Query 011540
Match_columns 483
No_of_seqs 295 out of 1508
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 5E-114 1E-118 910.3 40.1 424 49-482 2-425 (484)
2 PRK06830 diphosphate--fructose 100.0 9E-105 2E-109 836.7 38.2 390 86-481 17-415 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 2E-103 4E-108 830.7 37.7 370 104-479 45-416 (459)
4 PLN02884 6-phosphofructokinase 100.0 2.9E-96 6E-101 767.5 37.4 349 127-481 36-386 (411)
5 PRK06555 pyrophosphate--fructo 100.0 4.1E-85 8.8E-90 679.2 35.1 328 145-481 4-378 (403)
6 TIGR02483 PFK_mixed phosphofru 100.0 4E-85 8.6E-90 667.4 33.7 316 146-480 1-324 (324)
7 PRK14072 6-phosphofructokinase 100.0 3.6E-84 7.8E-89 679.4 34.0 325 144-481 3-357 (416)
8 PRK14071 6-phosphofructokinase 100.0 4.4E-84 9.5E-89 668.0 33.7 317 144-481 4-336 (360)
9 TIGR02478 6PF1K_euk 6-phosphof 100.0 5.2E-84 1.1E-88 716.5 31.6 384 69-481 299-715 (745)
10 TIGR02482 PFKA_ATP 6-phosphofr 100.0 2.1E-83 4.5E-88 648.3 32.7 295 146-480 1-301 (301)
11 cd00363 PFK Phosphofructokinas 100.0 1.7E-82 3.6E-87 652.0 34.8 310 145-481 1-319 (338)
12 cd00764 Eukaryotic_PFK Phospho 100.0 2.6E-83 5.7E-88 708.5 30.9 380 69-481 302-717 (762)
13 cd00763 Bacterial_PFK Phosphof 100.0 2.9E-82 6.3E-87 644.3 32.2 294 145-481 1-300 (317)
14 PRK03202 6-phosphofructokinase 100.0 2.9E-81 6.3E-86 637.8 33.6 293 145-480 2-300 (320)
15 TIGR02477 PFKA_PPi diphosphate 100.0 5.5E-80 1.2E-84 662.8 36.0 392 80-481 6-473 (539)
16 PRK07085 diphosphate--fructose 100.0 4.4E-79 9.5E-84 657.2 34.5 392 79-481 10-482 (555)
17 COG0205 PfkA 6-phosphofructoki 100.0 6.4E-79 1.4E-83 623.0 30.5 306 144-481 2-314 (347)
18 cd00765 Pyrophosphate_PFK Phos 100.0 7E-78 1.5E-82 646.0 34.0 393 80-481 11-485 (550)
19 PLN02251 pyrophosphate-depende 100.0 1.9E-76 4.1E-81 636.2 36.3 390 80-481 37-500 (568)
20 cd00764 Eukaryotic_PFK Phospho 100.0 8.9E-77 1.9E-81 656.6 34.4 313 143-482 2-342 (762)
21 PLN03028 pyrophosphate--fructo 100.0 8.7E-77 1.9E-81 643.1 33.5 393 80-480 12-481 (610)
22 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.5E-76 3.3E-81 656.9 35.0 311 145-482 1-339 (745)
23 PF00365 PFK: Phosphofructokin 100.0 2E-74 4.4E-79 579.0 24.8 275 145-457 1-282 (282)
24 PTZ00468 phosphofructokinase f 100.0 2.2E-73 4.8E-78 644.3 33.7 391 80-481 39-501 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 2E-72 4.2E-77 640.4 35.8 338 143-481 176-572 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 8.3E-65 1.8E-69 578.1 30.7 334 142-480 834-1270(1419)
27 PTZ00468 phosphofructokinase f 100.0 2.6E-56 5.7E-61 505.7 30.1 333 143-480 674-1132(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 5.4E-50 1.2E-54 432.1 5.3 413 69-481 43-510 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 2.2E-46 4.7E-51 404.1 17.8 373 49-457 264-662 (666)
30 PRK04761 ppnK inorganic polyph 93.0 0.29 6.2E-06 49.1 7.1 61 225-300 11-80 (246)
31 PRK04885 ppnK inorganic polyph 91.6 0.51 1.1E-05 47.8 7.0 56 233-301 35-92 (265)
32 PRK14077 pnk inorganic polypho 90.9 0.63 1.4E-05 47.7 7.0 54 233-301 64-119 (287)
33 PRK00561 ppnK inorganic polyph 90.3 0.39 8.6E-06 48.5 4.9 61 224-299 19-87 (259)
34 PRK03501 ppnK inorganic polyph 90.2 0.8 1.7E-05 46.4 6.9 54 233-300 39-95 (264)
35 PF01513 NAD_kinase: ATP-NAD k 88.5 0.27 5.8E-06 49.9 2.2 62 225-301 68-131 (285)
36 PRK03372 ppnK inorganic polyph 88.4 0.62 1.3E-05 48.2 4.7 54 233-301 72-127 (306)
37 PRK01911 ppnK inorganic polyph 88.2 0.84 1.8E-05 46.9 5.5 55 233-302 64-120 (292)
38 TIGR01918 various_sel_PB selen 88.2 0.89 1.9E-05 48.8 5.8 122 143-268 222-370 (431)
39 TIGR01917 gly_red_sel_B glycin 88.1 1.7 3.7E-05 46.8 7.8 122 143-268 222-370 (431)
40 PLN02929 NADH kinase 88.1 0.88 1.9E-05 47.0 5.5 63 232-300 63-135 (301)
41 PRK14075 pnk inorganic polypho 87.6 1.5 3.2E-05 44.1 6.8 52 232-301 40-93 (256)
42 PRK02649 ppnK inorganic polyph 87.4 0.93 2E-05 46.8 5.3 53 233-300 68-122 (305)
43 PRK04539 ppnK inorganic polyph 87.2 0.93 2E-05 46.6 5.1 53 233-300 68-122 (296)
44 PRK03378 ppnK inorganic polyph 86.8 1.3 2.7E-05 45.6 5.9 52 233-299 63-116 (292)
45 COG3199 Predicted inorganic po 86.1 1.1 2.4E-05 46.9 5.0 51 220-276 87-137 (355)
46 cd06321 PBP1_ABC_sugar_binding 85.6 24 0.00053 33.9 14.0 127 146-314 1-128 (271)
47 PLN02935 Bifunctional NADH kin 85.0 1.3 2.9E-05 48.6 5.2 53 233-300 262-316 (508)
48 PRK01231 ppnK inorganic polyph 84.0 1.6 3.5E-05 44.8 5.1 54 233-301 62-117 (295)
49 cd01537 PBP1_Repressors_Sugar_ 82.9 41 0.0009 31.4 16.5 127 146-316 1-127 (264)
50 PRK11914 diacylglycerol kinase 82.1 2.5 5.3E-05 43.0 5.5 69 220-296 51-120 (306)
51 COG1570 XseA Exonuclease VII, 82.0 5.7 0.00012 43.1 8.4 96 141-268 132-231 (440)
52 PF00532 Peripla_BP_1: Peripla 81.7 14 0.0003 37.1 10.7 171 146-368 3-185 (279)
53 PRK13054 lipid kinase; Reviewe 81.2 8.2 0.00018 39.2 9.0 89 219-318 42-131 (300)
54 PRK03708 ppnK inorganic polyph 81.0 1.7 3.7E-05 44.2 3.9 52 232-299 56-109 (277)
55 PRK13337 putative lipid kinase 80.9 5.3 0.00011 40.7 7.5 89 219-320 43-132 (304)
56 PRK02231 ppnK inorganic polyph 80.8 1.5 3.2E-05 44.7 3.4 52 233-299 42-95 (272)
57 PRK02645 ppnK inorganic polyph 80.6 1.9 4.1E-05 44.5 4.1 55 233-301 57-114 (305)
58 PRK02155 ppnK NAD(+)/NADH kina 80.2 3.1 6.6E-05 42.7 5.4 53 233-300 63-117 (291)
59 PRK13055 putative lipid kinase 79.8 4.6 0.0001 41.8 6.7 61 220-287 46-107 (334)
60 PLN02958 diacylglycerol kinase 77.7 13 0.00029 40.7 9.8 99 177-278 112-215 (481)
61 PRK14076 pnk inorganic polypho 77.1 3.7 8.1E-05 45.9 5.4 53 233-300 348-402 (569)
62 PF02601 Exonuc_VII_L: Exonucl 75.6 23 0.00049 36.3 10.3 102 140-273 10-119 (319)
63 PRK06186 hypothetical protein; 75.5 5.2 0.00011 39.9 5.3 58 233-306 53-112 (229)
64 COG1609 PurR Transcriptional r 75.4 47 0.001 34.3 12.7 162 146-363 60-234 (333)
65 COG0061 nadF NAD kinase [Coenz 75.4 5.6 0.00012 40.5 5.7 44 232-290 54-97 (281)
66 cd06281 PBP1_LacI_like_5 Ligan 74.3 85 0.0018 30.2 17.2 90 146-273 1-90 (269)
67 PRK10014 DNA-binding transcrip 73.6 1E+02 0.0023 30.9 19.8 86 145-268 65-150 (342)
68 PRK01185 ppnK inorganic polyph 72.7 5 0.00011 40.8 4.6 51 233-301 52-104 (271)
69 PLN02727 NAD kinase 71.5 3.4 7.4E-05 48.5 3.4 54 233-301 743-798 (986)
70 TIGR03702 lip_kinase_YegS lipi 71.5 13 0.00028 37.6 7.3 61 215-277 34-95 (293)
71 PRK13059 putative lipid kinase 70.5 12 0.00026 38.0 6.8 61 228-294 51-111 (295)
72 PRK00861 putative lipid kinase 70.4 8.7 0.00019 38.9 5.8 68 219-294 43-110 (300)
73 TIGR00147 lipid kinase, YegS/R 70.1 9.2 0.0002 38.4 5.8 82 224-319 48-131 (293)
74 cd08180 PDD 1,3-propanediol de 69.5 8.5 0.00018 39.8 5.5 54 220-273 65-120 (332)
75 PRK10703 DNA-binding transcrip 68.5 1.3E+02 0.0029 30.1 18.8 69 145-246 60-128 (341)
76 COG1597 LCB5 Sphingosine kinas 68.3 14 0.0003 38.0 6.7 108 178-297 4-116 (301)
77 cd08173 Gro1PDH Sn-glycerol-1- 68.0 9.5 0.00021 39.5 5.6 54 220-278 65-118 (339)
78 PRK13057 putative lipid kinase 67.8 8.9 0.00019 38.7 5.2 86 220-320 38-123 (287)
79 cd08170 GlyDH Glycerol dehydro 67.8 9.1 0.0002 39.8 5.4 52 220-276 64-115 (351)
80 cd08551 Fe-ADH iron-containing 67.7 10 0.00022 39.6 5.8 56 220-275 67-135 (370)
81 PF00465 Fe-ADH: Iron-containi 67.7 6.5 0.00014 41.1 4.3 58 220-277 65-136 (366)
82 cd08172 GlyDH-like1 Glycerol d 67.2 8.5 0.00018 40.0 5.0 55 220-279 63-117 (347)
83 PRK10423 transcriptional repre 67.2 1.4E+02 0.003 29.7 18.5 68 145-245 57-124 (327)
84 PRK12361 hypothetical protein; 66.9 15 0.00032 40.7 7.1 53 220-277 284-336 (547)
85 PRK00843 egsA NAD(P)-dependent 64.3 12 0.00025 39.2 5.3 52 220-276 74-125 (350)
86 cd08195 DHQS Dehydroquinate sy 63.6 7.3 0.00016 40.5 3.7 64 220-289 69-135 (345)
87 PRK00002 aroB 3-dehydroquinate 63.4 9.9 0.00021 39.8 4.7 64 220-289 76-142 (358)
88 TIGR00237 xseA exodeoxyribonuc 63.2 57 0.0012 35.3 10.5 42 233-274 187-232 (432)
89 cd01538 PBP1_ABC_xylose_bindin 63.1 1.6E+02 0.0034 28.9 21.5 86 146-268 1-86 (288)
90 cd08177 MAR Maleylacetate redu 62.6 13 0.00029 38.4 5.4 51 220-275 64-114 (337)
91 cd07766 DHQ_Fe-ADH Dehydroquin 62.4 12 0.00026 38.4 5.0 54 220-276 65-118 (332)
92 PRK00286 xseA exodeoxyribonucl 62.0 60 0.0013 34.9 10.4 115 141-290 132-255 (438)
93 cd08189 Fe-ADH5 Iron-containin 61.8 17 0.00036 38.3 6.0 53 220-272 70-136 (374)
94 PRK10355 xylF D-xylose transpo 61.6 1.1E+02 0.0025 31.2 12.0 93 143-273 24-117 (330)
95 cd08186 Fe-ADH8 Iron-containin 61.2 16 0.00035 38.6 5.8 52 220-271 71-136 (383)
96 TIGR01357 aroB 3-dehydroquinat 60.7 15 0.00033 38.1 5.4 50 220-272 65-117 (344)
97 cd06304 PBP1_BmpA_like Peripla 60.4 1.7E+02 0.0036 28.3 19.2 64 146-243 1-66 (260)
98 cd08194 Fe-ADH6 Iron-containin 59.6 17 0.00037 38.2 5.7 53 220-272 67-132 (375)
99 PRK15458 tagatose 6-phosphate 59.5 2.2E+02 0.0049 31.0 13.9 139 146-313 16-172 (426)
100 cd08179 NADPH_BDH NADPH-depend 59.2 19 0.0004 38.0 5.8 54 220-273 68-137 (375)
101 cd08199 EEVS 2-epi-5-epi-valio 59.1 12 0.00026 39.3 4.4 66 220-291 71-140 (354)
102 cd07995 TPK Thiamine pyrophosp 58.8 80 0.0017 30.4 9.7 91 148-245 1-102 (208)
103 TIGR02638 lactal_redase lactal 57.6 19 0.00041 38.0 5.6 55 220-274 73-142 (379)
104 cd03822 GT1_ecORF704_like This 57.4 1.1E+02 0.0023 30.1 10.6 85 146-243 1-86 (366)
105 PRK05670 anthranilate synthase 56.7 22 0.00048 33.6 5.4 50 229-291 39-88 (189)
106 PRK13951 bifunctional shikimat 56.2 12 0.00026 41.2 3.9 66 221-292 222-290 (488)
107 cd08550 GlyDH-like Glycerol_de 55.7 18 0.00039 37.7 5.0 56 220-280 64-119 (349)
108 cd08181 PPD-like 1,3-propanedi 55.7 23 0.00049 37.1 5.7 53 220-272 70-134 (357)
109 PRK05637 anthranilate synthase 55.6 29 0.00064 33.7 6.1 52 227-291 38-89 (208)
110 TIGR02810 agaZ_gatZ D-tagatose 55.5 2.9E+02 0.0062 30.1 13.8 139 146-313 12-168 (420)
111 cd06302 PBP1_LsrB_Quorum_Sensi 55.5 2.2E+02 0.0047 28.2 15.0 86 146-268 1-87 (298)
112 COG0504 PyrG CTP synthase (UTP 55.4 23 0.00049 39.2 5.7 72 234-321 344-421 (533)
113 PRK09423 gldA glycerol dehydro 55.4 21 0.00045 37.5 5.4 51 221-276 72-122 (366)
114 cd08178 AAD_C C-terminal alcoh 55.3 27 0.00059 37.1 6.4 34 220-253 65-98 (398)
115 PRK15454 ethanol dehydrogenase 55.3 23 0.00049 37.8 5.7 53 220-272 93-158 (395)
116 cd08182 HEPD Hydroxyethylphosp 55.2 21 0.00045 37.4 5.4 54 220-273 64-134 (367)
117 cd08193 HVD 5-hydroxyvalerate 54.9 23 0.0005 37.3 5.7 53 220-272 70-135 (376)
118 cd06533 Glyco_transf_WecG_TagA 54.5 44 0.00095 31.3 6.9 87 144-242 46-133 (171)
119 cd01545 PBP1_SalR Ligand-bindi 54.1 2E+02 0.0043 27.3 13.5 46 222-272 45-90 (270)
120 PLN02834 3-dehydroquinate synt 54.1 15 0.00032 39.9 4.1 65 220-290 147-214 (433)
121 PRK10586 putative oxidoreducta 53.8 17 0.00037 38.4 4.4 59 221-285 75-133 (362)
122 TIGR00288 conserved hypothetic 53.6 24 0.00053 33.3 5.0 50 219-271 88-140 (160)
123 PRK15138 aldehyde reductase; P 53.6 23 0.0005 37.6 5.5 52 220-271 72-139 (387)
124 PF00781 DAGK_cat: Diacylglyce 53.2 9.5 0.00021 33.7 2.1 65 221-291 41-108 (130)
125 TIGR00566 trpG_papA glutamine 53.2 25 0.00053 33.4 5.1 52 227-291 37-88 (188)
126 PRK09860 putative alcohol dehy 52.4 29 0.00063 36.8 6.0 55 220-274 75-142 (383)
127 cd08196 DHQS-like1 Dehydroquin 52.4 18 0.00039 38.0 4.4 66 220-291 60-128 (346)
128 cd06292 PBP1_LacI_like_10 Liga 52.3 2.2E+02 0.0047 27.2 13.6 87 147-268 2-89 (273)
129 cd08197 DOIS 2-deoxy-scyllo-in 52.1 22 0.00047 37.5 4.9 63 220-288 68-133 (355)
130 cd08185 Fe-ADH1 Iron-containin 51.6 25 0.00053 37.1 5.3 54 220-273 70-141 (380)
131 PF03808 Glyco_tran_WecB: Glyc 51.6 1.4E+02 0.003 27.9 9.8 37 145-187 49-85 (172)
132 cd06273 PBP1_GntR_like_1 This 51.3 2.2E+02 0.0048 27.0 11.7 41 222-268 44-84 (268)
133 cd06320 PBP1_allose_binding Pe 50.9 2.3E+02 0.0051 27.1 17.1 47 222-272 46-92 (275)
134 cd08198 DHQS-like2 Dehydroquin 50.3 24 0.00052 37.5 4.9 64 222-291 85-151 (369)
135 cd01542 PBP1_TreR_like Ligand- 50.3 2.2E+02 0.0047 26.9 11.2 83 147-268 2-84 (259)
136 cd08176 LPO Lactadehyde:propan 50.2 31 0.00068 36.3 5.8 56 220-275 72-140 (377)
137 PRK10624 L-1,2-propanediol oxi 50.0 30 0.00066 36.5 5.7 54 220-273 74-142 (382)
138 COG0206 FtsZ Cell division GTP 49.9 42 0.00091 35.4 6.5 206 142-375 9-232 (338)
139 cd08171 GlyDH-like2 Glycerol d 49.6 28 0.0006 36.2 5.2 52 220-276 65-116 (345)
140 CHL00101 trpG anthranilate syn 49.2 32 0.00068 32.7 5.1 49 229-290 39-87 (190)
141 PF04263 TPK_catalytic: Thiami 48.8 71 0.0015 28.6 7.0 87 178-265 18-120 (123)
142 COG2910 Putative NADH-flavin r 48.6 47 0.001 32.5 6.1 94 145-248 1-111 (211)
143 PF02645 DegV: Uncharacterised 48.4 65 0.0014 32.5 7.5 69 195-265 40-113 (280)
144 cd06314 PBP1_tmGBP Periplasmic 47.7 2.6E+02 0.0057 26.8 15.3 42 222-268 44-85 (271)
145 cd08192 Fe-ADH7 Iron-containin 47.4 37 0.0008 35.6 5.7 55 220-274 68-139 (370)
146 cd08184 Fe-ADH3 Iron-containin 47.3 41 0.00089 35.3 6.1 56 220-275 65-136 (347)
147 cd06299 PBP1_LacI_like_13 Liga 47.3 2.6E+02 0.0055 26.5 16.1 121 146-313 1-122 (265)
148 cd03409 Chelatase_Class_II Cla 46.7 1.6E+02 0.0035 24.2 8.5 77 148-256 3-87 (101)
149 cd08183 Fe-ADH2 Iron-containin 46.6 34 0.00073 36.0 5.4 52 220-271 62-130 (374)
150 cd06317 PBP1_ABC_sugar_binding 46.4 2.7E+02 0.0058 26.5 14.5 43 222-268 45-87 (275)
151 cd06349 PBP1_ABC_ligand_bindin 45.7 88 0.0019 31.5 8.0 104 156-267 115-221 (340)
152 cd08187 BDH Butanol dehydrogen 45.2 39 0.00085 35.6 5.6 56 220-275 73-141 (382)
153 smart00046 DAGKc Diacylglycero 45.2 20 0.00044 31.6 2.9 42 233-277 49-93 (124)
154 TIGR01481 ccpA catabolite cont 44.8 3.3E+02 0.0071 27.1 17.8 84 145-268 60-144 (329)
155 PF07905 PucR: Purine cataboli 44.4 60 0.0013 28.7 5.8 71 197-270 31-107 (123)
156 TIGR01162 purE phosphoribosyla 44.4 41 0.00088 31.7 4.9 54 213-272 33-86 (156)
157 PF05036 SPOR: Sporulation rel 44.1 37 0.00081 26.2 4.0 50 213-262 9-71 (76)
158 PLN02335 anthranilate synthase 43.9 38 0.00083 33.2 4.9 47 229-288 58-104 (222)
159 cd01391 Periplasmic_Binding_Pr 43.5 2.6E+02 0.0056 25.5 17.0 138 220-372 45-191 (269)
160 COG1454 EutG Alcohol dehydroge 43.3 48 0.001 35.5 5.8 52 221-272 74-138 (377)
161 COG0041 PurE Phosphoribosylcar 43.2 61 0.0013 30.6 5.8 49 216-270 40-88 (162)
162 TIGR01916 F420_cofE F420-0:gam 42.3 1.3E+02 0.0027 30.5 8.2 93 307-409 88-198 (243)
163 TIGR03405 Phn_Fe-ADH phosphona 42.2 51 0.0011 34.5 5.8 53 220-272 65-136 (355)
164 cd08188 Fe-ADH4 Iron-containin 42.1 59 0.0013 34.3 6.3 52 221-272 73-137 (377)
165 PRK03692 putative UDP-N-acetyl 41.9 86 0.0019 31.4 7.1 86 144-242 105-191 (243)
166 cd08549 G1PDH_related Glycerol 41.8 43 0.00094 34.7 5.2 49 221-275 69-117 (332)
167 cd08191 HHD 6-hydroxyhexanoate 41.4 51 0.0011 34.9 5.8 51 221-271 67-130 (386)
168 COG4981 Enoyl reductase domain 39.9 1.8E+02 0.0039 32.9 9.6 95 224-341 112-219 (717)
169 cd08190 HOT Hydroxyacid-oxoaci 39.7 53 0.0011 35.2 5.6 52 220-271 67-137 (414)
170 cd08174 G1PDH-like Glycerol-1- 39.7 63 0.0014 33.3 6.0 55 220-279 61-116 (331)
171 PRK13293 F420-0--gamma-glutamy 39.7 80 0.0017 31.9 6.4 92 308-409 90-199 (245)
172 COG0371 GldA Glycerol dehydrog 39.6 40 0.00088 35.8 4.6 57 219-280 70-126 (360)
173 PRK15395 methyl-galactoside AB 39.2 4.3E+02 0.0092 26.8 17.0 91 142-269 22-113 (330)
174 PF10126 Nit_Regul_Hom: Unchar 38.8 1E+02 0.0022 27.4 6.2 75 184-270 26-102 (110)
175 cd06297 PBP1_LacI_like_12 Liga 38.8 3.6E+02 0.0079 25.9 14.0 41 222-268 43-84 (269)
176 KOG4180 Predicted kinase [Gene 38.6 29 0.00062 36.6 3.1 68 195-268 45-135 (395)
177 PRK02261 methylaspartate mutas 38.5 1.9E+02 0.0042 26.2 8.3 123 144-299 3-133 (137)
178 cd08175 G1PDH Glycerol-1-phosp 38.2 43 0.00094 34.8 4.5 47 221-273 69-115 (348)
179 cd06315 PBP1_ABC_sugar_binding 38.1 2.5E+02 0.0054 27.3 9.8 66 146-244 2-67 (280)
180 PRK15052 D-tagatose-1,6-bispho 38.1 5.7E+02 0.012 27.9 13.6 139 146-313 13-168 (421)
181 cd06167 LabA_like LabA_like pr 37.6 52 0.0011 29.3 4.4 43 224-269 90-132 (149)
182 PF00289 CPSase_L_chain: Carba 37.0 54 0.0012 28.7 4.3 102 146-268 4-105 (110)
183 cd06307 PBP1_uncharacterized_s 37.0 3.9E+02 0.0083 25.6 12.7 41 223-268 49-89 (275)
184 cd01575 PBP1_GntR Ligand-bindi 37.0 3.7E+02 0.0079 25.4 21.6 83 147-268 2-84 (268)
185 cd06295 PBP1_CelR Ligand bindi 36.8 3.6E+02 0.0079 25.8 10.6 42 223-270 54-95 (275)
186 PRK06203 aroB 3-dehydroquinate 36.7 63 0.0014 34.5 5.6 64 222-291 97-163 (389)
187 cd08169 DHQ-like Dehydroquinat 36.7 49 0.0011 34.6 4.7 64 221-290 68-134 (344)
188 cd06289 PBP1_MalI_like Ligand- 35.4 3.9E+02 0.0084 25.2 13.4 42 222-268 44-85 (268)
189 TIGR00640 acid_CoA_mut_C methy 35.2 2.5E+02 0.0055 25.3 8.5 118 144-298 2-125 (132)
190 cd06278 PBP1_LacI_like_2 Ligan 35.1 3.9E+02 0.0084 25.2 19.1 42 221-268 42-83 (266)
191 cd01744 GATase1_CPSase Small c 35.1 85 0.0018 29.3 5.6 49 229-292 35-86 (178)
192 cd02071 MM_CoA_mut_B12_BD meth 35.0 1.8E+02 0.0039 25.4 7.4 45 201-245 42-91 (122)
193 cd01539 PBP1_GGBP Periplasmic 34.9 4.6E+02 0.01 25.9 18.8 43 222-268 46-88 (303)
194 PF00710 Asparaginase: Asparag 34.9 2.4E+02 0.0052 29.1 9.3 61 219-280 56-118 (313)
195 cd01743 GATase1_Anthranilate_S 34.4 58 0.0013 30.4 4.4 48 231-291 40-87 (184)
196 PF04405 ScdA_N: Domain of Unk 34.4 38 0.00082 26.4 2.6 27 222-250 12-38 (56)
197 PF01936 NYN: NYN domain; Int 34.3 46 0.00099 29.2 3.5 46 225-273 87-132 (146)
198 TIGR01861 ANFD nitrogenase iro 34.2 1.4E+02 0.0031 33.2 8.0 105 146-252 131-247 (513)
199 TIGR03822 AblA_like_2 lysine-2 34.2 5.4E+02 0.012 26.6 16.1 160 149-319 140-310 (321)
200 cd00537 MTHFR Methylenetetrahy 34.0 63 0.0014 32.4 4.8 88 178-269 30-137 (274)
201 cd06294 PBP1_ycjW_transcriptio 33.9 4.1E+02 0.009 25.1 13.8 40 223-268 50-89 (270)
202 cd04234 AAK_AK AAK_AK: Amino A 33.8 3.1E+02 0.0067 26.7 9.5 37 206-245 4-42 (227)
203 PRK06774 para-aminobenzoate sy 33.7 48 0.001 31.4 3.7 50 227-289 37-86 (191)
204 PRK08007 para-aminobenzoate sy 33.3 56 0.0012 31.0 4.1 51 227-290 37-87 (187)
205 TIGR00696 wecB_tagA_cpsF bacte 33.1 1.6E+02 0.0035 28.0 7.1 85 145-242 49-134 (177)
206 cd06335 PBP1_ABC_ligand_bindin 32.8 3.1E+02 0.0067 27.8 9.7 62 203-267 160-224 (347)
207 TIGR03134 malonate_gamma malon 32.7 1.6E+02 0.0035 29.5 7.3 130 194-354 15-151 (238)
208 PF00731 AIRC: AIR carboxylase 32.6 42 0.0009 31.4 3.0 50 215-270 37-86 (150)
209 KOG0066 eIF2-interacting prote 32.5 1.5E+02 0.0033 32.9 7.4 89 283-374 664-761 (807)
210 cd06312 PBP1_ABC_sugar_binding 32.2 4.6E+02 0.01 25.1 10.5 86 146-268 1-88 (271)
211 PRK15404 leucine ABC transport 32.1 2.9E+02 0.0064 28.6 9.6 97 164-268 149-248 (369)
212 smart00481 POLIIIAc DNA polyme 32.1 1.6E+02 0.0035 22.6 5.9 51 220-272 15-65 (67)
213 COG1122 CbiO ABC-type cobalt t 31.0 1.5E+02 0.0033 29.4 6.9 99 270-371 95-196 (235)
214 COG2086 FixA Electron transfer 30.6 5.9E+02 0.013 26.0 11.0 114 269-408 21-137 (260)
215 PF00117 GATase: Glutamine ami 30.3 73 0.0016 29.6 4.3 49 230-293 39-90 (192)
216 cd06268 PBP1_ABC_transporter_L 30.2 4.3E+02 0.0092 24.9 9.7 61 205-268 159-222 (298)
217 TIGR00262 trpA tryptophan synt 30.2 85 0.0018 31.6 5.0 49 221-271 103-151 (256)
218 PLN02204 diacylglycerol kinase 30.1 66 0.0014 36.5 4.5 70 177-250 160-235 (601)
219 cd06329 PBP1_SBP_like_3 Peripl 29.8 3.5E+02 0.0077 27.3 9.6 64 202-268 164-233 (342)
220 PRK01045 ispH 4-hydroxy-3-meth 29.6 1.5E+02 0.0033 30.7 6.8 78 221-300 199-280 (298)
221 cd06347 PBP1_ABC_ligand_bindin 29.5 2.8E+02 0.0061 27.4 8.7 61 205-268 160-223 (334)
222 cd06313 PBP1_ABC_sugar_binding 29.5 5.3E+02 0.011 24.9 16.3 125 222-363 44-181 (272)
223 cd06342 PBP1_ABC_LIVBP_like Ty 29.5 3.3E+02 0.0072 26.9 9.1 102 157-267 116-221 (334)
224 PRK06843 inosine 5-monophospha 29.0 7.3E+02 0.016 26.9 12.0 102 220-340 179-285 (404)
225 cd00381 IMPDH IMPDH: The catal 28.8 6.8E+02 0.015 26.0 11.5 104 221-339 121-225 (325)
226 TIGR00215 lpxB lipid-A-disacch 28.8 1.4E+02 0.003 31.5 6.5 90 146-244 7-100 (385)
227 PF02401 LYTB: LytB protein; 28.7 1.5E+02 0.0032 30.5 6.4 77 221-299 198-278 (281)
228 PLN02821 1-hydroxy-2-methyl-2- 28.3 1.5E+02 0.0032 32.7 6.6 52 221-273 350-401 (460)
229 PF07355 GRDB: Glycine/sarcosi 28.2 74 0.0016 33.8 4.2 96 143-240 226-347 (349)
230 PRK07765 para-aminobenzoate sy 28.2 96 0.0021 30.2 4.8 46 232-292 45-93 (214)
231 PRK04155 chaperone protein Hch 28.1 6.7E+02 0.015 25.7 11.2 40 221-260 133-180 (287)
232 cd06326 PBP1_STKc_like Type I 28.0 4.3E+02 0.0094 26.1 9.7 103 156-268 117-223 (336)
233 cd02991 UAS_ETEA UAS family, E 27.8 1.5E+02 0.0033 26.0 5.6 66 223-294 43-108 (116)
234 TIGR03100 hydr1_PEP hydrolase, 27.7 6E+02 0.013 25.0 10.6 82 235-328 28-118 (274)
235 PRK05261 putative phosphoketol 27.7 7.6E+02 0.016 29.2 12.5 49 141-190 40-90 (785)
236 PRK04011 peptide chain release 27.6 2.9E+02 0.0063 29.9 8.7 23 321-343 300-322 (411)
237 PTZ00063 histone deacetylase; 27.5 2.8E+02 0.006 30.4 8.6 97 161-281 236-332 (436)
238 PRK06895 putative anthranilate 27.5 1.1E+02 0.0024 28.8 5.1 46 233-291 43-88 (190)
239 PRK13805 bifunctional acetalde 27.4 1.1E+02 0.0024 36.1 5.9 33 221-253 527-559 (862)
240 PRK14021 bifunctional shikimat 27.4 56 0.0012 36.4 3.4 64 221-290 254-320 (542)
241 PRK12446 undecaprenyldiphospho 27.2 4.4E+02 0.0096 27.4 9.9 95 236-332 4-114 (352)
242 cd01977 Nitrogenase_VFe_alpha 26.8 8E+02 0.017 26.2 12.1 152 222-413 76-233 (415)
243 cd06298 PBP1_CcpA_like Ligand- 26.8 5.5E+02 0.012 24.2 15.6 77 222-314 44-123 (268)
244 cd06346 PBP1_ABC_ligand_bindin 26.6 4.5E+02 0.0099 26.1 9.6 62 203-267 159-223 (312)
245 TIGR00676 fadh2 5,10-methylene 26.5 1E+02 0.0023 31.0 4.9 56 215-270 66-135 (272)
246 cd06300 PBP1_ABC_sugar_binding 26.2 5.7E+02 0.012 24.3 15.1 93 146-271 1-94 (272)
247 PF09651 Cas_APE2256: CRISPR-a 26.2 2E+02 0.0043 26.1 6.2 97 236-342 24-126 (136)
248 PRK05660 HemN family oxidoredu 26.0 65 0.0014 34.1 3.4 65 232-296 57-136 (378)
249 cd06291 PBP1_Qymf_like Ligand 25.9 5.7E+02 0.012 24.2 10.4 66 147-245 2-67 (265)
250 TIGR02634 xylF D-xylose ABC tr 25.8 6.6E+02 0.014 24.9 14.2 43 222-268 43-85 (302)
251 cd06354 PBP1_BmpA_PnrA_like Pe 25.7 6.2E+02 0.013 24.5 10.2 63 146-242 1-66 (265)
252 KOG1116 Sphingosine kinase, in 25.2 39 0.00084 38.0 1.6 106 221-331 224-334 (579)
253 PF13458 Peripla_BP_6: Peripla 25.1 5.1E+02 0.011 25.6 9.6 100 156-263 115-217 (343)
254 TIGR02826 RNR_activ_nrdG3 anae 25.1 1.7E+02 0.0038 26.9 5.7 43 221-264 47-92 (147)
255 PRK03359 putative electron tra 25.1 2.2E+02 0.0048 28.8 6.9 52 224-276 71-127 (256)
256 cd03411 Ferrochelatase_N Ferro 25.0 4.4E+02 0.0095 24.2 8.4 136 146-297 2-142 (159)
257 TIGR01378 thi_PPkinase thiamin 24.9 5.5E+02 0.012 24.7 9.4 67 178-245 20-98 (203)
258 COG0414 PanC Panthothenate syn 24.8 1E+02 0.0022 31.7 4.4 35 303-338 17-52 (285)
259 PRK13111 trpA tryptophan synth 24.6 2E+02 0.0043 29.1 6.5 49 221-271 105-153 (258)
260 PRK05096 guanosine 5'-monophos 24.5 3.9E+02 0.0084 28.5 8.7 104 221-340 137-242 (346)
261 TIGR00732 dprA DNA protecting 24.5 6.8E+02 0.015 24.5 10.4 106 150-274 77-193 (220)
262 PRK08857 para-aminobenzoate sy 24.1 1.4E+02 0.0031 28.2 5.1 49 229-290 39-87 (193)
263 TIGR00888 guaA_Nterm GMP synth 24.1 73 0.0016 29.9 3.1 48 229-291 37-86 (188)
264 cd06334 PBP1_ABC_ligand_bindin 24.0 7.9E+02 0.017 25.2 11.1 103 157-267 117-226 (351)
265 PRK13210 putative L-xylulose 5 24.0 5.1E+02 0.011 25.4 9.3 48 221-268 17-73 (284)
266 TIGR01501 MthylAspMutase methy 23.9 5.2E+02 0.011 23.6 8.5 86 146-246 3-94 (134)
267 CHL00200 trpA tryptophan synth 23.8 7.7E+02 0.017 24.9 10.7 128 222-370 4-150 (263)
268 COG1168 MalY Bifunctional PLP- 23.8 5.6E+02 0.012 27.7 9.7 194 148-375 85-320 (388)
269 cd01972 Nitrogenase_VnfE_like 23.8 9.1E+02 0.02 25.8 12.7 153 223-413 79-237 (426)
270 PF13727 CoA_binding_3: CoA-bi 23.7 1.3E+02 0.0028 26.9 4.5 47 221-269 129-175 (175)
271 TIGR01302 IMP_dehydrog inosine 23.6 5.1E+02 0.011 28.2 9.8 100 222-340 252-356 (450)
272 TIGR01284 alt_nitrog_alph nitr 23.5 2.6E+02 0.0056 30.5 7.6 104 146-251 128-243 (457)
273 PF02844 GARS_N: Phosphoribosy 23.5 77 0.0017 27.6 2.8 90 145-268 1-92 (100)
274 PRK12767 carbamoyl phosphate s 23.5 6.4E+02 0.014 25.3 10.0 40 221-261 57-96 (326)
275 cd04509 PBP1_ABC_transporter_G 23.3 6.2E+02 0.013 23.8 9.5 62 204-268 159-225 (299)
276 cd06337 PBP1_ABC_ligand_bindin 23.3 2.1E+02 0.0045 29.3 6.6 62 204-268 171-235 (357)
277 TIGR01303 IMP_DH_rel_1 IMP deh 23.3 7.6E+02 0.016 27.3 11.1 103 221-340 252-357 (475)
278 TIGR01769 GGGP geranylgeranylg 23.2 2.5E+02 0.0055 27.4 6.7 59 220-280 11-71 (205)
279 cd06305 PBP1_methylthioribose_ 23.2 6.5E+02 0.014 23.9 19.8 126 146-314 1-127 (273)
280 PRK13294 F420-0--gamma-glutamy 23.1 2.9E+02 0.0062 30.3 7.7 93 307-409 89-199 (448)
281 PRK07649 para-aminobenzoate/an 22.6 95 0.0021 29.7 3.6 64 210-290 23-87 (195)
282 cd06310 PBP1_ABC_sugar_binding 22.6 6.7E+02 0.015 23.8 14.9 44 221-268 45-88 (273)
283 cd06275 PBP1_PurR Ligand-bindi 22.6 6.6E+02 0.014 23.7 11.3 66 147-245 2-67 (269)
284 COG0796 MurI Glutamate racemas 22.5 1.3E+02 0.0028 30.9 4.6 42 222-268 56-97 (269)
285 KOG2387 CTP synthase (UTP-ammo 22.3 1.6E+02 0.0035 32.4 5.5 58 233-306 363-422 (585)
286 TIGR00677 fadh2_euk methylenet 22.1 1.5E+02 0.0033 30.2 5.1 55 215-269 67-138 (281)
287 PLN00197 beta-amylase; Provisi 22.0 6.2E+02 0.013 28.7 9.9 96 222-317 129-274 (573)
288 PRK11366 puuD gamma-glutamyl-g 21.8 2.5E+02 0.0054 28.1 6.6 45 197-243 27-71 (254)
289 TIGR01284 alt_nitrog_alph nitr 21.8 1.1E+03 0.023 25.8 12.4 151 223-414 114-271 (457)
290 PF13685 Fe-ADH_2: Iron-contai 21.5 72 0.0016 32.1 2.6 51 221-276 63-113 (250)
291 TIGR00238 KamA family protein. 21.5 9.3E+02 0.02 25.0 11.5 157 148-317 162-331 (331)
292 PRK10247 putative ABC transpor 21.4 1.7E+02 0.0037 28.1 5.2 59 314-373 137-197 (225)
293 PRK09435 membrane ATPase/prote 21.3 8.8E+02 0.019 25.5 10.7 31 308-343 149-179 (332)
294 PF04122 CW_binding_2: Putativ 21.2 1.1E+02 0.0025 25.2 3.4 26 223-248 62-87 (92)
295 KOG4435 Predicted lipid kinase 20.9 1.4E+02 0.0031 32.5 4.7 49 222-273 106-154 (535)
296 PLN02591 tryptophan synthase 20.9 2.6E+02 0.0055 28.2 6.4 47 221-270 94-141 (250)
297 PF01994 Trm56: tRNA ribose 2' 20.8 1.1E+02 0.0024 27.6 3.3 58 197-254 11-69 (120)
298 TIGR00216 ispH_lytB (E)-4-hydr 20.7 3.4E+02 0.0073 28.0 7.3 52 220-273 196-247 (280)
299 PLN02591 tryptophan synthase 20.7 6.8E+02 0.015 25.2 9.3 125 237-375 6-143 (250)
300 PRK15447 putative protease; Pr 20.7 1.6E+02 0.0034 30.3 4.9 24 323-346 18-41 (301)
301 TIGR03652 FeS_repair_RIC iron- 20.6 72 0.0016 31.1 2.4 27 223-251 9-35 (216)
302 PRK14987 gluconate operon tran 20.6 8.4E+02 0.018 24.2 20.7 85 145-268 64-148 (331)
303 PRK10771 thiQ thiamine transpo 20.5 1.8E+02 0.0039 27.9 5.1 59 314-373 129-189 (232)
304 PRK12360 4-hydroxy-3-methylbut 20.4 2.7E+02 0.0059 28.6 6.5 53 221-275 198-250 (281)
305 cd01829 SGNH_hydrolase_peri2 S 20.3 6.7E+02 0.014 22.9 9.7 25 222-246 48-73 (200)
306 TIGR01283 nifE nitrogenase mol 20.2 5.9E+02 0.013 27.6 9.5 38 212-249 202-239 (456)
307 COG1303 Uncharacterized protei 20.2 4.9E+02 0.011 24.9 7.5 90 148-255 34-124 (179)
308 PRK11780 isoprenoid biosynthes 20.0 1.2E+02 0.0026 29.7 3.8 34 229-262 81-130 (217)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=5.4e-114 Score=910.32 Aligned_cols=424 Identities=81% Similarity=1.320 Sum_probs=402.4
Q ss_pred cCCCcceeccccccccccCCCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCCCccc
Q 011540 49 SRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH 128 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~r~~~ 128 (483)
.+++|+++|+ .+|++|+||||.+|+|+.|++++|+..|+.++.....||++++.|+..+..++...++..
T Consensus 2 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~ 71 (484)
T PLN02564 2 SSKPKIVTGD----------AGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTH 71 (484)
T ss_pred CCcCccccCC----------CceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCcc
Confidence 4678999999 999999999999999999999999999999999899999999999998866666678899
Q ss_pred ccccCCccccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhcc
Q 011540 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208 (483)
Q Consensus 129 f~~~g~r~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~ 208 (483)
|++||||+++||+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++
T Consensus 72 ~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~ 151 (484)
T PLN02564 72 FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR 151 (484)
T ss_pred ceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhC
Confidence 99999999999999999999999999999999999999999887788889999999999999999999999999999999
Q ss_pred CcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540 209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (483)
Q Consensus 209 GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA 288 (483)
|||+|||||+++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||
T Consensus 152 GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTA 231 (484)
T PLN02564 152 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 231 (484)
T ss_pred CCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEE
Q 011540 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI 368 (483)
Q Consensus 289 ~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vI 368 (483)
+++++++|+++++||.|+++||||||+|||+|||||+++|||+++||+|||||.||+++++.+++++|++|+++++|+||
T Consensus 232 v~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VI 311 (484)
T PLN02564 232 VEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVI 311 (484)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEE
Confidence 99999999999999999988999999999999999999999996799999999999999888999999999999999999
Q ss_pred EEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHH
Q 011540 369 VVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLA 448 (483)
Q Consensus 369 VvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG 448 (483)
|||||+++.++.+..+....+|++||++|.+++.||+++|+++++++.++.+++||++|||+|||++|+++|++||++||
T Consensus 312 VVAEGagq~~~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG 391 (484)
T PLN02564 312 VVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLA 391 (484)
T ss_pred EEeCCCccchhhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHH
Confidence 99999988777655433456899999999999999999999998544455689999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceEEEEECCEEEEeehhhhhhc
Q 011540 449 HSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 449 ~~AV~~~~~G~tg~mvgi~~~~~~~iPi~~v~~~ 482 (483)
+.|||++|+|+||+||+++|++++++||+++++.
T Consensus 392 ~~AV~~~~aG~tg~mVg~~~~~~~~vPi~~~~~~ 425 (484)
T PLN02564 392 HSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITEK 425 (484)
T ss_pred HHHHHHHHcCCCCEEEEEECCEEEEEEHHHHhcc
Confidence 9999999999999999999999999999999863
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=9.4e-105 Score=836.69 Aligned_cols=390 Identities=53% Similarity=0.879 Sum_probs=365.0
Q ss_pred CCCCCCCCCCCcccccccccccccChHHHHHHHhccC------CCCcccccccCCccccccCCCCeeEEEEccCCCCcch
Q 011540 86 LPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGI 159 (483)
Q Consensus 86 ~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~------~~r~~~f~~~g~r~~~~~~~~~~~iaIvtsGG~apGm 159 (483)
-+++++||..+..++... +||++++.|...+..++. ..+...|++||||+++||+|+++||||||||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 467788999888888777 899999999887654332 1355789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccccccc---CCeeccChhHHhchhccCcccccccCCCccHHHHHHHHHHcCCcE
Q 011540 160 NTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQ 236 (483)
Q Consensus 160 NavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~ 236 (483)
|++||++|+.+.+.|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||+++++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999877888899999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEec
Q 011540 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLM 316 (483)
Q Consensus 237 LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvM 316 (483)
||+|||||||++|.+|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEEEEeCCCCchhhhccCCccccccccCCcc
Q 011540 317 GRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRL 396 (483)
Q Consensus 317 GR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~ 396 (483)
||+|||||+++|||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+... ..++|+|||++
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~~ 331 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNPK 331 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCcc
Confidence 99999999999999867999999999999999999999999999999999999999998766532 23689999999
Q ss_pred chhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCEEEEeeh
Q 011540 397 LLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPI 476 (483)
Q Consensus 397 l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPi 476 (483)
|.+++.+|+++|+++++. .++.+++||++|||+|||++||++|++||++||+.|||++|+|+||+||++++++++++||
T Consensus 332 l~~ig~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl 410 (443)
T PRK06830 332 LGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPI 410 (443)
T ss_pred cccHHHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeH
Confidence 999999999999999863 2345789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 011540 477 AVSSA 481 (483)
Q Consensus 477 ~~v~~ 481 (483)
+++++
T Consensus 411 ~~v~~ 415 (443)
T PRK06830 411 DLAVS 415 (443)
T ss_pred HHHhc
Confidence 99885
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=1.9e-103 Score=830.66 Aligned_cols=370 Identities=53% Similarity=0.871 Sum_probs=348.6
Q ss_pred ccccccChHHHHHHHhccC--CCCcccccccCCccccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEE
Q 011540 104 QTFVSPEDAVAQNIVIQKD--SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILG 181 (483)
Q Consensus 104 ~~~V~~t~~V~~~~~~~~~--~~r~~~f~~~g~r~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~G 181 (483)
..||++++.|+..+..++. ..+...|++||||+++||+|+++|||||||||||||||++||++|+.+.+.|++.+|||
T Consensus 45 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~G 124 (459)
T PTZ00286 45 EAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYG 124 (459)
T ss_pred cceecCCCeEEeecccCccccccccchheecCCceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4899999999988765542 23567999999999999999999999999999999999999999999987788899999
Q ss_pred EcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCC
Q 011540 182 IEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL 261 (483)
Q Consensus 182 i~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~ 261 (483)
|++||+||+++++++|+|+.|++|+++|||+|||||+++++++|+++|++++||+||+|||||||++|.+|+++++++++
T Consensus 125 i~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~ 204 (459)
T PTZ00286 125 AKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKL 204 (459)
T ss_pred EecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCC
Q 011540 262 QVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPE 341 (483)
Q Consensus 262 ~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE 341 (483)
+|+||||||||||||++||+|||||||+++++++|+++++||.|++|||||||+|||+|||||+++|||+++||+|||||
T Consensus 205 ~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE 284 (459)
T PTZ00286 205 NISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPE 284 (459)
T ss_pred CceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999995599999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhcCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEE
Q 011540 342 SPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMIN 421 (483)
Q Consensus 342 ~~f~l~~~~~lle~I~~rl~~~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~ 421 (483)
.||+++ +++++|++|+++++|+|||||||+++.+....+ ...+|++||++|+|++.+|+++|+++|+.+ +..++
T Consensus 285 ~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~--~~~~D~~Gn~~l~dig~~L~~~I~~~~~~~-~~~~~ 358 (459)
T PTZ00286 285 FDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL--DLGTDASGNKKLWDIGVYLKDEITKYLKKK-KPEHT 358 (459)
T ss_pred CCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccc--cccccccCCcccccHHHHHHHHHHHHHhhc-cCceE
Confidence 999987 899999999999999999999999987765443 235899999999999999999999998643 35689
Q ss_pred eeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCEEEEeehhhh
Q 011540 422 MKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVS 479 (483)
Q Consensus 422 ~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPi~~v 479 (483)
+||++|||+|||++||++|+.||++||+.|||++|+|+||+||++++++++++||+++
T Consensus 359 ~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v 416 (459)
T PTZ00286 359 VKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEM 416 (459)
T ss_pred EEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999985
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=2.9e-96 Score=767.48 Aligned_cols=349 Identities=56% Similarity=0.953 Sum_probs=325.6
Q ss_pred ccccccCCccccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC--eeccChhHHhc
Q 011540 127 VHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN--TLTLSPKVVND 204 (483)
Q Consensus 127 ~~f~~~g~r~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~--~~~L~~~~v~~ 204 (483)
..|+|||||+++||+|+++|||||||||||||||+|||++|+.+. .++..+||||++||+||++++ .++|+|++|++
T Consensus 36 ~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~-~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~ 114 (411)
T PLN02884 36 QWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQN 114 (411)
T ss_pred hhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHH
Confidence 578999999999999999999999999999999999999999875 467668999999999999998 67789999999
Q ss_pred hhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCC
Q 011540 205 IHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (483)
Q Consensus 205 i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~G 284 (483)
|+++|||+|||||++.++++++++|++++||+||+|||||||++|++|+++++++|++++||||||||||||++||+|||
T Consensus 115 i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiG 194 (411)
T PLN02884 115 IHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFG 194 (411)
T ss_pred HHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcC
Q 011540 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (483)
Q Consensus 285 fdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~ 364 (483)
||||+++++++|++++.+|.|+++||||||+|||+|||||+++|||++.||+|||||.||+++++++++++|+++++.++
T Consensus 195 FdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~ 274 (411)
T PLN02884 195 FDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKG 274 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999998866789999999999999999999999339999999999999888899999999999889
Q ss_pred CeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHH
Q 011540 365 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYC 444 (483)
Q Consensus 365 ~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a 444 (483)
|++||||||+++.+.... ..+|++||++|++++.+|+++|+++++. .+..+++|+++|||+|||++|+++|+.+|
T Consensus 275 ~~iIVVAEG~g~~~~~~~----~~~Da~G~~~l~~~~~~La~~i~~~~~~-~g~~~~~r~~~lGy~qRgg~p~a~Dr~la 349 (411)
T PLN02884 275 SAVVCVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIKKHFKD-IGVPADVKYIDPTYMIRACRANASDAILC 349 (411)
T ss_pred cEEEEEeccccccccccc----ccccccCCcccCcHHHHHHHHHHHHhhc-cCCCceEEEccCCccccCCCCCHHHHHHH
Confidence 999999999976554321 2589999999999999999999998742 22235799999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEECCEEEEeehhhhhh
Q 011540 445 TLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 445 ~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
++||+.||+++++|+||+||++++++++++||++++.
T Consensus 350 ~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~ 386 (411)
T PLN02884 350 TVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIA 386 (411)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhc
Confidence 9999999999999999999999999999999999974
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=4.1e-85 Score=679.20 Aligned_cols=328 Identities=25% Similarity=0.407 Sum_probs=294.5
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChh--H-HhchhccCcccccccCCCc-
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK--V-VNDIHKRGGTILRTSRGGH- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~--~-v~~i~~~GGs~LGTsR~~~- 220 (483)
+||||+||||||||||++||++++.+...+++.+||||++||+||+++++++|++. . ++.|+++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999987654456799999999999999999999985 3 4559999999999999743
Q ss_pred ----------------cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCC
Q 011540 221 ----------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (483)
Q Consensus 221 ----------------d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~G 284 (483)
++++++++|++++||+||+||||||+++|++|++++.++++.|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 3689999999999999999999999999999999999888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhc-------------------CCCcEEecCCCCCC
Q 011540 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS-------------------RDVDCCLIPESPFY 345 (483)
Q Consensus 285 fdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~-------------------~~ad~vlIPE~~f~ 345 (483)
||||+++++++|+++++||.|+++.++|||||||+|||||+++|||. .+||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 99999999999999999999998666666999999999999999992 38999999999999
Q ss_pred CCChhhHHHHHHHHHHhcCCeEEEEeCCCCchhhhccCCc---cccccccCCccchh--HHHHHHHHHHhhccCceeEEE
Q 011540 346 LEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPA---VDEKDASGNRLLLD--IGLWLTQKIKDHFTKVQKMMI 420 (483)
Q Consensus 346 l~~~~~lle~I~~rl~~~~~~vIVvaEGa~~~~~~~~~~~---~~~~D~~Gn~~l~~--ig~~La~~I~e~~~~~~~~~~ 420 (483)
++ ++++.|++++++++|++||||||+.+.+..+.+.. ...+|++||++|.+ ++.+|+++|+++++.+
T Consensus 244 ~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e----- 315 (403)
T PRK06555 244 LE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE----- 315 (403)
T ss_pred HH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----
Confidence 87 79999999998899999999999976544333211 12489999999986 6899999999988732
Q ss_pred EeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEE---ECCEEEEeehhhhhh
Q 011540 421 NMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGP---VNSRHAYIPIAVSSA 481 (483)
Q Consensus 421 ~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi---~~~~~~~iPi~~v~~ 481 (483)
.+|+++|||+|||++|+++|+.+|++||..||+++++|.|| ||++ +|++++++||+++..
T Consensus 316 ~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~ 378 (403)
T PRK06555 316 KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG 378 (403)
T ss_pred ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc
Confidence 26688999999999999999999999999999999999999 6787 799999999999873
No 6
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=4e-85 Score=667.36 Aligned_cols=316 Identities=36% Similarity=0.542 Sum_probs=290.6
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeecc-ChhHHhchhccCcccccccCCCc----
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTL-SPKVVNDIHKRGGTILRTSRGGH---- 220 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L-~~~~v~~i~~~GGs~LGTsR~~~---- 220 (483)
|||||||||||||||++||++++++.+.++ .+||||++||+||+++++++| +|++++.|.++|||+|||||+.+
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g-~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCC-ceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 699999999999999999999998864444 599999999999999999999 99999999999999999999842
Q ss_pred --cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHH
Q 011540 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (483)
Q Consensus 221 --d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~ 298 (483)
++++++++|++++||+|++||||||+++|++|++. + ++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~----g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK----G--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc----C--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999862 4 889999999999999999999999999999999999
Q ss_pred HHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCch
Q 011540 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQE 377 (483)
Q Consensus 299 i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~ 377 (483)
++++|.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++|+++ +++++||||||+...
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~ 228 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPK 228 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcccc
Confidence 99999997 579999999999999999999999 899999999999976 799999999988 789999999999654
Q ss_pred hhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 011540 378 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 457 (483)
Q Consensus 378 ~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~ 457 (483)
+..... ....+|++||+++++++++|+++|+++++ ++.|...|||+|||+.|+++||.+|++||..||+++++
T Consensus 229 ~~~~~~-~~~~~d~~gh~~~~~~~~~l~~~i~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~ 301 (324)
T TIGR02483 229 GGEMVV-QEGVKDAFGHVRLGGIGNWLAEEIERRTG------IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHE 301 (324)
T ss_pred ccchhc-cccccccccCcccCcHHHHHHHHHHHhcC------CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 432221 22358999999999999999999999876 35778899999999999999999999999999999999
Q ss_pred CCCceEEEEECCEEEEeehhhhh
Q 011540 458 GFTGFTVGPVNSRHAYIPIAVSS 480 (483)
Q Consensus 458 G~tg~mvgi~~~~~~~iPi~~v~ 480 (483)
|+||+||++++++++++||++++
T Consensus 302 g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 302 GQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999874
No 7
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.6e-84 Score=679.44 Aligned_cols=325 Identities=23% Similarity=0.338 Sum_probs=294.1
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhc---hhccCcccccccCCCc
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND---IHKRGGTILRTSRGGH 220 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~---i~~~GGs~LGTsR~~~ 220 (483)
.+||||+||||||||||++||++++.+.+..+..+||||++||+||+++++++|+..+++. |.++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999987544447999999999999999999999877777 8999999999999853
Q ss_pred --------cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHH
Q 011540 221 --------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (483)
Q Consensus 221 --------d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~ 292 (483)
++++++++|++++||+||+|||||||++|++|+++++++|.+++||||||||||||++||+|||||||++++
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 479999999999999999999999999999999999989989999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCC--ceEEEEecCCCcchHHHHHhhh-----cCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCC
Q 011540 293 QRAINAAHVEVESVEN--GVGIVKLMGRYSGFISMYATLA-----SRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (483)
Q Consensus 293 ~~~i~~i~~~A~S~~~--rv~iVEvMGR~~G~LA~~aaLA-----~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~ 365 (483)
+++|+++..|+.++.+ ||||||+|||+|||||+++||| + +||+|||||.||+++ .+++.|++++++++|
T Consensus 163 ~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~~~ 238 (416)
T PRK14072 163 ATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRYGY 238 (416)
T ss_pred HHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhCCC
Confidence 9999999554443321 7999999999999999999999 7 899999999999987 899999999888899
Q ss_pred eEEEEeCCCCc---hhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCC--CChhh
Q 011540 366 MVIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP--SNGSD 440 (483)
Q Consensus 366 ~vIVvaEGa~~---~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~--p~a~D 440 (483)
++||||||+.. .++.+. ...+|++||+++++++++|+++|+++++ +++|+..|||+|||+. |+++|
T Consensus 239 ~ivvVaEG~~~~~g~~i~e~---~~~~D~~gh~~l~g~~~~La~~i~~~~g------~~~R~~~LG~~QRgg~~~ps~~D 309 (416)
T PRK14072 239 CVVVVSEGIRDADGKFIAEA---GLAEDAFGHAQLGGVAPVLANLIKEKLG------KKVHWAVLDYLQRAARHIASKTD 309 (416)
T ss_pred eEEEEecCcccccccchhcc---ccccCCCCCcccccHHHHHHHHHHHHhC------CeEEEEeCChhhhCCCCCCCHHH
Confidence 99999999853 222111 1236999999999999999999999886 4578899999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhhh
Q 011540 441 NIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSSA 481 (483)
Q Consensus 441 ~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~~ 481 (483)
|+||++||..||+++++|.||+||+++++ ++..+||++++.
T Consensus 310 r~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~ 357 (416)
T PRK14072 310 VEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVAN 357 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHh
Confidence 99999999999999999999999999999 999999999875
No 8
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4.4e-84 Score=667.98 Aligned_cols=317 Identities=31% Similarity=0.449 Sum_probs=289.6
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CeeccChhHHhchhccCcccccccCC-C-
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRG-G- 219 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGs~LGTsR~-~- 219 (483)
.+||||+||||||||||++||++++++.+.++ .+||||++||+||+++ ++++|+|++|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 46999999999999999999999998875445 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540 220 -----------HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (483)
Q Consensus 220 -----------~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA 288 (483)
+++++++++|++++||+||+||||||+++|++|++. ..|+||||||||||||++||+|||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 246899999999999999999999999999999863 2588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeE
Q 011540 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMV 367 (483)
Q Consensus 289 ~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~v 367 (483)
+++++++||+++++|.|| +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ +++++
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 999999999999999997 689999999999999999999999 899999999999987 799999999987 68999
Q ss_pred EEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHH
Q 011540 368 IVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLL 447 (483)
Q Consensus 368 IVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~L 447 (483)
||||||+.... .+. ...+|++||+++++++++|+++|+++++. +.|+..|||+|||+.|+++||.+|++|
T Consensus 233 ivvsEG~~~~~-g~~---~~~~d~~g~~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~l 302 (360)
T PRK14071 233 VVVSEAVRTEE-GEQ---VTKTQALGEDRYGGIGQYLAEQIAERTGA------ETRVTVLGHIQRGGIPSPRDRLLASAF 302 (360)
T ss_pred EEEcCCCcccc-ccc---ccccccccccccCcHHHHHHHHHHHhcCC------CeeEEecChhhcCCCCChHHHHHHHHH
Confidence 99999986421 111 12379999999999999999999998763 456778999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEECCEEEEeehhhhhh
Q 011540 448 AHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 448 G~~AV~~~~~G~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
|..||+++++|+||+||+++++++.++||++++.
T Consensus 303 G~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~ 336 (360)
T PRK14071 303 GVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIA 336 (360)
T ss_pred HHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhc
Confidence 9999999999999999999999999999999975
No 9
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5.2e-84 Score=716.47 Aligned_cols=384 Identities=22% Similarity=0.249 Sum_probs=343.0
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC----------
Q 011540 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG---------- 133 (483)
Q Consensus 69 ~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g---------- 133 (483)
..++.+||.+|++.++++|.+++.+++|+....|++++++.|+.|..++. +++| +|+.+|.+..
T Consensus 299 ~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~~r~~~f~~~~~~~~~~~~~~ 377 (745)
T TIGR02478 299 TRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIK-EKRFAEAMRLRGREFVENLATFLFLSIPD 377 (745)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHH-hccHHHHHHhcCHHHHHHHHHHHhhhccC
Confidence 35789999999999999999999999999999999999999999999984 7887 6999998865
Q ss_pred Ccccccc-CCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccc
Q 011540 134 PREKVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTI 212 (483)
Q Consensus 134 ~r~~~~~-~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~ 212 (483)
++....+ ..+++||||+||||||||||++||++++++.+ .+.+||||++||+||+++++.+|+|.+|++|+++|||+
T Consensus 378 ~~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~ 455 (745)
T TIGR02478 378 QDKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSE 455 (745)
T ss_pred CccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcc
Confidence 2222222 34568999999999999999999999998864 35799999999999999999999999999999999999
Q ss_pred ccccCCC--ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCceeEeeecccccCCccccCCcCChhhHH
Q 011540 213 LRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (483)
Q Consensus 213 LGTsR~~--~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~ 289 (483)
|||+|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||+
T Consensus 456 LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~ 535 (745)
T TIGR02478 456 LGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTAL 535 (745)
T ss_pred cccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHH
Confidence 9999984 4799999999999999999999999999999999986655 477999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc--CCeE
Q 011540 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMV 367 (483)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~--~~~v 367 (483)
++++++||+++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++++.++++.+.+|++.. .+.+
T Consensus 536 ~~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~i 614 (745)
T TIGR02478 536 NEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKL 614 (745)
T ss_pred HHHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceE
Confidence 999999999999999998899999999999999999999999 8999999999999986656666888888764 6789
Q ss_pred EEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHH
Q 011540 368 IVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLL 447 (483)
Q Consensus 368 IVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~L 447 (483)
|+++||+...+. ...|++.|+++.+. .+++|+.+|||+|||++|+++||++|++|
T Consensus 615 iv~~Eg~~~~~~---------------------~~~l~~~i~~e~~~----~~~~R~~~LG~~QRgg~ps~~Dr~~a~~l 669 (745)
T TIGR02478 615 ILRNENASKNYT---------------------TDFIARIISEEAKG----RFDARTAVLGHMQQGGSPSPFDRNRATRL 669 (745)
T ss_pred EEEeCCCccCCC---------------------HHHHHHHHHHHhcC----CCceEeccCCccccCCCCCHHHHHHHHHH
Confidence 999999853321 34577777755432 25688999999999999999999999999
Q ss_pred HHHHHHHHHcC------------CCceEEEEECCEEEEeehhhhhh
Q 011540 448 AHSAVHGAMAG------------FTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 448 G~~AV~~~~~G------------~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
|..||+++++| .+++||+++|++++++||+++++
T Consensus 670 G~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~ 715 (745)
T TIGR02478 670 AIRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLA 715 (745)
T ss_pred HHHHHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHh
Confidence 99999999998 79999999999999999998654
No 10
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=2.1e-83 Score=648.34 Aligned_cols=295 Identities=31% Similarity=0.481 Sum_probs=271.9
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-----c
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----H 220 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-----~ 220 (483)
||||+||||||||||++||++++++.+ ++ .+|||+++||+||+++++++|+|+++++|+++|||+|||||+. +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-HG-FEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999998864 44 5999999999999999999999999999999999999999974 2
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~ 300 (483)
++++++++|++++||+|++||||||+++|++|+++ +.++|||||||||||+++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999986 3588999999999999999999999999999999999999
Q ss_pred HhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchhh
Q 011540 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEFV 379 (483)
Q Consensus 301 ~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~~ 379 (483)
++|.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ +++++|++|+++ +++++||||||+...
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~~-- 226 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIVG-- 226 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcCC--
Confidence 999997 579999999999999999999999 899999999999987 799999999987 689999999995310
Q ss_pred hccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC
Q 011540 380 AQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGF 459 (483)
Q Consensus 380 ~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~ 459 (483)
+ +..|+++|+++++ +++|+..|||+|||++|+++||.+|++||..||+++++|.
T Consensus 227 -------------------~-~~~l~~~l~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 280 (301)
T TIGR02482 227 -------------------S-AKEVAKKIEEATG------IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGK 280 (301)
T ss_pred -------------------c-HHHHHHHHHHhcC------CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 2357888877665 4577889999999999999999999999999999999999
Q ss_pred CceEEEEECCEEEEeehhhhh
Q 011540 460 TGFTVGPVNSRHAYIPIAVSS 480 (483)
Q Consensus 460 tg~mvgi~~~~~~~iPi~~v~ 480 (483)
+|+||++++++++++||++++
T Consensus 281 ~~~mv~~~~~~~~~~p~~~~~ 301 (301)
T TIGR02482 281 GGVMIGIQNNKIVTHPIEEAL 301 (301)
T ss_pred CCEEEEEECCEEEEeeHHHhC
Confidence 999999999999999999873
No 11
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1.7e-82 Score=651.97 Aligned_cols=310 Identities=30% Similarity=0.412 Sum_probs=287.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~---- 220 (483)
+||||+||||||||||++||++++++.+ ++ .+||||++||+||+++++++|+|+.+++|+++|||+|||||+++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999865 44 69999999999999999999999999999999999999999753
Q ss_pred -cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 -d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
++++++++|++++||+|++||||||+++|.+|++++++++.+++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (483)
++||.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++.++.+++.|++|+++ +++++||||||+.+..
T Consensus 159 ~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~ 236 (338)
T cd00363 159 RDTASSH-QRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFI 236 (338)
T ss_pred HHhcccC-CCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcccc
Confidence 9999995 689999999999999999999999 899999999999777777999999999887 6899999999996422
Q ss_pred hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G 458 (483)
|+. ....+|+++|+++++ ++.|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 237 --------------~~~---~~~~~l~~~i~~~~~------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g 293 (338)
T cd00363 237 --------------PKP---ITEKLLAKLVEERLG------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEG 293 (338)
T ss_pred --------------ccC---chHHHHHHHHHHHcC------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 111 124689999999875 457788999999999999999999999999999999999
Q ss_pred CCceEEEEECC---EEEEeehhhhhh
Q 011540 459 FTGFTVGPVNS---RHAYIPIAVSSA 481 (483)
Q Consensus 459 ~tg~mvgi~~~---~~~~iPi~~v~~ 481 (483)
.||+|++++|+ ++.++||+++..
T Consensus 294 ~tg~mv~~~~~~~~~~~~vpl~~~~~ 319 (338)
T cd00363 294 TGGTPVGIQNLNENQVVRHPLTEAVN 319 (338)
T ss_pred CCCcEEEEECCccCEEEEecHHHHHh
Confidence 99999999999 999999999865
No 12
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.6e-83 Score=708.47 Aligned_cols=380 Identities=20% Similarity=0.205 Sum_probs=336.0
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc
Q 011540 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR 135 (483)
Q Consensus 69 ~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g--------~r 135 (483)
..++++||.+|++.+|++|.+++.+++|+++++|++++|+.|+.|+++|. +++| +|+.+|.+++ +.
T Consensus 302 ~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~ 380 (762)
T cd00764 302 SLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMD-EKRFDEAAALRGKSFDKNWNLYKLLAIEL 380 (762)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhh-hhhHHHHHHhcchhHHHHHHHHHhccccC
Confidence 35789999999999999999999999999999999999999999999995 7787 6999999876 11
Q ss_pred cccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccc
Q 011540 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRT 215 (483)
Q Consensus 136 ~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGT 215 (483)
.....+.+++||||+||||||||||++||++|+++.. .+++||||++||+||+++++++|+|.+|++|+++|||+|||
T Consensus 381 ~~~~~~~~~~~IaIltsGG~apGmNaairavv~~a~~--~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT 458 (762)
T cd00764 381 PQPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA--HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGT 458 (762)
T ss_pred CccCCcccccEEEEEecCCCchhHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccc
Confidence 1111123458999999999999999999999998863 45799999999999999999999999999999999999999
Q ss_pred cCCC--ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCceeEeeecccccCCccccCCcCChhhHHHHH
Q 011540 216 SRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (483)
Q Consensus 216 sR~~--~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~ 292 (483)
+|+. +++++++++|++++||+|++||||||+++|++|++++.++ .+.|+|||||||||||||+||+|||||||+|++
T Consensus 459 ~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~ 538 (762)
T cd00764 459 KRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNAL 538 (762)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHH
Confidence 9985 5899999999999999999999999999999999988766 478999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc-----CCeE
Q 011540 293 QRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMV 367 (483)
Q Consensus 293 ~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~-----~~~v 367 (483)
+++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.++++.+++++. .+.+
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~ 617 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRN 617 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEee
Confidence 999999999999998899999999999999999999999 8999999999999997766777777766542 3567
Q ss_pred EEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHH
Q 011540 368 IVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLL 447 (483)
Q Consensus 368 IVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~L 447 (483)
+++|||+.... ++..+++++++ .+++|...|||+|||+.|+++||++|++|
T Consensus 618 ~~~se~~~~~~---------------------~~~~~~~~~~~--------~~~~R~~vLGh~QrGG~Ps~~DR~latr~ 668 (762)
T cd00764 618 EKCNENYTTVF---------------------TYELYSEEGKG--------VFDCRTNVLGHVQQGGAPSPFDRNFGTKF 668 (762)
T ss_pred eeeecCCcccc---------------------HHHHHHHHHhc--------CCceEecccccccCCCCCCHHHHHHHHHH
Confidence 88899873211 22334444433 26788999999999999999999999999
Q ss_pred HHHHHHHHHcC---------------CCceEEEEECCEEEEeehhhhhh
Q 011540 448 AHSAVHGAMAG---------------FTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 448 G~~AV~~~~~G---------------~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
|.+||+++++. .+.+++|++++++++.|+.++.+
T Consensus 669 g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~ 717 (762)
T cd00764 669 AVKAMKWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQ 717 (762)
T ss_pred HHHHHHHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHH
Confidence 99999999984 38899999999999999998865
No 13
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=2.9e-82 Score=644.35 Aligned_cols=294 Identities=30% Similarity=0.431 Sum_probs=272.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~----- 219 (483)
+||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|+.++.|+++|||+|||||++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 3899999999999999999999998864 4 46999999999999999999999999999999999999999984
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
+++++++++|++++||+|++||||||+++|++|+++ + ++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~----~--i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----G--FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc----C--CCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 257899999999999999999999999999999874 4 7899999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (483)
+++|+|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ +++++||||||+..
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~-- 225 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD-- 225 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC--
Confidence 9999987 589999999999999999999999 899999999999987 799999999887 68999999999852
Q ss_pred hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G 458 (483)
...|++.|+++++ +..|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 226 ----------------------~~~l~~~l~~~~g------~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g 277 (317)
T cd00763 226 ----------------------VDELAKEIEEATG------FETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAG 277 (317)
T ss_pred ----------------------HHHHHHHHHHHhC------CCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 1237778888765 346678899999999999999999999999999999999
Q ss_pred CCceEEEEECCEEEEeehhhhhh
Q 011540 459 FTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 459 ~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
++|+||++++++++++||+++.+
T Consensus 278 ~~~~mv~~~~~~~~~~pl~~~~~ 300 (317)
T cd00763 278 KGGLAVGIQNEQLVHHDIIDAIE 300 (317)
T ss_pred CCCeEEEEECCEEEEecHHHHhh
Confidence 99999999999999999999975
No 14
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.9e-81 Score=637.75 Aligned_cols=293 Identities=33% Similarity=0.474 Sum_probs=274.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~---- 220 (483)
+||||+||||||||||++||++++++.. . +.+||||++||+||+++++++|+|++++.|.++|||+|||||+..
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~-g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-E-GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-C-CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 4899999999999999999999998864 3 469999999999999999999999999999999999999999742
Q ss_pred -cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 -d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
++++++++|++++||+|++||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999863 58899999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (483)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++|+++ +++++||||||+.+.
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~~- 227 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMPA- 227 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCCH-
Confidence 9999997 579999999999999999999999 899999999999987 799999999987 789999999998641
Q ss_pred hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G 458 (483)
..|++.|+++++ +++|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 228 -----------------------~~l~~~i~~~~~------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (320)
T PRK03202 228 -----------------------EELAKEIEERTG------LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEG 278 (320)
T ss_pred -----------------------HHHHHHHHHHhC------CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 238888888776 457899999999999999999999999999999999999
Q ss_pred CCceEEEEECCEEEEeehhhhh
Q 011540 459 FTGFTVGPVNSRHAYIPIAVSS 480 (483)
Q Consensus 459 ~tg~mvgi~~~~~~~iPi~~v~ 480 (483)
+||+||+++++++.++||+++.
T Consensus 279 ~~~~~v~~~~~~~~~vpl~~v~ 300 (320)
T PRK03202 279 KGGRMVGIQNNKIVHVPIEEAV 300 (320)
T ss_pred CCCeEEEEECCEEEEEeHHHHH
Confidence 9999999999999999999998
No 15
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=5.5e-80 Score=662.84 Aligned_cols=392 Identities=24% Similarity=0.363 Sum_probs=319.5
Q ss_pred hhcCCCCCCCCCCCCCCc-ccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccC
Q 011540 80 TNFLPDLPSYPNPLKKSQ-AYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (483)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~-~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~f~~~g~r~~~~~~~~~~~iaIvtsG 153 (483)
+.|.|.+|.. |++-. .++. .....+..+...-...+.|| +...|.......+ .+.++||||++||
T Consensus 6 ~~~~p~lp~~---l~~~~~~~~~---~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~---~~~~~rIgIl~sG 76 (539)
T TIGR02477 6 LQYVPKLPKV---LQGDTANISL---EDGEPTAAVADQEELKELFPNTYGLPIITFEPGEASPD---EHQPLKIGVILSG 76 (539)
T ss_pred hhCCCCCChH---HcCCCcceEE---eccCcccCCCCHHHHHHhChHhhCCccEEEecCCCCcc---cccceEEEEECCC
Confidence 5689999998 43311 1221 12223333332222245553 4556765322111 2456899999999
Q ss_pred CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC----ccHHHHHHH
Q 011540 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (483)
Q Consensus 154 G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~----~d~~~i~~~ 228 (483)
|||||||++|+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||||++ +++++++++
T Consensus 77 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~ 156 (539)
T TIGR02477 77 GQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTT 156 (539)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999887777899999999999999999999999999999999996 99999985 368999999
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcc--ccCCcCChhhHHHHHHHHHHHHHHhhhcc
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~--gtD~S~GfdTA~~~~~~~i~~i~~~A~S~ 306 (483)
|++++||+||+||||||+++|+.|++++.+++++|+|||||||||||++ +||+|||||||+++++++|++++.|+.|+
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~ 236 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSA 236 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998 59999999999999999999999999998
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCC----CCCC-hhhHHHHHHHHHHh-cCCeEEEEeCCCCc----
Q 011540 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ---- 376 (483)
Q Consensus 307 ~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f----~l~~-~~~lle~I~~rl~~-~~~~vIVvaEGa~~---- 376 (483)
++||||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|.+|..+ ++|+|||||||+..
T Consensus 237 ~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 315 (539)
T TIGR02477 237 KKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPE 315 (539)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcch
Confidence 8899999999999999999999999 899999999997 3332 34566666777765 58999999999954
Q ss_pred ----------------------hhhhccCCc-----------------cccccccCCccchhH--HHHHHHHHHhhccCc
Q 011540 377 ----------------------EFVAQSMPA-----------------VDEKDASGNRLLLDI--GLWLTQKIKDHFTKV 415 (483)
Q Consensus 377 ----------------------~~~~~~~~~-----------------~~~~D~~Gn~~l~~i--g~~La~~I~e~~~~~ 415 (483)
.++.+.++. ...+|+|||++++++ +++|++++++++++.
T Consensus 316 ~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~ 395 (539)
T TIGR02477 316 VQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKR 395 (539)
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhh
Confidence 111111111 125899999999988 788888888776532
Q ss_pred ee-EEEEeeee----CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhhh
Q 011540 416 QK-MMINMKYI----DPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSSA 481 (483)
Q Consensus 416 ~~-~~~~~k~i----~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~~ 481 (483)
++ ..++.||+ .+||+|||+.|+.+|+.||+.||+.|++++++|.||+|++++|- ++..+|+.+++.
T Consensus 396 ~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n 473 (539)
T TIGR02477 396 KKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMN 473 (539)
T ss_pred hccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhC
Confidence 11 13567777 56999999999999999999999999999999999999999983 347899988764
No 16
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.4e-79 Score=657.17 Aligned_cols=392 Identities=23% Similarity=0.348 Sum_probs=316.6
Q ss_pred hhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccC
Q 011540 79 LTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (483)
Q Consensus 79 l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~f~~~g~r~~~~~~~~~~~iaIvtsG 153 (483)
-+.|.|.+|.. |++. ...........|+.+...-+..+.|| +...|....+. . ...+||||++||
T Consensus 10 r~~~~p~lp~~---l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~--~---~~~~~IgIl~sG 79 (555)
T PRK07085 10 RLKYRPKLPKL---LQND--PGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSES--S---SKPLKVGVILSG 79 (555)
T ss_pred HHhCCCCCCHH---HhCC--CCCceEeecCCccccCCHHHHHHhChHhhCCccEEEEeCCCC--c---ccceEEEEECCC
Confidence 35689999998 4321 11112223333444443222345553 55677765321 1 235799999999
Q ss_pred CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC----ccHHHHHHH
Q 011540 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (483)
Q Consensus 154 G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~----~d~~~i~~~ 228 (483)
|||||||++|+++++++...+++.+||||++||+||+++++++|+|+.|+.|+++||+ +|||+|++ +++++++++
T Consensus 80 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~ 159 (555)
T PRK07085 80 GQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLET 159 (555)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999998776677899999999999999999999999999999999998 99999985 368999999
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc--cCCcCChhhHHHHHHHHHHHHHHhhhcc
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g--tD~S~GfdTA~~~~~~~i~~i~~~A~S~ 306 (483)
|++++||+||+||||||+++|+.|++++++++.+|+|||||||||||+++ +|+|||||||+++++++|++++.||.|+
T Consensus 160 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s~ 239 (555)
T PRK07085 160 VKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSA 239 (555)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999995 5999999999999999999999999999
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCC----CCC-hhhHHHHHHHHHHh-cCCeEEEEeCCCCchh--
Q 011540 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFY----LEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQEF-- 378 (483)
Q Consensus 307 ~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~----l~~-~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~-- 378 (483)
++||||||+|||+|||||++||||+ +||+|||||++++ +++ .+.+++.|.+|..+ ++|+||||+||+.+.+
T Consensus 240 ~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 318 (555)
T PRK07085 240 KKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIPE 318 (555)
T ss_pred CCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCch
Confidence 8899999999999999999999999 8999999999554 332 12333444555544 5899999999996411
Q ss_pred ----h--------------------------hccCCc-----------------cccccccCCccchhH--HHHHHHHHH
Q 011540 379 ----V--------------------------AQSMPA-----------------VDEKDASGNRLLLDI--GLWLTQKIK 409 (483)
Q Consensus 379 ----~--------------------------~~~~~~-----------------~~~~D~~Gn~~l~~i--g~~La~~I~ 409 (483)
+ .+.++. ...+|+|||++++++ ++.|+++++
T Consensus 319 ~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV~ 398 (555)
T PRK07085 319 MKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVK 398 (555)
T ss_pred HHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHHH
Confidence 0 001111 125899999999988 888999998
Q ss_pred hhccCcee-----EEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehh
Q 011540 410 DHFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIA 477 (483)
Q Consensus 410 e~~~~~~~-----~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~ 477 (483)
++++..+. ..+..+...+||+|||+.|+.+|+.||+.||+.|++++++|+||+|++++|- ++..+||.
T Consensus 399 ~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~ 478 (555)
T PRK07085 399 KELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPLT 478 (555)
T ss_pred HHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHH
Confidence 88764211 1244555569999999999999999999999999999999999999999992 24789999
Q ss_pred hhhh
Q 011540 478 VSSA 481 (483)
Q Consensus 478 ~v~~ 481 (483)
++..
T Consensus 479 ~~~n 482 (555)
T PRK07085 479 MMMN 482 (555)
T ss_pred HHhc
Confidence 8764
No 17
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-79 Score=622.98 Aligned_cols=306 Identities=34% Similarity=0.475 Sum_probs=269.9
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc---
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH--- 220 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~--- 220 (483)
.+||||+||||||||||+|||++|+++.. + +.+||||++||+||+++++++|+|+++++|+++|||+|||+|.++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~-g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-E-GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-c-CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 46999999999999999999999999975 3 689999999999999999999999999999999999999999853
Q ss_pred --cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHH
Q 011540 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (483)
Q Consensus 221 --d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~ 298 (483)
..++++++|++++||+|++||||||+++|..|+|+. .++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999874 3889999999999999999999999999999999999
Q ss_pred HHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHH--hcCCeEEEEeCCCCc
Q 011540 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENGHMVIVVAEGAGQ 376 (483)
Q Consensus 299 i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~--~~~~~vIVvaEGa~~ 376 (483)
++.+++|| +|+||||+|||+|||||++||||+ +||+|+|||++|++ ...+++..++++.+ .+.|++|+++||+..
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 99777776 689999999999999999999999 89999999999987 23367777776444 357999999999975
Q ss_pred hhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHH
Q 011540 377 EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAM 456 (483)
Q Consensus 377 ~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~ 456 (483)
.+. .+|+..+..+.++++.. .+++|...+||+|||++|+++||+||++||..||++++
T Consensus 232 ~~~-----------~~~~~~~~~i~~~~~~~-----------~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~ 289 (347)
T COG0205 232 QIG-----------ENGAELLAAIEELLALG-----------DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLL 289 (347)
T ss_pred ccc-----------cchhhHHHHHHHHhhhc-----------ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 332 14554444443333322 14577889999999999999999999999999999999
Q ss_pred cCCCceEEEEECCEEEEeehhhhhh
Q 011540 457 AGFTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 457 ~G~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
+|++|+||+++|+++++.|+++..+
T Consensus 290 ~g~~~~~v~i~~~~~v~~~~~~~~~ 314 (347)
T COG0205 290 EGKTGYMVGIRNNKIVHVPIDEAVA 314 (347)
T ss_pred cCCCCceEEEeCCeeEeehhHhhhh
Confidence 9999999999999999999997654
No 18
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=7e-78 Score=646.01 Aligned_cols=393 Identities=24% Similarity=0.311 Sum_probs=320.1
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccCC
Q 011540 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCGG 154 (483)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~f~~~g~r~~~~~~~~~~~iaIvtsGG 154 (483)
..|.|.+|++ |++. +........+.|..+...-+..+.|| +..+|.+...... .+..+||||++|||
T Consensus 11 ~~~~p~lp~~---l~~~--~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~IgIl~SGG 82 (550)
T cd00765 11 INYTPKLPSV---LKGD--FNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAPS---SAPKLKIGIVLSGG 82 (550)
T ss_pred HhcCCCCChh---hcCC--ccceEEeecCcccccCCHHHHHHhChhhhCCcceEEeecCCccc---CCCCCEEEEECCCC
Confidence 4689999998 5431 11112233344444433322345553 5677876432111 14568999999999
Q ss_pred CCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC----ccHHHHHHHH
Q 011540 155 LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDNI 229 (483)
Q Consensus 155 ~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~----~d~~~i~~~l 229 (483)
||||||++|+++++.+...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++|
T Consensus 83 ~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~l 162 (550)
T cd00765 83 QAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETA 162 (550)
T ss_pred CcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHHH
Confidence 999999999999999876667889999999999999999999999999999999999 99999975 3689999999
Q ss_pred HHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhhHHHHHHHHHHHHHHhhhccC
Q 011540 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESVE 307 (483)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdTA~~~~~~~i~~i~~~A~S~~ 307 (483)
++++||+||+||||||+++|+.|++++++++++++|||||||||||++++ |+|||||||+++++++|++++.|+.|++
T Consensus 163 ~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~~ 242 (550)
T cd00765 163 KKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTG 242 (550)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999985 9999999999999999999999999999
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-----hhhHHHHHHHHHHh-cCCeEEEEeCCCCchhhh-
Q 011540 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMVIVVAEGAGQEFVA- 380 (483)
Q Consensus 308 ~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~-----~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~~~- 380 (483)
+||+|||+|||+|||||++||||+ +||+|||||++++.+. .+.+++.|++|..+ ++|++|||+||+...+..
T Consensus 243 ~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe~ 321 (550)
T cd00765 243 KYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPEV 321 (550)
T ss_pred CcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCchH
Confidence 999999999999999999999999 8999999999994332 22344555556544 579999999998651100
Q ss_pred -----c-----------------------------c-------------CC--ccccccccCCccchhH--HHHHHHHHH
Q 011540 381 -----Q-----------------------------S-------------MP--AVDEKDASGNRLLLDI--GLWLTQKIK 409 (483)
Q Consensus 381 -----~-----------------------------~-------------~~--~~~~~D~~Gn~~l~~i--g~~La~~I~ 409 (483)
+ + ++ ....+|+|||++++++ ++.|+++++
T Consensus 322 ~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV~ 401 (550)
T cd00765 322 KELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVE 401 (550)
T ss_pred HHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHHH
Confidence 0 0 00 1225899999999988 999999998
Q ss_pred hhccCc-ee----EEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehh
Q 011540 410 DHFTKV-QK----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIA 477 (483)
Q Consensus 410 e~~~~~-~~----~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~ 477 (483)
++++.. .+ ..+......+||+|||+.|+.+|+.||+.||+.|++++.+|.||+|++++|- ++..+||.
T Consensus 402 ~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl~ 481 (550)
T cd00765 402 TRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPLT 481 (550)
T ss_pred HHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccHH
Confidence 887642 11 1133345568999999999999999999999999999999999999999983 56778998
Q ss_pred hhhh
Q 011540 478 VSSA 481 (483)
Q Consensus 478 ~v~~ 481 (483)
.+..
T Consensus 482 ~~mn 485 (550)
T cd00765 482 MLMN 485 (550)
T ss_pred HHhc
Confidence 8764
No 19
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1.9e-76 Score=636.20 Aligned_cols=390 Identities=22% Similarity=0.261 Sum_probs=316.4
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccC-CccccccCCCCeeEEEEccC
Q 011540 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAG-PREKVYFKSDEVRACIVTCG 153 (483)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~f~~~g-~r~~~~~~~~~~~iaIvtsG 153 (483)
+.|.|.+|.. |++ .+. ....+.|..+...-...+.|| +...|.+.. +..+ .+..+|||||+||
T Consensus 37 ~~~~p~lp~~---l~~--~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~---~~~~~~IGIv~sG 105 (568)
T PLN02251 37 IDHALPLPSV---LKG--PFK---IVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADALS---SDQKLKIGVVLSG 105 (568)
T ss_pred HhCCCCCChh---hcC--ceE---EEecCcccccCCHHHHHHhChHhhCCceEEEeeccCcccc---ccccceEEEECcC
Confidence 5688999998 544 122 223333433333222234453 566677632 1111 1345799999999
Q ss_pred CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC----ccHHHHHHH
Q 011540 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (483)
Q Consensus 154 G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~----~d~~~i~~~ 228 (483)
|||||||+||+++++++...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 106 G~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~ 185 (568)
T PLN02251 106 GQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEET 185 (568)
T ss_pred CCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHH
Confidence 9999999999999999876667889999999999999999999999999999999998 99999984 468999999
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC--CcCChhhHHHHHHHHHHHHHHhhhcc
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD--~S~GfdTA~~~~~~~i~~i~~~A~S~ 306 (483)
|++++||+||+||||||+++|..|++++++.+.+|+|||||||||||++++| +|||||||+++++++|++++.||.|+
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~ 265 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARST 265 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-h----hhHHHHHHHHHHh-cCCeEEEEeCCCCch---
Q 011540 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-P----GGLFEFIERQLKE-NGHMVIVVAEGAGQE--- 377 (483)
Q Consensus 307 ~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~-~----~~lle~I~~rl~~-~~~~vIVvaEGa~~~--- 377 (483)
+++|+|||+|||+|||||++||||+ +||+|||||++++.+. + +.+++.|++|..+ ++|+||||+||+...
T Consensus 266 ~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ipe 344 (568)
T PLN02251 266 GKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPE 344 (568)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 8889999999999999999999999 8999999999765432 2 2344556666654 589999999999311
Q ss_pred ---hhhc------------------cCC-----------------ccccccccCCccchh--HHHHHHHHHHhhccCcee
Q 011540 378 ---FVAQ------------------SMP-----------------AVDEKDASGNRLLLD--IGLWLTQKIKDHFTKVQK 417 (483)
Q Consensus 378 ---~~~~------------------~~~-----------------~~~~~D~~Gn~~l~~--ig~~La~~I~e~~~~~~~ 417 (483)
++.+ .++ ...++|+|||+++++ .++.|+++++++++..+.
T Consensus 345 ~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk~ 424 (568)
T PLN02251 345 VQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQ 424 (568)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhcc
Confidence 0000 111 123589999999987 678899998887764211
Q ss_pred -----EEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhhh
Q 011540 418 -----MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSSA 481 (483)
Q Consensus 418 -----~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~~ 481 (483)
..|..+...+||+|||+.|+.+|+.||+.||+.|+.++.+|.||+|++++|- ++.-+||..+..
T Consensus 425 ~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn 500 (568)
T PLN02251 425 EGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMD 500 (568)
T ss_pred ccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhh
Confidence 1234556679999999999999999999999999999999999999999983 456688877653
No 20
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=8.9e-77 Score=656.57 Aligned_cols=313 Identities=21% Similarity=0.307 Sum_probs=276.4
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CeeccChhHHhchhccCcccccccCCCc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
+++||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~--~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIY--VGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHH--CCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 356999999999999999999999998863 457999999999999998 7899999999999999999999999853
Q ss_pred -----cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHH-----------------HHHHHcCCceeEeeecccccCCccc
Q 011540 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY-----------------KEVEKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 -----d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~-----------------~~~~~~g~~i~VvgIPkTIDNDi~g 278 (483)
++.+++++|++++||+||+||||||+++|+.|. ++..+++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 578999999999999999999999999999764 3334445678999999999999999
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHH
Q 011540 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (483)
Q Consensus 279 tD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~ 358 (483)
||+|||||||+++++++||+++++|.||+ |+||||||||+|||||+++|||+ +||+|||||.||+.++++.+++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh~-R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999985 79999999999999999999999 89999999999994445566666666
Q ss_pred HHHh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCC
Q 011540 359 QLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSN 437 (483)
Q Consensus 359 rl~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~ 437 (483)
+.+. +++++||||||+.+ ..|+... ...|++.|+++++ +++|...|||+|||++|+
T Consensus 238 ~~~~gk~~~iIVVaEGa~d--------------~~g~~i~---~~~l~~~l~~~~g------~d~R~t~LGh~QRGG~Ps 294 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAID--------------DQLKPIT---SEDVKDLVVERLG------LDTRVTTLGHVQRGGTPS 294 (762)
T ss_pred HHhcCCCcEEEEEeCCCcc--------------ccCCCcc---HHHHHHHHHHhcC------CCeeEeecChhhcCCCCC
Confidence 5544 47899999999852 2344332 2468888888776 456777999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCEEEEeehhhhhhc
Q 011540 438 GSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 438 a~D~~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPi~~v~~~ 482 (483)
++||++|++||..||+++++|.+ ++||+++|++++++||+++++.
T Consensus 295 a~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~ 342 (762)
T cd00764 295 AFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQL 342 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhh
Confidence 99999999999999999999986 8999999999999999998753
No 21
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=8.7e-77 Score=643.14 Aligned_cols=393 Identities=22% Similarity=0.324 Sum_probs=323.2
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHH--HHhccCCC-----Ccccccc---cCCccccccCCCCeeEEE
Q 011540 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQN--IVIQKDSP-----RGVHFRR---AGPREKVYFKSDEVRACI 149 (483)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~--~~~~~~~~-----r~~~f~~---~g~r~~~~~~~~~~~iaI 149 (483)
+.|.|.+|+. |++- .++ ....+.|..+... -...+.|| +...|.. ++|+.+.++++..+||||
T Consensus 12 ~~~~p~lp~~---l~~~-~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rIgI 84 (610)
T PLN03028 12 SLYQPELPPC---LQGT-TVR---VELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVRVGV 84 (610)
T ss_pred HhCCCCCChh---hCCC-cEE---EeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccEEEE
Confidence 5689999998 4331 122 1222333333322 11234453 5567776 348888887778899999
Q ss_pred EccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC----ccHHH
Q 011540 150 VTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNK 224 (483)
Q Consensus 150 vtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~----~d~~~ 224 (483)
|||||||||||+||+++++++...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +++++
T Consensus 85 v~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~ 164 (610)
T PLN03028 85 VFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNA 164 (610)
T ss_pred EccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHH
Confidence 99999999999999999999987777789999999999999999999999999999999998 89999964 36899
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcc--ccCCcCChhhHHHHHHHHHHHHHHh
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVE 302 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~--gtD~S~GfdTA~~~~~~~i~~i~~~ 302 (483)
++++|++++||+||+||||||+++|+.|++++++++.+++|||||||||||++ +||+|||||||+++++++|+++++|
T Consensus 165 i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni~~d 244 (610)
T PLN03028 165 ALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 244 (610)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999998 8999999999999999999999999
Q ss_pred hhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCC-CCC---CC-hhhHHHHHHHHHHh-cCCeEEEEeCCCCc
Q 011540 303 VESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP-FYL---EG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ 376 (483)
Q Consensus 303 A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~-f~l---~~-~~~lle~I~~rl~~-~~~~vIVvaEGa~~ 376 (483)
|.|+++||||||+|||+|||||++||||+ +||+|||||+. ++. .. .+.+++.|++|+++ ++|+||||+||+.+
T Consensus 245 A~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGlie 323 (610)
T PLN03028 245 ALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGLIE 323 (610)
T ss_pred HHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCccc
Confidence 99998899999999999999999999999 89999999975 322 22 24788888888854 68999999999864
Q ss_pred hhhh----------------------ccCC-----------------ccccccccCCccchh--HHHHHHHHHHhhccCc
Q 011540 377 EFVA----------------------QSMP-----------------AVDEKDASGNRLLLD--IGLWLTQKIKDHFTKV 415 (483)
Q Consensus 377 ~~~~----------------------~~~~-----------------~~~~~D~~Gn~~l~~--ig~~La~~I~e~~~~~ 415 (483)
.+.. +.++ ....+|+|||+++++ .+++|+++++++++..
T Consensus 324 ~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL~~r 403 (610)
T PLN03028 324 SIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKR 403 (610)
T ss_pred cCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHHHHH
Confidence 3100 0010 113589999999997 6678888888776543
Q ss_pred eeE------EEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhh
Q 011540 416 QKM------MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSS 480 (483)
Q Consensus 416 ~~~------~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~ 480 (483)
.+. .|+...-.+||+|||+.|+.+|+.||+.||+.|++++.+|.||+|++++|- ++..+||..+.
T Consensus 404 ~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~m 481 (610)
T PLN03028 404 TKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMM 481 (610)
T ss_pred hhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHHh
Confidence 220 222222358999999999999999999999999999999999999999983 45778998875
No 22
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.5e-76 Score=656.90 Aligned_cols=311 Identities=25% Similarity=0.354 Sum_probs=278.8
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CeeccChhHHhchhccCcccccccCCCc--
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGs~LGTsR~~~-- 220 (483)
+||||+||||||||||++||++++.+.+ + +.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~-~-g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY-V-GCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999998864 3 46999999999999999 9999999999999999999999999853
Q ss_pred ---cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHH-----------------HHHHcCCceeEeeecccccCCccccC
Q 011540 221 ---DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIAVID 280 (483)
Q Consensus 221 ---d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~-----------------~~~~~g~~i~VvgIPkTIDNDi~gtD 280 (483)
+.++++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 4589999999999999999999999999997765 33445667899999999999999999
Q ss_pred CcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHH
Q 011540 281 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQL 360 (483)
Q Consensus 281 ~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl 360 (483)
+|||||||+++++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+.++++++++.++++.
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999997 579999999999999999999999 8999999999999776667888887654
Q ss_pred Hh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChh
Q 011540 361 KE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGS 439 (483)
Q Consensus 361 ~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~ 439 (483)
+. +++++||||||+. |++||+.. ..+|++.|+++++ ++.|...|||+|||++|+++
T Consensus 237 ~~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g------~~~R~~~LGh~QRgg~Psa~ 293 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLG------LDTRITVLGHVQRGGAPSAY 293 (745)
T ss_pred HcCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcC------CceEEeecChhhcCCCCCHH
Confidence 44 5789999999984 33455443 3468888888776 34677789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCC---ceEEEEECCEEEEeehhhhhhc
Q 011540 440 DNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 440 D~~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPi~~v~~~ 482 (483)
||.+|++||..||+++++|.+ ++||++++++++++||++++++
T Consensus 294 Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~ 339 (745)
T TIGR02478 294 DRILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQ 339 (745)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhh
Confidence 999999999999999999997 9999999999999999998764
No 23
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=2e-74 Score=579.01 Aligned_cols=275 Identities=35% Similarity=0.523 Sum_probs=243.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~---- 220 (483)
+||||+||||||||||++|+++++++.+ .+.+||||++||+||+++++++|+|++++.|.++|||+|||+|+++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 4899999999999999999999998864 4469999999999999999999999999999999999999999852
Q ss_pred -cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 -d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
+.++++++|++++||+|++||||||+++|++|++++. ++|||||||||||+|+||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 4678999999999999999999999999999997753 8899999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc-CCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~-~~~vIVvaEGa~~~~ 378 (483)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.|++++ .+++.|+++++++ ++++||||||+...
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~- 227 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDG- 227 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSS-
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEeccccccc-
Confidence 9999987 689999999999999999999999 899999999998776 8999999988764 68999999999641
Q ss_pred hhccCCccccccccCCccchhH-HHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 011540 379 VAQSMPAVDEKDASGNRLLLDI-GLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 457 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~i-g~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~ 457 (483)
..+ .+.+.+..++..+ +++|+..|||+|||++|+++||.+|++||.+||+++++
T Consensus 228 -------------------~~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 228 -------------------QPISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp -------------------HBHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------ccccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 011 1335555444444 46888999999999999999999999999999999874
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.2e-73 Score=644.28 Aligned_cols=391 Identities=24% Similarity=0.310 Sum_probs=313.4
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHH--HHhccCCC-----CcccccccCC--ccccccCCCCeeEEEE
Q 011540 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQN--IVIQKDSP-----RGVHFRRAGP--REKVYFKSDEVRACIV 150 (483)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~--~~~~~~~~-----r~~~f~~~g~--r~~~~~~~~~~~iaIv 150 (483)
..|.|.+|++ |++ .+.+ ...+.|..+... -+..+.|| +...|..+.. ..... ...+|||||
T Consensus 39 ~~~~p~lp~~---l~~--~~~~---~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~~--~~~krIGIL 108 (1328)
T PTZ00468 39 RRWEPCLPHI---LRS--PLSI---KEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKK--FPARRIGVV 108 (1328)
T ss_pred HhcCCCCChH---hcC--ceEE---eecCCcccccCcchHHHHHhCccccCCcceEEeecCCCcccccc--ccCCEEEEE
Confidence 4589999998 543 2221 222333333322 12234453 5667776321 11111 134799999
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC----ccHHHH
Q 011540 151 TCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKI 225 (483)
Q Consensus 151 tsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~----~d~~~i 225 (483)
||||||||||+||+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||+|++ ++++++
T Consensus 109 tSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~ 188 (1328)
T PTZ00468 109 LSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188 (1328)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHH
Confidence 9999999999999999998875567789999999999999999999999999999999997 99999975 368999
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc--cCCcCChhhHHHHHHHHHHHHHHhh
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEV 303 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g--tD~S~GfdTA~~~~~~~i~~i~~~A 303 (483)
+++|++++||+||+||||||+++|.+|+++++++|.+++|||||||||||+++ ||+|||||||+++++++|++++.+|
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A 268 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAI 268 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-----hhhHHHHHHHHHHh-cCCeEEEEeCCCCch
Q 011540 304 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMVIVVAEGAGQE 377 (483)
Q Consensus 304 ~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~-----~~~lle~I~~rl~~-~~~~vIVvaEGa~~~ 377 (483)
.|+++||||||+|||+|||||++||||+ +||+|||||++++.+. .+.+++.|.+|.+. ++|+||||+||+.+.
T Consensus 269 ~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGlief 347 (1328)
T PTZ00468 269 KTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEF 347 (1328)
T ss_pred hhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCcccc
Confidence 9987899999999999999999999999 8999999999988432 22344555555544 579999999998621
Q ss_pred ----------------------hhhccCC-----------------ccccccccCCccchhHH--HHHHHHHHhhccCce
Q 011540 378 ----------------------FVAQSMP-----------------AVDEKDASGNRLLLDIG--LWLTQKIKDHFTKVQ 416 (483)
Q Consensus 378 ----------------------~~~~~~~-----------------~~~~~D~~Gn~~l~~ig--~~La~~I~e~~~~~~ 416 (483)
++.+.++ ...++|+|||+++++++ ++|++++++++.+..
T Consensus 348 Ipe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~~~ 427 (1328)
T PTZ00468 348 IPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEEVK 427 (1328)
T ss_pred ccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHHhh
Confidence 1111110 11358999999999877 888888888774221
Q ss_pred eE--EEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhhh
Q 011540 417 KM--MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSSA 481 (483)
Q Consensus 417 ~~--~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~~ 481 (483)
.. .+..+.=.+||+|||+.|+.+|+.||+.||..|++++.+|.||+|++++|. ++..+||..+..
T Consensus 428 ~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn 501 (1328)
T PTZ00468 428 KDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMN 501 (1328)
T ss_pred cccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhh
Confidence 10 112333358999999999999999999999999999999999999999984 456788887753
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-72 Score=640.38 Aligned_cols=338 Identities=26% Similarity=0.340 Sum_probs=287.1
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCCC--
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG-- 219 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~~-- 219 (483)
.++||||++|||||||||++|+++++++....++++||||++||+||+++++++|+|.++++|+++||+ +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 458999999999999999999999998865556789999999999999999999999999999999997 89999974
Q ss_pred --ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcc--ccCCcCChhhHHHHHHHH
Q 011540 220 --HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRA 295 (483)
Q Consensus 220 --~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~--gtD~S~GfdTA~~~~~~~ 295 (483)
+++++++++|++++||+||+||||||+++|.+|++++++.+++++||||||||||||+ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-hhhHH----HHHHHHHHh-cCCeEEE
Q 011540 296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLF----EFIERQLKE-NGHMVIV 369 (483)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~-~~~ll----e~I~~rl~~-~~~~vIV 369 (483)
|++++.++.+++++|||||+|||+|||||++||||+ +||+|||||++|+.+. ++++. +.+.+|... ++|+|||
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999988887889999999999999999999999 8999999998765432 33443 334445443 5799999
Q ss_pred EeCCCCchh-------------------hhccC----------------CccccccccCCccchhHHH--HHHHHHHhhc
Q 011540 370 VAEGAGQEF-------------------VAQSM----------------PAVDEKDASGNRLLLDIGL--WLTQKIKDHF 412 (483)
Q Consensus 370 vaEGa~~~~-------------------~~~~~----------------~~~~~~D~~Gn~~l~~ig~--~La~~I~e~~ 412 (483)
||||+.+.+ ..+.+ +...++|+|||+++++++. .|++++++++
T Consensus 415 VsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 415 IPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred EeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 999987511 00110 0113589999999987654 5555555544
Q ss_pred cCc--eeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhhh
Q 011540 413 TKV--QKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSSA 481 (483)
Q Consensus 413 ~~~--~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~~ 481 (483)
... .+..++.+...+||+|||+.|+.+|+.||+.||..|++++.+|.||+|++++|- ++..+||..+..
T Consensus 495 ~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 495 AKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 311 112467778889999999999999999999999999999999999999999882 456788887753
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.3e-65 Score=578.09 Aligned_cols=334 Identities=17% Similarity=0.190 Sum_probs=278.7
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccc-cccCCC-
Q 011540 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL-RTSRGG- 219 (483)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~L-GTsR~~- 219 (483)
+..+|||||||||||||||+|||++++++...++ .++| ++||.||+++++++|+.++|++|+++|||+| ||+|..
T Consensus 834 ~~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g--~~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~ 910 (1419)
T PTZ00287 834 SFEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKG--VCIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHS 910 (1419)
T ss_pred cCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCC--eEEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCC
Confidence 3568999999999999999999999999865443 2455 5599999999999999999999999999988 999963
Q ss_pred ----ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc--cCCcCChhhHHHHHH
Q 011540 220 ----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQ 293 (483)
Q Consensus 220 ----~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g--tD~S~GfdTA~~~~~ 293 (483)
+.+++++++|++++||+||+||||||+++|..|++++.+.|++++|||||||||||+.+ ||+|||||||+++++
T Consensus 911 f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~s 990 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYA 990 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-----hhhHHHHHHHHHHh-cCCeE
Q 011540 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-----PGGLFEFIERQLKE-NGHMV 367 (483)
Q Consensus 294 ~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~-----~~~lle~I~~rl~~-~~~~v 367 (483)
++|++++.+|.|+++||||||+|||+|||||++||||+ +||+|||||++++.+. .+.+++.|++|.++ +.|+|
T Consensus 991 eaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygI 1069 (1419)
T PTZ00287 991 SLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGT 1069 (1419)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEE
Confidence 99999999999999889999999999999999999999 8999999999987321 23566677777765 47899
Q ss_pred EEEeCCCCch-------------hhhc----------------------------------------------cCC----
Q 011540 368 IVVAEGAGQE-------------FVAQ----------------------------------------------SMP---- 384 (483)
Q Consensus 368 IVvaEGa~~~-------------~~~~----------------------------------------------~~~---- 384 (483)
|||+||.-.. ++.+ .++
T Consensus 1070 VlV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~ 1149 (1419)
T PTZ00287 1070 VLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSL 1149 (1419)
T ss_pred EEEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHH
Confidence 9999997311 1100 111
Q ss_pred ------------ccccccccCCccchhH--HHHHHHHHHhhccCcee-----EEEEeeeeCCCccccCCCCChhhHHHHH
Q 011540 385 ------------AVDEKDASGNRLLLDI--GLWLTQKIKDHFTKVQK-----MMINMKYIDPTYMIRAIPSNGSDNIYCT 445 (483)
Q Consensus 385 ------------~~~~~D~~Gn~~l~~i--g~~La~~I~e~~~~~~~-----~~~~~k~i~pgy~qRg~~p~a~D~~~a~ 445 (483)
....+|. ||+++..| -+.|++++++++...+. ..|...+=-.||..||+.|+-||+.|||
T Consensus 1150 ~lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y 1228 (1419)
T PTZ00287 1150 ALLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAY 1228 (1419)
T ss_pred HHHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHH
Confidence 1125788 99988643 45666666665542211 1122222237999999999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhh
Q 011540 446 LLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSS 480 (483)
Q Consensus 446 ~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~ 480 (483)
.||+.|..++..|.||+|++++|= +..-+||..++
T Consensus 1229 ~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm 1270 (1419)
T PTZ00287 1229 SYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLM 1270 (1419)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhh
Confidence 999999999999999999999882 66778887654
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.6e-56 Score=505.68 Aligned_cols=333 Identities=16% Similarity=0.198 Sum_probs=266.2
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe--eccC----hhHHhchhccCccccccc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT--LTLS----PKVVNDIHKRGGTILRTS 216 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~--~~L~----~~~v~~i~~~GGs~LGTs 216 (483)
..+++|||..|||+||+|+||++++..+.+ .+ |+||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~ 749 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLPS-LK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNG 749 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHHh-CC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecc
Confidence 347999999999999999999999998863 22 9999999999999874 4565 578999999999999999
Q ss_pred ----------CCC---------c---------------cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC--
Q 011540 217 ----------RGG---------H---------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-- 260 (483)
Q Consensus 217 ----------R~~---------~---------------d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-- 260 (483)
|.. + +.+.+.++|++++||+|++||||||+++|+.|++++.+++
T Consensus 750 ~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~ 829 (1328)
T PTZ00468 750 VEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLN 829 (1328)
T ss_pred ccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccc
Confidence 631 1 3478999999999999999999999999999999988764
Q ss_pred ---CceeEeeecccccCCccc--cCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCc
Q 011540 261 ---LQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD 335 (483)
Q Consensus 261 ---~~i~VvgIPkTIDNDi~g--tD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad 335 (483)
..++|||||||||||+++ ||+|||||||+++++++|.++..|+.|+++||||||+|||+|||||+++|||+ +||
T Consensus 830 ~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gan 908 (1328)
T PTZ00468 830 GMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPN 908 (1328)
T ss_pred cccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCC
Confidence 469999999999999987 99999999999999999977777777777899999999999999999999999 899
Q ss_pred EEecCCCCC--------------CCCC-hhhHHHHHHHHHHh-cCCeEEEEeCCCCchh---------hhc---------
Q 011540 336 CCLIPESPF--------------YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQEF---------VAQ--------- 381 (483)
Q Consensus 336 ~vlIPE~~f--------------~l~~-~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~---------~~~--------- 381 (483)
+|+|||++. +++. .+.+++.|.+|.+. +.|++|||+||+.+.+ +.+
T Consensus 909 ivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~ 988 (1328)
T PTZ00468 909 LVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNA 988 (1328)
T ss_pred EEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhccccc
Confidence 999999983 3221 22455666667655 4689999999984322 111
Q ss_pred ------------cCC-----------c-------cccccccCCccchhH--HHHHHHHHHhhccCcee-EEEEeee----
Q 011540 382 ------------SMP-----------A-------VDEKDASGNRLLLDI--GLWLTQKIKDHFTKVQK-MMINMKY---- 424 (483)
Q Consensus 382 ------------~~~-----------~-------~~~~D~~Gn~~l~~i--g~~La~~I~e~~~~~~~-~~~~~k~---- 424 (483)
.++ . ..-.|..||+++..| ...|++++++++...+. -.++.+|
T Consensus 989 ~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~ 1068 (1328)
T PTZ00468 989 SNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVC 1068 (1328)
T ss_pred cchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceee
Confidence 011 0 000233499888754 45677777665542211 0122222
Q ss_pred eCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC-CceEEEEECC-------EEEEeehhhhh
Q 011540 425 IDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGF-TGFTVGPVNS-------RHAYIPIAVSS 480 (483)
Q Consensus 425 i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~-tg~mvgi~~~-------~~~~iPi~~v~ 480 (483)
--.||..||+.|+-||+.|||.||+.|..++.+|. ||+|.+++|= +...+||..++
T Consensus 1069 HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm 1132 (1328)
T PTZ00468 1069 FSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLM 1132 (1328)
T ss_pred ccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhh
Confidence 23799999999999999999999999999999999 6999999883 66778887764
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-50 Score=432.05 Aligned_cols=413 Identities=39% Similarity=0.528 Sum_probs=372.3
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHh--ccCCCCcccccccCCccccccCCCCee
Q 011540 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVI--QKDSPRGVHFRRAGPREKVYFKSDEVR 146 (483)
Q Consensus 69 ~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~--~~~~~r~~~f~~~g~r~~~~~~~~~~~ 146 (483)
.++..|+..+...+.|++|.+++++..|+.++.+...++..++.|.+.+.. .....+..+|.+.+|+++++|.++.+|
T Consensus 43 ~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk 122 (666)
T KOG2440|consen 43 GDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVK 122 (666)
T ss_pred ccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhh
Confidence 368999999999999999999999999999999999999999999998742 334457778999999999999999999
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHH-HhCCCcEEEEEccc----------------ccccccCCe--eccChhHHhchhc
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLS-YMYGVDEILGIEGG----------------YRGFYSKNT--LTLSPKVVNDIHK 207 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~-~~~~~~~V~Gi~~G----------------~~GL~~~~~--~~L~~~~v~~i~~ 207 (483)
+|||||||.|||.|.+|+++|-.+. ..|+...++|+.-+ ++||+...+ .-+....|..|+.
T Consensus 123 ~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~ 202 (666)
T KOG2440|consen 123 AGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAG 202 (666)
T ss_pred cceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhc
Confidence 9999999999999999999999886 67888899998877 999998888 5666778999999
Q ss_pred cCcccccccCCCcc---HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCC
Q 011540 208 RGGTILRTSRGGHD---TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (483)
Q Consensus 208 ~GGs~LGTsR~~~d---~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~G 284 (483)
.++++++++|..++ +.++++..+++++|.||||||+++.++|..++++++++.++..++++||||||||+-.+.++|
T Consensus 203 ~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~a 282 (666)
T KOG2440|consen 203 GADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSA 282 (666)
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCcccc
Confidence 99999999999877 889999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh--hHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCC--------------------
Q 011540 285 FD--TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPES-------------------- 342 (483)
Q Consensus 285 fd--TA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~-------------------- 342 (483)
|| ||++..+++|.+++.+|.|+.+++.||++|||+|+++|++++||+++.|+|++||.
T Consensus 283 fDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~ 362 (666)
T KOG2440|consen 283 FDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDP 362 (666)
T ss_pred cchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhcccc
Confidence 88 99999999999999999999999999999999999999999999999999999999
Q ss_pred -----CCCCC--ChhhHHHHHHHHHHhcCCeEEEEeCCCCchhhhccCCcc-ccccccCCccchhHHHHHHHHHHhhccC
Q 011540 343 -----PFYLE--GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAV-DEKDASGNRLLLDIGLWLTQKIKDHFTK 414 (483)
Q Consensus 343 -----~f~l~--~~~~lle~I~~rl~~~~~~vIVvaEGa~~~~~~~~~~~~-~~~D~~Gn~~l~~ig~~La~~I~e~~~~ 414 (483)
||+.+ ..-.++.+..+++....|.+++++|++++.++....... ..+|++++..+.|++.|+.+-.++++.+
T Consensus 363 ~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk 442 (666)
T KOG2440|consen 363 RAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALGTK 442 (666)
T ss_pred ccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhheec
Confidence 88877 444566788889999999999999999987765544321 2359999999999999999999988764
Q ss_pred cee-EEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCEEEEeehhhhhh
Q 011540 415 VQK-MMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 415 ~~~-~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
... ...+++||+|.|++|..+.+..|-.||..+++.++|.+++++|++.+++++....+.|.-..++
T Consensus 443 ~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~ 510 (666)
T KOG2440|consen 443 RETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTE 510 (666)
T ss_pred ccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccc
Confidence 321 3568999999999999999999999999999999999999999999999999988888765443
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=404.14 Aligned_cols=373 Identities=18% Similarity=0.195 Sum_probs=325.3
Q ss_pred cCCCcceeccccccccccC-----CCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC
Q 011540 49 SRQNRPVVVAVRSSNQKVH-----NDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS 123 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~-----~~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~ 123 (483)
..-+|.+.|+...+..+-. -..+..|||.++++.+|+ .+.+|+++|+|+++++..|..++.++. +++|
T Consensus 264 ~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~~-~~d~ 336 (666)
T KOG2440|consen 264 VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLASR-DKDF 336 (666)
T ss_pred ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhcC-ccce
Confidence 3344555555443333332 346789999999999988 589999999999999999999999984 6776
Q ss_pred -----CCcccccccC----------Cccc-cccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccc
Q 011540 124 -----PRGVHFRRAG----------PREK-VYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYR 187 (483)
Q Consensus 124 -----~r~~~f~~~g----------~r~~-~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~ 187 (483)
+|+.+|..++ |+.. .+| ..+++++|++.|.|+.|||++++++++.+. ..++++|++.+||+
T Consensus 337 ~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~ 413 (666)
T KOG2440|consen 337 CLAPELRGRKFTLNLNTYKILDVVDPRAEQDPF-YGEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFE 413 (666)
T ss_pred eehhhhcchhhhhhhhHHhhhhccccccccCCC-CceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchh
Confidence 4888888875 3322 222 223679999999999999999999999885 56789999999999
Q ss_pred ccccCCeeccChhHHhchhccCcccccccCCC---ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCce
Q 011540 188 GFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQV 263 (483)
Q Consensus 188 GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~---~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i 263 (483)
||..+...++.|.+|..|..+||+.+||.|.. .+++.|..+|++++|++|+++||+.++.+...|+..+..+ ++++
T Consensus 414 gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i 493 (666)
T KOG2440|consen 414 GLAKDALGELIWKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDI 493 (666)
T ss_pred hhhhhhhhhhHHHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCccc
Confidence 99998899999999999999999999999973 3899999999999999999999999999999999888777 9999
Q ss_pred eEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCC
Q 011540 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP 343 (483)
Q Consensus 264 ~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~ 343 (483)
++|.+|.|+.|++|+|++|.|-|||+|.+++.++.+++.|..+++++|++|+||.+|||||.+++|+. +++.+|+||++
T Consensus 494 ~~v~ip~t~snnvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~~ 572 (666)
T KOG2440|consen 494 PMVNIPATYSNNVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEEG 572 (666)
T ss_pred ceEEeeeeecCCccccccccccchhHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccc-ccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CCCCChhhHHHHHHHHHHhc-CCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEe
Q 011540 344 FYLEGPGGLFEFIERQLKEN-GHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINM 422 (483)
Q Consensus 344 f~l~~~~~lle~I~~rl~~~-~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~ 422 (483)
|+++.++...+++..+++.. +..+++.+||+..++.+ .+|.+.+.+..+. .++.
T Consensus 573 ~~~~~l~~~~~~~~~k~~~~~~~~l~~r~e~a~~~~~t---------------------~~~~~~~~~~~~~----~f~~ 627 (666)
T KOG2440|consen 573 FSIKDLRENAEHLAEKMRYGNPRGLQLRNEGADANYTT---------------------LFLENIYSEEGKG----KFQA 627 (666)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCCceEEeCCCcchhhhH---------------------HHHHHHHhhhccc----ccce
Confidence 99998888888888887764 45699999999887753 4577777766442 4889
Q ss_pred eeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 011540 423 KYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMA 457 (483)
Q Consensus 423 k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~ 457 (483)
++..|||+|+|+.|+++||.++++||..|++++..
T Consensus 628 ~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~~~~~~ 662 (666)
T KOG2440|consen 628 RTNVLGHIQQGGSPSPFDRNMGTKMAVKAIELITI 662 (666)
T ss_pred eeccccceecCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999864
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=92.99 E-value=0.29 Score=49.13 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=42.3
Q ss_pred HHHHHHHcCC------cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH---HHHHHHH
Q 011540 225 IVDNIEDRGI------NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA---VEEAQRA 295 (483)
Q Consensus 225 i~~~l~~~~I------d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA---~~~~~~~ 295 (483)
.-+-.++|++ |.+++||||||+-.|..... ...+||+||-. -++||-|. .+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~~ 75 (246)
T PRK04761 11 LEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLER 75 (246)
T ss_pred HHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHHH
Confidence 3344566777 99999999999987665532 34688999964 26899884 3555555
Q ss_pred HHHHH
Q 011540 296 INAAH 300 (483)
Q Consensus 296 i~~i~ 300 (483)
++++.
T Consensus 76 l~~~~ 80 (246)
T PRK04761 76 IAAAE 80 (246)
T ss_pred HHHhh
Confidence 65554
No 31
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.57 E-value=0.51 Score=47.79 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~~~~i~~i~~ 301 (483)
+.|.++++|||||+-.|...... .-.++|++||.. -++||-|.++ .+.++++++..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHc
Confidence 46899999999998776655431 114688999963 3699999753 45666666643
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.90 E-value=0.63 Score=47.67 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~ 301 (483)
+.|.+++||||||+-.|...+. ..++||+||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999766655432 34688999842 379999874 556667776643
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.35 E-value=0.39 Score=48.50 Aligned_cols=61 Identities=23% Similarity=0.381 Sum_probs=41.2
Q ss_pred HHHHHHHHcCC-----cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH--HHHH-H
Q 011540 224 KIVDNIEDRGI-----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQR-A 295 (483)
Q Consensus 224 ~i~~~l~~~~I-----d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~~~-~ 295 (483)
++.+.++.+++ |.+++||||||+-.|...+. ..++||+||-. | ++||-|.++ .+.+ .
T Consensus 19 ~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~-------G---~lGFL~~~~~~~~~~~~ 83 (259)
T PRK00561 19 KLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT-------G---HLGFYTSFNETDLDQNF 83 (259)
T ss_pred HHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec-------C---CCccccccCHHHHHHHH
Confidence 34445555555 99999999999887665543 35688999952 2 699999654 3444 4
Q ss_pred HHHH
Q 011540 296 INAA 299 (483)
Q Consensus 296 i~~i 299 (483)
++.+
T Consensus 84 ~~~l 87 (259)
T PRK00561 84 ANKL 87 (259)
T ss_pred HHHH
Confidence 4544
No 34
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.19 E-value=0.8 Score=46.40 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCC-ceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGL-QVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~-~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~ 300 (483)
+.|.++++|||||+-.|..... .. +++++||.. +-++||-|.+ +.+.++++++.
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAIT 95 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHH
Confidence 3689999999999877665432 22 467888843 2488998764 44556666654
No 35
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=88.54 E-value=0.27 Score=49.88 Aligned_cols=62 Identities=24% Similarity=0.528 Sum_probs=43.0
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHH
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~ 301 (483)
..+.+...+.|.++++|||||+..+..... ..++||+||+. -+.||-|.. +.+.++++.+..
T Consensus 68 ~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 68 ALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp CCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 344456789999999999999988776643 35799999984 356776653 344555555544
No 36
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.35 E-value=0.62 Score=48.16 Aligned_cols=54 Identities=30% Similarity=0.438 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~ 301 (483)
+.|.++++|||||+-.|..... ..++||+||.. -++||-|.+ +.+.++++++..
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHc
Confidence 6899999999999887766543 34588999963 378998875 555667766654
No 37
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.24 E-value=0.84 Score=46.88 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHHh
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~~ 302 (483)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++...
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcC
Confidence 6899999999999876665543 34688999953 368999986 4566777776543
No 38
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=88.18 E-value=0.89 Score=48.84 Aligned_cols=122 Identities=22% Similarity=0.348 Sum_probs=70.4
Q ss_pred CCeeEEEEccCCCCcchhH-HHHHH--HHHHHHh------CCCcEEEEEcccccccccC----CeeccChhHHhchhccC
Q 011540 143 DEVRACIVTCGGLCPGINT-VIREI--VCGLSYM------YGVDEILGIEGGYRGFYSK----NTLTLSPKVVNDIHKRG 209 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNa-vIr~i--v~~~~~~------~~~~~V~Gi~~G~~GL~~~----~~~~L~~~~v~~i~~~G 209 (483)
++.|||+||+||.-|--|. -|.+. ..+..+. ..-.+..-+|.||.--+-+ .+++|+. +..+...|
T Consensus 222 ~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLekEG 299 (431)
T TIGR01918 222 SKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVDV--LRDYEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccccCccceEEeccccChHHHhcCCCeeeeHHH--HHHHHHcC
Confidence 4579999999999998884 44321 1100000 0012233455666554321 1333332 22222222
Q ss_pred --c----ccc-----cccCC--CccHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCceeEeee
Q 011540 210 --G----TIL-----RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 210 --G----s~L-----GTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
| .+. ||++. ...-.+|++.|++-++|+++....=|| .+....+.+++++.|++ ||.+
T Consensus 300 ~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiP--vv~~ 370 (431)
T TIGR01918 300 KIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHM 370 (431)
T ss_pred CcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 1 111 22221 234689999999999999999988887 55567788999988855 5544
No 39
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=88.08 E-value=1.7 Score=46.78 Aligned_cols=122 Identities=23% Similarity=0.349 Sum_probs=70.6
Q ss_pred CCeeEEEEccCCCCcchhH-HHH--HHHHHHHHh------CCCcEEEEEcccccccccC----CeeccChhHHhchhccC
Q 011540 143 DEVRACIVTCGGLCPGINT-VIR--EIVCGLSYM------YGVDEILGIEGGYRGFYSK----NTLTLSPKVVNDIHKRG 209 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNa-vIr--~iv~~~~~~------~~~~~V~Gi~~G~~GL~~~----~~~~L~~~~v~~i~~~G 209 (483)
++.|||+||+||.-|--|. -|. ++-++..+. ....+..-+|.||.--+-+ .+++|+. +..+...|
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLe~EG 299 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVDV--LRDLEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHHH--HHHHHHcC
Confidence 5679999999999997776 232 111110000 0012334456666654421 1333332 23322222
Q ss_pred --c----ccc-----cccCC--CccHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCceeEeee
Q 011540 210 --G----TIL-----RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 210 --G----s~L-----GTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
| .+. ||++. ...-++|++.|++.++|+++..-.=|| .+....+.+++++.|++ +|.|
T Consensus 300 ~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIP--vV~i 370 (431)
T TIGR01917 300 KIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHI 370 (431)
T ss_pred CcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 1 111 23332 235688999999999999999987777 55567788999988865 4443
No 40
>PLN02929 NADH kinase
Probab=88.06 E-value=0.88 Score=47.00 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=39.6
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc---cccCCc-ccc----CCcCChhhHHH--HHHHHHHHHH
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK---TIDNDI-AVI----DKSFGFDTAVE--EAQRAINAAH 300 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk---TIDNDi-~gt----D~S~GfdTA~~--~~~~~i~~i~ 300 (483)
.+.|.++++|||||+-.|.... ...+||+||-. +.+.-- ... ..++||-|+++ .+.++++++.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il 135 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVL 135 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHH
Confidence 4678999999999987766543 23588999843 221110 011 13899999854 4455666554
No 41
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.61 E-value=1.5 Score=44.08 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=36.9
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH--HHHHHHHHHH
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE--AQRAINAAHV 301 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~--~~~~i~~i~~ 301 (483)
.+.|.+++||||||+-.|.... ++||+||- . -++||-|..+. +.++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin-------~---G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFK-------A---GRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEe-------C---CCCccccccCHHHHHHHHHHHHc
Confidence 4679999999999997665432 57899985 1 26899987543 4556665543
No 42
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.37 E-value=0.93 Score=46.84 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~ 300 (483)
++|.+++||||||+-.|..... ..++|++||-. -++||-|.+ +.+.++++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999877665543 35688999942 389999874 44555565553
No 43
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.20 E-value=0.93 Score=46.64 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~ 300 (483)
+.|.++++|||||+-.|..... ...+|++||-. -++||-|.+ +.+.++++++.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHH
Confidence 6899999999999987766543 34688999952 269999984 44566666654
No 44
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.85 E-value=1.3 Score=45.59 Aligned_cols=52 Identities=27% Similarity=0.516 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH--HHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAA 299 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~~~~i~~i 299 (483)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.++ .+.++++++
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i 116 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDV 116 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHH
Confidence 6899999999999877765543 34588999852 3689988865 344455554
No 45
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=86.10 E-value=1.1 Score=46.93 Aligned_cols=51 Identities=37% Similarity=0.635 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+|+-..++.+.++++|-+++.|||||.+... +.. +-++||.|||.=.-|=.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa---~av---~~~vPvLGipaGvk~~S 137 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVA---EAV---GADVPVLGIPAGVKNYS 137 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHH---hhc---cCCCceEeeccccceec
Confidence 6888999999999999999999999987654 322 45799999997555443
No 46
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.61 E-value=24 Score=33.94 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=68.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTNK 224 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~~ 224 (483)
+||++...-..|-...+++++.+.+.....+..++ +.++... ....+
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47888876677888888888888775321111111 1112222 22346
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhh
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~ 304 (483)
.++.+...++|++++.+.+.. ......+++.+++ +|||.+=. +.+..+.++|+|.. .....+.+.+.....
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~--~~~~~i~~~~~~~--ipvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSK--GIAPAVKRAQAAG--IVVVAVDV----AAEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChh--HhHHHHHHHHHCC--CeEEEecC----CCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 777788899999998876542 1122224444555 56776632 22233456666642 223333333333323
Q ss_pred ccCCceEEEE
Q 011540 305 SVENGVGIVK 314 (483)
Q Consensus 305 S~~~rv~iVE 314 (483)
.+ ++|.++-
T Consensus 120 g~-~~i~~i~ 128 (271)
T cd06321 120 GK-GNVAILN 128 (271)
T ss_pred CC-ceEEEEe
Confidence 44 4677764
No 47
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=84.97 E-value=1.3 Score=48.64 Aligned_cols=53 Identities=32% Similarity=0.429 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~ 300 (483)
++|.+|+||||||+-.|..+.. ...+||+||. --++||-|.+ +.+.++++++.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHH
Confidence 6899999999999987776643 3457899983 2479999875 34555666654
No 48
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.96 E-value=1.6 Score=44.84 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~ 301 (483)
+.|.++++|||||+-.+..... ..++||+||.. -++||-|.. +.+.++++.+..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHc
Confidence 6899999999999887765432 35688999974 368999874 446667776643
No 49
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=82.89 E-value=41 Score=31.43 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=72.6
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
|||++..+-..|-.+..++++-..+.. .+. ++. + +.+........+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~-~l~-------------~------------------~~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGY-QVL-------------L------------------ANSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCC-eEE-------------E------------------EeCCCCHHHHHHH
Confidence 588999877788888888888777653 221 111 0 0011111234567
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhc
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S 305 (483)
++.+...++|++++.+.+.+... ..+.+.+.+ +++|.+-.+.++ .....++++|.. +....+.+.+....
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~g-- 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEKG-- 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHhc--
Confidence 77777889999999887766543 223333334 668887666554 122335555543 23344444444332
Q ss_pred cCCceEEEEec
Q 011540 306 VENGVGIVKLM 316 (483)
Q Consensus 306 ~~~rv~iVEvM 316 (483)
.+++.++-..
T Consensus 118 -~~~i~~i~~~ 127 (264)
T cd01537 118 -HRRIALLAGP 127 (264)
T ss_pred -CCcEEEEECC
Confidence 3567777543
No 50
>PRK11914 diacylglycerol kinase; Reviewed
Probab=82.08 E-value=2.5 Score=43.04 Aligned_cols=69 Identities=30% Similarity=0.516 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhh-HHHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAI 296 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdT-A~~~~~~~i 296 (483)
.+..++++...+.+.|.++++|||||...+.. .+. +.++++..||.==-||+. +++|..+ -.+.+.+.+
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 45677777777788999999999999886542 222 345778889988889987 5777764 344444443
No 51
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=81.98 E-value=5.7 Score=43.10 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc
Q 011540 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 141 ~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
+.-+.+|||||| ++. ||||-+...+..+++..+|+-+.-=. +|=.. .+
T Consensus 132 P~~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~V---------------------QG~~A------~~ 179 (440)
T COG1570 132 PFFPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLV---------------------QGEGA------AE 179 (440)
T ss_pred CCCCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCCCc------HH
Confidence 344569999998 544 68999999998888876776332211 11000 12
Q ss_pred cHHHHHHHHHHcC-CcEEEEEcCCCchHHHHHHHHHHHHc---CCceeEeee
Q 011540 221 DTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVAGI 268 (483)
Q Consensus 221 d~~~i~~~l~~~~-Id~LvvIGGdgS~~~A~~L~~~~~~~---g~~i~VvgI 268 (483)
.+-+.++.+.+++ +|.|||.=|-||...-..+.+|.-.+ ..+||||.-
T Consensus 180 eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 180 EIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred HHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEee
Confidence 3345555555665 99999999999999887777765443 556777743
No 52
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=81.69 E-value=14 Score=37.10 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=94.0
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
.||||..--.-|=--.+++++-+.+.+ ++. .+ +|.++....+.++.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~-~Gy-~l--------------------------------~l~~t~~~~~~e~~ 48 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEARE-HGY-QL--------------------------------LLCNTGDDEEKEEY 48 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHH-TTC-EE--------------------------------EEEEETTTHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHH-cCC-EE--------------------------------EEecCCCchHHHHH
Confidence 566666555555555666666666643 221 22 23344444555689
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC--ccccCCcCChhhHHHHHHHHHHHHHHhh
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND--IAVIDKSFGFDTAVEEAQRAINAAHVEV 303 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND--i~gtD~S~GfdTA~~~~~~~i~~i~~~A 303 (483)
++.|.++++|++++.+-.........+.+ . .+|||.+=.+.+++ ++ ++..| =.+...++.+.+. .
T Consensus 49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~~~----~V~~D-~~~a~~~a~~~Li--~ 115 (279)
T PF00532_consen 49 IELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEGVP----SVYID-NYEAGYEATEYLI--K 115 (279)
T ss_dssp HHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCTSC----EEEEE-HHHHHHHHHHHHH--H
T ss_pred HHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCcccCC----EEEEc-chHHHHHHHHHHH--h
Confidence 99999999999999966665343333332 2 57889887777776 33 22333 1111223333333 3
Q ss_pred hccCCc-eEEEEe-------cCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCC--eEE
Q 011540 304 ESVENG-VGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH--MVI 368 (483)
Q Consensus 304 ~S~~~r-v~iVEv-------MGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~--~vI 368 (483)
.+| ++ |.++-. .-|..||..++...-- ..+-.+|.+..++.+ .-.+.+++.++.+.. +++
T Consensus 116 ~Gh-~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~ll~~~p~idai~ 185 (279)
T PF00532_consen 116 KGH-RRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAARELLESHPDIDAIF 185 (279)
T ss_dssp TTC-CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHHHHTSTT-SEEE
T ss_pred ccc-CCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHHHhhCCCCEEEE
Confidence 345 46 666654 3466688775544211 235556666666654 334555555665533 444
No 53
>PRK13054 lipid kinase; Reviewed
Probab=81.23 E-value=8.2 Score=39.22 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=55.0
Q ss_pred CccHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 219 ~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~-~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
..+..++++...+.+.|.++++|||||+..+. .|.+. ..+.++++..||.==-||+. .++|-..-.+.+.+
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~--- 113 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALK--- 113 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHH---
Confidence 34566777776677899999999999987754 33321 01335678889988888875 34554433333333
Q ss_pred HHHHhhhccCCceEEEEecCC
Q 011540 298 AAHVEVESVENGVGIVKLMGR 318 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR 318 (483)
.+. ....+.+-+.++-+|
T Consensus 114 ~i~---~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 114 LAI---EGRAQPIDLARVNDR 131 (300)
T ss_pred HHH---hCCceEEEEEEEcCc
Confidence 321 223345666666665
No 54
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.97 E-value=1.7 Score=44.20 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=36.3
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH--HHHHHHHHH
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAA 299 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~~~~i~~i 299 (483)
.+.|.++++|||||+-.|..+. ..++|++|||. | +.||-|.++ .+.++++++
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~-------G---~lGFl~~~~~~~~~~~l~~i 109 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM-------G---TLGFLTEVEPEETFFALSRL 109 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC-------C---CCCccccCCHHHHHHHHHHH
Confidence 4789999999999998766532 33688999984 2 568888755 233444444
No 55
>PRK13337 putative lipid kinase; Reviewed
Probab=80.85 E-value=5.3 Score=40.69 Aligned_cols=89 Identities=25% Similarity=0.277 Sum_probs=56.2
Q ss_pred CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHH-HHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 219 ~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~-L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
..+..++++.+.+.+.|.|+++|||||...+.. |.+ .+.++++..||.==-||+. +++|...-.+.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~----~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~--- 112 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE----KENRPKLGIIPVGTTNDFA---RALHVPRDIEKAAD--- 112 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh----CCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHH---
Confidence 345667777777778899999999999877653 332 2344678889987778875 34555433333333
Q ss_pred HHHHhhhccCCceEEEEecCCCc
Q 011540 298 AAHVEVESVENGVGIVKLMGRYS 320 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR~~ 320 (483)
.+. .+..+.+-+.++-+|+.
T Consensus 113 ~i~---~g~~~~vDlg~vn~~~f 132 (304)
T PRK13337 113 VII---EGHTVPVDIGKANNRYF 132 (304)
T ss_pred HHH---cCCeEEEEEEEECCEEE
Confidence 222 22234566777766654
No 56
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.82 E-value=1.5 Score=44.67 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH--HHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAA 299 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~~~~i~~i 299 (483)
+.|.+++||||||+-.|..... ..++||+||-. -++||-|..+ .+.+.+.++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999987665542 34688999942 3689988653 334444433
No 57
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.61 E-value=1.9 Score=44.46 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHH---HHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA---QRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~---~~~i~~i~~ 301 (483)
+.|.++++|||||+-.+..... +..+|++||.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 6899999999999877665432 34578999864 3478999976422 456665543
No 58
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.20 E-value=3.1 Score=42.71 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~ 300 (483)
+.|.++++|||||+..|..... +.+++++||- --++||-|.+ +.+.++++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 6899999999999987765542 3468899995 1368999863 45666666664
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=79.78 E-value=4.6 Score=41.84 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HHHHHHHHcCCceeEeeecccccCCccccCCcCChhh
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~-~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdT 287 (483)
.+.+++++.....+.|.|+++|||||+..+. .|.. .+..+++.-||.==-||+. +++|..+
T Consensus 46 ~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA---r~Lgi~~ 107 (334)
T PRK13055 46 NSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA---RALKIPR 107 (334)
T ss_pred ccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH---HHcCCCC
Confidence 4556677666677899999999999987654 3332 2334667889987788875 3555543
No 60
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=77.73 E-value=13 Score=40.72 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=61.1
Q ss_pred cEEEEEcccccccccCCeeccChhHHhchhccCc---ccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HH
Q 011540 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LI 252 (483)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GG---s~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~-~L 252 (483)
.+++-|.|=..|= ++-..+-++.+..+....| .+.-|.+. .+..++++.+...+.|.++++|||||+..+. -|
T Consensus 112 kr~lvIvNP~SGk--g~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGK--KSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCC--cchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 4677777877763 2222222334665555555 23434443 4556677777777899999999999987643 34
Q ss_pred HHHHH-HcCCceeEeeecccccCCccc
Q 011540 253 YKEVE-KRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 253 ~~~~~-~~g~~i~VvgIPkTIDNDi~g 278 (483)
.+.-. +.+.++++.-||.==-||+.-
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhh
Confidence 32100 014568899999988899853
No 61
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.08 E-value=3.7 Score=45.92 Aligned_cols=53 Identities=32% Similarity=0.460 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~ 300 (483)
++|.+++||||||+-.|..... ...+||+||-. -++||-|.+ +.+.++++++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSII 402 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHH
Confidence 6899999999999877665543 34688999953 479999975 44555665553
No 62
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=75.59 E-value=23 Score=36.34 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=54.5
Q ss_pred cCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC
Q 011540 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (483)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~ 219 (483)
.+.-+.||||||| -..+|+.++++.+- ..++..+++-+.==++| =. ..
T Consensus 10 lP~~p~~I~vITs-~~gAa~~D~~~~~~----~r~~~~~~~~~p~~vQG---------------------~~------A~ 57 (319)
T PF02601_consen 10 LPKFPKRIAVITS-PTGAAIQDFLRTLK----RRNPIVEIILYPASVQG---------------------EG------AA 57 (319)
T ss_pred CCCCCCEEEEEeC-CchHHHHHHHHHHH----HhCCCcEEEEEeccccc---------------------cc------hH
Confidence 3445669999998 44566666665554 34555555532211111 00 01
Q ss_pred ccHHHHHHHHHHc----CCcEEEEEcCCCchHHHHHHHHHHHHc---CCceeEe-eeccccc
Q 011540 220 HDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVA-GIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~----~Id~LvvIGGdgS~~~A~~L~~~~~~~---g~~i~Vv-gIPkTID 273 (483)
.++-+.++.+.+. ++|.++++=|-||...-..+-+|.-.+ ..++||| ||=-.+|
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D 119 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETD 119 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCC
Confidence 1223333444443 399999999999988765544332221 4455555 4443333
No 63
>PRK06186 hypothetical protein; Validated
Probab=75.48 E-value=5.2 Score=39.85 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCCc--hHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhcc
Q 011540 233 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 233 ~Id~LvvIGGdgS--~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~ 306 (483)
++|+++|.||+|. ..+.....+++++++ +|+.|| |+|++.|+=+.++-+-. ..+|.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~g-~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVLG-WADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhcC-CcCCCcC
Confidence 5799999999997 455566677776654 567777 99999876554443221 3456554
No 64
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=75.43 E-value=47 Score=34.32 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=87.8
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~~ 224 (483)
.||++..--.-|-....++++-..+.. ++. .+ +|.++.. .+...+
T Consensus 60 ~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~gy-~~--------------------------------~l~~~~~~~~~e~~ 105 (333)
T COG1609 60 TIGLVVPDITNPFFAEILKGIEEAARE-AGY-SL--------------------------------LLANTDDDPEKERE 105 (333)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EE--------------------------------EEECCCCCHHHHHH
Confidence 677776544447777778887777653 232 22 2444444 345678
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc-CCcc--ccCCcCChhhHHHHHHHHHHHHHH
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID-NDIA--VIDKSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID-NDi~--gtD~S~GfdTA~~~~~~~i~~i~~ 301 (483)
+.+.+...++|++|+.| ...... +.+.+.+.++ |+|.+=.+.+ .+++ ++|.--|...|++...
T Consensus 106 ~~~~l~~~~vdGiIi~~-~~~~~~---~~~~l~~~~~--P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~-------- 171 (333)
T COG1609 106 YLETLLQKRVDGLILLG-ERPNDS---LLELLAAAGI--PVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLI-------- 171 (333)
T ss_pred HHHHHHHcCCCEEEEec-CCCCHH---HHHHHHhcCC--CEEEEeCCCccCCCCEEEEChHHHHHHHHHHHH--------
Confidence 89999999999999999 222222 2233334454 4555544333 3332 2344444444443332
Q ss_pred hhhccCCceEEEEe-------cCCCcchHHHHHhhhcCCCc--EEecCCCCCCCCChhhHHHHHHHHHHhc
Q 011540 302 EVESVENGVGIVKL-------MGRYSGFISMYATLASRDVD--CCLIPESPFYLEGPGGLFEFIERQLKEN 363 (483)
Q Consensus 302 ~A~S~~~rv~iVEv-------MGR~~G~LA~~aaLA~~~ad--~vlIPE~~f~l~~~~~lle~I~~rl~~~ 363 (483)
..++ +++.++-. .-|..||..+.... +.. -.++.+..|+.+ .-.+.+.+-+...
T Consensus 172 -~~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~---~~~~~~~~i~~~~~~~~---~g~~~~~~ll~~~ 234 (333)
T COG1609 172 -ELGH-RRIAFIGGPLDSSASRERLEGYRAALREA---GLPINPEWIVEGDFSEE---SGYEAAERLLARG 234 (333)
T ss_pred -HCCC-ceEEEEeCCCccccHhHHHHHHHHHHHHC---CCCCCcceEEecCCChH---HHHHHHHHHHhcC
Confidence 2234 45665533 33456787755442 333 356666666554 3445555555443
No 65
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=75.40 E-value=5.6 Score=40.49 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=34.8
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
...+.++++|||||+-.+..... ...++|+||= --++||-|-.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin----------~G~lGFLt~~~ 97 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN----------LGHLGFLTDFE 97 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe----------CCCcccccccC
Confidence 67899999999999988877654 3448899983 22899998876
No 66
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.25 E-value=85 Score=30.16 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=55.2
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
.|||+...-..|-.+.+++++.+.+.+ ++ ..++- ..+........+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLI-------------------------------ANSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCChHHHHHH
Confidence 378888776778888889998887754 33 23321 0011112234577
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
++.+...++|++++.+++.... .+.+.+++.+ +|||.+=...+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 8889999999999998764322 2334444445 56776644443
No 67
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=73.57 E-value=1e+02 Score=30.87 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=53.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
..||++...-.-|-.+.++.++...+.. ++ ..++- .-+....+...+
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~ 111 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFL-------------------------------LQGGKDGEQLAQ 111 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHHH
Confidence 4799998776778888888888887753 33 22220 001112233457
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.++.|...++|++++.+.+.... .+.+.+++.+ +|+|.+
T Consensus 112 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 112 RFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKG--IPVVFA 150 (342)
T ss_pred HHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcC--CCEEEE
Confidence 77888899999999998765322 2233344445 456644
No 68
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.73 E-value=5 Score=40.82 Aligned_cols=51 Identities=27% Similarity=0.348 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~ 301 (483)
+.|.++++|||||+-.|.+.. ..||+||-. -++||-|.+ +.+.++++++..
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHc
Confidence 789999999999986654331 248899843 368998864 345566666654
No 69
>PLN02727 NAD kinase
Probab=71.52 E-value=3.4 Score=48.51 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH--HHHHHHHHHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~--~~~~~~i~~i~~ 301 (483)
++|.+|+||||||+-.|..+.. +..+||+||-. -++||-|-+ +.+.+.++.+..
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~ 798 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIH 798 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHc
Confidence 6899999999999988777653 34578999852 379999865 445666766653
No 70
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=71.50 E-value=13 Score=37.64 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=42.3
Q ss_pred ccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HHHHHHHHcCCceeEeeecccccCCcc
Q 011540 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (483)
Q Consensus 215 TsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~-~L~~~~~~~g~~i~VvgIPkTIDNDi~ 277 (483)
+.+...+..++++.+.+.+.|.++++|||||...+. -|.+. ..+.++++..||.==-||+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 334345667777777778899999999999987754 33321 11334578889988888874
No 71
>PRK13059 putative lipid kinase; Reviewed
Probab=70.53 E-value=12 Score=38.04 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=40.4
Q ss_pred HHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHH
Q 011540 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (483)
Q Consensus 228 ~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~ 294 (483)
...+.+.|.++++|||||...+. +.+.+.+.++++..||.==-||+. .++|...-...+.+
T Consensus 51 ~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~ 111 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACE 111 (295)
T ss_pred HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHH
Confidence 33456889999999999987654 222233556788899987788875 35565443444433
No 72
>PRK00861 putative lipid kinase; Reviewed
Probab=70.44 E-value=8.7 Score=38.91 Aligned_cols=68 Identities=26% Similarity=0.442 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHH
Q 011540 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (483)
Q Consensus 219 ~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~ 294 (483)
..+..++++...+.+.|.++++|||||+..+.. .+. +.++++..||.==-||.. .++|...-.+.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~--~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~ 110 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALI--GTDIPLGIIPRGTANAFA---AALGIPDTIEEACR 110 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHh--cCCCcEEEEcCCchhHHH---HHcCCCCCHHHHHH
Confidence 346677777777788999999999999877542 222 224678889987777775 45666554444433
No 73
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=70.11 E-value=9.2 Score=38.44 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHH-HHHHHHHcCCceeEee-ecccccCCccccCCcCChhhHHHHHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAG-IPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~-L~~~~~~~g~~i~Vvg-IPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~ 301 (483)
..++...+.+.|.++++|||||+..+.. |.+ .. +.+.+| ||.==-||+.- ++|... ...++++.+.
T Consensus 48 ~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a~---~l~i~~---~~~~~~~~l~- 115 (293)
T TIGR00147 48 RYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFAR---SLGIPE---DLDKAAKLVI- 115 (293)
T ss_pred HHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHHH---HcCCCC---CHHHHHHHHH-
Confidence 3444455568999999999999987553 432 11 233455 99877777752 333221 1223333332
Q ss_pred hhhccCCceEEEEecCCC
Q 011540 302 EVESVENGVGIVKLMGRY 319 (483)
Q Consensus 302 ~A~S~~~rv~iVEvMGR~ 319 (483)
.+..+.+-+.++-+|+
T Consensus 116 --~~~~~~~Dlg~v~~~~ 131 (293)
T TIGR00147 116 --AGDARAIDMGQVNKQY 131 (293)
T ss_pred --cCCceEEEEEEECCeE
Confidence 2222446666666665
No 74
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=69.45 E-value=8.5 Score=39.77 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH--cCCceeEeeeccccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--RGLQVAVAGIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~--~g~~i~VvgIPkTID 273 (483)
...+++++.+++.+.|.++-|||--++..|..++-...+ +.-.+++|.||-|--
T Consensus 65 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtag 120 (332)
T cd08180 65 EVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSG 120 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCc
Confidence 356789999999999999999999999999877543322 122478999998864
No 75
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=68.54 E-value=1.3e+02 Score=30.09 Aligned_cols=69 Identities=4% Similarity=0.089 Sum_probs=44.4
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
..||++...-..+=...+++++-+.+.. ++. +++-+. +........+
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~~-------------------------------~~~~~~~~~~ 106 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQ-KGY-TLILCN-------------------------------AWNNLEKQRA 106 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHH-CCC-EEEEEe-------------------------------CCCCHHHHHH
Confidence 4899998776777788888888777753 332 322100 0111122346
Q ss_pred HHHHHHHcCCcEEEEEcCCCch
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQ 246 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~ 246 (483)
.++.+...++|++++.+++...
T Consensus 107 ~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 107 YLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHcCCCEEEEecCCCCH
Confidence 6677888999999999876443
No 76
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=68.27 E-value=14 Score=38.00 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=63.2
Q ss_pred EEEEEcccccccccCCeeccChhHHhch-hccCccc--ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHH-HHHHH
Q 011540 178 EILGIEGGYRGFYSKNTLTLSPKVVNDI-HKRGGTI--LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG-AALIY 253 (483)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~v~~i-~~~GGs~--LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~-A~~L~ 253 (483)
++..|.|-..| +++ ..-.|..+... ...|.+. .=|... .+..++++.+...+.|.+++.|||||... ++-|+
T Consensus 4 ~~~~i~Np~sG--~~~-~~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 4 KALLIYNPTSG--KGK-AKKLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred eEEEEEccccc--ccc-hhhHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 45566666666 222 22334444433 3333321 111111 36788888888889999999999999874 44554
Q ss_pred HHHHHcCCceeEeeecccccCCccccCCcCChhh-HHHHHHHHHH
Q 011540 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAIN 297 (483)
Q Consensus 254 ~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdT-A~~~~~~~i~ 297 (483)
+ .+.+. +--||.==-||+. +++|... ....+.+.+.
T Consensus 80 ~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 80 G----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred c----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 3 33332 7778877777764 3566665 3555544443
No 77
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=68.00 E-value=9.5 Score=39.53 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g 278 (483)
+..+++++.+++.+.|.++-|||--.+..|..++.. + .+++|.||-|..+|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~---~--~~p~i~iPTT~~t~s~~ 118 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYK---L--GIPFISVPTAASHDGIA 118 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHh---c--CCCEEEecCcccCCccc
Confidence 457888999999999999999999999988888732 2 47799999998766543
No 78
>PRK13057 putative lipid kinase; Reviewed
Probab=67.85 E-value=8.9 Score=38.66 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=51.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
.+..++++. ...+.|.++++|||||+..+..- +. +.++++..||.==-||+. +++|...-.+.+. +.+
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~---l~--~~~~~lgiiP~GT~Ndfa---r~Lg~~~~~~~a~---~~i 105 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAAPA---LV--ETGLPLGILPLGTANDLA---RTLGIPLDLEAAA---RVI 105 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHHHH---Hh--cCCCcEEEECCCCccHHH---HHcCCCCCHHHHH---HHH
Confidence 345555555 35678999999999998876422 22 234778999987778874 2444443333333 333
Q ss_pred HHhhhccCCceEEEEecCCCc
Q 011540 300 HVEVESVENGVGIVKLMGRYS 320 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~ 320 (483)
. .++.+++-+.++-+|+.
T Consensus 106 ~---~~~~~~vD~g~~~~~~f 123 (287)
T PRK13057 106 A---TGQVRRIDLGWVNGHYF 123 (287)
T ss_pred H---cCCeEEeeEEEECCEEE
Confidence 2 22234566666655543
No 79
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=67.80 E-value=9.1 Score=39.79 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
++..++++.+++++.|.++-|||--.+..|..++-. ..+|+|.||-|--.+-
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTagTgs 115 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIASTDA 115 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 456788899999999999999999999999988753 2478999999865554
No 80
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=67.72 E-value=10 Score=39.64 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCceeEeeecccccCC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDND 275 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDND 275 (483)
+...++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|-..+
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 4578899999999999999999999999998876543110 1147899999987544
No 81
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=67.66 E-value=6.5 Score=41.08 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--------------CCceeEeeecccccCCcc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKTIDNDIA 277 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--------------g~~i~VvgIPkTIDNDi~ 277 (483)
.+.+++++.++++++|.++-|||--++..|..++-..... +-.+++|.||-|-.+--.
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE 136 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSE 136 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccccc
Confidence 4678999999999999999999999999999887665421 112799999988765433
No 82
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=67.18 E-value=8.5 Score=40.04 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt 279 (483)
+..+++++.+++.++|.++-|||--.+..|..++... .+|+|.||-|-..+-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccCcccc
Confidence 4578899999999999999999999999998887542 478999999976654333
No 83
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=67.17 E-value=1.4e+02 Score=29.70 Aligned_cols=68 Identities=7% Similarity=0.126 Sum_probs=43.6
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
..||++...-.-|-.+.++.++-..+.+ ++ .+++-.. +........+
T Consensus 57 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 103 (327)
T PRK10423 57 RTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVLCN-------------------------------TEGDEQRMNR 103 (327)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4789888655567788888888877753 33 2322000 1011122346
Q ss_pred HHHHHHHcCCcEEEEEcCCCc
Q 011540 225 IVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS 245 (483)
.++.|...++|++++.+.+..
T Consensus 104 ~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 104 NLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCcc
Confidence 777788899999999987654
No 84
>PRK12361 hypothetical protein; Provisional
Probab=66.88 E-value=15 Score=40.73 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~ 277 (483)
.+..++++...+.+.|.++++|||||...+..- +. +.++++-.||.==-||+.
T Consensus 284 ~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~---l~--~~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 284 ISAEALAKQARKAGADIVIACGGDGTVTEVASE---LV--NTDITLGIIPLGTANALS 336 (547)
T ss_pred ccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH---Hh--cCCCCEEEecCCchhHHH
Confidence 456677777777889999999999998775432 22 234678889987778875
No 85
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=64.34 E-value=12 Score=39.23 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+.|.++-|||--.+..|..++ + .++ +++|.||-|...|-
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~tds 125 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHDG 125 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCCc
Confidence 4578899999999999999999998888888776 2 234 67999999976543
No 86
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=63.63 E-value=7.3 Score=40.53 Aligned_cols=64 Identities=27% Similarity=0.439 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~ 289 (483)
+..+++++.+++.++ |.++-|||--.+..|..++... .+| +++|.||-|. +..+|.+.|--|++
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~---~a~vds~~~~k~~i 135 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL---LAQVDSSVGGKTGV 135 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH---HHHhhccCCCccee
Confidence 457889999999998 9999999998888887776422 235 6799999997 23334455444444
No 87
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=63.44 E-value=9.9 Score=39.80 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=46.4
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~ 289 (483)
+..+++++.+++.++ |.++-|||--.+..|..++-.. .++ +++|.||-|. +..+|.++|--+++
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~g--ip~i~IPTT~---~s~~ds~~~~k~~i 142 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MRG--IRFIQVPTTL---LAQVDSSVGGKTGI 142 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cCC--CCEEEcCchh---hhccccCcCCceec
Confidence 457888899999887 9999999999998888776421 234 6899999996 33345555544443
No 88
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=63.22 E-value=57 Score=35.34 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc---CCceeEe-eecccccC
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVA-GIPKTIDN 274 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~---g~~i~Vv-gIPkTIDN 274 (483)
++|.++++=|-||...-..+.+|.-.+ ..++||| ||=--+|.
T Consensus 187 ~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ 232 (432)
T TIGR00237 187 ECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDF 232 (432)
T ss_pred CCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCc
Confidence 389999999999998876654443222 5667666 44443443
No 89
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=63.11 E-value=1.6e+02 Score=28.92 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=49.5
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
+|||+...-.-|-...++.++...+.. ++. .+. +..+........+.
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~ 47 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE-LGA-EVI-------------------------------VQNANGDPAKQISQ 47 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH-cCC-EEE-------------------------------EECCCCCHHHHHHH
Confidence 367777655667777777777766643 332 222 01111112234567
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
++.+...++|++++.+.+.+. ...+.+++.+.+ +|||.+
T Consensus 48 i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE
Confidence 777888999999998866542 122334454445 567754
No 90
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=62.63 E-value=13 Score=38.45 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-.. .+++|.||-|-.++
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 3578899999999999999999999999998887432 47899999886544
No 91
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=62.44 E-value=12 Score=38.38 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-... + .+++|.||-|...+-
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tgs 118 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATGS 118 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchhh
Confidence 35678899999999999999999999999888776432 2 467999998876653
No 92
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=62.04 E-value=60 Score=34.93 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=59.9
Q ss_pred CCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc
Q 011540 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 141 ~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
+.-+.|||||||- ..+|+.++++. +..+++..+++-+.==. +| ..
T Consensus 132 P~~p~~I~viTs~-~gAa~~D~~~~----~~~r~p~~~~~~~~~~v---------------------QG---------~~ 176 (438)
T PRK00286 132 PFFPKRIGVITSP-TGAAIRDILTV----LRRRFPLVEVIIYPTLV---------------------QG---------EG 176 (438)
T ss_pred CCCCCEEEEEeCC-ccHHHHHHHHH----HHhcCCCCeEEEecCcC---------------------cC---------cc
Confidence 3446799999973 34445555544 44456655555222111 11 11
Q ss_pred cHHHHHHHHHH---cCCcEEEEEcCCCchHHHHHHHHHHHH---cCCceeEe-eecccccCCc--cccCCcCChhhHHH
Q 011540 221 DTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEK---RGLQVAVA-GIPKTIDNDI--AVIDKSFGFDTAVE 290 (483)
Q Consensus 221 d~~~i~~~l~~---~~Id~LvvIGGdgS~~~A~~L~~~~~~---~g~~i~Vv-gIPkTIDNDi--~gtD~S~GfdTA~~ 290 (483)
-...|++.|++ .++|.++++=|-||...-..+-+|.-. ...++||| ||=--+|.=| ..-|...-=.||+-
T Consensus 177 A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaa 255 (438)
T PRK00286 177 AAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFTIADFVADLRAPTPTAAA 255 (438)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccHHHHhhhccCCChHHHH
Confidence 12344444443 346999999999998876544333221 14556655 5554444433 12334444445443
No 93
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=61.76 E-value=17 Score=38.33 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC--------------CceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG--------------LQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g--------------~~i~VvgIPkTI 272 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.....+ -.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 70 ENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 35788999999999999999999999999987765432111 136899999986
No 94
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=61.60 E-value=1.1e+02 Score=31.17 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccccc-CCCcc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-RGGHD 221 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTs-R~~~d 221 (483)
+..+||++..+-..|--+.+++++.+.+.. ++ ..++ +.++ .....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 466999999888889999999999888853 33 2332 1111 11223
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
..+.++.+...++|++++.+.+.... ....+.+.+.+ +|||.+-..++
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~~ 117 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMIN 117 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCCC
Confidence 45678888899999999997653311 12223344445 66777754443
No 95
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=61.22 E-value=16 Score=38.59 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--------------CCceeEeeeccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKT 271 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--------------g~~i~VvgIPkT 271 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-.+... ...+|+|.||-|
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 3578899999999999999999999999988776543211 124789999976
No 96
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=60.70 E-value=15 Score=38.11 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
+..+++++.+++++. |.++-|||--.+..|..++... .++ +++|.||-|.
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 357788899999988 8999999999999888776422 234 6799999997
No 97
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=60.41 E-value=1.7e+02 Score=28.28 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=39.0
Q ss_pred eEEEEccCC--CCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 146 RACIVTCGG--LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 146 ~iaIvtsGG--~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
|||++...+ .-|-...++.++-+.+.+ ++. +++ +..+. ..+...
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~gy-~~~-------------------------------~~~~~-~~~~~~ 46 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LGV-EVK-------------------------------YVESV-EDADYE 46 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cCc-eEE-------------------------------EEecC-CHHHHH
Confidence 578777642 257777777777766643 221 222 11122 223345
Q ss_pred HHHHHHHHcCCcEEEEEcCC
Q 011540 224 KIVDNIEDRGINQVYIIGGD 243 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGd 243 (483)
+.++.|...++|++++.+.+
T Consensus 47 ~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 47 PNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHcCCCEEEECCcc
Confidence 67788889999999998755
No 98
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=59.57 E-value=17 Score=38.22 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTI 272 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.... ....+|+|.||-|-
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 457889999999999999999999999998877532110 12347899999874
No 99
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=59.54 E-value=2.2e+02 Score=31.02 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=95.4
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
++||.-+ ||-==.||+++.+.+... +.-| .++-|...|+.. ||- |.=++.|+...
T Consensus 16 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 70 (426)
T PRK15458 16 TNGIYAV---CSAHPLVLEAAIRYALAN--DSPL--------------LIEATSNQVDQF---GGY---TGMTPADFRGF 70 (426)
T ss_pred CceEEEe---cCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5677765 554457899988766532 2223 367888888776 775 65666666444
Q ss_pred -HHHHHHcCCcE-EEEEcCCC-------------chHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 226 -~~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
.+.-++.+++. .+++|||= +|..|..+.+...+.|++ -|++=.|++ ..+-...+.-+|-++
T Consensus 71 V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA~ 146 (426)
T PRK15458 71 VCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVAE 146 (426)
T ss_pred HHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHHH
Confidence 44456678998 99999983 577777777766667886 688888877 555556666799999
Q ss_pred HHHHHHHHHHHhhh---ccCCceEEE
Q 011540 291 EAQRAINAAHVEVE---SVENGVGIV 313 (483)
Q Consensus 291 ~~~~~i~~i~~~A~---S~~~rv~iV 313 (483)
.+++.|..+-..+. ....-+++|
T Consensus 147 Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 147 RAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886665542 333447777
No 100
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=59.18 E-value=19 Score=37.98 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH----------------cCCceeEeeeccccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK----------------RGLQVAVAGIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~----------------~g~~i~VvgIPkTID 273 (483)
+..+++++.+++.++|.++-|||--++..|..++-.... ....+|+|.||-|--
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtag 137 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSG 137 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCc
Confidence 457889999999999999999999999999887632110 012468999997753
No 101
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=59.05 E-value=12 Score=39.31 Aligned_cols=66 Identities=33% Similarity=0.472 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHcCC----cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 220 HDTNKIVDNIEDRGI----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I----d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
+..+++++.+.+.++ |.++-|||--.+..|..++-.. ++| +++|.||-|. +..+|-+.|.-++++.
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i~~ 140 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGVNF 140 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEEeC
Confidence 457888899999998 9999999998888887776432 234 6899999997 3445666666666553
No 102
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=58.80 E-value=80 Score=30.41 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=60.3
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------CCeeccChhHHhchhccCcccccccCC
Q 011540 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG 218 (483)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs~LGTsR~ 218 (483)
+++.+||+.+-.... +.++ .....++|+-.|..=|++ |++=-++++..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~--~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLW--KKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhh--ccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 356788888744433 2222 233478999999876654 344455566666565543334433332
Q ss_pred --CccHHHHHHHHHHcCCcEEEEEcCCCc
Q 011540 219 --GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 219 --~~d~~~i~~~l~~~~Id~LvvIGGdgS 245 (483)
.-|++++++.+.+++.+-++++|+.|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 237899999999999999999999996
No 103
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=57.61 E-value=19 Score=38.00 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc---------------CCceeEeeecccccC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR---------------GLQVAVAGIPKTIDN 274 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~---------------g~~i~VvgIPkTIDN 274 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-..... ...+|+|.||-|--.
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagT 142 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGT 142 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCch
Confidence 3567899999999999999999999999987765422111 124789999988543
No 104
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=57.43 E-value=1.1e+02 Score=30.11 Aligned_cols=85 Identities=16% Similarity=0.037 Sum_probs=49.4
Q ss_pred eEEEEccCCC-CcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 146 RACIVTCGGL-CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 146 ~iaIvtsGG~-apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
||+|++...+ ..|+...++.+++.+.+......++....+.......... ++..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQ-------------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcc-------------cceeeeecCCchhHHH
Confidence 6888887766 7899999999999987543333444433333222111100 1111111111234567
Q ss_pred HHHHHHHcCCcEEEEEcCC
Q 011540 225 IVDNIEDRGINQVYIIGGD 243 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGd 243 (483)
+.+.+++.+.|.+++.-..
T Consensus 68 ~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 68 AARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHhhcCCCEEEEeecc
Confidence 7788899999988875543
No 105
>PRK05670 anthranilate synthase component II; Provisional
Probab=56.66 E-value=22 Score=33.55 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
++.++.|+||+-||.|+...+....+.+++..-++||.|| |+|++--...
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla~a 88 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIGEA 88 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHHHH
Confidence 3556799999999999876543333333222234678887 9998755443
No 106
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=56.16 E-value=12 Score=41.16 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHH
Q 011540 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (483)
Q Consensus 221 d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~ 292 (483)
..+++++.|.++++ |.++.+||--....|-.++... .|| |+.|.||-|+ +..+|-|+|-=||+|..
T Consensus 222 ~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTl---la~vDssiggK~~vn~~ 290 (488)
T PRK13951 222 HVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTL---LAQVDASVGGKNAIDFA 290 (488)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccH---HHHHhcCCCCCeeeeCC
Confidence 47899999999999 9999999988887777665433 457 5699999998 46788999998998863
No 107
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=55.72 E-value=18 Score=37.66 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD 280 (483)
+...++++.+++.+.|.+|-|||--.+..|..++.. ..+|+|.||-|-..+-..+.
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgse~t~ 119 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCAASSN 119 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCccccc
Confidence 357888999999999999999999999999888743 24689999998766654443
No 108
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=55.65 E-value=23 Score=37.10 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH------------cCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------RGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~------------~g~~i~VvgIPkTI 272 (483)
+..+++++.+++.+.|.++-|||--++..|..++-.... ..-.+|+|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 457889999999999999999999999999876532110 12247899999885
No 109
>PRK05637 anthranilate synthase component II; Provisional
Probab=55.63 E-value=29 Score=33.71 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
+.+++.+.+++++-||-|+...+....+.+++..-++||.|| |+|++.-...
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577899999999999997775443334322225788888 9998876654
No 110
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=55.48 E-value=2.9e+02 Score=30.15 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.3
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
++||.-+ ||-==.||+++.+.+... +.-| .++-|...|+.. ||- |.=++.|+...
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 66 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARAS--GTPV--------------LIEATSNQVNQF---GGY---TGMTPADFRDF 66 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5677765 555557999988766532 2223 367788888776 775 65666665444
Q ss_pred -HHHHHHcCCcE-EEEEcCCC-------------chHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 226 -~~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
.+.-++.+++. .+++|||= +|..|..+.+...+.|++ -|++=.|++ ..+-..-+.-+|-++
T Consensus 67 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vAe 142 (420)
T TIGR02810 67 VETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVAE 142 (420)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 44456679998 99999983 566677776666667887 688888887 222234566689999
Q ss_pred HHHHHHHHHHHhhh---ccCCceEEE
Q 011540 291 EAQRAINAAHVEVE---SVENGVGIV 313 (483)
Q Consensus 291 ~~~~~i~~i~~~A~---S~~~rv~iV 313 (483)
.+++.|..+-..+. ..+.-+++|
T Consensus 143 Raa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 143 RAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886665554 333347777
No 111
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=55.45 E-value=2.2e+02 Score=28.16 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=49.3
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~~ 224 (483)
+||++...=.-|-...+++++-+.+.+ ++. ++. +++.+.. .....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g~-~v~-------------------------------~~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LGV-DAI-------------------------------YVGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hCC-eEE-------------------------------EECCCCCCHHHHHH
Confidence 467777555567788888888777753 332 332 0111111 223456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.++.+...++|++++.+.+.+ ....+.+.+++.+ +|||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~--iPvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAG--IKVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCC--CeEEEE
Confidence 677777889999999875532 2223334444445 556654
No 112
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=55.42 E-value=23 Score=39.15 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCchHHH--HHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhccC----
Q 011540 234 INQVYIIGGDGTQKGA--ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE---- 307 (483)
Q Consensus 234 Id~LvvIGGdgS~~~A--~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~---- 307 (483)
+|+++|-||+|.--.. -..+++++++ ++|..|| |+|++.|+=+.++-+-.+. .|.|+.
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn--~iP~lGI-------------ClGmQ~aviE~ARnv~Gl~-~AnS~Efdp~ 407 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYAREN--NIPFLGI-------------CLGMQLAVIEFARNVLGLE-GANSTEFDPD 407 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhc--CCCEEEE-------------chhHHHHHHHHHHHhcCCc-cCcccccCCC
Confidence 9999999999953322 3334555543 4667777 9999999977766544332 444442
Q ss_pred CceEEEEecCCCcc
Q 011540 308 NGVGIVKLMGRYSG 321 (483)
Q Consensus 308 ~rv~iVEvMGR~~G 321 (483)
...-||.+|....+
T Consensus 408 t~~pVv~l~~eq~~ 421 (533)
T COG0504 408 TKYPVVDLMPEQKD 421 (533)
T ss_pred CCCceEEecccccc
Confidence 11336666655443
No 113
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=55.41 E-value=21 Score=37.48 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
..+++++.+++.+.|.++-|||--.+..|..++-. ..+|+|.||-|--.|-
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTtagtgS 122 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIASTDA 122 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 56788999999999999999999999998888742 2478999998854443
No 114
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=55.35 E-value=27 Score=37.06 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (483)
...+++++.+++.++|.++-|||--++..|..++
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 65 ETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3578899999999999999999999999998776
No 115
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=55.35 E-value=23 Score=37.82 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTI 272 (483)
+..++.++.+++.+.|.++-|||--++..|..++-..... .-.+|+|.||-|-
T Consensus 93 ~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTta 158 (395)
T PRK15454 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTA 158 (395)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCC
Confidence 3467889999999999999999999999998775432111 1246899999764
No 116
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=55.18 E-value=21 Score=37.42 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-----------------cCCceeEeeeccccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-----------------RGLQVAVAGIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-----------------~g~~i~VvgIPkTID 273 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+|+|.||-|-.
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 134 (367)
T cd08182 64 EDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAG 134 (367)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCC
Confidence 356788999999999999999999999998887654211 113478999998864
No 117
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=54.87 E-value=23 Score=37.26 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTI 272 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.... ....+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 457889999999999999999999999998877653211 01247899999884
No 118
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=54.48 E-value=44 Score=31.33 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=53.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..+|.++ |+ .|+ ++..++..+...|++.++.|.++||-+..+. .+.++.|...+-.++=.+=+.+.-|
T Consensus 46 ~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 46 GLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcCCCEEEEECCCCHHH
Confidence 4577777 44 443 4555555666679999999999999874321 1246666666665543444434444
Q ss_pred HHHHHHH-HcCCcEEEEEcC
Q 011540 224 KIVDNIE-DRGINQVYIIGG 242 (483)
Q Consensus 224 ~i~~~l~-~~~Id~LvvIGG 242 (483)
..+..++ +.+-..++.+||
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHCCCCEEEEece
Confidence 4444433 345677788888
No 119
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=54.11 E-value=2e+02 Score=27.31 Aligned_cols=46 Identities=9% Similarity=0.151 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
..++.+.+..+++|++++...+.... .+.+.+.+.+ +|||.+=..+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~--ipvv~i~~~~ 90 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEAG--VPYVRIAPGT 90 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhcC--CCEEEEecCC
Confidence 45677778889999999998874322 2223344445 5566664333
No 120
>PLN02834 3-dehydroquinate synthase
Probab=54.11 E-value=15 Score=39.93 Aligned_cols=65 Identities=25% Similarity=0.371 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
+..+++++.+.++++| .++-|||--.+..|..++-.. .+| +++|.||-|. +..+|.+.|--++++
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl---lA~vDss~ggK~~i~ 214 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV---MAQVDSSVGGKTGVN 214 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC---CeEEecCCCceeEEe
Confidence 3567888999999998 999999998888887665322 234 6799999995 445566665555443
No 121
>PRK10586 putative oxidoreductase; Provisional
Probab=53.80 E-value=17 Score=38.37 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCCh
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGF 285 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~Gf 285 (483)
+.+++.+..+ .+.|.++-|||--++..|..++.. ..+|+|.||-|-.+|-+.+..+.-+
T Consensus 75 ~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~ 133 (362)
T PRK10586 75 DVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWY 133 (362)
T ss_pred HHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEE
Confidence 4455555544 588999999999999999988753 3578999999998887655544433
No 122
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=53.62 E-value=24 Score=33.30 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=39.6
Q ss_pred CccHHHHHHHHHH---cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 219 GHDTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 219 ~~d~~~i~~~l~~---~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.-|+..+++.++- .++|.++++-||+=+.- |.+.++++|..+-++|.|+.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 5678888887766 69999999999999975 55666678988888887653
No 123
>PRK15138 aldehyde reductase; Provisional
Probab=53.58 E-value=23 Score=37.60 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc----------------CCceeEeeeccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR----------------GLQVAVAGIPKT 271 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~----------------g~~i~VvgIPkT 271 (483)
+..+++++.+++.+.|.++-|||--++..|..++-..... .-.+|+|.||-|
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT 139 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL 139 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC
Confidence 4578899999999999999999999999998876432111 123689999986
No 124
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=53.22 E-value=9.5 Score=33.67 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcC-CcEEEEEcCCCchHHHHHHHHHHHHcCC--ceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 221 DTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 221 d~~~i~~~l~~~~-Id~LvvIGGdgS~~~A~~L~~~~~~~g~--~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
+.+.+....+..+ .+.++++|||||+..+.. .+.+... ++++..||.==-||+. +++|+.+-...
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~---~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVVN---GLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHHH---HHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHHH---HHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 3444444333334 489999999999876543 2222332 4689999987777775 36666665555
No 125
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=53.21 E-value=25 Score=33.42 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
+.+.+++.|+||+-||.|+......-.+.+++...++||.|| |+|++-.+..
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422111222222235788988 9998865544
No 126
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=52.38 E-value=29 Score=36.78 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccccC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDN 274 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTIDN 274 (483)
+..+++++.+++.+.|.++-|||--++..|..++-.... ....+|+|.||-|=-.
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagT 142 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGT 142 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcc
Confidence 357899999999999999999999999999887642111 0235789999987633
No 127
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=52.37 E-value=18 Score=37.98 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
+..+++++.+.+.+. |.++.|||--++..|..++-. -.+| ++.+.||.|.- ..+|.++|.-|++|.
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~-~~rg--i~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASI-YMRG--VSWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHH-HHcC--CCeEEecccHH---HhhhccccccceecC
Confidence 357889999999999 899999999888888777643 3356 46899999852 345667777777764
No 128
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.34 E-value=2.2e+02 Score=27.22 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=50.2
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHH
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~ 226 (483)
|||+...-..|-.+.+++++-..+.+ ++ .+++-+ -+....+...+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVLLC-------------------------------NTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHHHH
Confidence 67777666677778888888777653 33 233200 0111123345778
Q ss_pred HHHHHcCCcEEEEEcCCCchH-HHHHHHHHHHHcCCceeEeee
Q 011540 227 DNIEDRGINQVYIIGGDGTQK-GAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~-~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.|...++|++++.+..-... ......+.+.+++ +|||.+
T Consensus 49 ~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~--ipvV~i 89 (273)
T cd06292 49 EDLLARGVRGVVFISSLHADTHADHSHYERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCC--CCEEEE
Confidence 999999999999998543221 1112223344445 556665
No 129
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=52.05 E-value=22 Score=37.49 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA 288 (483)
+..+++++.+.+.++| .++-|||--.+..|..++-.. .++ +++|.||-|. +..+|-++|--++
T Consensus 68 ~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl---la~~da~i~~k~~ 133 (355)
T cd08197 68 STLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL---LAQSDSVLSLKQA 133 (355)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc---cccccccccCcee
Confidence 3578899999999999 999999988888877665422 234 6799999985 3345555554443
No 130
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.59 E-value=25 Score=37.09 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH------------------cCCceeEeeeccccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------------RGLQVAVAGIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~------------------~g~~i~VvgIPkTID 273 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|--
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 141 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAG 141 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCCh
Confidence 456788899999999999999999999998877643210 012478999998763
No 131
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.58 E-value=1.4e+02 Score=27.94 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=25.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccc
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYR 187 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~ 187 (483)
.+|.++ ||. |+ ++..+...+...|++.++.|.++||-
T Consensus 49 ~~ifll--G~~-~~---~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 49 KRIFLL--GGS-EE---VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CeEEEE--eCC-HH---HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 455554 444 43 44455556667799999999999976
No 132
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=51.30 E-value=2.2e+02 Score=27.01 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..+.++.|...++|++++++.+.+... .+.+++++ +|+|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 446677788889999999987644322 23344445 567665
No 133
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=50.85 E-value=2.3e+02 Score=27.12 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
..+.++.+...++|++++.+.+.+.. ....+++.+++ +|||.+-..+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPISDVNL--VPAVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCChHHh--HHHHHHHHHCC--CeEEEECCCC
Confidence 45678888889999998876553321 12234444555 6677664433
No 134
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=50.33 E-value=24 Score=37.54 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 222 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
.+++.+.+.+++.+ .++-|||-=....|..++-. ..+| +++|.||-| =+..+|.+.|--|++|.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 56889999999998 99999998888877766643 3345 779999999 23556777777777665
No 135
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=50.32 E-value=2.2e+02 Score=26.94 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=48.3
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHH
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~ 226 (483)
|||+...-..|-.+..+.++-+.+.. ++. ++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NGY-QML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CCC-EEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67777766777777788777776643 332 221 011111222334666
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.|...++|++++.+.+.+. .+.+.+++.+ +++|.+
T Consensus 49 ~~l~~~~~dgii~~~~~~~~----~~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 49 ELLARQKVDGIILLATTITD----EHREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCH----HHHHHHhcCC--CCEEEE
Confidence 77888999999999876442 2223344445 445554
No 136
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=50.17 E-value=31 Score=36.30 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccccCC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDND 275 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTIDND 275 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-.... ....+|+|.||-|--.+
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTg 140 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTA 140 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcch
Confidence 357889999999999999999999999998877632111 12357899999876433
No 137
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=49.96 E-value=30 Score=36.50 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHH--------Hc-------CCceeEeeeccccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE--------KR-------GLQVAVAGIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~--------~~-------g~~i~VvgIPkTID 273 (483)
+...++++.+++.++|.++-|||--++..|..++-... ++ .-.+++|.||-|--
T Consensus 74 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTag 142 (382)
T PRK10624 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAG 142 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCc
Confidence 35678889999999999999999999999876653211 10 12378999998853
No 138
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=49.89 E-value=42 Score=35.40 Aligned_cols=206 Identities=15% Similarity=0.222 Sum_probs=112.4
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC---eeccChhHHhchhccCcccccccCC
Q 011540 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRG 218 (483)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~v~~i~~~GGs~LGTsR~ 218 (483)
...+||.|+=+|| |.|++|..+++.-. .+-+.+.+.-..++|-... -+.+......++..-+--.+|-.-.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~~---~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEGV---EGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhhh---CceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 3567999999998 56667777665432 3358888888888886433 1111111111111000011111111
Q ss_pred CccHHHHHHHHHHcCCcEEEEEcCCC--chHH-HHHHHHHHHHcCC-ceeEeeecccccCCccccCCcCChh--hHHHHH
Q 011540 219 GHDTNKIVDNIEDRGINQVYIIGGDG--TQKG-AALIYKEVEKRGL-QVAVAGIPKTIDNDIAVIDKSFGFD--TAVEEA 292 (483)
Q Consensus 219 ~~d~~~i~~~l~~~~Id~LvvIGGdg--S~~~-A~~L~~~~~~~g~-~i~VvgIPkTIDNDi~gtD~S~Gfd--TA~~~~ 292 (483)
.++.++|.+.|+. .|.+|++=|.| |=++ |-.+++.++++|. -++|+..|- -|. .-.+.+
T Consensus 83 ee~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf-------------~~EG~~r~~~A 147 (338)
T COG0206 83 EESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPF-------------SFEGSPRMENA 147 (338)
T ss_pred HHHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecc-------------hhcCchHHHHH
Confidence 2456777777765 55777775544 3333 4567887777653 355555553 233 345566
Q ss_pred HHHHHHHHHhhhccC--CceEEEEecCCCcchHHHHHhh-------hcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc
Q 011540 293 QRAINAAHVEVESVE--NGVGIVKLMGRYSGFISMYATL-------ASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363 (483)
Q Consensus 293 ~~~i~~i~~~A~S~~--~rv~iVEvMGR~~G~LA~~aaL-------A~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~ 363 (483)
.+-|..++..+.+.- ...-++|......-|-|...+. .. =.|++-.| --.++ .++.++..++..
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~-i~e~I~~~-glinv-----DfaDv~~vm~~~ 220 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKG-ITELITKP-GLVNV-----DFADVRTVMKGG 220 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHH-HHHHhccC-ceEee-----cHHHHHHHHhcC
Confidence 677777777665531 1133566666444444443332 11 23444444 11222 345677778878
Q ss_pred CCeEEEEeCCCC
Q 011540 364 GHMVIVVAEGAG 375 (483)
Q Consensus 364 ~~~vIVvaEGa~ 375 (483)
|.+.+=+.+..+
T Consensus 221 G~A~mG~g~~~~ 232 (338)
T COG0206 221 GFALMGIGRASG 232 (338)
T ss_pred CceeEEEeeccc
Confidence 888887777764
No 139
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=49.56 E-value=28 Score=36.22 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++..++.+.|.++-|||--.+..|..++.. +.+|+|.||-|-..+-
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~gtgs 116 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIASNCA 116 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCccccCc
Confidence 346788888999999999999999999999888753 2468999998754443
No 140
>CHL00101 trpG anthranilate synthase component 2
Probab=49.20 E-value=32 Score=32.69 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=31.5
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
+.+.++|+|++.||.|+........+-++....++|+.|| |+|++--+.
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI-------------ClG~Qlla~ 87 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV-------------CLGHQSIGY 87 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE-------------chhHHHHHH
Confidence 4567899999999999876532111111112335778887 999875544
No 141
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=48.83 E-value=71 Score=28.59 Aligned_cols=87 Identities=23% Similarity=0.435 Sum_probs=52.3
Q ss_pred EEEEEccccccccc----------CCeeccChhHHhchhccCcccccccCC-CccHHHHHHHHHHcCCcEEEEEcCCCc-
Q 011540 178 EILGIEGGYRGFYS----------KNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYIIGGDGT- 245 (483)
Q Consensus 178 ~V~Gi~~G~~GL~~----------~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~~i~~~l~~~~Id~LvvIGGdgS- 245 (483)
-++++-.|..=+++ |++=-++++..+.+...|-.++-..-. .-|++++++.+.+++.+-++++|+.|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~GgR 97 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGGR 97 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence 45566666554433 345556666666666675556655411 237899999999999999999999995
Q ss_pred ----hHHHHHHHHHHHHcCCceeE
Q 011540 246 ----QKGAALIYKEVEKRGLQVAV 265 (483)
Q Consensus 246 ----~~~A~~L~~~~~~~g~~i~V 265 (483)
+.....|.++. +.+.++.+
T Consensus 98 ~DH~lanl~~l~~~~-~~~~~i~l 120 (123)
T PF04263_consen 98 FDHTLANLNLLYKYK-KRGIKIVL 120 (123)
T ss_dssp HHHHHHHHHHHHHHH-TTTSEEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCeEEE
Confidence 44444444433 44555433
No 142
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=48.61 E-value=47 Score=32.52 Aligned_cols=94 Identities=14% Similarity=0.291 Sum_probs=58.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccc------ccc--ccCCeeccCh--hHHhch----hccCc
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGY------RGF--YSKNTLTLSP--KVVNDI----HKRGG 210 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~------~GL--~~~~~~~L~~--~~v~~i----~~~GG 210 (483)
+||||+-.-|-+. ..+...+.. .+|+|.+|-.-- +|+ ++.++.+++. +++.+. ...|+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~~--RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEALK--RGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHHh--CCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5899998656543 344555543 578999987543 343 3456777776 555442 12222
Q ss_pred ccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHH
Q 011540 211 TILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (483)
Q Consensus 211 s~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~ 248 (483)
.. +.-. ....+.+++.|+.-+..-|+|+||-||+.-
T Consensus 73 ~~--~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 73 GA--SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred CC--CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 11 0000 112466788899889999999999999853
No 143
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=48.43 E-value=65 Score=32.47 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=49.9
Q ss_pred eccChhHHhchhccCcccccccCC-CccHHHHHHHHHHcCCcEEEEE----cCCCchHHHHHHHHHHHHcCCceeE
Q 011540 195 LTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYII----GGDGTQKGAALIYKEVEKRGLQVAV 265 (483)
Q Consensus 195 ~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~~i~~~l~~~~Id~LvvI----GGdgS~~~A~~L~~~~~~~g~~i~V 265 (483)
++++++++-......|.+-.||-- ..++.++.+.+.+.+-|.+++| |=-||+.+|...++.+ .+.++.|
T Consensus 40 ~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V 113 (280)
T PF02645_consen 40 VDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV 113 (280)
T ss_dssp TTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE
T ss_pred CCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE
Confidence 488999888887677777777664 4578888888888999988877 5678888888888776 2444444
No 144
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=47.70 E-value=2.6e+02 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..+.++.+...++|++++...+. .....+.+.+.+ + +|||.+
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~~--~~~~~~l~~~~~-~--ipvV~~ 85 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPIDP--KAVIPALNKAAA-G--IKLITT 85 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCCh--hHhHHHHHHHhc-C--CCEEEe
Confidence 45677888899999999997652 222233333333 4 667765
No 145
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=47.39 E-value=37 Score=35.61 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-----------------CCceeEeeecccccC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-----------------GLQVAVAGIPKTIDN 274 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-----------------g~~i~VvgIPkTIDN 274 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|--.
T Consensus 68 ~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagt 139 (370)
T cd08192 68 AAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGT 139 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCch
Confidence 3578889999999999999999999999988776543210 113789999988643
No 146
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=47.28 E-value=41 Score=35.31 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHc---CCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCceeEeeecccccCC
Q 011540 220 HDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDND 275 (483)
Q Consensus 220 ~d~~~i~~~l~~~---~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDND 275 (483)
++.+++++.+++. ++|.++-|||--++..|..++-..... .-.+++|.||-|=-.+
T Consensus 65 ~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTG 136 (347)
T cd08184 65 DQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTG 136 (347)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccc
Confidence 3467888888888 999999999999999998876433211 1136799999875333
No 147
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=47.27 E-value=2.6e+02 Score=26.54 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=66.0
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
.||++...-..|-.+..+.++.+.+.+ ++. .++-+. +.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~~-------------------------------~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AGY-STIIGN-------------------------------SDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cCC-EEEEEe-------------------------------CCCCHHHHHHH
Confidence 367777666678888888888877753 332 333110 11111234567
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc-CCcCChhhHHHHHHHHHHHHHHhhh
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVEVE 304 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt-D~S~GfdTA~~~~~~~i~~i~~~A~ 304 (483)
++.+...++|++++.+.+.... . .+.+++.+ +|+|.+ |++.+.. -.+++.|-. .....+++.+.. .
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~--~ 114 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRG--IPVVFV----DREITGSPIPFVTSDPQ-PGMTEAVSLLVA--L 114 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCC--CCEEEE----ecccCCCCCCEEEECcH-HHHHHHHHHHHH--c
Confidence 8889999999999998765432 2 34455555 456643 4444221 124454432 122333444432 2
Q ss_pred ccCCceEEE
Q 011540 305 SVENGVGIV 313 (483)
Q Consensus 305 S~~~rv~iV 313 (483)
++ ++|.++
T Consensus 115 g~-~~I~~i 122 (265)
T cd06299 115 GH-KKIGYI 122 (265)
T ss_pred CC-CcEEEE
Confidence 44 457666
No 148
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=46.68 E-value=1.6e+02 Score=24.21 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=48.1
Q ss_pred EEEccCCCCc-chhHHHHHHHHHHHHhCCCcEE-EEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 148 CIVTCGGLCP-GINTVIREIVCGLSYMYGVDEI-LGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 148 aIvtsGG~ap-GmNavIr~iv~~~~~~~~~~~V-~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
-++.-|.+-| ..|..++.+.+.+.+..+...+ +|+... ..++++++
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3455678887 8999999999888654432222 222221 34678888
Q ss_pred HHHHHHcCCcEEEEE-----cCCCch-HHHHHHHHHH
Q 011540 226 VDNIEDRGINQVYII-----GGDGTQ-KGAALIYKEV 256 (483)
Q Consensus 226 ~~~l~~~~Id~LvvI-----GGdgS~-~~A~~L~~~~ 256 (483)
++.|++.|++-++++ -|..+. .-...+.+..
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVR 87 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHH
Confidence 999998898887764 355554 3333444433
No 149
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=46.60 E-value=34 Score=36.01 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHH----------Hc-------CCceeEeeeccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE----------KR-------GLQVAVAGIPKT 271 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~----------~~-------g~~i~VvgIPkT 271 (483)
+...++++.+++.+.|.++-|||--.+..|..++-... .. .-.+++|.||-|
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 35778889999999999999999999999887754321 00 124789999987
No 150
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.40 E-value=2.7e+02 Score=26.52 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..+.++.+...++|++++.+.+.... ....+++.+++ +|||.+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~--~~~l~~~~~~~--iPvV~~ 87 (275)
T cd06317 45 QAAQVEDLIAQKVDGIILWPTDGQAY--IPGLRKAKQAG--IPVVIT 87 (275)
T ss_pred HHHHHHHHHHcCCCEEEEecCCcccc--HHHHHHHHHCC--CcEEEe
Confidence 34566777788999999988664321 11223344445 556643
No 151
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=45.66 E-value=88 Score=31.50 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=60.9
Q ss_pred CcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC---CccHHHHHHHHHHc
Q 011540 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (483)
Q Consensus 156 apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~ 232 (483)
+|....-.+.+++++.+..+..++.-+...+. +. ..+.....+.+...|+.+.+..+. ..|+...+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444445556666544344456655543332 11 111112223344567777766553 45788999999999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEee
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 267 (483)
+-|++++.|..+ .+..+.+.+++.|++.++++
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVA 221 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEc
Confidence 999988877433 34446677777888877664
No 152
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=45.22 E-value=39 Score=35.65 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccccCC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDND 275 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTIDND 275 (483)
+..+++++.++..+.|.++-|||--.+..|..++-.... ....+|+|.||-|--.+
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG 141 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATG 141 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchh
Confidence 457788899999999999999999999888876542211 01347899999886443
No 153
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=45.16 E-value=20 Score=31.64 Aligned_cols=42 Identities=36% Similarity=0.494 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCc---eeEeeecccccCCcc
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIPKTIDNDIA 277 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~---i~VvgIPkTIDNDi~ 277 (483)
..+.++++|||||...+.. .+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999887643 22222222 678999987788884
No 154
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=44.76 E-value=3.3e+02 Score=27.07 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=46.9
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~ 223 (483)
..||++...-..|=.+.++.++-+.+.. ++ .+++ +-++.. .....
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~-~g-~~~~--------------------------------i~~~~~~~~~~~ 105 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATM-YK-YNII--------------------------------LSNSDEDPEKEV 105 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHHH
Confidence 4799988554556667777777666643 22 1222 001111 12234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
++++.|...++|++++.+...+.. +.+.+.+.+ +|+|.+
T Consensus 106 ~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 144 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFMGGTITEK----LREEFSRSP--VPVVLA 144 (329)
T ss_pred HHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhcC--CCEEEE
Confidence 566778889999999987543321 223334445 556654
No 155
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=44.42 E-value=60 Score=28.66 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=45.6
Q ss_pred cChhHHhchhccCcccccccC---C-Cc-cHHHHHHHHHHcCCcEEEEEcC-CCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 197 LSPKVVNDIHKRGGTILRTSR---G-GH-DTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 197 L~~~~v~~i~~~GGs~LGTsR---~-~~-d~~~i~~~l~~~~Id~LvvIGG-dgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
+...++..|...|--+|-|.- . .+ ...+.++.|.+.++-+|.+--| +-. .--..+.+++.+++ +|++.+|.
T Consensus 31 ~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 31 MEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred eecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcC--CCEEEeCC
Confidence 334467788554444443322 2 22 3788899999999999999555 333 33345556666666 56999997
No 156
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=44.38 E-value=41 Score=31.72 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=35.9
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
.+--|+++.+.+++++.++++++.++.+.|-...-. -.++- ....||||||-..
T Consensus 33 ~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 33 VSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred ECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCc
Confidence 334477778899999999999987777666533222 11221 3468899999743
No 157
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=44.11 E-value=37 Score=26.24 Aligned_cols=50 Identities=8% Similarity=0.251 Sum_probs=36.3
Q ss_pred ccccCCCccHHHHHHHHHHcCCcE------------EEEEcCCCchHHHHHHHHHHH-HcCCc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQ------------VYIIGGDGTQKGAALIYKEVE-KRGLQ 262 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~------------LvvIGGdgS~~~A~~L~~~~~-~~g~~ 262 (483)
+|+-+...+.++.++.|++.+++. -+.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 566666677888899999998884 678899999999988888887 45554
No 158
>PLN02335 anthranilate synthase
Probab=43.90 E-value=38 Score=33.19 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=33.5
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA 288 (483)
+..++.|++++-||-++-.......+.+++.+-++||.|| |+||+--
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~QlL 104 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQCI 104 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHHH
Confidence 4557899999999999876543333444444556788888 9999843
No 159
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=43.55 E-value=2.6e+02 Score=25.53 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=67.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC---ccccCCcCChhhHHHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND---IAVIDKSFGFDTAVEEAQRAI 296 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND---i~gtD~S~GfdTA~~~~~~~i 296 (483)
.+..++++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+.+.+++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 35667777788889999988877655432 334444444 6677764444321 111223444455555555544
Q ss_pred HHHHHhhhccCCceEEEEecCCCcchHHHH----HhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc-C-CeEEEE
Q 011540 297 NAAHVEVESVENGVGIVKLMGRYSGFISMY----ATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-G-HMVIVV 370 (483)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~----aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~-~-~~vIVv 370 (483)
.... .+++.++=.-.. ....... .++...+.....+.+.+.+.+ ...+.+.+.++++ + .++++.
T Consensus 120 ~~~~------~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~i~~~ 189 (269)
T cd01391 120 AEKG------WKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVVAIEYGDLDTE---KGFQALLQLLKAAPKPDAIFAC 189 (269)
T ss_pred HHhC------CceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEEeccccCCCcc---ccHHHHHHHHhcCCCCCEEEEc
Confidence 3332 345777643331 2222222 233332333333333333221 3455666666654 2 445554
Q ss_pred eC
Q 011540 371 AE 372 (483)
Q Consensus 371 aE 372 (483)
+.
T Consensus 190 ~~ 191 (269)
T cd01391 190 ND 191 (269)
T ss_pred Cc
Confidence 43
No 160
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=43.25 E-value=48 Score=35.50 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTI 272 (483)
..++.++.+++.+.|.+|-+||--++..|..++-.... ..-+.++|.||-|=
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCC
Confidence 46788899999999999999999999998876543321 11226788888764
No 161
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=43.20 E-value=61 Score=30.63 Aligned_cols=49 Identities=27% Similarity=0.423 Sum_probs=24.5
Q ss_pred cCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 216 SRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 216 sR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
-|+++.+.+.+++-++.+++.+ |.|-|- |..|--.... .-.+||+|||-
T Consensus 40 HRTPe~m~~ya~~a~~~g~~vi--IAgAGg---AAHLPGmvAa-~T~lPViGVPv 88 (162)
T COG0041 40 HRTPEKMFEYAEEAEERGVKVI--IAGAGG---AAHLPGMVAA-KTPLPVIGVPV 88 (162)
T ss_pred cCCHHHHHHHHHHHHHCCCeEE--EecCcc---hhhcchhhhh-cCCCCeEeccC
Confidence 3455555666666666666543 333332 2222211111 23578999984
No 162
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=42.31 E-value=1.3e+02 Score=30.51 Aligned_cols=93 Identities=23% Similarity=0.338 Sum_probs=55.7
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCC---cEEecCCCCCCCCChhhHHHHHHHHHHhc-C-CeEEEEeCCCCchhhhc
Q 011540 307 ENGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN-G-HMVIVVAEGAGQEFVAQ 381 (483)
Q Consensus 307 ~~rv~iVEvMGR~~G~LA~~aaLA~~~a---d~vlIPE~~f~l~~~~~lle~I~~rl~~~-~-~~vIVvaEGa~~~~~~~ 381 (483)
++.+.++|+ ..||+.+.|++-...+ .++|+|+.|. .-.+.|++++++. | +.-|+++.-.+..+-.-
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G 158 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDTNGRPFREG 158 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECCCCCccccC
Confidence 356888887 5789988888764433 3788998873 5678888888764 3 44466665543222100
Q ss_pred ---------cCC----ccccccccCCccchhHHHHHHHHHH
Q 011540 382 ---------SMP----AVDEKDASGNRLLLDIGLWLTQKIK 409 (483)
Q Consensus 382 ---------~~~----~~~~~D~~Gn~~l~~ig~~La~~I~ 409 (483)
-+. ....+|.+|+.+-.. -..++++|.
T Consensus 159 ~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T-~~avaDelA 198 (243)
T TIGR01916 159 QVGVAIGAAGLKVLRDWRGEKDLYGRELEVT-EVAVADELA 198 (243)
T ss_pred CCCeeeeccCChHHHhcCCCcCCCCCeeecc-HHHHHHHHH
Confidence 000 134679999876432 134555554
No 163
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=42.22 E-value=51 Score=34.52 Aligned_cols=53 Identities=13% Similarity=0.237 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHcC--CcEEEEEcCCCchHHHHHHHHHHHHc-----------------CCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEKR-----------------GLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~--Id~LvvIGGdgS~~~A~~L~~~~~~~-----------------g~~i~VvgIPkTI 272 (483)
+..+++++.+++.+ .|.++-|||--.+..|..++-..... .-.+|+|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 136 (355)
T TIGR03405 65 AQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTA 136 (355)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCC
Confidence 34678888888877 99999999999999887765431110 1247899999774
No 164
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=42.06 E-value=59 Score=34.28 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------CC------ceeEeeecccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------GL------QVAVAGIPKTI 272 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------g~------~i~VvgIPkTI 272 (483)
...++++.+++.+.|.++-|||--.+..|..++-..... +. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 467778889999999999999999999987665322111 11 36899999986
No 165
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=41.87 E-value=86 Score=31.43 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=48.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..++.++ ||. |+ ++..+++.+...| +.++.|.++||-. .+ -....++.|...+-.+|=.+=+.+.-|
T Consensus 105 ~~~v~ll--G~~-~~---v~~~a~~~l~~~y-~l~i~g~~~Gyf~---~~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGK-PE---VLAQTEAKLRTQW-NVNIVGSQDGYFT---PE---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCC-HH---HHHHHHHHHHHHh-CCEEEEEeCCCCC---HH---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 3566666 554 44 4555555555568 6799999999853 11 112346677777666543333333333
Q ss_pred HHHH-HHHHcCCcEEEEEcC
Q 011540 224 KIVD-NIEDRGINQVYIIGG 242 (483)
Q Consensus 224 ~i~~-~l~~~~Id~LvvIGG 242 (483)
..+. +.+..+...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 3333 344446666777787
No 166
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=41.80 E-value=43 Score=34.68 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
..+++++.+++ +.|.++-|||--.+..|..++ +. ++ +++|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 46677888888 999999999998898888777 22 34 6799999998664
No 167
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=41.43 E-value=51 Score=34.86 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCceeEeeeccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKT 271 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkT 271 (483)
+..+.++.+++.+.|.++-|||--.+..|..++-..... +-.+++|.||-|
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 456677888899999999999999999998876533210 115789999988
No 168
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=39.91 E-value=1.8e+02 Score=32.88 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=63.8
Q ss_pred HHHHHHHH--cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHH
Q 011540 224 KIVDNIED--RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 224 ~i~~~l~~--~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~ 301 (483)
+++..++. +-||+++|-+|--++.-|..|-+++-..|++ -|+.=|.||| .|+..-.
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe---------------------qI~svi~ 169 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE---------------------QIRSVIR 169 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH---------------------HHHHHHH
Confidence 44444444 5699999999999999999999998777765 3555666654 2222222
Q ss_pred hhhccCCceEEEEecCCCcc-h----------HHHHHhhhcCCCcEEecCC
Q 011540 302 EVESVENGVGIVKLMGRYSG-F----------ISMYATLASRDVDCCLIPE 341 (483)
Q Consensus 302 ~A~S~~~rv~iVEvMGR~~G-~----------LA~~aaLA~~~ad~vlIPE 341 (483)
-|..+++-=-|+..-|+.+| | ||+++.|-+ .+|++++--
T Consensus 170 IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~vG 219 (717)
T COG4981 170 IAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCVG 219 (717)
T ss_pred HHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEec
Confidence 34444444446666665554 3 899999998 688877643
No 169
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=39.74 E-value=53 Score=35.23 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH--------------cC-----CceeEeeeccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--------------RG-----LQVAVAGIPKT 271 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~--------------~g-----~~i~VvgIPkT 271 (483)
+...++++.+++.++|.++-|||--.+..|..++-.... ++ -.+++|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 137 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTT 137 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCC
Confidence 457888999999999999999999999998776522110 11 12689999998
No 170
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=39.73 E-value=63 Score=33.33 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHc-CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc
Q 011540 220 HDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279 (483)
Q Consensus 220 ~d~~~i~~~l~~~-~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt 279 (483)
...+++.+.+++. +.|.++-|||--.+..|..++.. ++ +++|.||-|..+|-..+
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~~--~p~i~vPTt~~tgs~~s 116 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---RG--IPLSVPTTNLNDDGIAS 116 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---cC--CCEEEecCccccCcccc
Confidence 4567777777776 59999999999999988888752 34 67999999988865443
No 171
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=39.72 E-value=80 Score=31.91 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=55.4
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCC---cEEecCCCCCCCCChhhHHHHHHHHHHhc-C-CeEEEEeCCCCchhhh--
Q 011540 308 NGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN-G-HMVIVVAEGAGQEFVA-- 380 (483)
Q Consensus 308 ~rv~iVEvMGR~~G~LA~~aaLA~~~a---d~vlIPE~~f~l~~~~~lle~I~~rl~~~-~-~~vIVvaEGa~~~~~~-- 380 (483)
+++.++|+ ..||+.+.|++-...+ .++|+||.|- +-.+.|++++++. | +.-|+++.-.+..+-.
T Consensus 90 ~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~ 160 (245)
T PRK13293 90 APFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITDTNGRPFRKGQ 160 (245)
T ss_pred CCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCC
Confidence 45677776 6799988888764433 2789999883 4567788877664 3 4446776654322210
Q ss_pred -------ccC----CccccccccCCccchhHHHHHHHHHH
Q 011540 381 -------QSM----PAVDEKDASGNRLLLDIGLWLTQKIK 409 (483)
Q Consensus 381 -------~~~----~~~~~~D~~Gn~~l~~ig~~La~~I~ 409 (483)
.-+ ....++|.+||.+-.. -..++++|.
T Consensus 161 t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT-~~avaDelA 199 (245)
T PRK13293 161 RGVAIGVAGIPALWDWRGEKDLFGRELETT-EVAVADELA 199 (245)
T ss_pred cceeeeccCchHHHhhcCCcCCCCCeeech-HHHHHHHHH
Confidence 000 1134679999976432 234556654
No 172
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=39.62 E-value=40 Score=35.84 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC
Q 011540 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (483)
Q Consensus 219 ~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD 280 (483)
.++.+++...+.+.+.|.++=|||--+...|..++.. +++|+|.||-+=++|=+.+.
T Consensus 70 ~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 70 EEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAITSP 126 (360)
T ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCccccccccCC
Confidence 3567888888888899999999999999999988753 45789999999999975544
No 173
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=39.22 E-value=4.3e+02 Score=26.81 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=53.3
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCcc
Q 011540 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (483)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d 221 (483)
.++.+||++...-.-|-.+.++.++.+.+.. +++..++ +.++....+
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 3456788887655677888888888777753 3221222 112222222
Q ss_pred -HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 222 -TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 222 -~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
..+.++.|...++|++++.+.+..... ..+ +.+++.+ ||||.+=
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd 113 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFN 113 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEc
Confidence 235677889999999999987753322 223 3444455 4566553
No 174
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=38.82 E-value=1e+02 Score=27.37 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=52.0
Q ss_pred ccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--CC
Q 011540 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GL 261 (483)
Q Consensus 184 ~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~ 261 (483)
.|..||+-.+|.-++|++..++.. .+|.+++++.++++.=++++ ||--=....+..|-+.+.++ +.
T Consensus 26 ~GITGFyl~eYkGmSP~~wkgf~l-----------~EDpe~ai~~I~d~s~~aV~-I~TVV~~~~~~~i~~~i~ekL~~e 93 (110)
T PF10126_consen 26 GGITGFYLHEYKGMSPQDWKGFLL-----------DEDPEMAIKAINDLSENAVL-IGTVVDEEKVEKIEKLIKEKLKNE 93 (110)
T ss_pred cCccEEEeEeecCCChHHhcCccc-----------ccCHHHHHHHHHHhccCcEE-EEEEECHHHHHHHHHHHHHHhcCC
Confidence 467788877888888877766532 38899999999999888765 44444455666666665554 55
Q ss_pred ceeEeeecc
Q 011540 262 QVAVAGIPK 270 (483)
Q Consensus 262 ~i~VvgIPk 270 (483)
+-.++.+|-
T Consensus 94 ryTii~iPi 102 (110)
T PF10126_consen 94 RYTIIEIPI 102 (110)
T ss_pred ceEEEEeeE
Confidence 556777774
No 175
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=38.81 E-value=3.6e+02 Score=25.90 Aligned_cols=41 Identities=7% Similarity=0.008 Sum_probs=25.1
Q ss_pred HHHHHH-HHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVD-NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~-~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..+.+. .+..+++|++++.+.+-... ..+.+++.+. |||.+
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~i--Pvv~~ 84 (269)
T cd06297 43 LKRYLESTTLAYLTDGLLLASYDLTER----LAERRLPTER--PVVLV 84 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEecCccChH----HHHHHhhcCC--CEEEE
Confidence 344554 58889999999998764422 2344444564 45544
No 176
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=38.58 E-value=29 Score=36.55 Aligned_cols=68 Identities=25% Similarity=0.272 Sum_probs=44.6
Q ss_pred eccChhHHhchhccCcccccccCCC----c-cHHHHHHHHHHcCC-----------------cEEEEEcCCCchHHHHH-
Q 011540 195 LTLSPKVVNDIHKRGGTILRTSRGG----H-DTNKIVDNIEDRGI-----------------NQVYIIGGDGTQKGAAL- 251 (483)
Q Consensus 195 ~~L~~~~v~~i~~~GGs~LGTsR~~----~-d~~~i~~~l~~~~I-----------------d~LvvIGGdgS~~~A~~- 251 (483)
-.|+++.+..+...-||-.|---.. . -...+++.|.+-+| |++|-+||||||-.|.-
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasr 124 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASR 124 (395)
T ss_pred cCCCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhh
Confidence 4688888888877767644321111 1 24566666766665 78999999999876543
Q ss_pred HHHHHHHcCCceeEeee
Q 011540 252 IYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 252 L~~~~~~~g~~i~VvgI 268 (483)
+.+ -..|||||
T Consensus 125 v~~------~~~PViGv 135 (395)
T KOG4180|consen 125 VID------DSKPVIGV 135 (395)
T ss_pred hhc------cCCceeee
Confidence 432 24789998
No 177
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.50 E-value=1.9e+02 Score=26.19 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=66.5
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhH-HhchhccCcccccccC----C
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV-VNDIHKRGGTILRTSR----G 218 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~-v~~i~~~GGs~LGTsR----~ 218 (483)
+.||.+.+.||+.=.+..-+-+.. .+..| .+|+ |-| ..++.++ ++......-.+++-|- .
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~---lr~~G-~eVi-----~LG------~~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA---LTEAG-FEVI-----NLG------VMTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH---HHHCC-CEEE-----ECC------CCCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 347777888888765555443332 22233 4555 222 1233333 3333333334444332 1
Q ss_pred CccHHHHHHHHHHcCC-cEEEEEcCCCchHH--HHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHH
Q 011540 219 GHDTNKIVDNIEDRGI-NQVYIIGGDGTQKG--AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (483)
Q Consensus 219 ~~d~~~i~~~l~~~~I-d~LvvIGGdgS~~~--A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~ 295 (483)
.....++++.|++.+. +..+++||.-+... .....+.+++.|+ |..|+-+|-.+.++..
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~------------------~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF------------------DRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC------------------CEEECcCCCHHHHHHH
Confidence 2467888899999877 66789999764321 3334455666564 3344555556666555
Q ss_pred HHHH
Q 011540 296 INAA 299 (483)
Q Consensus 296 i~~i 299 (483)
++..
T Consensus 130 l~~~ 133 (137)
T PRK02261 130 LKKD 133 (137)
T ss_pred HHHH
Confidence 5543
No 178
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=38.25 E-value=43 Score=34.78 Aligned_cols=47 Identities=6% Similarity=0.233 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
..+++++.+++ +.|.++-|||--.+..|..++.. + .+|+|.||-|-.
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTTag 115 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTAPS 115 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCccc
Confidence 45677777777 99999999999999998888732 2 367999999943
No 179
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.10 E-value=2.5e+02 Score=27.35 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=44.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
+||++...-..|.....+.++...+.. ++ ..++ + .-++.......++
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~---------~----------------------~~~~~~~~~~~~~ 48 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLR---------I----------------------LDGRGSEAGQAAA 48 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEE---------E----------------------ECCCCCHHHHHHH
Confidence 688888777778888888888887753 33 2222 0 0011112234578
Q ss_pred HHHHHHcCCcEEEEEcCCC
Q 011540 226 VDNIEDRGINQVYIIGGDG 244 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdg 244 (483)
++.+..+++|++++.+.+.
T Consensus 49 i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHcCCCEEEEcCCCH
Confidence 8889999999999998653
No 180
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=38.07 E-value=5.7e+02 Score=27.95 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=92.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
.+||--+ ||-==.||+++.+.+... +.-| .++-|...|+.. ||- |.=++.|+...
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~--~~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS--TRKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc--CCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4566665 554457899987766532 2223 367788888776 775 65666665444
Q ss_pred -HHHHHHcCCcE-EEEEcCCC-------------chHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 226 -~~~l~~~~Id~-LvvIGGdg-------------S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
.+.-++.+++. .+++|||= +|..|..+.+...+.|+. -|++=.|++ ..+-..-+.-+|-++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 44556779998 99999984 566677776666667887 688888887 222224556688999
Q ss_pred HHHHHHHHHHHhhh--ccCCceEEE
Q 011540 291 EAQRAINAAHVEVE--SVENGVGIV 313 (483)
Q Consensus 291 ~~~~~i~~i~~~A~--S~~~rv~iV 313 (483)
.+++.|..+-..+. ....-+++|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 99988886655544 233347777
No 181
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=37.57 E-value=52 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
.+++...++++|.++++.||+-+..+.. .++++|.++.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~---~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVE---RLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHH---HHHHcCCEEEEEccC
Confidence 3455566669999999999998877654 344568888777776
No 182
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=37.01 E-value=54 Score=28.74 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=60.0
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
||.|+..|-. ++| +++++++ .+ .+.+.+..= .+-.-..++..+.....|+.- ..+.--+.++|
T Consensus 4 kvLIanrGei------a~r-~~ra~r~-~G-i~tv~v~s~------~d~~s~~~~~ad~~~~~~~~~--~~~~yl~~e~I 66 (110)
T PF00289_consen 4 KVLIANRGEI------AVR-IIRALRE-LG-IETVAVNSN------PDTVSTHVDMADEAYFEPPGP--SPESYLNIEAI 66 (110)
T ss_dssp EEEESS-HHH------HHH-HHHHHHH-TT-SEEEEEEEG------GGTTGHHHHHSSEEEEEESSS--GGGTTTSHHHH
T ss_pred EEEEECCCHH------HHH-HHHHHHH-hC-CcceeccCc------hhcccccccccccceecCcch--hhhhhccHHHH
Confidence 6777776654 333 3456654 34 466655531 112222222333333333211 11223578999
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
++..++.++++ +.||-|.+.-...|++.+.+.|+ .++|-
T Consensus 67 ~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 67 IDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp HHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred hhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 99999997776 56999999999999999988774 46664
No 183
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=36.98 E-value=3.9e+02 Score=25.65 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.++.+.+ ++|+++++..+.+. .....+++.+.+ +|||.+
T Consensus 49 ~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~~--ipvV~~ 89 (275)
T cd06307 49 AAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAAG--VPVVTL 89 (275)
T ss_pred HHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHCC--CcEEEE
Confidence 466677778 99999999866432 122234444455 456633
No 184
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=36.96 E-value=3.7e+02 Score=25.38 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=50.4
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHH
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~ 226 (483)
||++..+-.-|.....++++-+.+.. ++ .+++-+. +.....+..+++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA-AG-YQLLLGN-------------------------------TGYSPEREEELL 48 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCCCchhHHHHH
Confidence 67777776778888888888777653 33 2332111 011122345778
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.+...++|++++.+-+.+. . ..+.+.+.+ +|||.+
T Consensus 49 ~~l~~~~vdgiii~~~~~~~-~---~~~~~~~~~--ipvv~~ 84 (268)
T cd01575 49 RTLLSRRPAGLILTGLEHTE-R---TRQLLRAAG--IPVVEI 84 (268)
T ss_pred HHHHHcCCCEEEEeCCCCCH-H---HHHHHHhcC--CCEEEE
Confidence 88889999999999877552 2 222233334 567766
No 185
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=36.82 E-value=3.6e+02 Score=25.75 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
+++.+.+.+.++|++++.+.+.... ..+++.+.+ +|||.+-.
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 95 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWGR 95 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEECC
Confidence 4566777789999999998765421 124444445 56776643
No 186
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=36.75 E-value=63 Score=34.54 Aligned_cols=64 Identities=25% Similarity=0.388 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCc---EEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 222 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
..++.+.+.+++.+ .++-|||-=+...|..++-. ..+| ++.|.||-| =+..+|.+.|.-++++.
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT---lla~vda~~g~~~~v~~ 163 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 163 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC---CccccCCCccchhheec
Confidence 78889999999998 99999998888888776532 2334 679999999 23455666665555543
No 187
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=36.66 E-value=49 Score=34.59 Aligned_cols=64 Identities=23% Similarity=0.412 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHcC---CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 221 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 221 d~~~i~~~l~~~~---Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
..+++++.+.+++ .|.++-|||--.+..|..++... .++ +++|.||-|. +..+|-+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 4678888888877 89999999998888887776532 234 6799999983 244556666666555
No 188
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.42 E-value=3.9e+02 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.416 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..++++.+...++|++++.+.+..... ..+.+.+.+ +++|.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~---~~~~~~~~~--ipvV~~ 85 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPD---LLKRLAESG--IPVVLV 85 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH---HHHHHHhcC--CCEEEE
Confidence 446778888899999999987654322 223344445 557765
No 189
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.19 E-value=2.5e+02 Score=25.30 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=62.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccCh-hHHhchhccCcccccccCCC---
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSP-KVVNDIHKRGGTILRTSRGG--- 219 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~-~~v~~i~~~GGs~LGTsR~~--- 219 (483)
+.||-+-+.||+.= ..=..++...... .+.+|+ ..+-+ -++ +.++.....+..++|-|-..
T Consensus 2 ~~~v~~a~~g~D~H---d~g~~iv~~~l~~-~GfeVi---------~lg~~--~s~e~~v~aa~e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 2 RPRILVAKMGQDGH---DRGAKVIATAYAD-LGFDVD---------VGPLF--QTPEEIARQAVEADVHVVGVSSLAGGH 66 (132)
T ss_pred CCEEEEEeeCCCcc---HHHHHHHHHHHHh-CCcEEE---------ECCCC--CCHHHHHHHHHHcCCCEEEEcCchhhh
Confidence 35788888888653 3333333333322 334554 11111 222 34566666666666654432
Q ss_pred -ccHHHHHHHHHHcCC-cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 220 -HDTNKIVDNIEDRGI-NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 220 -~d~~~i~~~l~~~~I-d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
+.+.++++.|++.+. +..+++||.=.-... +++++.| .|..|+-.|-+..+.+.+.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~~G------------------vd~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQDF----DELKEMG------------------VAEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHHCC------------------CCEEECCCCCHHHHHHHHH
Confidence 346777888888777 556777775543222 2233334 3555566666666655554
Q ss_pred H
Q 011540 298 A 298 (483)
Q Consensus 298 ~ 298 (483)
.
T Consensus 125 ~ 125 (132)
T TIGR00640 125 K 125 (132)
T ss_pred H
Confidence 3
No 190
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.13 E-value=3.9e+02 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+..+.++.+...++|++++...+.+-. ..+.+.+.+ +|+|.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~--ipvV~~ 83 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLSSE----LAEECRRNG--IPVVLI 83 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhcC--CCEEEE
Confidence 345667788889999999988764432 233344445 567766
No 191
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=35.09 E-value=85 Score=29.34 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHcCCcEEEEEcCCCchHH---HHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHH
Q 011540 229 IEDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~ 292 (483)
+...++|++++-||.++... ...+.+++.++ ++||.|| |.|++......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~--~~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGK--KIPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhC--CCCEEEE-------------CHHHHHHHHHc
Confidence 34568999999999876433 23344444443 3678888 88988666544
No 192
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.04 E-value=1.8e+02 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHhchhccCcccccccCCC----ccHHHHHHHHHHcCC-cEEEEEcCCCc
Q 011540 201 VVNDIHKRGGTILRTSRGG----HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (483)
Q Consensus 201 ~v~~i~~~GGs~LGTsR~~----~d~~~i~~~l~~~~I-d~LvvIGGdgS 245 (483)
.++.....+-.+++-|-.. +...++++.|++.+. +..+++||...
T Consensus 42 ~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 42 IVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3455555555555554432 346777888888766 66778888754
No 193
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.88 E-value=4.6e+02 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..+.++.+..+++|++++.+.+... .....+++++.+ +|||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~g--iPvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKN--IPVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCC--CCEEEe
Confidence 4577888899999999998866431 122334444445 456654
No 194
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=34.87 E-value=2.4e+02 Score=29.09 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=32.6
Q ss_pred CccHHHHHHHHHHc--CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC
Q 011540 219 GHDTNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (483)
Q Consensus 219 ~~d~~~i~~~l~~~--~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD 280 (483)
..++.++++.+++. +.|+++|+-|-+||.-...+....- ..++.|||..=.-.--+.+.+|
T Consensus 56 ~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l-~~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 56 PEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLL-DNLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHE-ES-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHh-cCCCCCEEEeCCcCCCcCCCCc
Confidence 34555555555444 5999999999999988554444332 2445677755333333444444
No 195
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=34.43 E-value=58 Score=30.40 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=29.3
Q ss_pred HcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 231 ~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
..++|++++-||.++......+...++...-++||.|| |+|++-....
T Consensus 40 ~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGI-------------C~G~Qlla~~ 87 (184)
T cd01743 40 LLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGV-------------CLGHQAIAEA 87 (184)
T ss_pred hcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEE-------------CHhHHHHHHH
Confidence 35799999999999864432222211111223678877 9998865544
No 196
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=34.41 E-value=38 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~ 250 (483)
..+.++.|++++|| |+.||+-|+..|.
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 35667889999999 6899999877654
No 197
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=34.34 E-value=46 Score=29.17 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
+.+.+.+..++.++++-||+-+..+. +.++++|.++-+++.|...+
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s 132 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSAS 132 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-
T ss_pred HHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCC
Confidence 33444445679999999999887654 44456788888888654443
No 198
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=34.24 E-value=1.4e+02 Score=33.18 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=58.2
Q ss_pred eEEEEccCCCCcch-hHHHHHHHHHHHHhCCCcEEEEEc-ccccc-cccCCeeccChhHHhchhcc-------Ccc--cc
Q 011540 146 RACIVTCGGLCPGI-NTVIREIVCGLSYMYGVDEILGIE-GGYRG-FYSKNTLTLSPKVVNDIHKR-------GGT--IL 213 (483)
Q Consensus 146 ~iaIvtsGG~apGm-NavIr~iv~~~~~~~~~~~V~Gi~-~G~~G-L~~~~~~~L~~~~v~~i~~~-------GGs--~L 213 (483)
.|+|+++ ..+|+ -.=|.++++.....+++..|+.+. .||.| ..++-+.......++.+..+ .++ +|
T Consensus 131 ~I~V~tT--C~t~lIGDDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNli 208 (513)
T TIGR01861 131 RMTIYQT--CATALIGDDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYV 208 (513)
T ss_pred eEEEEcc--CchhhccCCHHHHHHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEe
Confidence 4666663 33332 223444444444334444566665 79998 44432211111112222110 111 34
Q ss_pred cccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHH
Q 011540 214 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALI 252 (483)
Q Consensus 214 GTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L 252 (483)
|.-...-|...+.+.|++.||+.+.++.|+.++.....+
T Consensus 209 G~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~ 247 (513)
T TIGR01861 209 GEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGM 247 (513)
T ss_pred CCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhh
Confidence 433334588999999999999999999999987665544
No 199
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=34.18 E-value=5.4e+02 Score=26.56 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=94.8
Q ss_pred EEccCCCCcchh-HHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcc-cccccCC-----Ccc
Q 011540 149 IVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRG-----GHD 221 (483)
Q Consensus 149 IvtsGG~apGmN-avIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~LGTsR~-----~~d 221 (483)
|+.+||+.=-++ .-+..+++.+.. .+..+. ++-|-+.... +...++.+.++.+...|=. .+++--. .+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~v~~--iri~Tr~~v~-~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDHVKI--VRFHTRVPVA-DPARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCCccE--EEEeCCCccc-ChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 677888876554 578888888764 332223 3334444322 2234577767766665522 3443221 234
Q ss_pred HHHHHHHHHHcCCcEEE---EE-cCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVY---II-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~Lv---vI-GGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|...--+.... .++|+ --|.+..+.+.+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g~---~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPGT---AHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCCc---ccccCcHHHHHHHHH
Confidence 67788889999997643 44 556777777778877777665422222221 22332 345677777778787
Q ss_pred HHHHhhhccCCceEEEEecCCC
Q 011540 298 AAHVEVESVENGVGIVKLMGRY 319 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR~ 319 (483)
.++...++.-.--+++|+.|+.
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7776555544446788888854
No 200
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=34.04 E-value=63 Score=32.36 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=56.2
Q ss_pred EEEEEcccccccccCCeeccChhHHhchhccCcc--cc-cccCC--CccHHHHHHHHHHcCCcEEEEEcCCCchH-----
Q 011540 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT--IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQK----- 247 (483)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs--~L-GTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS~~----- 247 (483)
..+-+.+|-.| .....++.....+...+|- +. =|+|. ...++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 45556665554 2233455556666666652 11 14454 34688889999999999999999986543
Q ss_pred -------HHHHHHHHHHHc---CCceeEeeec
Q 011540 248 -------GAALIYKEVEKR---GLQVAVAGIP 269 (483)
Q Consensus 248 -------~A~~L~~~~~~~---g~~i~VvgIP 269 (483)
.|..|.+.+++. ++.+.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 377777777663 4556666666
No 201
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.85 E-value=4.1e+02 Score=25.09 Aligned_cols=40 Identities=8% Similarity=0.162 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.+.+.+...++|++++...+..- .+.+.+.+++ +|||.+
T Consensus 50 ~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~--ipvV~~ 89 (270)
T cd06294 50 EEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEK--FPFVVI 89 (270)
T ss_pred HHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcC--CCEEEE
Confidence 445555677789999999754431 2233444455 556654
No 202
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=33.83 E-value=3.1e+02 Score=26.69 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=25.7
Q ss_pred hccCcccccccCCCccHHHHHHHHHH--cCCcEEEEEcCCCc
Q 011540 206 HKRGGTILRTSRGGHDTNKIVDNIED--RGINQVYIIGGDGT 245 (483)
Q Consensus 206 ~~~GGs~LGTsR~~~d~~~i~~~l~~--~~Id~LvvIGGdgS 245 (483)
.+.|||.|++. +.++++++.+.+ .+.+-++|.+|-+.
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~ 42 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGG 42 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 45789888653 345566665555 68999999977654
No 203
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=33.65 E-value=48 Score=31.36 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHH
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~ 289 (483)
+.+++++.|+|++-||-++-.......+.++....++||.|| |+|++.-+
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI-------------C~G~Qlla 86 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV-------------CLGHQALG 86 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 335677899999999998864432222222222335788888 99987544
No 204
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=33.35 E-value=56 Score=31.00 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
+.+++.+.|++++-||-|+-.......+.++....++|+.|| |+|++.-+.
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI-------------ClG~Q~la~ 87 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV-------------CLGHQAMAQ 87 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE-------------CHHHHHHHH
Confidence 345567899999999999876653333333333335778888 999875443
No 205
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=33.08 E-value=1.6e+02 Score=27.99 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=47.5
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
.++.++ || .|+ ++..+++.+...|++.++.|. +||-. . +-....++.|...+-.+|-..-+.+.-|.
T Consensus 49 ~~vfll--G~-~~~---v~~~~~~~l~~~yP~l~i~g~-~g~f~---~---~~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GG-KPD---VLQQLKVKLIKEYPKLKIVGA-FGPLE---P---EERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CC-CHH---HHHHHHHHHHHHCCCCEEEEE-CCCCC---h---HHHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 466655 44 454 344444555567899999887 66642 1 11233567777777766555554444445
Q ss_pred HHHHH-HHcCCcEEEEEcC
Q 011540 225 IVDNI-EDRGINQVYIIGG 242 (483)
Q Consensus 225 i~~~l-~~~~Id~LvvIGG 242 (483)
.+... +.++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 44444 4445555555666
No 206
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.76 E-value=3.1e+02 Score=27.84 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=43.0
Q ss_pred hchhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEee
Q 011540 203 NDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (483)
Q Consensus 203 ~~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 267 (483)
+.+...|+++..+.+. ..|+...+..+++.+-|.+++.+... .+..+.+.+++.|+++++++
T Consensus 160 ~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 160 AALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 3345567777766554 35788999999999999998887433 33346677777788766554
No 207
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=32.65 E-value=1.6e+02 Score=29.51 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=63.2
Q ss_pred eeccChhHHhchhccCc---ccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 194 TLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 194 ~~~L~~~~v~~i~~~GG---s~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
+++++...|.++-..+| .++|+.+.. .+|-+++++.|..+...+++ .+++|||.+=
T Consensus 15 ~~e~~~~vv~G~arl~G~~V~vIa~~~~~-------------------~~g~~~~~k~A~~v~~~~d~-~f~~PIv~lv- 73 (238)
T TIGR03134 15 EVAGDPGVLVGSAELAGGKVTVIGVVPDA-------------------EVGLDEALALAQAVLDVIEA-DDKRPIVVLV- 73 (238)
T ss_pred EEecCCcEEEEEEEECCEEEEEEEECCCC-------------------cCChHHHHHHHHHHHHHHHh-cCCCCEEEEE-
Confidence 44445444555555555 356665432 34556677777766554432 3567777662
Q ss_pred cccCCccccCCcCChhhH--HHHHHHHHHHHHHhh-hccCCceEEEEecCCCcchHHHHHhhhcCCCcEEe-cCCCCCCC
Q 011540 271 TIDNDIAVIDKSFGFDTA--VEEAQRAINAAHVEV-ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCL-IPESPFYL 346 (483)
Q Consensus 271 TIDNDi~gtD~S~GfdTA--~~~~~~~i~~i~~~A-~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vl-IPE~~f~l 346 (483)
|.||-..+..-.-. .+.+++.+.++..-. ..++ -|.+|==-|-..||||+ ++ ++|.+| .|.-.+..
T Consensus 74 ----DtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP-~IsvI~g~a~ggg~lam--g~---~ad~v~Alp~A~i~v 143 (238)
T TIGR03134 74 ----DTPSQAYGRREELLGINQALAHLAKALALARLAGHP-VIGLIYGKAISGAFLAH--GL---QADRIIALPGAMVHV 143 (238)
T ss_pred ----eCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC-EEEEEeCCccHHHHHHH--cc---CcCeEEEcCCcEEEe
Confidence 33333222211111 233344444332221 1233 36666433444688887 22 567777 67665554
Q ss_pred CChhhHHH
Q 011540 347 EGPGGLFE 354 (483)
Q Consensus 347 ~~~~~lle 354 (483)
=.+++...
T Consensus 144 m~~e~aa~ 151 (238)
T TIGR03134 144 MDLESMAR 151 (238)
T ss_pred cCHHHHHH
Confidence 44444433
No 208
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=32.62 E-value=42 Score=31.39 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=32.2
Q ss_pred ccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 215 TsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
--|+.+.+.+.++++++.+++.+|.+-|-...-. -.++- ....||||||-
T Consensus 37 aHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~-----~t~~PVIgvP~ 86 (150)
T PF00731_consen 37 AHRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVAS-----LTTLPVIGVPV 86 (150)
T ss_dssp TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHH-----HSSS-EEEEEE
T ss_pred ccCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhhee-----ccCCCEEEeec
Confidence 3466667788888888888998887776654332 22332 23578999994
No 209
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=32.46 E-value=1.5e+02 Score=32.89 Aligned_cols=89 Identities=25% Similarity=0.248 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHHHHHHHhh---------hccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHH
Q 011540 283 FGFDTAVEEAQRAINAAHVEV---------ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLF 353 (483)
Q Consensus 283 ~GfdTA~~~~~~~i~~i~~~A---------~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~ll 353 (483)
-|=.|++++.++..+--+++| .||.+-|-|-.+-|+.-.-+|+ |-||.++||++++-|-.-+++- +-+
T Consensus 664 ~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal-aeLal~~PDvlILDEPTNNLDI--ESI 740 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL-AELALGGPDVLILDEPTNNLDI--ESI 740 (807)
T ss_pred ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH-HHHhcCCCCEEEecCCCCCcch--hhH
Confidence 355678888766554444444 3444568888898988877764 5566668999998876555542 234
Q ss_pred HHHHHHHHhcCCeEEEEeCCC
Q 011540 354 EFIERQLKENGHMVIVVAEGA 374 (483)
Q Consensus 354 e~I~~rl~~~~~~vIVvaEGa 374 (483)
+.+.+.+.+-..+||+|+.-.
T Consensus 741 DALaEAIney~GgVi~VsHDe 761 (807)
T KOG0066|consen 741 DALAEAINEYNGGVIMVSHDE 761 (807)
T ss_pred HHHHHHHHhccCcEEEEeccc
Confidence 455555556566788887654
No 210
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.19 E-value=4.6e+02 Score=25.10 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=49.4
Q ss_pred eEEEEccCC-CCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccC-CCccHH
Q 011540 146 RACIVTCGG-LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHDTN 223 (483)
Q Consensus 146 ~iaIvtsGG-~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR-~~~d~~ 223 (483)
|||++.-.- .-|-.+..+.++-+.+.. ++. .+. +..+.. ......
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~-~v~-------------------------------~~~~~~~~~~~~~ 47 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGV-DVE-------------------------------YRGPETFDVADMA 47 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCC-EEE-------------------------------EECCCCCCHHHHH
Confidence 577777554 467777888888777653 222 222 111112 112344
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.++.|...++|++++.+.+..... ..+ +.+++++ ++||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~--ipvV~~ 88 (271)
T cd06312 48 RLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CeEEEe
Confidence 6777888889999999987643211 122 3344445 566665
No 211
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=32.14 E-value=2.9e+02 Score=28.58 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEE
Q 011540 164 REIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYII 240 (483)
Q Consensus 164 r~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvI 240 (483)
+.+++++.+..+..++.-+...+. +. .++.....+.+...|+.+.+..+. ..|+...+..++..+-|++++
T Consensus 149 ~~~~~~~~~~~~~k~va~i~~d~~--~g---~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~- 222 (369)
T PRK15404 149 PTAAKYILEKVKPKRIAVLHDKQQ--YG---EGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY- 222 (369)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCc--hh---HHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-
Confidence 344555544344556655544321 11 111122344566778888776554 468899999999999998765
Q ss_pred cCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 241 GGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 241 GGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+|++. ..+. +.+.+++.|++.++++.
T Consensus 223 ~~~~~-~~~~-~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 223 GGYHP-EMGQ-ILRQAREAGLKTQFMGP 248 (369)
T ss_pred CCCch-HHHH-HHHHHHHCCCCCeEEec
Confidence 45443 2233 55677778888776644
No 212
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.12 E-value=1.6e+02 Score=22.63 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
...+++++..++.|++++.+--=+ ++.+...+.+.+++.|++ .+.|+-.++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~-~~~~~~~~~~~~~~~gi~-~i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG-NLFGAVEFYKAAKKAGIK-PIIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC-cccCHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 357899999999999988766544 788888888888888875 366665544
No 213
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.00 E-value=1.5e+02 Score=29.43 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=63.5
Q ss_pred ccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-
Q 011540 270 KTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG- 348 (483)
Q Consensus 270 kTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~- 348 (483)
.|+.-|+.+-....|..-. +.-..+-..+....-........-++-|+.-=-+|.++.||. +|++++.=|-.-.+|.
T Consensus 95 ~tV~~evafg~~n~g~~~~-e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD~~ 172 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLDPK 172 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-HHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCCHH
Confidence 5777788777778888765 222222233333343433456677888888888999999999 8999998887666663
Q ss_pred -hhhHHHHHHHHHHhc-CCeEEEEe
Q 011540 349 -PGGLFEFIERQLKEN-GHMVIVVA 371 (483)
Q Consensus 349 -~~~lle~I~~rl~~~-~~~vIVva 371 (483)
...+++.++ ++.+. +..+|++.
T Consensus 173 ~~~~l~~~l~-~L~~~~~~tii~~t 196 (235)
T COG1122 173 GRRELLELLK-KLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHH-HHHhcCCCeEEEEe
Confidence 223455444 44444 44555543
No 214
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=30.58 E-value=5.9e+02 Score=25.95 Aligned_cols=114 Identities=25% Similarity=0.203 Sum_probs=0.0
Q ss_pred cccccCCccccCCcC-Chhh-HHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCc-EEecCCCCCC
Q 011540 269 PKTIDNDIAVIDKSF-GFDT-AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD-CCLIPESPFY 345 (483)
Q Consensus 269 PkTIDNDi~gtD~S~-GfdT-A~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad-~vlIPE~~f~ 345 (483)
|+|=..|..+.+.++ -||- |++++.+.-+. ....=-++=+||-...-=++.-+||- |+| .++|.-..|.
T Consensus 21 ~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~-------~~~~eV~vlt~Gp~~a~~~lr~aLAm-GaDraili~d~~~~ 92 (260)
T COG2086 21 PDTGTLDRSGVPLSINPFDLNAVEEALRLKEK-------GYGGEVTVLTMGPPQAEEALREALAM-GADRAILITDRAFA 92 (260)
T ss_pred cCCCccccCCCCcccChhhHHHHHHHHHhhcc-------CCCceEEEEEecchhhHHHHHHHHhc-CCCeEEEEeccccc
Q ss_pred CCChhhHHHHHHHHHHhcCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHH
Q 011540 346 LEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKI 408 (483)
Q Consensus 346 l~~~~~lle~I~~rl~~~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I 408 (483)
--.+......|.+.+++.+.-+|+..+.+.+.+. +.+|..|++++
T Consensus 93 ~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t------------------~qvg~~lAe~L 137 (260)
T COG2086 93 GADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT------------------GQVGPLLAELL 137 (260)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecccccCCc------------------cchHHHHHHHh
No 215
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=30.25 E-value=73 Score=29.64 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=35.4
Q ss_pred HHcCCcEEEEEcCCCchHH---HHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHH
Q 011540 230 EDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (483)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~ 293 (483)
...+.|++++-||.++... ...+.+++.+ .++|+.|| |+|++..+...-
T Consensus 39 ~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~--~~~PilGI-------------C~G~Q~la~~~G 90 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYDIEGLIELIREARE--RKIPILGI-------------CLGHQILAHALG 90 (192)
T ss_dssp HTTTSSEEEEECESSSTTSHHHHHHHHHHHHH--TTSEEEEE-------------THHHHHHHHHTT
T ss_pred hhcCCCEEEECCcCCccccccccccccccccc--cceEEEEE-------------eehhhhhHHhcC
Confidence 5678999999999998653 3334444444 35778998 999987776553
No 216
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=30.22 E-value=4.3e+02 Score=24.93 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=37.8
Q ss_pred hhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+...|+.+.+.... ..+....+..+++.+.+.+++.+..+ .+..+.+.+++.|+++++++.
T Consensus 159 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 222 (298)
T cd06268 159 LKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGG 222 (298)
T ss_pred HHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEec
Confidence 34455555444332 24677888888888889888776542 334455666677776666654
No 217
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.20 E-value=85 Score=31.56 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
..++.++.+++.|++++++- |........+.+.++++|++.-.+.-|.|
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 35788999999999999998 77888888888999999988666666655
No 218
>PLN02204 diacylglycerol kinase
Probab=30.14 E-value=66 Score=36.53 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=42.3
Q ss_pred cEEEEEcccccccccCCeeccChhHHhchhccCc---ccccccCCCccHHHHHHH---HHHcCCcEEEEEcCCCchHHHH
Q 011540 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDN---IEDRGINQVYIIGGDGTQKGAA 250 (483)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GG---s~LGTsR~~~d~~~i~~~---l~~~~Id~LvvIGGdgS~~~A~ 250 (483)
.+++-|.|=+.|= +.-. -.|+.|..+....| .++-|.|.++-.+ +++. +...+.|+++++|||||+..+.
T Consensus 160 k~llVivNP~sGk--g~~~-~~~~~V~p~f~~a~i~~~v~~T~~aghA~d-~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGK--GSGS-RTWETVSPIFIRAKVKTKVIVTERAGHAFD-VMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCC--cchH-HHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 4666677766652 2211 23566776666655 2556766643333 3332 2356789999999999987643
No 219
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=29.84 E-value=3.5e+02 Score=27.26 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=45.4
Q ss_pred Hhchhc--cCcccccccCC---C-ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 202 VNDIHK--RGGTILRTSRG---G-HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 202 v~~i~~--~GGs~LGTsR~---~-~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
...+.. .|+++++..+. . .|+...+..+++.+.|++++++..+ .+..+.+.+++.|++.++++.
T Consensus 164 ~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 233 (342)
T cd06329 164 KAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTP 233 (342)
T ss_pred HHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEec
Confidence 344555 77888876554 3 5788888999999999998877443 234566777778887766644
No 220
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.63 E-value=1.5e+02 Score=30.70 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC-ccc---cCCcCChhhHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAV---IDKSFGFDTAVEEAQRAI 296 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND-i~g---tD~S~GfdTA~~~~~~~i 296 (483)
++++.+..|.+ .+|.++||||..|-.+ .+|++-+++.+.+.-.|-=+.=||-+ +.+ +--|=|..|=-..+.+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 45666777755 6999999999999766 45778787777555555555555522 121 122445555555555555
Q ss_pred HHHH
Q 011540 297 NAAH 300 (483)
Q Consensus 297 ~~i~ 300 (483)
+.+.
T Consensus 277 ~~l~ 280 (298)
T PRK01045 277 ARLK 280 (298)
T ss_pred HHHH
Confidence 4443
No 221
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.50 E-value=2.8e+02 Score=27.35 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=41.4
Q ss_pred hhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+...|++++.+... ..++...+..+++.+.|.+++.+..+. +..+.+++++.|+++++++.
T Consensus 160 ~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~---~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 160 FKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTE---VGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhh---HHHHHHHHHHcCCCCcEEec
Confidence 33457777765443 357888889999999999888765543 34455666777887666653
No 222
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.47 E-value=5.3e+02 Score=24.92 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc----cCCcCChh--hHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV----IDKSFGFD--TAVEEAQRA 295 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g----tD~S~Gfd--TA~~~~~~~ 295 (483)
..+.++.+..+++|++++...+.. . ...+.+++.+.+ +|||.+ |.+++. ...+++.| .+.+.+++.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~-~-~~~~i~~~~~~~--iPvV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~ 115 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGIG-T-LTEAVQKAIARG--IPVIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQA 115 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChH-H-hHHHHHHHHHCC--CcEEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 456778888999999999765421 1 122334444445 556665 333321 11223333 334444443
Q ss_pred HHHHHHhhhccCCceEEEEe-------cCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc
Q 011540 296 INAAHVEVESVENGVGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363 (483)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEv-------MGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~ 363 (483)
+-+ ....+ +++.++.- .-|..||........ +...+-+.+..++.+ .-.+.+++.++++
T Consensus 116 l~~---~~~g~-~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 181 (272)
T cd06313 116 LCN---AMGGK-GKIAMLQGALGHTGAQGRAQGFNDVIKKYP--DIEVVDEQPANWDVS---KAARIWETWLTKY 181 (272)
T ss_pred HHH---HcCCC-ceEEEEECCCCCcchhHHHHHHHHHHHhCC--CCEEEeccCCCCCHH---HHHHHHHHHHHhC
Confidence 322 22233 45777741 236667776554311 133332223334332 3455566656554
No 223
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=29.47 E-value=3.3e+02 Score=26.93 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHh-chhccCcccccccCC---CccHHHHHHHHHHc
Q 011540 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVN-DIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (483)
Q Consensus 157 pGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~-~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~ 232 (483)
|.-....+.++..+.+.++..+|.-+.... .+-.-....+. .+...|.++.++... ..|+...+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~ 189 (334)
T cd06342 116 ARDDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAA 189 (334)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc
Confidence 334455566666554445555555443221 11111112222 233456777766554 25788999999999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEee
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 267 (483)
+.+.+++.| .+. .+..+.+.+++.|++.++++
T Consensus 190 ~~~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 190 NPDAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred CCCEEEEcC-cch--hHHHHHHHHHHcCCCCcEEe
Confidence 999887655 332 23446677777788765554
No 224
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.96 E-value=7.3e+02 Score=26.94 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee-cccccCCccccCCcCCh--hhHHHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGF--DTAVEEAQRAI 296 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDi~gtD~S~Gf--dTA~~~~~~~i 296 (483)
....++++.+++.-=+.+++.|+-.|...|..+.+ .|.+.-.+|+ |.||.---..+ ..|. -||+..+.+++
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~----aGaD~I~vG~g~Gs~c~tr~~~--g~g~p~ltai~~v~~~~ 252 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS----VGADCLKVGIGPGSICTTRIVA--GVGVPQITAICDVYEVC 252 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH----cCCCEEEECCCCCcCCcceeec--CCCCChHHHHHHHHHHH
Confidence 44667777777643467788889999999988865 3777655675 66553221111 1233 34555555443
Q ss_pred HHHHHhhhccCCceEEEEecC--CCcchHHHHHhhhcCCCcEEecC
Q 011540 297 NAAHVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 340 (483)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEvMG--R~~G~LA~~aaLA~~~ad~vlIP 340 (483)
+. . .+-|+ ..| |+.|.++- ||+. |||.|.+-
T Consensus 253 ~~-------~--~vpVI-AdGGI~~~~Di~K--ALal-GA~aVmvG 285 (404)
T PRK06843 253 KN-------T--NICII-ADGGIRFSGDVVK--AIAA-GADSVMIG 285 (404)
T ss_pred hh-------c--CCeEE-EeCCCCCHHHHHH--HHHc-CCCEEEEc
Confidence 31 1 23333 455 45666654 4555 78877754
No 225
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.76 E-value=6.8e+02 Score=26.00 Aligned_cols=104 Identities=21% Similarity=0.191 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee-cccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
...++++.+++..=+..+++|.-.|...|..+.+ .|.+.-+|++ |.++...-..+.....--|++..+.++++..
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~ 196 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY 196 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc
Confidence 3455666666654345666677777777776654 3666444432 5553221111111112224444444433211
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEec
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLI 339 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlI 339 (483)
.+-|| ..|+-.----...+|+. |||.|.+
T Consensus 197 ---------~vpVI-A~GGI~~~~di~kAla~-GA~~Vmi 225 (325)
T cd00381 197 ---------GVPVI-ADGGIRTSGDIVKALAA-GADAVML 225 (325)
T ss_pred ---------CCcEE-ecCCCCCHHHHHHHHHc-CCCEEEe
Confidence 24444 44554322233455566 7998887
No 226
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=28.76 E-value=1.4e+02 Score=31.50 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=48.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccc-cc--ccccCCeeccChhHHhchhccCcccccccC-CCcc
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGG-YR--GFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHD 221 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G-~~--GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR-~~~d 221 (483)
||. +.+||...=+..+ ++++.+.+..+..+++|+-++ .+ |+-. ..+++...+.++.. .|..-+ -..-
T Consensus 7 ki~-i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~~m~~~g~~~--~~~~~~l~v~G~~~----~l~~~~~~~~~ 77 (385)
T TIGR00215 7 TIA-LVAGEASGDILGA--GLRQQLKEHYPNARFIGVAGPRMAAEGCEV--LYSMEELSVMGLRE----VLGRLGRLLKI 77 (385)
T ss_pred eEE-EEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccHHHHhCcCcc--ccChHHhhhccHHH----HHHHHHHHHHH
Confidence 443 3345544447766 667777654555677887542 11 1111 12333333333321 121111 0123
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCC
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDG 244 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdg 244 (483)
+.++.+.+++.+.|.++.+||-+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~ 100 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD 100 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC
Confidence 56888899999999999999743
No 227
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=28.75 E-value=1.5e+02 Score=30.55 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc-cccC---CcCChhhHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVID---KSFGFDTAVEEAQRAI 296 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi-~gtD---~S~GfdTA~~~~~~~i 296 (483)
++++.+..|.+ .+|.++||||.-|- ...+|++-+++.+.+.-.|-=|.=|+.+. .+.+ -|=|..|=-..+-+.+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~Ss-NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi 275 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSS-NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVI 275 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-H-HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCc-cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHH
Confidence 45677777765 69999999999995 55678888888776554554455444322 1111 2445555555555555
Q ss_pred HHH
Q 011540 297 NAA 299 (483)
Q Consensus 297 ~~i 299 (483)
+.+
T Consensus 276 ~~l 278 (281)
T PF02401_consen 276 DRL 278 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 228
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=28.28 E-value=1.5e+02 Score=32.69 Aligned_cols=52 Identities=10% Similarity=0.251 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
+++..+..|-+..+|.++||||.-|-.+.+ |++-+++++.+.-.|-=|.=|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT~~-L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNTSH-LQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccHHH-HHHHHHHhCCCEEEECCHHHcC
Confidence 356666667556799999999999876644 7777777776655555566565
No 229
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=28.19 E-value=74 Score=33.75 Aligned_cols=96 Identities=22% Similarity=0.444 Sum_probs=48.7
Q ss_pred CCeeEEEEccCCCCcchhH-HHHHHHHHHHHhC--------CCcEEEEEcccccccccC-C---eeccChhHHhchhccC
Q 011540 143 DEVRACIVTCGGLCPGINT-VIREIVCGLSYMY--------GVDEILGIEGGYRGFYSK-N---TLTLSPKVVNDIHKRG 209 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNa-vIr~iv~~~~~~~--------~~~~V~Gi~~G~~GL~~~-~---~~~L~~~~v~~i~~~G 209 (483)
++.|||+||+||..|--|. -|.+.-..-+..| ...+..-+|.||.--.-+ + +++|+ .++.+...|
T Consensus 226 s~akIALVTtGGivPkgnPD~i~ss~a~~~g~Y~I~~~~~l~~~~~~~~HgGYD~~~an~D~N~v~PlD--~LreL~~EG 303 (349)
T PF07355_consen 226 SKAKIALVTTGGIVPKGNPDRIESSSATKYGKYDISGMDDLSSDDYMTIHGGYDPAYANEDPNRVFPLD--RLRELEKEG 303 (349)
T ss_pred HHCEEEEEeccCcccCCCCCccCCCCCCCceeeeCcCcCCCCccceEeeccccChhHhccCCCeeeeHH--HHHHHHHcC
Confidence 4579999999999998882 2222110000001 112344456666544321 1 23333 223332222
Q ss_pred --c-------ccccc--cCC--CccHHHHHHHHHHcCCcEEEEE
Q 011540 210 --G-------TILRT--SRG--GHDTNKIVDNIEDRGINQVYII 240 (483)
Q Consensus 210 --G-------s~LGT--sR~--~~d~~~i~~~l~~~~Id~LvvI 240 (483)
| |.-|+ +.. ...-.+|++.|++.++|+++..
T Consensus 304 ~IG~l~~~~yst~G~gt~~~~~~~~g~eIa~~Lk~dgVDAVILT 347 (349)
T PF07355_consen 304 VIGSLAPYFYSTMGNGTAVANAKRFGPEIAKELKEDGVDAVILT 347 (349)
T ss_pred CcccccCeeEEcCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 11222 111 1235789999999999998863
No 230
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=28.18 E-value=96 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=30.1
Q ss_pred cCCcEEEEEcCCCchHHHH---HHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHH
Q 011540 232 RGINQVYIIGGDGTQKGAA---LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~---~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~ 292 (483)
.++|+|++-||.++-.... .+.+++.+ .++||.|| |+|++..+...
T Consensus 45 ~~~dgliisGGp~~~~~~~~~~~~i~~~~~--~~~PiLGI-------------C~G~Qlla~a~ 93 (214)
T PRK07765 45 AQFDGVLLSPGPGTPERAGASIDMVRACAA--AGTPLLGV-------------CLGHQAIGVAF 93 (214)
T ss_pred cCCCEEEECCCCCChhhcchHHHHHHHHHh--CCCCEEEE-------------ccCHHHHHHHh
Confidence 3699999999998754332 23333332 24678887 99988665443
No 231
>PRK04155 chaperone protein HchA; Provisional
Probab=28.09 E-value=6.7e+02 Score=25.73 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=26.0
Q ss_pred cHHHHHHHHH--HcCCcEEEEEcCCCchHH------HHHHHHHHHHcC
Q 011540 221 DTNKIVDNIE--DRGINQVYIIGGDGTQKG------AALIYKEVEKRG 260 (483)
Q Consensus 221 d~~~i~~~l~--~~~Id~LvvIGGdgS~~~------A~~L~~~~~~~g 260 (483)
..+.+.+... ..+.|+||+-||-|.+.. ..+|.+++.+.+
T Consensus 133 ~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~ 180 (287)
T PRK04155 133 KLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND 180 (287)
T ss_pred eHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC
Confidence 3455555544 468999999999988654 344455555444
No 232
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=28.03 E-value=4.3e+02 Score=26.15 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=58.5
Q ss_pred CcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccCCC---ccHHHHHHHHHH
Q 011540 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNIED 231 (483)
Q Consensus 156 apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR~~---~d~~~i~~~l~~ 231 (483)
+|.-....+.+++.+.+ .+..++.-+..- ..+ ...-....+.+...|+.+....... .+....+..+++
T Consensus 117 ~~~~~~~~~~~~~~l~~-~g~~~v~~l~~~------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~ 189 (336)
T cd06326 117 RASYADEIAAIVRHLVT-LGLKRIAVFYQD------DAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA 189 (336)
T ss_pred CCChHHHHHHHHHHHHH-hCCceEEEEEec------CcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh
Confidence 34455566777777654 454455444221 111 1111112344556677665554432 477788888888
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.|++|+.+-.. .+..+.+.+++.|++++++++
T Consensus 190 ~~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 190 ARPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred cCCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEE
Confidence 8899887766332 233455667778988777765
No 233
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=27.77 E-value=1.5e+02 Score=26.04 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~ 294 (483)
+++++.|.+ ..++.|||-+-..+.+++..+....++.-++-.|+ +|+......-.|+-++-+....
T Consensus 43 ~~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~--~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 43 PEVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK--DNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred HHHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec--CCceEEEEEEeCCCCHHHHHHH
Confidence 567777754 37999999998888999988887888877777777 4666666667788877665543
No 234
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=27.67 E-value=6e+02 Score=25.04 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=45.0
Q ss_pred cEEEEEcCCC----chHHHHHHHHHHHHcCCceeEeeecccccCCccccCCc----CChhhHHHHHHHHHHHHHHhhhcc
Q 011540 235 NQVYIIGGDG----TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKS----FGFDTAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 235 d~LvvIGGdg----S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S----~GfdTA~~~~~~~i~~i~~~A~S~ 306 (483)
-.|++.||.+ +.+.-..+++.+.++|+.+-.+ |++|...| .+++...+.+..+++.++......
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~--------Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~ 99 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRF--------DYRGMGDSEGENLGFEGIDADIAAAIDAFREAAPHL 99 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEe--------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 4677888874 3333355778887778764333 33333333 355555666677777776543222
Q ss_pred CCceEEEEecCCCcc-hHHHHHh
Q 011540 307 ENGVGIVKLMGRYSG-FISMYAT 328 (483)
Q Consensus 307 ~~rv~iVEvMGR~~G-~LA~~aa 328 (483)
+ ++.+ +|.+.| .+|+..+
T Consensus 100 ~-~i~l---~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 100 R-RIVA---WGLCDAASAALLYA 118 (274)
T ss_pred C-cEEE---EEECHHHHHHHHHh
Confidence 2 3443 455554 4444444
No 235
>PRK05261 putative phosphoketolase; Provisional
Probab=27.67 E-value=7.6e+02 Score=29.24 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcE--EEEEcccccccc
Q 011540 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDE--ILGIEGGYRGFY 190 (483)
Q Consensus 141 ~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~--V~Gi~~G~~GL~ 190 (483)
.++.+|--.+==-|-|||+|-+-..+.+-. +.+.-.. |.|-=+|-.+++
T Consensus 40 ~~~~~K~r~~GHwGt~pgln~vyahln~li-~~~~~~~~~V~g~GHg~p~~~ 90 (785)
T PRK05261 40 KPEHVKPRLLGHWGTTPGLNFIYAHLNRLI-RKYDLNMIYITGPGHGGPAMV 90 (785)
T ss_pred CHHHCCcccCCCCCCcHHHHHHHHHHHHHH-hhcCCceEEEeCCCccHHHHH
Confidence 344555555666788999998866666544 3454443 444457777775
No 236
>PRK04011 peptide chain release factor 1; Provisional
Probab=27.63 E-value=2.9e+02 Score=29.86 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=17.3
Q ss_pred chHHHHHhhhcCCCcEEecCCCC
Q 011540 321 GFISMYATLASRDVDCCLIPESP 343 (483)
Q Consensus 321 G~LA~~aaLA~~~ad~vlIPE~~ 343 (483)
|.=...-||..+.++..||+|.-
T Consensus 300 G~~~V~~Ale~GAVetLLV~d~l 322 (411)
T PRK04011 300 GEEEVRKALEMGAVDTLLISEDL 322 (411)
T ss_pred cHHHHHHHHHcCCceEEEEeccc
Confidence 66667778887678888898753
No 237
>PTZ00063 histone deacetylase; Provisional
Probab=27.52 E-value=2.8e+02 Score=30.44 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHHHHHHHcCCcEEEEE
Q 011540 161 TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYII 240 (483)
Q Consensus 161 avIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvI 240 (483)
.+.+.++..+...+. .+++-+.-|+.++..+..-.++ | +.....++++.++++++-.+++.
T Consensus 236 ~~f~~ii~~~i~~f~-Pd~IvvqaG~D~~~~DpLg~l~--------------L----t~~g~~~~~~~~~~~~~pil~l~ 296 (436)
T PTZ00063 236 DLFKPVISKCVEVYR-PGAIVLQCGADSLTGDRLGRFN--------------L----TIKGHAACVEFVRSLNIPLLVLG 296 (436)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEECCccccCCCCCCCcc--------------c----CHHHHHHHHHHHHhcCCCEEEEe
Confidence 355555544444444 4788899999998765532211 1 12335567888899999988888
Q ss_pred cCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCC
Q 011540 241 GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK 281 (483)
Q Consensus 241 GGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~ 281 (483)
||-=+.....+-..+.- + .+++.|..|+++||..++
T Consensus 297 gGGY~~~~lar~w~~~t--~---~~~~~~~~~~~~iP~~~~ 332 (436)
T PTZ00063 297 GGGYTIRNVARCWAYET--G---VILNKHDEMSDQISLNDY 332 (436)
T ss_pred CccCCchHHHHHHHHHH--H---HHhCCcccCCccCCCCcc
Confidence 88777766544433321 1 256777789999997663
No 238
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=27.50 E-value=1.1e+02 Score=28.83 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
..|+|++.||-++-.....+.+.+++..-++|+.|| |+|++--+..
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlla~~ 88 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV-------------CLGHQTLCEF 88 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE-------------cHHHHHHHHH
Confidence 478999999998543333344444333335678888 9999844433
No 239
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=27.44 E-value=1.1e+02 Score=36.12 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~ 253 (483)
..+++++.+++.++|.++-|||--.+..|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 467889999999999999999999999988775
No 240
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.42 E-value=56 Score=36.44 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHcC---CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 221 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 221 d~~~i~~~l~~~~---Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
..+++++.+.+.+ .|.++-|||--++..|..++... .+| +++|.||-|. ++.+|-|+|.-|+++
T Consensus 254 ~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl---lA~vDss~ggkt~in 320 (542)
T PRK14021 254 VANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL---LAMVDASTGGKTGIN 320 (542)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH---HhhhccccCCceEEE
Confidence 3567778888884 89999999988888888776422 245 6799999986 245555666555554
No 241
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=27.17 E-value=4.4e+02 Score=27.39 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=53.5
Q ss_pred EEEEEcCCCchHH-HHHHHHHHHHcCCceeEeeecccccCCc---cccCC-cC---Chhh-----HHHHHHHHHHH---H
Q 011540 236 QVYIIGGDGTQKG-AALIYKEVEKRGLQVAVAGIPKTIDNDI---AVIDK-SF---GFDT-----AVEEAQRAINA---A 299 (483)
Q Consensus 236 ~LvvIGGdgS~~~-A~~L~~~~~~~g~~i~VvgIPkTIDNDi---~gtD~-S~---GfdT-----A~~~~~~~i~~---i 299 (483)
.++.-||-|-+-. |..++++++++|.++-+++-++-++.++ .+.++ ++ |+.- -+......+.. +
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 4566677766544 7788888888888888888888777766 12221 22 2221 11111111111 1
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcC
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASR 332 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~ 332 (483)
..-.... +--+|=.+|.+.+.-++.+|...+
T Consensus 84 ~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~ 114 (352)
T PRK12446 84 YVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNR 114 (352)
T ss_pred HHHHHhc--CCCEEEecCchhhHHHHHHHHHcC
Confidence 1111111 233566699999888888887773
No 242
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.83 E-value=8e+02 Score=26.16 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHc-CCcEEEEEcCCCchHHHHHHHHHHHHc--CCc-eeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 222 TNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKR--GLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 222 ~~~i~~~l~~~-~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~~-i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
.+.|.+..+++ +.+.++|++.--+-.....+..-+++. ..+ ++||.|+ ..+..+..+.-||+.|++.+.+.+-
T Consensus 76 ~~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~---tpgf~g~~~~~G~~~a~~al~~~l~ 152 (415)
T cd01977 76 KKNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCN---APGFAGPSQSKGHHVLNIAWINQKV 152 (415)
T ss_pred HHHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEe---CCCcCCcchhHHHHHHHHHHHHHhh
Q ss_pred HHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEE-EEeCCCCc
Q 011540 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI-VVAEGAGQ 376 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vI-VvaEGa~~ 376 (483)
.........++.|-++ | .+... +.++.|++-+++-|.-++ +...|..-
T Consensus 153 ~~~~~~~~~~~~VNli---G-------------------------~~~~~---~d~~ei~~lL~~~Gl~v~~~~~~~~t~ 201 (415)
T cd01977 153 GTVEPEITSDYTINYI---G-------------------------DYNIQ---GDTEVLQKYFERMGIQVLSTFTGNGTY 201 (415)
T ss_pred CcCCcCcCCCCcEEEE---c-------------------------cCCCc---ccHHHHHHHHHHcCCeEEEEECCCCCH
Q ss_pred hhhhccCCccccccccCCccch-hHHHHHHHHHHhhcc
Q 011540 377 EFVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKDHFT 413 (483)
Q Consensus 377 ~~~~~~~~~~~~~D~~Gn~~l~-~ig~~La~~I~e~~~ 413 (483)
+-+... -++.-|..+. ..+..+++.++++++
T Consensus 202 ~ei~~~------~~A~lnlv~~~~~~~~~A~~L~er~G 233 (415)
T cd01977 202 DDLRWM------HRAKLNVVNCARSAGYIANELKKRYG 233 (415)
T ss_pred HHHHhc------ccCCEEEEEchhHHHHHHHHHHHHhC
No 243
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=26.75 E-value=5.5e+02 Score=24.23 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChh--hHHHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFD--TAVEEAQRAINA 298 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~Gfd--TA~~~~~~~i~~ 298 (483)
..++++.+...++|++++.+.+.+.. +.+++++.+ +|+|.+ |++.+... .++++| .+.+.+++.+..
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 45667778889999999998654432 233343444 566665 33322222 234443 455544444422
Q ss_pred HHHhhhccCCceEEEE
Q 011540 299 AHVEVESVENGVGIVK 314 (483)
Q Consensus 299 i~~~A~S~~~rv~iVE 314 (483)
.++ ++|.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 244 5677774
No 244
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.62 E-value=4.5e+02 Score=26.07 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=42.2
Q ss_pred hchhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEee
Q 011540 203 NDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (483)
Q Consensus 203 ~~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 267 (483)
+.+...|+.+.+..+. ..|+...+..+++.+-|.+++.+... .+..+.+.+++.|++.++++
T Consensus 159 ~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 159 KAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 4455677877776554 35788999999999999998775433 33445555666787655554
No 245
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=26.48 E-value=1e+02 Score=31.04 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=38.7
Q ss_pred ccCC--CccHHHHHHHHHHcCCcEEEEEcCCCc----------hHHHHHHHHHHHHc--CCceeEeeecc
Q 011540 215 TSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT----------QKGAALIYKEVEKR--GLQVAVAGIPK 270 (483)
Q Consensus 215 TsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS----------~~~A~~L~~~~~~~--g~~i~VvgIPk 270 (483)
|+|. ...++..+..+...||+.+++++||-. +..|..|-+.+++. .+.|-+++.|-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4454 235677788889999999999999976 23466666666553 45566666663
No 246
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.25 E-value=5.7e+02 Score=24.31 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=51.3
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTNK 224 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~~ 224 (483)
|||++...-.-|....+++++-+.+.. ++ ..||. -++ ++..+... ....+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~~-------~~g~~----~~l-----------------~i~~~~~~~~~~~~ 51 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKE-LK-------KAGLI----SEF-----------------IVTSADGDVAQQIA 51 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHh-hh-------ccCCe----eEE-----------------EEecCCCCHHHHHH
Confidence 678888666677777788887776643 20 00110 000 12222222 23456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.++.+...++|++++.+.+.. ......+.+.+++ +|||.+-..
T Consensus 52 ~~~~~~~~~vdgiIi~~~~~~--~~~~~l~~~~~~~--iPvv~~~~~ 94 (272)
T cd06300 52 DIRNLIAQGVDAIIINPASPT--ALNPVIEEACEAG--IPVVSFDGT 94 (272)
T ss_pred HHHHHHHcCCCEEEEeCCChh--hhHHHHHHHHHCC--CeEEEEecC
Confidence 677788889999999887632 1122223444444 667777443
No 247
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=26.18 E-value=2e+02 Score=26.06 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=54.0
Q ss_pred EEEEEcCC--CchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCC-hhhHHHHHHHHHHHHHHhhhccCCceEE
Q 011540 236 QVYIIGGD--GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG-FDTAVEEAQRAINAAHVEVESVENGVGI 312 (483)
Q Consensus 236 ~LvvIGGd--gS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~G-fdTA~~~~~~~i~~i~~~A~S~~~rv~i 312 (483)
.++.+--| .+-..|..|.+++++++..+.+..+++ +...| .+ |..++...++.+...-..+......++|
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~-----l~~~~--~~~F~~Gl~~Lv~~~~~~v~~~~~~~~~v~~ 96 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG-----LQTED--PEKFREGLRNLVRWVAEEVKNYKGRGYEVIF 96 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE--------E------HHHHHHHHHHHHHHTHHHHHHHHHTT-EEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee-----ecccc--hHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 45555433 234557778888888888877777665 33222 22 8888888888777765544444444544
Q ss_pred EEecCCCc---chHHHHHhhhcCCCcEEecCCC
Q 011540 313 VKLMGRYS---GFISMYATLASRDVDCCLIPES 342 (483)
Q Consensus 313 VEvMGR~~---G~LA~~aaLA~~~ad~vlIPE~ 342 (483)
- .-|++= +|+.+.+.+ . +..++|+-|.
T Consensus 97 n-~TGGfK~~~~~~~~~g~~-~-~~~v~Yi~E~ 126 (136)
T PF09651_consen 97 N-ATGGFKAEIAYLTLLGML-Y-GDPVYYIFEE 126 (136)
T ss_dssp E--SSS-HHHHHHHHHHHHH-T---EEEEEETT
T ss_pred E-eCCChHHHHHHHHHHHHH-c-CCCEEEEEcC
Confidence 4 455553 555555555 3 6789999986
No 248
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.00 E-value=65 Score=34.08 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=45.5
Q ss_pred cCCcEEEEEcCCCchHH---HHHHHHHHHHc-----CCceeEeeecccccCCc-------cccCCcCChhhHHHHHHHHH
Q 011540 232 RGINQVYIIGGDGTQKG---AALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQRAI 296 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~---A~~L~~~~~~~-----g~~i~VvgIPkTIDNDi-------~gtD~S~GfdTA~~~~~~~i 296 (483)
..++.+++-||.-|+-. ...|.+.++++ +..+.+-.=|.|++.+. ..+-.|+|.+|.-....+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 57999999999999743 34455555552 34677888899998775 33556999988876554433
No 249
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=25.86 E-value=5.7e+02 Score=24.16 Aligned_cols=66 Identities=6% Similarity=0.039 Sum_probs=43.0
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHH
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~ 226 (483)
|||+...=+.|..+.++.++-+.+.. ++. ++.-+. +........+.+
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~~-------------------------------~~~~~~~~~~~i 48 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYK-KGY-KLILCN-------------------------------SDNDPEKEREYL 48 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHH-CCC-eEEEec-------------------------------CCccHHHHHHHH
Confidence 67888776788899999998877753 332 332100 111112234667
Q ss_pred HHHHHcCCcEEEEEcCCCc
Q 011540 227 DNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS 245 (483)
+.+...++|++++.+.+..
T Consensus 49 ~~~~~~~~dgiii~~~~~~ 67 (265)
T cd06291 49 EMLRQNQVDGIIAGTHNLG 67 (265)
T ss_pred HHHHHcCCCEEEEecCCcC
Confidence 7888999999999887644
No 250
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=25.84 E-value=6.6e+02 Score=24.90 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..++++.+...++|++++.+-+... .....+++.+.+ +|||.+
T Consensus 43 q~~~i~~l~~~~vDgIIi~~~~~~~--~~~~l~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 43 QISQIENLIARGVDVLVIIPQNGQV--LSNAVQEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhH--HHHHHHHHHHCC--CeEEEe
Confidence 4578899999999999998765431 122334444445 667765
No 251
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=25.66 E-value=6.2e+02 Score=24.48 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=42.1
Q ss_pred eEEEEccC---CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccH
Q 011540 146 RACIVTCG---GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (483)
Q Consensus 146 ~iaIvtsG---G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~ 222 (483)
|||++... -.-|-.+.++.++-+.+.+ ++. +++-. .+....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~gy-~~~i~--------------------------------~~~~~~~~ 46 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LGI-EYKYV--------------------------------ESKSDADY 46 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cCC-eEEEE--------------------------------ecCCHHHH
Confidence 57888865 3678899999999888864 332 23210 11112234
Q ss_pred HHHHHHHHHcCCcEEEEEcC
Q 011540 223 NKIVDNIEDRGINQVYIIGG 242 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGG 242 (483)
.+.++.|...++|++++.+-
T Consensus 47 ~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 47 EPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHhCCCCEEEEcCc
Confidence 56788899999999999874
No 252
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.21 E-value=39 Score=37.98 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHH-HHHHHH-HHcCCceeEeeecccccCCcccc-CCcCChhhHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAA-LIYKEV-EKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~-~L~~~~-~~~g~~i~VvgIPkTIDNDi~gt-D~S~GfdTA~~~~~~~i~ 297 (483)
...+++.++.--+-|+++++||||.+.-+. =|.+.- -+...++++--||.==+|++..+ -.+-||+-+++.....|
T Consensus 224 HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~ii- 302 (579)
T KOG1116|consen 224 HAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLII- 302 (579)
T ss_pred HHHHHHHhhhccccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHH-
Confidence 456788888888999999999999976543 222211 11256789999999999999653 34666641222222222
Q ss_pred HHHHhhhccCCceEEEEecCCC--cchHHHHHhhhc
Q 011540 298 AAHVEVESVENGVGIVKLMGRY--SGFISMYATLAS 331 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR~--~G~LA~~aaLA~ 331 (483)
+.- .+.--++.||.+++. -+||.+.-+|-+
T Consensus 303 --rg~--~t~~dv~~v~~~~~~~~fSfLs~~wGlIA 334 (579)
T KOG1116|consen 303 --RGR--LTPMDVSVVEYAGKDRHFSFLSAAWGLIA 334 (579)
T ss_pred --ccC--CCchheeehhhccCcceEEEEeeeeeeEE
Confidence 111 122348888888876 567766666654
No 253
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=25.10 E-value=5.1e+02 Score=25.59 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=57.7
Q ss_pred CcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC---CccHHHHHHHHHHc
Q 011540 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (483)
Q Consensus 156 apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~ 232 (483)
.|..-...+++++++....+..++.-+..... .-..+.....+.+...|+.+.+..+. ..|+..++..+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~-----~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~ 189 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKKLGAKKVAIVYPDDP-----YGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSA 189 (343)
T ss_dssp S--HHHHHHHHHHHHHHTTTTSEEEEEEESSH-----HHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHHHcCCcEEEEEecCch-----hhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhc
Confidence 45555667777777655456556665543211 01122223344556677777666543 36889999999999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCce
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i 263 (483)
+.|.+++.++-. .+..+.+.+++.+++.
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~~~~~ 217 (343)
T PF13458_consen 190 GPDVVVLAGDPA---DAAAFLRQLRQLGLKP 217 (343)
T ss_dssp TTSEEEEESTHH---HHHHHHHHHHHTTGCS
T ss_pred CCCEEEEeccch---hHHHHHHHHHhhcccc
Confidence 999966665322 2333445556666654
No 254
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.09 E-value=1.7e+02 Score=26.85 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHc--CCcEEEEEcCCCchHH-HHHHHHHHHHcCCcee
Q 011540 221 DTNKIVDNIEDR--GINQVYIIGGDGTQKG-AALIYKEVEKRGLQVA 264 (483)
Q Consensus 221 d~~~i~~~l~~~--~Id~LvvIGGdgS~~~-A~~L~~~~~~~g~~i~ 264 (483)
+.+++.+.+++. .+.++.+-||. .+.. ...|.+++++.|+++.
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEE
Confidence 445566655555 57899999999 5433 5577777777776643
No 255
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=25.09 E-value=2.2e+02 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCcEEEEE-----cCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 224 KIVDNIEDRGINQVYII-----GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvI-----GGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
..++..-.+|.|-.+.| +|.+++.+|..|++.+++.++++-+.|- .|+|.|-
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~t 127 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYA 127 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCC
Confidence 45555567889977777 4668999999999999888888877774 5566554
No 256
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=25.01 E-value=4.4e+02 Score=24.20 Aligned_cols=136 Identities=17% Similarity=0.263 Sum_probs=71.0
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeec-cChhHHhchhccCc-ccccccCCCccHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLT-LSPKVVNDIHKRGG-TILRTSRGGHDTN 223 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~-L~~~~v~~i~~~GG-s~LGTsR~~~d~~ 223 (483)
-|.+++-|||.. ...+..++.+...+.+|+.+...++=++..-+.+ -.++....|...|| |-|-. =+....+
T Consensus 2 ~VLL~n~G~P~~-----~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~-~t~~q~~ 75 (159)
T cd03411 2 AVLLVNLGGPES-----LEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGGGSPLNE-ITRAQAE 75 (159)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCCCCccHH-HHHHHHH
Confidence 356777899998 5556666666667777877765542222221121 22345567788876 32200 0012345
Q ss_pred HHHHHHHHcCCcEEEEEc---CCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIG---GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIG---GdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
++.+.|++...+..+.+| |.-+. ....+++.+.|.+ .++.+|- .--..+....|+++.+.+++.
T Consensus 76 ~l~~~L~~~~~~~~v~~amry~~P~i---~~~l~~l~~~g~~-~iivlPl------~P~~S~~Tt~s~~~~~~~~~~ 142 (159)
T cd03411 76 ALEKALDERGIDVKVYLAMRYGPPSI---EEALEELKADGVD-RIVVLPL------YPQYSASTTGSYLDEVERALK 142 (159)
T ss_pred HHHHHHhccCCCcEEEehHhcCCCCH---HHHHHHHHHcCCC-EEEEEEC------CcccccccHHHHHHHHHHHHH
Confidence 555666655444555554 22222 2233445556764 6888884 222334445555655555443
No 257
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=24.93 E-value=5.5e+02 Score=24.70 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=44.8
Q ss_pred EEEEEccccccccc---------CCeeccChhHHhchhccCcc-cccccCCC--ccHHHHHHHHHHcCCcEEEEEcCCCc
Q 011540 178 EILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGT-ILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 178 ~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs-~LGTsR~~--~d~~~i~~~l~~~~Id~LvvIGGdgS 245 (483)
.++|+-.|..=+++ |++=-++++..+.+.. .|. ++--...+ -|++++++.+.+++.+-++++|+.|.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~-~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKK-AGVKIIVFPPEKDTTDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHH-cCCceEEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 68899999866654 3343455555554443 343 23222222 37899999999999999999999986
No 258
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=24.78 E-value=1e+02 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=24.6
Q ss_pred hhccCCceEEEEecCC-CcchHHHHHhhhcCCCcEEe
Q 011540 303 VESVENGVGIVKLMGR-YSGFISMYATLASRDVDCCL 338 (483)
Q Consensus 303 A~S~~~rv~iVEvMGR-~~G~LA~~aaLA~~~ad~vl 338 (483)
.....++|++|=|||- |.||+++.-.-.. .+|.++
T Consensus 17 ~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~-~~d~VV 52 (285)
T COG0414 17 LRKEGKRVGLVPTMGNLHEGHLSLVRRAKK-ENDVVV 52 (285)
T ss_pred HHHcCCEEEEEcCCcccchHHHHHHHHHhh-cCCeEE
Confidence 3334578999999997 8899997654333 566544
No 259
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.62 E-value=2e+02 Score=29.07 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
..++.++.+++.|+|++++. |=.+..+..+.+.++++|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46889999999999999995 66788888899999999987544455543
No 260
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.52 E-value=3.9e+02 Score=28.48 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee-cccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
..-.+++.+++.--+..++.|.-.|..++..|.+. |.+.--||| |.+|.-==.-+-.-.+--||+...+++...
T Consensus 137 ~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~a----GAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~- 211 (346)
T PRK05096 137 HFVQFVAKAREAWPDKTICAGNVVTGEMVEELILS----GADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHG- 211 (346)
T ss_pred HHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHc----CCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHH-
Confidence 34566777777655655666666788888887653 666544665 665543222221122345565555554331
Q ss_pred HHhhhccCCceEEEEecC-CCcchHHHHHhhhcCCCcEEecC
Q 011540 300 HVEVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIP 340 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG-R~~G~LA~~aaLA~~~ad~vlIP 340 (483)
.++.||===| |++|.++-+ ||. |||.|.+-
T Consensus 212 --------~gvpiIADGGi~~sGDI~KA--laa-GAd~VMlG 242 (346)
T PRK05096 212 --------LGGQIVSDGGCTVPGDVAKA--FGG-GADFVMLG 242 (346)
T ss_pred --------cCCCEEecCCcccccHHHHH--HHc-CCCEEEeC
Confidence 2343443222 688999864 445 78988865
No 261
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=24.50 E-value=6.8e+02 Score=24.54 Aligned_cols=106 Identities=19% Similarity=0.314 Sum_probs=55.7
Q ss_pred EccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccc-----cccCCC---cc
Q 011540 150 VTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL-----RTSRGG---HD 221 (483)
Q Consensus 150 vtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~L-----GTsR~~---~d 221 (483)
|.||+ +-|+..+.... +.. .++..|--+-.|..-.+.. -+++..+.+...||.+| ++.... ..
T Consensus 77 IVSG~-A~GiD~~ah~~---al~-~~g~tIaVl~~gld~~yp~----~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~ 147 (220)
T TIGR00732 77 IVSGL-ALGIDGIAHKA---ALK-VNGRTIAVLGTGLDQIYPR----QNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPK 147 (220)
T ss_pred EEcCc-hhhHHHHHHHH---HHH-cCCCEEEEECCCCccCCch----hhHHHHHHHHHcCCEEEEecCCCCCCCcccHHH
Confidence 34444 55655433222 222 3454554445555433322 24455666777787655 111111 13
Q ss_pred HHHHHHHHHHcCCcEEEEEcC---CCchHHHHHHHHHHHHcCCceeEeeecccccC
Q 011540 222 TNKIVDNIEDRGINQVYIIGG---DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGG---dgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDN 274 (483)
+.+++..|- +++|+++. .||+.+|.. +.++| -+|..+|..|++
T Consensus 148 RNriia~ls----~~vivve~~~~sGtl~ta~~----A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 148 RNRIISGLS----RAVLVVEAPLKSGALITARY----ALEQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHhc----CEEEEEECCCCCchHHHHHH----HHHhC--CcEEEEcCCCCC
Confidence 455555543 67888887 466665553 33345 468999998875
No 262
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=24.11 E-value=1.4e+02 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=30.5
Q ss_pred HHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
+...+.+++++-||.++-.......+.++....++||.|| |+|++.-..
T Consensus 39 ~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlia~ 87 (193)
T PRK08857 39 IEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGV-------------CLGHQAIAQ 87 (193)
T ss_pred HhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEE-------------cHHHHHHHH
Confidence 4567789999999998765321111222222235778888 999886443
No 263
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=24.05 E-value=73 Score=29.90 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=29.6
Q ss_pred HHHcCCcEEEEEcCCCchHH--HHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 229 IEDRGINQVYIIGGDGTQKG--AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~~~--A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
+.++++|+|++-||..+... ...+.+.+.+. ++|+.|| |+|++.-...
T Consensus 37 ~~~~~~~glii~Gg~~~~~~~~~~~~i~~~~~~--~~PilGI-------------C~G~Qll~~~ 86 (188)
T TIGR00888 37 IREKNPKGIILSGGPSSVYAENAPRADEKIFEL--GVPVLGI-------------CYGMQLMAKQ 86 (188)
T ss_pred HhhcCCCEEEECCCCCCcCcCCchHHHHHHHhC--CCCEEEE-------------CHHHHHHHHh
Confidence 34566789999999876442 22232332222 3567777 9999876543
No 264
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.97 E-value=7.9e+02 Score=25.16 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHHHHhC----CCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC---ccHHHHHHHH
Q 011540 157 PGINTVIREIVCGLSYMY----GVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNI 229 (483)
Q Consensus 157 pGmNavIr~iv~~~~~~~----~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~---~d~~~i~~~l 229 (483)
|......+.+++.+.+.. +..+|.-+..-+. +. ..+-....+.+...|+.+.+..+.+ .|+...+..+
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i 191 (351)
T cd06334 117 PTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--FG---KEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQI 191 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--cc---hhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHH
Confidence 344455566666665433 3456665543211 11 1111112233456677777776653 5889999999
Q ss_pred HHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEee
Q 011540 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (483)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~Vvg 267 (483)
+..+-|+|++.+-.. .+..+.+.+++.|++.++++
T Consensus 192 ~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 192 RRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred HHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEE
Confidence 999999998765443 23345566677788766654
No 265
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.96 E-value=5.1e+02 Score=25.38 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCC---------chHHHHHHHHHHHHcCCceeEeee
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDG---------TQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdg---------S~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+++.++.++++|++++=+-..+. +-..+..|.+.++++|+.++.++.
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~ 73 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCL 73 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEec
Confidence 467777777777777775432110 223456666667777776655543
No 266
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.91 E-value=5.2e+02 Score=23.57 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=48.4
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChh-HHhchhccCccccccc-CC---Cc
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILRTS-RG---GH 220 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~v~~i~~~GGs~LGTs-R~---~~ 220 (483)
+|-+-+.||+.=-+..-+ +..+.+.++ .+|+ +.|. ..+++ .++.....+-.++|-| .. ..
T Consensus 3 ~vvigtv~~D~HdiGk~i---v~~~l~~~G-feVi-----~LG~------~v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKI---LDHAFTNAG-FNVV-----NLGV------LSPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred eEEEEEecCChhhHhHHH---HHHHHHHCC-CEEE-----ECCC------CCCHHHHHHHHHHcCCCEEEEecccccCHH
Confidence 677777888875444322 222222333 4665 2332 22333 3445555555555533 32 24
Q ss_pred cHHHHHHHHHHcCC-cEEEEEcCCCch
Q 011540 221 DTNKIVDNIEDRGI-NQVYIIGGDGTQ 246 (483)
Q Consensus 221 d~~~i~~~l~~~~I-d~LvvIGGdgS~ 246 (483)
.+.++++.|++.++ +..+++||.-..
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~vi 94 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLVV 94 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcCc
Confidence 67889999999998 556778997543
No 267
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.83 E-value=7.7e+02 Score=24.94 Aligned_cols=128 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-------------CcCChhhH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-------------KSFGFDTA 288 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-------------~S~GfdTA 288 (483)
+++..+.++....=.-|+..|+-+......+.+.+.+.|.++-=+||| ++| .++--.+-
T Consensus 4 i~~~f~~~~~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiP--------fSDP~aDGpvIq~a~~rAL~~g~~ 75 (263)
T CHL00200 4 ISNVFEKLDKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIP--------YSDPLADGPIIQEASNRALKQGIN 75 (263)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCC--------CCCCCccCHHHHHHHHHHHHcCCC
Q ss_pred HHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHH------HHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh
Q 011540 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIS------MYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE 362 (483)
Q Consensus 289 ~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA------~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~ 362 (483)
++.+-+.+..++.. ...+ +| +|+=+-=..+ +.-+-.+ |+|.++||-.|+... +.+.+..++
T Consensus 76 ~~~~~~~~~~~r~~-~~~p----~v-lm~Y~N~i~~~G~e~F~~~~~~a-GvdgviipDLP~ee~------~~~~~~~~~ 142 (263)
T CHL00200 76 LNKILSILSEVNGE-IKAP----IV-IFTYYNPVLHYGINKFIKKISQA-GVKGLIIPDLPYEES------DYLISVCNL 142 (263)
T ss_pred HHHHHHHHHHHhcC-CCCC----EE-EEecccHHHHhCHHHHHHHHHHc-CCeEEEecCCCHHHH------HHHHHHHHH
Q ss_pred cCCeEEEE
Q 011540 363 NGHMVIVV 370 (483)
Q Consensus 363 ~~~~vIVv 370 (483)
.|-..|..
T Consensus 143 ~gi~~I~l 150 (263)
T CHL00200 143 YNIELILL 150 (263)
T ss_pred cCCCEEEE
No 268
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.80 E-value=5.6e+02 Score=27.70 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=104.6
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccc-----------------cCCeeccChhHHhchhccC-
Q 011540 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-----------------SKNTLTLSPKVVNDIHKRG- 209 (483)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-----------------~~~~~~L~~~~v~~i~~~G- 209 (483)
.|+++.|-.|||.-+|+++++ ++..|+--.-=|.-|+ ++.-.+++.+.++.-...+
T Consensus 85 ~i~~~p~VVpgi~~~I~~~T~------~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~ 158 (388)
T COG1168 85 WIVFVPGVVPGISLAIRALTK------PGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER 158 (388)
T ss_pred eEEEcCcchHhHHHHHHHhCc------CCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC
Confidence 488999999999999999864 2233332211122221 2233456666666443333
Q ss_pred -cccccc--------cCCCccHHHHHHHHHHcCCc-------EEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 210 -GTILRT--------SRGGHDTNKIVDNIEDRGIN-------QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 210 -Gs~LGT--------sR~~~d~~~i~~~l~~~~Id-------~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
+.+|=+ .=+.+++.++.+-+++||+- +=++.+|. ++..+..|.+.+++ ..++..-.|=-
T Consensus 159 vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~----~~it~~saSKt 233 (388)
T COG1168 159 VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFAD----NSITLTSASKT 233 (388)
T ss_pred ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhc----ceEEEeecccc
Confidence 333323 22356789999999999864 44677776 66666667665533 22333333333
Q ss_pred CCccccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHH
Q 011540 274 NDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLF 353 (483)
Q Consensus 274 NDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~ll 353 (483)
=|++|...|-..-+==+.=+....++.......++ .-|.+|..+|...+ . +++..++
T Consensus 234 FNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n----------~lg~~A~~aAY~~G-~------------~WLd~L~ 290 (388)
T COG1168 234 FNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPS----------ALGIIATEAAYNQG-E------------PWLDELL 290 (388)
T ss_pred ccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCc----------hHHHHHHHHHHHhc-h------------HHHHHHH
Confidence 45666554433222111113334444433333222 34778888887763 1 2455677
Q ss_pred HHHHHHH-------Hhc-CCeEEEEeCCCC
Q 011540 354 EFIERQL-------KEN-GHMVIVVAEGAG 375 (483)
Q Consensus 354 e~I~~rl-------~~~-~~~vIVvaEGa~ 375 (483)
++|+..+ .+. -..-|...||.-
T Consensus 291 ~yl~~N~~~~~~~l~~~~P~v~v~~p~gTY 320 (388)
T COG1168 291 EYLKDNRDYVADFLNKHLPGVKVTEPQGTY 320 (388)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEecCCCce
Confidence 7776432 222 123467778764
No 269
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.78 E-value=9.1e+02 Score=25.81 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHH---HHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~---A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
+.|.+..++++-+.++|+.+--+-.- ...+.++++++ +.++||.|.. +...+.+++-||+.|++.+.+.+..
T Consensus 79 ~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~-~~~pvi~v~t---~gf~g~~~~~G~~~a~~al~~~~~~- 153 (426)
T cd01972 79 DTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDE-IGIPVVALHC---EGFKGKHWRSGFDAAFHGILRHLVP- 153 (426)
T ss_pred HHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHh-hCCCEEEEeC---CccCCccHhHHHHHHHHHHHHHhcC-
Confidence 44555666789999999885533222 12233333322 3456776652 3344446678888888776553321
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCC-CCCChhhHHHHHHHHHHhcCCeEEEEe-CCCCch
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF-YLEGPGGLFEFIERQLKENGHMVIVVA-EGAGQE 377 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f-~l~~~~~lle~I~~rl~~~~~~vIVva-EGa~~~ 377 (483)
.... ......+-+|++.+. +..+ .+.++.|++-+++-|.-++.+- .|..-.
T Consensus 154 --~~~~------------------------~~~~~~VNliG~~~~~~~~~-~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ 206 (426)
T cd01972 154 --PQDP------------------------TKQEDSVNIIGLWGGPERTE-QEDVDEFKRLLNELGLRVNAIIAGGCSVE 206 (426)
T ss_pred --CCCC------------------------CCCCCCEEEEccCCCccccc-cccHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 0000 000224556676654 2221 2456678888887786665444 445422
Q ss_pred hhhccCCccccccccCCccch-hHHHHHHHHHHhhcc
Q 011540 378 FVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKDHFT 413 (483)
Q Consensus 378 ~~~~~~~~~~~~D~~Gn~~l~-~ig~~La~~I~e~~~ 413 (483)
-+. .-.++.-|+.+. ..+..+++.++++++
T Consensus 207 ei~------~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 207 ELE------RASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred HHH------hcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 211 113566666665 467889999998876
No 270
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=23.67 E-value=1.3e+02 Score=26.87 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
+.+.+.+.+++++||.+++-=-+.......++.+++++.+.+ |-.||
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~--v~~vP 175 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVR--VRVVP 175 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-E--EEE--
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCE--EEEeC
Confidence 356788889999999999998888888888888988877755 44444
No 271
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=23.63 E-value=5.1e+02 Score=28.19 Aligned_cols=100 Identities=25% Similarity=0.316 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee-cccccCCccccCCcCChh--hHHHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFD--TAVEEAQRAINA 298 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-PkTIDNDi~gtD~S~Gfd--TA~~~~~~~i~~ 298 (483)
..+.++.+++.-.+..++.|+--|...|..+.+. |.+.-.||+ |.+|.-.-..++ +|.. ||+..+.+++.
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a----Gad~i~vg~g~G~~~~t~~~~~--~g~p~~~~i~~~~~~~~- 324 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA----GADGLRVGIGPGSICTTRIVAG--VGVPQITAVYDVAEYAA- 324 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh----CCCEEEECCCCCcCCccceecC--CCccHHHHHHHHHHHHh-
Confidence 4555666666545777777777788888877653 777555665 766643222111 3333 44444443332
Q ss_pred HHHhhhccCCceEEEEecC--CCcchHHHHHhhhcCCCcEEecC
Q 011540 299 AHVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 340 (483)
Q Consensus 299 i~~~A~S~~~rv~iVEvMG--R~~G~LA~~aaLA~~~ad~vlIP 340 (483)
. .++-++ ..| |+.|.++- ||+. ||+.|.+-
T Consensus 325 ------~--~~vpvi-adGGi~~~~di~k--Ala~-GA~~V~~G 356 (450)
T TIGR01302 325 ------Q--SGIPVI-ADGGIRYSGDIVK--ALAA-GADAVMLG 356 (450)
T ss_pred ------h--cCCeEE-EeCCCCCHHHHHH--HHHc-CCCEEEEC
Confidence 1 123332 334 56677764 4555 78887764
No 272
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=23.54 E-value=2.6e+02 Score=30.49 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=57.3
Q ss_pred eEEEEccCCCCcchh-HHHHHHHHHHHHhCCCcEEEEEc-ccccccccCC-eeccChhHHhchh-------ccCcc--cc
Q 011540 146 RACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIE-GGYRGFYSKN-TLTLSPKVVNDIH-------KRGGT--IL 213 (483)
Q Consensus 146 ~iaIvtsGG~apGmN-avIr~iv~~~~~~~~~~~V~Gi~-~G~~GL~~~~-~~~L~~~~v~~i~-------~~GGs--~L 213 (483)
-|+|+++ ..+++. .=|.++++.+...++...|+.+. .||.|-.... +.......++.+. ...++ +|
T Consensus 128 ~I~V~st--C~~~lIGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNii 205 (457)
T TIGR01284 128 RMYTYAT--CTTALIGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLI 205 (457)
T ss_pred eEEEECC--ChHHhhccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEE
Confidence 3555543 555543 23555666565556534566664 7888732211 1000000111111 01222 56
Q ss_pred cccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHH
Q 011540 214 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251 (483)
Q Consensus 214 GTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~ 251 (483)
|......|..++.+.|++.||+.+-.+.|+.|+..-..
T Consensus 206 G~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~ 243 (457)
T TIGR01284 206 GEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRW 243 (457)
T ss_pred ccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHh
Confidence 65444568889999999999999988888887655433
No 273
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.50 E-value=77 Score=27.65 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=52.6
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccC--CCccH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGHDT 222 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR--~~~d~ 222 (483)
|||.|+=+||-- | ++...+.+...+.+||.+.. =-|.. -++.+. ...|.
T Consensus 1 MkVLviGsGgRE---H----Aia~~l~~s~~v~~v~~aPG-N~G~~---------------------~~~~~~~~~~~d~ 51 (100)
T PF02844_consen 1 MKVLVIGSGGRE---H----AIAWKLSQSPSVEEVYVAPG-NPGTA---------------------ELGKNVPIDITDP 51 (100)
T ss_dssp EEEEEEESSHHH---H----HHHHHHTTCTTEEEEEEEE---TTGG---------------------GTSEEE-S-TT-H
T ss_pred CEEEEECCCHHH---H----HHHHHHhcCCCCCEEEEeCC-CHHHH---------------------hhceecCCCCCCH
Confidence 588888888642 2 33344444344567775553 11211 122222 24578
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.+++..++++|| |+|||-..-+. .=|++.+++.| |+|+|=
T Consensus 52 ~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~g--i~vfGP 92 (100)
T PF02844_consen 52 EELADFAKENKID-LVVVGPEAPLV--AGLADALRAAG--IPVFGP 92 (100)
T ss_dssp HHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES-
T ss_pred HHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCC--CcEECc
Confidence 9999999999999 67788766554 34677787777 446664
No 274
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=23.46 E-value=6.4e+02 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL 261 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~ 261 (483)
..+.+.+.++++++|+++. +-++.......+.+.+.+.|.
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 4677888888999996554 444444444445555555453
No 275
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=23.33 E-value=6.2e+02 Score=23.83 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=38.3
Q ss_pred chhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCC--ceeEeee
Q 011540 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGI 268 (483)
Q Consensus 204 ~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~--~i~VvgI 268 (483)
.+...|..+...... ..++..+++.+++.+.+++++.+.. ..+..+.+++++.|+ ++++++.
T Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 159 AFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSG---EDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccc---hHHHHHHHHHHHcCCCCCCcEEec
Confidence 344455555443332 2467788888888888888776653 344556666666776 5555554
No 276
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.33 E-value=2.1e+02 Score=29.29 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=44.4
Q ss_pred chhccCcccccccCC---CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 204 ~i~~~GGs~LGTsR~---~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.|...|+.+.+..+. ..|+...+..++.-+-|.++++ +.+. .+..+.+.+++.|++.+++++
T Consensus 171 ~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~--~~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 171 ALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPP--DFATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred HHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCcc--HHHHHHHHHHHCCCCCCeEEE
Confidence 345578888877665 3588999999999999997644 4444 234466677778888777654
No 277
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.26 E-value=7.6e+02 Score=27.29 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCc-eeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~-i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
....+++.+++.-.+..++.|.-.|..++..|.+. |.+ |.|-+=|.||.+-=..++....-.||+-.+++++...
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~----G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA----GANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh----CCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 35677788888766666666556678888888763 665 4466668999877666666555566665555444321
Q ss_pred HHhhhccCCceEEEEecC--CCcchHHHHHhhhcCCCcEEecC
Q 011540 300 HVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 340 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG--R~~G~LA~~aaLA~~~ad~vlIP 340 (483)
++.|| ..| |++|.++-. ||. ||+.|.+-
T Consensus 328 ---------~~~vi-adGgi~~~~di~ka--la~-GA~~vm~g 357 (475)
T TIGR01303 328 ---------GGHVW-ADGGVRHPRDVALA--LAA-GASNVMVG 357 (475)
T ss_pred ---------CCcEE-EeCCCCCHHHHHHH--HHc-CCCEEeec
Confidence 23333 234 567777654 455 78887765
No 278
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.25 E-value=2.5e+02 Score=27.44 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCC--chHHHHHHHHHHHHcCCceeEeeecccccCCccccC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdg--S~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD 280 (483)
++.+++++.+.+.+-|+++ |||-. +......+.+.+++. .++||+.-|.+.+.=.++-|
T Consensus 11 e~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~~-~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKKI-TNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHhh-cCCCEEEECCCccccCcCCC
Confidence 3466788889999999875 55554 445555566666653 56889989988775544443
No 279
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.23 E-value=6.5e+02 Score=23.85 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=63.7
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHH
Q 011540 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (483)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i 225 (483)
+||++...-.-|=....+.++-+.+.. ++. ++.-+ -+........+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~-------------------------------~~~~~~~~~~~~ 47 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA-LGG-DLRVY-------------------------------DAGGDDAKQADQ 47 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH-cCC-EEEEE-------------------------------CCCCCHHHHHHH
Confidence 467777655566667777777766653 332 22210 011111223456
Q ss_pred HHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc-CCcCChhhHHHHHHHHHHHHHHhhh
Q 011540 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVEVE 304 (483)
Q Consensus 226 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt-D~S~GfdTA~~~~~~~i~~i~~~A~ 304 (483)
++.+...++|++++..++.... ..+.+++.+++ ++||.+ |++.+.. -.+++.|- .+....+.+.+.....
T Consensus 48 l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~~--ipvV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~~~~~ 118 (273)
T cd06305 48 IDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDAG--IPVVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLVKDLG 118 (273)
T ss_pred HHHHHHcCCCEEEEecCChhhh--HHHHHHHHHcC--CCEEEe----cCCCCCCccceeeech-HHHHHHHHHHHHHHhC
Confidence 6677778999999998764321 22234445555 456655 3333221 12455442 1222334444444333
Q ss_pred ccCCceEEEE
Q 011540 305 SVENGVGIVK 314 (483)
Q Consensus 305 S~~~rv~iVE 314 (483)
.+ ++|.++-
T Consensus 119 g~-~~i~~i~ 127 (273)
T cd06305 119 GK-GNVGYVN 127 (273)
T ss_pred CC-CCEEEEE
Confidence 44 4687775
No 280
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=23.08 E-value=2.9e+02 Score=30.31 Aligned_cols=93 Identities=20% Similarity=0.331 Sum_probs=56.7
Q ss_pred CCceEEEEecCCCcchHHHHHhhhcCCC---cEEecCCCCCCCCChhhHHHHHHHHHHhc-C-CeEEEEeCCCCchhhh-
Q 011540 307 ENGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN-G-HMVIVVAEGAGQEFVA- 380 (483)
Q Consensus 307 ~~rv~iVEvMGR~~G~LA~~aaLA~~~a---d~vlIPE~~f~l~~~~~lle~I~~rl~~~-~-~~vIVvaEGa~~~~~~- 380 (483)
.+...|+|+ ..||+.+.+|+-...+ .++|+|+.|- .-.+.|++.+++. | +.-||++.-.+..+-.
T Consensus 89 ~~~~~i~~~---~~g~~~~~agiD~sn~~~~~~~llP~dp~------~sa~~l~~~l~~~~g~~v~vii~Dt~gr~~r~g 159 (448)
T PRK13294 89 KGRTLITEN---RLGLVQAAAGVDASNVPRGELALLPVDPD------ASAAALRAGLRERLGVDVAVVVTDTMGRAWRNG 159 (448)
T ss_pred cCCeEEEEe---cCceEeeccccccccCCCCeEEeCCCChH------HHHHHHHHHHHHHHCCCEEEEEecCCCCccccC
Confidence 456789997 5789988888764332 4678999883 4567788777664 3 4447777655432210
Q ss_pred --------ccC----CccccccccCCccchhHHHHHHHHHH
Q 011540 381 --------QSM----PAVDEKDASGNRLLLDIGLWLTQKIK 409 (483)
Q Consensus 381 --------~~~----~~~~~~D~~Gn~~l~~ig~~La~~I~ 409 (483)
..+ ...++.|.+||.+.... ..++++|.
T Consensus 160 ~~~vaig~~g~~~~~~~~g~~d~~g~~l~~t~-~a~aD~la 199 (448)
T PRK13294 160 QTDAAIGAAGLAVLHDYAGAVDAYGNELVVTE-VAVADEIA 199 (448)
T ss_pred ccceEEEecCChHHHhcCCCcCCCCCEeeeeH-HHHHHHHH
Confidence 000 11356799999865321 34555554
No 281
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=22.57 E-value=95 Score=29.74 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=38.6
Q ss_pred cccccccCCCc-cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540 210 GTILRTSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (483)
Q Consensus 210 Gs~LGTsR~~~-d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA 288 (483)
|.-+-..|..+ .. +.++..+.|++++-||-++-.......+.+++...++||.|| |+|++--
T Consensus 23 g~~v~v~~~~~~~~----~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI-------------ClG~Qll 85 (195)
T PRK07649 23 GQELVVKRNDEVTI----SDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV-------------CLGHQSI 85 (195)
T ss_pred CCcEEEEeCCCCCH----HHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE-------------cHHHHHH
Confidence 44454555432 22 234567899999999999865543232333322335678887 9998765
Q ss_pred HH
Q 011540 289 VE 290 (483)
Q Consensus 289 ~~ 290 (483)
..
T Consensus 86 a~ 87 (195)
T PRK07649 86 AQ 87 (195)
T ss_pred HH
Confidence 54
No 282
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.56 E-value=6.7e+02 Score=23.80 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
...++++.+..+++|++++.+.+.. ......+.+.+.+ +|+|.+
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~--~~~~~l~~~~~~~--ipvV~~ 88 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAK--ALVPPLKEAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChh--hhHHHHHHHHHCC--CCEEEe
Confidence 3456778888899999999876542 1122223334445 556665
No 283
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.56 E-value=6.6e+02 Score=23.72 Aligned_cols=66 Identities=8% Similarity=0.123 Sum_probs=40.6
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHHHH
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~ 226 (483)
|||+...-..|=.+.++.++-..+.. ++ .+++ ++-+........+.+
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYR-QG-YNLI-------------------------------LCNTEGDPERQRSYL 48 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHH-cC-CEEE-------------------------------EEeCCCChHHHHHHH
Confidence 66777655566667777777666643 22 2222 011122223345778
Q ss_pred HHHHHcCCcEEEEEcCCCc
Q 011540 227 DNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS 245 (483)
+.+..+++|++++.+.+..
T Consensus 49 ~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 49 RMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHcCCCEEEEecCCCC
Confidence 8899999999999997755
No 284
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.51 E-value=1.3e+02 Score=30.86 Aligned_cols=42 Identities=26% Similarity=0.459 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..++++.|.++++++|++-.---| |..|. +++ ..+++|||||
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTAS---a~al~-~LR-~~~~iPVvGv 97 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTAS---AVALE-DLR-EKFDIPVVGV 97 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchHH---HHHHH-HHH-HhCCCCEEEe
Confidence 468899999999999998763222 22232 222 3467889997
No 285
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=22.31 E-value=1.6e+02 Score=32.44 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCc--hHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHhhhcc
Q 011540 233 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 233 ~Id~LvvIGGdgS--~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~ 306 (483)
.-|+++|-||+|+ ..+...-++++++. ++|..|| |+|.+-|+=+.++.+-.+. +|.|+
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen--~iP~LGi-------------CLGmQ~AvIEfaRnvLg~~-dAnSt 422 (585)
T KOG2387|consen 363 SADGILVPGGFGDRGVEGKILAAKWAREN--KIPFLGI-------------CLGMQLAVIEFARNVLGLK-DANST 422 (585)
T ss_pred cCCeEEeCCcccccchhHHHHHHHHHHhc--CCCeEee-------------ehhhhHHHHHHHHHhhCCC-CCCcc
Confidence 4899999999998 33444445555543 3455555 9999999988877776554 55554
No 286
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=22.09 E-value=1.5e+02 Score=30.19 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=38.6
Q ss_pred ccCCC--ccHHHHHHHHHHcCCcEEEEEcCCCc------------hHHHHHHHHHHHHc---CCceeEeeec
Q 011540 215 TSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT------------QKGAALIYKEVEKR---GLQVAVAGIP 269 (483)
Q Consensus 215 TsR~~--~d~~~i~~~l~~~~Id~LvvIGGdgS------------~~~A~~L~~~~~~~---g~~i~VvgIP 269 (483)
|+|.. ..++..+..+...||+.+++++||-. +..|..|.+.+++. .+.|-+.+-|
T Consensus 67 tcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~P 138 (281)
T TIGR00677 67 TCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYP 138 (281)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECC
Confidence 45542 45778888889999999999999983 24466676766553 2555666666
No 287
>PLN00197 beta-amylase; Provisional
Probab=21.96 E-value=6.2e+02 Score=28.74 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCcEEEE------Ec--CCC--chHHHHHHHHHHHHcCCceeEee----------------ecccc---
Q 011540 222 TNKIVDNIEDRGINQVYI------IG--GDG--TQKGAALIYKEVEKRGLQVAVAG----------------IPKTI--- 272 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~Lvv------IG--Gdg--S~~~A~~L~~~~~~~g~~i~Vvg----------------IPkTI--- 272 (483)
+..=+..||..|+|++.+ += |.+ -..+=.+|++.+++.|+++.+|. +|+=+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~ 208 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEE 208 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556677888899998864 22 322 24556778888888898887762 55443
Q ss_pred ---cCCccccCC---------cCChh--------hHHHHHHHHHHHHHHhhhcc-CCceEEEEecC
Q 011540 273 ---DNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV-ENGVGIVKLMG 317 (483)
Q Consensus 273 ---DNDi~gtD~---------S~Gfd--------TA~~~~~~~i~~i~~~A~S~-~~rv~iVEvMG 317 (483)
|.||..||. |+|.| |+++.+.+....-+++-..- ..-|-=|++=.
T Consensus 209 g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGl 274 (573)
T PLN00197 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGM 274 (573)
T ss_pred hccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEecc
Confidence 448999985 89998 55999999999888776553 33344444433
No 288
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=21.84 E-value=2.5e+02 Score=28.05 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=25.0
Q ss_pred cChhHHhchhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCC
Q 011540 197 LSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD 243 (483)
Q Consensus 197 L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGd 243 (483)
+....++.+...||..+--.+...+.+...+.+.. +|+|++.||.
T Consensus 27 ~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~--~DGlil~GG~ 71 (254)
T PRK11366 27 LQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPK--LDGIYLPGSP 71 (254)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHh--CCEEEeCCCC
Confidence 34445667777788644333332222222233333 9999999984
No 289
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.83 E-value=1.1e+03 Score=25.80 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=77.7
Q ss_pred HHHHHHHHHc-CCcEEEEEcCCCchHHH---HHHHHHHHHcCCc-eeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 223 NKIVDNIEDR-GINQVYIIGGDGTQKGA---ALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 223 ~~i~~~l~~~-~Id~LvvIGGdgS~~~A---~~L~~~~~~~g~~-i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
+.|.+..+++ +..+++|++.--+-... ..+.++++++ ++ ++||.|+ ..+..+..++-||+.|.+.+.+.+
T Consensus 114 ~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~-~~~~pvv~v~---t~gf~g~s~~~G~~~a~~al~~~l- 188 (457)
T TIGR01284 114 RCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEE-IPDVDVFAIN---APGFAGPSQSKGHHVANITWINDK- 188 (457)
T ss_pred HHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHh-cCCCeEEEee---CCCcCCcccchHHHHHHHHHHHHH-
Confidence 3455555667 58889998854332221 1122223222 33 6788776 334444455678888887654322
Q ss_pred HHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEE-EEeCCCCc
Q 011540 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI-VVAEGAGQ 376 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vI-VvaEGa~~ 376 (483)
........ .. .-.+-+|++. ... +.++.|++-+++-|.-++ +...+..-
T Consensus 189 --~~~~~~~~----------------------~~-~~~VNiiG~~--~~~---gd~~el~~lL~~~Gl~v~~~~~g~~s~ 238 (457)
T TIGR01284 189 --VGTAEPEI----------------------TT-EYDVNLIGEY--NIQ---GDLWVLKKYFERMGIQVLSTFTGNGCY 238 (457)
T ss_pred --hCccCccc----------------------CC-CCeEEEEccC--Cch---hhHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 11110000 00 1234455643 222 456778877777776664 55555432
Q ss_pred hhhhccCCccccccccCCccch-hHHHHHHHHHHhhccC
Q 011540 377 EFVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKDHFTK 414 (483)
Q Consensus 377 ~~~~~~~~~~~~~D~~Gn~~l~-~ig~~La~~I~e~~~~ 414 (483)
+-+.. -.++.-|..+. ..+..+++.++++++.
T Consensus 239 ~ei~~------~~~A~lniv~~~~~~~~~A~~Le~~~Gi 271 (457)
T TIGR01284 239 DELRW------MHRAKLNVVRCARSANYIANELEERYGI 271 (457)
T ss_pred HHHHh------ccccCEEEEEChHHHHHHHHHHHHHhCC
Confidence 11111 12344455443 4567788888888763
No 290
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=21.54 E-value=72 Score=32.12 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
...++++.++..+.|.++-+||-=...-+...+.. .+++.+.||-+.+||=
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDG 113 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecccccccc
Confidence 45677778877899999999996656555555433 3478999999999994
No 291
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.49 E-value=9.3e+02 Score=25.03 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=87.7
Q ss_pred EEEccCCCCcchhH-HHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccccc-----CC-Cc
Q 011540 148 CIVTCGGLCPGINT-VIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-----RG-GH 220 (483)
Q Consensus 148 aIvtsGG~apGmNa-vIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTs-----R~-~~ 220 (483)
-|+.+||+.=-++. .+..++..+.. .+ .+.+++-|.+.... ....+|.+.++.+...|=..+..+ +. .+
T Consensus 162 eV~lsGGDPLl~~d~~L~~ll~~L~~-i~--~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~ 237 (331)
T TIGR00238 162 EILISGGDPLMAKDHELEWLLKRLEE-IP--HLVRLRIGTRLPVV-IPQRITDELCELLASFELQLMLVTHINHCNEITE 237 (331)
T ss_pred EEEEECCccccCCHHHHHHHHHHHHh-cC--CccEEEeecCCCcc-CchhcCHHHHHHHHhcCCcEEEEccCCChHhCCH
Confidence 57888998432332 47777777753 22 34455554443211 123356666665555442222122 11 23
Q ss_pred cHHHHHHHHHHcCCc----EEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc--CCccccCCcCChhhHHHHHHH
Q 011540 221 DTNKIVDNIEDRGIN----QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID--NDIAVIDKSFGFDTAVEEAQR 294 (483)
Q Consensus 221 d~~~i~~~l~~~~Id----~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID--NDi~gtD~S~GfdTA~~~~~~ 294 (483)
...+.++.|++.|+. ..+.=|=++.......|.+.+.+.|.. |=.+. ..+.+. =-|.+-.+.+.+
T Consensus 238 ~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~~~~g~---~~f~~~~~~~~~ 308 (331)
T TIGR00238 238 EFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLDKVQGA---KHFLVPDAEAAQ 308 (331)
T ss_pred HHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcCCCCCc---ccccCCHHHHHH
Confidence 456777888888875 345667788888777788776655432 11111 111222 347888888888
Q ss_pred HHHHHHHhhhccCCceEEEEecC
Q 011540 295 AINAAHVEVESVENGVGIVKLMG 317 (483)
Q Consensus 295 ~i~~i~~~A~S~~~rv~iVEvMG 317 (483)
.+..++.-.++.----+++|+.|
T Consensus 309 i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 309 IVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHhcCCCCcceeEEecCCC
Confidence 88877665554433467777765
No 292
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=21.41 E-value=1.7e+02 Score=28.09 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=36.2
Q ss_pred EecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC--hhhHHHHHHHHHHhcCCeEEEEeCC
Q 011540 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 373 (483)
Q Consensus 314 EvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~--~~~lle~I~~rl~~~~~~vIVvaEG 373 (483)
++-|+..=-+++..+|+. .|+++++=|-.-.+|. .+.+.+.+++..++++..+|+++.-
T Consensus 137 ~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 137 ELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 444545555888999998 8999998665444542 2334444443333346677777643
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=21.28 E-value=8.8e+02 Score=25.47 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=21.9
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCC
Q 011540 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP 343 (483)
Q Consensus 308 ~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~ 343 (483)
-.+-|||+-|..-.... ++. .+|++++|..|
T Consensus 149 ~d~viieT~Gv~qs~~~----i~~-~aD~vlvv~~p 179 (332)
T PRK09435 149 YDVILVETVGVGQSETA----VAG-MVDFFLLLQLP 179 (332)
T ss_pred CCEEEEECCCCccchhH----HHH-hCCEEEEEecC
Confidence 35899999998755444 233 58998888654
No 294
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.24 E-value=1.1e+02 Score=25.19 Aligned_cols=26 Identities=31% Similarity=0.624 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKG 248 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~ 248 (483)
+.+.+.|+++++..+++|||.++...
T Consensus 62 ~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 62 SSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred HHHHHHHHHcCCCEEEEECCCCccCH
Confidence 77888889999999999999987643
No 295
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.88 E-value=1.4e+02 Score=32.46 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
.++.++.+.... |.++|.|||||....-- --+++++-..+|--+|.--|
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVVT--Gi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVVT--GIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhhH--HHHhcccccCceeeccCccc
Confidence 455555555555 99999999999865432 22334455566666665444
No 296
>PLN02591 tryptophan synthase
Probab=20.86 E-value=2.6e+02 Score=28.21 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee-cc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PK 270 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI-Pk 270 (483)
..++.++.+++.|+|+|++. |=.+..+..+.+.++++|+.. |..| |.
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~-I~lv~Pt 141 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL-VLLTTPT 141 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE-EEEeCCC
Confidence 46888999999999999999 677888888999999999874 4555 53
No 297
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=20.79 E-value=1.1e+02 Score=27.64 Aligned_cols=58 Identities=14% Similarity=0.343 Sum_probs=39.2
Q ss_pred cChh-HHhchhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHH
Q 011540 197 LSPK-VVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254 (483)
Q Consensus 197 L~~~-~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~ 254 (483)
-+|. .+..|...||.+..-.-++..++.+.+.+++.+=+.|+|+|+.---.-...+++
T Consensus 11 ~~w~~~i~~wK~~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~AD 69 (120)
T PF01994_consen 11 VSWKSYIREWKEKGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVYELAD 69 (120)
T ss_dssp S-HHHHHHC----SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHHSS
T ss_pred CCHHHHHHHhcccCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhCC
Confidence 3454 588899999987766667788999999999889999999999987777777764
No 298
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.73 E-value=3.4e+02 Score=27.96 Aligned_cols=52 Identities=13% Similarity=0.347 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTID 273 (483)
.++++.+..|.+ .+|.++||||--|-.+ .+|++-+++.+.+.-.|-=+.=|+
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 356777777754 5999999999999766 457787777765544444444444
No 299
>PLN02591 tryptophan synthase
Probab=20.67 E-value=6.8e+02 Score=25.19 Aligned_cols=125 Identities=22% Similarity=0.322 Sum_probs=71.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc-cCCccccCCcCChhhHHH------HHHHHHHHHHHhhhccCCc
Q 011540 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI-DNDIAVIDKSFGFDTAVE------EAQRAINAAHVEVESVENG 309 (483)
Q Consensus 237 LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI-DNDi~gtD~S~GfdTA~~------~~~~~i~~i~~~A~S~~~r 309 (483)
-|+..|+-+.....++.+.+.+.|.++-=+|+|=+= ==|=|.+..+ ..-|++ .+-+.+.+++.. . .
T Consensus 6 ~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~rAL~~G~~~~~~~~~~~~~r~~---~--~ 78 (250)
T PLN02591 6 PYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAA--ATRALEKGTTLDSVISMLKEVAPQ---L--S 78 (250)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHhcC---C--C
Confidence 478899999999999888888889888778888420 0000111111 222332 334444444421 1 1
Q ss_pred eEEEEecCCCc-----chHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCC-eEEEEeCCCC
Q 011540 310 VGIVKLMGRYS-----GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH-MVIVVAEGAG 375 (483)
Q Consensus 310 v~iVEvMGR~~-----G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~-~vIVvaEGa~ 375 (483)
+=+| +|+=+- |.=.....++..|+|-++||.-|+. +. +.+.++.++.|- -|.+++-...
T Consensus 79 ~p~i-lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~e-----e~-~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 79 CPIV-LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLE-----ET-EALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred CCEE-EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHH-----HH-HHHHHHHHHcCCeEEEEeCCCCC
Confidence 3345 888544 4333333334448999999988862 12 334455666664 4556766654
No 300
>PRK15447 putative protease; Provisional
Probab=20.67 E-value=1.6e+02 Score=30.29 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=18.9
Q ss_pred HHHHHhhhcCCCcEEecCCCCCCC
Q 011540 323 ISMYATLASRDVDCCLIPESPFYL 346 (483)
Q Consensus 323 LA~~aaLA~~~ad~vlIPE~~f~l 346 (483)
.+.+++++..+||.||++|..|.+
T Consensus 18 ~~~~~~~~~~gaDaVY~g~~~~~~ 41 (301)
T PRK15447 18 RDFYQRAADSPVDIVYLGETVCSK 41 (301)
T ss_pred HHHHHHHHcCCCCEEEECCccCCC
Confidence 457778876689999999987554
No 301
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=20.58 E-value=72 Score=31.07 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAAL 251 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~ 251 (483)
...++.|+++||| |++||+.|+.-|..
T Consensus 9 p~~~~vf~~~gid--~cc~g~~~l~~a~~ 35 (216)
T TIGR03652 9 PRAARIFRKYGID--FCCGGNVSLAEACK 35 (216)
T ss_pred ccHHHHHHHcCCC--ccCCCcchHHHHHH
Confidence 4567889999999 99999888776543
No 302
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=20.56 E-value=8.4e+02 Score=24.20 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=48.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
..||++...-.-|-...++.++-+.+.. ++ .+++-.. +........+
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HG-YQTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CC-CEEEEec-------------------------------CCCCHHHHHH
Confidence 4789888655567777788888777753 33 2332100 0001111235
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.++.+...++|++++.+-+.+- ...+.+.+.+ +|+|.+
T Consensus 111 ~~~~~~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~ 148 (331)
T PRK14987 111 RLESMLSWNIDGLILTERTHTP----RTLKMIEVAG--IPVVEL 148 (331)
T ss_pred HHHHHHhcCCCEEEEcCCCCCH----HHHHHHHhCC--CCEEEE
Confidence 5677888999999998644332 1223344444 566654
No 303
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=20.49 E-value=1.8e+02 Score=27.94 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=37.8
Q ss_pred EecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC--hhhHHHHHHHHHHhcCCeEEEEeCC
Q 011540 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVAEG 373 (483)
Q Consensus 314 EvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~--~~~lle~I~~rl~~~~~~vIVvaEG 373 (483)
++-|+.-=-+++..+|+. +|+++++=|-.-.+|. ...+.+.|++..++.+.++|+++--
T Consensus 129 ~LS~G~~qrv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 129 QLSGGQRQRVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 555555556888999998 8999998765444542 3345565554434446677776643
No 304
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.43 E-value=2.7e+02 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
++++.+..|. ..+|.++||||-.|-.+. +|++-+++.+.+.-.|-=|.=||-+
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT~-rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNTQ-KLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccHH-HHHHHHHHHCCCEEEECChHHCCHH
Confidence 4677777774 469999999999997664 4777777766555555555555533
No 305
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.28 E-value=6.7e+02 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCcEEEEE-cCCCch
Q 011540 222 TNKIVDNIEDRGINQVYII-GGDGTQ 246 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvI-GGdgS~ 246 (483)
..++-+.+.+.+-|.+++. |+|+..
T Consensus 48 ~~~~~~~l~~~~pd~vii~~G~ND~~ 73 (200)
T cd01829 48 PEKLKELIAEEKPDVVVVFLGANDRQ 73 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCc
Confidence 3456666777888887765 888754
No 306
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=20.22 E-value=5.9e+02 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=30.0
Q ss_pred cccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHH
Q 011540 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGA 249 (483)
Q Consensus 212 ~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A 249 (483)
+||......|..++.+-|++.||+...++.|+.|+...
T Consensus 202 iiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei 239 (456)
T TIGR01283 202 LIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEV 239 (456)
T ss_pred EEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHH
Confidence 56654444578899999999999999999998876554
No 307
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.16 E-value=4.9e+02 Score=24.91 Aligned_cols=90 Identities=12% Similarity=0.230 Sum_probs=64.4
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChh-HHhchhccCcccccccCCCccHHHHH
Q 011540 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILRTSRGGHDTNKIV 226 (483)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~-~v~~i~~~GGs~LGTsR~~~d~~~i~ 226 (483)
+|+..|-...++-..|+.+|+ ++++. |-+.. .-+|. .++.|.. ||....-.-++.....+.
T Consensus 34 gil~~~e~De~v~esv~dVv~----rwGG~--F~v~~-----------~~nw~~~i~~wk~-gG~vvHLTMYG~~i~dv~ 95 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVE----RWGGP--FFVKF-----------GVNWRKVIREWKE-GGIVVHLTMYGLNIDDVI 95 (179)
T ss_pred eEEEcCcccHHHHHHHHHHHH----hcCCC--EEEEE-----------cccHHHHHHHhhc-CCEEEEEEecCCcchhhh
Confidence 566766666788788888885 36763 32322 23555 5788888 997665555566677788
Q ss_pred HHHHHcCCcEEEEEcCCCchHHHHHHHHH
Q 011540 227 DNIEDRGINQVYIIGGDGTQKGAALIYKE 255 (483)
Q Consensus 227 ~~l~~~~Id~LvvIGGdgS~~~A~~L~~~ 255 (483)
+.|++.+=+-|+++|+.---.-+..|+++
T Consensus 96 ~ei~~~~k~~lvvVGaeKVp~evYelADy 124 (179)
T COG1303 96 DEIRESKKDVLVVVGAEKVPGEVYELADY 124 (179)
T ss_pred HHHHhcCCcEEEEEccccCCHHHhhhccc
Confidence 88888888899999999888888888763
No 308
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.04 E-value=1.2e+02 Score=29.73 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHcCCcEEEEEcCCCch----------------HHHHHHHHHHHHcCCc
Q 011540 229 IEDRGINQVYIIGGDGTQ----------------KGAALIYKEVEKRGLQ 262 (483)
Q Consensus 229 l~~~~Id~LvvIGGdgS~----------------~~A~~L~~~~~~~g~~ 262 (483)
+.-.+.|+||+-||.+.+ ..+.+|.+.+.+.|-.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~ 130 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKP 130 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCE
Confidence 344578999999999864 3455666666666643
Done!