Query 011538
Match_columns 483
No_of_seqs 275 out of 2322
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 2.2E-31 7.4E-36 266.7 26.5 216 171-465 5-233 (285)
2 3go5_A Multidomain protein wit 99.8 4.4E-20 1.5E-24 184.8 18.4 164 295-479 5-170 (285)
3 2khi_A 30S ribosomal protein S 99.7 4E-17 1.4E-21 142.4 11.7 88 371-459 26-115 (115)
4 1kl9_A Eukaryotic translation 99.7 9.2E-18 3.1E-22 157.8 6.3 92 373-465 13-107 (182)
5 2a19_A EIF-2- alpha, eukaryoti 99.7 3.6E-17 1.2E-21 152.9 6.7 91 374-465 14-107 (175)
6 2eqs_A ATP-dependent RNA helic 99.7 2.5E-16 8.7E-21 134.8 9.4 87 370-457 7-96 (103)
7 2cqo_A Nucleolar protein of 40 99.6 2.1E-16 7.2E-21 138.9 7.8 87 371-457 18-107 (119)
8 2k4k_A GSP13, general stress p 99.6 8.3E-16 2.8E-20 136.9 9.7 82 372-454 4-86 (130)
9 1luz_A Protein K3, protein K2; 99.6 1.5E-15 5E-20 126.7 8.0 77 372-450 8-87 (88)
10 2k52_A Uncharacterized protein 99.6 1.7E-14 5.8E-19 117.7 11.2 74 372-450 2-76 (80)
11 1q8k_A Eukaryotic translation 99.5 3.2E-15 1.1E-19 150.9 6.2 93 372-465 10-105 (308)
12 1kl9_A Eukaryotic translation 99.5 4.2E-17 1.4E-21 153.4 -7.3 118 295-416 14-143 (182)
13 3aev_A Translation initiation 99.5 9.7E-15 3.3E-19 145.4 7.4 93 373-465 9-103 (275)
14 2khj_A 30S ribosomal protein S 99.5 2E-14 7E-19 123.9 8.2 83 367-450 21-106 (109)
15 3cw2_C Translation initiation 99.4 1.3E-14 4.3E-19 144.0 1.9 93 371-464 7-102 (266)
16 1e3p_A Guanosine pentaphosphat 99.4 2.3E-15 7.8E-20 167.7 -5.7 132 302-460 617-755 (757)
17 4aid_A Polyribonucleotide nucl 99.4 3.5E-14 1.2E-18 157.2 0.0 90 371-461 633-722 (726)
18 3cdi_A Polynucleotide phosphor 99.3 2.4E-13 8.3E-18 150.9 0.0 91 371-462 623-713 (723)
19 2a19_A EIF-2- alpha, eukaryoti 99.3 4.2E-13 1.4E-17 125.4 -0.8 96 295-391 14-120 (175)
20 2khj_A 30S ribosomal protein S 99.2 8E-12 2.7E-16 107.6 7.1 89 277-367 13-103 (109)
21 1wi5_A RRP5 protein homolog; S 99.2 1.1E-11 3.8E-16 108.3 6.9 80 371-450 17-98 (119)
22 1go3_E DNA-directed RNA polyme 99.2 2.2E-11 7.6E-16 114.1 7.9 84 372-457 78-178 (187)
23 3psi_A Transcription elongatio 99.1 5.8E-11 2E-15 137.9 9.8 77 371-448 898-976 (1219)
24 1q8k_A Eukaryotic translation 99.1 2E-12 6.8E-17 130.6 -2.2 99 295-394 12-121 (308)
25 4ayb_E DNA-directed RNA polyme 99.1 9E-11 3.1E-15 109.4 8.8 84 372-457 78-177 (180)
26 1luz_A Protein K3, protein K2; 99.1 1.2E-10 4E-15 97.0 6.7 70 295-367 10-84 (88)
27 2khi_A 30S ribosomal protein S 99.1 7.8E-11 2.7E-15 102.4 5.9 89 277-367 12-103 (115)
28 2k4k_A GSP13, general stress p 99.1 5.6E-10 1.9E-14 99.2 10.8 75 294-369 5-81 (130)
29 3bzc_A TEX; helix-turn-helix, 99.1 5.7E-11 2E-15 132.9 4.8 76 372-448 651-727 (785)
30 2nn6_I 3'-5' exoribonuclease C 99.0 2.8E-10 9.5E-15 109.1 8.1 77 372-448 78-164 (209)
31 2cqo_A Nucleolar protein of 40 99.0 1.1E-10 3.7E-15 102.4 4.8 81 286-367 12-97 (119)
32 2k52_A Uncharacterized protein 99.0 6.1E-10 2.1E-14 90.5 8.9 69 294-367 3-73 (80)
33 3psf_A Transcription elongatio 99.0 3.2E-11 1.1E-15 138.1 0.0 78 371-449 901-980 (1030)
34 3m7n_A Putative uncharacterize 99.0 5.4E-10 1.8E-14 104.5 8.3 72 372-448 55-135 (179)
35 3aev_A Translation initiation 99.0 5.1E-11 1.7E-15 118.6 0.4 100 294-394 9-119 (275)
36 2eqs_A ATP-dependent RNA helic 99.0 2E-09 7E-14 91.7 9.3 71 294-367 10-86 (103)
37 2b8k_G B16, DNA-directed RNA p 98.9 2.3E-09 7.7E-14 103.2 9.1 83 372-457 80-176 (215)
38 2z0s_A Probable exosome comple 98.9 1.1E-09 3.7E-14 106.7 6.9 75 372-447 63-141 (235)
39 2je6_I RRP4, exosome complex R 98.9 1.8E-09 6.1E-14 106.2 7.3 75 372-447 71-148 (251)
40 1y14_B B16, RPB7, DNA-directed 98.9 7.1E-09 2.4E-13 96.0 9.5 72 372-446 80-165 (171)
41 2ba0_A Archeal exosome RNA bin 98.8 7.5E-09 2.6E-13 100.4 9.6 75 372-447 54-129 (229)
42 2c35_B Human RPB7, DNA-directe 98.8 8E-09 2.7E-13 95.6 9.2 71 373-446 79-165 (172)
43 1hh2_P NUSA, N utilization sub 98.8 6.3E-09 2.1E-13 106.4 6.2 109 253-367 85-201 (344)
44 1hh2_P NUSA, N utilization sub 98.7 3.1E-08 1.1E-12 101.2 9.9 104 341-453 88-205 (344)
45 2bh8_A 1B11; transcription, mo 98.7 2.4E-08 8.1E-13 85.0 7.0 82 295-414 12-99 (101)
46 3cw2_C Translation initiation 98.7 1.2E-08 4E-13 101.1 5.5 72 294-366 9-84 (266)
47 3h0g_G DNA-directed RNA polyme 98.7 9.4E-09 3.2E-13 95.4 4.5 71 372-445 81-165 (172)
48 1wi5_A RRP5 protein homolog; S 98.7 1.4E-08 4.9E-13 88.5 4.8 74 293-367 18-95 (119)
49 1go3_E DNA-directed RNA polyme 98.6 5.1E-08 1.7E-12 91.2 7.3 73 294-367 79-168 (187)
50 4aid_A Polyribonucleotide nucl 98.6 8.5E-09 2.9E-13 114.4 0.3 100 268-369 605-710 (726)
51 3cdi_A Polynucleotide phosphor 98.5 1.4E-08 4.7E-13 113.0 0.0 99 268-368 595-699 (723)
52 4ayb_E DNA-directed RNA polyme 98.5 2.2E-07 7.6E-12 86.4 7.4 73 294-367 79-167 (180)
53 3psi_A Transcription elongatio 98.4 2.1E-07 7.1E-12 108.4 7.5 74 292-366 898-974 (1219)
54 2z0s_A Probable exosome comple 98.4 7.3E-07 2.5E-11 86.7 9.5 78 168-279 62-139 (235)
55 2nn6_I 3'-5' exoribonuclease C 98.4 4.1E-07 1.4E-11 87.0 7.3 73 294-367 79-163 (209)
56 2ba0_A Archeal exosome RNA bin 98.4 1.3E-06 4.5E-11 84.6 10.3 76 168-280 53-128 (229)
57 2je6_I RRP4, exosome complex R 98.4 9.6E-07 3.3E-11 86.7 9.1 79 167-280 69-147 (251)
58 3bzc_A TEX; helix-turn-helix, 98.3 2.2E-07 7.5E-12 104.1 4.3 72 294-366 652-725 (785)
59 2id0_A Exoribonuclease 2; RNAs 98.3 1.2E-06 4.1E-11 96.5 9.8 74 372-445 555-643 (644)
60 3psf_A Transcription elongatio 98.2 1.3E-07 4.4E-12 108.6 0.0 75 292-367 901-978 (1030)
61 3ayh_B DNA-directed RNA polyme 98.2 1.9E-06 6.6E-11 81.9 7.9 61 373-435 79-158 (203)
62 2c35_B Human RPB7, DNA-directe 98.2 1.8E-06 6E-11 79.8 7.5 72 295-366 80-165 (172)
63 1e3p_A Guanosine pentaphosphat 98.2 4.5E-08 1.5E-12 109.4 -4.6 97 269-367 634-742 (757)
64 3m7n_A Putative uncharacterize 98.2 2.9E-06 9.7E-11 79.2 8.2 67 294-367 56-134 (179)
65 2bx2_L Ribonuclease E, RNAse E 98.2 3.4E-06 1.2E-10 90.4 9.2 73 372-445 42-126 (517)
66 1y14_B B16, RPB7, DNA-directed 98.2 2.9E-06 9.9E-11 78.3 7.1 63 295-358 82-155 (171)
67 2asb_A Transcription elongatio 98.1 7E-06 2.4E-10 80.3 9.8 77 169-289 4-90 (251)
68 2b8k_G B16, DNA-directed RNA p 98.1 3.2E-06 1.1E-10 81.2 6.6 70 295-366 82-165 (215)
69 2nn6_H Exosome complex exonucl 98.1 4E-06 1.4E-10 84.6 6.3 74 372-446 92-175 (308)
70 2ckz_B C25, DNA-directed RNA p 98.0 6.6E-06 2.2E-10 79.2 7.4 62 373-435 79-154 (218)
71 3h0g_G DNA-directed RNA polyme 98.0 1.4E-06 5E-11 80.6 2.5 72 295-367 83-167 (172)
72 2wp8_J Exosome complex exonucl 98.0 5.5E-06 1.9E-10 95.1 7.1 70 376-445 887-977 (977)
73 2vnu_D Exosome complex exonucl 98.0 6.1E-06 2.1E-10 92.5 7.0 69 377-445 671-760 (760)
74 2ja9_A Exosome complex exonucl 97.9 2.9E-05 1E-09 72.2 8.8 74 372-446 4-77 (175)
75 1k0r_A NUSA; two component arr 97.9 3.2E-05 1.1E-09 79.5 9.6 70 170-283 128-207 (366)
76 1k0r_A NUSA; two component arr 97.8 1.5E-05 5E-10 82.0 6.1 78 372-455 127-211 (366)
77 2ja9_A Exosome complex exonucl 97.7 0.00015 5.1E-09 67.5 10.2 72 168-278 3-75 (175)
78 2asb_A Transcription elongatio 97.6 0.00016 5.3E-09 70.8 8.3 68 373-446 5-81 (251)
79 2nn6_H Exosome complex exonucl 97.4 0.00014 4.9E-09 73.2 5.6 85 168-280 91-175 (308)
80 2id0_A Exoribonuclease 2; RNAs 97.4 0.0006 2E-08 75.1 10.5 70 294-364 556-642 (644)
81 2bh8_A 1B11; transcription, mo 97.3 0.00046 1.6E-08 58.4 6.9 39 294-332 59-99 (101)
82 3ayh_B DNA-directed RNA polyme 97.2 0.00056 1.9E-08 64.9 6.6 62 295-357 80-161 (203)
83 2bx2_L Ribonuclease E, RNAse E 97.1 0.00081 2.8E-08 72.1 8.0 70 295-365 44-126 (517)
84 2nn6_G Exosome complex exonucl 97.1 0.001 3.5E-08 66.4 7.7 71 372-444 124-194 (289)
85 2nn6_G Exosome complex exonucl 96.9 0.0028 9.5E-08 63.3 9.6 72 168-278 123-194 (289)
86 2ckz_B C25, DNA-directed RNA p 96.9 0.0011 3.6E-08 63.7 6.4 65 295-359 80-159 (218)
87 2vnu_D Exosome complex exonucl 96.7 0.003 1E-07 70.8 8.8 70 295-365 668-760 (760)
88 2wp8_J Exosome complex exonucl 96.4 0.0039 1.3E-07 71.7 7.0 70 295-365 885-977 (977)
89 3d0f_A Penicillin-binding 1 tr 91.7 0.44 1.5E-05 40.0 7.1 57 373-430 31-93 (106)
90 2r7d_A Ribonuclease II family 89.8 0.53 1.8E-05 49.8 7.2 58 374-444 402-460 (469)
91 2rf4_A DNA-directed RNA polyme 88.3 1.3 4.5E-05 42.0 8.1 66 372-438 126-203 (214)
92 2rf4_A DNA-directed RNA polyme 88.0 0.99 3.4E-05 42.8 7.0 63 295-358 128-204 (214)
93 1jjg_A M156R; beta barrel, S1 87.7 1.7 5.7E-05 36.1 7.2 63 372-436 29-93 (102)
94 4b9w_A TDRD1, tudor domain-con 86.8 19 0.00065 33.1 15.4 170 161-396 4-177 (201)
95 4b9x_A TDRD1, tudor domain-con 79.7 40 0.0014 31.5 16.5 171 161-397 4-178 (226)
96 1wfq_A UNR protein; beta-barre 78.0 26 0.0009 28.4 11.0 68 373-447 13-83 (89)
97 2k5n_A Putative cold-shock pro 75.1 27 0.00091 27.4 9.7 61 379-447 3-65 (74)
98 2ytx_A Cold shock domain-conta 72.8 10 0.00036 31.3 7.1 51 376-432 16-67 (97)
99 2yty_A Cold shock domain-conta 71.3 8.9 0.00031 31.2 6.3 52 375-432 15-67 (88)
100 1jjg_A M156R; beta barrel, S1 69.7 15 0.00053 30.4 7.2 58 295-355 31-93 (102)
101 3h8z_A FragIle X mental retard 68.9 11 0.00036 33.1 6.6 58 375-432 14-72 (128)
102 3i4o_A Translation initiation 66.1 8.8 0.0003 30.8 5.0 61 378-443 15-77 (79)
103 1h95_A CSD, Y-box binding prot 65.8 26 0.00089 27.7 7.8 62 377-439 7-70 (79)
104 3d0f_A Penicillin-binding 1 tr 64.5 18 0.00062 29.8 7.0 56 293-349 30-93 (106)
105 2yty_A Cold shock domain-conta 60.2 10 0.00036 30.8 4.6 52 296-352 15-68 (88)
106 1c9o_A CSPB, cold-shock protei 60.1 51 0.0017 24.9 8.3 54 379-438 2-57 (66)
107 3cam_A Cold-shock domain famil 59.3 55 0.0019 24.9 8.4 56 380-440 3-60 (67)
108 3h8z_A FragIle X mental retard 58.9 91 0.0031 27.1 10.9 85 295-397 13-100 (128)
109 2r7d_A Ribonuclease II family 57.3 20 0.00068 37.7 7.3 58 295-363 402-459 (469)
110 3i2z_B RNA chaperone, negative 56.9 36 0.0012 26.2 7.0 55 378-438 5-62 (71)
111 2kcm_A Cold shock domain famil 56.1 37 0.0013 26.6 7.0 62 380-447 2-66 (74)
112 1c9o_A CSPB, cold-shock protei 54.4 34 0.0012 25.9 6.4 48 300-352 2-53 (66)
113 3a0j_A Cold shock protein; OB- 52.2 75 0.0026 24.5 8.2 50 379-433 2-53 (73)
114 1d7q_A Translation initiation 51.9 59 0.002 28.9 8.4 68 373-446 27-96 (143)
115 3i2z_B RNA chaperone, negative 50.9 37 0.0013 26.2 6.2 49 299-352 5-58 (71)
116 1h95_A CSD, Y-box binding prot 48.8 40 0.0014 26.6 6.2 53 298-352 7-65 (79)
117 1yez_A MM1357; MAR30, autostru 48.0 50 0.0017 24.9 6.5 46 295-354 12-58 (68)
118 3cam_A Cold-shock domain famil 47.6 41 0.0014 25.6 5.9 48 300-352 2-54 (67)
119 3aqq_A Calcium-regulated heat 46.6 85 0.0029 27.9 8.6 54 375-434 59-114 (147)
120 1wfq_A UNR protein; beta-barre 46.6 1.1E+02 0.0039 24.6 10.0 35 172-206 15-50 (89)
121 3aqq_A Calcium-regulated heat 46.4 46 0.0016 29.7 6.8 53 295-353 58-114 (147)
122 3ts2_A Protein LIN-28 homolog 46.1 47 0.0016 29.4 6.9 51 298-353 8-70 (148)
123 3a0j_A Cold shock protein; OB- 45.5 31 0.0011 26.8 5.0 48 300-352 2-53 (73)
124 1g6p_A Cold shock protein TMCS 45.4 25 0.00086 26.7 4.4 48 380-432 2-51 (66)
125 1yvc_A MRR5; structure, autost 44.8 56 0.0019 24.9 6.3 46 295-354 14-60 (70)
126 3i4o_A Translation initiation 44.1 28 0.00095 27.9 4.5 60 297-362 13-76 (79)
127 2k5n_A Putative cold-shock pro 41.2 72 0.0024 24.9 6.5 47 299-352 2-52 (74)
128 3ts2_A Protein LIN-28 homolog 40.2 1.7E+02 0.0057 25.7 9.6 70 377-452 8-87 (148)
129 1g6p_A Cold shock protein TMCS 39.9 21 0.00071 27.2 3.1 47 301-352 2-52 (66)
130 2kcm_A Cold shock domain famil 34.3 51 0.0017 25.8 4.6 47 301-351 2-52 (74)
131 2dgy_A MGC11102 protein; EIF-1 34.1 77 0.0026 26.8 6.0 63 377-445 15-80 (111)
132 1cuk_A RUVA protein; DNA repai 34.1 97 0.0033 28.8 7.3 50 378-435 4-53 (203)
133 1fr3_A MOP, molybdate/tungstat 32.9 66 0.0023 23.3 4.9 48 377-432 7-59 (67)
134 3ulj_A LIN28B, DNA-binding pro 32.9 1.2E+02 0.0043 24.5 6.9 49 299-352 8-68 (90)
135 2ph7_A Uncharacterized protein 30.4 7.8 0.00027 37.0 -0.9 49 19-71 65-120 (246)
136 2ytx_A Cold shock domain-conta 29.8 42 0.0014 27.6 3.6 50 297-351 16-67 (97)
137 1x65_A UNR protein; cell-free 29.7 21 0.0007 29.1 1.6 49 377-432 7-56 (89)
138 1gut_A Mopii, molybdate bindin 29.1 68 0.0023 23.5 4.4 49 377-432 7-60 (68)
139 2eqj_A Metal-response element- 27.4 2.1E+02 0.0073 22.0 8.6 52 248-328 7-61 (66)
140 2wac_A CG7008-PA; unknown func 24.8 2.5E+02 0.0085 25.2 8.4 97 296-396 65-164 (218)
141 2lss_A Cold shock-like protein 29.3 17 0.00058 28.1 0.0 50 299-352 4-57 (70)
142 1cuk_A RUVA protein; DNA repai 23.5 2.4E+02 0.0081 26.1 7.9 49 299-355 4-54 (203)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.2e-31 Score=266.71 Aligned_cols=216 Identities=14% Similarity=0.089 Sum_probs=184.1
Q ss_pred CCCcEEEEEEEEEeCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccCCCCC
Q 011538 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGP 250 (483)
Q Consensus 171 k~GdiV~G~Vv~V~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~~~~~ 250 (483)
.+|++++|+|+++++.|+||++| +.+|+||.+|+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~-------------------------------------------- 39 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQ-------------------------------------------- 39 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCC--------------------------------------------
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCc--------------------------------------------
Confidence 47999999999999999999998 899999998872
Q ss_pred CCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhHHHHHHhhCCCeEEEEEEEEE-CCeEEEEECC--eEEEeeccc
Q 011538 251 GRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN-TGGLLTRIEG--LRAFLPKAE 327 (483)
Q Consensus 251 ~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~~~~~~~w~~L~~~~k~GeiV~GkV~~v~-k~G~fV~I~G--i~gFVP~Se 327 (483)
. ++||+|+|+|+ .|.++++++|++.+ | ++.|++++|+|++++ ++|+||++++ .+||||.|+
T Consensus 40 --~--~vGdevev~v~-~d~~~r~iat~~~p-----~------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~se 103 (285)
T 3go5_A 40 --H--TVGDTVKGFAY-TDMKQKLRLTTLEV-----T------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDI 103 (285)
T ss_dssp --C--CTTSEEEEEEE-ECTTSCEEEECSCC-----C------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGG
T ss_pred --c--ccCCEEEEEEE-ECCCCCEEEecccc-----c------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHH
Confidence 1 58999999999 57889999998754 2 479999999999999 7999999974 899999999
Q ss_pred c-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh-----Hhhh--cCCCCCcEEEEEEEEEeCceEEE-EECCC
Q 011538 328 L-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-----AWAT--LNLREGTLLEGTVKKIYPYGAQI-RIGDS 398 (483)
Q Consensus 328 l-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~-----~~e~--~~l~vG~iv~G~V~~I~~~GaFV-~I~~~ 398 (483)
+ |.+. ....+|+++.++ +.+|+ ++||.+|+|+ +|.. ..+++|++|+|+|++++++|+|| .+.+
T Consensus 104 l~~~~~-----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~- 175 (285)
T 3go5_A 104 LPELKE-----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN- 175 (285)
T ss_dssp SCSSGG-----GSCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTT-
T ss_pred CCcccc-----cccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC-
Confidence 9 5332 123799999776 69998 7899999863 4543 47999999999999999999999 9987
Q ss_pred ceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeC-CCeEEEEEecCCCCcCcccccccccceee
Q 011538 399 NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF-PDKISLSIADLESEPGLFVSDKEVHIIFL 465 (483)
Q Consensus 399 gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vde-k~rI~LSLK~~~~dPw~~l~~k~~V~~~~ 465 (483)
++.||||.||++ +.+++||+|+|+|+++++ ++||+||+|++..++|+..+ +.|+++|
T Consensus 176 g~~Glih~SEl~--------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a--~~il~~L 233 (285)
T 3go5_A 176 NMLGFIHPSERY--------AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDA--QMILTYL 233 (285)
T ss_dssp TEEEEECGGGCS--------SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHH--HHHHHHH
T ss_pred CeEEEEEHHHcc--------ccCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHH--HHHHHHH
Confidence 799999999997 469999999999999985 89999999999998886543 4444443
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.84 E-value=4.4e-20 Score=184.84 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=139.9
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhhhcCCC
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLR 374 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e~~~l~ 374 (483)
..|++++|+|++++++|+||+++|.+||||.+++.. .+|++|+|.|+ .| ..+|+++|++.++ ++
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~g~egllp~se~~~----------~vGdevev~v~-~d-~~~r~iat~~~p~----~~ 68 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQH----------TVGDTVKGFAY-TD-MKQKLRLTTLEVT----AT 68 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGCCC----------CTTSEEEEEEE-EC-TTSCEEEECSCCC----SC
T ss_pred cCCCEEEEEEEEEECCEEEEEcCCeEEEEEHHHCcc----------ccCCEEEEEEE-EC-CCCCEEEeccccc----cc
Confidence 479999999999999999999999999999999842 48999999997 45 4668888987664 78
Q ss_pred CCcEEEEEEEEEe-CceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC-CCCcC
Q 011538 375 EGTLLEGTVKKIY-PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL-ESEPG 452 (483)
Q Consensus 375 vG~iv~G~V~~I~-~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~-~~dPw 452 (483)
+|+++.|+|++++ ++||||+++..+++||||.|+++|.+. ..+++||.|.|+ +.+|.++||.||+|+. ..+||
T Consensus 69 ~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~-l~iD~~~Ri~ls~k~~~~~~~~ 143 (285)
T 3go5_A 69 QDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE----LWPKKGDQLYIR-LEVDKKDRIWGLLAYQEDFQRL 143 (285)
T ss_dssp SSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG----GSCCTTCEEEEE-EEECTTSCEEEEECCHHHHHHH
T ss_pred CCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc----cccCCCCEEEEE-EEECCCCcEEEEehhhhhcchh
Confidence 9999999999999 799999997414899999999998654 347999999766 5788788999999987 57899
Q ss_pred cccccccccceeeEEEEeecccceEEE
Q 011538 453 LFVSDKEVHIIFLFILLFNKQYSVWFL 479 (483)
Q Consensus 453 ~~l~~k~~V~~~~~~~~~~~~~~~~~~ 479 (483)
.....++++++.+.-.+.+....-.|.
T Consensus 144 ~~~~~~~~~G~~V~g~V~~i~~~G~fV 170 (285)
T 3go5_A 144 ARPAYNNMQNQNWPAIVYRLKLSGTFV 170 (285)
T ss_dssp CCCCCSCCTTCEEEEEEEEEETTEEEE
T ss_pred hhhhhhCCCCCEEEEEEEEEeCCcEEE
Confidence 999999999999977777765555553
No 3
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.71 E-value=4e-17 Score=142.37 Aligned_cols=88 Identities=28% Similarity=0.438 Sum_probs=82.3
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcc-cccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~-~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
..+++|+++.|+|++|+++|+||+|++ +++||||+++++|+ +..++.+.|++||.|+|+|++++ +++||.||+|++.
T Consensus 26 ~~~~~G~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~~ 104 (115)
T 2khi_A 26 KRYPEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCK 104 (115)
T ss_dssp CSSCSSCEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCCCC
T ss_pred hcCCCCCEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEecC
Confidence 478999999999999999999999987 79999999999984 78889999999999999999998 5899999999999
Q ss_pred CCcCccccccc
Q 011538 449 SEPGLFVSDKE 459 (483)
Q Consensus 449 ~dPw~~l~~k~ 459 (483)
+|||+.+.++|
T Consensus 105 ~~p~~~~~~~~ 115 (115)
T 2khi_A 105 ANPWQQFAETH 115 (115)
T ss_dssp SSCCCCCCCCC
T ss_pred cCHHHHHHhhC
Confidence 99999998765
No 4
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.70 E-value=9.2e-18 Score=157.84 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=75.4
Q ss_pred CCCCcEEEEEEEEEeCceEEEEE--CCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCCC
Q 011538 373 LREGTLLEGTVKKIYPYGAQIRI--GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLES 449 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaFV~I--~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~~ 449 (483)
+++|+++.|+|++|++||+||+| .+ +++||||+|+|+|+++.++++.+++||.|+|+|+++| +++||.||+|++.+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~-g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~ 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYN-NIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTT-TEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCC-CcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 48999999999999999999999 45 7999999999999999999999999999999999998 78999999999999
Q ss_pred CcCcccccccccceee
Q 011538 450 EPGLFVSDKEVHIIFL 465 (483)
Q Consensus 450 dPw~~l~~k~~V~~~~ 465 (483)
+||..+.++|++++.+
T Consensus 92 ~p~~~~~~~~~~g~~v 107 (182)
T 1kl9_A 92 EEAIKCEDKFTKSKTV 107 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhccCCCEE
Confidence 9999999999988775
No 5
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.67 E-value=3.6e-17 Score=152.94 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=78.3
Q ss_pred CCCcEEEEEEEEEeCceEEEEEC--CCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCCCC
Q 011538 374 REGTLLEGTVKKIYPYGAQIRIG--DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESE 450 (483)
Q Consensus 374 ~vG~iv~G~V~~I~~~GaFV~I~--~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~~d 450 (483)
++|+++.|+|++|++||+||+|. + +++||||+|+|+|+++.++++.+++||.|+|+|+++| +++||.||+|++.++
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~-gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYD-NIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTT-TCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCC-CcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 48999999999999999999994 5 7999999999999999999999999999999999998 789999999999999
Q ss_pred cCcccccccccceee
Q 011538 451 PGLFVSDKEVHIIFL 465 (483)
Q Consensus 451 Pw~~l~~k~~V~~~~ 465 (483)
||..+.+++++++.+
T Consensus 93 ~~~~~~~~~~~g~~v 107 (175)
T 2a19_A 93 DIIKCEEKYQKSKTV 107 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccCCCcc
Confidence 999999999988765
No 6
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=134.76 Aligned_cols=87 Identities=31% Similarity=0.484 Sum_probs=79.2
Q ss_pred hcCCCCCcEEEEEEEEEeCceEEEEECCC--ceEEEEeccCc-CcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEec
Q 011538 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDS--NRSGLLHISNM-SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD 446 (483)
Q Consensus 370 ~~~l~vG~iv~G~V~~I~~~GaFV~I~~~--gi~GLlhiSel-s~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~ 446 (483)
...+++|+++.|+|++|++||+||+|++. +++||||+|++ ++.++.++.+.|++||.|+|+|++++. +||.||+|+
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~ 85 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMKD 85 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEESTT
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEee
Confidence 44689999999999999999999999852 68999999999 677888999999999999999999986 699999999
Q ss_pred CCCCcCccccc
Q 011538 447 LESEPGLFVSD 457 (483)
Q Consensus 447 ~~~dPw~~l~~ 457 (483)
+.++||+.+..
T Consensus 86 ~~~~~~~~~~~ 96 (103)
T 2eqs_A 86 VDQETGEDLNP 96 (103)
T ss_dssp BCTTTCCBCCS
T ss_pred cccCCchhcCc
Confidence 99999998764
No 7
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=138.86 Aligned_cols=87 Identities=28% Similarity=0.361 Sum_probs=79.4
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CC--CeEEEEEecC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FP--DKISLSIADL 447 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek--~rI~LSLK~~ 447 (483)
..+++|+++.|+|++|++||+||+|.+.+++||||+++++|.++.++.+.|++||.|+|+|++++ ++ ++|.||+|++
T Consensus 18 ~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~ 97 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVV 97 (119)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTB
T ss_pred cccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEeec
Confidence 36889999999999999999999996534699999999999999999999999999999999998 33 6999999999
Q ss_pred CCCcCccccc
Q 011538 448 ESEPGLFVSD 457 (483)
Q Consensus 448 ~~dPw~~l~~ 457 (483)
.++||+.+..
T Consensus 98 ~~~~~~~~~~ 107 (119)
T 2cqo_A 98 NQGTGKDLDP 107 (119)
T ss_dssp CSSSCCBSCT
T ss_pred ccCCccccCc
Confidence 9999998865
No 8
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.62 E-value=8.3e-16 Score=136.95 Aligned_cols=82 Identities=29% Similarity=0.470 Sum_probs=78.1
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCCCC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESE 450 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~~d 450 (483)
.+++|+++.|+|++|++||+||+|.+ +++||||++++++.++.++.+.|++||.|+|+|++++ ++++|.||+|++.++
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 68899999999999999999999987 7999999999999999999999999999999999998 589999999999999
Q ss_pred cCcc
Q 011538 451 PGLF 454 (483)
Q Consensus 451 Pw~~ 454 (483)
||..
T Consensus 83 p~~~ 86 (130)
T 2k4k_A 83 PEKK 86 (130)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9863
No 9
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.60 E-value=1.5e-15 Score=126.74 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCC-ceEEEEecc-CcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHIS-NMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~-gi~GLlhiS-els~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
..++|+++.|+|+ |++||+||+|.+. +++||+|+| +++|+++.++++.+ +||+|+|+|+++| +++||.||+|++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~ 85 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 4689999999999 9999999999742 699999999 99999999999999 9999999999998 6899999999987
Q ss_pred CC
Q 011538 449 SE 450 (483)
Q Consensus 449 ~d 450 (483)
+|
T Consensus 86 ~~ 87 (88)
T 1luz_A 86 RH 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 10
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.56 E-value=1.7e-14 Score=117.68 Aligned_cols=74 Identities=27% Similarity=0.451 Sum_probs=67.1
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCCCC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESE 450 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~~d 450 (483)
++++|+++.|+|++++++|+||+|++ +++||+|+|+++|.++ +.|++||.|+|+|++++ +++||.||+|++.+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~~ 76 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEHH 76 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC--
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeecccc
Confidence 47899999999999999999999998 7999999999998775 78999999999999998 569999999988764
No 11
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.54 E-value=3.2e-15 Score=150.95 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=87.4
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEC--CCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIG--DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~--~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
.+++|+++.|+|++|++||+||+|+ + +++||||+|+++|+++.++.+.|++||.|.|+|+++| ++++|.||+|++.
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~-gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYN-NIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTT-SCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCC-CeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 4579999999999999999999997 4 7999999999999999999999999999999999998 6899999999999
Q ss_pred CCcCcccccccccceee
Q 011538 449 SEPGLFVSDKEVHIIFL 465 (483)
Q Consensus 449 ~dPw~~l~~k~~V~~~~ 465 (483)
++||..+.+++++++.+
T Consensus 89 ~~p~~~~~~~~~~G~~v 105 (308)
T 1q8k_A 89 PEEAIKCEDKFTKSKTV 105 (308)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHccCCCee
Confidence 99999999999888765
No 12
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.54 E-value=4.2e-17 Score=153.38 Aligned_cols=118 Identities=12% Similarity=0.227 Sum_probs=96.2
Q ss_pred hCCCeEEEEEEEEECCeEEEEE---CCeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh----
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I---~Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~---- 366 (483)
+.|+++.|+|+++.++|+||++ +|++||||.|+| +.++.++.+.. .+||.|.|+|+++|+++++|.||+|+
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~-~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLI-RIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhc-CCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 6899999999999999999999 689999999999 77888888775 89999999999999999999999996
Q ss_pred Hhhh--cCCCCCcEEEEEEEEEeC-ceEEEEECCCceEEEEeccCcCcc-cccC
Q 011538 367 AWAT--LNLREGTLLEGTVKKIYP-YGAQIRIGDSNRSGLLHISNMSRT-RVTS 416 (483)
Q Consensus 367 ~~e~--~~l~vG~iv~G~V~~I~~-~GaFV~I~~~gi~GLlhiSels~~-~i~~ 416 (483)
+|.. ..+..|+.+.|+|+++++ || |.|.+ |++||+|+++++|. ++.+
T Consensus 93 p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~~~~~~ 143 (182)
T 1kl9_A 93 EAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFDDKYKR 143 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHHHHHTC
T ss_pred hHHHHHHhccCCCEEEEEEEEchhhcC--CcccC-ChhheEEeeecchhhhcCC
Confidence 3542 478899999999999998 99 78877 89999999998876 3455
No 13
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.52 E-value=9.7e-15 Score=145.39 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=86.0
Q ss_pred CCCCcEEEEEEEEEeCceEEEEECC-CceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCCCC
Q 011538 373 LREGTLLEGTVKKIYPYGAQIRIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESE 450 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaFV~I~~-~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~~d 450 (483)
.++|+++.|+|++|++||+||+|++ .|++||||+|+++|+++.++.+.+++||.|.|+|+++| ++++|.||+|++.++
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 4689999999999999999999973 27999999999999999999999999999999999998 689999999999999
Q ss_pred cCcccccccccceee
Q 011538 451 PGLFVSDKEVHIIFL 465 (483)
Q Consensus 451 Pw~~l~~k~~V~~~~ 465 (483)
||....++++.++.+
T Consensus 89 ~~~~~~~~~~~g~~v 103 (275)
T 3aev_A 89 QRKAKLQEFKRAQKA 103 (275)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccCCCeE
Confidence 999888888877654
No 14
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.52 E-value=2e-14 Score=123.87 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=75.5
Q ss_pred Hhhh--cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEE
Q 011538 367 AWAT--LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLS 443 (483)
Q Consensus 367 ~~e~--~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LS 443 (483)
+|+. ..+++|+++.|+|++|+++|+||+|++ +++||||++++++.++.++.+.|++||.|+|+|++++ ++++|.||
T Consensus 21 p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS 99 (109)
T 2khj_A 21 MFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLS 99 (109)
T ss_dssp CHHHHTTTCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred HHHHHhhcCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 4543 479999999999999999999999998 7999999999999999999999999999999999998 55799999
Q ss_pred EecCCCC
Q 011538 444 IADLESE 450 (483)
Q Consensus 444 LK~~~~d 450 (483)
+|++.++
T Consensus 100 ~k~~~~~ 106 (109)
T 2khj_A 100 VRAKDEA 106 (109)
T ss_dssp TTSSSSC
T ss_pred EeecChh
Confidence 9997653
No 15
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.45 E-value=1.3e-14 Score=143.97 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=86.1
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEC--CCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIG--DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADL 447 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~--~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~ 447 (483)
..+++|+++.|+|++|++||+||+|+ + +++||||+|+++|+++.++++.+++||.|.|+|++++ ++++|.||+|++
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~-~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYG-GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTT-SEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCC-CeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 35789999999999999999999997 5 7999999999999999999999999999999999998 589999999999
Q ss_pred CCCcCccccccccccee
Q 011538 448 ESEPGLFVSDKEVHIIF 464 (483)
Q Consensus 448 ~~dPw~~l~~k~~V~~~ 464 (483)
.++||..+.++++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~ 102 (266)
T 3cw2_C 86 TDDERRKKNLQWKKIQR 102 (266)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhccccCc
Confidence 99999998888877653
No 16
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.43 E-value=2.3e-15 Score=167.73 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=50.3
Q ss_pred EEEEE--EECCeEEEEECCeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhhhcCCCCCcE
Q 011538 302 VKFTE--WNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTL 378 (483)
Q Consensus 302 GkV~~--v~k~G~fV~I~Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e~~~l~vG~i 378 (483)
|++++ +.+.|++|+|+. +|.++.+.. +.......+ .+.. + . .+ ..+++|++
T Consensus 617 Gk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~~~~a~~-------~i~~-----------i--~--~p---~~~~vG~i 670 (757)
T 1e3p_A 617 RQMINQIQEDTGAEITIED-DGTIYIGAADGPAAEAARA-------TING-----------I--A--NP---TSPEVGER 670 (757)
T ss_dssp ----CTTCCCCCSCC---------CCCBSSHHHHCC--------------------------------------------
T ss_pred ceeeehhhHhhCCEEEecC-CceEEEecCCHHHHHHHHH-------HHHH-----------h--c--ch---hhcccccE
Confidence 55555 356799999975 888888877 222211100 0100 0 0 01 35789999
Q ss_pred EEEEEEEEeCceEEEEECCCceEEEEeccCc----CcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCCCCcCcc
Q 011538 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNM----SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454 (483)
Q Consensus 379 v~G~V~~I~~~GaFV~I~~~gi~GLlhiSel----s~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~~~dPw~~ 454 (483)
+.|+|++|++||+||+|.+ |++||||+|++ +|+++.++++.|++||+|+|+|+++|.++||.||+|++.++||..
T Consensus 671 ~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~pw~~ 749 (757)
T 1e3p_A 671 ILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVIEGEEAASD 749 (757)
T ss_dssp --CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSCC---------------
T ss_pred EEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEecCCCCchhh
Confidence 9999999999999999987 79999999999 999999999999999999999999988899999999999999998
Q ss_pred cccccc
Q 011538 455 VSDKEV 460 (483)
Q Consensus 455 l~~k~~ 460 (483)
...+|+
T Consensus 750 ~~~~~~ 755 (757)
T 1e3p_A 750 EKKDDA 755 (757)
T ss_dssp ------
T ss_pred hhhccc
Confidence 887764
No 17
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.38 E-value=3.5e-14 Score=157.25 Aligned_cols=90 Identities=32% Similarity=0.441 Sum_probs=0.0
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCCCC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESE 450 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~~~d 450 (483)
..+++|++|.|+|++|++||+||+|.+ +++||||+|+++|+++.++.+.|++||.|+|+|+++|.++||.||+|++.++
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEeecccC
Confidence 478999999999999999999999988 7999999999999999999999999999999999998889999999999999
Q ss_pred cCccccccccc
Q 011538 451 PGLFVSDKEVH 461 (483)
Q Consensus 451 Pw~~l~~k~~V 461 (483)
||+.+.+|.++
T Consensus 712 ~G~~~~~k~~~ 722 (726)
T 4aid_A 712 TGEDLSKKEAA 722 (726)
T ss_dssp -----------
T ss_pred cchhhhhhhhh
Confidence 99999888765
No 18
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.29 E-value=2.4e-13 Score=150.92 Aligned_cols=91 Identities=29% Similarity=0.462 Sum_probs=0.0
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCCCC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESE 450 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~~~d 450 (483)
.++++|++|.|+|++|++||+||+|.+ |++||||+|+++|+|+.++++.|++||.|+|+|+++|.++||.||+|++.++
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEeccCC
Confidence 368999999999999999999999987 7999999999999999999999999999999999998889999999999999
Q ss_pred cCcccccccccc
Q 011538 451 PGLFVSDKEVHI 462 (483)
Q Consensus 451 Pw~~l~~k~~V~ 462 (483)
||..++.....+
T Consensus 702 ~g~~~~p~~~~~ 713 (723)
T 3cdi_A 702 SQPAAAPEAPAA 713 (723)
T ss_dssp ------------
T ss_pred CCcccCccccch
Confidence 999887665544
No 19
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.25 E-value=4.2e-13 Score=125.36 Aligned_cols=96 Identities=13% Similarity=0.284 Sum_probs=79.7
Q ss_pred hCCCeEEEEEEEEECCeEEEEE---CCeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh----
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I---~Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~---- 366 (483)
+.|+++.|+|+++.++|+||++ +|++||||.|++ +.++.++.+.. .+||.|.|+|+++|+++++|.||+|+
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~-~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLI-RVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCC-CTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcC-CCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 4899999999999999999999 689999999999 77787877765 89999999999999999999999996
Q ss_pred Hhhh--cCCCCCcEEEEEEEEEe-CceE
Q 011538 367 AWAT--LNLREGTLLEGTVKKIY-PYGA 391 (483)
Q Consensus 367 ~~e~--~~l~vG~iv~G~V~~I~-~~Ga 391 (483)
+|.. ..++.|+.+.|+|++++ ++|+
T Consensus 93 ~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 93 DIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 4542 46889999999999998 7887
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.25 E-value=8e-12 Score=107.57 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=73.4
Q ss_pred EehHHHHHhhhHHHHHHhhCCCeEEEEEEEEECCeEEEEEC-CeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEE
Q 011538 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRIN 354 (483)
Q Consensus 277 S~k~~~~~~~w~~L~~~~k~GeiV~GkV~~v~k~G~fV~I~-Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID 354 (483)
|+|++. ..+|+.+...++.|+++.|+|+++.++|+||+++ |+.||||.+++ +.++.++.+.. .+||.|.|+|+++|
T Consensus 13 ~iKq~~-~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~-~vGd~V~v~V~~vd 90 (109)
T 2khj_A 13 GLVPRG-SHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVL-SVGDEVEAKFTGVD 90 (109)
T ss_dssp ---------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSC-CTTCEEEEEEEEEE
T ss_pred chhhcc-cCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhcc-CCCCEEEEEEEEEE
Confidence 445544 4599998888999999999999999999999996 89999999999 66666666654 89999999999999
Q ss_pred CCCCceeechhhH
Q 011538 355 EDTNDLILSEREA 367 (483)
Q Consensus 355 ~e~~rLiLS~K~~ 367 (483)
++++++.||+|..
T Consensus 91 ~~~~ki~LS~k~~ 103 (109)
T 2khj_A 91 RKNRAISLSVRAK 103 (109)
T ss_dssp TTTTEEEEETTSS
T ss_pred CCCCEEEEEEeec
Confidence 9888999999864
No 21
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.22 E-value=1.1e-11 Score=108.26 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=66.9
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCc-CcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM-SRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSel-s~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
.++++|+++.|+|++|++||+||+|+..+..|++|.+++ +|.++.++.+.|++||.|+|+|++++ ++++|.||+|+..
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 478999999999999999999999983256777666664 35556688999999999999999998 6789999999765
Q ss_pred CC
Q 011538 449 SE 450 (483)
Q Consensus 449 ~d 450 (483)
-.
T Consensus 97 l~ 98 (119)
T 1wi5_A 97 VS 98 (119)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 22
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.20 E-value=2.2e-11 Score=114.13 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCccccc-----------CcccccCCCCEEEEEEEEEe-CC--
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT-----------SVSDLLNEGERVKVLVVKSM-FP-- 437 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~-----------~~~~~~kvGd~VkVkVi~vd-ek-- 437 (483)
..++|+++.|+|++++++|+||++++ .+||+|+|+++++++. ++.+.|++||.|+|+|++++ ++
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~--~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP--LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS--SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC--ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 46799999999999999999999974 8999999999988775 78899999999999999998 33
Q ss_pred ---CeEEEEEecCCCCcCccccc
Q 011538 438 ---DKISLSIADLESEPGLFVSD 457 (483)
Q Consensus 438 ---~rI~LSLK~~~~dPw~~l~~ 457 (483)
++|.||+|+...-|+..+..
T Consensus 156 p~~~~I~lS~k~~~LG~~~w~~~ 178 (187)
T 1go3_E 156 KRGSKIALTMRQPYLGKLEWIEE 178 (187)
T ss_dssp ---CEEEEECCSTTCEEHHHHHH
T ss_pred CCccEEEEEEcCCCCCcHHHHhh
Confidence 49999999976656554544
No 23
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.15 E-value=5.8e-11 Score=137.86 Aligned_cols=77 Identities=8% Similarity=0.119 Sum_probs=72.7
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCccc-ccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~-i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
..+++|+++.|+|++|++||+||+|+. |++||||+|+|+|++ +.++.+.|++||.|+|+|+++| +++||.||||...
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 976 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 976 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTT-SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHH
Confidence 478999999999999999999999987 899999999999998 8999999999999999999998 8899999999654
No 24
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.14 E-value=2e-12 Score=130.58 Aligned_cols=99 Identities=13% Similarity=0.256 Sum_probs=88.4
Q ss_pred hCCCeEEEEEEEEECCeEEEEEC---CeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh----
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~---Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~---- 366 (483)
+.|+++.|+|+++.++|+||+++ |+.||||.|++ +.++.++.+.. ++||.|.|+|+++|++++++.||+|.
T Consensus 12 ~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~-kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLI-RIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp SSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTC-SSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhc-CCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 58999999999999999999994 79999999999 77788887765 89999999999999999999999985
Q ss_pred Hhhh--cCCCCCcEEEEEEEEEeC-ceEEEE
Q 011538 367 AWAT--LNLREGTLLEGTVKKIYP-YGAQIR 394 (483)
Q Consensus 367 ~~e~--~~l~vG~iv~G~V~~I~~-~GaFV~ 394 (483)
+|.. ..+++|+++.|+|+++.+ ||+|++
T Consensus 91 p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 4543 368899999999999998 699864
No 25
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.14 E-value=9e-11 Score=109.44 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc-----------cCcccccCCCCEEEEEEEEEe-C---
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-----------TSVSDLLNEGERVKVLVVKSM-F--- 436 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i-----------~~~~~~~kvGd~VkVkVi~vd-e--- 436 (483)
+..+|++++|+|++++++|+||++++ .+||+|+++++++++ ++..+.+++||.|+|||++++ +
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~~--~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLGP--MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS--SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred eccCCCEEEEEEeeeccceEEEEECC--ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 46799999999999999999999974 799999999999877 577889999999999999997 2
Q ss_pred -CCeEEEEEecCCCCcCccccc
Q 011538 437 -PDKISLSIADLESEPGLFVSD 457 (483)
Q Consensus 437 -k~rI~LSLK~~~~dPw~~l~~ 457 (483)
..||.||||+...-|++.+++
T Consensus 156 ~~~rI~ls~k~~gLG~~~W~~~ 177 (180)
T 4ayb_E 156 RLPRIALTMRQPYLGKLEWITQ 177 (180)
T ss_dssp ---CEEEECCSTTCEEHHHHTT
T ss_pred ccCcEEEEcCCCCCCCChhHhh
Confidence 359999999855444333443
No 26
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.09 E-value=1.2e-10 Score=97.00 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=63.1
Q ss_pred hCCCeEEEEEEEEECCeEEEEEC---CeEEEeecc-cc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhH
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKA-EL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~---Gi~gFVP~S-el-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~ 367 (483)
+.|++++|+|+ +.++|+||+++ |++||+|.| ++ ++++.++++.. +||+|+++|+++|++++++.||+|+.
T Consensus 10 ~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~--~Gd~V~VkV~~vd~~~~kI~lslk~~ 84 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL--VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH--TTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe--CCCEEEEEEEEEECCCCEEEEEEeec
Confidence 68999999999 99999999994 799999999 99 66776777764 99999999999999999999999864
No 27
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.09 E-value=7.8e-11 Score=102.44 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=69.8
Q ss_pred EehHHHHHhhhHHHHHHhhCCCeEEEEEEEEECCeEEEEEC-CeEEEeecccc-c-cccCChhhhhhhcCCEEEEEEEEE
Q 011538 277 STRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-L-SRVNNFTELKEKVGRRMYVQITRI 353 (483)
Q Consensus 277 S~k~~~~~~~w~~L~~~~k~GeiV~GkV~~v~k~G~fV~I~-Gi~gFVP~Sel-~-~rv~~~~~l~~~VGq~V~vkVl~I 353 (483)
|+|... ...|..+...++.|+++.|+|+++.++|+||+++ |+.||||.+++ + .+..++.+.. .+||.|+|+|+++
T Consensus 12 ~~k~~~-~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~-~vGd~V~vkV~~v 89 (115)
T 2khi_A 12 SGLVPR-GSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVV-NVGDVVEVMVLDI 89 (115)
T ss_dssp ----------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTC-CTTCEEEEEEEEE
T ss_pred chhhcc-cCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEE-CCCCEEEEEEEEE
Confidence 344433 4578777667899999999999999999999995 79999999999 4 2555555544 8999999999999
Q ss_pred ECCCCceeechhhH
Q 011538 354 NEDTNDLILSEREA 367 (483)
Q Consensus 354 D~e~~rLiLS~K~~ 367 (483)
|.++++|.||+|..
T Consensus 90 d~~~~rI~lslk~~ 103 (115)
T 2khi_A 90 DEERRRISLGLKQC 103 (115)
T ss_dssp ETTTTEEEECCCCC
T ss_pred ECCCCEEEEEEEec
Confidence 99899999999863
No 28
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.08 E-value=5.6e-10 Score=99.21 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=67.6
Q ss_pred hhCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhh
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e 369 (483)
++.|+++.|+|+++.++|+||++ +|+.||||.+++ +.++.++.+.. .+||.|.|+|+++|.++++|.||++....
T Consensus 5 ~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~-~vGd~V~vkV~~vd~~~~kI~LSlk~~~~ 81 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHL-SVGDEVQVKVLAVDEEKGKISLSIRATQA 81 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTC-CTTCEEEEEEEEEETTTTEEEEESHHHHH
T ss_pred CCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccC-CCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 57899999999999999999999 689999999999 67777777654 89999999999999989999999998654
No 29
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.06 E-value=5.7e-11 Score=132.87 Aligned_cols=76 Identities=32% Similarity=0.530 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
++++|+++.|+|++|++||+||+|+. +++||||+|+|+|.++.++.+.|++||.|+|+|+++| ++++|.||+|...
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSS-SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCC-CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 68899999999999999999999987 7999999999999999999999999999999999998 7899999999654
No 30
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.05 E-value=2.8e-10 Score=109.07 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECC-------CceEEEEeccCcCccccc--CcccccCCCCEEEEEEEEEeC-CCeEE
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGD-------SNRSGLLHISNMSRTRVT--SVSDLLNEGERVKVLVVKSMF-PDKIS 441 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~-------~gi~GLlhiSels~~~i~--~~~~~~kvGd~VkVkVi~vde-k~rI~ 441 (483)
.+++|++|.|+|++|+++|+||+|.+ .+.+|+||++|+++.+.. ++.+.|++||.|.|+|+++++ ++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 57899999999999999999999852 157999999999999888 999999999999999999975 45899
Q ss_pred EEEecCC
Q 011538 442 LSIADLE 448 (483)
Q Consensus 442 LSLK~~~ 448 (483)
||+|+..
T Consensus 158 LS~k~~~ 164 (209)
T 2nn6_I 158 LTTAENE 164 (209)
T ss_dssp EECCSSS
T ss_pred EEEecCC
Confidence 9999754
No 31
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=102.39 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=69.3
Q ss_pred hhHHHHHHhhCCCeEEEEEEEEECCeEEEEECC--eEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCC--Cce
Q 011538 286 AWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEG--LRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDT--NDL 360 (483)
Q Consensus 286 ~w~~L~~~~k~GeiV~GkV~~v~k~G~fV~I~G--i~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~--~rL 360 (483)
.|+.+....+.|+++.|+|+++.++|+||+++| +.||||.+++ +.++.++.+.. .+||.|.|+|+++|..+ ++|
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~-~~Gd~V~VkV~~vd~~~~~~~i 90 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIV-DVGDKVWVKLIGREMKNDRIKV 90 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHC-CTTCEEEEEEEEEEECSSCEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcC-CCCCEEEEEEEEEeccccCceE
Confidence 455555567899999999999999999999976 4999999999 67777777764 89999999999999754 699
Q ss_pred eechhhH
Q 011538 361 ILSEREA 367 (483)
Q Consensus 361 iLS~K~~ 367 (483)
.||+|..
T Consensus 91 ~LSlk~~ 97 (119)
T 2cqo_A 91 SLSMKVV 97 (119)
T ss_dssp EEESTTB
T ss_pred EEEEeec
Confidence 9999974
No 32
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.04 E-value=6.1e-10 Score=90.54 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=60.7
Q ss_pred hhCCCeEEEEEEEEECCeEEEEEC-CeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhH
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~-Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~ 367 (483)
++.|+++.|+|+++.++|+||+++ ++.||+|.|++ +.++ +. ..+||.|+|+|+++|++++++.||+++.
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~---~~--~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL---EN--LNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG---GG--CCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc---ee--eCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 468999999999999999999996 89999999999 4443 22 2799999999999999889999999865
No 33
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.2e-11 Score=138.07 Aligned_cols=78 Identities=8% Similarity=0.113 Sum_probs=0.0
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCccc-ccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCC
Q 011538 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (483)
Q Consensus 371 ~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~-i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~ 448 (483)
..+++|+++.|+|++|++||+||+|+. |++||||+|+|++.+ +.++.+.|++||.|+|+|+++| +++||.||||+..
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 979 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 979 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCC-CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHH
Confidence 478999999999999999999999987 899999999999998 8999999999999999999998 8899999999765
Q ss_pred C
Q 011538 449 S 449 (483)
Q Consensus 449 ~ 449 (483)
-
T Consensus 980 l 980 (1030)
T 3psf_A 980 V 980 (1030)
T ss_dssp -
T ss_pred h
Confidence 3
No 34
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.01 E-value=5.4e-10 Score=104.53 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCC---------ceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEE
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDS---------NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~---------gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~L 442 (483)
..+ |++|.|+|++|+++|+||+|... +.+|+||+|++++.++.++.+.|++||.|.|+|++ +++.|
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~L 129 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRL 129 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEE
Confidence 357 99999999999999999999752 58999999999999999999999999999999996 89999
Q ss_pred EEecCC
Q 011538 443 SIADLE 448 (483)
Q Consensus 443 SLK~~~ 448 (483)
|+|+..
T Consensus 130 S~k~~~ 135 (179)
T 3m7n_A 130 STKEEE 135 (179)
T ss_dssp ECCSTT
T ss_pred EEecCC
Confidence 999743
No 35
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.99 E-value=5.1e-11 Score=118.60 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=87.4
Q ss_pred hhCCCeEEEEEEEEECCeEEEEEC---CeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh---
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE--- 366 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~---Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~--- 366 (483)
.+.|+++.|+|+++.++|+||+++ |+.||||.|++ +.++.++.+.. .+||.|.|+|+++|++++++.||+|.
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~-kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYL-KEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTC-CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhcc-CCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 358999999999999999999995 89999999999 67788887765 89999999999999999999999986
Q ss_pred -Hhhh--cCCCCCcEEEEEEEEEe-CceEEEE
Q 011538 367 -AWAT--LNLREGTLLEGTVKKIY-PYGAQIR 394 (483)
Q Consensus 367 -~~e~--~~l~vG~iv~G~V~~I~-~~GaFV~ 394 (483)
+|.. ..++.|+.+.|+|..+. ++|++++
T Consensus 88 ~~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 88 QQRKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred chhHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 3432 36788999999999998 8888665
No 36
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2e-09 Score=91.73 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=62.7
Q ss_pred hhCCCeEEEEEEEEECCeEEEEEC----CeEEEeecccc-c-cccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhH
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIE----GLRAFLPKAEL-L-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~----Gi~gFVP~Sel-~-~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~ 367 (483)
.+.|+++.|+|+++.++|+||+++ ++.||||.|++ + .++.++.+.. .+||.|+|+|+++|+ ++|.||+|..
T Consensus 10 ~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~-~~Gd~V~VkV~~vd~--~~i~LSlk~~ 86 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVV-SKGQRVKVKVLSFTG--TKTSLSMKDV 86 (103)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHC-CTTCEEEEEEEEEET--TEEEEESTTB
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEe-CCCCEEEEEEEEEEC--CeeEEEEeec
Confidence 578999999999999999999997 79999999999 4 4566776654 899999999999996 5999999974
No 37
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.92 E-value=2.3e-09 Score=103.18 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCc----------ccccCCCCEEEEEEEEEe-CC---
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV----------SDLLNEGERVKVLVVKSM-FP--- 437 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~----------~~~~kvGd~VkVkVi~vd-ek--- 437 (483)
..++|++++|+|++|+++|+||+++. .+||+|+|+|++.+.-++ .+.+++||.|+|+|++++ ++
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 35799999999999999999999975 799999999986533222 267999999999999998 44
Q ss_pred CeEEEEEecCCCCcCccccc
Q 011538 438 DKISLSIADLESEPGLFVSD 457 (483)
Q Consensus 438 ~rI~LSLK~~~~dPw~~l~~ 457 (483)
.+|. |||+...-||+....
T Consensus 158 ~~Ig-Smk~~~LG~~~~~~~ 176 (215)
T 2b8k_G 158 HAIG-SIKEDYLGAISHEKR 176 (215)
T ss_dssp EEEE-ECCSTTCEEC-----
T ss_pred EEEE-EcCCCCCCCcchhhH
Confidence 3777 999887777764443
No 38
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.92 E-value=1.1e-09 Score=106.66 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=67.8
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcc----cccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT----RVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~----~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~ 447 (483)
.+++|++|.|+|+++.++|+||+|+. ..+|+||+++++.. +..++++.|++||.|.|+|+++++.+++.||+|+.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecc
Confidence 57899999999999999999999987 68999999999863 45778889999999999999998777999999864
No 39
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.89 E-value=1.8e-09 Score=106.17 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc---cCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV---TSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i---~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~ 447 (483)
..++|++|.|+|+++.++|+||+|++ ..+|+||++++++.+. .++++.|++||.|.|+|+++++.+++.||+|+.
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 46899999999999999999999987 6899999999998877 888999999999999999998778999999864
No 40
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.85 E-value=7.1e-09 Score=95.97 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=56.9
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc----cCc------ccccCCCCEEEEEEEEEe-CCC--
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV----TSV------SDLLNEGERVKVLVVKSM-FPD-- 438 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i----~~~------~~~~kvGd~VkVkVi~vd-ek~-- 438 (483)
...+|++++|+|+++++||+||+++. .+||+|+|+|++.+. .++ ++.+++||.|+|||++++ +++
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCc
Confidence 35699999999999999999999985 899999999975422 111 267999999999999998 443
Q ss_pred -eEEEEEec
Q 011538 439 -KISLSIAD 446 (483)
Q Consensus 439 -rI~LSLK~ 446 (483)
++. ||++
T Consensus 158 ~~ig-sm~~ 165 (171)
T 1y14_B 158 HAIG-SIKE 165 (171)
T ss_dssp EEEE-ECCS
T ss_pred EEEE-EcCC
Confidence 444 5553
No 41
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.84 E-value=7.5e-09 Score=100.39 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcc-cccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~-~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~ 447 (483)
..++||+|.|+|+++.++|+||+|+. ...|+||+++++.. +..++++.|++||.|.|+|+++++++++.||+|+.
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~ 129 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDR 129 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 46899999999999999999999987 58999999999964 67889999999999999999998778999999874
No 42
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.83 E-value=8e-09 Score=95.58 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=57.3
Q ss_pred CCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc----c--------CcccccCCCCEEEEEEEEEe-CCC-
Q 011538 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV----T--------SVSDLLNEGERVKVLVVKSM-FPD- 438 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i----~--------~~~~~~kvGd~VkVkVi~vd-ek~- 438 (483)
..+|++++|+|++++++|+||+++. .+||+|+|+|++.+. . +....+++||.|+|||+++| +++
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~~--~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 156 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIGP--MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND 156 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECC--EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCC
Confidence 3589999999999999999999974 679999999975422 2 12557999999999999998 444
Q ss_pred --eEEEEEec
Q 011538 439 --KISLSIAD 446 (483)
Q Consensus 439 --rI~LSLK~ 446 (483)
++. |||+
T Consensus 157 ~~~ig-sm~~ 165 (172)
T 2c35_B 157 IFAIG-SLMD 165 (172)
T ss_dssp EEEEE-ECCS
T ss_pred cEEEE-EecC
Confidence 555 7765
No 43
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.75 E-value=6.3e-09 Score=106.37 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=80.4
Q ss_pred CcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhH----HHHHHhh--CCCeEEEEEEEEECCeEEEEECCeEEEeecc
Q 011538 253 PVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWH----RVRQIKQ--LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326 (483)
Q Consensus 253 ~~~kVGd~V~v~Vi~~d~~G~iiLS~k~~~~~~~w~----~L~~~~k--~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~S 326 (483)
+.+++||.+.+.|...+.++....+.|+....+..+ .+.+.++ .|++|+|+|.++.++|++|++|+++|+||.+
T Consensus 85 ~~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~s 164 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKK 164 (344)
T ss_dssp TTCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGG
T ss_pred ccccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHH
Confidence 347899999999876554444445556554322111 1223333 8999999999999999999999999999999
Q ss_pred ccccccCChhhhhhhcCCEEEEEEEEEECCC--CceeechhhH
Q 011538 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDT--NDLILSEREA 367 (483)
Q Consensus 327 el~~rv~~~~~l~~~VGq~V~vkVl~ID~e~--~rLiLS~K~~ 367 (483)
++.. .+. +.+|++|+|+|+++++.+ .++.|||+.+
T Consensus 165 E~ip-----~E~-~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p 201 (344)
T 1hh2_P 165 EWIP-----GEE-IKAGDLVKVYIIDVVKTTKGPKILVSRRVP 201 (344)
T ss_dssp GSCT-----TCC-CCTTCEEEEEEEEEEEETTEEEEEEESSSH
T ss_pred HcCC-----CcC-CCCCCEEEEEEEEEEcCCCCcEEEEEeecc
Confidence 9941 122 269999999999999654 3899999854
No 44
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.71 E-value=3.1e-08 Score=101.24 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=78.3
Q ss_pred hcCCEEEEEEEEEECCCCceeechhhHh-h----------hcC--CCCCcEEEEEEEEEeCceEEEEECCCceEEEEecc
Q 011538 341 KVGRRMYVQITRINEDTNDLILSEREAW-A----------TLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHIS 407 (483)
Q Consensus 341 ~VGq~V~vkVl~ID~e~~rLiLS~K~~~-e----------~~~--l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiS 407 (483)
.+|+.+.+.|...|.. ++...+.|+.+ + ... .++|+++.|+|.+++++|+||+++ +.+|+||.+
T Consensus 88 ~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG--k~EgiLp~s 164 (344)
T 1hh2_P 88 EVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG--KLETRLPKK 164 (344)
T ss_dssp CTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET--TEEEEEEGG
T ss_pred cCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC--CeEEEEeHH
Confidence 6999999999877643 34455545432 1 023 348999999999999999999997 589999999
Q ss_pred CcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCCCCcCc
Q 011538 408 NMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESEPGL 453 (483)
Q Consensus 408 els~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~~~~dPw~ 453 (483)
|++ |.+.|++||+|+|.|++++ +++...+++....++...
T Consensus 165 E~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk 205 (344)
T 1hh2_P 165 EWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVI 205 (344)
T ss_dssp GSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHH
T ss_pred HcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHH
Confidence 996 5688999999999999997 455444444444444433
No 45
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.69 E-value=2.4e-08 Score=85.03 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=64.0
Q ss_pred hCCCeEEEEEEEEE---CCeEEEEE--CCeEEEeeccccc-cccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHh
Q 011538 295 QLNEPIEVKFTEWN---TGGLLTRI--EGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368 (483)
Q Consensus 295 k~GeiV~GkV~~v~---k~G~fV~I--~Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~ 368 (483)
+.++.++|+|+..+ .+| |+.. +|.++|+|.+.+. ..+
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~------------------------------------ 54 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA------------------------------------ 54 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC------------------------------------
T ss_pred cccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc------------------------------------
Confidence 46778999999995 358 5554 4599999999983 211
Q ss_pred hhcCCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc
Q 011538 369 ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV 414 (483)
Q Consensus 369 e~~~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i 414 (483)
....+++|++|+++|.++++||+||+|.+ +++||||+|+++|.++
T Consensus 55 ~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 VRGNPQQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCCCCCTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEECCC
T ss_pred cccCCCCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCccCcC
Confidence 01257899999999999999999999987 7999999999999865
No 46
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.68 E-value=1.2e-08 Score=101.13 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=66.1
Q ss_pred hhCCCeEEEEEEEEECCeEEEEE---CCeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I---~Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~ 366 (483)
.+.|+++.|+|+++.++|+||++ +|+.||||.|++ +.++.++.+.. .+||.|.|+|+++|++++++.||+|.
T Consensus 9 ~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~-~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVL-KENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp CCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHS-CTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhC-cCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 47899999999999999999999 579999999999 77888887765 89999999999999889999999984
No 47
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.68 E-value=9.4e-09 Score=95.40 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=58.0
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCccccc----------CcccccCCCCEEEEEEEEEe-CCC--
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT----------SVSDLLNEGERVKVLVVKSM-FPD-- 438 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~----------~~~~~~kvGd~VkVkVi~vd-ek~-- 438 (483)
...+|++++|+|++++++|+||+++. .+||+|+|+|++.+.- +..+.+++||.|+|||++++ +.+
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~~--~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIGP--LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBTT--BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeCC--eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 35689999999999999999999974 6799999999765432 33578999999999999998 443
Q ss_pred -eEEEEEe
Q 011538 439 -KISLSIA 445 (483)
Q Consensus 439 -rI~LSLK 445 (483)
+|. |||
T Consensus 159 ~~Ig-tm~ 165 (172)
T 3h0g_G 159 FAIA-TMK 165 (172)
T ss_dssp EEEE-ECC
T ss_pred eEEE-EcC
Confidence 455 555
No 48
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.66 E-value=1.4e-08 Score=88.47 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=60.9
Q ss_pred HhhCCCeEEEEEEEEECCeEEEEEC--CeEEEeecccc--ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhH
Q 011538 293 IKQLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAEL--LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (483)
Q Consensus 293 ~~k~GeiV~GkV~~v~k~G~fV~I~--Gi~gFVP~Sel--~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~ 367 (483)
.++.|++++|+|+++.++|+||+++ ++.||+|.+++ +.++.++.+.. .+||.|+|+|+++|++++++.||+++.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKL-KVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCC-CTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEe-CCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 3579999999999999999999997 68888888876 22222333433 799999999999999889999999864
No 49
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.61 E-value=5.1e-08 Score=91.19 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=60.9
Q ss_pred hhCCCeEEEEEEEEECCeEEEEECCeEEEeecccc-ccccC-----------ChhhhhhhcCCEEEEEEEEEECCCC---
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN-----------NFTELKEKVGRRMYVQITRINEDTN--- 358 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel-~~rv~-----------~~~~l~~~VGq~V~vkVl~ID~e~~--- 358 (483)
...|+++.|+|+++.++|+||++++++||+|.|++ +.++. +..+. ..+|+.|+|+|+++|...+
T Consensus 79 ~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 79 PEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKV-LEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCE-ECTTCEEEEEEEEEECCC----
T ss_pred cCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeE-EcCCCEEEEEEEEEEcccCCCC
Confidence 46899999999999999999999889999999999 44432 33333 3799999999999998654
Q ss_pred --ceeechhhH
Q 011538 359 --DLILSEREA 367 (483)
Q Consensus 359 --rLiLS~K~~ 367 (483)
++.||++.+
T Consensus 158 ~~~I~lS~k~~ 168 (187)
T 1go3_E 158 GSKIALTMRQP 168 (187)
T ss_dssp -CEEEEECCST
T ss_pred ccEEEEEEcCC
Confidence 999999863
No 50
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.56 E-value=8.5e-09 Score=114.41 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=3.5
Q ss_pred EcCCCcEEEEeh-HHH---HHhhhHHHHHHhhCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-ccccCChhhhhhh
Q 011538 268 RTLSGRPLLSTR-RLF---RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRVNNFTELKEK 341 (483)
Q Consensus 268 ~d~~G~iiLS~k-~~~---~~~~w~~L~~~~k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-~~rv~~~~~l~~~ 341 (483)
++.+|++.++.. +.. ....|+.+...++.|++++|+|+++.++|+||++ +|++||||.|++ +.++.++.+.. +
T Consensus 605 i~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~-k 683 (726)
T 4aid_A 605 INDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVL-K 683 (726)
T ss_dssp ---------CCSCHHHHHHHHHC---------------------------------------------------------
T ss_pred EECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccC-C
Confidence 345677755443 221 2245677777789999999999999999999999 579999999999 77888888775 8
Q ss_pred cCCEEEEEEEEEECCCCceeechhhHhh
Q 011538 342 VGRRMYVQITRINEDTNDLILSEREAWA 369 (483)
Q Consensus 342 VGq~V~vkVl~ID~e~~rLiLS~K~~~e 369 (483)
+||.|+|+|+++|+ +++|.||+|....
T Consensus 684 vGD~V~VkVi~iD~-~grI~LS~K~~~~ 710 (726)
T 4aid_A 684 EGQMVKVKLLGFDD-RGKTKLSMKVVDQ 710 (726)
T ss_dssp ----------------------------
T ss_pred CCCEEEEEEEEECC-CCcEEEEEeeccc
Confidence 99999999999997 7899999997643
No 51
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.50 E-value=1.4e-08 Score=112.99 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred EcCCCcEEEEehHHHH----HhhhHHHHHHhhCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-ccccCChhhhhhh
Q 011538 268 RTLSGRPLLSTRRLFR----KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRVNNFTELKEK 341 (483)
Q Consensus 268 ~d~~G~iiLS~k~~~~----~~~w~~L~~~~k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-~~rv~~~~~l~~~ 341 (483)
.+.+|.+.++...... ...++.+....+.|++++|+|+++.++|+||++ +|++||||.|++ +.++.++.+.. +
T Consensus 595 I~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~-~ 673 (723)
T 3cdi_A 595 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL-Q 673 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCccccc-C
Confidence 3456777766543322 234555556678999999999999999999999 479999999999 77888877765 8
Q ss_pred cCCEEEEEEEEEECCCCceeechhhHh
Q 011538 342 VGRRMYVQITRINEDTNDLILSEREAW 368 (483)
Q Consensus 342 VGq~V~vkVl~ID~e~~rLiLS~K~~~ 368 (483)
+||.|+|+|+++|+ +++|.||+|...
T Consensus 674 vGd~V~VkVi~vd~-~grI~LS~k~~~ 699 (723)
T 3cdi_A 674 MGQEVPVKVLEVDR-QGRIRLSIKEAT 699 (723)
T ss_dssp ---------------------------
T ss_pred CCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 99999999999998 899999999753
No 52
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.47 E-value=2.2e-07 Score=86.39 Aligned_cols=73 Identities=8% Similarity=0.213 Sum_probs=59.2
Q ss_pred hhCCCeEEEEEEEEECCeEEEEECCeEEEeecccc-cccc-----------CChhhhhhhcCCEEEEEEEEEECC----C
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRV-----------NNFTELKEKVGRRMYVQITRINED----T 357 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel-~~rv-----------~~~~~l~~~VGq~V~vkVl~ID~e----~ 357 (483)
...|++++|+|++++++|+||++++++|++|.+++ ++++ ++.... ..+|+.|++||+++|.+ .
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~-~~~Gd~VrvkV~~v~~~~~~~~ 157 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKV-IQKGDKVRARVISVASTVTGRL 157 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCC-CCTTCEEEEEEEEECC------
T ss_pred ccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeE-ECCCCEEEEEEEEEeCCCCccc
Confidence 46899999999999999999999999999999999 4443 222333 37999999999999864 3
Q ss_pred CceeechhhH
Q 011538 358 NDLILSEREA 367 (483)
Q Consensus 358 ~rLiLS~K~~ 367 (483)
.+|.+|+|++
T Consensus 158 ~rI~ls~k~~ 167 (180)
T 4ayb_E 158 PRIALTMRQP 167 (180)
T ss_dssp -CEEEECCST
T ss_pred CcEEEEcCCC
Confidence 4899999974
No 53
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.1e-07 Score=108.41 Aligned_cols=74 Identities=8% Similarity=0.076 Sum_probs=66.5
Q ss_pred HHhhCCCeEEEEEEEEECCeEEEEEC-CeEEEeecccc-ccc-cCChhhhhhhcCCEEEEEEEEEECCCCceeechhh
Q 011538 292 QIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (483)
Q Consensus 292 ~~~k~GeiV~GkV~~v~k~G~fV~I~-Gi~gFVP~Sel-~~r-v~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~ 366 (483)
+.++.|+++.|+|+++.++|+||+++ |+.|+||.|++ +.+ +.++.+.. .+||.|+|+|++||.++++|.||+|.
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~-kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIY-EIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTS-CTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcC-CCCCEEEEEEEEEECCCCEEEEEecH
Confidence 34689999999999999999999996 89999999999 555 57777765 89999999999999999999999885
No 54
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.40 E-value=7.3e-07 Score=86.65 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=63.2
Q ss_pred cCCCCCcEEEEEEEEEeCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccCC
Q 011538 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (483)
Q Consensus 168 ~~ik~GdiV~G~Vv~V~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~~ 247 (483)
+.+++||+|.|+|+++.++++||++|.+.+|+||++|+...+ .+ + +
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~-~~-----------~---------------~------- 107 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP-FN-----------P---------------A------- 107 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC-CC-----------T---------------T-------
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCc-cc-----------c---------------c-------
Confidence 678999999999999999999999999999999999986321 00 0 0
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEeh
Q 011538 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279 (483)
Q Consensus 248 ~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k 279 (483)
..+....+++||.|.|+|+..+.++++.||++
T Consensus 108 ~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k 139 (235)
T 2z0s_A 108 VDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQ 139 (235)
T ss_dssp TTCCTTSSCTTCEEEEEEEEECTTSCEEEECC
T ss_pred hhhHhhcCCCCCEEEEEEEEECCCCcEEEEEe
Confidence 01124568999999999999887889999986
No 55
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.39 E-value=4.1e-07 Score=87.03 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=63.4
Q ss_pred hhCCCeEEEEEEEEECCeEEEEEC---------CeEEEeecccc-ccccC--ChhhhhhhcCCEEEEEEEEEECCCCcee
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIE---------GLRAFLPKAEL-LSRVN--NFTELKEKVGRRMYVQITRINEDTNDLI 361 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~---------Gi~gFVP~Sel-~~rv~--~~~~l~~~VGq~V~vkVl~ID~e~~rLi 361 (483)
.+.|++|.|+|+++.++|+||+|+ +++|+||.+++ +.+.. ++.+.+ .+||.|.|+|++++..++++.
T Consensus 79 p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l-~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 79 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSF-RPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTC-CSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhc-CCCCEEEEEEEEEeCCCCeEE
Confidence 579999999999999999999995 56899999999 55555 666664 899999999999997777899
Q ss_pred echhhH
Q 011538 362 LSEREA 367 (483)
Q Consensus 362 LS~K~~ 367 (483)
||.|..
T Consensus 158 LS~k~~ 163 (209)
T 2nn6_I 158 LTTAEN 163 (209)
T ss_dssp EECCSS
T ss_pred EEEecC
Confidence 999865
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.37 E-value=1.3e-06 Score=84.62 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=63.1
Q ss_pred cCCCCCcEEEEEEEEEeCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccCC
Q 011538 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (483)
Q Consensus 168 ~~ik~GdiV~G~Vv~V~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~~ 247 (483)
|.+++||+|.|+|+++.+++++|+++....|+||++|+....+ .
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~----------~-------------------------- 96 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKP----------N-------------------------- 96 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCT----------T--------------------------
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHcccccc----------c--------------------------
Confidence 5689999999999999999999999999999999999862100 0
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 011538 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (483)
Q Consensus 248 ~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~ 280 (483)
.+..+.+++||.|.|+|+..+.++.+.||++.
T Consensus 97 -~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~ 128 (229)
T 2ba0_A 97 -KKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128 (229)
T ss_dssp -SCGGGTCCTTCEEEEEEEEECTTCCEEEECCS
T ss_pred -cchhcccCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 01134589999999999998888999999864
No 57
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.35 E-value=9.6e-07 Score=86.71 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=64.2
Q ss_pred ccCCCCCcEEEEEEEEEeCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccC
Q 011538 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (483)
Q Consensus 167 ~~~ik~GdiV~G~Vv~V~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~ 246 (483)
.|.+++||+|.|+|+++.++++||++|...+|+||++|+...+ .++ +
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~------------~~~---------------~------ 115 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRS------------INV---------------G------ 115 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC------------CCT---------------T------
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCc------------ccc---------------c------
Confidence 4678999999999999999999999999999999999985321 000 0
Q ss_pred CCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 011538 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (483)
Q Consensus 247 ~~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~ 280 (483)
.+....+++||.|.|+|+..+.++++.||++.
T Consensus 116 --~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 116 --EDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp --CCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred --cchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 11235689999999999998878899999864
No 58
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.33 E-value=2.2e-07 Score=104.12 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=65.9
Q ss_pred hhCCCeEEEEEEEEECCeEEEEEC-CeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhh
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~-Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~ 366 (483)
++.|++++|+|+++.++|+||+++ +++||||.|+| +.++.++.+.. .+||.|+|+|+++|.++++|.||+|.
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~-~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVV-KAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHC-CTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhhee-CCCCEEEEEEEEEECCCCEEEEEEec
Confidence 579999999999999999999996 68999999999 66777887765 89999999999999999999999984
No 59
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.32 E-value=1.2e-06 Score=96.52 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=62.7
Q ss_pred CCCCCc--EEEEEEEEEeCceEEEEECCCceEEEEeccCcCc--ccc--c--------CcccccCCCCEEEEEEEEEe-C
Q 011538 372 NLREGT--LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSR--TRV--T--------SVSDLLNEGERVKVLVVKSM-F 436 (483)
Q Consensus 372 ~l~vG~--iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~--~~i--~--------~~~~~~kvGd~VkVkVi~vd-e 436 (483)
.-++|+ +++|+|++|+++|+||+|.+.|++||||+|++++ +++ . +....|++||+|+|+|+++| +
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 457899 9999999999999999996558999999999973 321 1 44577999999999999998 7
Q ss_pred CCeEEEEEe
Q 011538 437 PDKISLSIA 445 (483)
Q Consensus 437 k~rI~LSLK 445 (483)
+++|.+++-
T Consensus 635 ~~~I~~~l~ 643 (644)
T 2id0_A 635 TRSIIARPV 643 (644)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEEEc
Confidence 899999874
No 60
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.3e-07 Score=108.59 Aligned_cols=75 Identities=8% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHhhCCCeEEEEEEEEECCeEEEEEC-CeEEEeecccc-ccc-cCChhhhhhhcCCEEEEEEEEEECCCCceeechhhH
Q 011538 292 QIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (483)
Q Consensus 292 ~~~k~GeiV~GkV~~v~k~G~fV~I~-Gi~gFVP~Sel-~~r-v~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~ 367 (483)
+.++.|+++.|+|+++.++|+||+++ |+.|+||.|++ +.+ +.++.+.. .+||.|+|+|++||.++++|.||+|..
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~-kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIY-EIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcC-CCCCEEEEEEEEEECCCCEEEEEechH
Confidence 34589999999999999999999996 89999999999 555 57777765 899999999999999999999999864
No 61
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.23 E-value=1.9e-06 Score=81.90 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc-------------------cCcccccCCCCEEEEEEEE
Q 011538 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-------------------TSVSDLLNEGERVKVLVVK 433 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i-------------------~~~~~~~kvGd~VkVkVi~ 433 (483)
-.+|+++.|+|++++++|+||+++ .++|++|.+++.++++ ++....+++||.|++||++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 468999999999999999999995 4899999999987654 4556679999999999999
Q ss_pred Ee
Q 011538 434 SM 435 (483)
Q Consensus 434 vd 435 (483)
++
T Consensus 157 v~ 158 (203)
T 3ayh_B 157 ED 158 (203)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 62
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.23 E-value=1.8e-06 Score=79.76 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=54.5
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeeccccccc-----cCC-------hhhhhhhcCCEEEEEEEEEECCCC--ce
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-----VNN-------FTELKEKVGRRMYVQITRINEDTN--DL 360 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel~~r-----v~~-------~~~l~~~VGq~V~vkVl~ID~e~~--rL 360 (483)
..|++++|+|++++++|+||+++..+||+|.|+|.+. ..+ .......+|+.|+|+|+++|.+.+ ..
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~ 159 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFA 159 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcEE
Confidence 5899999999999999999999889999999998422 111 001123799999999999997654 12
Q ss_pred eechhh
Q 011538 361 ILSERE 366 (483)
Q Consensus 361 iLS~K~ 366 (483)
+.|+++
T Consensus 160 igsm~~ 165 (172)
T 2c35_B 160 IGSLMD 165 (172)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 336654
No 63
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.21 E-value=4.5e-08 Score=109.36 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=41.9
Q ss_pred cCCCcEEEEehHHHHH-h---hhHHHH--HHhhCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-----ccccCChh
Q 011538 269 TLSGRPLLSTRRLFRK-M---AWHRVR--QIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-----LSRVNNFT 336 (483)
Q Consensus 269 d~~G~iiLS~k~~~~~-~---~w~~L~--~~~k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-----~~rv~~~~ 336 (483)
+.+|.+.+|....... . ..+.+. ...+.|++++|+|+++.++|+||++ +|++||||.|++ +.+++++.
T Consensus 634 ~~dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~ 713 (757)
T 1e3p_A 634 EDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVE 713 (757)
T ss_dssp ------CCCBSSHHHHCC---------------------CBEEECC-CSCEECCC---CCCCC-----------------
T ss_pred cCCceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcc
Confidence 3467787776543221 1 223343 4568999999999999999999999 579999999999 46777777
Q ss_pred hhhhhcCCEEEEEEEEEECCCCceeechhhH
Q 011538 337 ELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (483)
Q Consensus 337 ~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~ 367 (483)
+.. ++||+|+|+|+++|+ +++|.||+|..
T Consensus 714 ~~~-~vGd~V~VkVi~vd~-~grI~LS~k~~ 742 (757)
T 1e3p_A 714 DVL-GVGQKVQVEIAEIDS-RGKLSLIPVIE 742 (757)
T ss_dssp --C-CSSCBCCCCCCCCCS-SCC--------
T ss_pred ccc-CCCCEEEEEEEEECC-CCCEEEEEecC
Confidence 765 899999999999998 89999999964
No 64
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.20 E-value=2.9e-06 Score=79.19 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=58.9
Q ss_pred hhCCCeEEEEEEEEECCeEEEEEC-----------CeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEEEECCCCcee
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRIE-----------GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLI 361 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I~-----------Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLi 361 (483)
.+ |++|.|+|+++.++|+||+|+ +++|+||.|++ +.+..++.+.+ .+||.|.++|++ +++.
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~-~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAV-GYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTC-CTTCEEEEEEEE-----TTTE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcC-CCCCEEEEEEEC-----CeEE
Confidence 37 999999999999999999994 68999999999 66667777765 899999999997 7899
Q ss_pred echhhH
Q 011538 362 LSEREA 367 (483)
Q Consensus 362 LS~K~~ 367 (483)
||.|..
T Consensus 129 LS~k~~ 134 (179)
T 3m7n_A 129 LSTKEE 134 (179)
T ss_dssp EECCST
T ss_pred EEEecC
Confidence 998864
No 65
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.18 E-value=3.4e-06 Score=90.43 Aligned_cols=73 Identities=23% Similarity=0.421 Sum_probs=61.1
Q ss_pred CCCCCcEEEEEEEEEeCc--eEEEEECCCceEEEEeccCcCcccc---------cCcccccCCCCEEEEEEEEEe-CCCe
Q 011538 372 NLREGTLLEGTVKKIYPY--GAQIRIGDSNRSGLLHISNMSRTRV---------TSVSDLLNEGERVKVLVVKSM-FPDK 439 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~--GaFV~I~~~gi~GLlhiSels~~~i---------~~~~~~~kvGd~VkVkVi~vd-ek~r 439 (483)
...+|.+|.|+|++|.++ ||||+|+. |..||||.++++|.++ .++.+.+++||.|.|+|++.. ..+.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCC
Confidence 467899999999999999 99999998 8999999999998764 346688999999999999875 4444
Q ss_pred EEEEEe
Q 011538 440 ISLSIA 445 (483)
Q Consensus 440 I~LSLK 445 (483)
..||..
T Consensus 121 a~lTt~ 126 (517)
T 2bx2_L 121 AALTTF 126 (517)
T ss_dssp CEEESS
T ss_pred ceEEee
Confidence 455543
No 66
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.16 E-value=2.9e-06 Score=78.34 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=50.7
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeeccccccc--c---CCh------hhhhhhcCCEEEEEEEEEECCCC
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR--V---NNF------TELKEKVGRRMYVQITRINEDTN 358 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel~~r--v---~~~------~~l~~~VGq~V~vkVl~ID~e~~ 358 (483)
..|++++|+|++++++|+||+++..+||+|.|+|... . .++ ++. ..+|+.|+|+|+++|.+.+
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCE-ECTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceE-ECCCCEEEEEEEEEEcCCC
Confidence 5899999999999999999999779999999999422 1 110 123 3789999999999997654
No 67
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.14 E-value=7e-06 Score=80.31 Aligned_cols=77 Identities=22% Similarity=0.211 Sum_probs=63.3
Q ss_pred CCCCCcEEEEEEEE----EeCCeEEEEeCC---ceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeecccc
Q 011538 169 EPKPGDFVIGVVVS----GNENKLDVNVGA---DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDA 241 (483)
Q Consensus 169 ~ik~GdiV~G~Vv~----V~~~gv~VdiG~---k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~ 241 (483)
.-+.|++|+|+|.+ ++++.++||+|. +.+|+||.+|+.|.
T Consensus 4 ~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~--------------------------------- 50 (251)
T 2asb_A 4 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG--------------------------------- 50 (251)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT---------------------------------
T ss_pred hhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC---------------------------------
Confidence 34579999999999 899999999997 69999999998653
Q ss_pred ccccCCCCCCCCcccCCCEEEEEEEEEc---CCCcEEEEehHHHHHhhhHH
Q 011538 242 IAMSGGSGPGRPVVETGTVLFAEVLGRT---LSGRPLLSTRRLFRKMAWHR 289 (483)
Q Consensus 242 ~~~~~~~~~~~~~~kVGd~V~v~Vi~~d---~~G~iiLS~k~~~~~~~w~~ 289 (483)
..|++||.|.|.|++.. ..++++||+..+...+.|-+
T Consensus 51 -----------E~~~~GDrIkayV~~V~~~~~gpqIiLSRt~p~lvk~Lfe 90 (251)
T 2asb_A 51 -----------ESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFS 90 (251)
T ss_dssp -----------CCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHHHHHHHH
T ss_pred -----------ccCCCCCEEEEEEEEEEcCCCCCEEEEEeccHHHHHHHHH
Confidence 24789999999999853 34789999998876555543
No 68
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.11 E-value=3.2e-06 Score=81.21 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=54.8
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeeccccccc-cCCh----------hhhhhhcCCEEEEEEEEEECCCC---ce
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNF----------TELKEKVGRRMYVQITRINEDTN---DL 360 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel~~r-v~~~----------~~l~~~VGq~V~vkVl~ID~e~~---rL 360 (483)
+.|++++|+|+++.++|+||+++..+||||.|+|.+. ..++ ++. ..+|+.|+|+|+++|.+.+ ++
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~-~~~Gd~VrVkV~~vd~~~~~i~~I 160 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVSSIHAI 160 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCE-EETTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccccE-ECCCCEEEEEEEEEEcCCCccEEE
Confidence 6899999999999999999999779999999999432 1111 123 3799999999999997654 33
Q ss_pred eechhh
Q 011538 361 ILSERE 366 (483)
Q Consensus 361 iLS~K~ 366 (483)
. |+++
T Consensus 161 g-Smk~ 165 (215)
T 2b8k_G 161 G-SIKE 165 (215)
T ss_dssp E-ECCS
T ss_pred E-EcCC
Confidence 3 6654
No 69
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.06 E-value=4e-06 Score=84.61 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcc----cc------cCcccccCCCCEEEEEEEEEeCCCeEE
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT----RV------TSVSDLLNEGERVKVLVVKSMFPDKIS 441 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~----~i------~~~~~~~kvGd~VkVkVi~vdek~rI~ 441 (483)
..++|++|.|+|+++.++|+||+|+. ...|++|.++++.. |. .++++.|++||.|.|||+++++..++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~ 170 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVS 170 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEE
Confidence 46899999999999999999999986 47899999998752 22 234578999999999999998788999
Q ss_pred EEEec
Q 011538 442 LSIAD 446 (483)
Q Consensus 442 LSLK~ 446 (483)
||+|+
T Consensus 171 LStr~ 175 (308)
T 2nn6_H 171 LHTRS 175 (308)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99985
No 70
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.6e-06 Score=79.18 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc--------------cCcccccCCCCEEEEEEEEEe
Q 011538 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV--------------TSVSDLLNEGERVKVLVVKSM 435 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i--------------~~~~~~~kvGd~VkVkVi~vd 435 (483)
-.+|++++|+|++++++|+||++.+ .++|++|++++..+++ ++....|++||.|++||++++
T Consensus 79 p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 79 PFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 4689999999999999999999965 4899999999976653 344667999999999999997
No 71
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.03 E-value=1.4e-06 Score=80.61 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeeccccccc-cCChh---------hhhhhcCCEEEEEEEEEECCCC---cee
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFT---------ELKEKVGRRMYVQITRINEDTN---DLI 361 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel~~r-v~~~~---------~l~~~VGq~V~vkVl~ID~e~~---rLi 361 (483)
..|++++|+|++++++|+||+++.++||+|.|+|.+. .-+.. +....+|+.|+++|+++|.+.+ ++.
T Consensus 83 ~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~Ig 162 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFAIA 162 (172)
T ss_dssp CTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceEEE
Confidence 6899999999999999999999989999999999422 11110 1123799999999999998764 333
Q ss_pred echhhH
Q 011538 362 LSEREA 367 (483)
Q Consensus 362 LS~K~~ 367 (483)
|+|++
T Consensus 163 -tm~~~ 167 (172)
T 3h0g_G 163 -TMKED 167 (172)
T ss_dssp -ECCST
T ss_pred -EcCCC
Confidence 66554
No 72
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.01 E-value=5.5e-06 Score=95.06 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=60.4
Q ss_pred CcEEEEEEEEEeCceEEEEECCCceEEEEeccCcC--cccc-----------cC----cccccCCCCEEEEEEEEEeC--
Q 011538 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS--RTRV-----------TS----VSDLLNEGERVKVLVVKSMF-- 436 (483)
Q Consensus 376 G~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels--~~~i-----------~~----~~~~~kvGd~VkVkVi~vde-- 436 (483)
|+++.|+|++|+++|+||.|.+.|++|+||+++|+ .+++ .+ ....|++||+|+|+|+.++.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 99999999999999999999876899999999997 4431 22 35789999999999999874
Q ss_pred --CCeEEEEEe
Q 011538 437 --PDKISLSIA 445 (483)
Q Consensus 437 --k~rI~LSLK 445 (483)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 379999997
No 73
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.99 E-value=6.1e-06 Score=92.53 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=53.7
Q ss_pred cEEEEEEEEEeCceEEEEECCCceEEEEeccCcC--cccc-----------cC----cccccCCCCEEEEEEEEEe-C--
Q 011538 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS--RTRV-----------TS----VSDLLNEGERVKVLVVKSM-F-- 436 (483)
Q Consensus 377 ~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels--~~~i-----------~~----~~~~~kvGd~VkVkVi~vd-e-- 436 (483)
+++.|+|++|+++|+||.|...|++|+||+++++ .+++ .+ ....|++||+|+|+|+.++ +
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 7999999999999999999876899999999996 4331 22 2578999999999999997 4
Q ss_pred -CCeEEEEEe
Q 011538 437 -PDKISLSIA 445 (483)
Q Consensus 437 -k~rI~LSLK 445 (483)
++||.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 589999987
No 74
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.90 E-value=2.9e-05 Score=72.25 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=63.5
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEec
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD 446 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~ 446 (483)
..++||+|.|+|+.+...+++|+|+.....|+||.+++. ...++.+..|++||.|.|||.+++...++.||+.+
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~ 77 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEKELEAEIECFD 77 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSC
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecCCCceEEEecc
Confidence 357899999999999999999999861279999999886 34567888999999999999998877889999443
No 75
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.89 E-value=3.2e-05 Score=79.53 Aligned_cols=70 Identities=24% Similarity=0.254 Sum_probs=59.0
Q ss_pred CCCCcEEEEEEEE----EeCCeEEEEeCC---ceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccc
Q 011538 170 PKPGDFVIGVVVS----GNENKLDVNVGA---DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAI 242 (483)
Q Consensus 170 ik~GdiV~G~Vv~----V~~~gv~VdiG~---k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~ 242 (483)
-+.|++|+|+|.+ ++++++|||+|. +.+|+||.+|++|.
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~---------------------------------- 173 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG---------------------------------- 173 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTT----------------------------------
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCC----------------------------------
Confidence 4599999999999 999999999997 69999999998753
Q ss_pred cccCCCCCCCCcccCCCEEEEEEEEEcC---CCcEEEEehHHHH
Q 011538 243 AMSGGSGPGRPVVETGTVLFAEVLGRTL---SGRPLLSTRRLFR 283 (483)
Q Consensus 243 ~~~~~~~~~~~~~kVGd~V~v~Vi~~d~---~G~iiLS~k~~~~ 283 (483)
..|++||.|.|.|++.+. ...+.||+..+..
T Consensus 174 ----------E~~~~GDrVkvyV~~V~~~~kgpqI~LSRT~p~l 207 (366)
T 1k0r_A 174 ----------ESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNL 207 (366)
T ss_dssp ----------CCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHH
T ss_pred ----------ccCCCCCEEEEEEEEEecCCCccEEEEEeCChHH
Confidence 247899999999999543 4578999887753
No 76
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.84 E-value=1.5e-05 Score=81.99 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCCCcEEEEEEEE----EeCceEEEEECC--CceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEE
Q 011538 372 NLREGTLLEGTVKK----IYPYGAQIRIGD--SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSI 444 (483)
Q Consensus 372 ~l~vG~iv~G~V~~----I~~~GaFV~I~~--~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSL 444 (483)
.-++|+++.|+|.+ +.+.++||+++. .+++|+||.+|+. |.+.|++||+|+|.|++++ +.+...+.|
T Consensus 127 ~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpqI~L 200 (366)
T 1k0r_A 127 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITL 200 (366)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEE
T ss_pred HhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccEEEE
Confidence 45599999999999 999999999974 1389999999986 4689999999999999997 445566666
Q ss_pred ecCCCCcCccc
Q 011538 445 ADLESEPGLFV 455 (483)
Q Consensus 445 K~~~~dPw~~l 455 (483)
..+.++....|
T Consensus 201 SRT~p~lv~~L 211 (366)
T 1k0r_A 201 SRTHPNLVRKL 211 (366)
T ss_dssp ESSCHHHHHHH
T ss_pred EeCChHHHHHH
Confidence 66666554433
No 77
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.72 E-value=0.00015 Score=67.49 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=59.9
Q ss_pred cCCCCCcEEEEEEEEEeCCeEEEEeCC-ceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccC
Q 011538 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (483)
Q Consensus 168 ~~ik~GdiV~G~Vv~V~~~gv~VdiG~-k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~ 246 (483)
|.+++||+|.|+|+.+..++++||||. ...|+||.+.+....
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~------------------------------------- 45 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS------------------------------------- 45 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCC-------------------------------------
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchh-------------------------------------
Confidence 678899999999999999999999998 799999988763210
Q ss_pred CCCCCCCcccCCCEEEEEEEEEcCCCcEEEEe
Q 011538 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLST 278 (483)
Q Consensus 247 ~~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~ 278 (483)
.+.++.+++||.|.|+|...+.++.+.||.
T Consensus 46 --k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc 75 (175)
T 2ja9_A 46 --KKNRPTLQVGDLVYARVCTAEKELEAEIEC 75 (175)
T ss_dssp --SSSCCCCCTTCEEEEEEEECCTTSCCEEES
T ss_pred --hhhhccCCCCCEEEEEEEEecCCCceEEEe
Confidence 112466999999999999887788899983
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.56 E-value=0.00016 Score=70.81 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCCCcEEEEEEEE----EeCceEEEEECCC--ceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeC-C--CeEEEE
Q 011538 373 LREGTLLEGTVKK----IYPYGAQIRIGDS--NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF-P--DKISLS 443 (483)
Q Consensus 373 l~vG~iv~G~V~~----I~~~GaFV~I~~~--gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vde-k--~rI~LS 443 (483)
-++|++|.|+|.+ +.+..++|+++.. +.+|+||.+|+. |.+.|++||+|+|.|++++. . .+|.||
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 3689999999999 8888999999730 389999999986 56899999999999999963 2 588888
Q ss_pred Eec
Q 011538 444 IAD 446 (483)
Q Consensus 444 LK~ 446 (483)
...
T Consensus 79 Rt~ 81 (251)
T 2asb_A 79 RTH 81 (251)
T ss_dssp SSC
T ss_pred ecc
Confidence 664
No 79
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.38 E-value=0.00014 Score=73.23 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=61.0
Q ss_pred cCCCCCcEEEEEEEEEeCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccCC
Q 011538 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (483)
Q Consensus 168 ~~ik~GdiV~G~Vv~V~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~~ 247 (483)
|.+++||+|.|+|+++.+++++|+|+....|+++++++.... |.+......|...+
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~g---------------------g~iR~~~~~D~~~m--- 146 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPG---------------------GELRRRSAEDELAM--- 146 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC----------------------------------CHHH---
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhcccc---------------------ceeecccchhhhhh---
Confidence 578999999999999999999999998788999988874210 00000000000001
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 011538 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (483)
Q Consensus 248 ~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~ 280 (483)
.+.|++||.|.|+|+..+.++.+.||.+.
T Consensus 147 ----~~~l~vGDlV~ArVisv~~~~~i~LStr~ 175 (308)
T 2nn6_H 147 ----RGFLQEGDLISAEVQAVFSDGAVSLHTRS 175 (308)
T ss_dssp ----HHHSCSSCEECCEEEEEETTTEEEEECCS
T ss_pred ----hccCCCCCEEEEEEEEcCCCCCEEEEecC
Confidence 24589999999999998778899999875
No 80
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.35 E-value=0.0006 Score=75.12 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=56.5
Q ss_pred hhCCC--eEEEEEEEEECCeEEEEE--CCeEEEeeccccc---cccC----------ChhhhhhhcCCEEEEEEEEEECC
Q 011538 294 KQLNE--PIEVKFTEWNTGGLLTRI--EGLRAFLPKAELL---SRVN----------NFTELKEKVGRRMYVQITRINED 356 (483)
Q Consensus 294 ~k~Ge--iV~GkV~~v~k~G~fV~I--~Gi~gFVP~Sel~---~rv~----------~~~~l~~~VGq~V~vkVl~ID~e 356 (483)
.+.|+ .++|+|+++.++|+||.+ .|++||||.+++. +++. +... ...+||.|+|+|.++|..
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~-~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET-VYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEE-EEETTCEEEEEEEEEETT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCC-EeCCCCEEEEEEEEEeCC
Confidence 46899 999999999999999999 4899999999983 2210 1111 237999999999999999
Q ss_pred CCceeech
Q 011538 357 TNDLILSE 364 (483)
Q Consensus 357 ~~rLiLS~ 364 (483)
+++|.++.
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 89988874
No 81
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.30 E-value=0.00046 Score=58.42 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=34.3
Q ss_pred hhCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-cccc
Q 011538 294 KQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRV 332 (483)
Q Consensus 294 ~k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-~~rv 332 (483)
++.|+.++++|+.+.++|+||++ ++++||||.|++ |.++
T Consensus 59 l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 59 PQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred CCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 36889999999999999999999 589999999999 6553
No 82
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.15 E-value=0.00056 Score=64.86 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=48.2
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeecccc-cccc-------------------CChhhhhhhcCCEEEEEEEEEE
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRV-------------------NNFTELKEKVGRRMYVQITRIN 354 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel-~~rv-------------------~~~~~l~~~VGq~V~vkVl~ID 354 (483)
..|++++|+|++++++|+||.++.++|++|.+++ +++. ++. .....+|+.|++||.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~-~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGT-ELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCE-EEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccC-CcEEcCCCEEEEEEEEEE
Confidence 5899999999999999999999878999999998 3322 111 122368888888888887
Q ss_pred CCC
Q 011538 355 EDT 357 (483)
Q Consensus 355 ~e~ 357 (483)
...
T Consensus 159 ~~~ 161 (203)
T 3ayh_B 159 FVD 161 (203)
T ss_dssp ECC
T ss_pred ccc
Confidence 543
No 83
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.11 E-value=0.00081 Score=72.14 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=55.2
Q ss_pred hCCCeEEEEEEEEECC--eEEEEEC-CeEEEeecccc-cccc---------CChhhhhhhcCCEEEEEEEEEECCCCcee
Q 011538 295 QLNEPIEVKFTEWNTG--GLLTRIE-GLRAFLPKAEL-LSRV---------NNFTELKEKVGRRMYVQITRINEDTNDLI 361 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~--G~fV~I~-Gi~gFVP~Sel-~~rv---------~~~~~l~~~VGq~V~vkVl~ID~e~~rLi 361 (483)
..|.++.|+|+++.++ |+||+++ |-.||+|.+++ +.++ .++.+.. ++||+|.|.|++....++-..
T Consensus 44 ~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~l-k~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 44 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVL-REGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTC-CTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhc-cCCCEEEEEEEeeccccCCce
Confidence 5899999999999999 9999997 78899999999 4442 2344443 689999999999776555555
Q ss_pred echh
Q 011538 362 LSER 365 (483)
Q Consensus 362 LS~K 365 (483)
||..
T Consensus 123 lTt~ 126 (517)
T 2bx2_L 123 LTTF 126 (517)
T ss_dssp EESS
T ss_pred EEee
Confidence 5544
No 84
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.06 E-value=0.001 Score=66.43 Aligned_cols=71 Identities=10% Similarity=-0.000 Sum_probs=62.8
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEE
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSL 444 (483)
-.++||+|-|+|+++....+.|+|.. -..|+||.+++. ...++.+..|++||.|.|+|++++....+.||+
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECC-CceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 36899999999999999999999987 588999999875 345678889999999999999987777899998
No 85
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.93 E-value=0.0028 Score=63.34 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=59.5
Q ss_pred cCCCCCcEEEEEEEEEeCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeeccccccccCC
Q 011538 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (483)
Q Consensus 168 ~~ik~GdiV~G~Vv~V~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~d~~~~~~~ 247 (483)
|-+++||+|.|+|+++..+.+.|||+....|+||.+++....
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gat-------------------------------------- 164 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGAT-------------------------------------- 164 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCS--------------------------------------
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcch--------------------------------------
Confidence 678999999999999999999999998888998887753110
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEe
Q 011538 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLST 278 (483)
Q Consensus 248 ~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~ 278 (483)
.+..+.|++||.|.|+|+..+.++.+.||.
T Consensus 165 -k~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 165 -KRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp -SCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred -hhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 012456999999999999877788888987
No 86
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0011 Score=63.73 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=50.1
Q ss_pred hCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-ccccC-------------ChhhhhhhcCCEEEEEEEEEECCCCc
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRVN-------------NFTELKEKVGRRMYVQITRINEDTND 359 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-~~rv~-------------~~~~l~~~VGq~V~vkVl~ID~e~~r 359 (483)
..|++++|+|++++++|+||.+ +.++|+++.+++ .+... .-......+|+.|++||.++|...+.
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~~ 159 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVK 159 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccCC
Confidence 5899999999999999999999 557999999998 33220 00112247899999999999876543
No 87
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.71 E-value=0.003 Score=70.78 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=48.9
Q ss_pred hCCCeEEEEEEEEECCeEEEEEC--CeEEEeeccccc---ccc-----------CCh----hhhhhhcCCEEEEEEEEEE
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAELL---SRV-----------NNF----TELKEKVGRRMYVQITRIN 354 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~--Gi~gFVP~Sel~---~rv-----------~~~----~~l~~~VGq~V~vkVl~ID 354 (483)
...+.++|+|+++.++|+||.+. |++|+||.+++. +++ .+. .. ..++|++|+|+|+.+|
T Consensus 668 ~~~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~-~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 668 NNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPR-DVYVFDKVEVQVRSVM 746 (760)
T ss_dssp TCCSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCE-EEETTCEEEEEEC---
T ss_pred cCceEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCc-EEecCCEEEEEEEEEE
Confidence 34489999999999999999994 799999999983 211 111 12 2379999999999999
Q ss_pred CC---CCceeechh
Q 011538 355 ED---TNDLILSER 365 (483)
Q Consensus 355 ~e---~~rLiLS~K 365 (483)
.+ +++|.+|+|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 87 689999875
No 88
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0039 Score=71.69 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=54.8
Q ss_pred hCCCeEEEEEEEEECCeEEEEEC--CeEEEeeccccc--c-cc-----------CC----hhhhhhhcCCEEEEEEEEEE
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAELL--S-RV-----------NN----FTELKEKVGRRMYVQITRIN 354 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~--Gi~gFVP~Sel~--~-rv-----------~~----~~~l~~~VGq~V~vkVl~ID 354 (483)
..|+..+|+|+++.++|+||.+. |++|+||.+++. . ++ ++ ... ...+|++|+|+|..+|
T Consensus 885 ~~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~-~~~lGD~V~VkV~~vd 963 (977)
T 2wp8_J 885 NNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPR-DVYVFDKVEVQVRSVM 963 (977)
T ss_dssp HTTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCE-EEETTCEEEEEECCCC
T ss_pred ccceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCc-EEccCCEEEEEEEEEc
Confidence 34999999999999999999994 799999999984 2 11 11 112 2379999999999998
Q ss_pred CC---CCceeechh
Q 011538 355 ED---TNDLILSER 365 (483)
Q Consensus 355 ~e---~~rLiLS~K 365 (483)
.+ +++|.||+|
T Consensus 964 ~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 964 DPITSKRKAELLLK 977 (977)
T ss_dssp CSSSCCCCCCEEEC
T ss_pred CcccCCCceEEEeC
Confidence 63 378888875
No 89
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=91.72 E-value=0.44 Score=39.95 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=48.5
Q ss_pred CCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccc-----cC-cccccCCCCEEEEE
Q 011538 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-----TS-VSDLLNEGERVKVL 430 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i-----~~-~~~~~kvGd~VkVk 430 (483)
...|+.+.+.|+++.+.++-|.+.+ |-.+.|+.+.|.|.+- .. +++.+++||.|.|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~-g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKN-GETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETT-SCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcC-CCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 3458999999999999999999976 5788899999999853 34 67789999999987
No 90
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=89.76 E-value=0.53 Score=49.78 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEE
Q 011538 374 REGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSI 444 (483)
Q Consensus 374 ~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSL 444 (483)
++|+.+.|.|..+ .+ ..|++|++++..+ ......|++||.|+|+|.++| .+++|.+..
T Consensus 402 ~~g~~f~g~vv~l---------~~--~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDR---------RG--AQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEE---------ET--TEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEE---------eC--cEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 6799999987543 33 3788888888755 223467999999999999998 778887654
No 91
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=88.33 E-value=1.3 Score=41.95 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=46.7
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCCceEEEEeccCcCcc--cccCc----------ccccCCCCEEEEEEEEEeCCC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT--RVTSV----------SDLLNEGERVKVLVVKSMFPD 438 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~--~i~~~----------~~~~kvGd~VkVkVi~vdek~ 438 (483)
...+|+++.|+|+.+++.|+.+-+.+. ...+|+...|..+ +..+- .+.-++|+.|++||.+++.++
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~-Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~ 203 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDA-FNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTG 203 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTT-EEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCS
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCC-EEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecC
Confidence 467899999999999997777655553 6789999887532 11110 012246999999999987444
No 92
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=88.01 E-value=0.99 Score=42.79 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=45.0
Q ss_pred hCCCeEEEEEEEEECCeEEEEE-CCeEEEeeccccc---cccCC--------h--hhhhhhcCCEEEEEEEEEECCCC
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELL---SRVNN--------F--TELKEKVGRRMYVQITRINEDTN 358 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel~---~rv~~--------~--~~l~~~VGq~V~vkVl~ID~e~~ 358 (483)
..|++++|+|+.+.+.|+.+-+ |-+.+|||...+. ....+ + ++- ..+|++|+|||..++..++
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~-~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNG-EPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSC-CBCCSEEEEEEEEEECCSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCC-CCCCCEEEEEEEEEEecCC
Confidence 6899999999999998877755 5588999999882 11111 0 000 1368999999999886443
No 93
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=87.72 E-value=1.7 Score=36.11 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=48.1
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECCC-ceEEEEecc-CcCcccccCcccccCCCCEEEEEEEEEeC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHIS-NMSRTRVTSVSDLLNEGERVKVLVVKSMF 436 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~~-gi~GLlhiS-els~~~i~~~~~~~kvGd~VkVkVi~vde 436 (483)
++.+|++.+|.|. +.++-.+|.+.++ |.+|++--. ++-.++..++++.+ +|.+|+|+|+.+|.
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 6889999999886 5666778999876 789987432 33345666666666 79999999998863
No 94
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=86.78 E-value=19 Score=33.06 Aligned_cols=170 Identities=14% Similarity=0.051 Sum_probs=100.4
Q ss_pred ccccccccCCCCCcEEEEEEEEEe-CCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeecc
Q 011538 161 DKVSVEYYEPKPGDFVIGVVVSGN-ENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDD 239 (483)
Q Consensus 161 ~~~~~~~~~ik~GdiV~G~Vv~V~-~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~ 239 (483)
..++.++.++.+|+.+...|+.+. ++..||.+-... . . ..+..+..+ ..++..
T Consensus 4 ~~l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~-~-------~----~~l~~L~~~----l~~~~~---------- 57 (201)
T 4b9w_A 4 EALEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDD-A-------L----EKLDDLNQS----LADYCA---------- 57 (201)
T ss_dssp --CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTT-H-------H----HHHHHHHHH----HHHHHH----------
T ss_pred CcceeEEEEcCCCCEEEEEEEEEeCCCEEEEEECCCc-h-------H----HHHHHHHHH----HHHHHh----------
Confidence 456677888999999999999994 577888763210 0 0 011111111 111100
Q ss_pred ccccccCCCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhHHHHHHhhCCCeEEEEEEEEECCe-EEEEE--
Q 011538 240 DAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG-LLTRI-- 316 (483)
Q Consensus 240 d~~~~~~~~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~~~~~~~w~~L~~~~k~GeiV~GkV~~v~k~G-~fV~I-- 316 (483)
.. ......+++|+..-|.. . ..|....|+|+++.+.| +.|.+
T Consensus 58 ------~~-~~~~~~~~~G~~c~a~~---~-------------------------~d~~wyRa~V~~~~~~~~~~V~~vD 102 (201)
T 4b9w_A 58 ------QK-PPNGFKAEIGRPCCAFF---S-------------------------GDGNWYRALVKEILPSGNVKVHFVD 102 (201)
T ss_dssp ------SS-SCCCCCCCTTCEEEEEE---T-------------------------TTTEEEEEEEEEECTTSCEEEEETT
T ss_pred ------cC-CCCCCCCCCCCEEEEEE---C-------------------------CCCeEEEEEEEEECCCCeEEEEEEc
Confidence 00 00112356777654431 1 24678899999987665 55655
Q ss_pred CCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhhhcCCCCCcEEEEEEEEEeCceEEEEEC
Q 011538 317 EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIG 396 (483)
Q Consensus 317 ~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e~~~l~vG~iv~G~V~~I~~~GaFV~I~ 396 (483)
-|....+|.+++..- +.++.....+-++|++-.+.+.++. -|........++-.|..+.++|..+...+..|.+.
T Consensus 103 yG~~~~v~~~~l~~l---~~~f~~lP~qA~~c~L~~v~p~~~~--w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~ 177 (201)
T 4b9w_A 103 YGNVEEVTTDQLQAI---LPQFLLLPFQGMQCWLVDIQPPNKH--WTKEATARFQACVVGLKLQARVVEITANGVGVELT 177 (201)
T ss_dssp TCCEEEECGGGEEEC---CGGGGSSCBCCEEEEESSEECSSSS--CCHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEEEHHHhccC---hHhHcccchhhEEEEEcCEEcCCCC--CCHHHHHHHHHHHCCCEEEEEEEEEeCCEEEEEEE
Confidence 377889999998321 1223335789999998888765432 12221111124456888999999999888888774
No 95
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=79.74 E-value=40 Score=31.47 Aligned_cols=171 Identities=13% Similarity=0.062 Sum_probs=100.7
Q ss_pred ccccccccCCCCCcEEEEEEEEE-eCCeEEEEeCCceeeEeecccccccccchhhhhhhhhhhhhhHHhhcccceeeecc
Q 011538 161 DKVSVEYYEPKPGDFVIGVVVSG-NENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDD 239 (483)
Q Consensus 161 ~~~~~~~~~ik~GdiV~G~Vv~V-~~~gv~VdiG~k~~G~lp~sEl~~~~~~e~~~l~~d~~~~~~e~~~~g~v~vv~~~ 239 (483)
..++.++-.+.+|+.+...|+.| +++..||.+-... . + ..+..+.. ...++.
T Consensus 4 ~~l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~-~------~-----~~L~~L~~----~l~~~~----------- 56 (226)
T 4b9x_A 4 EALEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDD-A------L-----EKLDDLNQ----SLADYC----------- 56 (226)
T ss_dssp --CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTT-H------H-----HHHHHHHH----HHHHHT-----------
T ss_pred cceeeEEEEcCCCCEEEEEEEEEeCCCEEEEEEcCCc-h------H-----HHHHHHHH----HHHHHH-----------
Confidence 45677888899999999999999 4577888863210 0 0 01111111 111110
Q ss_pred ccccccCCCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhHHHHHHhhCCCeEEEEEEEEECCe-EEEEE--
Q 011538 240 DAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG-LLTRI-- 316 (483)
Q Consensus 240 d~~~~~~~~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~~~~~~~w~~L~~~~k~GeiV~GkV~~v~k~G-~fV~I-- 316 (483)
+.. ......+++|+..-|.. . ..|....|+|+++...| +.|.+
T Consensus 57 -----~~~-~~~~~~~~~G~~c~a~~---~-------------------------~d~~WyRa~V~~~~~~~~~~V~~vD 102 (226)
T 4b9x_A 57 -----AQK-PPNGFKAEIGRPCCAFF---S-------------------------GDGNWYRALVKEILPSGNVKVHFVD 102 (226)
T ss_dssp -----SSS-CC--CCCCTTCEEEEEE---T-------------------------TTTEEEEEEEEEECSSSEEEEECTT
T ss_pred -----hcC-CCCCCCCCCCCEEEEEE---C-------------------------CCCeEEEEEEEEECCCCeEEEEEEe
Confidence 000 00112346677654431 0 24678899999997665 44555
Q ss_pred CCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhhhcCCCCCcEEEEEEEEEeCceEEEEEC
Q 011538 317 EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIG 396 (483)
Q Consensus 317 ~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e~~~l~vG~iv~G~V~~I~~~GaFV~I~ 396 (483)
-|....+|.+++..- +.++.....+-++|++-.+.+.++. -|........++-.|..+.++|..+...++.|++.
T Consensus 103 yGn~~~v~~~~l~~l---~~~f~~lP~qA~~c~L~~v~p~~~~--w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 103 YGNVEEVTTDQLQAI---LPQFLLLPFQGMQCWLVDIQPPNKH--WTKEATARFQACVVGLKLQARVVEITANGVGVELT 177 (226)
T ss_dssp TCCEEEEEGGGEECC---CGGGSSSCBCCEEEEESSEECSSSS--CCHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE
T ss_pred cCCEEEEEHHHhccC---hHHHcccccceEEEEEecEECCCCC--CCHHHHHHHHHHHCCCeEEEEEEEEeCCeEEEEEE
Confidence 377888999998321 1223335789999998888765432 12211111124556888999999999989888875
Q ss_pred C
Q 011538 397 D 397 (483)
Q Consensus 397 ~ 397 (483)
+
T Consensus 178 d 178 (226)
T 4b9x_A 178 D 178 (226)
T ss_dssp E
T ss_pred E
Confidence 3
No 96
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=77.97 E-value=26 Score=28.43 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCCCcEEEEEEEEEeCceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCC-Ce-EEEEEecC
Q 011538 373 LREGTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DK-ISLSIADL 447 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek-~r-I~LSLK~~ 447 (483)
+.......|+|+... .|. ||.-.+.+-+-|+|.+.+... ...+.+||.|...+.. .++ +| -...++.+
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~-~~k~Gk~~A~~V~~~ 83 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS-DRRTGKPIAVKLVKI 83 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE-CSSSCCEEEEEEEES
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE-CCCCCCcEEEEEEEC
Confidence 344567899999995 554 776665348999999998743 2568999999998864 344 53 34444433
No 97
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=75.12 E-value=27 Score=27.42 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=40.9
Q ss_pred EEEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 011538 379 LEGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (483)
Q Consensus 379 v~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~ 447 (483)
..|+|+...+ .|. ||.-.+.+-+ |+|.|.+.... .+++||.|...+.. .+++.-...++.+
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g~kG~~A~~V~~~ 65 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT-NNKGLSAYAVKVV 65 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-CSSSEEEEEEEEC
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe-CCCCceeEEEEeC
Confidence 5799999854 333 5555442456 99999996432 68999999998864 3556444444433
No 98
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=72.84 E-value=10 Score=31.32 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred CcEEEEEEEEEeCceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 376 GTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 376 G~iv~G~V~~I~~~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
.....|+|+.. ..|. ||.-.+.+-+-|+|.+.+... ...+..||.|...+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 56678999998 5554 776654247999999999743 256899999999884
No 99
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=71.30 E-value=8.9 Score=31.19 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=40.2
Q ss_pred CCcEEEEEEEEEeCceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 375 EGTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 375 vG~iv~G~V~~I~~~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
.++...|+|+...+ |. ||.-.+.+-+-|+|.|.+... ...+..||.|...+.
T Consensus 15 ~~~~~~G~Vk~f~k-GfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKD-NFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECS-SEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEEC-CccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 57788999999974 44 676654358999999999743 256899999998774
No 100
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=69.73 E-value=15 Score=30.38 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=39.2
Q ss_pred hCCCeEEEEEEEEECCeEEEEE---CCeEEEeeccc-c-ccccCChhhhhhhcCCEEEEEEEEEEC
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAE-L-LSRVNNFTELKEKVGRRMYVQITRINE 355 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I---~Gi~gFVP~Se-l-~~rv~~~~~l~~~VGq~V~vkVl~ID~ 355 (483)
..|++.+|.|.- ..+-+.|.+ .|.+|++-..- + .+++.+.++- .+|..|+++|+++|.
T Consensus 31 ~~g~VtkGiVy~-kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkk--LVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 31 SPGSVHEGIVYF-KDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER--LVGRVIKTRVVRADG 93 (102)
T ss_dssp CSSCEEEEEEEE-ETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH--HTTCEEEEEEEEECS
T ss_pred CCCceEeeEEEE-eCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHH--hcCceEEEEEEEecc
Confidence 578888888763 334455766 36788765332 2 3455555543 699999999999985
No 101
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=68.90 E-value=11 Score=33.08 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCcEEEEEEEEEeCceEEEEECCC-ceEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 375 EGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 375 vG~iv~G~V~~I~~~GaFV~I~~~-gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
.|..++|+|+.|.+.+++|.+.+. ...--+|.+++.--.-......|.+||+|.|.--
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSR 72 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEEC
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEec
Confidence 499999999999999999999762 1234666666643222222356999999998553
No 102
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=66.11 E-value=8.8 Score=30.83 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=42.0
Q ss_pred EEEEEEEEEeCceEE-EEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEE
Q 011538 378 LLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLS 443 (483)
Q Consensus 378 iv~G~V~~I~~~GaF-V~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LS 443 (483)
.+.|+|.+..+.|.| |.+.+ |..-++|++---.. -.-.+.+||.|.+.+...+ .+++|...
T Consensus 15 e~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK~Rk----~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELEN-GHKVLAHISGKMRQ----HYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETT-SCEEEEEECHHHHH----TTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcceec----CCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 478999999988865 88887 66667777642211 1123789999998776554 56777654
No 103
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=65.76 E-value=26 Score=27.70 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=40.6
Q ss_pred cEEEEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCe
Q 011538 377 TLLEGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439 (483)
Q Consensus 377 ~iv~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~r 439 (483)
....|+|+...+ .|. ||.-.+.+-+-|+|.|.+....-..--..+..||.|...+.. .++++
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~-~~kG~ 70 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE-GEKGA 70 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE-CSSSE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE-CCCCc
Confidence 457899999864 332 555543258999999999753111112458899999998864 34544
No 104
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=64.54 E-value=18 Score=29.84 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=42.4
Q ss_pred HhhCCCeEEEEEEEEECCeEEEEE-CCeEEEeecccc-ccc--c---CC-hhhhhhhcCCEEEEE
Q 011538 293 IKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSR--V---NN-FTELKEKVGRRMYVQ 349 (483)
Q Consensus 293 ~~k~GeiV~GkV~~v~k~G~fV~I-~Gi~gFVP~Sel-~~r--v---~~-~~~l~~~VGq~V~vk 349 (483)
....|..+.+.|+++.+.++.|.+ +|-.+.||.+.| |.+ + +. +.+.. .+|+.|.++
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l-~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRI-RPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSC-CTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccC-CCCCEEEEE
Confidence 345688999999999999999999 568888999999 643 2 22 23333 678888887
No 105
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=60.25 E-value=10 Score=30.79 Aligned_cols=52 Identities=12% Similarity=0.216 Sum_probs=38.7
Q ss_pred CCCeEEEEEEEEECC-eEEEEEC-CeEEEeeccccccccCChhhhhhhcCCEEEEEEEE
Q 011538 296 LNEPIEVKFTEWNTG-GLLTRIE-GLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 296 ~GeiV~GkV~~v~k~-G~fV~I~-Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
.++...|+|+.++++ |++..-+ |-+.|+|.+.+.... +.+ ..||.|.+.+..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~~---~~L--~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDV---DSL--ELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSCT---TTC--CTTCEEEECCCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhcccc---CcC--CCCCEEEEEEEE
Confidence 578899999999874 6665544 589999999994322 233 489999998643
No 106
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=60.10 E-value=51 Score=24.91 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.5
Q ss_pred EEEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCC
Q 011538 379 LEGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438 (483)
Q Consensus 379 v~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~ 438 (483)
..|+|+...+ .|. ||.-.+ |-+-|+|.|.+.... ...+..||.|...+.. .+++
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~-g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~-~~kG 57 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEG-GSDVFVHFTAIQGEG----FKTLEEGQEVSFEIVQ-GNRG 57 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETT-EEEEEEEGGGBCSSS----CCCCCTTCEEEEEEEE-ETTE
T ss_pred CceEEEEEECCCCeEEEecCC-CccEEEEHHHccccC----CCCCCCCCEEEEEEEE-CCCC
Confidence 3699999864 343 666666 589999999997432 1358899999998864 3444
No 107
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=59.30 E-value=55 Score=24.90 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=38.4
Q ss_pred EEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeE
Q 011538 380 EGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKI 440 (483)
Q Consensus 380 ~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI 440 (483)
.|+|+...+ .|. ||.-.+.+-+-|+|.|.+..... ..+..||.|...+.. .++++-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~kG~~ 60 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGF----KTLKEGQRVSFDVTT-GPKGKQ 60 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEE-ETTEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEE-CCCCcc
Confidence 689999854 333 55554435799999999964322 458899999998864 345443
No 108
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=58.93 E-value=91 Score=27.09 Aligned_cols=85 Identities=7% Similarity=-0.096 Sum_probs=56.6
Q ss_pred hCCCeEEEEEEEEECCeEEEEECC-e--EEEeeccccccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhhhc
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEG-L--RAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL 371 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~G-i--~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e~~ 371 (483)
+.|...+|+|+.+.+.+++|.+.+ . .--+|.+++.-......+..+.+|++|++.- +.+.
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~----~~~d------------- 75 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS----RANE------------- 75 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE----CC---------------
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe----cCCC-------------
Confidence 358999999999999999999954 2 3578888882111112223347999999853 1111
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEECC
Q 011538 372 NLREGTLLEGTVKKIYPYGAQIRIGD 397 (483)
Q Consensus 372 ~l~vG~iv~G~V~~I~~~GaFV~I~~ 397 (483)
.++--...|+|+.+...=.+|+..+
T Consensus 76 -~ep~gWw~a~I~~~kg~f~~V~y~~ 100 (128)
T 3h8z_A 76 -QEPCGWWLARVRMMKGDFYVIEYAA 100 (128)
T ss_dssp --CCCEEEEEEEEEEETTEEEEEETT
T ss_pred -CCcCccEEEEEEEeeCCEEEEEEcC
Confidence 2344577899999997767777654
No 109
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=57.25 E-value=20 Score=37.72 Aligned_cols=58 Identities=19% Similarity=0.124 Sum_probs=38.6
Q ss_pred hCCCeEEEEEEEEECCeEEEEECCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEECCCCceeec
Q 011538 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~fV~I~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS 363 (483)
..|+..+|.|+++. +..|+++.+.+......... ..+|+.|+|+|.++|..++++.+.
T Consensus 402 ~~g~~f~g~vv~l~---------~~~glV~v~~l~~d~~~~~~--~~lGd~V~V~v~~vd~~~~~i~f~ 459 (469)
T 2r7d_A 402 QPERVWDAVVVDRR---------GAQATLLIPDLAFDVQVNTP--AAPGTALQVQFADIDLPQMRVRAR 459 (469)
T ss_dssp CTTCCEEEEEEEEE---------TTEEEEEEGGGTEEEEEECC--CCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEEEe---------CcEEEEEECCCCeEEecCCc--CCCCCEEEEEEEEEccCCCEEEEE
Confidence 57999999887654 33556666666211111112 269999999999999988877543
No 110
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=56.95 E-value=36 Score=26.25 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=38.8
Q ss_pred EEEEEEEEEeC---ceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCC
Q 011538 378 LLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438 (483)
Q Consensus 378 iv~G~V~~I~~---~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~ 438 (483)
...|+|+...+ || ||.-.+.+-+-|+|.+.+.... ...+..||.|...+.. .+++
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~-~~kG 62 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITN-GAKG 62 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCSS----CCCCCTTCEEEEEEEE-ETTE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHccccc----CcCCCCCCEEEEEEEE-CCCC
Confidence 36799999864 55 5655542478999999997432 2358899999998864 3444
No 111
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=56.09 E-value=37 Score=26.61 Aligned_cols=62 Identities=19% Similarity=0.101 Sum_probs=42.3
Q ss_pred EEEEEEEeC-ceE-EEEECCCceEEEEeccCcC-cccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 011538 380 EGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMS-RTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (483)
Q Consensus 380 ~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels-~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~~ 447 (483)
.|+|+...+ .|. ||.-.+ |-+-|+|.|.+. ...+ ..+..||.|...+.. .+++.-...++.+
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~d-G~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~-g~kG~~A~~V~~~ 66 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDD-GESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP-TPKGLAAKAISLP 66 (74)
T ss_dssp EEEEEEEETTTTEEEEEETT-SCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC-TTTSCEEEEEECC
T ss_pred CEEEEEEECCCCEEEEecCC-CceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE-CCCCceeEEEEEc
Confidence 689998864 343 666666 589999999996 4322 458899999998852 3556544444433
No 112
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=54.37 E-value=34 Score=25.94 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=34.9
Q ss_pred EEEEEEEEEC---CeEEEEECCeEEEeeccccc-cccCChhhhhhhcCCEEEEEEEE
Q 011538 300 IEVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 300 V~GkV~~v~k---~G~fV~I~Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
.+|+|+..+. +|++..-+|-+.|+|.|.+. ...+. + ..|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKT---L--EEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCC---C--CTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCC---C--CCCCEEEEEEEE
Confidence 3799999974 47666556788999999994 22222 2 489999999754
No 113
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=52.16 E-value=75 Score=24.52 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=36.4
Q ss_pred EEEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEE
Q 011538 379 LEGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433 (483)
Q Consensus 379 v~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~ 433 (483)
..|+|+...+ .|. ||.-.+ |-+-|+|.|.+....+ ..+..||.|...+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~-g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREG-DTDVFVHYTAINAKGF----RTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTT-SCCEEEEGGGBCSSSC----SSCCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCC-CCcEEEEhhhccccCC----CCCCCCCEEEEEEEE
Confidence 3699999864 343 666665 5789999999974321 358899999998863
No 114
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=51.86 E-value=59 Score=28.88 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=50.2
Q ss_pred CCCCcEEEEEEEEEeCceEE-EEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEec
Q 011538 373 LREGTLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIAD 446 (483)
Q Consensus 373 l~vG~iv~G~V~~I~~~GaF-V~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd-ek~rI~LSLK~ 446 (483)
+.....+.|+|+...+.+.| |.+.+ |..-|+|++-=-. . .-.+..||.|.|-....+ .+++|..-++.
T Consensus 27 ~p~ege~~g~V~e~lgn~~f~V~l~n-G~~~La~I~GKmR----k-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 27 FKEDGQEYAQVIKMLGNGRLEAMCFD-GVKRLCHIRGKLR----K-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp CCCTTEEEEEEEEECSSSEEEEEETT-TEEEEEECCSGGG----G-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred CCCCCEEEEEEEEEcCCCEEEEEeCC-CCEEEEEecccce----e-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 33455688999999999987 78877 8899999876332 2 344889999998775444 67788777643
No 115
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=50.86 E-value=37 Score=26.17 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=35.5
Q ss_pred eEEEEEEEEEC---CeEEEEECC-eEEEeeccccc-cccCChhhhhhhcCCEEEEEEEE
Q 011538 299 PIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 299 iV~GkV~~v~k---~G~fV~I~G-i~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
...|+|+..+. +|++..-+| -+.|+|.+.+. ...+ .+ ..|+.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~---~l--~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFK---TL--AEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCC---CC--CTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCc---CC--CCCCEEEEEEEE
Confidence 47899999974 476655554 78999999994 2222 23 489999999765
No 116
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=48.76 E-value=40 Score=26.58 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=37.3
Q ss_pred CeEEEEEEEEEC---CeEEEEEC-CeEEEeeccccccc--cCChhhhhhhcCCEEEEEEEE
Q 011538 298 EPIEVKFTEWNT---GGLLTRIE-GLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 298 eiV~GkV~~v~k---~G~fV~I~-Gi~gFVP~Sel~~r--v~~~~~l~~~VGq~V~vkVl~ 352 (483)
...+|+|+..+. +|++..-+ |-+.|+|.|.+... -...+.+ ..|+.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l--~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV--GDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSC--CSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccC--CCCCEEEEEEEE
Confidence 457899999974 47776654 68999999999421 1112233 489999999754
No 117
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=48.01 E-value=50 Score=24.93 Aligned_cols=46 Identities=28% Similarity=0.526 Sum_probs=34.8
Q ss_pred hCCCeEEEEEEEEECCeE-EEEECCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEE
Q 011538 295 QLNEPIEVKFTEWNTGGL-LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~-fV~I~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID 354 (483)
+.|+.++.+|.+....|- +..++|...|+|.. .+|+.|.++|.+..
T Consensus 12 ~~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~a--------------lPGE~V~v~i~k~k 58 (68)
T 1yez_A 12 EEGEVYDVTIQDIARQGDGIARIEGFVIFVPGT--------------KVGDEVRIKVERVL 58 (68)
T ss_dssp CTTEEEEEECCEEETTTEEEEEETTEEEEEESC--------------CTTCEEEEEEEEEC
T ss_pred CCCCEEEEEEEEcCCCccEEEEECCEEEECcCC--------------CCCCEEEEEEEEec
Confidence 467788888888876654 45568888888843 37999999998864
No 118
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=47.60 E-value=41 Score=25.63 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=34.7
Q ss_pred EEEEEEEEEC---CeEEEEEC-CeEEEeeccccc-cccCChhhhhhhcCCEEEEEEEE
Q 011538 300 IEVKFTEWNT---GGLLTRIE-GLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 300 V~GkV~~v~k---~G~fV~I~-Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
.+|+|+..+. +|++..-+ |-+.|+|.|.+. ...+ .+ ..|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~---~l--~~G~~V~f~~~~ 54 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFK---TL--KEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGS---SC--CTTCEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCC---CC--CCCCEEEEEEEE
Confidence 3799999975 47666554 589999999993 2222 23 489999999754
No 119
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=46.61 E-value=85 Score=27.90 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=39.7
Q ss_pred CCcEEEEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEE
Q 011538 375 EGTLLEGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434 (483)
Q Consensus 375 vG~iv~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~v 434 (483)
.|....|+|+.... .|. ||.-.+.+-+-|+|.+.+... ..+..||.|...+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 57778999999854 333 555554257999999998522 2699999999988753
No 120
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=46.57 E-value=1.1e+02 Score=24.57 Aligned_cols=35 Identities=6% Similarity=-0.218 Sum_probs=26.4
Q ss_pred CCcEEEEEEEEEeCCeEEEEeCC-ceeeEeeccccc
Q 011538 172 PGDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVL 206 (483)
Q Consensus 172 ~GdiV~G~Vv~V~~~gv~VdiG~-k~~G~lp~sEl~ 206 (483)
..+...|+|...++..=|+.-.. +.+-|+|.+.|.
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~ 50 (89)
T 1wfq_A 15 AALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYN 50 (89)
T ss_dssp CCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCS
T ss_pred cccccceEEEEEeCCeeEEecCCCCccEEEEhHHhh
Confidence 34678999999986666777644 378899988874
No 121
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=46.44 E-value=46 Score=29.66 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=39.8
Q ss_pred hCCCeEEEEEEEEEC---CeEEEEECC-eEEEeeccccccccCChhhhhhhcCCEEEEEEEEE
Q 011538 295 QLNEPIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRI 353 (483)
Q Consensus 295 k~GeiV~GkV~~v~k---~G~fV~I~G-i~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~I 353 (483)
..|+...|+|+..+. +|++..-+| -+.|+|.+.+... ..+ ..|+.|.+.|...
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~----~~L--~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE----YVP--VEGDEVTYKMCSI 114 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS----BCC--CTTCEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC----CcC--CCCCEEEEEEEec
Confidence 468889999999974 477765554 8999999999422 123 5899999997653
No 122
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.13 E-value=47 Score=29.36 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=37.0
Q ss_pred CeEEEEEEEEEC---CeEEEEE--------CCeEEEeeccccc-cccCChhhhhhhcCCEEEEEEEEE
Q 011538 298 EPIEVKFTEWNT---GGLLTRI--------EGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRI 353 (483)
Q Consensus 298 eiV~GkV~~v~k---~G~fV~I--------~Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~I 353 (483)
..++|+|+-.+. +|++..- +|-+.|+|.+.|. ..++ .+ ..|+.|.+.|..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~---~l--~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFR---SL--KEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSC---CC--CTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCc---cC--CCCCEEEEEEEEc
Confidence 457899999974 4777654 3679999999993 3332 23 4899999998653
No 123
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=45.51 E-value=31 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=34.7
Q ss_pred EEEEEEEEEC---CeEEEEECCeEEEeeccccc-cccCChhhhhhhcCCEEEEEEEE
Q 011538 300 IEVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 300 V~GkV~~v~k---~G~fV~I~Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
.+|+|+..+. +|++..-+|-+.|+|.|.+. ..+. .+ ..|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~---~l--~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFR---TL--NEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSCS---SC--CTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCCC---CC--CCCCEEEEEEEE
Confidence 3799999984 46666556788999999994 2222 23 489999998754
No 124
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=45.37 E-value=25 Score=26.71 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=35.0
Q ss_pred EEEEEEEeC-ceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 380 EGTVKKIYP-YGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 380 ~G~V~~I~~-~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
.|+|+...+ .|. ||.-.+ |-+-|+|.|.+....+ ..++.||.|...+.
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~-g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~ 51 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDE-GGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQ 51 (66)
T ss_dssp CEEEEEEETTTTEEEEEETT-SCBCBBCSSSSCCSSC----CCCCSSSEEEEEEE
T ss_pred cEEEEEEECCCCEEEEecCC-CceEEEEhHHccccCC----CCCCCCCEEEEEEE
Confidence 588998864 333 666665 6789999999864321 45889999998875
No 125
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=44.76 E-value=56 Score=24.90 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=33.3
Q ss_pred hCCCeEEEEEEEEECCeE-EEEECCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEE
Q 011538 295 QLNEPIEVKFTEWNTGGL-LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (483)
Q Consensus 295 k~GeiV~GkV~~v~k~G~-fV~I~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID 354 (483)
+.|+.++.+|.+....|- +..++|...|+|.. .+|+.|.++|.+..
T Consensus 14 ~~~~~~~v~I~~l~~~G~Gva~~~g~~vfV~~a--------------lPGE~V~v~i~k~k 60 (70)
T 1yvc_A 14 EAGKEYEVTIEDMGKGGDGIARIDGFVVFVPNA--------------EKGSVINVKVTAVK 60 (70)
T ss_dssp CTTCEEEEECCEECTTSCEEEEETTEEEEETTC--------------CTTCEEEEEEEEEC
T ss_pred cCCCEEEEEEEEcCCCccEEEEECCEEEEccCC--------------CCCCEEEEEEEEee
Confidence 457777778877766543 44567877888842 47999999998864
No 126
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=44.10 E-value=28 Score=27.86 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=38.4
Q ss_pred CCeEEEEEEEEECCeEE-EEEC-CeEEEeecccc--ccccCChhhhhhhcCCEEEEEEEEEECCCCceee
Q 011538 297 NEPIEVKFTEWNTGGLL-TRIE-GLRAFLPKAEL--LSRVNNFTELKEKVGRRMYVQITRINEDTNDLIL 362 (483)
Q Consensus 297 GeiV~GkV~~v~k~G~f-V~I~-Gi~gFVP~Sel--~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiL 362 (483)
--.++|+|++..++|.| |.+. |..-..+.+=- ..++. -.+|+.|.+.+...|..+++|+.
T Consensus 13 ~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~------Il~GD~V~ve~~~yd~~kgrIi~ 76 (79)
T 3i4o_A 13 AIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIR------ILPEDRVVVELSPYDLSRGRIVY 76 (79)
T ss_dssp CSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCC------CCTTCEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCcc------CCCCCEEEEEECccCCCcEEEEE
Confidence 34589999999977765 8884 63333333222 11221 15899999988777766677654
No 127
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=41.17 E-value=72 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=33.9
Q ss_pred eEEEEEEEEEC---CeEEEEECC-eEEEeeccccccccCChhhhhhhcCCEEEEEEEE
Q 011538 299 PIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 299 iV~GkV~~v~k---~G~fV~I~G-i~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
..+|+|+..+. +|++..-+| -. |+|.|.+...- .+ ..|+.|.+.+..
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g----~l--~~G~~V~F~~~~ 52 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD----LI--KKDAAVTFEPTT 52 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG----GC--CTTCEEEEEEEE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC----CC--CCCCEEEEEEEe
Confidence 46899999974 477766555 55 99999994221 23 589999999754
No 128
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.21 E-value=1.7e+02 Score=25.70 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=45.3
Q ss_pred cEEEEEEEEEeC---ceEEEEE-------CCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEeCCCeEEEEEec
Q 011538 377 TLLEGTVKKIYP---YGAQIRI-------GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD 446 (483)
Q Consensus 377 ~iv~G~V~~I~~---~GaFV~I-------~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vdek~rI~LSLK~ 446 (483)
....|+|+-... ||.+..- .+ +-+-|+|.+.|....+ ..+..||.|...|.. .+++.-...+..
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~-g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~-g~kG~~A~~V~~ 81 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDP-PVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKK-SAKGLESIRVTG 81 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEE-EEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEE-ETTEEEEEEEES
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCC-CccEEEEhHHhcccCC----ccCCCCCEEEEEEEE-ccccchhhcccc
Confidence 346899999854 4544432 13 5799999999864322 358899999998875 355554555554
Q ss_pred CCCCcC
Q 011538 447 LESEPG 452 (483)
Q Consensus 447 ~~~dPw 452 (483)
....|.
T Consensus 82 pgg~pv 87 (148)
T 3ts2_A 82 PGGVFC 87 (148)
T ss_dssp GGGCCC
T ss_pred cCCccc
Confidence 444343
No 129
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=39.88 E-value=21 Score=27.22 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=34.0
Q ss_pred EEEEEEEEC---CeEEEEECCeEEEeeccccc-cccCChhhhhhhcCCEEEEEEEE
Q 011538 301 EVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 301 ~GkV~~v~k---~G~fV~I~Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
+|+|+..+. +|++..-+|-+.|+|.+.+. ..+.. + ..|+.|.+.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKT---L--KEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCC---C--CSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCC---C--CCCCEEEEEEEE
Confidence 589999874 47766556888999999994 22222 3 489999998643
No 130
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.25 E-value=51 Score=25.80 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=34.5
Q ss_pred EEEEEEEEC---CeEEEEECCeEEEeeccccc-cccCChhhhhhhcCCEEEEEEE
Q 011538 301 EVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQIT 351 (483)
Q Consensus 301 ~GkV~~v~k---~G~fV~I~Gi~gFVP~Sel~-~rv~~~~~l~~~VGq~V~vkVl 351 (483)
+|+|+..+. +|++..-+|-+.|+|.|.+. ..- .+.+ ..|+.|.+.+.
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g--~~~l--~~G~~V~F~~~ 52 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKD--EGKL--VKGSMVHFDPT 52 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGG--GTTC--CTTSEEEEEEE
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCC--CCCC--CCCCEEEEEEE
Confidence 689999974 47776667788999999995 321 1223 58999999874
No 131
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.13 E-value=77 Score=26.83 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=44.5
Q ss_pred cEEEEEEEEEeCceEE-EEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe--CCCeEEEEEe
Q 011538 377 TLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM--FPDKISLSIA 445 (483)
Q Consensus 377 ~iv~G~V~~I~~~GaF-V~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd--ek~rI~LSLK 445 (483)
..+.|+|+...+.+.| |.+.+ |..-++|++-=-. + .-.++.||.|.|.....+ .+++|..-++
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~n-G~~~la~i~GK~R----k-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~ 80 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQ-GQRFLVSMPSKYR----K-NIWIKRGDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTT-SCEEEEECCTTCC----S-CCCCCSSCEEEEEECSSCSSCCEEEEEECC
T ss_pred CeEEEEEEEeCCCCEEEEEeCC-CCEEEEEechhhc----c-cEEEcCCCEEEEEecccCCcceEEEEEEeC
Confidence 4567999999998887 77777 7889999876332 2 344889999998765443 3456655544
No 132
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=34.09 E-value=97 Score=28.77 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEEEEEEEEeCceEEEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEEEEe
Q 011538 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435 (483)
Q Consensus 378 iv~G~V~~I~~~GaFV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi~vd 435 (483)
.+.|+|..+.+..+.|+.+|.|+.-+++.+.++ .....|+.+...+...-
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~--------~l~~~g~~v~l~~~~~v 53 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFY--------ELPEAGQEAIVFTHFVV 53 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHT--------TCCCTTSEEEEEEEEEE
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHH--------hcCCCCCeEEEEEEEEE
Confidence 478999999999999999987777777666553 22357999999888663
No 133
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=32.88 E-value=66 Score=23.28 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=28.3
Q ss_pred cEEEEEEEEEeCceEE----EEECCCc-eEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 377 TLLEGTVKKIYPYGAQ----IRIGDSN-RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 377 ~iv~G~V~~I~~~GaF----V~I~~~g-i~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
-.+.|+|.+|...|.. +++++ + +...+....+ . .-.+++|+.|.+.|.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~-~~l~a~it~~s~-----~--~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKG-TELVAAITIDSV-----A--DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETT-EEEEEEEEHHHH-----H--HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCC-CEEEEEeCHHHH-----H--hCCCCCCCEEEEEEe
Confidence 3688999999887733 33343 2 2222322211 1 124899999998764
No 134
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=32.87 E-value=1.2e+02 Score=24.49 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=34.3
Q ss_pred eEEEEEEEEEC---CeEEEEE--------CCeEEEeecccc-ccccCChhhhhhhcCCEEEEEEEE
Q 011538 299 PIEVKFTEWNT---GGLLTRI--------EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 299 iV~GkV~~v~k---~G~fV~I--------~Gi~gFVP~Sel-~~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
..+|+|+-.+. +|++..- +|-+.|+|.|.+ ..-++ .| ..|+.|.+.|..
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~---~L--~eG~~V~f~v~~ 68 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFR---SL--KEGEPVEFTFKK 68 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSC---CC--CTTCEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCC---cc--CCCCEEEEEEEE
Confidence 56799987764 4777532 357899999999 33333 23 479999998765
No 135
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=30.44 E-value=7.8 Score=36.98 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCCCcccceeecCC------cccccc-cccccchhhhhHHhhhheeeeeecCCccccccc
Q 011538 19 APPLSTCSFVQNGN------AKYPLQ-QSRKFHSFAASFRFLRSTHIVFCSQKDVFDDLS 71 (483)
Q Consensus 19 ~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (483)
++..|+|.-++.-- -||.-+ -.++|.-|.-++.++++.+ +-+|++++|=
T Consensus 65 s~~~s~~~~i~g~iFy~~h~~Ky~~~dfe~Ay~ef~~sr~~L~~i~----~lkdl~~~F~ 120 (246)
T 2ph7_A 65 SLHFSEKVKIGDVLFYHPHVIKPEKEDFEQAYFEYKQSKKFLDAFD----IMREVTDRFF 120 (246)
T ss_dssp -CCCCEEEEETTEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT
T ss_pred cccchheEEECCEEEEeccCCCCChHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHH
Confidence 56678885443211 122111 3567888888998887752 3456655554
No 136
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=29.85 E-value=42 Score=27.60 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=35.5
Q ss_pred CCeEEEEEEEEEC-CeEEEEECC-eEEEeeccccccccCChhhhhhhcCCEEEEEEE
Q 011538 297 NEPIEVKFTEWNT-GGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQIT 351 (483)
Q Consensus 297 GeiV~GkV~~v~k-~G~fV~I~G-i~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl 351 (483)
.....|+|+...+ +|++..-+| -+.|+|.+.+.... +.+ ..|+.|.+.+.
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~~---~~L--~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDL---ETL--QPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSCT---TSC--CSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCceEEecCCCCceEEEEehHhcccc---CCC--CCCCEEEEEEE
Confidence 5678899988844 366554444 89999999994322 223 48999999873
No 137
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=29.70 E-value=21 Score=29.14 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=36.3
Q ss_pred cEEEEEEEEEeCceE-EEEECCCceEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 377 TLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 377 ~iv~G~V~~I~~~Ga-FV~I~~~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
....|+|+... .|. ||.-.+.+-+-|+|.+.+... ..+++||.|...|.
T Consensus 7 ~r~~G~Vk~f~-KGfGFI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~ 56 (89)
T 1x65_A 7 GREMGVIAAMR-DGFGFIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVV 56 (89)
T ss_dssp CCEEEEEEECC-TTBCEEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCB
T ss_pred cceeEEEEEEe-CCcceeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEE
Confidence 35689999985 443 666644257899999998631 56999999998775
No 138
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=29.05 E-value=68 Score=23.50 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=28.7
Q ss_pred cEEEEEEEEEeCceEE----EEECC-CceEEEEeccCcCcccccCcccccCCCCEEEEEEE
Q 011538 377 TLLEGTVKKIYPYGAQ----IRIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (483)
Q Consensus 377 ~iv~G~V~~I~~~GaF----V~I~~-~gi~GLlhiSels~~~i~~~~~~~kvGd~VkVkVi 432 (483)
-.+.|+|.+|...|.. +++++ ..+...+..... . .-.+++|+.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~-----~--~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSV-----E--ELGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHH-----H--HHTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHH-----H--HCCCCCCCEEEEEEe
Confidence 3589999999887743 33433 113333332221 1 123899999998764
No 139
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=27.39 E-value=2.1e+02 Score=22.05 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhHHHHHHhhCCCeEEEEEEEEEC--CeEEEEE-CCeEEEee
Q 011538 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT--GGLLTRI-EGLRAFLP 324 (483)
Q Consensus 248 ~~~~~~~~kVGd~V~v~Vi~~d~~G~iiLS~k~~~~~~~w~~L~~~~k~GeiV~GkV~~v~k--~G~fV~I-~Gi~gFVP 324 (483)
...+...|++|+.|.|+ ..-|....|+|++|++ +-++|++ +|..-.+.
T Consensus 7 ~~~~~~~f~vGddVLA~-----------------------------wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 7 GKKPACKFEEGQDVLAR-----------------------------WSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp CCCCCCCSCTTCEEEEE-----------------------------CTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cccccccccCCCEEEEE-----------------------------EccCcEEEeEEEEEccCCcEEEEEEccCCEEEEE
Q ss_pred cccc
Q 011538 325 KAEL 328 (483)
Q Consensus 325 ~Sel 328 (483)
..+|
T Consensus 58 ~kdi 61 (66)
T 2eqj_A 58 WKDI 61 (66)
T ss_dssp TTTE
T ss_pred eecc
No 140
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=24.82 E-value=2.5e+02 Score=25.17 Aligned_cols=97 Identities=10% Similarity=-0.038 Sum_probs=61.5
Q ss_pred CCCeEEEEEEEEECCeEEEEE--CCeEEEeeccccccccCChhhhhhhcCCEEEEEEEEEECCCCceeechhhHhhhcCC
Q 011538 296 LNEPIEVKFTEWNTGGLLTRI--EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNL 373 (483)
Q Consensus 296 ~GeiV~GkV~~v~k~G~fV~I--~Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~e~~rLiLS~K~~~e~~~l 373 (483)
.|....|+|+++.+..+.|.+ .|....+|.+++.. +. .++.....+.++|++-.|++..+. .-+........++
T Consensus 65 d~~wyRa~V~~v~~~~~~V~~vDyG~~~~v~~~~l~~-l~--~~~~~~p~~a~~~~Lagv~~p~~~-~w~~eA~~~l~~l 140 (218)
T 2wac_A 65 DNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAA-LP--PAFSSEKPYATEYALALVALPTDN-EDKEEALRAFSED 140 (218)
T ss_dssp TCCEEEEEEEEEETTEEEEEETTTCCEEEEEGGGEEE-CC--GGGSSSCCSEEEEEETTEECCSSH-HHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEecCCeEEEEEEecCCeEEEchHHccc-CC--hhhccCCcceeEEEECCEECCCCc-chHHHHHHHHHHH
Confidence 477899999999987777776 38888899998831 11 123336799999999988853311 0111111011234
Q ss_pred CCCcEEEEEEEEEeCce-EEEEEC
Q 011538 374 REGTLLEGTVKKIYPYG-AQIRIG 396 (483)
Q Consensus 374 ~vG~iv~G~V~~I~~~G-aFV~I~ 396 (483)
-.|..+.++|....... ..|.+.
T Consensus 141 v~~k~v~~~v~~~d~g~~~~V~L~ 164 (218)
T 2wac_A 141 VLNHKVQLNVELKVTGSPNLATLR 164 (218)
T ss_dssp HBTCEEEEEEEECCTTSCEEEEEE
T ss_pred hcCCEEEEEEEEEcCCceEEEEEE
Confidence 45888888888766444 556664
No 141
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=29.34 E-value=17 Score=28.10 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=35.3
Q ss_pred eEEEEEEEEEC---CeEEEEEC-CeEEEeeccccccccCChhhhhhhcCCEEEEEEEE
Q 011538 299 PIEVKFTEWNT---GGLLTRIE-GLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (483)
Q Consensus 299 iV~GkV~~v~k---~G~fV~I~-Gi~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ 352 (483)
.++|+|+..+. +|++..-+ |-+.|+|.|.+... ..+.+ ..|+.|.+.+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~--g~~~l--~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA--GLHSL--EEGQDVIFDLEE 57 (70)
Confidence 47789988864 57776655 58999999999321 11223 489999998754
No 142
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=23.54 E-value=2.4e+02 Score=26.08 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=37.2
Q ss_pred eEEEEEEEEECCeEEEEECC--eEEEeeccccccccCChhhhhhhcCCEEEEEEEEEEC
Q 011538 299 PIEVKFTEWNTGGLLTRIEG--LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINE 355 (483)
Q Consensus 299 iV~GkV~~v~k~G~fV~I~G--i~gFVP~Sel~~rv~~~~~l~~~VGq~V~vkVl~ID~ 355 (483)
.+.|+|..+.+..++|+++| +..++|.+.+.. ++ .+|+.+..++..+=+
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~~-l~-------~~g~~v~l~~~~~vR 54 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYE-LP-------EAGQEAIVFTHFVVR 54 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHTT-CC-------CTTSEEEEEEEEEEE
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHHh-cC-------CCCCeEEEEEEEEEe
Confidence 57999999999999999986 577888665531 11 369998888776643
Done!