E I K T+ GGL+ G+
Sbjct: 79 VVISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAKVTQAVKGGLVVDA-GV 137
Query: 320 RAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-------- 370
R F+P + + V + + K G+ + +I I N LILS +E
Sbjct: 138 RGFVPASMITDHYVEDLNQFK---GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEK 194
Query: 371 --LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
L+ G ++EG V ++ +GA + +G + GL+H+S +S V SD+L+ G+ VK
Sbjct: 195 IFAELQPGDVVEGKVARMTNFGAFVDLGGVD--GLVHVSEISYDHVDKPSDVLSAGQDVK 252
Query: 429 VLVVKSMFPDKISLSIADLESEPG 452
V V+ S+ PD+ +S++ ++ PG
Sbjct: 253 VKVL-SVDPDRERISLSIKQTLPG 275
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ D + LS ++ W + + G+ L GTVK++ +GA + +
Sbjct: 248 GQDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAPAGSTLTGTVKRLTSFGAFVEVF 307
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEP 451
GL+HIS +S + + +D+L G+ V+V V+ ++ P+ ++ LS+ LE P
Sbjct: 308 -PGVEGLVHISQISHKHIATPADVLKPGQEVQVKVL-NVDPERQRLGLSMKALEERP 362
>gi|296332972|ref|ZP_06875429.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674924|ref|YP_003866596.1| RNA degradation presenting factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|443634904|ref|ZP_21119076.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|296149823|gb|EFG90715.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413168|gb|ADM38287.1| RNA degradation presenting factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|443345329|gb|ELS59394.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 382
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 18/184 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIAD 446
SI D
Sbjct: 254 SIKD 257
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ +++ Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS ++
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKDT 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + ++ G +LEGTV+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEEAP 348
>gi|406833525|ref|ZP_11093119.1| RNA binding S1 domain-containing protein [Schlesneria paludicola
DSM 18645]
Length = 540
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 21/158 (13%)
Query: 308 NTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366
N GGL + G+RAFLP +++ L V++ L VG+++ VQIT +N +L++S R
Sbjct: 260 NKGGLEVTVGGMRAFLPASQVDLGFVSSMESL---VGQKLTVQITELNPAKRNLVVSRRA 316
Query: 367 A------------WATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV 414
W + + G GTVK I YGA I +G ++ G LHI MS TRV
Sbjct: 317 VMIAERKELAGAFWEKVEV--GQQYSGTVKTIKDYGAFIDLGGAD--GFLHIGEMSWTRV 372
Query: 415 TSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S++L EG++ V+V+ KI L + L P
Sbjct: 373 KHPSEVLQEGQQCDVVVLSLDREKQKIGLGMRQLAHNP 410
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
G + G FL E+ +RV + +E+ ++ G++ V + ++ + + L R+
Sbjct: 350 GAFIDLGGADGFLHIGEMSWTRVKHPSEVLQE-GQQCDVVVLSLDREKQKIGLGMRQLAH 408
Query: 367 -AWATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W ++N G + G V + +GA + + + GL+HIS + R+ V+D++N
Sbjct: 409 NPWGSVNETYAVGKEVSGKVTRTTDFGAFVEL-EPGVEGLIHISEIDHQRIRKVTDVVNV 467
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESEP 451
G+ ++ V++ + PD +ISLS+ L+ +P
Sbjct: 468 GQEIQAQVLE-VAPDRQRISLSMKALKQKP 496
>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
Length = 500
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
Length = 413
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +IK+ + +E E GGL
Sbjct: 6 VVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEVVKGGL 65
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
+ I GLR FLP + L + +L +G+++ +I ++++ N+++LS R AW
Sbjct: 66 ILDI-GLRGFLPAS--LVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVLS-RRAWLEQT 121
Query: 373 -----------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L +G + GTV I +GA + +G + GL+H+S +S + S+++
Sbjct: 122 QSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 179
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V++ M +++SLS+ + +P
Sbjct: 180 EVGQEVTVEVLEVDMDRERVSLSLKATQEDP 210
>gi|456063810|ref|YP_007502780.1| Ribosomal protein S1 [beta proteobacterium CB]
gi|455441107|gb|AGG34045.1| Ribosomal protein S1 [beta proteobacterium CB]
Length = 557
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS + R +W + + + E + T GGL + G+RAFLP + + +R
Sbjct: 80 GDTILSRDKAKRLASWMNLEKALEQAEIVTGTVTGKVKGGLTVMVNGIRAFLPGSLVDTR 139
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
T E G+ M ++ +++ N+++LS R E A L NL+EG++++G
Sbjct: 140 PIKDTSPYE--GKTMEFKVIKLDRKRNNVVLSRRAVVEASQGEERAKLMSNLKEGSVVQG 197
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK I YGA + +G + GLLHI++++ RV S++L G+ V ++K +++
Sbjct: 198 IVKNITDYGAFVDLGGID--GLLHITDLAWRRVRHPSEMLTVGQEVTAKILKFDQEKNRV 255
Query: 441 SLSIADLESEPGLFVS 456
SL + L +P + ++
Sbjct: 256 SLGVKQLGDDPWVGIA 271
>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S R+ + A+ ++++ + + IE K T GGLL + G R FLP A
Sbjct: 81 GDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-GTRGFLP-A 138
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLRE 375
L+S N F ++LK +G+ + V+IT I+ N LILS +E A+ + L
Sbjct: 139 SLIS--NRFVSDLKPYIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +G+ + IG + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVI-GI 253
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 254 DNDRHRISLSIKQTEPSPF 272
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 11/188 (5%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
K + +GA + + D + GL+H+S +S V SD+L G++VKV V+ ++ P K +S
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEISYKHVDKPSDVLTVGQKVKVKVL-NIDPSKRRIS 347
Query: 444 IADLESEP 451
++ +++P
Sbjct: 348 LSIKQADP 355
>gi|440776925|ref|ZP_20955754.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436722913|gb|ELP46799.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 435
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 34 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 93
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 94 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 149
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 150 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 207
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 208 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 238
>gi|392416422|ref|YP_006453027.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
gi|390616198|gb|AFM17348.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
Length = 480
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|441520462|ref|ZP_21002129.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
gi|441459908|dbj|GAC60090.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
Length = 489
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW LN L++G + +
Sbjct: 155 MRRVRDLQPYIGKEVEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLQKGQVRK 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 214 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRER 271
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 272 VSLSLKATQEDP 283
>gi|396584066|ref|ZP_10484565.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
gi|395548355|gb|EJG15630.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
Length = 478
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 139/301 (46%), Gaps = 59/301 (19%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D
Sbjct: 26 TIKYF--NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHD------------- 70
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
V DD +A+ G + A VL + GR LLS +R
Sbjct: 71 ------------VNPDDVVAV-------------GDQIEALVLQKEDKEGRLLLSKKRAQ 105
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
+ AW ++ +IK+ + + E GGL+ I GLR FLP + L + +L +
Sbjct: 106 YERAWGKIEKIKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYI 162
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLEGTVKKIYPYGA 391
GR + +I ++++ N+++LS R AW L++G + G V I +GA
Sbjct: 163 GREIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFGA 221
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ +G + GL+H+S +S + S+++ G+ V V V+ M +++SLS+ + +
Sbjct: 222 FVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279
Query: 451 P 451
P
Sbjct: 280 P 280
>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
Length = 499
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|417965769|ref|ZP_12607251.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial
[Candidatus Arthromitus sp. SFB-4]
gi|380335864|gb|EIA25965.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial
[Candidatus Arthromitus sp. SFB-4]
Length = 851
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 23/203 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +FR+ + ++ NE I V E GG++ ++ F+P + L
Sbjct: 580 GRIVLSRLEIFREKSLEILKNKFNNNERISVVVKEDVKGGVIVEFNSIKLFVPASHLDFV 639
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLIL--------------SEREAWATLNLREG 376
+ N E VGR + V++ + E+ N + E E W +L L G
Sbjct: 640 HIENLNEF---VGRELEVKVIEMKEEKNQFKIIGSRRAVLEEEKKIREDEIWKSLVL--G 694
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
++E V++I +GA + + + GLLHIS +S R+ VSD+LN G+++KV ++
Sbjct: 695 DVVECEVRRINTFGAFVDVKGID--GLLHISEISWGRIDKVSDVLNIGDKIKVKIIDLDI 752
Query: 437 PD-KISLSIADLESEPGLFVSDK 458
+ K+SLS+ L+++P V +K
Sbjct: 753 ENRKLSLSMKVLQNDPWSNVDEK 775
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 10/161 (6%)
Query: 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRIN 354
L + +E + NT G ++G+ L +E+ R++ +++ +G ++ V+I ++
Sbjct: 693 LGDVVECEVRRINTFGAFVDVKGIDGLLHISEISWGRIDKVSDVL-NIGDKIKVKIIDLD 751
Query: 355 EDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISN 408
+ L LS + + W+ ++ + G ++ G V + +GA + + S GL+HIS
Sbjct: 752 IENRKLSLSMKVLQNDPWSNVDEKYPVGAVVLGKVVRFAEFGAFVELEPS-IDGLVHISQ 810
Query: 409 MSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLE 448
+S RV ++D L G+ VK +V+ +K I LSI +E
Sbjct: 811 ISHKRVNDIADFLQIGQEVKAKIVEINKENKRIELSIKVIE 851
>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
Length = 490
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW LN L++G + +
Sbjct: 155 MRRVRDLQPYIGKEVEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLQKGQVRK 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 214 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRER 271
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 272 VSLSLKATQEDP 283
>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
Length = 500
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S R+ + A+ ++++ + + IE K T GGLL + G R FLP A
Sbjct: 81 GDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-GTRGFLP-A 138
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLRE 375
L+S N F ++LK +G+ + V+IT I+ N LILS +E A+ + L
Sbjct: 139 SLIS--NRFVSDLKPYIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +G+ + IG + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVI-GI 253
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 254 DNDRHRISLSIKQTEPSPF 272
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--IS 441
K + +GA + + D + GL+H+S ++ V SD+L G +VKV V+ ++ P K IS
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEIAYKHVDKPSDVLTVGPKVKVKVL-NIDPSKRRIS 347
Query: 442 LSIADLESEPGLFVSDK 458
LSI ++ E +D+
Sbjct: 348 LSIKQVDPENASSSNDR 364
>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
Length = 403
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 252 RPVVETGTVLFAEVL----GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEW 307
R +V+ G A VL G +G S RL + A+ ++++ + IE T
Sbjct: 63 RDLVKPGDKFKALVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVTSS 122
Query: 308 NTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER-- 365
GGLL + G R FLP + + +R ++LK +G+ M ++IT I+ + N LILS +
Sbjct: 123 VRGGLLVDV-GTRGFLPASLISNRY--VSDLKPYIGKTMKLKITEIDPNKNRLILSHKDL 179
Query: 366 ------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
EA+ + L G ++EG V ++ +G+ I +G + GL+HIS +S V
Sbjct: 180 VEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDVGGVD--GLVHISEISYKHVDKP 237
Query: 418 SDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454
SD+L G+ VKV V+ + D+ +S++ ++EP F
Sbjct: 238 SDVLKVGQDVKVKVI-GIDNDRHRISLSIKQTEPSPF 273
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ +V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG + EG V
Sbjct: 231 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA + + D + GL+H+S +S V SD+L G+ VKV V+ ++ P+ +IS
Sbjct: 291 KSLTNFGAFVEVADGIQ-GLVHVSEISNKHVDKPSDVLKVGQTVKVKVL-NIDPNDRRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|406661086|ref|ZP_11069211.1| 70 kDa antigen [Cecembia lonarensis LW9]
gi|405555169|gb|EKB50216.1| 70 kDa antigen [Cecembia lonarensis LW9]
Length = 588
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKARMVRAWQDIEDALANDSVIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDVYVGKKMEVKVVKINHTNDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+V+V+ F D
Sbjct: 217 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQVVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|404443511|ref|ZP_11008680.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
gi|403655333|gb|EJZ10196.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
Length = 480
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
Length = 500
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
Length = 500
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
+ +L +G+++ +I ++++ N+++LS R E T L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|253576395|ref|ZP_04853725.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844288|gb|EES72306.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 411
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 106/192 (55%), Gaps = 20/192 (10%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR- 331
R +LS R + + AW + + Q E EV + GG++ + G+R F+P A ++ R
Sbjct: 92 RLVLSKRAIDSENAWEELGKKFQNGEVFEVTVADVVKGGIVADV-GVRGFIP-ASMVERH 149
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLE 380
V +F++ K GR + V++ ++ + N +ILS+++ L+EG +LE
Sbjct: 150 FVEDFSDYK---GRTLRVKVKELDRENNKVILSQKDVLDEEFEANKQKVMAELKEGQVLE 206
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+++ +GA + +G + GL+H+S ++ V +D+L+EG++ + V + P+K
Sbjct: 207 GTVQRLTQFGAFVDVGGVD--GLVHVSEIAWNHVDKPADVLSEGDK-VKVKVLKVDPEKG 263
Query: 441 SLSIADLESEPG 452
+S++ ++PG
Sbjct: 264 KISLSIKAAQPG 275
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 369 ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
A G ++ G VK++ +GA + I GL+HIS +S + + ++L EG+ V+
Sbjct: 280 AAEKFHTGDIVTGEVKRLVNFGAFVEIA-PGVEGLVHISQISHKHIGTPHEVLKEGQTVQ 338
Query: 429 VLVVKSMFPDK-ISLSIADLESEPG 452
V V+ +K +SLSI + E P
Sbjct: 339 VKVLDVNPSEKRVSLSIKETEEAPA 363
>gi|410029865|ref|ZP_11279695.1| 30S ribosomal protein S1 [Marinilabilia sp. AK2]
Length = 588
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKARMVRAWQDIEDALANDSVIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDVYVGKKMEVKVVKINHTNDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+V+V+ F D
Sbjct: 217 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQVVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|342732316|ref|YP_004771155.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|384455719|ref|YP_005668314.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|417959364|ref|ZP_12602194.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-1]
gi|417966313|ref|ZP_12607700.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-5]
gi|417967934|ref|ZP_12608990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-co]
gi|418372571|ref|ZP_12964663.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-SU]
gi|342329771|dbj|BAK56413.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|346984062|dbj|BAK79738.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380333590|gb|EIA24140.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-1]
gi|380340516|gb|EIA29097.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-co]
gi|380342240|gb|EIA30685.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-mouse-SU]
gi|380343072|gb|EIA31490.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-5]
Length = 850
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 23/203 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
GR +LS +FR+ + ++ NE I V E GG++ ++ F+P + L
Sbjct: 579 GRIVLSRLEIFREKSLEILKNKFNNNERISVVVKEDVKGGVIVEFNSIKLFVPASHLDFV 638
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLIL--------------SEREAWATLNLREG 376
+ N E VGR + V++ + E+ N + E E W +L L G
Sbjct: 639 HIENLNEF---VGRELEVKVIEMKEEKNQFKIIGSRRAVLEEEKKIREDEIWKSLVL--G 693
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
++E V++I +GA + + + GLLHIS +S R+ VSD+LN G+++KV ++
Sbjct: 694 DVVECEVRRINTFGAFVDVKGID--GLLHISEISWGRIDKVSDVLNIGDKIKVKIIDLDI 751
Query: 437 PD-KISLSIADLESEPGLFVSDK 458
+ K+SLS+ L+++P V +K
Sbjct: 752 ENRKLSLSMKVLQNDPWSNVDEK 774
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 10/161 (6%)
Query: 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRIN 354
L + +E + NT G ++G+ L +E+ R++ +++ +G ++ V+I ++
Sbjct: 692 LGDVVECEVRRINTFGAFVDVKGIDGLLHISEISWGRIDKVSDVL-NIGDKIKVKIIDLD 750
Query: 355 EDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISN 408
+ L LS + + W+ ++ + G ++ G V + +GA + + S GL+HIS
Sbjct: 751 IENRKLSLSMKVLQNDPWSNVDEKYPVGAVVLGKVVRFAEFGAFVELEPS-IDGLVHISQ 809
Query: 409 MSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLE 448
+S RV ++D L G+ VK +V+ +K I LSI +E
Sbjct: 810 ISHKRVNDIADFLQIGQEVKAKIVEINKENKRIELSIKVIE 850
>gi|320093717|ref|ZP_08025582.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319979338|gb|EFW10828.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 479
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 59/301 (19%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D
Sbjct: 26 TIKYF--NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHD------------- 70
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
V DD +A+ G + A VL + GR LLS +R
Sbjct: 71 ------------VNPDDVVAV-------------GDQVEALVLQKEDKEGRLLLSKKRAQ 105
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
+ AW ++ ++K+ + + E GGL+ I GLR FLP + L + +L +
Sbjct: 106 YERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYI 162
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLEGTVKKIYPYGA 391
GR + +I ++++ N+++LS R AW L++G + GTV I +GA
Sbjct: 163 GRELDAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLHTLQKGQVRTGTVSSIVNFGA 221
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ +G + GL+H+S +S + S+++ G+ V V V+ M +++SLS+ + +
Sbjct: 222 FVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279
Query: 451 P 451
P
Sbjct: 280 P 280
>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
Length = 481
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|422011939|ref|ZP_16358697.1| 30S ribosomal protein S1 [Actinomyces georgiae F0490]
gi|394762348|gb|EJF44592.1| 30S ribosomal protein S1 [Actinomyces georgiae F0490]
Length = 479
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 59/301 (19%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D
Sbjct: 26 TIKYF--NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHD------------- 70
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
V DD +A+ G + A VL + GR LLS +R
Sbjct: 71 ------------VNPDDVVAV-------------GDQVEALVLQKEDKEGRLLLSKKRAQ 105
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
+ AW ++ ++K+ + + E GGL+ I GLR FLP + L + +L +
Sbjct: 106 YERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYI 162
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLEGTVKKIYPYGA 391
GR + +I ++++ N+++LS R AW L++G + GTV I +GA
Sbjct: 163 GRELDAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLHTLQKGQVRTGTVSSIVNFGA 221
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ +G + GL+H+S +S + S+++ G+ V V V+ M +++SLS+ + +
Sbjct: 222 FVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279
Query: 451 P 451
P
Sbjct: 280 P 280
>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S R+ + A+ ++++ + + IE K T GGLL + G R FLP A
Sbjct: 81 GDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-GTRGFLP-A 138
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLRE 375
L+S N F ++LK +G+ + V+IT I+ N LILS +E A+ + L
Sbjct: 139 SLIS--NRFVSDLKPYIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +G+ + IG + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 197 GDVVEGRVSRLTNFGSFVDIGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVI-GI 253
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 254 DNDRHRISLSIKQTEPSPF 272
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--IS 441
K + +GA + + D + GL+H+S ++ V SD+L G +VKV V+ ++ P K IS
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEIAYKHVDKPSDVLTVGPKVKVKVL-NIDPSKRRIS 347
Query: 442 LSIADLESEPGLFVSDK 458
LSI ++ E +D+
Sbjct: 348 LSIKQVDPENASSSNDR 364
>gi|297559937|ref|YP_003678911.1| RNA binding S1 domain-containing protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 496
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV G + A VL + GR +LS +R + AW + +IK+ + + E
Sbjct: 78 PGE-VVAVGDQVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVV 136
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 137 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAW 192
Query: 369 ----------ATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
LN L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 193 LEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 250
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ M +++SLS+ + +P
Sbjct: 251 SEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDP 285
>gi|210608535|ref|ZP_03287908.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787]
gi|210152986|gb|EEA83992.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787]
Length = 222
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+RV + + + VK GG + +EGLR F+P ++L ++ +L++ + + +
Sbjct: 24 WNRVTEYMEQGTVLPVKVEGIVNGGAIAMVEGLRGFIPASKL--SLSYIEDLEDYLLKDI 81
Query: 347 YVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIG 396
VQ+ +++ N L+LS RE ++ G++L GTV+ + YGA IR+
Sbjct: 82 EVQVIDVDQANNRLVLSARELLKEKERKEKEKLLASVEVGSVLTGTVETLQTYGAFIRL- 140
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
++ SGL+H+S + R+ + +D+L GE V V V+ + KISLSI L
Sbjct: 141 ENGLSGLVHVSQICEKRIKTPADVLKTGEEVNVKVI-GIKDGKISLSIKAL 190
>gi|453363488|dbj|GAC80781.1| 30S ribosomal protein S1 [Gordonia malaquae NBRC 108250]
Length = 491
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + ++K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW LN L++G + +
Sbjct: 155 MRRVRDLQPYIGKEVEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLQKGQVRK 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 214 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRER 271
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 272 VSLSLKATQEDP 283
>gi|321311760|ref|YP_004204047.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
gi|384175896|ref|YP_005557281.1| hypothetical protein I33_2350 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386758871|ref|YP_006232087.1| 30S ribosomal protein S1 [Bacillus sp. JS]
gi|428279757|ref|YP_005561492.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
gi|430758469|ref|YP_007209177.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|291484714|dbj|BAI85789.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
gi|320018034|gb|ADV93020.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
gi|349595120|gb|AEP91307.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|384932153|gb|AFI28831.1| 30S ribosomal protein S1 [Bacillus sp. JS]
gi|430022989|gb|AGA23595.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 382
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 18/184 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIAD 446
SI D
Sbjct: 254 SIKD 257
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ +++ Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS ++
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKDT 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + ++ G +LEGTV+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEETP 348
>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
43021]
Length = 500
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +IK + + E GGL
Sbjct: 82 VVEVGEHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGIVTGTVIEVVKGGL 141
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---- 368
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 142 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 197
Query: 369 ------ATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 198 QSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 255
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 256 EVGQEVTVEVLDVDMERERVSLSLKATQEDP 286
>gi|376315951|emb|CCF99356.1| 30S ribosomal protein S1 [uncultured Cytophagia bacterium]
Length = 670
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 105/201 (52%), Gaps = 21/201 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT-GGLLTRIEGLRAFLPKAELL 329
+G+ ++S + AW +V ++ + E I F + T GGL+ + G+ AFLP +++
Sbjct: 182 TGQLVVSHKTARMHRAWQKVNEVLETGEII-TGFVKCRTKGGLIADVFGIEAFLPGSQI- 239
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLL 379
V + + VG+ M ++ +IN + ++++S E++ L +G +L
Sbjct: 240 -DVKPIRDYDQYVGKNMEFKVVKINNEFKNVVVSHKALIEAELEEQKKQIMSGLEKGQVL 298
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EGTVK I YG I +G + GL+HI+++S RV +++ E++ V+++ F D
Sbjct: 299 EGTVKNITSYGVFIDLGGVD--GLIHITDLSWGRVNHPEEVVTLDEKINVVILD--FDDD 354
Query: 439 --KISLSIADLESEPGLFVSD 457
+I+L + L S P ++D
Sbjct: 355 KKRIALGLKQLNSHPWEALAD 375
>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1 [Mycobacterium gilvum Spyr1]
gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium gilvum Spyr1]
Length = 481
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|16079345|ref|NP_390169.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
168]
gi|221310206|ref|ZP_03592053.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
168]
gi|221314529|ref|ZP_03596334.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319451|ref|ZP_03600745.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323727|ref|ZP_03605021.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SMY]
gi|402776548|ref|YP_006630492.1| RNA degradation presenting factor [Bacillus subtilis QB928]
gi|418032549|ref|ZP_12671032.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|452915853|ref|ZP_21964479.1| hypothetical protein BS732_2804 [Bacillus subtilis MB73/2]
gi|585942|sp|P38494.1|RS1H_BACSU RecName: Full=30S ribosomal protein S1 homolog
gi|533106|gb|AAA85150.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative
[Bacillus subtilis subsp. subtilis str. 168]
gi|2634706|emb|CAB14204.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus subtilis subsp. subtilis str. 168]
gi|351471412|gb|EHA31533.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481729|gb|AFQ58238.1| RNA degradation presenting factor (ribosomal protein S1 like
protein) [Bacillus subtilis QB928]
gi|407959531|dbj|BAM52771.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7613]
gi|407965107|dbj|BAM58346.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7003]
gi|452116201|gb|EME06597.1| hypothetical protein BS732_2804 [Bacillus subtilis MB73/2]
Length = 382
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 18/184 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIAD 446
SI D
Sbjct: 254 SIKD 257
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ +++ Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS ++
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKDT 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W + ++ G +LEGTV+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEETP 348
>gi|284044326|ref|YP_003394666.1| RNA binding S1 domain-containing protein [Conexibacter woesei DSM
14684]
gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
Length = 529
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 255 VETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
VE G + A VL + GR +LS +R + AW R+ + EP++ E GGL+
Sbjct: 85 VEMGEEVDALVLTKEDQDGRLILSKKRARFEKAWRRIEAAAESGEPVDGTVIEVVKGGLI 144
Query: 314 TRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-- 371
+ G+R FLP + L + L E +G+ + ++ +N N+++LS R
Sbjct: 145 IDL-GVRGFLPAS--LVDIRRVPHLDEYLGQTIECRVIELNRSRNNVVLSRRAVLEEQRR 201
Query: 372 --------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
L+ G ++EGT+ I +GA + + GL+HIS +S + V S++L+
Sbjct: 202 EDRERILDRLQPGMIVEGTISNIVDFGAFVDL--DGIDGLIHISELSWSHVNHPSEILSI 259
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEPGLFVSD 457
G+ V V V+ +ISL + + +P V D
Sbjct: 260 GDTVSVKVLDIDRDRQRISLGLKQTQEDPWQRVVD 294
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLIL----SER 365
G ++G+ + +EL S VN+ +E+ +G + V++ I+ D + L ++
Sbjct: 228 GAFVDLDGIDGLIHISELSWSHVNHPSEIL-SIGDTVSVKVLDIDRDRQRISLGLKQTQE 286
Query: 366 EAWA----TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
+ W T N+ G LEG V K+ +GA + I D GL+HIS +++ V + +++
Sbjct: 287 DPWQRVVDTYNV--GDELEGRVTKVVTFGAFVEILD-GVEGLVHISELAQHHVENPREII 343
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ VKV +++ ++SLSI +E +
Sbjct: 344 QPNDEVKVKILEIDSERRRLSLSIKRVEGQ 373
>gi|51209897|ref|YP_063561.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
gi|50657651|gb|AAT79636.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
Length = 265
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS +RL AW R++Q++ + V +N GG+LT +EGL +F+P++ L+
Sbjct: 94 LLSIKRLDYIKAWKRIKQLETEEIILHVPLINFNKGGILTALEGLHSFIPRSHLIL---- 149
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN---LREGTLLEGTVKKIYPYGA 391
F + V + +I ++E TN +ILS + A L LR G L+ G + + YG
Sbjct: 150 FNAYESMVRSYLPCKILLVDEKTNKIILSHKLALLYLYSDLLRVGRLVYGQIIQFKQYGI 209
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
+ I LLHIS + + ++ + G ++KV ++
Sbjct: 210 FLNI--YGIPALLHISEIGYEYIDNIDCVFAIGHKIKVKII 248
>gi|304393050|ref|ZP_07374979.1| ribosomal protein S1 [Ahrensia sp. R2A130]
gi|303294815|gb|EFL89186.1| ribosomal protein S1 [Ahrensia sp. R2A130]
Length = 567
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 23/226 (10%)
Query: 242 IAMSGGSGPGRP----VVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLN 297
+A+ S PG+P V +T V V G +LS + R+ +W ++ + +
Sbjct: 54 VALKEFSLPGQPSTLKVGDTVEVYLERV--ENAMGEAVLSRDKARREESWIKLEKKFEAE 111
Query: 298 EPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINED 356
E +E + GG ++G AFLP++++ R V + T L + QI +++
Sbjct: 112 EKVEGQIFNQVKGGFTVDLDGATAFLPRSQVDIRPVRDVTPL---MNTPQPFQILKMDRR 168
Query: 357 TNDLILS----------EREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHI 406
++++S E+ + NL EG ++EG VK I YGA + +G + GLLH+
Sbjct: 169 RGNIVVSRRAILEETRAEQRSEIVQNLEEGQIVEGVVKNITDYGAFVDLGGID--GLLHV 226
Query: 407 SNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
++M+ RV +++L GE VKV +++ + +ISL + LES+P
Sbjct: 227 TDMAWRRVNHPTEILQIGETVKVQIIRVNQETHRISLGMKQLESDP 272
>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S R+ + A+ ++++ + + IE K T GGLL + G R FLP A
Sbjct: 81 GDKENGDFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-GTRGFLP-A 138
Query: 327 ELLSRVNNF-TELKEKVGRRMYVQITRINEDTNDLILSERE--------AWATL--NLRE 375
L+S N F ++LK +G+ + V+IT I+ N LILS +E A+ + L
Sbjct: 139 SLIS--NRFVSDLKPYIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVV 196
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++EG V ++ +G+ + IG + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 197 GDVVEGRVSRLTDFGSFVDIGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVI-GI 253
Query: 436 FPDKISLSIADLESEPGLF 454
D+ +S++ ++EP F
Sbjct: 254 DNDRHRISLSIKQTEPSPF 272
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E + + G I G+ + +E+
Sbjct: 170 RLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDIGGVDGLVHISEIS 229
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA------WATLNLREGTLLEGTV 383
+ + KVG+ + V++ I+ D + + LS ++ AT +L EG ++EG V
Sbjct: 230 YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEV 289
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--IS 441
K + +GA + + D + GL+H+S ++ V SD+L G+ VKV V+ ++ P K IS
Sbjct: 290 KSLTNFGAFVEVADGIQ-GLVHVSEIAYKHVDKPSDVLKVGQDVKVKVL-NIDPSKRRIS 347
Query: 442 LSIADLESEPGLFVSDK 458
LSI ++ E +D+
Sbjct: 348 LSIKQVDPENASSSNDR 364
>gi|423625417|ref|ZP_17601195.1| ribosomal protein S1 [Bacillus cereus VD148]
gi|401255097|gb|EJR61322.1| ribosomal protein S1 [Bacillus cereus VD148]
Length = 382
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW ++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F++ K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFSDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
>gi|295116041|emb|CBL36888.1| Ribosomal protein S1 [butyrate-producing bacterium SM4/1]
Length = 311
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 28/264 (10%)
Query: 198 GTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVET 257
G +LT V+ + D + ++ DLK AE + R + DD M G + +
Sbjct: 38 GDILTGTVIGVTDSQ---VIVDLKYYAEGIIRRED---ITDDPDYNMQEEIHVGDEI--S 89
Query: 258 GTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
GTV+ + G LLS + + W + ++ + + VK E GG+ +E
Sbjct: 90 GTVIKTD----DGEGNILLSRKSANDTLVWEKFERMLEERTVVPVKVAEVVNGGVTAYLE 145
Query: 318 GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE- 375
G+R F+P ++L S V N L E VG+ + V + + +D L+LS RE E
Sbjct: 146 GVRGFIPASKLAASYVEN---LDEWVGKTVEVTVITVEKDRKKLVLSGREVAREKERAEK 202
Query: 376 ---------GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
G ++EGTV + YGA + + ++ SGL+HIS +S R+ +L EG+
Sbjct: 203 RKKIEKCEVGAVMEGTVDTLKDYGAFVTL-ENGLSGLVHISRISSQRIKHPGVVLKEGQT 261
Query: 427 VKVLVVKSMFPDKISLSIADLESE 450
VKV ++ + KISLS+ D E E
Sbjct: 262 VKVKII-GIKDGKISLSMKDAEPE 284
>gi|375088357|ref|ZP_09734697.1| ribosomal protein S1 [Dolosigranulum pigrum ATCC 51524]
gi|374562395|gb|EHR33725.1| ribosomal protein S1 [Dolosigranulum pigrum ATCC 51524]
Length = 415
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 52/317 (16%)
Query: 147 VSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVVVS-GNENKLDVNVGADLLGTMLTKEV 205
+S E+ +++ D+V + + KPGD V V++ +E + V +G+ G +
Sbjct: 1 MSEENKNLEQNASMDQVMADVVDVKPGDLVTAEVLTIDSEKNVVVGLGSGQEG------I 54
Query: 206 LPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEV 265
+PL + D+ ++ A+E V D+I + V+ +V
Sbjct: 55 VPLRELSTDY----VEDPADEVEV---------GDSIEL---------------VVLKDV 86
Query: 266 LGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPK 325
+ G +LS +R+ ++ W +++ NEPIE + + GG+ + G+R F+P
Sbjct: 87 KDKEQGGF-ILSKKRVDQRKVWEELQEKADNNEPIEAQVSRVVKGGVTVDL-GVRGFVPA 144
Query: 326 AELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREA---WATLNLRE 375
+ L N ++L E G +I I+ LILS E EA A L E
Sbjct: 145 SHL--DTNFVSDLSEFEGNTYEFKILEIDPSDRQLILSRKALLQKEEEAERQEALEALEE 202
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
G+ ++GTV ++ +GA I +G + GL+H+S ++ R+ D L +GE ++V V+
Sbjct: 203 GSTVKGTVVRLTNFGAFINLGGVD--GLVHVSEIAHERINHPKDRLKKGEEIEVKVLSVD 260
Query: 435 MFPDKISLSIADLESEP 451
+ +++SLSI +L + P
Sbjct: 261 VERERVSLSIKELIAGP 277
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Query: 271 SGRPLLSTRR--LFRKMAWHRVRQIKQLNEPIEVKFT--EWNTGGLLTRIEGLRAFLPKA 326
S R L+ +R+ L ++ R ++ L E VK T G + G+ + +
Sbjct: 173 SDRQLILSRKALLQKEEEAERQEALEALEEGSTVKGTVVRLTNFGAFINLGGVDGLVHVS 232
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----AWATLN--LREGTLLE 380
E+ N + + K G + V++ ++ + + LS +E W + + G+ +
Sbjct: 233 EIAHERINHPKDRLKKGEEIEVKVLSVDVERERVSLSIKELIAGPWDNVEEEFKAGSTVT 292
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK+I +GA + + GL+HIS ++ V + ++L GE V+V ++ +
Sbjct: 293 GLVKRITDFGAFVEL-KPGVEGLVHISELAHKHVETPHEVLEAGEEVEVKILDVDGDRQR 351
Query: 440 ISLSIADLESEPG 452
+SLS+ L+ P
Sbjct: 352 VSLSVKALKEAPA 364
>gi|319954394|ref|YP_004165661.1| 30S ribosomal protein S1 [Cellulophaga algicola DSM 14237]
gi|319423054|gb|ADV50163.1| SSU ribosomal protein S1P [Cellulophaga algicola DSM 14237]
Length = 606
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 21/202 (10%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT-GGLLTRIEGLRAFLPKAELL 329
SG+ +LS R+ MAW RV E I F + T GG++ + G+ AFLP +++
Sbjct: 121 SGQLVLSHRKARTIMAWDRVNAAHD-KEEIVNGFVKCRTKGGMIVDVFGIEAFLPGSQI- 178
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLL 379
V + + VG+ M ++ +IN + ++++S E++ L +G +L
Sbjct: 179 -DVKPIRDYDQYVGKTMEFKVVKINHEFKNVVVSHKALIEADIEEQKKEIIGQLEKGQVL 237
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EG VK I YG I +G + GL+HI+++S +R+ ++++ +++ V+++ F D
Sbjct: 238 EGVVKNITSYGVFIDLGGVD--GLVHITDLSWSRINHPNEVVELDQKLNVVILD--FDDN 293
Query: 439 --KISLSIADLESEPGLFVSDK 458
+I L + LE P +SD+
Sbjct: 294 KSRIQLGLKQLEKHPWEALSDE 315
>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 480
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|308174080|ref|YP_003920785.1| RNA degradation presenting factor [Bacillus amyloliquefaciens DSM
7]
gi|384164854|ref|YP_005546233.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
gi|307606944|emb|CBI43315.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens DSM 7]
gi|328912409|gb|AEB64005.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
Length = 382
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWATLN-----LREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS E+E A + L G++LEG V
Sbjct: 139 DFTDYK---GKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRK---MAWHRVRQIKQLNEPIEVKFTEWN 308
F + G+TLS R +LS R + K H Q ++ +E K
Sbjct: 140 FTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQDVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + +++G +LEG V+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKQGDVLEGKVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNESEERISLSMRELEEAP 348
>gi|406978540|gb|EKE00487.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 367
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 29/226 (12%)
Query: 259 TVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEG 318
TVL + G ++S RR + WH + + +E E+N GGLL G
Sbjct: 77 TVLAQVIQAENDQGYIVMSLRRAEKDKRWHDLEVAYKDGSVLEATIIEYNKGGLLADCFG 136
Query: 319 LRAFLPKAELLSRVN-----------NFTELKEKV----GRRMYVQITRINEDTNDLILS 363
+R F+P + L RV+ + ELK + G+ + V+I +++ N ++LS
Sbjct: 137 MRGFIPLSH-LDRVHFANDIAKFAAGSEAELKSSLKVLSGKVLKVKIIELDKVKNRMVLS 195
Query: 364 EREAWATLN----------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
E++A +T + ++E +LEG V I P+G + + GL+HIS ++ +
Sbjct: 196 EKDALSTYSESARQEKLSTIKENDILEGIVTGIMPFGVFVDL--DGVEGLVHISEIAWEK 253
Query: 414 VTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
V S GE VKV V+ K++LS+ L + P V D+
Sbjct: 254 VNHPSSYFKVGESVKVKVLGVDDGSGKLALSVKRLSTNPWDNVEDR 299
>gi|423332744|ref|ZP_17310526.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
gi|337727862|emb|CCC02950.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
Length = 416
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%)
Query: 256 ETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTR 315
E V+ +++ +G LLS RRL + W +++ E I K T+ GGL+
Sbjct: 75 ELDLVVISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAKVTQAVKGGLVVD 134
Query: 316 IEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN-- 372
G+R F+P + + V + + K G+ + +I I N LILS +E +
Sbjct: 135 A-GVRGFVPASMITDHYVEDLNQFK---GQELEFKIVEIEPSENRLILSHKEIIQAQHEK 190
Query: 373 --------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
L+ G ++EG V ++ +GA I +G + GL+H+S +S V SD+L G
Sbjct: 191 AAEKVFAELQPGDVIEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLTAG 248
Query: 425 ERVKVLVVKSMFPDKISLSIADLESEPG 452
+ VKV V+ S+ P++ +S++ ++ PG
Sbjct: 249 QDVKVKVL-SVDPERERISLSIKQTLPG 275
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
++L GTVK++ +GA + + GL+HIS +S + + +D+L G+ V+V V+ S+
Sbjct: 288 SVLTGTVKRLTSFGAFVEVF-PGVEGLVHISQISHKHIATPADVLKPGQEVQVKVI-SVD 345
Query: 437 PD--KISLSIADLESEP 451
P+ ++ LS+ LE P
Sbjct: 346 PEHQRLGLSMKALEERP 362
>gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
Length = 398
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ + ++ + + +E T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ +R ++LK +G++M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISNRY--VSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 199 DTVEGKVSRLTGFGAFVDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVI-GID 255
Query: 437 PD--KISLSIADL------ESEPGLFVSD---KEVHIIFLFILLFNKQYSVWFLVHL 482
D +ISLSI E+ GL D EV + F + LVH+
Sbjct: 256 DDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHV 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT L EG ++EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA I + D + GL+H+S ++ V SD+L G+ VKV V+ S+ P +IS
Sbjct: 291 KTLTSFGAFIEVADGIQ-GLVHVSEIANKHVDKPSDVLKVGQTVKVKVL-SVDPSDRRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|378828407|ref|YP_005191139.1| 30S ribosomal protein S1 [Sinorhizobium fredii HH103]
gi|365181459|emb|CCE98314.1| 30S ribosomal protein S1 [Sinorhizobium fredii HH103]
Length = 568
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGVITAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGSLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWQRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L+ G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILSIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-SIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|336441308|gb|AEI54879.1| 30S ribosomal protein S1 [Mycobacterium immunogenum]
Length = 481
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++ + N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus K02]
gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 414
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 108/192 (56%), Gaps = 24/192 (12%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + + +W ++ + +E K E GGL+ + GLR F+P A ++ R V
Sbjct: 98 VLSKRAVDGEKSWDKLAADMENKTILEAKVAEVVKGGLVVDV-GLRGFVP-ASMVERTFV 155
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
+F++ K GR + +++ ++ + N +ILS++ E A L++ G +L+
Sbjct: 156 EDFSDYK---GRTLRLRVKEMDREKNKVILSQKDVLDEEFEGKKKEVLAKLSV--GQVLD 210
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440
GTV+++ +GA + IG + GL+HIS M+ V S+++ EG++V+V V+K + P+
Sbjct: 211 GTVQRLTQFGAFVDIGGVD--GLVHISEMAWHHVEKPSEVVKEGDKVQVQVLK-VDPENE 267
Query: 441 SLSIADLESEPG 452
+S++ ++PG
Sbjct: 268 RISLSIKATQPG 279
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIR 394
K G ++ VQ+ +++ + + LS + W + R G ++ GTVK++ +GA I
Sbjct: 250 KEGDKVQVQVLKVDPENERISLSIKATQPGPWQQVAGRINTGDIVTGTVKRLVQFGAFIE 309
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
+ GL+HIS ++ V + ++L EGE VKV V+ M PD +ISLSI + E P
Sbjct: 310 VA-PGVEGLVHISQIAHRHVATPQEVLKEGEEVKVKVL-DMNPDEKRISLSIKETEEAPA 367
>gi|365870180|ref|ZP_09409724.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|397679450|ref|YP_006520985.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
gi|414580037|ref|ZP_11437178.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
gi|418248590|ref|ZP_12874976.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
gi|418420385|ref|ZP_12993566.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii
BD]
gi|419712654|ref|ZP_14240111.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
gi|419715386|ref|ZP_14242790.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
gi|420861808|ref|ZP_15325204.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
gi|420868499|ref|ZP_15331881.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
gi|420872943|ref|ZP_15336320.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
gi|420877185|ref|ZP_15340554.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
gi|420883048|ref|ZP_15346411.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
gi|420889059|ref|ZP_15352410.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
gi|420893374|ref|ZP_15356716.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
gi|420898783|ref|ZP_15362118.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
gi|420904588|ref|ZP_15367907.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
gi|420931348|ref|ZP_15394623.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
gi|420937500|ref|ZP_15400769.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
gi|420941605|ref|ZP_15404863.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
gi|420948277|ref|ZP_15411527.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
gi|420951858|ref|ZP_15415102.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
gi|420956028|ref|ZP_15419265.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
gi|420961691|ref|ZP_15424917.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
gi|420971496|ref|ZP_15434691.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
gi|420989221|ref|ZP_15452377.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
gi|420991997|ref|ZP_15455145.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
gi|420997834|ref|ZP_15460972.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
gi|421002273|ref|ZP_15465399.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
gi|421037697|ref|ZP_15500709.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
gi|421043297|ref|ZP_15506298.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
gi|421049238|ref|ZP_15512233.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
gi|336441304|gb|AEI54877.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
gi|336441310|gb|AEI54880.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
gi|353453083|gb|EHC01477.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
gi|363997369|gb|EHM18581.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|364000222|gb|EHM21423.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii
BD]
gi|382937435|gb|EIC61789.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
gi|382943954|gb|EIC68264.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
gi|392067969|gb|EIT93816.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
gi|392071971|gb|EIT97812.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
gi|392076969|gb|EIU02800.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
gi|392088676|gb|EIU14496.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
gi|392090018|gb|EIU15834.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
gi|392090152|gb|EIU15966.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
gi|392101964|gb|EIU27751.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
gi|392106492|gb|EIU32277.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
gi|392107053|gb|EIU32836.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
gi|392119861|gb|EIU45628.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
gi|392136107|gb|EIU61844.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
gi|392143015|gb|EIU68740.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
gi|392151087|gb|EIU76799.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
gi|392155307|gb|EIU81013.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
gi|392157170|gb|EIU82867.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
gi|392168207|gb|EIU93886.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
gi|392183500|gb|EIV09151.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
gi|392186611|gb|EIV12257.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
gi|392187546|gb|EIV13187.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
gi|392197486|gb|EIV23101.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
gi|392229378|gb|EIV54889.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
gi|392237149|gb|EIV62643.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
gi|392241151|gb|EIV66641.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898]
gi|392251725|gb|EIV77197.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
gi|392252927|gb|EIV78395.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
gi|395457715|gb|AFN63378.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
Length = 481
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++ + N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|404418698|ref|ZP_11000465.1| 30S ribosomal protein S1 [Staphylococcus arlettae CVD059]
gi|403489291|gb|EJY94869.1| 30S ribosomal protein S1 [Staphylococcus arlettae CVD059]
Length = 393
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 22/195 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSKRQLETEKSYDYLQEKLDSNETIEAKVTEVVKGGLVVDV-GQRGFIP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSHFD---GQVLELKVEELDPENNRVILSRKAVQEVENAKKKDQLLQSLTEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EG V ++ +GA I IG + GL+H+S ++ V + D++ G+ VKV +KS+ D
Sbjct: 197 IEGKVARLTNFGAFIDIGGVD--GLVHVSELAHEHVKTPEDVVAIGDDVKVK-IKSIDKD 253
Query: 439 --KISLSIADLESEP 451
+ISLSI D P
Sbjct: 254 SERISLSIKDTLPSP 268
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 300 IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTND 359
IE K G I G+ + +EL E +G + V+I I++D+
Sbjct: 197 IEGKVARLTNFGAFIDIGGVDGLVHVSELAHEHVKTPEDVVAIGDDVKVKIKSIDKDSER 256
Query: 360 LILSEREAWATL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
+ LS ++ + EG ++EG V ++ +GA + I + GL+HIS +S
Sbjct: 257 ISLSIKDTLPSPFESIRGEFNEGDIIEGKVVRLTSFGAFVEI-KAGVQGLVHISEISHKH 315
Query: 414 VTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ + ++L G+ V V V+ + ++ISLSI
Sbjct: 316 IGTPGEVLEAGDIVSVKVLGVDVENERISLSI 347
>gi|52080799|ref|YP_079590.1| 30S ribosomal protein S1 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645244|ref|ZP_07999477.1| YpfD protein [Bacillus sp. BT1B_CT2]
gi|404489681|ref|YP_006713787.1| 30S ribosomal protein S1 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682764|ref|ZP_17657603.1| 30S ribosomal protein S1 [Bacillus licheniformis WX-02]
gi|52004010|gb|AAU23952.1| Nucleic acid-binding protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348671|gb|AAU41305.1| 30S ribosomal protein S1-like protein [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|317393053|gb|EFV73847.1| YpfD protein [Bacillus sp. BT1B_CT2]
gi|383439538|gb|EID47313.1| 30S ribosomal protein S1 [Bacillus licheniformis WX-02]
Length = 382
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFESKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS ER+ L G +LEG V
Sbjct: 139 DFTDYK---GKTLTLIVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQLNEP---IEVKFTEWN 308
F + G+TL+ R +LS R + K R ++ Q E +E K
Sbjct: 140 FTDYKGKTLTLIVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQDVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + ++ G +L+G V+++ +GA + + GL+HIS +S + + ++L
Sbjct: 259 LPGPWSNIGEKVKPGDVLDGKVQRLVSFGAFVEVL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLE 448
EG+ VKV V+ + ++ISLS+ +LE
Sbjct: 318 EEGQDVKVKVLDVNEEEERISLSMKELE 345
>gi|403511314|ref|YP_006642952.1| S1 RNA binding domain protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802540|gb|AFR09950.1| S1 RNA binding domain protein [Nocardiopsis alba ATCC BAA-2165]
Length = 497
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV G + A VL + GR +LS +R + AW + +IK+ + + E
Sbjct: 78 PGE-VVAVGDQVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVV 136
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 137 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAW 192
Query: 369 ----------ATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
LN L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 193 LEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 250
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ M +++SLS+ + +P
Sbjct: 251 SEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDP 285
>gi|336441302|gb|AEI54876.1| 30S ribosomal protein S1 [Mycobacterium franklinii]
Length = 481
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++ + N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
gi|420909888|ref|ZP_15373201.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
gi|420916343|ref|ZP_15379647.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
gi|420920887|ref|ZP_15384184.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
gi|420927169|ref|ZP_15390451.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
gi|420966669|ref|ZP_15429874.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
gi|420977508|ref|ZP_15440687.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
gi|420982889|ref|ZP_15446058.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
gi|421007295|ref|ZP_15470407.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
gi|421012807|ref|ZP_15475894.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
gi|421017716|ref|ZP_15480776.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
gi|421023271|ref|ZP_15486318.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
gi|421029448|ref|ZP_15492482.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
gi|421033301|ref|ZP_15496323.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
gi|336441300|gb|AEI54875.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
gi|392120483|gb|EIU46249.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
gi|392122262|gb|EIU48027.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
gi|392130723|gb|EIU56469.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
gi|392134402|gb|EIU60143.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
gi|392166708|gb|EIU92391.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
gi|392172369|gb|EIU98040.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
gi|392200224|gb|EIV25831.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
gi|392205347|gb|EIV30931.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
gi|392210502|gb|EIV36069.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
gi|392214240|gb|EIV39792.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
gi|392228953|gb|EIV54465.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
gi|392229842|gb|EIV55352.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
gi|392252110|gb|EIV77579.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
Length = 481
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++ + N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|423719444|ref|ZP_17693626.1| RNA binding S1 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383367536|gb|EID44813.1| RNA binding S1 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 387
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS- 330
G +LS + + + AW + + E EV + GGL+ + G+R F+P A L+
Sbjct: 82 GLLILSKKAVDAERAWEELERRFASGETFEVVVKDIVKGGLVADV-GVRGFIP-ASLVEP 139
Query: 331 -RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F++ K G+ + V++ ++ + N +ILS R A L G +L
Sbjct: 140 HYVEDFSDYK---GKTLAVKVVELDREKNRVILSHRAVVEEEQERQRKEALSRLETGQVL 196
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EG V++I +G + +G + GL+HIS +S TRV SD++ EGE VKV V+ +
Sbjct: 197 EGIVRRITDFGVFVDVGGFD--GLVHISQLSHTRVAHPSDVVQEGETVKVKVLSVDEENG 254
Query: 439 KISLSIADLESEPGLFVSDK 458
++SLSI + P +++K
Sbjct: 255 RVSLSIKEALPSPWEGIAEK 274
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G + V++ ++E+ + LS +EA W + + G ++ G VK++ P+GA + I
Sbjct: 239 GETVKVKVLSVDEENGRVSLSIKEALPSPWEGIAEKIAPGDIVTGKVKRLVPFGAFVEIF 298
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
GL+HIS +S R+ + ++L EGE VK V+ S +ISLSI DL
Sbjct: 299 -PGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAERRISLSIRDL 349
>gi|336234889|ref|YP_004587505.1| RNA binding S1 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|335361744|gb|AEH47424.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 387
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS- 330
G +LS + + + AW + + E EV + GGL+ + G+R F+P A L+
Sbjct: 82 GLLILSKKAVDAERAWEELERRFASGETFEVIVKDIVKGGLVADV-GVRGFIP-ASLVEP 139
Query: 331 -RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F++ K G+ + V++ ++ + N +ILS R A L G +L
Sbjct: 140 HYVEDFSDYK---GKTLAVKVVELDREKNRVILSHRAVVEEEQERQRKEALSRLETGQVL 196
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EG V++I +G + +G + GL+HIS +S TRV SD++ EGE VKV V+ +
Sbjct: 197 EGIVRRITDFGVFVDVGGFD--GLVHISQLSHTRVAHPSDVVQEGETVKVKVLSVDEENG 254
Query: 439 KISLSIADLESEPGLFVSDK 458
++SLSI + P +++K
Sbjct: 255 RVSLSIKEALPSPWEGIAEK 274
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G + V++ ++E+ + LS +EA W + + G ++ G VK++ P+GA + I
Sbjct: 239 GETVKVKVLSVDEENGRVSLSIKEALPSPWEGIAEKIAPGDIVTGKVKRLVPFGAFVEIF 298
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
GL+HIS +S R+ + ++L EGE VK V+ S +ISLSI DL
Sbjct: 299 -PGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAERRISLSIRDL 349
>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
Length = 495
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 29/251 (11%)
Query: 214 DFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSG 272
D +L D+ E ++ ++ I D D PG VVE G + A VL + G
Sbjct: 52 DEVLVDIGYKTEGVVLSRELSIKHDVD---------PGE-VVEVGDEIEALVLQKEDKEG 101
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
R +LS +R + AW + +IK+ N + E GGL+ I GLR FLP + L +
Sbjct: 102 RLMLSKKRAQYERAWGDIEKIKEDNGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVEM 158
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-----------LNLREGTLLEG 381
+L +G+++ +I ++++ N+++LS R AW L++G + G
Sbjct: 159 RRVRDLAPYIGQQVEAKIIELDKNRNNVVLS-RRAWLEQTQSAVRHDFLQTLQKGQVRPG 217
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + +++ G+ V V V+ M +++
Sbjct: 218 VVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERV 275
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 276 SLSLKATQEDP 286
>gi|365157688|ref|ZP_09353938.1| ribosomal protein S1 [Bacillus smithii 7_3_47FAA]
gi|363623000|gb|EHL74136.1| ribosomal protein S1 [Bacillus smithii 7_3_47FAA]
Length = 378
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 22/191 (11%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS--RV 332
+LS R++ + AW +R+ + E E + E GGL+ + G+R F+P A L+ V
Sbjct: 80 VLSKRKVDAEKAWDLMRKRFENGEIFEAEVKEVVKGGLVVDL-GVRGFVP-ASLVEDYYV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGT 382
+F + K G+ + +I ++E+ N LILS R ++ G +LEG
Sbjct: 138 EDFEDYK---GKTLTFKIVELDEEKNRLILSHRAVVEEEKQKAKKKLLDEIQPGDVLEGK 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V+++ +GA + IG + GL+HIS +S V SD++ EGE VKV V+ ++IS
Sbjct: 195 VQRLTDFGAFVDIGGVD--GLVHISQLSHEHVEKPSDVVKEGEIVKVKVLSVDRDNERIS 252
Query: 442 LSIADLESEPG 452
LSI E+ PG
Sbjct: 253 LSIK--ETIPG 261
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIR 394
K G + V++ ++ D + LS +E W + + G++L+GTVK++ YGA +
Sbjct: 232 KEGEIVKVKVLSVDRDNERISLSIKETIPGPWENIAEKAPVGSVLKGTVKRLVSYGAFVE 291
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEP 451
+ GL+HIS +S + + ++L+EG+ V+V V+ +K +SLSI +LE+EP
Sbjct: 292 VF-PGVEGLVHISQISHKHIGTPHEVLSEGQEVEVKVLDVNEKEKRLSLSIKELENEP 348
>gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
Length = 571
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 18/199 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS + + W + + + + IE K GG++ I G++AFLP +++ L
Sbjct: 89 GNLVLSKEKADKMKIWEELETLHKEEKSIEGKIISRIKGGMMVDI-GVKAFLPGSQIDLH 147
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS---------EREAWATLN-LREGTLLE 380
V + L VG+ ++I +IN ++++S +R TL+ L+EG L++
Sbjct: 148 PVRDLDGL---VGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTLSTLKEGQLIQ 204
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
GTVK I YGA I +G + GLLHI++MS RV S+L ++V+V V+K +
Sbjct: 205 GTVKNITDYGAFIDLGGID--GLLHITDMSWGRVGHPSELFQVSDKVEVTVLKYDRETGR 262
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL + ++P V+ K
Sbjct: 263 ISLGLKQKSADPWTGVAAK 281
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVK- 433
GT +EG VK + +GA + + + GL+HIS+MS T+ + S+L +G++V +V++
Sbjct: 372 GTRIEGKVKSLTDFGAFVGL-EEGIDGLIHISDMSWTKHIKHPSELFKKGQKVDAVVIRI 430
Query: 434 SMFPDKISLSIADLESEP 451
+++SL L +P
Sbjct: 431 DKEKERLSLGYKQLSRDP 448
>gi|390444156|ref|ZP_10231938.1| RNA binding S1 domain-containing protein [Nitritalea halalkaliphila
LW7]
gi|389665165|gb|EIM76640.1| RNA binding S1 domain-containing protein [Nitritalea halalkaliphila
LW7]
Length = 584
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW + + + IE GGL+ I G+ AFLP +++
Sbjct: 99 GQLVLSRKKARMVRAWQDIESALEDDNVIEGLVKRRTKGGLIVDIYGVEAFLPGSQI--D 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEG 381
V + VG++M V++ +IN +++++S + +A NL +G +LEG
Sbjct: 157 VKPIRDFDVYVGKKMEVKVVKINHANDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEG 216
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--- 438
+K + +G I +G + GLLHI+++S R+ ++LN ++V+++V+ F D
Sbjct: 217 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLNLDDKVQIVVLD--FDDDKK 272
Query: 439 KISLSIADLESEP 451
+ISL + L + P
Sbjct: 273 RISLGMKQLTAHP 285
>gi|389879078|ref|YP_006372643.1| 30S ribosomal protein S1 [Tistrella mobilis KA081020-065]
gi|388529862|gb|AFK55059.1| Ribosomal protein S1 [Tistrella mobilis KA081020-065]
Length = 574
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 33/272 (12%)
Query: 208 LYDKEMDFLLCD--LKKDA-EEFMVRGKMGIVKDDDAIAMSGGSGPGR--------PVVE 256
+ D+ + LL D + +D E +V+G++ ++ D + G GR P E
Sbjct: 13 MSDENFEALLADSFIAQDGLEGSVVKGRITAIEGDQVLIDVGLKSDGRIALKEFAQPGQE 72
Query: 257 TGTVLFAEV---LGR--TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311
T + EV + R G ++S R R+ AW ++ Q + E + GG
Sbjct: 73 TELAVGDEVEVYIDRMENAQGEVVISRERARREEAWTQLEQAFKNAERVNGVIFGRVKGG 132
Query: 312 LLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----- 365
++G AFLP +++ R V + T L +G QI ++++ ++++S R
Sbjct: 133 CTVDLQGAVAFLPGSQIDIRPVRDITPL---IGTTQPFQILKMDKRRGNIVVSRRAVLEE 189
Query: 366 ---EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
EA L NL+EG +LEG VK I YGA + +G + GLLH++++S R+ ++
Sbjct: 190 SRAEARKELIENLKEGQILEGVVKNITDYGAFVDLGGVD--GLLHVTDISWRRINHPTEA 247
Query: 421 LNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
L G+ V+V+V + + +ISL + LE++P
Sbjct: 248 LTIGQSVRVVVTRFNRETQRISLGMKQLEADP 279
>gi|336441306|gb|AEI54878.1| 30S ribosomal protein S1 [Mycobacterium chelonae]
Length = 481
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++ + N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|325660733|ref|ZP_08149361.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472807|gb|EGC76017.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 222
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
WH V + + + VK GG + IEGLR F+P ++L ++ +L+ + + +
Sbjct: 24 WHIVSKYMEQQTDLPVKIEGIVNGGAIAYIEGLRGFIPASKL--SLSYIEDLETYLLKEI 81
Query: 347 YVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V++ I+ N L+LS RE A + G++L GTV + YGA I +
Sbjct: 82 KVRVIDIDPAENRLVLSAREILKEEQAAERAKKVQEIPVGSVLSGTVDSLQSYGAFILL- 140
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444
++ SGL+H+S + R+ S +D+L GE V+V V+ + KISLS+
Sbjct: 141 ENGLSGLVHVSQICEKRIKSPADVLKTGEEVQVKVI-GIKDGKISLSM 187
>gi|402703461|ref|ZP_10851440.1| 30S ribosomal protein S1 [Rickettsia helvetica C9P9]
Length = 568
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 31/257 (12%)
Query: 218 CDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-------PVVETGT---VLFAEVLG 267
D+ E+ +V+G++ +K+D I G GR + E G V ++ G
Sbjct: 31 VDISHIKEKTVVKGQVIEIKNDMIIVDVGLKNEGRIPKSEFLALPEVGDIVEVFIEKIEG 90
Query: 268 RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
R +GR +LS + ++ W ++ + E ++ GG + G+ AFLP ++
Sbjct: 91 R--NGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQ 148
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGT 377
+ V +L + + +I +++ ++++S R EA + ++EG
Sbjct: 149 V--DVRPIKDLTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGM 206
Query: 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP 437
+LEGTVK I YGA I +G + GLLH++++S RV S++L ++VKV+V+K F
Sbjct: 207 VLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHPSEVLEFNQKVKVMVIK--FD 262
Query: 438 DK---ISLSIADLESEP 451
+K ISL I L+S P
Sbjct: 263 EKTKRISLGIKQLDSNP 279
>gi|313674969|ref|YP_004052965.1| 30S ribosomal protein S1p [Marivirga tractuosa DSM 4126]
gi|312941667|gb|ADR20857.1| SSU ribosomal protein S1P [Marivirga tractuosa DSM 4126]
Length = 660
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-L 329
+G +LS R+ AW ++++ + IE GGL+ + G+ AFLP +++ +
Sbjct: 104 NGELVLSRRKAKIVGAWDKIQKALDEDLIIEGLVKRRTKGGLIVDVHGVEAFLPGSQIDV 163
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLL 379
+ +F VG++M V++ +IN +++++S + +A NL +G +L
Sbjct: 164 KPIRDFDVF---VGKKMEVKVVKINYSNDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVL 220
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
EG +K + +G I +G + GLLHI+++S R+ ++L E+VKV+V+
Sbjct: 221 EGVIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPEEVLKLDEKVKVVVLDFDEGKK 278
Query: 439 KISLSIADLESEP 451
+ISL + L S P
Sbjct: 279 RISLGMKQLTSHP 291
>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
gi|423420453|ref|ZP_17397542.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
gi|401102362|gb|EJQ10349.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
Length = 382
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|388509420|gb|AFK42776.1| unknown [Medicago truncatula]
Length = 399
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 17/170 (10%)
Query: 307 WNTGGLLTRIEGLRAFLPKAELLSRVNNFTE--------LKEKVGRRMYVQITRINEDTN 358
+N GGLL R + FLP L S V++ E +E +G + V++ ++E+
Sbjct: 124 FNAGGLLVRFYSIMGFLPYPPL-SPVHSCQEPDQTIKERARELIGAILSVKVIIVDEEKR 182
Query: 359 DLILSEREA-W--ATLNLREGTLLEGTVKKIYPYGAQIRI----GDSNRSGLLHISNMSR 411
L+LSE+EA W + ++ G L EG V + YGA + + G + +GL+HIS +S
Sbjct: 183 KLVLSEKEASWFKHSKHINIGGLFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSW 242
Query: 412 TRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKEV 460
V V D L EGE V+V V+ +++LSI LE +P L DK +
Sbjct: 243 DLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDPLLETLDKVI 292
>gi|386867152|ref|YP_006280146.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
gi|385701235|gb|AFI63183.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
Length = 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK+ + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEG 381
+ +L +G+++ ++ ++++ N+++LS R+ L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKVLELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|406903916|gb|EKD45849.1| hypothetical protein ACD_69C00107G0001 [uncultured bacterium]
Length = 585
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 17/193 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G+ +LS + R +W + + + NE ++ TE GG I +R+FLP + + +
Sbjct: 113 TGKTILSREKAKRMESWQALEKAFENNETVKGLVTERVRGGFTVEINKIRSFLPGSLVDT 172
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLL 379
+ T E G+ + +I ++++ N++++S EREA + +L EG+ +
Sbjct: 173 KPVRDTSYIE--GKELEFKIIKVDKKQNNIVVSRRAALMAESTPEREALLS-SLEEGSEV 229
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
G VK + YGA I +G + GLLHI+++S R+ S+LL G+ V+V V+K +
Sbjct: 230 TGVVKNLTDYGAFIDLGGID--GLLHITDISWKRIRHPSELLKLGDEVRVKVLKYDRDKN 287
Query: 439 KISLSIADLESEP 451
++SL + L +P
Sbjct: 288 RVSLGLKQLAEDP 300
>gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
gi|385826005|ref|YP_005862347.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
Length = 400
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ + ++ + + +E T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ +R ++LK +G++M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISNRY--VSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 199 DTVEGKVSRLTGFGAFVDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVI-GID 255
Query: 437 PD--KISLSIADL------ESEPGLFVSD---KEVHIIFLFILLFNKQYSVWFLVHL 482
D +ISLSI E+ GL D EV + F + LVH+
Sbjct: 256 DDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHV 312
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT L EG ++EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA I + D + GL+H+S ++ V SD+L G+ VKV V+ S+ P +IS
Sbjct: 291 KTLTSFGAFIEVADGIQ-GLVHVSEIANKHVDKPSDVLKVGQTVKVKVL-SVDPSDRRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
20162]
Length = 499
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + ++K+ +E ++ E GGL
Sbjct: 84 VVNVGDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGL 143
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 144 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 199
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 200 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 257
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 258 TVGDEVTVEVLDVDLDRERVSLSLKATQEDP 288
>gi|345857528|ref|ZP_08809962.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfosporosinus sp. OT]
gi|344329356|gb|EGW40700.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfosporosinus sp. OT]
Length = 662
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+ + A ++++ + E I+ K E GGL+ + G+R F+P +++
Sbjct: 355 AGHTVLSKRQADEERAEEHLKKLAETKEEIQAKVVEVVKGGLVVDV-GIRGFVPASQV-- 411
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
++ +L + +G+ + +++ + ++LS++ A L+EG ++
Sbjct: 412 QLGYVEDLNQFLGQTLRLRMIEFDPSKRKVVLSQKIILAEEQAIKRKHLLETLKEGDVVT 471
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V+++ +GA + IG + GLLH+S+M+ TRV S++L G+ V+V V+K K
Sbjct: 472 GVVRRMADFGAFVDIGGID--GLLHVSDMAHTRVQHPSEILKTGDEVEVKVLKLDQQTGK 529
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L+ P ++K
Sbjct: 530 LSLGLKQLQESPWAQAAEK 548
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 12/146 (8%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G I G+ L +++ +RV + +E+ K G + V++ ++++ T L L +
Sbjct: 481 GAFVDIGGIDGLLHVSDMAHTRVQHPSEIL-KTGDEVEVKVLKLDQQTGKLSLGLKQLQE 539
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
WA + G+L+ G V ++ +GA I++ D GL+HIS ++ RV V D+L
Sbjct: 540 SPWAQAAEKYPVGSLVNGIVVRVVTFGAFIQLSD-GVDGLVHISQLADHRVNKVEDVLKV 598
Query: 424 GERVKVLVVKSMFPD--KISLSIADL 447
G++V V V++ P+ +ISLSI ++
Sbjct: 599 GDKVSVKVIECK-PEAKRISLSIREV 623
>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194007|ref|YP_005579753.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|384195573|ref|YP_005581318.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
V9]
gi|387820881|ref|YP_006300924.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
B420]
gi|387822557|ref|YP_006302506.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bi-07]
gi|423679541|ref|ZP_17654417.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
01]
gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
V9]
gi|345282866|gb|AEN76720.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|366041185|gb|EHN17689.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
01]
gi|386653582|gb|AFJ16712.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
B420]
gi|386655165|gb|AFJ18294.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
Bi-07]
Length = 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK+ + +E E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGDIEKIKENDGVVEGTVIEAVKGGLIVDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEG 381
+ +L +G+++ ++ ++++ N+++LS R+ L++G + EG
Sbjct: 155 MRRVRDLSPYIGQKIKAKVLELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREG 214
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V I +GA + +G + GL+H+S +S + S+++ G++V V V+ + ++I
Sbjct: 215 VVSSIVNFGAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERI 272
Query: 441 SLSIADLESEP 451
SLS+ + +P
Sbjct: 273 SLSLKATQEDP 283
>gi|429729646|ref|ZP_19264303.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
gi|429149040|gb|EKX92030.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
Length = 491
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV+ G + A VL + GR +LS +R + AW + ++K+ +EP+ E
Sbjct: 74 PGE-VVQVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R AW
Sbjct: 133 KGGLILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQEIEAKIIELDKNRNNVVLS-RRAW 188
Query: 369 ATL-----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + +G V I +GA + +G + GL+H+S +S +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 246
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ + +++SLS+ +P
Sbjct: 247 SEVVAVGDEVTVEVLDVDLDRERVSLSLKATMEDP 281
>gi|423392104|ref|ZP_17369330.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
gi|401637937|gb|EJS55690.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
Length = 382
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|406989937|gb|EKE09646.1| hypothetical protein ACD_16C00130G0051 [uncultured bacterium]
Length = 608
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 19/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS + R+ AW + + + NE +E GG ++G+ AFLP +++
Sbjct: 92 NGETVLSYEKARREAAWKILEKSHEKNEQVEGVIFGRVKGGFTVDLKGVVAFLPGSQVDI 151
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLL 379
R V + + L +G QI +++ ++++S R EA + L L EG +L
Sbjct: 152 RPVRDVSPL---IGVAQPFQILKMDRTRGNIVVSRRAILEETRAEARSELVSRLEEGQIL 208
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EG VK I YGA I +G + GLLH+++++ RV S++L G+ ++V +++ P+
Sbjct: 209 EGVVKNITDYGAFIDLGGVD--GLLHVTDIAWHRVNHPSEVLTVGQPIRVQIIR-FNPEN 265
Query: 439 -KISLSIADLESEP 451
+ISL + LES+P
Sbjct: 266 QRISLGMKQLESDP 279
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAW--ATLNLREGTLLEGTVK 384
RVN+ +E+ VG+ + VQI R N + + L E + W A + + GT ++GTV
Sbjct: 240 RVNHPSEVL-TVGQPIRVQIIRFNPENQRISLGMKQLESDPWTGAEVKYKIGTKVKGTVT 298
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA I + + GL+H++ MS T+
Sbjct: 299 NITDYGAFIEL-EPGVEGLVHVTEMSWTK 326
>gi|373486910|ref|ZP_09577581.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
gi|372010863|gb|EHP11466.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
Length = 585
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
++G LS R + W V + + N + E GGL I G+RAFLP +++
Sbjct: 107 VNGNVRLSRERAEKMKIWDEVEKAFRSNMTVHGVVLEKVKGGLAVDI-GIRAFLPGSQV- 164
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLL 379
V L +G+ +++ ++N +++LS + T+N L EG L+
Sbjct: 165 -DVKPVRNLDPYLGKSYDMKVIKVNRRRGNIVLSRKLFMETINASLKEETLAGLEEGKLV 223
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
EGTVK I YGA I +G + GLLHI++MS R+ S++ G++V+V ++K +
Sbjct: 224 EGTVKNITEYGAFIDLGGVD--GLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTE 281
Query: 439 KISLSIADLESEPGLFVSDK 458
++SL ++P L V ++
Sbjct: 282 RVSLGYKQKFADPWLTVEER 301
>gi|402815226|ref|ZP_10864819.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
gi|402507597|gb|EJW18119.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
Length = 404
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR- 331
R +LS R++ + AW +++ + + EV + GG++ + G+RAF+P A ++ R
Sbjct: 91 RLVLSKRQVDSEQAWDDMQKHFEAQDVFEVTVADVVKGGVVADV-GVRAFIP-ASMVERH 148
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLN-------LREGTLLE 380
V +F++ K GR + V++ I+ + N LILS++ EA N L EG LE
Sbjct: 149 FVEDFSDYK---GRTLRVKVKEIDRENNKLILSQKDVLEAEFEANKIRVMEGLTEGQELE 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-K 439
GTV+++ +GA + +G + GL+H+S ++ V SD+++EG++VKV V+K + K
Sbjct: 206 GTVQRLTQFGAFVDVGGVD--GLVHVSELAWNHVEKPSDVVSEGQKVKVKVLKVDPANGK 263
Query: 440 ISLSIADLESEPG 452
ISLSI ++PG
Sbjct: 264 ISLSIK--ATQPG 274
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 369 ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
A+ N++ G +L G VK++ +GA + + GL+HIS ++ V + ++L +G+ V+
Sbjct: 279 ASSNIKTGDILTGEVKRLVDFGAFVEVA-PGVEGLVHISQIAHRHVATPYEVLKQGQTVQ 337
Query: 429 VLVVK-SMFPDKISLSIADLESEPGL 453
V V+ S ++SLSI + E P +
Sbjct: 338 VKVLDFSPAEKRVSLSIKETEEAPAI 363
>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
ATCC 33806]
gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
ATCC 33806]
gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
Length = 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + ++K+ +E + E GGL
Sbjct: 77 VVEVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEAVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+++ +I +++ N+++LS R AW
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLS-RRAWLEQT 192
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 193 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 250
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+ G+ V V V+ + +++SLS+ + +P
Sbjct: 251 SVGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
carboxydivorans Nor1]
gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
carboxydivorans Nor1]
Length = 655
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 32/269 (11%)
Query: 211 KEMDFLL-CDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPG--------RPVVETGTVL 261
+E D LL D+K +++G++ V+ D+ G G G PV E + +
Sbjct: 273 QEFDQLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAYPVPENASDV 332
Query: 262 FAE-------VLGRTLSGRPL-LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
+E VL P+ LS + +AW +++ Q NE + K T GGL
Sbjct: 333 VSEGDEIDVYVLAPEGDDGPVKLSKVKADNIVAWEKLQAAAQANETVTGKVTAVVKGGLA 392
Query: 314 TRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNL 373
+ G+R F+P +++ V + +L VG+ + + I++ ++LS R+
Sbjct: 393 VSLYGVRGFVPASQVA--VQHVADLTPYVGQTLELLPIEIDQAKQKIVLSRRKVLEQEQQ 450
Query: 374 R----------EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
R EG ++ GTV +I +G + +G + GL+HIS++S RV + ++++N
Sbjct: 451 RRAEELFSRLAEGQIVTGTVSRIADFGVFVDLGGVD--GLIHISDLSWHRVKNPTEVVNI 508
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V+V V K +ISLS+ ++ +P
Sbjct: 509 GDEVQVFVQKVDPKAKRISLSLKRVQRDP 537
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G+ + G+ + ++L RV N TE+ +G + V + +++ + LS +R
Sbjct: 477 GVFVDLGGVDGLIHISDLSWHRVKNPTEVV-NIGDEVQVFVQKVDPKAKRISLSLKRVQR 535
Query: 366 EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W + LREG + G V K+ +GA + + GL+H+S ++ RV S +++
Sbjct: 536 DPWYDVVEGLREGMTVAGKVTKLAKFGAFVEV-KPGVEGLVHLSELADRRVASAQEVVEV 594
Query: 424 GERVKVLVVKSMFPDK-ISLSIADLESE 450
G+ V V ++ +K ISLSIA + +
Sbjct: 595 GQTVTVKILGIDKENKRISLSIAQAQQD 622
>gi|418053089|ref|ZP_12691165.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
gi|353179450|gb|EHB45010.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
Length = 484
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 AVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|226323894|ref|ZP_03799412.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758]
gi|225207443|gb|EEG89797.1| S1 RNA binding domain protein [Coprococcus comes ATCC 27758]
Length = 253
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+ V + ++ + VK GG++ +EGLR F+P + L ++ +L+ + + +
Sbjct: 26 WNVVARYQEEGTNLHVKVEGIVNGGVIAMVEGLRGFIPASRL--SLSYIEDLETYLLKEI 83
Query: 347 YVQITRINEDTNDLILSERE----------AWATLNLREGTLLEGTVKKIYPYGAQIRIG 396
V++ N+ LILS RE A +++ G++++GTV+ + YGA +R+
Sbjct: 84 DVRVIEANQAEGRLILSAREILREQKKAEDAKKLASVQVGSVVKGTVESLQSYGAFVRL- 142
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447
++ SGL+HIS +S R+ S +L+ G+ V V V+ + KISLSI L
Sbjct: 143 ENGLSGLVHISQISTQRIKSADQVLHVGDEVDVKVI-GIKDGKISLSIKAL 192
>gi|119386493|ref|YP_917548.1| 30S ribosomal protein S1 [Paracoccus denitrificans PD1222]
gi|119377088|gb|ABL71852.1| SSU ribosomal protein S1P [Paracoccus denitrificans PD1222]
Length = 571
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +S + R+ AW R+ + E +E GG + G AFLP +++ R
Sbjct: 97 GEASISREKARREEAWDRLEKAYAAEERVEGAIFGRVKGGFTVDLGGAVAFLPGSQVDVR 156
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLLE 380
V + L +G + QI +++ ++++S E+ A NL EG +E
Sbjct: 157 PVRDAGPL---MGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIANLSEGQTVE 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA + +G + GLLH+++M+ RV S++L+ GE VKV VVK + +
Sbjct: 214 GVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHPSEILSIGETVKVQVVKINKDTHR 271
Query: 440 ISLSIADLESEPGLFVSDK 458
ISL + L+++P V K
Sbjct: 272 ISLGMKQLQADPWDTVGSK 290
>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
gi|338204370|ref|YP_004650515.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
gi|336449610|gb|AEI58225.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
Length = 416
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%)
Query: 256 ETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTR 315
E V+ +++ +G LLS RRL + W +++ E I K T+ GGL+
Sbjct: 75 ELDLVVISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAKVTQAVKGGLVVD 134
Query: 316 IEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN-- 372
G+R F+P + + V + + K G+ + +I I N LILS +E +
Sbjct: 135 A-GVRGFVPASMITDHYVEDLNQFK---GQELEFKIVEIEPSENRLILSHKEIIQAQHEK 190
Query: 373 --------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
L+ G ++EG V ++ +GA I +G + GL+H+S +S V SD+L G
Sbjct: 191 AAEKVFAELQPGDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLTAG 248
Query: 425 ERVKVLVVKSMFPDKISLSIADLESEPG 452
+ VKV V+ S+ P++ +S++ ++ PG
Sbjct: 249 QDVKVKVL-SVDPERERISLSIKQTLPG 275
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
++L GTVK++ +GA + + GL+HIS +S + + +D+L G+ V+V V+ ++
Sbjct: 288 SVLTGTVKRLTSFGAFVEVF-PGVEGLVHISQISHKHIATPADVLKPGQEVQVKVI-NVD 345
Query: 437 PD--KISLSIADLESEP 451
P+ ++ LS+ LE P
Sbjct: 346 PEHQRLGLSMKALEERP 362
>gi|239827521|ref|YP_002950145.1| 30S ribosomal protein S1 [Geobacillus sp. WCH70]
gi|239807814|gb|ACS24879.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
Length = 387
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS- 330
G +LS + + AW + + E +V + GGL+ + G+R F+P A L+
Sbjct: 82 GLLILSKKAVDADRAWEELERKFASGETFDVVVKDIVKGGLVADV-GVRGFIP-ASLVEP 139
Query: 331 -RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLL 379
V +F++ K G+ + V++ +N + N +ILS R A L G +L
Sbjct: 140 HYVEDFSDYK---GKTLAVKVVELNREKNRIILSHRAVVEEEQERKHKEALSRLEPGQVL 196
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EGTV+++ +G + +G + GL+HIS +S TRV S+++ EGE VKV V+ +
Sbjct: 197 EGTVRRVTDFGVFVDVGGFD--GLVHISQLSHTRVAHPSEVVKEGETVKVKVLAVDEENG 254
Query: 439 KISLSIADLESEPG 452
++SLSI E+ PG
Sbjct: 255 RVSLSIK--EAMPG 266
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G+ + G + ++L +RV + +E+ K G + V++ ++E+ + LS +EA
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSEVV-KEGETVKVKVLAVDEENGRVSLSIKEAMP 265
Query: 368 --WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + + G ++ G VK++ P+GA + I GL+HIS +S R+ + ++L E
Sbjct: 266 GPWEGIAEKVAPGDIVTGKVKRLVPFGAFVEIF-PGVEGLVHISQISNKRIGTPHEVLKE 324
Query: 424 GERVKVLVVKSMFPD-KISLSIADL 447
GE VK V+ + +ISLS+ +L
Sbjct: 325 GEEVKAKVLDVNEAERRISLSMREL 349
>gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323]
gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
gi|420147301|ref|ZP_14654577.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323]
gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
gi|398401302|gb|EJN54804.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
Length = 399
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ + ++ + + +E T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ +R ++LK +G++M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISNRY--VSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+HIS +S V SD+L G+ VKV V+ +
Sbjct: 199 DTVEGKVSRLTGFGAFVDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVI-GID 255
Query: 437 PD--KISLSIADL------ESEPGLFVSD---KEVHIIFLFILLFNKQYSVWFLVHL 482
D +ISLSI E+ GL D EV + F + LVH+
Sbjct: 256 DDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFVEVADGIQGLVHV 312
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT L EG ++EG V
Sbjct: 231 YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KIS 441
K + +GA + + D + GL+H+S ++ V SD+L G+ VKV V+ S+ P +IS
Sbjct: 291 KTLTSFGAFVEVADGIQ-GLVHVSEIANKHVDKPSDVLKVGQTVKVKVL-SVDPSDRRIS 348
Query: 442 LSI 444
LSI
Sbjct: 349 LSI 351
>gi|444433042|ref|ZP_21228188.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
gi|443886106|dbj|GAC69909.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
Length = 493
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + Q+K+ +E ++ E GGL
Sbjct: 80 VVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKEKDEAVKGTVIEVVKGGL 139
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 140 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 195
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 196 QSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 253
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 254 AVGDEVTVEVLDVDLDRERVSLSLKATQEDP 284
>gi|386319260|ref|YP_006015423.1| 30S ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
Length = 394
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 106/190 (55%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ + NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 83 TGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV-GQRGFIP-ASLIS 140
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F++ + GR + +++ + + N +ILS + A N ++ G +
Sbjct: 141 TDYIEDFSDYE---GRVLELKVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDV 197
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EG V ++ +GA I +G + GL+H+S +S V S ++++ G+ VKV V+S+ D
Sbjct: 198 IEGKVARLTNFGAFIDLGGVD--GLVHVSELSHEHVKSPEEVVSIGDTVKVK-VRSVEQD 254
Query: 439 --KISLSIAD 446
++SLSI D
Sbjct: 255 SERVSLSIKD 264
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 300 IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTND 359
IE K G + G+ + +EL E +G + V++ + +D+
Sbjct: 198 IEGKVARLTNFGAFIDLGGVDGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSER 257
Query: 360 LILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
+ LS ++ + T+ + EG ++EG V ++ +GA + IG S GL+HIS +S
Sbjct: 258 VSLSIKDTLPSPFETIQEKYSEGDIVEGKVMRLASFGAFVEIG-SGLQGLVHISEISHKH 316
Query: 414 VTSVSDLLNEGERVKVLVVKSMFP--DKISLSI 444
+ + ++L G+ V+V ++ + P ++ISLSI
Sbjct: 317 IGTPGEVLEPGQTVQVKIL-GINPEEERISLSI 348
>gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Moorella
thermoacetica ATCC 39073]
gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella
thermoacetica ATCC 39073]
Length = 736
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G P+LS RR R++AW ++ + E I+ + E GGLL + G+R FLP A L+ R
Sbjct: 427 GHPVLSKRRADRRVAWEKLEEHLASGEEIQGEVIEVVKGGLLVDV-GVRGFLP-ASLVER 484
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS---------EREAWATLN-LREGTLLEG 381
+L +G+ + +++ ++ N ++LS E++ AT N L G + +G
Sbjct: 485 -GYVEDLNAYLGQTLRLRVIELDRSKNKVVLSRKAILEEEYEKQRQATWNSLEVGQVRKG 543
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
V+++ +GA + +G + GLLH+S +S RV D L+EG+ ++V ++
Sbjct: 544 IVRRLTNFGAFVDLGGVD--GLLHVSEISWGRVEHPRDALSEGQEIEVKIL 592
>gi|319892466|ref|YP_004149341.1| 30S ribosomal protein S1p [Staphylococcus pseudintermedius
HKU10-03]
gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius
HKU10-03]
Length = 394
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 106/190 (55%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ + NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 83 TGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV-GQRGFIP-ASLIS 140
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F++ + GR + +++ + + N +ILS + A N ++ G +
Sbjct: 141 TDYIEDFSDYE---GRVLELKVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDV 197
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EG V ++ +GA I +G + GL+H+S +S V S ++++ G+ VKV V+S+ D
Sbjct: 198 IEGKVARLTNFGAFIDLGGVD--GLVHVSELSHEHVKSPEEVVSIGDTVKVK-VRSVEQD 254
Query: 439 --KISLSIAD 446
++SLSI D
Sbjct: 255 SERVSLSIKD 264
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 300 IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTND 359
IE K G + G+ + +EL E +G + V++ + +D+
Sbjct: 198 IEGKVARLTNFGAFIDLGGVDGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSER 257
Query: 360 LILSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
+ LS ++ + T+ + EG ++EG V ++ +GA + IG S GL+HIS +S
Sbjct: 258 VSLSIKDTLPSPFETIQEKYSEGDIVEGKVMRLASFGAFVEIG-SGLQGLVHISEISHKH 316
Query: 414 VTSVSDLLNEGERVKVLVVKSMFP--DKISLSI 444
+ + ++L G+ V+V ++ + P ++ISLSI
Sbjct: 317 IGTPGEVLEPGQTVQVKIL-GINPEEERISLSI 348
>gi|169344163|ref|ZP_02865145.1| ribosomal protein S1 family [Clostridium perfringens C str.
JGS1495]
gi|169297621|gb|EDS79721.1| ribosomal protein S1 family [Clostridium perfringens C str.
JGS1495]
Length = 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 39/263 (14%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LLS +R W ++ + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKDAFEKETSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGR- 142
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
L+E VG+ + V++ N+D +++S R W++ ++ G +
Sbjct: 143 -RIENLEELVGKTLEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKALWSS--IKSGEKRK 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + M ++
Sbjct: 200 GKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257
Query: 440 ISLSIADLESEP-----GLFVSD 457
I+LS+ D+ P GL V D
Sbjct: 258 IALSLKDVIKNPWETLEGLKVGD 280
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 30/207 (14%)
Query: 264 EVLGRTL---------SGRPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTE 306
E++G+TL R ++ +RR+ +K W ++ E + K T
Sbjct: 149 ELVGKTLEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKALWSSIKS----GEKRKGKVTR 204
Query: 307 WNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365
G I G+ + +++ SRV+ E+ VG + V ++ ++ D + LS +
Sbjct: 205 LAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDMDRERIALSLK 263
Query: 366 EA----WATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
+ W TL L+ G ++ G V GA + + GL+HIS ++ + SD+
Sbjct: 264 DVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVL-PGIEGLVHISEITDENIAKPSDI 322
Query: 421 LNEGERVKVLVVKSMFPD-KISLSIAD 446
L G+ VKV ++ + K+SLSI D
Sbjct: 323 LELGQEVKVKILNIDDENKKMSLSIKD 349
>gi|154686535|ref|YP_001421696.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens FZB42]
gi|385265263|ref|ZP_10043350.1| 30S ribosomal protein S1 [Bacillus sp. 5B6]
gi|154352386|gb|ABS74465.1| YpfD [Bacillus amyloliquefaciens FZB42]
gi|385149759|gb|EIF13696.1| 30S ribosomal protein S1 [Bacillus sp. 5B6]
Length = 382
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFDTKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWATLN-----LREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS E+E A + L G++LEG V
Sbjct: 139 DFTDYK---GKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRK---MAWHRVRQIKQLNEPIEVKFTEWN 308
F + G+TLS R +LS R + K H Q ++ +E K
Sbjct: 140 FTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQDVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + +++G +LEG V+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQVGEKVKQGDVLEGKVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNESEERISLSMRELEEAP 348
>gi|227513320|ref|ZP_03943369.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
gi|227524464|ref|ZP_03954513.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
gi|227083193|gb|EEI18505.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
gi|227088334|gb|EEI23646.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
Length = 413
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS+RRL + W + + + E I K ++ GGL+ G+R F+P A ++S
Sbjct: 89 GSFLLSSRRLEARKVWDELAEKSKNGETITAKVSQAVKGGLVVDA-GVRGFIP-ASMIS- 145
Query: 332 VNNFTE-LKEKVGRRMYVQITRINEDTNDLILS-----------EREAWATLNLREGTLL 379
+++ E L + + + ++I I+ N LILS ERE L EG ++
Sbjct: 146 -DHYVEDLNQFKNQELELKIIEIDPVANRLILSHKAILQAQKAEEREKLMD-TLHEGDIV 203
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-D 438
EG V ++ +GA + +G GL+H+S ++ RV SD+L G+ VKV V+ F +
Sbjct: 204 EGKVARLTNFGAFVDLG--GMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRN 261
Query: 439 KISLSIADLESEP 451
+ISLSI EP
Sbjct: 262 RISLSIKQTLPEP 274
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 102/194 (52%), Gaps = 15/194 (7%)
Query: 270 LSGRPLLSTRRLFR-KMAWHRVRQIKQLNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKA 326
++ R +LS + + + + A R + + L+E +E K G + G+ + +
Sbjct: 170 VANRLILSHKAILQAQKAEEREKLMDTLHEGDIVEGKVARLTNFGAFVDLGGMDGLVHVS 229
Query: 327 EL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATLNLRE--GTLL 379
++ RV +++ KVG+ + V++ ++ D N + LS + E W + + G++L
Sbjct: 230 QIAYERVEKPSDVL-KVGQEVKVKVLSVDFDRNRISLSIKQTLPEPWDGIEEKAPAGSVL 288
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EGTVK++ +GA + + GL+HIS ++ + + D+L GE++KV V+ + PD
Sbjct: 289 EGTVKRLVDFGAFVEVF-PGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVL-DVDPDR 346
Query: 439 -KISLSIADLESEP 451
+++LSI L +P
Sbjct: 347 KRLALSIKALTDKP 360
>gi|399523751|ref|ZP_10764360.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
gi|398375296|gb|EJN52731.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
Length = 478
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 59/301 (19%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D
Sbjct: 26 TIKYF--NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHD------------- 70
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
V DD +A+ G + A VL + GR LLS +R
Sbjct: 71 ------------VNPDDVVAV-------------GDQIEALVLQKEDKEGRLLLSKKRAQ 105
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
+ AW ++ ++K+ + + E GGL+ I GLR FLP + L + +L +
Sbjct: 106 YERAWGKIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYI 162
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLEGTVKKIYPYGA 391
GR + +I ++++ N+++LS R AW L++G + G V I +GA
Sbjct: 163 GREIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFGA 221
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ +G + GL+H+S +S + S+++ G+ V V V+ M +++SLS+ + +
Sbjct: 222 FVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279
Query: 451 P 451
P
Sbjct: 280 P 280
>gi|312110427|ref|YP_003988743.1| RNA binding S1 domain-containing protein [Geobacillus sp. Y4.1MC1]
gi|311215528|gb|ADP74132.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
Length = 387
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS- 330
G +LS + + + AW + + E EV + GGL+ + G+R F+P A L+
Sbjct: 82 GLLILSKKAVDAERAWEELERRFASGETFEVIVKDIVKGGLVADV-GVRGFIP-ASLVEP 139
Query: 331 -RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLL 379
V +F++ K G+ + V++ ++ + N +ILS R A L G +L
Sbjct: 140 HYVEDFSDYK---GKPLAVKVVELDREKNRVILSHRAVVEEEQERQRKEALSRLETGQVL 196
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD- 438
EG V++I +G + +G + GL+HIS +S TRV SD++ EGE VKV V+ +
Sbjct: 197 EGIVRRITDFGVFVDVGGFD--GLVHISQLSHTRVAHPSDVVQEGETVKVKVLSVDEENG 254
Query: 439 KISLSIADLESEPGLFVSDK 458
++SLSI + P +++K
Sbjct: 255 RVSLSIKEALPSPWEGIAEK 274
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRIG 396
G + V++ ++E+ + LS +EA W + + G ++ G VK++ P+GA + I
Sbjct: 239 GETVKVKVLSVDEENGRVSLSIKEALPSPWEGIAEKIAPGDIVTGKVKRLVPFGAFVEIF 298
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
GL+HIS +S R+ + ++L EGE VK V+ S +ISLSI DL
Sbjct: 299 -PGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAERRISLSIRDL 349
>gi|257884883|ref|ZP_05664536.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
gi|257820721|gb|EEV47869.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
Length = 417
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 24/196 (12%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G LLS RRL K W + + Q + IE T GGL+ + G+R F+P + +
Sbjct: 100 NGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVPASMVED 158
Query: 331 R-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLL 379
V +F++ K G+ + +I I N LILS + + EG +L
Sbjct: 159 HFVADFSDYK---GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVL 215
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL--NEGERVKVLVVKSMFP 437
G V ++ +GA + +G + GL+H+S +S + V SDLL N+ VKVL S+ P
Sbjct: 216 SGRVARLTDFGAFVDLGGID--GLVHVSEISHSHVAKPSDLLAVNDDVNVKVL---SINP 270
Query: 438 --DKISLSIADLESEP 451
+++SLSI D + P
Sbjct: 271 EQERVSLSIKDTQPGP 286
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 68/113 (60%), Gaps = 10/113 (8%)
Query: 348 VQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRS 401
V++ IN + + LS ++ W+ ++ + GT+L+GTVK++ +GA + +
Sbjct: 263 VKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVF-PGVE 321
Query: 402 GLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
GL+HIS +S + + ++L+EG+ VKV V++ + P+ +I+LSI LE +P
Sbjct: 322 GLVHISQISHKHIATPHEVLHEGDEVKVKVLE-IHPEEHRIALSIKALEEKPA 373
>gi|430005936|emb|CCF21739.1| 30S ribosomal subunit protein S1 [Rhizobium sp.]
Length = 568
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 133/273 (48%), Gaps = 39/273 (14%)
Query: 195 DLLGTMLTKEVLPLYDKEMDFLLCDLKKDA----EEFMVRGKMGIVKDDDAIAMSGGSGP 250
DL +TK ++ +K+M + LK + +EF V+GK G +K D +
Sbjct: 23 DLAEGYVTKGLVTAIEKDMAVVDVGLKVEGRIALKEFGVKGKDGSLKVGDEVE------- 75
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG 310
++ E + L G +LS + R+ +W ++ + E +E G
Sbjct: 76 ----------VYVERIENAL-GEAVLSREKARREESWVKLEAKFEAGERVEGIIFNQVKG 124
Query: 311 GLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---- 365
G ++G AFLP++++ R + + T L +I ++++ ++++S R
Sbjct: 125 GFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLE 181
Query: 366 EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
E+ A NL EG +++G VK I YGA + +G + GLLH+++M+ RV S+
Sbjct: 182 ESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSE 239
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+L+ G+ VKV +++ + +ISL + LES+P
Sbjct: 240 ILSIGQSVKVQIIRINQETHRISLGMKQLESDP 272
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+ + VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-SIGQSVKVQIIRINQETHRISLGMKQLESDPWDGIAAKYPIGKKISGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|116249872|ref|YP_765710.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. viciae 3841]
gi|241207043|ref|YP_002978139.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|424873071|ref|ZP_18296733.1| ribosomal protein S1 [Rhizobium leguminosarum bv. viciae WSM1455]
gi|424879448|ref|ZP_18303080.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WU95]
gi|115254520|emb|CAK05594.1| putative 30S ribosomal protein S1 [Rhizobium leguminosarum bv.
viciae 3841]
gi|240860933|gb|ACS58600.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|392515811|gb|EIW40543.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WU95]
gi|393168772|gb|EJC68819.1| ribosomal protein S1 [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 567
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 133/273 (48%), Gaps = 39/273 (14%)
Query: 195 DLLGTMLTKEVLPLYDKEMDFLLCDLKKDA----EEFMVRGKMGIVKDDDAIAMSGGSGP 250
DL +TK ++ +K++ + LK + +EF R K G++K D +
Sbjct: 23 DLAEGYVTKGIVTGIEKDVAVVDVGLKVEGRIALKEFGARAKDGLLKVGDEVE------- 75
Query: 251 GRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTG 310
++ E + L G +LS + R+ +W ++ + E +E G
Sbjct: 76 ----------VYVERIENAL-GEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKG 124
Query: 311 GLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---- 365
G ++G AFLP++++ R + + T L +I ++++ ++++S R
Sbjct: 125 GFTVDLDGAIAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLE 181
Query: 366 EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
E+ A NL EG +++G VK I YGA + +G + GLLH+++M+ RV S+
Sbjct: 182 ESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSE 239
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+LN G++VKV +++ + +ISL + LES+P
Sbjct: 240 ILNIGQQVKVQIIRINQETHRISLGMKQLESDP 272
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLR--EGTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + EG + GTV
Sbjct: 233 RVNHPSEIL-NIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIQAKYPEGKKISGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
Length = 410
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ +++ +G LLS RRL + W V++ E I K T+ GGL+ G+
Sbjct: 79 VVISKIGNDKENGSYLLSHRRLEARKVWDDVQKKFDAGEHITAKVTQAVKGGLVVDA-GV 137
Query: 320 RAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN------ 372
R F+P + + V + + K G+ + +I I N LILS +E +
Sbjct: 138 RGFVPASMITDHYVEDLNQFK---GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKE 194
Query: 373 ----LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
L+ G ++EG V ++ +GA I +G + GL+H+S +S V SD+L G+ VK
Sbjct: 195 IFAKLQPGDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLEAGQEVK 252
Query: 429 VLVVKSMFPDKISLSIADLESEPG 452
V V+ ++ P++ +S++ ++ PG
Sbjct: 253 VKVL-NVDPERERISLSIKQTLPG 275
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 273 RPLLSTRRLFRKMAWHRVRQI---KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS + + + ++I Q + +E K G + G+ + +E+
Sbjct: 175 RLILSHKEIVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEIS 234
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLR--EGTLLEGT 382
V+ +++ E G+ + V++ ++ + + LS ++ W + + EG++L GT
Sbjct: 235 YDHVDKPSDVLE-AGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPEGSVLTGT 293
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KI 440
VK++ +GA + + GL+HIS +S + + +D+L G+ VKV V+ ++ P+ ++
Sbjct: 294 VKRLTSFGAFVEVF-PGVEGLVHISQISHKHIATPADVLKPGQEVKVKVL-NVDPEHQRL 351
Query: 441 SLSIADLESEP 451
LS+ LE P
Sbjct: 352 GLSMKALEERP 362
>gi|438000073|ref|YP_007183806.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813003|ref|YP_007449456.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339307|gb|AFZ83729.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451778972|gb|AGF49852.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 570
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS R R AW ++ Q + E I T GGL G+RAFLP + + L
Sbjct: 89 GDTVLSRDRAKRLSAWLKLEQALESGELITGSITGKVKGGLTVMTNGIRAFLPGSLVDLR 148
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATL---------NLREGTLLE 380
V + T + G+ M ++ +++ N+++LS R+ A++ NL EG +++
Sbjct: 149 PVKDTTPYE---GKTMEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLENLYEGAIVK 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA I +G + GLLHI++M+ RV S++L + ++ V+K ++
Sbjct: 206 GVVKNITDYGAFIDLGGID--GLLHITDMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNR 263
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 264 VSLGVKQLGEDP 275
>gi|375362802|ref|YP_005130841.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384265885|ref|YP_005421592.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898896|ref|YP_006329192.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens Y2]
gi|394993524|ref|ZP_10386269.1| 30S ribosomal protein S1 [Bacillus sp. 916]
gi|421731213|ref|ZP_16170339.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505676|ref|YP_007186860.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346526|ref|YP_007445157.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens IT-45]
gi|452856047|ref|YP_007497730.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|371568796|emb|CCF05646.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499238|emb|CCG50276.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173006|gb|AFJ62467.1| small subunit ribosomal protein S1 [Bacillus amyloliquefaciens Y2]
gi|393805636|gb|EJD67010.1| 30S ribosomal protein S1 [Bacillus sp. 916]
gi|407075367|gb|EKE48354.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487266|gb|AFZ91190.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850284|gb|AGF27276.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens IT-45]
gi|452080307|emb|CCP22069.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 382
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFDTKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILS-----EREAWATLN-----LREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS E+E A + L G++LEG V
Sbjct: 139 DFTDYK---GKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRK---MAWHRVRQIKQLNEPIEVKFTEWN 308
F + G+TLS R +LS R + K H Q ++ +E K
Sbjct: 140 FTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQDVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + +++G +LEG V+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQIGEKVKQGDVLEGKVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNESEERISLSMRELEEAP 348
>gi|422346815|ref|ZP_16427729.1| ribosomal protein S1 [Clostridium perfringens WAL-14572]
gi|373226360|gb|EHP48687.1| ribosomal protein S1 [Clostridium perfringens WAL-14572]
Length = 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 39/263 (14%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F VL G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEKEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGR- 142
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
L+E VG+ + V++ N++ +++S R W++ ++EG +
Sbjct: 143 -RIENLEELVGKTLEVRVIEFNKENRKVVVSRRIIDEEIRNNEKKALWSS--IKEGEKRK 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + + ++
Sbjct: 200 GKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDIDRER 257
Query: 440 ISLSIADLESEP-----GLFVSD 457
I+LS+ D+ P GL V D
Sbjct: 258 IALSLKDVIKNPWETLEGLKVGD 280
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 264 EVLGRTLS---------GRPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTE 306
E++G+TL R ++ +RR+ +K W +++ E + K T
Sbjct: 149 ELVGKTLEVRVIEFNKENRKVVVSRRIIDEEIRNNEKKALWSSIKE----GEKRKGKVTR 204
Query: 307 WNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365
G I G+ + +++ SRV+ E+ VG + V ++ ++ D + LS +
Sbjct: 205 LAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDIDRERIALSLK 263
Query: 366 EA----WATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
+ W TL L+ G ++ G V GA + + GL+HIS ++ + SD+
Sbjct: 264 DVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVL-QGIEGLVHISEITDENIAKPSDI 322
Query: 421 LNEGERVKVLVVKSMFPD-KISLSIAD 446
L G+ VKV ++ + K+SLSI D
Sbjct: 323 LELGQEVKVKILNIDDENKKMSLSIKD 349
>gi|239830871|ref|ZP_04679200.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301]
gi|239823138|gb|EEQ94706.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301]
Length = 576
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 35 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGSLKPGDEVEVYVERIENA 94
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 95 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 153
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 154 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 206
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 207 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 264
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LE++P
Sbjct: 265 NQETHRISLGMKQLENDP 282
>gi|386714595|ref|YP_006180918.1| 30S ribosomal protein S1 [Halobacillus halophilus DSM 2266]
gi|384074151|emb|CCG45644.1| 30S ribosomal protein S1 [Halobacillus halophilus DSM 2266]
Length = 380
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R + AW + + E E + + GGL+ I GLR F+P A L+ V
Sbjct: 80 VLSKRAVDADKAWQDLEDKYESGEIFEAEVKDVVKGGLVVDI-GLRGFIP-ASLVETYYV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F K GR + +++ ++ + N +ILS R + +L +G ++EGT
Sbjct: 138 EDFENYK---GRNLSLKVVELDREQNRVILSHRAVVEEEESAKKQEVLHSLEDGQVIEGT 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442
V+++ +GA + +G + GL+HIS +S V SD++ EG+ VKV V+ S+ D +
Sbjct: 195 VQRLTDFGAFVNLGGID--GLVHISQLSHQHVEKASDVVEEGQTVKVKVL-SVDRDNERI 251
Query: 443 SIADLESEPG 452
S++ ++PG
Sbjct: 252 SLSLKATQPG 261
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 343 GRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGTVKKIYPYGAQIRIG 396
G+ + V++ ++ D + LS + W + +++G +LEGTV+++ +GA + +
Sbjct: 234 GQTVKVKVLSVDRDNERISLSLKATQPGPWHDIQEKVKQGEVLEGTVRRLVSFGAFVEVF 293
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
GL+HIS +S + + ++L EG++V+V V+ ++SLS+ +LE+E
Sbjct: 294 -PGVEGLVHISQISNRHIGTPGEVLEEGQQVQVKVLDVDGEAKRLSLSMKELEAE 347
>gi|398311236|ref|ZP_10514710.1| 30S ribosomal protein S1 [Bacillus mojavensis RO-H-1]
Length = 382
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 20/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQDLLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIADLESEPG 452
SI E+ PG
Sbjct: 254 SIK--ETLPG 261
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ + + Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQDLLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS +E
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKET 258
Query: 368 ----WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W+ + ++ G +LEG V+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWSQVGEKVKPGDVLEGKVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEETP 348
>gi|330719102|ref|ZP_08313702.1| SSU ribosomal protein S1P [Leuconostoc fallax KCTC 3537]
Length = 395
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 101/189 (53%), Gaps = 19/189 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
LLS +RL + AW + + + ++ K GGL+ +EG+R F+P + + R V+
Sbjct: 90 LLSKKRLDARKAWENLNFAE--GDTVDAKVVNAVRGGLVVTVEGVRGFVPASMVAERFVS 147
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLEGTV 383
+ + K K + Q+ I+ + LILS + A + L G ++EGTV
Sbjct: 148 DLNQFKNK---DIKAQVIEIDPAKSRLILSRKAVIAQEHAEKIAEVFGKLSVGEVVEGTV 204
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
++ +GA I +G + GL+H+S +S RV + +D+L+ GE+V V ++ ++ +K +S
Sbjct: 205 ARLADFGAFIDLGGVD--GLVHVSEISYDRVKNPADVLSRGEKVNVKIL-ALDEEKGRIS 261
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 262 LSIKATQPG 270
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G + G+ + +E+ RV N ++ + G ++ V+I ++E+ + LS +
Sbjct: 211 GAFIDLGGVDGLVHVSEISYDRVKNPADVLSR-GEKVNVKILALDEEKGRISLSIKATQP 269
Query: 368 --WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + GT+LEGTVK++ +GA + I GL+H+S +S RV + +D+L
Sbjct: 270 GPWDKVAEEAPAGTVLEGTVKRVKDFGAFVEIF-PGIEGLIHVSQISHKRVENPADVLKS 328
Query: 424 GERVKVLVVKSM-FPDKISLSIADLESEPGLFVSDKEVHIIFLFILLFNKQ 473
G++VKV V+ ++ISLS+ LE +P D + I +N+Q
Sbjct: 329 GDKVKVQVLDVKPAEERISLSMKALEEKPAHEEEDNDGRASRADIAAYNQQ 379
>gi|429758811|ref|ZP_19291324.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429173025|gb|EKY14562.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 485
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 59/301 (19%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D
Sbjct: 33 TIKYF--NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHD------------- 77
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
V DD +A+ G + A VL + GR LLS +R
Sbjct: 78 ------------VNPDDVVAV-------------GDQIEALVLQKEDKEGRLLLSKKRAQ 112
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
+ AW ++ ++K+ + + E GGL+ I GLR FLP + L + +L +
Sbjct: 113 YERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYI 169
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLEGTVKKIYPYGA 391
GR + +I ++++ N+++LS R AW L++G + G V I +GA
Sbjct: 170 GREIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFGA 228
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ +G + GL+H+S +S + S+++ G+ V V V+ M +++SLS+ + +
Sbjct: 229 FVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 286
Query: 451 P 451
P
Sbjct: 287 P 287
>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens
YS-314]
gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
Length = 485
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + ++K+ +EP+ E GGL
Sbjct: 77 VVQVGDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVVKGGL 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L +G+ + +I ++++ N+++LS R
Sbjct: 137 ILDI-GLRGFLPAS--LVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQ 193
Query: 372 ---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 194 SEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVT 251
Query: 423 EGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ + +++SLS+ + +P
Sbjct: 252 VGDEVTVEVLDVDLDRERVSLSLKATQEDP 281
>gi|255037232|ref|YP_003087853.1| 30S ribosomal protein S1 [Dyadobacter fermentans DSM 18053]
gi|254949988|gb|ACT94688.1| RNA binding S1 domain protein [Dyadobacter fermentans DSM 18053]
Length = 598
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS ++ AW +++ + I+ GGL+ I G+ AFLP +++
Sbjct: 105 GQLVLSRKKAKVITAWDNIQKSFDEDVVIDANVKRRTKGGLIVDIFGIEAFLPGSQI--D 162
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-------EAWATL---NLREGTLLEG 381
V + VG+RM V++ +IN +++++S + EA NL +G +LEG
Sbjct: 163 VKPIRDFDVFVGKRMEVKVVKINYANDNVVVSHKILIEKDLEAQRQQILNNLEKGQVLEG 222
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
+K + +G I +G + GLLHI+++S R+ SDLL+ +++ V+V+ +I
Sbjct: 223 VIKNMTNFGVFIDLGGVD--GLLHITDISWGRINHPSDLLSLDQKLNVVVLDFDEEKKRI 280
Query: 441 SLSIADLESEP 451
SL + L+S P
Sbjct: 281 SLGLKQLQSHP 291
>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
43833]
gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
Length = 480
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +IK+ + + E GGL
Sbjct: 82 VVKVGDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGL 141
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---- 368
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 142 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 197
Query: 369 ------ATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 198 QSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 255
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 256 EVGQEVTVEVLDVDMERERVSLSLKATQEDP 286
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + +EL +++ +E+ E VG+ + V++ ++ + + LS +
Sbjct: 226 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVE-VGQEVTVEVLDVDMERERVSLSLKATQE 284
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W G ++ G V K+ P+GA +R+ + GL+HIS ++ V ++
Sbjct: 285 DPWQQFARTHQIGQVVPGRVTKLVPFGAFVRV-EEGIEGLVHISELAERHVEIPEQVVQV 343
Query: 424 GERVKVLVVK-SMFPDKISLSI--------ADLESEPGLF--VSDKEVHIIFLFILLFNK 472
G+ + V ++ + +ISLS+ AD+E +P L+ ++ + H +++ F+
Sbjct: 344 GDEIFVKIIDIDLERRRISLSLKQANEGVGADVEFDPTLYGMAANYDEHGNYIYPEGFDP 403
Query: 473 QYSVWF 478
+ W
Sbjct: 404 ETGEWL 409
>gi|384438724|ref|YP_005653448.1| RNA binding S1 domain-containing protein [Thermus sp. CCB_US3_UF1]
gi|359289857|gb|AEV15374.1| RNA binding S1 domain protein [Thermus sp. CCB_US3_UF1]
Length = 561
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 148/306 (48%), Gaps = 64/306 (20%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTM----LTKEVLPLYDKEMDFLLCDLKKDAEE 226
+PG + G VV + V++GA G + LT++VLP ++E+ LL K +E
Sbjct: 61 RPGQVLTGKVVLVGSEGVAVDIGAKTEGIIPFNQLTEKVLP--EEELKGLL----KPGDE 114
Query: 227 FMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMA 286
V+ +++ D ETG +L LS +++
Sbjct: 115 VRVQ----VLRVDP---------------ETGQIL--------------LSRKKVEATEH 141
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRR 345
W ++ + + EP+ V E GG++ ++G++AF+P ++L L R N L E VG++
Sbjct: 142 WDHIQALYERGEPVTVTVKEKVKGGVVAELDGVQAFIPASQLDLRRTPN---LDEYVGQQ 198
Query: 346 MYVQITRINEDTNDLILSER-----------EAWATLNLREGTLLEGTVKKIYPYGAQIR 394
+ +I + ++LS R EA+ +L+ G ++EG V + +GA +
Sbjct: 199 ILAKIIEFHRKKGRVLLSRRAVLEEEQKRAKEAFFQ-SLKPGQVVEGAVVDVTDFGAFVN 257
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEPG 452
+G + GL+H S ++ R +++++G+RV+ VV S+ P ++++LSI L +P
Sbjct: 258 LGPVD--GLVHRSEITWGRFGHPKEVIHKGQRVRAQVV-SVDPAKERVNLSIKALIPDPW 314
Query: 453 LFVSDK 458
V++K
Sbjct: 315 TTVAEK 320
>gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233]
gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
Length = 485
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VVE G + A VL + GR +LS +R + AW + +IK+ + + E GGL
Sbjct: 79 VVEIGEHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVSGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ VGR++ +I ++++ N+++LS R+ W
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRQLDAKIIELDKNRNNVVLSRRQ-WLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L +G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLGKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 EVGQEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|444309720|ref|ZP_21145352.1| 30S ribosomal protein S1 [Ochrobactrum intermedium M86]
gi|443486987|gb|ELT49757.1| 30S ribosomal protein S1 [Ochrobactrum intermedium M86]
Length = 566
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 25 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGSLKPGDEVEVYVERIENA 84
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 85 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 143
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M+V +I ++++ ++++S R E+ A NL
Sbjct: 144 IRPIRDVTPL-------MHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 196
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 197 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 254
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LE++P
Sbjct: 255 NQETHRISLGMKQLENDP 272
>gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
Length = 400
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 267 GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326
G +G S RL + A+ + ++ + + +E T GGLL + G R FLP +
Sbjct: 82 GDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVTGAVRGGLLVDV-GTRGFLPAS 140
Query: 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREG 376
+ +R ++LK +G++M ++IT I+ + N LILS + EA+ + L G
Sbjct: 141 LISNRY--VSDLKPYIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVG 198
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+EG V ++ +GA + +G + GL+HIS +S + SD+L G+ VKV V+ +
Sbjct: 199 DTVEGKVSRLTGFGAFVDVGGVD--GLVHISEISYKHIDKPSDVLKAGQDVKVKVI-GID 255
Query: 437 PD--KISLSIADL------ESEPGLFVSD---KEVHIIFLFILLFNKQYSVWFLVHL 482
D +ISLSI E+ GL D EV + F + LVH+
Sbjct: 256 DDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHV 312
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 273 RPLLSTRRLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
R +LS + L R+ A+ V + + +E K + G + G+ + +E+
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDVGGVDGLVHISEIS 230
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW------ATLNLREGTLLEGTV 383
+ + K G+ + V++ I++D + + LS ++ AT L EG ++EG V
Sbjct: 231 YKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEATEGLHEGDIIEGEV 290
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISL 442
K + +GA I + D + GL+H+S ++ V SD+L G+ VKV V+ D +ISL
Sbjct: 291 KTLTSFGAFIEVADGIQ-GLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISL 349
Query: 443 SI 444
SI
Sbjct: 350 SI 351
>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
Length = 382
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 104/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGTV 383
+F + K G+ + V+I ++ + N +ILS + + A +L+EG ++EGTV
Sbjct: 140 DFADYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++V V V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVNVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVNVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>gi|282897419|ref|ZP_06305421.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281198071|gb|EFA72965.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 299
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 30/264 (11%)
Query: 213 MDFLLCDLKKDAEEFM----VRGKMGIVKDDDAIAMSGGSGPG---------RPVVETGT 259
MD L+K +F VRGK+ + D A GG R V +
Sbjct: 17 MDDFAKALEKHDYQFQKGQTVRGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRTVTDLSE 76
Query: 260 VL-------FAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
+L F + + G+ +S R+L + W +V Q+++ ++ I V+ N GG+
Sbjct: 77 ILPLNEEMEFLIIREQDAEGQVTISRRQLEIQHIWEKVAQMQENSQSIPVRVIGVNKGGV 136
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372
+ LR F+PK+ LL R N LK G+ + V +N LILS+R A + N
Sbjct: 137 NVEVLSLRGFIPKSHLLER-ENLEALK---GQTLTVGFLEVNRANKKLILSQRLATRSSN 192
Query: 373 ---LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
L+ L+ G V I P+G + + S LLHI +S+ S+ + G+ +K
Sbjct: 193 LSLLQTDQLVTGKVTGIKPFGVFVDL--DGVSALLHIKQVSQKFTESLEKVFQIGQEIKG 250
Query: 430 LVVK-SMFPDKISLSIADLESEPG 452
+V+ ++++S LE+ PG
Sbjct: 251 IVIDIDESKGRVAISTRKLENYPG 274
>gi|110635932|ref|YP_676140.1| 30S ribosomal protein S1 [Chelativorans sp. BNC1]
gi|110286916|gb|ABG64975.1| SSU ribosomal protein S1P [Chelativorans sp. BNC1]
Length = 569
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 133/279 (47%), Gaps = 47/279 (16%)
Query: 193 GADLLGTMLTKEVLPLYDKEMDFLLCDLKKDA----EEFMVRGKMGIVKDDDAIAMSGGS 248
G D + + K ++ +K+M + LK + +EF R K G +K D +
Sbjct: 21 GRDAVEGSVVKGIITAIEKDMAIIDVGLKVEGRVPLKEFGARAKDGQLKPGDEVE----- 75
Query: 249 GPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
++ E + L G +LS + R+ +W ++ + E +E
Sbjct: 76 ------------VYVERIENAL-GEAMLSREKARREESWTKLEEKFNKGERVEGVIFNQV 122
Query: 309 TGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILS 363
GG ++G AFLP++++ R + + + L M+ +I ++++ ++++S
Sbjct: 123 KGGFTVDLDGAVAFLPRSQVDIRPIRDVSPL-------MHTPQPFEILKMDKRRGNIVVS 175
Query: 364 ER----EAWA------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
R E+ A NL EG ++EG VK I YGA + +G + GLLH+++M+ R
Sbjct: 176 RRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRR 233
Query: 414 VTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
V +++LN G+ VKV +++ + +ISL + LES+P
Sbjct: 234 VNHPTEILNIGQTVKVQIIRINQETHRISLGMKQLESDP 272
>gi|400756699|ref|NP_953648.2| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA]
gi|409913049|ref|YP_006891514.1| 30S ribosomal protein S1 [Geobacter sulfurreducens KN400]
gi|298506630|gb|ADI85353.1| ribosomal protein S1 [Geobacter sulfurreducens KN400]
gi|399108010|gb|AAR35975.2| ribosomal protein S1 [Geobacter sulfurreducens PCA]
Length = 586
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R+ R AW + +E K T GGL I G++AFLP +++ R
Sbjct: 106 GYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKGGLTVDI-GVQAFLPASQVDLR 164
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL------NLREGTLLEG 381
L + +G ++ ++N+ +++LS R E A + NL EG EG
Sbjct: 165 PGG--NLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREG 222
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK I YGA + IG + GLLH+++MS R+ S++L G+++ V ++K KI
Sbjct: 223 VVKNITDYGAFVDIGGVD--GLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKI 280
Query: 441 SLSIADLESEPGLFVSDK 458
SL + + +P L V K
Sbjct: 281 SLGLKQITPDPWLAVEQK 298
>gi|431228354|ref|ZP_19501495.1| ribosomal protein S1 [Enterococcus faecium E1622]
gi|430574656|gb|ELB13419.1| ribosomal protein S1 [Enterococcus faecium E1622]
Length = 409
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 122/257 (47%), Gaps = 40/257 (15%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG-----PGRP-----------VVETGTVL---FAEVLGR 268
+V+G++ +++D I G+G P + VV+ G VL +G+
Sbjct: 29 VVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVISTIGK 88
Query: 269 TL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+G LLS RRL K W + + Q + IE T GGL+ + G+R F+P +
Sbjct: 89 DKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVPASM 147
Query: 328 LLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREG 376
+ V +F++ K G+ + +I I N LILS + + EG
Sbjct: 148 VEDHFVADFSDYK---GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF 436
+L G V ++ +GA + +G + GL+H+S +S + V SD+L+ + V V V+ S+
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGID--GLVHVSEISHSHVAKPSDVLSVNDDVNVKVL-SIN 261
Query: 437 P--DKISLSIADLESEP 451
P +++SLSI D + P
Sbjct: 262 PEQERVSLSIKDTQPGP 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 10/119 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
V + V++ IN + + LS ++ W+ ++ + GT+L+GTVK++ +GA + +
Sbjct: 249 VNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV 308
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
GL+HIS +S + + ++L+EG+ VKV V++ + P+ +I+LSI LE +P
Sbjct: 309 F-PGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLE-IHPEEHRIALSIKALEEKPA 365
>gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX]
gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX]
Length = 485
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +IK+ + + E GGL+ I GLR FLP + L
Sbjct: 100 GRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVE 156
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLN-LREGTLLE 380
+ +L+ VGR + +I ++++ N+++LS R AW LN L++G + +
Sbjct: 157 MRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQTFLNTLQKGQIRK 215
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 216 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERER 273
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 274 VSLSLKATQEDP 285
>gi|329890647|ref|ZP_08268990.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568]
gi|328845948|gb|EGF95512.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568]
Length = 565
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S + R+ AW R+ + P+ GG + G AFLP +++ R
Sbjct: 87 GEAVISRDKARREEAWTRLEAVFAEGHPVNGAIVGRVKGGFTVDLGGASAFLPGSQVDIR 146
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA------TLNLREGTLLE 380
V + L +G+ I +++ ++++S R EA A L+EG + E
Sbjct: 147 PVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVGQLQEGEIRE 203
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G VK I YGA + +G + GLLH+++MS RV+ S +L G+ VKV +VK + PD
Sbjct: 204 GVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVSHPSQVLAVGDTVKVQIVK-INPDTQ 260
Query: 439 KISLSIADLESEP 451
+ISL + L+S+P
Sbjct: 261 RISLGMKQLQSDP 273
>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain-containing protein [Cellulomonas flavigena
DSM 20109]
gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
Length = 492
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV+ G + A VL + GR +LS +R + AW + +IK+ + + E
Sbjct: 79 PGE-VVKVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVV 137
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ VG+ + +I ++++ N+++LS R AW
Sbjct: 138 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLS-RRAW 193
Query: 369 ---------ATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
+T L++G + G V I +GA + +G + GL+H+S +S +
Sbjct: 194 LEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 251
Query: 418 SDLLNEGERVKVLVVKSMFP-DKISLSIADLESEP 451
S+++ G+ V V V++ F +++SLS+ + +P
Sbjct: 252 SEVVEVGQEVTVEVLEVDFDRERVSLSLKATQEDP 286
>gi|406983670|gb|EKE04832.1| hypothetical protein ACD_19C00431G0009 [uncultured bacterium]
Length = 364
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS R + W + + + + ++T G+ + G+ F+P ++L
Sbjct: 93 GSTLLSLRDAVSQATWKTIEEAHKNGTEVPAFAKGYSTSGIAVDVNGISGFVPTSQLSKE 152
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEG 381
+ E + VG+ ++ + N L+LSERE A ++++G L +
Sbjct: 153 LAK--EGQNIVGKYFKAKVIEFDRQKNKLVLSEREVTDAKDIAASKKAISSIKDGDLFDA 210
Query: 382 TVKKIYPYG--AQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439
V + +G A+I++ S GL+H+S +S +V SDLL G+++KV V+ + K
Sbjct: 211 VVTTVANFGVFAKIKVEKSEVEGLVHVSELSWGKVAHPSDLLKLGDKIKVKVIGTK-DGK 269
Query: 440 ISLSIADLESEPGLFVSDK 458
++LS+ +S+P + V K
Sbjct: 270 LALSMKHAQSDPWIDVDKK 288
>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
Length = 392
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 SGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F++ + G+ + +++ ++ + N +ILS + N L G +
Sbjct: 140 TDFIEDFSDFE---GQTIKIKVEELDPENNRVILSRKAVEQAENEVKKASLLDSLNAGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EG V ++ +GA + IG + GL+H+S +S V S +++ G++V V VKS+ D
Sbjct: 197 IEGKVARLTNFGAFVDIGGVD--GLVHVSELSHQHVQSPEEVVFVGDKVNVK-VKSVEKD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 300 IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTND 359
IE K G I G+ + +EL + E VG ++ V++ + +DT
Sbjct: 197 IEGKVARLTNFGAFVDIGGVDGLVHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTER 256
Query: 360 LILSEREAWATL------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
+ LS ++ T E ++EGTV ++ +GA + I GL+HIS +
Sbjct: 257 ISLSIKDTLPTPFAQIKGQFHENDVIEGTVVRLANFGAFVEIA-PGVQGLVHISEIDHKH 315
Query: 414 VTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ + ++L G++V V ++ +++SLSI
Sbjct: 316 IGTPGEVLEPGQQVSVKILGIDEENERVSLSI 347
>gi|86157945|ref|YP_464730.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
gi|197122752|ref|YP_002134703.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. K]
gi|220917535|ref|YP_002492839.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
gi|85774456|gb|ABC81293.1| SSU ribosomal protein S1P [Anaeromyxobacter dehalogenans 2CP-C]
gi|196172601|gb|ACG73574.1| ribosomal protein S1 [Anaeromyxobacter sp. K]
gi|219955389|gb|ACL65773.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
Length = 568
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 109/214 (50%), Gaps = 19/214 (8%)
Query: 251 GRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
G P V+ G + V R +G +LS + + W + + +E +E
Sbjct: 71 GEPAVKVGDKVEVLVESRENDTGMVVLSKEKADKMRIWDEISAACERDELVEGVIVGRVK 130
Query: 310 GGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--- 365
GGL I G++AFLP +++ R V N +L +G + ++ + N+ +++LS R
Sbjct: 131 GGLSVDI-GVKAFLPGSQVDIRPVRNLDKL---IGEKFKFKVIKFNKKRGNIVLSRRVLL 186
Query: 366 ------EAWATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
TL NL+EG +L+G VK + YGA I +G + GLLH+++MS R+ S
Sbjct: 187 EKEREELKKETLKNLKEGAILKGVVKNLTDYGAFIDLGGID--GLLHVTDMSWGRIGHPS 244
Query: 419 DLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
++ G+ V+V+V+K +++SL + ++ +P
Sbjct: 245 EMFEVGQEVRVVVLKFDPTSERVSLGLKQIQEDP 278
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W TL+ R G ++G V K+ +GA + I + GL+H+S M RV + D++ E
Sbjct: 451 DPWTTLSERHPVGARVKGRVTKVTDFGAFVEI-EPGIEGLVHVSEMKDERVENPRDVVQE 509
Query: 424 GERVKVLVVKSMFPD-KISLSIADLESEPG 452
G+ V+V V+ D K++LS+ + + G
Sbjct: 510 GQEVEVKVIDMDLQDRKVALSMKAVNRDGG 539
>gi|451812277|ref|YP_007448731.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778179|gb|AGF49127.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 570
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS R R AW ++ Q + E I T GGL G+RAFLP + + L
Sbjct: 89 GDTVLSRDRAKRLSAWLKLEQALESGELITGSITGKVKGGLTVMTNGIRAFLPGSLVDLR 148
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATL---------NLREGTLLE 380
V + T + G+ M ++ +++ N+++LS R+ A++ NL EG +++
Sbjct: 149 PVKDTTPYE---GKTMEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLENLYEGAVVK 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA I +G + GLLHI++M+ RV S++L + ++ V+K ++
Sbjct: 206 GVVKNITDYGAFIDLGGID--GLLHITDMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNR 263
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 264 VSLGVKQLGEDP 275
>gi|451936517|ref|YP_007460371.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777440|gb|AGF48415.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 570
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS R R AW ++ Q + E I T GGL G+RAFLP + + L
Sbjct: 89 GDTVLSRDRAKRLSAWLKLEQALESGELITGSITGKVKGGLTVMTNGIRAFLPGSLVDLR 148
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW-ATL---------NLREGTLLE 380
V + T + G+ M ++ +++ N+++LS R+ A++ NL EG +++
Sbjct: 149 PVKDTTPYE---GKTMEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLENLYEGAVVK 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA I +G + GLLHI++M+ RV S++L + ++ V+K ++
Sbjct: 206 GVVKNITDYGAFIDLGGID--GLLHITDMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNR 263
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 264 VSLGVKQLGEDP 275
>gi|429462693|ref|YP_007184156.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811552|ref|YP_007448007.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338207|gb|AFZ82630.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776710|gb|AGF47709.1| small subunit ribosomal protein S1 [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 570
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS R R AW ++ Q + E I T GGL G+RAFLP + + L
Sbjct: 89 GDTILSRDRAKRLSAWLKLEQALESGELITGTITGKVKGGLTVMTNGIRAFLPGSLVDLR 148
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLE 380
V + T + G+ M ++ +++ N+++LS R+ NL EG +++
Sbjct: 149 PVKDTTPYE---GKTMEFKVIKLDRKRNNVVLSRRQVLEASVGEERQKLLENLYEGAVVK 205
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YGA I +G + GLLHI++M+ RV S++L + ++ V+K ++
Sbjct: 206 GVVKNITDYGAFIDLGGVD--GLLHITDMAWRRVRHPSEVLQVCQEIEAKVLKFDQEKNR 263
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 264 VSLGVKQLGEDP 275
>gi|340616515|ref|YP_004734968.1| 30S ribosomal protein S1 [Zobellia galactanivorans]
gi|339731312|emb|CAZ94577.1| Ribosomal protein S1 [Zobellia galactanivorans]
Length = 610
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 17/200 (8%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT-GGLLTRIEGLRAFLPKAELL 329
SG+ +LS R+ MAW RV E I F + T GG++ + G+ AFLP +++
Sbjct: 125 SGQLVLSHRKARTIMAWDRVNAAHD-KEEIVSGFVKCRTKGGMIVDVFGIEAFLPGSQI- 182
Query: 330 SRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----------EREAWATLNLREGTLL 379
V + + VG+ M ++ +IN + ++++S E++ L +G +L
Sbjct: 183 -DVKPIRDYDQYVGKTMEFKVVKINHEFKNVVVSHKALIEADIEEQKKEIISQLEKGQVL 241
Query: 380 EGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPD 438
EG VK I YG + +G + GL+HI+++S +R+ ++++ +++ V+++
Sbjct: 242 EGVVKNITSYGVFVDLGGVD--GLVHITDLSWSRINHPNEVVELDQKINVVILDFDENKS 299
Query: 439 KISLSIADLESEPGLFVSDK 458
+I L + LE P +SD+
Sbjct: 300 RIQLGMKQLEKHPWDALSDE 319
>gi|303256837|ref|ZP_07342851.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
gi|330998916|ref|ZP_08322643.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
gi|302860328|gb|EFL83405.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
gi|329576130|gb|EGG57649.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
Length = 564
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 15/211 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS + R AW + + + E + T GGL G+RAFLP + + +R
Sbjct: 87 GDTVLSRDKAKRLAAWMNLEKALETGELVTGTVTGKVKGGLTVMTNGIRAFLPGSLVDTR 146
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEG 381
T E G+ M ++ +++ N+++LS R E A L L+EG +++G
Sbjct: 147 PVKDTTPYE--GKTMEFKVIKLDRKRNNVVLSRRAVVEASMGEERAKLLETLKEGAIVKG 204
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK I YGA + +G + GLLHI++++ RV S++L +G+ + V+K +++
Sbjct: 205 IVKNITDYGAFVDLGGID--GLLHITDLAWRRVRHPSEVLEQGQEITAKVLKFDQEKNRV 262
Query: 441 SLSIADLESEPGLFVSDKEVHIIFLFILLFN 471
SL I L +P + ++ + LF + N
Sbjct: 263 SLGIKQLGEDPWIGIARRYPQGTRLFGKVTN 293
>gi|429770785|ref|ZP_19302836.1| ribosomal protein S1 [Brevundimonas diminuta 470-4]
gi|429183645|gb|EKY24689.1| ribosomal protein S1 [Brevundimonas diminuta 470-4]
Length = 565
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G ++S + R+ AW R+ + P+ GG + G AFLP +++ R
Sbjct: 87 GEAVISRDKARREEAWTRLEAVFAEGHPVNGAIVGRVKGGFTVDLGGASAFLPGSQVDIR 146
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA------TLNLREGTLLE 380
V + L +G+ I +++ ++++S R EA A L+EG + E
Sbjct: 147 PVRDVGPL---MGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVGQLQEGEVRE 203
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-- 438
G VK I YGA + +G + GLLH+++MS RV+ S +L G+ VKV +VK + PD
Sbjct: 204 GVVKNITDYGAFVDLGGID--GLLHVTDMSWKRVSHPSQVLAVGDTVKVQIVK-INPDTQ 260
Query: 439 KISLSIADLESEP 451
+ISL + L+S+P
Sbjct: 261 RISLGMKQLQSDP 273
>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
Length = 487
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW + +IK+ + + E GGL
Sbjct: 82 VVKVGDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGL 141
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---- 368
+ I GLR FLP + L + +L+ VGR + +I ++++ N+++LS R AW
Sbjct: 142 ILDI-GLRGFLPAS--LVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLS-RRAWLEQT 197
Query: 369 ------ATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 198 QSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 255
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 256 EVGQEVTVEVLDVDMERERVSLSLKATQEDP 286
>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
sepedonicus]
gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
sepedonicus]
Length = 484
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 114/211 (54%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV+ G + A VL + GR +LS +R + AW V +IK+ + + E GGL
Sbjct: 81 VVKVGDTVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKESDGVVTGTVIEVVKGGL 140
Query: 313 LTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------ 365
+ I GLR FLP + + L RV + T +G+ + +I ++++ N+++LS R
Sbjct: 141 IVDI-GLRGFLPASLIELRRVRDLTPY---LGQEIEAKILELDKNRNNVVLSRRALLEQT 196
Query: 366 --EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
E+ +T NL++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 197 QSESRSTFLNNLQKGQVRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIEHASEVV 254
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V +++ + +++SLS+ + +P
Sbjct: 255 EVGQEVTVEILEVDLDRERVSLSLKATQEDP 285
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + +EL + + +E+ E VG+ + V+I ++ D + LS +
Sbjct: 225 GAFVDLGGVDGLVHVSELSWKHIEHASEVVE-VGQEVTVEILEVDLDRERVSLSLKATQE 283
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W G + G V K+ P+GA +R+ + GL+HIS +S V +++
Sbjct: 284 DPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAE-GIEGLVHISELSGKHVELAEQVVSV 342
Query: 424 GERVKVLVVK-SMFPDKISLSI 444
G+ V V V+ + +ISLS+
Sbjct: 343 GDEVFVKVIDIDLERRRISLSL 364
>gi|366088527|ref|ZP_09455000.1| 30S ribosomal protein S1 [Lactobacillus acidipiscis KCTC 13900]
Length = 397
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 20/205 (9%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ +++ G LLS RRL + W + Q + E I T+ GGL+ G+
Sbjct: 76 VVISKIGSDKEGGSFLLSQRRLEARKVWDEIEQKFESGENITAPVTQVVKGGLVVDA-GV 134
Query: 320 RAFLPKAELLSRVNNFTE-LKEKVGRRMYVQITRINEDTNDLILSEREAWATL------- 371
R F+P A ++S ++F E L + G+ + ++I I N LILS +E
Sbjct: 135 RGFIP-ASMVS--DHFVEDLSQFKGQELELKIVEIEPSENRLILSHKEIARAQREAKRQE 191
Query: 372 ---NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--R 426
L G ++EG V ++ +GA + +G + GL+H+S +S RV SD+L G+ +
Sbjct: 192 IMSKLAAGDVVEGKVARLTNFGAFVDLGGVD--GLVHVSEISYERVGKPSDVLKVGQDVK 249
Query: 427 VKVLVVKSMFPDKISLSIADLESEP 451
VKVL V S D+ISLSI +P
Sbjct: 250 VKVLSVDS-DRDRISLSIKQTLPQP 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 96/190 (50%), Gaps = 13/190 (6%)
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
R +LS + + R + ++I + +E K G + G+ + +E+
Sbjct: 172 RLILSHKEIARAQREAKRQEIMSKLAAGDVVEGKVARLTNFGAFVDLGGVDGLVHVSEIS 231
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLN--LREGTLLEGT 382
RV +++ KVG+ + V++ ++ D + + LS ++ W +N + EG ++EGT
Sbjct: 232 YERVGKPSDVL-KVGQDVKVKVLSVDSDRDRISLSIKQTLPQPWDNINEKVAEGDIIEGT 290
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KIS 441
VK++ +GA + + GL+HIS +S + + +++L GE VK V+ + +++
Sbjct: 291 VKRLTSFGAFVEVF-PGVEGLVHISQISHKHIATPNEVLTSGETVKAKVLSVDGENHRLA 349
Query: 442 LSIADLESEP 451
LSI L+ +P
Sbjct: 350 LSIKALQDKP 359
>gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain-containing protein [Clostridium thermocellum ATCC
27405]
gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|385778858|ref|YP_005688023.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|419723125|ref|ZP_14250260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
gi|419724971|ref|ZP_14252026.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum ATCC 27405]
gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|380771591|gb|EIC05456.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|380780892|gb|EIC10555.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
Length = 694
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS R++ +W + + + P+ E GG++ +G+R F+P +++ R
Sbjct: 372 GNVRLSKRKVDAIKSWDDIVKAYENKTPVNAYVVEVVKGGVIASYKGVRIFVPASQVSDR 431
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAWA--TLNLRE-GTLLEG 381
+L E + R + V+I +NE ++ S E+EA A T N E G + +G
Sbjct: 432 Y--VKDLNEFLKRSITVRILELNEKRRKVVGSARVIIEEEKEALANRTWNSMEVGKVFKG 489
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
TVK + +GA + IG + GL+HIS +S TRV S++L G+ V+V V++ K+
Sbjct: 490 TVKSLTDFGAFVDIGGVD--GLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKV 547
Query: 441 SLSIADLESEPGLFVSDK 458
SL +E P + +K
Sbjct: 548 SLGYRKMEDNPWYKIEEK 565
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G I G+ + +EL +RV + +E+ KVG + V + +++ + L R+
Sbjct: 498 GAFVDIGGVDGLIHISELSWTRVKHPSEVL-KVGDEVEVTVLEFDKEKKKVSLGYRKMED 556
Query: 368 --WATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + + G +++ TV + P+GA + + + GL+HIS +S R+ V D L
Sbjct: 557 NPWYKIEEKYKVGDVVKVTVLRFAPFGAFVEL-EKGVDGLVHISQISSKRLAKVEDALEI 615
Query: 424 GERVKVLVVKSMFPD-KISLSIADL 447
G +V +++ + KISLSI ++
Sbjct: 616 GMKVDAKIIEVDGENKKISLSIKEV 640
>gi|398830865|ref|ZP_10589046.1| ribosomal protein S1 [Phyllobacterium sp. YR531]
gi|398213445|gb|EJN00039.1| ribosomal protein S1 [Phyllobacterium sp. YR531]
Length = 566
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 131/263 (49%), Gaps = 35/263 (13%)
Query: 215 FLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV------------- 260
F DL AE ++V+G++ ++ D AI +G GR P+ E G
Sbjct: 19 FATNDL---AEGYVVKGRVVAIEKDMAIIDAGLKVEGRVPLKEFGAKAKDGSLKPGDIVE 75
Query: 261 LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLR 320
++ E + L G +LS + R+ +W R+ + E ++ GG ++G
Sbjct: 76 VYVERIENAL-GEAVLSREKARREESWVRLEEKFNRGERVDGVIFNQVKGGFTVDLDGAV 134
Query: 321 AFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA------ 369
AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 135 AFLPRSQVDIRPIRDVTPLMHNP---QPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEI 191
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L+ G+ VKV
Sbjct: 192 VQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILSIGQTVKV 249
Query: 430 LVVK-SMFPDKISLSIADLESEP 451
+++ + +ISL + LES+P
Sbjct: 250 QIIRINQETHRISLGMKQLESDP 272
>gi|406912513|gb|EKD52111.1| hypothetical protein ACD_62C00112G0003 [uncultured bacterium]
Length = 564
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 17/200 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G +LS R AW +V ++ + + I+ GGL + G++AFLP +++ L
Sbjct: 87 GHVVLSKERADAFEAWRQVEEVHEKDGIIDGLVVNKVKGGLSVNLGGIKAFLPGSQIDLK 146
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAW---ATLNLREGTLLE 380
V + +L +G + +I ++N+ +++LS ERE N++EG ++
Sbjct: 147 PVKSLDKL---IGHKYQFKILKLNKSKGNIVLSRRAILEVERETMRRDILENIKEGQIIR 203
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK I YG I +G + GLLHI++++ RV+ ++L E + V+V+K +K
Sbjct: 204 GVVKNITDYGVFIDLGGID--GLLHITDLTWGRVSHPKEVLKVNEEIDVVVLKYDPKTEK 261
Query: 440 ISLSIADLESEPGLFVSDKE 459
+SL + L+ +P V + E
Sbjct: 262 VSLGLKQLQEDPWTKVGNYE 281
>gi|389817642|ref|ZP_10208235.1| 30S ribosomal protein S1 [Planococcus antarcticus DSM 14505]
gi|388464410|gb|EIM06741.1| 30S ribosomal protein S1 [Planococcus antarcticus DSM 14505]
Length = 381
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 20/185 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V 332
+LS R++ + AW + + + E IE + + GGL+ + G+R F+P A L+ V
Sbjct: 80 VLSKRKVDAEQAWDELEKKFESGEIIEAEVKDVVKGGLVVDL-GVRGFVP-ASLVEDYFV 137
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER----------EAWATLNLREGTLLEGT 382
+F + K G+ + +I + ++ N LILS R + + G L+G
Sbjct: 138 ESFEDYK---GKTLTFKIVEMEKENNRLILSHRAVIEKEKESQKVQVMEKIHAGDELKGK 194
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V++I +GA + IG + GL+HIS +S V VSD++ EG+ V V V+ ++IS
Sbjct: 195 VQRIASFGAFVDIGGVD--GLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSERIS 252
Query: 442 LSIAD 446
LSI D
Sbjct: 253 LSIKD 257
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 35/218 (16%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRK-MAWHRVRQIKQLNEPIEVKFTEWNTG 310
F + G+TL+ R +LS R + K +V+ +++++ E+K
Sbjct: 140 FEDYKGKTLTFKIVEMEKENNRLILSHRAVIEKEKESQKVQVMEKIHAGDELK------- 192
Query: 311 GLLTRIEGLRAF--LPKAELLSRVNNFT-ELKEKV------GRRMYVQITRINEDTNDLI 361
G + RI AF + + L ++ + E EKV G+ + V++ ++ D+ +
Sbjct: 193 GKVQRIASFGAFVDIGGVDGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSERIS 252
Query: 362 LSEREA----WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT 415
LS ++ W +++ + +G++ G VK++ YGA + + S GL+HIS ++ +
Sbjct: 253 LSIKDTLPGPWDSIDEKAPKGSVHTGMVKRLVSYGAFVEVL-SGVEGLVHISQIAHKHIA 311
Query: 416 SVSDLLNEGERVKVLVVKSMFPDK-ISLSIADLESEPG 452
+ +++L EGE V+V V++ DK +SLSI +L+ + G
Sbjct: 312 TPNEVLTEGEEVQVKVLEVNKTDKRLSLSIKELKEKEG 349
>gi|422455909|ref|ZP_16532578.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|227824088|ref|YP_002828061.1| 30S ribosomal protein S1 [Sinorhizobium fredii NGR234]
gi|227343090|gb|ACP27308.1| 30S ribosomal protein S1 [Sinorhizobium fredii NGR234]
Length = 568
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGVITAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGSLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWMRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L+ G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILSIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-SIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
17982]
gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
gi|399526549|ref|ZP_10766316.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
gi|153798485|gb|EDN80905.1| 30S ribosomal protein S1 [Actinomyces odontolyticus ATCC 17982]
gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
gi|398362900|gb|EJN46562.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
Length = 478
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 59/301 (19%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKD 223
+++Y+ GD V G VV + +++ +++G G +L++E+ +D
Sbjct: 26 TIKYF--NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHD------------- 70
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLF 282
V DD +A+ G + A VL + GR LLS +R
Sbjct: 71 ------------VNPDDVVAV-------------GDQIEALVLQKEDKEGRLLLSKKRAQ 105
Query: 283 RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKV 342
+ AW ++ ++K+ + + E GGL+ I GLR FLP + L + +L +
Sbjct: 106 YERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYI 162
Query: 343 GRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLEGTVKKIYPYGA 391
GR + +I ++++ N+++LS R AW L++G + G V I +GA
Sbjct: 163 GREIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFGA 221
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESE 450
+ +G + GL+H+S +S + S+++ G+ V V V+ M +++SLS+ + +
Sbjct: 222 FVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279
Query: 451 P 451
P
Sbjct: 280 P 280
>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
gi|13432211|sp|P46836.2|RS1_MYCLE RecName: Full=30S ribosomal protein S1
gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
Length = 481
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 254 VVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT-- 370
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQT 194
Query: 371 --------LN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
LN L++G + +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G V V V+ M +++SLS+ + +P
Sbjct: 253 QVGNEVTVEVLDVDMDRERVSLSLKATQEDP 283
>gi|392425146|ref|YP_006466140.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus acidiphilus SJ4]
gi|391355109|gb|AFM40808.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus acidiphilus SJ4]
Length = 662
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R+ A R++Q+ + E I+ K E GGL+ + G+R F+P +++ +
Sbjct: 357 GHTVLSKRKADEAGAQDRLKQLAESKEEIQAKVIETVKGGLVVDV-GMRGFVPASQI--Q 413
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATL------NLREGTLLEG 381
+ +L + +G+ + +++ +ILS++ E A L+EG ++ G
Sbjct: 414 LGYVEDLNQFLGQTLRLRLLEFEPAKRKVILSQKVILEEEKAKKRKHLLETLKEGDVVSG 473
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V+++ +G + IG + GLLHIS+M+ TR+ S++L G+ V+V V+K KI
Sbjct: 474 EVRRMADFGVFVDIGGLD--GLLHISDMAYTRIKHPSEILKVGDHVEVQVLKLDQATGKI 531
Query: 441 SLSIADLESEP 451
SL + L+ P
Sbjct: 532 SLGLKQLKESP 542
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 83/149 (55%), Gaps = 12/149 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
G+ I GL L +++ +R+ + +E+ KVG + VQ+ ++++ T + L ++
Sbjct: 482 GVFVDIGGLDGLLHISDMAYTRIKHPSEIL-KVGDHVEVQVLKLDQATGKISLGLKQLKE 540
Query: 367 -AWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
WA + + G+++ G V +I +GA +++ D GL+HIS +S R++ V ++L
Sbjct: 541 SPWAQADQKYPLGSIVTGKVVRIVTFGAFVQLED-GVDGLIHISQISNRRISKVEEVLKV 599
Query: 424 GERVKVLVVKSMFPD--KISLSIADLESE 450
G+ V V++ P+ +ISLSI + S+
Sbjct: 600 GDMVSAKVIECK-PEVKRISLSIREAASD 627
>gi|103486980|ref|YP_616541.1| 30S ribosomal protein S1 [Sphingopyxis alaskensis RB2256]
gi|98977057|gb|ABF53208.1| SSU ribosomal protein S1P [Sphingopyxis alaskensis RB2256]
Length = 570
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 23/196 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN--TGGLLTRIEGLRAFLPKAEL 328
+G +LS R R+ AW R+ + + N+ V+ + GG + G AFLP +++
Sbjct: 87 NGETMLSRDRARREAAWDRLEE--EFNKEARVEGVIFGRVKGGFTVDLGGAVAFLPGSQV 144
Query: 329 LSR----VNNFTELKE-----KVGRR---MYVQITRINEDTNDLILSEREAWATLNLREG 376
R V +L + K+ RR + V I E+T +E+ + NL EG
Sbjct: 145 DIRPVRDVGPLMDLPQPFQILKMDRRRGNIVVSRRAILEETR----AEQRSGLIQNLEEG 200
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SM 435
++EG VK I YGA + +G + GLLH+++MS RV S+++N G+ VKV +++ +
Sbjct: 201 QIIEGAVKNITDYGAFVDLGGID--GLLHVTDMSYKRVNHPSEIINIGDTVKVQIIRINR 258
Query: 436 FPDKISLSIADLESEP 451
+ISL + LES+P
Sbjct: 259 DTQRISLGMKQLESDP 274
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ L ++ RVN+ +E+ +G + VQI RIN DT + L E
Sbjct: 214 GAFVDLGGIDGLLHVTDMSYKRVNHPSEII-NIGDTVKVQIIRINRDTQRISLGMKQLES 272
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT-SVSDLLN 422
+ W + + G L GTV I YGA + + + GL+H+S MS + +++
Sbjct: 273 DPWEGVAAKYPVGAKLSGTVTNITDYGAFVEL-EPGIEGLVHVSEMSWVKKNVHPGKIVS 331
Query: 423 EGERVKVLVVKSMFPDK--ISLSIADLESEP 451
+ V+V+V++ + DK ISL + +S P
Sbjct: 332 TSQEVEVIVLE-VDSDKRRISLGLKQAQSNP 361
>gi|398355891|ref|YP_006401355.1| 30S ribosomal protein S1 [Sinorhizobium fredii USDA 257]
gi|390131217|gb|AFL54598.1| 30S ribosomal protein S1 [Sinorhizobium fredii USDA 257]
Length = 568
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGVVTAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGSLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWMRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA--- 369
G AFLP++++ R + + T L +I ++++ ++++S R E+ A
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 370 ---TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L+ G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILSIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVK 384
RVN+ +E+ +G+++ VQI RIN++T+ + L E + W + + G + GTV
Sbjct: 233 RVNHPSEIL-SIGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVT 291
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
I YGA + + + GL+HIS MS T+
Sbjct: 292 NITDYGAFVEL-EPGIEGLIHISEMSWTK 319
>gi|350569650|ref|ZP_08938046.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
gi|348660468|gb|EGY77178.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
gi|386071678|ref|YP_005986574.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
gi|422390898|ref|ZP_16470993.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
gi|422459760|ref|ZP_16536408.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
gi|422464648|ref|ZP_16541255.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
gi|422466302|ref|ZP_16542878.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
gi|422470228|ref|ZP_16546749.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
gi|422564991|ref|ZP_16640642.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
gi|422576182|ref|ZP_16651720.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
gi|353456044|gb|AER06563.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|261218030|ref|ZP_05932311.1| ribosomal protein S1 [Brucella ceti M13/05/1]
gi|261321120|ref|ZP_05960317.1| ribosomal protein S1 [Brucella ceti M644/93/1]
gi|260923119|gb|EEX89687.1| ribosomal protein S1 [Brucella ceti M13/05/1]
gi|261293810|gb|EEX97306.1| ribosomal protein S1 [Brucella ceti M644/93/1]
Length = 566
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 40/258 (15%)
Query: 224 AEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV-------------LFAEVLGRT 269
AE ++V+G++ ++ D AI +G GR P+ E G ++ E +
Sbjct: 25 AEGYVVKGRIVAIEKDMAIIDAGLKVEGRVPLKEFGAKGKDGTLKPGDEVEVYVERIENA 84
Query: 270 LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL 329
L G +LS + R+ +W ++ Q E ++ GG ++G AFLP++++
Sbjct: 85 L-GEAVLSREKARREESWVKLEQKFANGERVDGVIFNQVKGGFTVDLDGAVAFLPRSQVD 143
Query: 330 SR-VNNFTELKEKVGRRMYV----QITRINEDTNDLILSER----EAWA------TLNLR 374
R + + T L M++ +I ++++ ++++S R E+ A NL
Sbjct: 144 IRPIRDVTPL-------MHLPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLE 196
Query: 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK- 433
EG ++EG VK I YGA + +G + GLLH+++M+ RV S++L G+ VKV +++
Sbjct: 197 EGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRI 254
Query: 434 SMFPDKISLSIADLESEP 451
+ +ISL + LES+P
Sbjct: 255 NQETHRISLGMKQLESDP 272
>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
gi|335052226|ref|ZP_08545118.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
gi|335053985|ref|ZP_08546810.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
gi|342212943|ref|ZP_08705668.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
gi|354606752|ref|ZP_09024722.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
gi|365962490|ref|YP_004944056.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
gi|365964734|ref|YP_004946299.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
gi|365973670|ref|YP_004955229.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
gi|386023737|ref|YP_005942040.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
gi|407935191|ref|YP_006850833.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
gi|417929618|ref|ZP_12573002.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
gi|419420987|ref|ZP_13961215.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
gi|422385153|ref|ZP_16465288.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
gi|422388231|ref|ZP_16468334.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
gi|422393353|ref|ZP_16473406.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
gi|422396184|ref|ZP_16476215.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
gi|422424231|ref|ZP_16501181.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
gi|422428339|ref|ZP_16505250.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
gi|422431256|ref|ZP_16508135.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
gi|422432942|ref|ZP_16509810.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
gi|422435485|ref|ZP_16512342.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
gi|422443300|ref|ZP_16520098.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
gi|422445462|ref|ZP_16522209.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
gi|422448818|ref|ZP_16525543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
gi|422454691|ref|ZP_16531371.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
gi|422461630|ref|ZP_16538254.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
gi|422474499|ref|ZP_16550963.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
gi|422477823|ref|ZP_16554246.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
gi|422480378|ref|ZP_16556781.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
gi|422482871|ref|ZP_16559260.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
gi|422485652|ref|ZP_16562014.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
gi|422488901|ref|ZP_16565230.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
gi|422490994|ref|ZP_16567309.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
gi|422493049|ref|ZP_16569349.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
gi|422496028|ref|ZP_16572315.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
gi|422498768|ref|ZP_16575040.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
gi|422501060|ref|ZP_16577314.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
gi|422502579|ref|ZP_16578824.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
gi|422506528|ref|ZP_16582751.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
gi|422507862|ref|ZP_16584043.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
gi|422510900|ref|ZP_16587046.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
gi|422513122|ref|ZP_16589245.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
gi|422515996|ref|ZP_16592105.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
gi|422521619|ref|ZP_16597649.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
gi|422527010|ref|ZP_16603000.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
gi|422529451|ref|ZP_16605417.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
gi|422534099|ref|ZP_16610023.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
gi|422537621|ref|ZP_16613509.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
gi|422539707|ref|ZP_16615580.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
gi|422542629|ref|ZP_16618479.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
gi|422545683|ref|ZP_16621513.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
gi|422547568|ref|ZP_16623384.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
gi|422549423|ref|ZP_16625223.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
gi|422552498|ref|ZP_16628289.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
gi|422556547|ref|ZP_16632301.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
gi|422561230|ref|ZP_16636917.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
gi|422563322|ref|ZP_16638999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
gi|422568915|ref|ZP_16644533.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
gi|422569692|ref|ZP_16645299.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
gi|422578941|ref|ZP_16654465.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
gi|333764312|gb|EGL41709.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
gi|333765766|gb|EGL43098.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
gi|340768487|gb|EGR91012.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
gi|340773741|gb|EGR96233.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
gi|353556867|gb|EHC26236.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
gi|365739171|gb|AEW83373.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741415|gb|AEW81109.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
gi|365743669|gb|AEW78866.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
gi|379977478|gb|EIA10803.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
gi|407903772|gb|AFU40602.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
gi|456739550|gb|EMF64089.1| 30S ribosomal protein S1 [Propionibacterium acnes FZ1/2/0]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|331002776|ref|ZP_08326290.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413265|gb|EGG92633.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 232
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 301 EVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTND 359
+VK TE GG + +E +RAF+P ++L ++ V N E +G+ + V +
Sbjct: 45 KVKITEVVKGGCIAFLEEVRAFIPASQLSTQYVENLDEF---LGKSLEVIVITAEPAKKK 101
Query: 360 LILSER---------EAWATLN-LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409
L+LS R E A + ++ G +LEG V I YGA I +GD SGLLH+S +
Sbjct: 102 LVLSHRAIEKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDLGD-GISGLLHVSQI 160
Query: 410 SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448
S RV + + +L EGE VKV V + KISLS LE
Sbjct: 161 SNQRVKNPAAVLKEGETVKVKVT-GIKDGKISLSKKALE 198
>gi|225433644|ref|XP_002264430.1| PREDICTED: 30S ribosomal protein S1 homolog [Vitis vinifera]
gi|296089601|emb|CBI39420.3| unnamed protein product [Vitis vinifera]
Length = 390
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 17/203 (8%)
Query: 274 PLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
P + R+ R W R + E + +N GGLL R L FLP +L S +
Sbjct: 82 PFDAIRQARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQL-SPSH 140
Query: 334 NFTE--------LKEKVGRRMYVQITRINEDTNDLILSEREA-WATLN--LREGTLLEGT 382
+ E K +G + V++ +E+ LI SE+EA W + + G + E
Sbjct: 141 SCKEPHKTIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAM 200
Query: 383 VKKIYPYGAQIRI----GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
V + YGA + + G + +GL+H+S +S V V D+LNEG+ V+V +VK
Sbjct: 201 VGSVEDYGAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVK 260
Query: 438 DKISLSIADLESEPGLFVSDKEV 460
+I+LSI LE +P L DK +
Sbjct: 261 SRITLSIKQLEEDPLLETLDKVI 283
>gi|94985677|ref|YP_605041.1| 30S ribosomal protein S1 [Deinococcus geothermalis DSM 11300]
gi|94555958|gb|ABF45872.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
Length = 587
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 19/190 (10%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS +R + W + ++++ +E EV+ E GGL+ ++EG+RAFLP +++ +R N
Sbjct: 139 VLSKKRADQDKGWRVLERMQEQDEAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVN 198
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQ-- 392
+L VG+ + V++ +N N +I+S R A L ++ E T+ K+ P GAQ
Sbjct: 199 --DLDPYVGKPLMVKLIELNRKRNRVIISHR---AILEAQKAKAREQTIGKLVP-GAQFE 252
Query: 393 ---IRIGD-------SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
+ I D GL+H S ++ R D++ G++V+V V+ ++I+
Sbjct: 253 GEVVEITDFGVFVNLGGIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERIN 312
Query: 442 LSIADLESEP 451
LS+ L +P
Sbjct: 313 LSMKSLTQDP 322
>gi|422437824|ref|ZP_16514668.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
gi|422524653|ref|ZP_16600662.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
gi|422532624|ref|ZP_16608570.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|417931599|ref|ZP_12574964.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
gi|340775542|gb|EGR97595.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 [Clostridium novyi NT]
gi|118134043|gb|ABK61087.1| rpsA [Clostridium novyi NT]
Length = 387
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 105/199 (52%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS ++ AW ++ + +E K E GG+++ I G+RAF+P +++ +
Sbjct: 89 GNVLLSKKKADSVKAWDTLKDAFKNGTILEAKVDEVVKGGVVSYINGIRAFIPASQISAS 148
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----------WATLNLREGTLLEG 381
++K +G+ + V++ + N ++LS +E +L++G G
Sbjct: 149 F--VKDVKVFLGKTLKVKVIEFDGKKNKVVLSAKEVELKEIENKKQKVLASLKKGEKRSG 206
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--K 439
V+++ +GA + +G + GL+H S++S RV + SD++ G++V+V V+ D K
Sbjct: 207 VVRRLAKFGAFVDLGGVD--GLIHNSDLSWERVNNPSDVVKVGDKVEVYVL-DFHKDTGK 263
Query: 440 ISLSIADLESEPGLFVSDK 458
I+LS+ ++E +P VS K
Sbjct: 264 IALSLKNVEEDPWNNVSSK 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + ++L RVNN +++ KVG ++ V + ++DT + LS E
Sbjct: 215 GAFVDLGGVDGLIHNSDLSWERVNNPSDVV-KVGDKVEVYVLDFHKDTGKIALSLKNVEE 273
Query: 366 EAWATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W ++ + ++EG V K+ +GA + I GL+HI+ ++ + SD+L +
Sbjct: 274 DPWNNVSSKFKVNDIVEGKVVKLLDFGAFVEIL-GGVEGLVHITEITDENIAKPSDVLKK 332
Query: 424 GERVKVLVVKSMFPDK-ISLSIADLESE 450
G++VKV +++ DK I+LSI D E++
Sbjct: 333 GDKVKVKILEINENDKRIALSIKDAENK 360
>gi|430833535|ref|ZP_19451547.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430838908|ref|ZP_19456851.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430858583|ref|ZP_19476210.1| ribosomal protein S1 [Enterococcus faecium E1552]
gi|430486276|gb|ELA63135.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430491309|gb|ELA67782.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430545210|gb|ELA85196.1| ribosomal protein S1 [Enterococcus faecium E1552]
Length = 409
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 44/259 (16%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG-----PGRP-----------VVETGTVL---FAEVLGR 268
+V+G++ +++D I G+G P + VV+ G VL +G+
Sbjct: 29 VVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVISTIGK 88
Query: 269 TL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+G LLS RRL K W + + Q + IE T GGL+ + G+R F+P +
Sbjct: 89 DKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVPASM 147
Query: 328 LLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREG 376
+ V +F++ K G+ + +I I N LILS + + EG
Sbjct: 148 VEDHFVADFSDYK---GKTLSFKIIEIEPSENRLILSHKTVVENEREEKKKEILSTIHEG 204
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL--NEGERVKVLVVKS 434
+L G V ++ +GA + +G + GL+H+S +S + V SD+L N+ VKVL S
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGID--GLVHVSEISHSHVAKPSDVLAVNDDVNVKVL---S 259
Query: 435 MFP--DKISLSIADLESEP 451
+ P +++SLSI D + P
Sbjct: 260 INPEQERVSLSIKDTQPGP 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 10/119 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
V + V++ IN + + LS ++ W+ ++ + GT+L+GTVK++ +GA + +
Sbjct: 249 VNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV 308
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
GL+HIS +S + + ++L+EG+ VKV V++ + P+ +I+LSI LE +P
Sbjct: 309 F-PGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLE-IHPEEHRIALSIKALEEKPA 365
>gi|406580147|ref|ZP_11055365.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|406582367|ref|ZP_11057492.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|406584611|ref|ZP_11059636.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|406589505|ref|ZP_11063940.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410937808|ref|ZP_11369667.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
gi|404454526|gb|EKA01454.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|404458219|gb|EKA04666.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|404463841|gb|EKA09420.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|404470775|gb|EKA15370.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410733941|gb|EKQ75863.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
Length = 409
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 44/259 (16%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG-----PGRP-----------VVETGTVL---FAEVLGR 268
+V+G++ +++D I G+G P + VV+ G VL +G+
Sbjct: 29 VVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVISTIGK 88
Query: 269 TL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+G LLS RRL K W + + Q + IE T GGL+ + G+R F+P +
Sbjct: 89 DKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVPASM 147
Query: 328 LLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREG 376
+ V +F++ K G+ + +I I N LILS + + EG
Sbjct: 148 VEDHFVADFSDYK---GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL--NEGERVKVLVVKS 434
+L G V ++ +GA + +G + GL+H+S +S + V SD+L N+ VKVL S
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGID--GLVHVSEISHSHVAKPSDVLAVNDDVNVKVL---S 259
Query: 435 MFP--DKISLSIADLESEP 451
+ P +++SLSI D + P
Sbjct: 260 INPEQERVSLSIKDTQPGP 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 10/119 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
V + V++ IN + + LS ++ W+ ++ + GT+L+GTVK++ +GA + +
Sbjct: 249 VNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV 308
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
GL+HIS +S + + ++L+EG+ VKV V++ + P+ +I+LSI LE +P
Sbjct: 309 F-PGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLE-IHPEEHRIALSIKALEEKPA 365
>gi|402571670|ref|YP_006621013.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus meridiei DSM 13257]
gi|402252867|gb|AFQ43142.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus meridiei DSM 13257]
Length = 660
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 16/191 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R+ + A R+ ++ + E I+ + E GGL+ + GLR F+P +++ +
Sbjct: 357 GHTVLSKRKADEEGAKDRLEKLVESKEEIQAEVVEVVKGGLVVDV-GLRGFVPASQI--Q 413
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAWATL---NLREGTLLEG 381
+ +L + +G+ + +++ + ++LS ER T +L+EG ++ G
Sbjct: 414 LGYVDDLDQFLGQTLRLRLIDYDPAKRKVVLSQKVILEEERAVKRTQLLESLKEGDVVTG 473
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
TVK++ +G + IG + GLLHIS+M+ TR+ SD+L G+ V+V V+K K+
Sbjct: 474 TVKRMADFGVFVDIGGID--GLLHISDMAYTRIKHPSDMLKIGDEVEVQVLKLEQQTGKV 531
Query: 441 SLSIADLESEP 451
SL + L+ P
Sbjct: 532 SLGLKQLKESP 542
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 12/143 (8%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366
G+ I G+ L +++ +R+ + +++ K+G + VQ+ ++ + T + L ++
Sbjct: 482 GVFVDIGGIDGLLHISDMAYTRIKHPSDML-KIGDEVEVQVLKLEQQTGKVSLGLKQLKE 540
Query: 367 ---AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
A A N G ++ G V +I P+GA + +GD GL+HIS ++ RV V +++
Sbjct: 541 SPWAQAAKNFPIGAIVNGKVMRITPFGAFVGLGD-GVDGLVHISQLADHRVNKVEEVVKV 599
Query: 424 GERVKVLVVKSMFPD--KISLSI 444
G+ V ++ PD +ISLSI
Sbjct: 600 GDMVSAKIIDCK-PDEKRISLSI 621
>gi|168212813|ref|ZP_02638438.1| ribosomal protein S1 family [Clostridium perfringens CPE str.
F4969]
gi|170715502|gb|EDT27684.1| ribosomal protein S1 family [Clostridium perfringens CPE str.
F4969]
Length = 378
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 125/263 (47%), Gaps = 39/263 (14%)
Query: 228 MVRGKMGIVKDDDAIAMSG----GSGPGRPV----------VETGTVLFAEVL-GRTLSG 272
+V+GK+ VK+D+ I G G P + + +F +L G G
Sbjct: 24 IVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMILSGDDGEG 83
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
LLS +R W +++ + + I+V E GG++ GLR F+P ++ R
Sbjct: 84 NVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGR- 142
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER------------EAWATLNLREGTLLE 380
L+E VG+ + V++ N++ +++S R W++ ++EG +
Sbjct: 143 -RIENLEELVGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSS--IKEGEKRK 199
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V ++ +GA + IG GL+H+S+MS +RV ++++ G+ V+V V + + ++
Sbjct: 200 GKVTRLAKFGAFVDIG--GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDIDRER 257
Query: 440 ISLSIADLESEP-----GLFVSD 457
I+LS+ D+ P GL V D
Sbjct: 258 IALSLKDVIKNPWETLEGLKVGD 280
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 264 EVLGRTLS---------GRPLLSTRRLF--------RKMAWHRVRQIKQLNEPIEVKFTE 306
E++G+TL R ++ +RR+ +K W +++ E + K T
Sbjct: 149 ELVGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKE----GEKRKGKVTR 204
Query: 307 WNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365
G I G+ + +++ SRV+ E+ VG + V ++ ++ D + LS +
Sbjct: 205 LAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVV-SVGDEVEVFVSEVDIDRERIALSLK 263
Query: 366 EA----WATL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL 420
+ W TL L+ G ++ G V GA + + GL+HIS ++ + SD+
Sbjct: 264 DVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVL-PGIEGLVHISEITDENIAKPSDI 322
Query: 421 LNEGERVKVLVVKSMFPD-KISLSIAD 446
L G+ VKV ++ + K+SLSI D
Sbjct: 323 LELGQEVKVKILNIDDENKKMSLSIKD 349
>gi|334336975|ref|YP_004542127.1| RNA binding S1 domain-containing protein [Isoptericola variabilis
225]
gi|334107343|gb|AEG44233.1| RNA binding S1 domain protein [Isoptericola variabilis 225]
Length = 491
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV G V+ A VL + GR +LS +R + AW + +IK+ + + E
Sbjct: 77 PGE-VVAVGDVVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVV 135
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L VG+ + +I ++++ N+++LS R AW
Sbjct: 136 KGGLILDI-GLRGFLPAS--LVEMRRVRDLAPYVGKEIEAKIIELDKNRNNVVLS-RRAW 191
Query: 369 ---------ATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
+T L++G + G V I +GA + +G + GL+H+S +S +
Sbjct: 192 LEQTQSEVRSTFLQTLQKGQVRSGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 249
Query: 418 SDLLNEGERVKVLVVKSMFP-DKISLSIADLESEP 451
S+++ G+ V V V+ F +++SLS+ + +P
Sbjct: 250 SEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDP 284
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS----ER 365
G + G+ + +EL +++ +E+ E VG+ + V++ ++ D + LS +
Sbjct: 224 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVE-VGQEVTVEVLDVDFDRERVSLSLKATQE 282
Query: 366 EAWATLNLRE--GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
+ W T G ++ G V K+ P+GA +R+ D GL+HIS ++ V ++
Sbjct: 283 DPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVEDGI-EGLVHISELAVRHVELPEQVVTV 341
Query: 424 GERVKVLVVK-SMFPDKISLSI------ADLESE---PGLF 454
G+ V V V+ + +ISLS+ D ESE P L+
Sbjct: 342 GQEVFVKVIDIDLERRRISLSLKQANEGVDPESEDFDPALY 382
>gi|422452099|ref|ZP_16528800.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
Length = 498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|262195603|ref|YP_003266812.1| 30S ribosomal protein S1 [Haliangium ochraceum DSM 14365]
gi|262078950|gb|ACY14919.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365]
Length = 608
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 18/194 (9%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEG-LRAFLPKAEL- 328
+G +LS + R W + + +E IE T+ GGL I G ++AFLP +++
Sbjct: 89 AGMCVLSKEKADRFKVWDEISAACERDELIEGTITQRVKGGLSVTIRGGVKAFLPGSQVD 148
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAW--ATLN-LREGTL 378
L V N +G+ ++ + N+ +++LS ER A +TL L+EG
Sbjct: 149 LRPVRNLDAF---IGQSYKFKVIKFNKKRGNIVLSRRVLLEKERAALKESTLERLKEGQE 205
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFP 437
+EG VK + YGA I +G + GLLHI++MS RV S+L G+ V+V V+K +
Sbjct: 206 VEGIVKNLTEYGAFIDLGGID--GLLHITDMSWGRVNHPSELFQVGDHVRVKVLKFNADT 263
Query: 438 DKISLSIADLESEP 451
+++SL + + +P
Sbjct: 264 ERVSLGLKQISEDP 277
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 269 TLSGRPLLSTRRL-FRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
LS R LL R ++ R+++ +++ E I TE+ G + G+ L +
Sbjct: 178 VLSRRVLLEKERAALKESTLERLKEGQEV-EGIVKNLTEY---GAFIDLGGIDGLLHITD 233
Query: 328 L-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE----AWATLNLR--EGTLLE 380
+ RVN+ +EL + VG + V++ + N DT + L ++ W+ + GT++
Sbjct: 234 MSWGRVNHPSELFQ-VGDHVRVKVLKFNADTERVSLGLKQISEDPWSKAQEKYIPGTVVR 292
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
G V + YGA I + + GL+HIS MS TR
Sbjct: 293 GKVVSLKDYGAFIEL-EEGIEGLVHISEMSWTR 324
>gi|344925011|ref|ZP_08778472.1| 30S ribosomal protein S1 [Candidatus Odyssella thessalonicensis
L13]
Length = 575
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 25/221 (11%)
Query: 248 SGPGRPV-VETGTVLFAEVLGRTL---SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVK 303
+GPGR V+ G F +V + +G +LS + R+ AW + + E +
Sbjct: 64 AGPGRASEVKAGD--FIDVYVERMEDKNGCAVLSVEKARREAAWGELEKASITGELVNGV 121
Query: 304 FTEWNTGGLLTRIEGLRAFLPKAE-----------LLSRVNNFTELK-EKVGRRMYVQIT 351
GG +EG AFLP ++ L++ V F LK +K+ + V
Sbjct: 122 IFGKVKGGFAVDLEGAVAFLPGSQVDVRPIRDISPLMNIVQPFKILKMDKLRSNIVVSRR 181
Query: 352 RINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSR 411
+ ED SE+ A NL EG +LEG VK I YGA I +G + GLLH++++S
Sbjct: 182 AVLEDNR----SEQRAELVSNLSEGQVLEGIVKNITDYGAFIDLGGVD--GLLHVTDISW 235
Query: 412 TRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
R+ D+L GE ++V V++ + +ISL + LE++P
Sbjct: 236 RRINHPGDVLKVGETIQVQVIRFNRDTQRISLGMKQLEADP 276
>gi|422554450|ref|ZP_16630222.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
Length = 498
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQNFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
gi|385840473|ref|YP_005863797.1| 30S ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
gi|417788386|ref|ZP_12436069.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
gi|417810232|ref|ZP_12456911.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
gi|418961421|ref|ZP_13513307.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
gi|334308563|gb|EGL99549.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
gi|335349028|gb|EGM50528.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
gi|380343953|gb|EIA32300.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
Length = 397
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ A + G LLS RRL + W+ + + E I+ T+ GGL+ G+
Sbjct: 76 VVIARIGSDKEGGSYLLSQRRLEARRVWNEIEDKFKAGETIKAPVTQVVKGGLVVDA-GV 134
Query: 320 RAFLPKAELLSRVNNFTE-LKEKVGRRMYVQITRINEDTNDLILS-------EREA--WA 369
R F+P A ++S ++F E L + G+ + ++I I N LILS EREA A
Sbjct: 135 RGFVP-ASMVS--DHFVEDLNQFKGQELELKIVEIEPSDNRLILSRKELVQAEREAKRQA 191
Query: 370 TL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
+ L G ++EG V ++ +GA I +G + GL+H+S +S RV +D L G+ VK
Sbjct: 192 VMEKLVAGDVVEGKVARLTNFGAFIDLGGVD--GLVHVSEISYERVNKPADALKVGQEVK 249
Query: 429 VLVVK-SMFPDKISLSIADLESEP 451
V V+ +ISLSI EP
Sbjct: 250 VKVLSVDAEKGRISLSIKQTLPEP 273
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSER----EAWATL--NLREGTLLEGTVKKIYPYGAQIR 394
KVG+ + V++ ++ + + LS + E W + + EG +LEGTVK++ +GA +
Sbjct: 243 KVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVE 302
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEPGL 453
+ GL+HIS +S + + +++L GE+V+V V+ D +++LSI L+ +P +
Sbjct: 303 VL-PGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKALQEKPAV 361
>gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|383328526|ref|YP_005354410.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|415894979|ref|ZP_11550475.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|424786294|ref|ZP_18213084.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|424938690|ref|ZP_18354462.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|424956864|ref|ZP_18371621.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|424973500|ref|ZP_18386777.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|424980623|ref|ZP_18393405.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|424983213|ref|ZP_18395813.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|424986625|ref|ZP_18399034.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|424989623|ref|ZP_18401883.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|424998474|ref|ZP_18410158.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|425001445|ref|ZP_18412960.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|425011585|ref|ZP_18422476.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|425013337|ref|ZP_18424073.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|425020476|ref|ZP_18430780.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|425022907|ref|ZP_18433060.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|425031841|ref|ZP_18436942.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|427395181|ref|ZP_18888103.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430820410|ref|ZP_19439042.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430821943|ref|ZP_19440524.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430825063|ref|ZP_19443274.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430830280|ref|ZP_19448338.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430836240|ref|ZP_19454223.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430844532|ref|ZP_19462430.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430846512|ref|ZP_19464371.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430850112|ref|ZP_19467878.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430852811|ref|ZP_19470542.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430854381|ref|ZP_19472094.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430861941|ref|ZP_19479293.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430864427|ref|ZP_19480349.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430870377|ref|ZP_19483232.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430958937|ref|ZP_19486801.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|431193736|ref|ZP_19500243.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|431259185|ref|ZP_19505362.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|431295479|ref|ZP_19507367.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|431368570|ref|ZP_19509384.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|431436377|ref|ZP_19513076.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|431503059|ref|ZP_19515295.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|431539188|ref|ZP_19517692.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|431626809|ref|ZP_19523048.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|431743456|ref|ZP_19532335.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|431748753|ref|ZP_19537508.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|431754384|ref|ZP_19543045.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|431758862|ref|ZP_19547483.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|431766288|ref|ZP_19554781.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|431766752|ref|ZP_19555213.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|431770371|ref|ZP_19558771.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|431772892|ref|ZP_19561228.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|431776242|ref|ZP_19564509.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|431778301|ref|ZP_19566512.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|431782343|ref|ZP_19570478.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|431785272|ref|ZP_19573298.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|447912882|ref|YP_007394294.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|364091873|gb|EHM34296.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|378938220|gb|AFC63292.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|402923340|gb|EJX43637.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|402936419|gb|EJX55600.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|402944868|gb|EJX63257.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|402958458|gb|EJX75771.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|402966069|gb|EJX82740.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|402972211|gb|EJX88429.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|402976087|gb|EJX92008.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|402981505|gb|EJX97031.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|402982909|gb|EJX98342.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|402986636|gb|EJY01750.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|402996323|gb|EJY10715.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|403001339|gb|EJY15400.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|403009171|gb|EJY22635.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|403011657|gb|EJY24951.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|403014602|gb|EJY27590.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|425724317|gb|EKU87201.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430439541|gb|ELA49877.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430443775|gb|ELA53737.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430446564|gb|ELA56232.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430482882|gb|ELA59981.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430488597|gb|ELA65259.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430497122|gb|ELA73181.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430536144|gb|ELA76521.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430538959|gb|ELA79228.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430541645|gb|ELA81790.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430548040|gb|ELA87945.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430549232|gb|ELA89064.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430553974|gb|ELA93648.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430556622|gb|ELA96119.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|430559030|gb|ELA98412.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430572146|gb|ELB11012.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|430577280|gb|ELB15885.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|430581569|gb|ELB20014.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|430584158|gb|ELB22508.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|430586974|gb|ELB25208.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|430587682|gb|ELB25903.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|430594451|gb|ELB32420.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|430603063|gb|ELB40606.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|430606888|gb|ELB44225.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|430613079|gb|ELB50102.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|430618978|gb|ELB55806.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|430626989|gb|ELB63532.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|430627064|gb|ELB63600.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|430631987|gb|ELB68278.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|430635298|gb|ELB71394.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|430637408|gb|ELB73424.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|430641576|gb|ELB77377.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|430643847|gb|ELB79550.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|430647678|gb|ELB83119.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|430647759|gb|ELB83198.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|445188591|gb|AGE30233.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
Length = 409
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 44/259 (16%)
Query: 228 MVRGKMGIVKDDDAIAMSGGSG-----PGRP-----------VVETGTVL---FAEVLGR 268
+V+G++ +++D I G+G P + VV+ G VL +G+
Sbjct: 29 VVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVISTIGK 88
Query: 269 TL-SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+G LLS RRL K W + + Q + IE T GGL+ + G+R F+P +
Sbjct: 89 DKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVPASM 147
Query: 328 LLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREG 376
+ V +F++ K G+ + +I I N LILS + + EG
Sbjct: 148 VEDHFVADFSDYK---GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL--NEGERVKVLVVKS 434
+L G V ++ +GA + +G + GL+H+S +S + V SD+L N+ VKVL S
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGID--GLVHVSEISHSHVAKPSDVLAVNDDVNVKVL---S 259
Query: 435 MFP--DKISLSIADLESEP 451
+ P +++SLSI D + P
Sbjct: 260 INPEQERVSLSIKDTQPGP 278
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 10/119 (8%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGTVKKIYPYGAQIRI 395
V + V++ IN + + LS ++ W+ ++ + GT+L+GTVK++ +GA + +
Sbjct: 249 VNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV 308
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD--KISLSIADLESEPG 452
GL+HIS +S + + ++L+EG+ VKV V++ + P+ +I+LSI LE +P
Sbjct: 309 F-PGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLE-IHPEEHRIALSIKALEEKPA 365
>gi|167766775|ref|ZP_02438828.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1]
gi|317499056|ref|ZP_07957337.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|429762300|ref|ZP_19294696.1| S1 RNA binding domain protein [Anaerostipes hadrus DSM 3319]
gi|167711529|gb|EDS22108.1| S1 RNA binding domain protein [Clostridium sp. SS2/1]
gi|316893706|gb|EFV15907.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|429181808|gb|EKY22946.1| S1 RNA binding domain protein [Anaerostipes hadrus DSM 3319]
Length = 235
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 14/174 (8%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRM 346
W+R+ Q+K+ + + + GG++ +EG+R F+P A LLS +L + + +
Sbjct: 34 WNRLEQMKEDGDVLALTVGGVVNGGVIVYVEGIRGFIP-ASLLS-TKYVEDLNVWLQKDV 91
Query: 347 YVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTVKKIYPYGAQIRIG 396
+I + + L+LS + L+ GT++EGTV+ I PYGA + IG
Sbjct: 92 EAKIITVEPEEQRLVLSAKAVEKEKERKERENKINELKVGTVVEGTVENIMPYGAFVDIG 151
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESE 450
D SGL+HIS +S+ RV S +++ EG+ V V ++K + K+SLSI LE +
Sbjct: 152 DG-ISGLVHISQLSQKRVKSPEEVVKEGDAVTVKIIK-VANGKVSLSIKALEDD 203
>gi|395204361|ref|ZP_10395301.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
gi|422440242|ref|ZP_16517056.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
gi|422471366|ref|ZP_16547866.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
gi|422572458|ref|ZP_16648028.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
Length = 498
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + QIK+ + + E GGL+ I GLR FLP + L
Sbjct: 115 GRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDI-GLRGFLPAS--LVE 171
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ VG+ + +I ++++ N+++LS R AW L++G + +
Sbjct: 172 MRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRQSFLHQLQKGQIRK 230
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 231 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRER 288
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 289 VSLSLKATQEDP 300
>gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118]
gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118]
Length = 399
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 260 VLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL 319
V+ A + G LLS RRL + W+ + + E I+ T+ GGL+ G+
Sbjct: 78 VVIARIGSDKEGGSYLLSQRRLEARRVWNEIEDKFKAGETIKAPVTQVVKGGLVVDA-GV 136
Query: 320 RAFLPKAELLSRVNNFTE-LKEKVGRRMYVQITRINEDTNDLILS-------EREA--WA 369
R F+P A ++S ++F E L + G+ + ++I I N LILS EREA A
Sbjct: 137 RGFVP-ASMVS--DHFVEDLNQFKGQELELKIVEIEPSDNRLILSRKELVQAEREAKRQA 193
Query: 370 TL-NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVK 428
+ L G ++EG V ++ +GA I +G + GL+H+S +S RV +D L G+ VK
Sbjct: 194 VMEKLVAGDVVEGKVARLTNFGAFIDLGGVD--GLVHVSEISYERVNKPADALKVGQEVK 251
Query: 429 VLVVK-SMFPDKISLSIADLESEP 451
V V+ +ISLSI EP
Sbjct: 252 VKVLSVDAEKGRISLSIKQTLPEP 275
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 341 KVGRRMYVQITRINEDTNDLILSER----EAWATL--NLREGTLLEGTVKKIYPYGAQIR 394
KVG+ + V++ ++ + + LS + E W + + EG +LEGTVK++ +GA +
Sbjct: 245 KVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVE 304
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEPGL 453
+ GL+HIS +S + + +++L GE+V+V V+ D +++LSI L+ +P +
Sbjct: 305 V-LPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKALQEKPAV 363
>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
Length = 499
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 250 PGRPVVETGTVLFAEVLGR-TLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
PG VV+ G + A VL + GR +LS +R + AW + QIK+ + + E
Sbjct: 74 PGE-VVKVGDDVEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDDGVVTGTVIEVV 132
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GGL+ I GLR FLP + L + +L+ VG+ + +I ++++ N+++LS R AW
Sbjct: 133 KGGLILDI-GLRGFLPAS--LVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLS-RRAW 188
Query: 369 ATLN-----------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L++G + G V I +GA + +G + GL+H+S +S +
Sbjct: 189 LEQTQSEVRTTFLKELQKGQVRSGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHP 246
Query: 418 SDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
S+++ G+ V V V+ M +++SLS+ + +P
Sbjct: 247 SEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDP 281
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,534,112,060
Number of Sequences: 23463169
Number of extensions: 325878401
Number of successful extensions: 934790
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 8691
Number of HSP's that attempted gapping in prelim test: 916724
Number of HSP's gapped (non-prelim): 15971
length of query: 483
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 336
effective length of database: 8,910,109,524
effective search space: 2993796800064
effective search space used: 2993796800064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)