Query 011540
Match_columns 483
No_of_seqs 295 out of 1508
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:15:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 1.6E-99 5E-104 803.4 29.9 403 68-481 16-432 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 9.1E-87 3.1E-91 676.1 31.6 295 145-482 2-302 (319)
3 3hno_A Pyrophosphate-dependent 100.0 1E-86 3.5E-91 697.4 30.5 326 144-482 3-359 (419)
4 1pfk_A Phosphofructokinase; tr 100.0 2.1E-86 7.3E-91 673.7 31.2 293 145-480 3-301 (320)
5 4a3s_A 6-phosphofructokinase; 100.0 5.1E-85 1.8E-89 664.2 30.7 295 145-482 2-302 (319)
6 3o8l_A 6-phosphofructokinase, 100.0 9.3E-86 3.2E-90 728.8 25.9 382 70-481 315-728 (762)
7 2f48_A Diphosphate--fructose-6 100.0 3.4E-85 1.2E-89 705.4 27.6 393 80-481 11-487 (555)
8 3o8o_A 6-phosphofructokinase s 100.0 2.2E-85 7.4E-90 726.3 26.1 384 70-482 305-745 (787)
9 3o8o_B 6-phosphofructokinase s 100.0 2.2E-85 7.6E-90 726.1 23.6 380 70-481 305-734 (766)
10 3opy_B 6-phosphofructo-1-kinas 100.0 3.1E-85 1.1E-89 732.7 23.5 384 70-482 483-911 (941)
11 3opy_A 6-phosphofructo-1-kinas 100.0 1.1E-83 3.9E-88 718.5 25.5 383 70-481 510-955 (989)
12 3o8l_A 6-phosphofructokinase, 100.0 7.8E-80 2.7E-84 681.6 30.6 312 143-481 14-353 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 2.1E-77 7.3E-82 662.4 34.2 311 144-481 3-343 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 1.3E-77 4.4E-82 664.2 29.9 312 143-482 4-344 (787)
15 3opy_A 6-phosphofructo-1-kinas 100.0 4.2E-77 1.4E-81 665.7 32.7 312 143-482 209-549 (989)
16 3opy_B 6-phosphofructo-1-kinas 100.0 5E-77 1.7E-81 666.6 32.2 313 143-482 180-522 (941)
17 2an1_A Putative kinase; struct 94.5 0.036 1.2E-06 54.4 5.4 89 145-269 6-94 (292)
18 2i2c_A Probable inorganic poly 92.4 0.057 2E-06 52.8 2.8 45 223-270 18-69 (272)
19 1z0s_A Probable inorganic poly 91.2 0.064 2.2E-06 53.2 1.6 64 222-301 42-122 (278)
20 3g1w_A Sugar ABC transporter; 89.9 12 0.00042 35.1 16.4 175 143-364 3-186 (305)
21 3l49_A ABC sugar (ribose) tran 85.3 16 0.00055 33.9 14.0 128 143-313 4-131 (291)
22 1yt5_A Inorganic polyphosphate 83.3 0.26 9E-06 47.7 0.4 32 232-269 40-71 (258)
23 3kjx_A Transcriptional regulat 83.0 28 0.00095 33.6 15.0 85 144-268 68-153 (344)
24 3dbi_A Sugar-binding transcrip 82.8 20 0.0007 34.4 13.9 124 144-314 61-188 (338)
25 3h5o_A Transcriptional regulat 77.9 35 0.0012 32.8 13.7 85 144-268 62-147 (339)
26 3e3m_A Transcriptional regulat 76.6 42 0.0014 32.5 14.0 84 145-268 71-155 (355)
27 3s4y_A Thiamin pyrophosphokina 76.4 11 0.00037 36.4 9.3 101 136-245 12-134 (247)
28 3egc_A Putative ribose operon 76.2 28 0.00096 32.4 12.2 125 143-314 7-132 (291)
29 3pfn_A NAD kinase; structural 76.1 1.3 4.5E-05 45.4 2.9 123 140-301 34-163 (365)
30 3m9w_A D-xylose-binding peripl 75.7 54 0.0018 30.8 15.4 175 144-363 2-185 (313)
31 3k4h_A Putative transcriptiona 73.9 43 0.0015 30.9 12.8 123 143-315 7-139 (292)
32 1u0t_A Inorganic polyphosphate 73.9 0.9 3.1E-05 45.0 1.0 34 231-269 73-106 (307)
33 3gbv_A Putative LACI-family tr 72.1 23 0.00078 32.9 10.4 184 143-372 7-209 (304)
34 3tb6_A Arabinose metabolism tr 71.1 58 0.002 30.0 12.9 129 145-316 16-146 (298)
35 2qv7_A Diacylglycerol kinase D 69.6 4.9 0.00017 39.9 5.3 52 223-277 70-121 (337)
36 3afo_A NADH kinase POS5; alpha 69.3 1.2 4.2E-05 46.0 0.8 54 232-300 113-169 (388)
37 2bon_A Lipid kinase; DAG kinas 67.5 7.7 0.00026 38.5 6.2 51 224-277 73-125 (332)
38 3kke_A LACI family transcripti 67.2 56 0.0019 30.7 12.1 87 144-270 15-102 (303)
39 3qk7_A Transcriptional regulat 67.1 36 0.0012 31.9 10.6 85 144-268 6-94 (294)
40 3h75_A Periplasmic sugar-bindi 64.8 1E+02 0.0034 29.5 16.0 29 144-172 3-32 (350)
41 3uug_A Multiple sugar-binding 63.8 98 0.0033 29.1 13.1 102 144-286 3-107 (330)
42 1jq5_A Glycerol dehydrogenase; 62.8 9.1 0.00031 38.5 5.7 50 221-275 74-123 (370)
43 3l8m_A Probable thiamine pyrop 61.8 18 0.00062 33.9 7.2 69 176-245 22-101 (212)
44 1dbq_A Purine repressor; trans 60.7 1E+02 0.0035 28.2 13.9 123 144-314 7-133 (289)
45 3rot_A ABC sugar transporter, 58.0 65 0.0022 30.0 10.6 88 144-268 3-92 (297)
46 3s40_A Diacylglycerol kinase; 56.2 11 0.00036 37.0 4.7 87 221-320 52-138 (304)
47 1oj7_A Hypothetical oxidoreduc 55.8 8.6 0.00029 39.4 4.2 56 220-275 93-164 (408)
48 3k94_A Thiamin pyrophosphokina 55.5 36 0.0012 32.1 8.2 69 177-245 25-104 (223)
49 3lkb_A Probable branched-chain 55.3 34 0.0011 33.4 8.3 105 157-270 124-232 (392)
50 3ox4_A Alcohol dehydrogenase 2 54.5 12 0.00042 38.0 5.0 57 220-276 75-144 (383)
51 3uhj_A Probable glycerol dehyd 54.3 13 0.00044 38.0 5.2 52 220-276 93-144 (387)
52 8abp_A L-arabinose-binding pro 53.8 1.1E+02 0.0039 28.1 11.5 87 144-268 2-88 (306)
53 3lm8_A Thiamine pyrophosphokin 53.8 42 0.0014 31.6 8.3 79 177-255 26-120 (222)
54 2dri_A D-ribose-binding protei 51.6 1.1E+02 0.0037 28.0 10.8 139 145-327 2-150 (271)
55 1rrm_A Lactaldehyde reductase; 51.3 14 0.0005 37.2 5.0 57 220-276 75-146 (386)
56 2fep_A Catabolite control prot 51.2 1.5E+02 0.0052 27.3 13.8 123 144-315 16-141 (289)
57 3d8u_A PURR transcriptional re 51.2 1.4E+02 0.0048 27.0 15.3 123 145-315 4-128 (275)
58 1o2d_A Alcohol dehydrogenase, 50.4 8.3 0.00028 39.0 3.0 53 220-272 85-150 (371)
59 3iv7_A Alcohol dehydrogenase I 49.2 16 0.00054 37.0 4.8 51 220-276 75-125 (364)
60 3clk_A Transcription regulator 48.5 1.5E+02 0.0051 27.3 11.4 123 144-314 8-132 (290)
61 2rgy_A Transcriptional regulat 48.0 1.7E+02 0.0058 27.0 14.9 123 144-315 8-136 (290)
62 3hl0_A Maleylacetate reductase 47.7 20 0.0007 36.0 5.4 51 220-276 74-124 (353)
63 3bfj_A 1,3-propanediol oxidore 47.1 20 0.00068 36.2 5.2 57 220-276 79-148 (387)
64 3okf_A 3-dehydroquinate syntha 47.1 6.1 0.00021 40.7 1.4 63 220-288 107-172 (390)
65 3gv0_A Transcriptional regulat 47.1 1.7E+02 0.0059 26.8 13.2 122 144-314 8-134 (288)
66 3rf7_A Iron-containing alcohol 45.8 17 0.00058 37.0 4.5 57 220-276 93-165 (375)
67 3o74_A Fructose transport syst 45.6 1.7E+02 0.0058 26.3 16.5 167 145-363 3-177 (272)
68 3jzd_A Iron-containing alcohol 44.9 21 0.0007 36.1 4.9 48 220-272 76-123 (358)
69 3bil_A Probable LACI-family tr 44.8 2.2E+02 0.0074 27.3 14.6 85 145-269 67-152 (348)
70 2vk2_A YTFQ, ABC transporter p 44.8 82 0.0028 29.4 8.9 86 144-268 2-89 (306)
71 3gyb_A Transcriptional regulat 44.4 1.8E+02 0.0063 26.3 13.4 67 144-245 5-71 (280)
72 3huu_A Transcription regulator 43.0 2E+02 0.0068 26.7 11.4 85 144-268 22-112 (305)
73 3nav_A Tryptophan synthase alp 42.3 1.4E+02 0.0048 28.9 10.2 138 222-374 7-161 (271)
74 1vlj_A NADH-dependent butanol 41.8 18 0.00063 36.9 4.0 57 220-276 88-157 (407)
75 3ipc_A ABC transporter, substr 40.9 59 0.002 31.0 7.3 104 157-269 119-226 (356)
76 2gru_A 2-deoxy-scyllo-inosose 40.8 23 0.00077 35.8 4.4 65 220-290 78-145 (368)
77 3fst_A 5,10-methylenetetrahydr 39.9 71 0.0024 31.6 7.8 88 178-269 54-153 (304)
78 3vnd_A TSA, tryptophan synthas 39.6 1.4E+02 0.0049 28.7 9.8 139 222-375 5-160 (267)
79 3e61_A Putative transcriptiona 38.8 90 0.0031 28.5 8.0 121 144-314 8-129 (277)
80 3o1i_D Periplasmic protein TOR 38.7 1.6E+02 0.0054 27.1 9.8 69 144-245 5-75 (304)
81 3miz_A Putative transcriptiona 38.4 65 0.0022 30.0 7.1 69 144-245 13-82 (301)
82 3cqj_A L-ribulose-5-phosphate 38.4 2.1E+02 0.0072 26.6 10.8 54 217-270 27-89 (295)
83 3brq_A HTH-type transcriptiona 38.4 2.3E+02 0.0078 25.7 13.7 125 144-315 19-147 (296)
84 3l6u_A ABC-type sugar transpor 38.2 2.3E+02 0.008 25.8 12.9 89 143-268 7-95 (293)
85 3kuu_A Phosphoribosylaminoimid 37.9 45 0.0015 30.7 5.5 52 213-271 47-99 (174)
86 2hsg_A Glucose-resistance amyl 37.8 1.2E+02 0.0043 28.6 9.1 124 144-315 60-185 (332)
87 3nyi_A FAT acid-binding protei 37.5 48 0.0017 32.5 6.1 110 195-316 44-171 (297)
88 2pbq_A Molybdenum cofactor bio 37.5 21 0.00071 32.4 3.2 27 219-245 50-80 (178)
89 3ors_A N5-carboxyaminoimidazol 37.4 47 0.0016 30.2 5.5 89 213-327 38-132 (163)
90 2qip_A Protein of unknown func 37.4 58 0.002 28.7 6.1 50 220-272 94-145 (165)
91 2o20_A Catabolite control prot 37.4 2.7E+02 0.0092 26.2 15.5 86 144-269 63-149 (332)
92 1ujn_A Dehydroquinate synthase 37.3 29 0.00099 34.7 4.5 50 220-272 68-120 (348)
93 2fqx_A Membrane lipoprotein TM 37.1 2.8E+02 0.0096 26.4 17.9 23 221-243 50-72 (318)
94 3s81_A Putative aspartate race 36.9 55 0.0019 31.6 6.3 43 220-268 86-128 (268)
95 3td9_A Branched chain amino ac 36.6 1.8E+02 0.0063 27.6 10.2 105 157-269 130-237 (366)
96 3clh_A 3-dehydroquinate syntha 36.1 36 0.0012 33.9 5.0 50 220-272 69-121 (343)
97 3apt_A Methylenetetrahydrofola 35.2 35 0.0012 33.8 4.7 88 178-269 44-150 (310)
98 1xah_A Sadhqs, 3-dehydroquinat 35.0 38 0.0013 33.7 5.0 50 220-272 74-126 (354)
99 2x7x_A Sensor protein; transfe 34.9 2.9E+02 0.0099 25.9 11.5 82 223-314 52-135 (325)
100 1x60_A Sporulation-specific N- 34.4 58 0.002 24.9 5.0 50 213-262 14-72 (79)
101 1uta_A FTSN, MSGA, cell divisi 34.3 54 0.0019 25.4 4.8 52 213-264 14-74 (81)
102 3g85_A Transcriptional regulat 33.9 65 0.0022 29.7 6.2 30 143-172 10-40 (289)
103 2omk_A Hypothetical protein; s 32.9 2.5E+02 0.0084 26.5 10.1 104 148-262 34-152 (231)
104 1qpz_A PURA, protein (purine n 32.6 3.2E+02 0.011 25.8 14.5 122 144-314 58-184 (340)
105 3lp6_A Phosphoribosylaminoimid 32.6 47 0.0016 30.5 4.7 53 213-272 42-95 (174)
106 2fvy_A D-galactose-binding per 32.2 2E+02 0.0068 26.4 9.4 88 145-269 3-91 (309)
107 1iv0_A Hypothetical protein; r 31.8 38 0.0013 27.9 3.6 29 248-276 39-67 (98)
108 3ce9_A Glycerol dehydrogenase; 31.3 20 0.0007 35.6 2.3 52 221-278 77-128 (354)
109 3hs3_A Ribose operon repressor 31.3 45 0.0015 30.9 4.5 118 144-315 10-130 (277)
110 1kq3_A Glycerol dehydrogenase; 31.2 22 0.00075 35.8 2.5 50 221-276 83-132 (376)
111 1usg_A Leucine-specific bindin 31.1 1.9E+02 0.0066 27.0 9.2 61 205-268 162-225 (346)
112 4evq_A Putative ABC transporte 30.9 1.3E+02 0.0045 28.6 8.0 101 159-269 135-239 (375)
113 3trh_A Phosphoribosylaminoimid 30.7 50 0.0017 30.2 4.5 53 213-271 41-93 (169)
114 3ihk_A Thiamin pyrophosphokina 30.6 83 0.0028 29.4 6.3 86 147-245 3-100 (218)
115 2rjo_A Twin-arginine transloca 30.4 1.8E+02 0.006 27.5 8.8 91 144-272 5-98 (332)
116 1ta9_A Glycerol dehydrogenase; 29.8 18 0.00061 37.8 1.6 49 221-275 134-182 (450)
117 3eaf_A ABC transporter, substr 29.2 2.8E+02 0.0097 26.6 10.3 112 156-275 121-238 (391)
118 2nrr_A Uvrabc system protein C 29.1 1.4E+02 0.0047 27.0 7.1 86 219-308 60-153 (159)
119 1vdr_A DHFR, dihydrofolate red 28.7 18 0.00062 32.0 1.2 51 221-278 81-131 (162)
120 2lnd_A De novo designed protei 28.7 1E+02 0.0034 25.1 5.4 59 204-263 22-80 (112)
121 3lop_A Substrate binding perip 28.3 1.5E+02 0.0052 28.2 8.0 101 158-268 124-228 (364)
122 3ksm_A ABC-type sugar transpor 28.1 3.2E+02 0.011 24.4 12.7 90 145-269 1-91 (276)
123 3oow_A Phosphoribosylaminoimid 27.9 47 0.0016 30.3 3.8 53 213-272 40-93 (166)
124 3lkv_A Uncharacterized conserv 27.8 3.9E+02 0.013 25.2 13.3 72 142-241 6-77 (302)
125 2h3h_A Sugar ABC transporter, 27.6 3.7E+02 0.013 24.9 11.2 82 223-316 47-132 (313)
126 2yxb_A Coenzyme B12-dependent 27.5 1.7E+02 0.006 25.6 7.6 88 143-245 17-110 (161)
127 2qru_A Uncharacterized protein 27.5 1.3E+02 0.0043 27.7 7.0 42 284-329 73-115 (274)
128 1pzx_A Hypothetical protein AP 27.5 1.2E+02 0.0042 29.4 7.1 61 195-257 43-108 (289)
129 1sg6_A Pentafunctional AROM po 27.3 52 0.0018 33.4 4.5 50 220-272 87-141 (393)
130 4eyg_A Twin-arginine transloca 27.1 1.4E+02 0.0048 28.3 7.4 101 159-269 123-230 (368)
131 1mgp_A Hypothetical protein TM 26.9 74 0.0025 31.5 5.4 107 137-255 19-133 (313)
132 3lft_A Uncharacterized protein 26.8 3.8E+02 0.013 24.7 11.8 68 144-241 2-70 (295)
133 1cz3_A Dihydrofolate reductase 26.8 23 0.0008 31.3 1.6 48 220-274 80-129 (168)
134 3lp8_A Phosphoribosylamine-gly 25.9 3.1E+02 0.011 27.8 10.2 71 141-239 18-89 (442)
135 3lup_A DEGV family protein; PS 25.0 57 0.002 31.7 4.2 102 143-255 2-109 (285)
136 3jr7_A Uncharacterized EGV fam 24.5 2E+02 0.0069 28.0 8.1 147 145-316 20-183 (298)
137 3brs_A Periplasmic binding pro 24.3 3.5E+02 0.012 24.4 9.5 88 144-268 5-96 (289)
138 1o4v_A Phosphoribosylaminoimid 24.3 52 0.0018 30.5 3.5 53 213-272 48-101 (183)
139 1fa2_A Beta-amylase; TIM barre 24.0 2.9E+02 0.0099 29.3 9.4 85 222-306 36-169 (498)
140 3mel_A Thiamin pyrophosphokina 23.7 82 0.0028 29.6 4.8 90 147-245 3-104 (222)
141 3mjf_A Phosphoribosylamine--gl 23.7 1.4E+02 0.0046 30.4 6.9 39 143-189 2-40 (431)
142 3k9c_A Transcriptional regulat 23.5 2.8E+02 0.0095 25.5 8.6 120 144-315 12-134 (289)
143 3s99_A Basic membrane lipoprot 23.3 3.9E+02 0.013 26.5 10.1 91 142-268 24-116 (356)
144 1u11_A PURE (N5-carboxyaminoim 23.0 58 0.002 30.2 3.5 52 213-271 56-108 (182)
145 3bbl_A Regulatory protein of L 22.9 4.3E+02 0.015 24.0 14.4 85 145-268 5-93 (287)
146 3uhf_A Glutamate racemase; str 22.9 1.5E+02 0.0052 28.7 6.7 101 135-268 15-116 (274)
147 2pn1_A Carbamoylphosphate synt 22.5 4.9E+02 0.017 24.5 11.0 39 221-260 60-98 (331)
148 3td9_A Branched chain amino ac 22.4 4.9E+02 0.017 24.5 11.0 31 142-172 14-46 (366)
149 2g0t_A Conserved hypothetical 22.3 6E+02 0.02 25.4 13.7 134 202-339 136-279 (350)
150 3fij_A LIN1909 protein; 11172J 22.3 2.7E+02 0.0093 26.0 8.3 45 196-244 28-72 (254)
151 4grd_A N5-CAIR mutase, phospho 22.1 73 0.0025 29.2 3.9 53 212-271 46-99 (173)
152 3nkl_A UDP-D-quinovosamine 4-d 21.9 1.2E+02 0.0041 25.1 5.1 45 224-270 56-100 (141)
153 1wdp_A Beta-amylase; (beta/alp 21.9 3.4E+02 0.012 28.8 9.4 85 222-306 35-168 (495)
154 2fn9_A Ribose ABC transporter, 21.6 4.5E+02 0.015 23.8 12.4 86 145-268 3-89 (290)
155 3rg8_A Phosphoribosylaminoimid 21.6 1E+02 0.0035 27.8 4.8 53 213-271 37-90 (159)
156 1xmp_A PURE, phosphoribosylami 21.5 52 0.0018 30.1 2.8 52 213-271 46-98 (170)
157 1nu0_A Hypothetical protein YQ 21.5 66 0.0022 28.1 3.4 26 250-275 43-68 (138)
158 2h4a_A YRAM (HI1655); perplasm 21.4 76 0.0026 31.1 4.3 95 163-268 110-207 (325)
159 1o7j_A L-asparaginase; atomic 21.1 4.6E+02 0.016 25.8 10.0 48 219-268 67-118 (327)
160 3lmz_A Putative sugar isomeras 21.0 3.3E+02 0.011 24.7 8.5 50 220-269 30-83 (257)
161 3hcw_A Maltose operon transcri 20.9 3.5E+02 0.012 24.9 8.8 79 222-316 57-140 (295)
162 3c3k_A Alanine racemase; struc 20.8 4.7E+02 0.016 23.7 12.2 121 144-315 8-132 (285)
163 3ctl_A D-allulose-6-phosphate 20.8 3.2E+02 0.011 25.5 8.4 136 221-361 68-218 (231)
164 2re1_A Aspartokinase, alpha an 20.7 45 0.0016 29.5 2.3 34 307-340 100-138 (167)
165 3pl5_A SMU_165, putative uncha 20.2 1.7E+02 0.0059 28.9 6.6 88 197-296 79-173 (320)
166 3jy6_A Transcriptional regulat 20.2 4.8E+02 0.016 23.5 18.8 125 143-317 6-133 (276)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.6e-99 Score=803.42 Aligned_cols=403 Identities=40% Similarity=0.666 Sum_probs=360.4
Q ss_pred CCCcccccccchhhcCCCC--CCCCCCCCCCcccccccccccccChHHHHHHHhccCC-------CCcccccccCCcccc
Q 011540 68 NDGFVLEDVPHLTNFLPDL--PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-------PRGVHFRRAGPREKV 138 (483)
Q Consensus 68 ~~~~~~eav~~l~~~~p~~--p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~f~~~g~r~~~ 138 (483)
.-.+.++.|+.+.-..|.+ |++++||..|.. ...||.+++.|...+....+. .....|+++|||+++
T Consensus 16 ~~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i 91 (487)
T 2hig_A 16 AHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRI 91 (487)
T ss_dssp CTTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEE
T ss_pred cccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCccee
Confidence 3457788888886666655 778899976654 588999999998765332221 123479999999999
Q ss_pred ccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc---CCeeccChhHHhchhccCcccccc
Q 011540 139 YFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRT 215 (483)
Q Consensus 139 ~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~L~~~~v~~i~~~GGs~LGT 215 (483)
||+++.+||||+||||||||||++||++|+++.+.|+.++||||++||+||++ +++++|+|++|++|+++|||+|||
T Consensus 92 ~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGT 171 (487)
T 2hig_A 92 HFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGS 171 (487)
T ss_dssp SSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCC
T ss_pred eecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeecc
Confidence 99999999999999999999999999999999766777799999999999964 699999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHH
Q 011540 216 SRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (483)
Q Consensus 216 sR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~ 295 (483)
+|++++.++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||+++++++
T Consensus 172 sR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~ea 251 (487)
T 2hig_A 172 SRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQA 251 (487)
T ss_dssp CCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCCeEEEEeCCCC
Q 011540 296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAG 375 (483)
Q Consensus 296 i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~~vIVvaEGa~ 375 (483)
|++|++||.||++||||||+|||+|||||+++|||+++||+|||||+||+++ ++++.|++|++.++|++||||||++
T Consensus 252 Id~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag 328 (487)
T 2hig_A 252 IRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFG 328 (487)
T ss_dssp HHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTT
T ss_pred HHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 9999999999988999999999999999999999993399999999999987 8999999999888999999999997
Q ss_pred chhhhccCCccccccccCCccchhHHHHHHHHHHhhccCc-eeE-EEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHH
Q 011540 376 QEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKV-QKM-MINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVH 453 (483)
Q Consensus 376 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~-~~~-~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~ 453 (483)
+.+... ...+|++||+++++++.+|+++|+++++.. ... .+++|+++|||+|||++|+++||+||++||..||+
T Consensus 329 ~~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~ 404 (487)
T 2hig_A 329 QDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVH 404 (487)
T ss_dssp GGGCCC------CBCTTSCBCCCCHHHHHHHHHHHHHHTTTTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred cccccc----ccccccccCcchhHHHHHHHHHHHHHHhhcCccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHH
Confidence 665432 235799999999999999999999987421 100 13789999999999999999999999999999999
Q ss_pred HHHcCCCceEEEEECCEEEEeehhhhhh
Q 011540 454 GAMAGFTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 454 ~~~~G~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
++++|.||+||++++++++++||++++.
T Consensus 405 ~l~~G~tg~mVgi~~~~i~~vPl~ev~~ 432 (487)
T 2hig_A 405 EAMAGATGCIIAMRHNNYILVPIKVATS 432 (487)
T ss_dssp HHHTTEESEEEEEETTEEEEEEHHHHTT
T ss_pred HHHcCCCCEEEEEECCEEEEEEHHHHHc
Confidence 9999999999999999999999999875
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=9.1e-87 Score=676.12 Aligned_cols=295 Identities=28% Similarity=0.388 Sum_probs=276.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~---- 220 (483)
+||||+||||||||||++||++++++.+ + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4899999999999999999999999863 4 469999999999999999999999999999999999999999863
Q ss_pred -cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 -d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (483)
+++|+||+ ||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++++++ ++|++||||||+.+
T Consensus 154 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 226 (319)
T 1zxx_A 154 RDTASSHH-RVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT-- 226 (319)
T ss_dssp HHHHHHTT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC--
T ss_pred HHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh--
Confidence 99999985 89999999999999999999999 899999999999986 899999999865 68999999999842
Q ss_pred hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G 458 (483)
+.+|+++|+++++ ++.|+.+|||+|||++|+++||.||++||..||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (319)
T 1zxx_A 227 ----------------------ADQFMAELKKYGD------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEG 278 (319)
T ss_dssp ----------------------HHHHHHHHHHSSC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHhhC------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4579999998765 467889999999999999999999999999999999999
Q ss_pred CCceEEEEECCEEEEeehhhhhhc
Q 011540 459 FTGFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 459 ~tg~mvgi~~~~~~~iPi~~v~~~ 482 (483)
++|+||++++++++++||++++..
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~ 302 (319)
T 1zxx_A 279 KGGLAVGIENGKVTSHDILDLFDE 302 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHTTC
T ss_pred CCCEEEEEECCEEEEEEHHHHHhc
Confidence 999999999999999999998753
No 3
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1e-86 Score=697.39 Aligned_cols=326 Identities=18% Similarity=0.266 Sum_probs=284.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCC-CcEEEEEcccccccccCCeecc---ChhHHhchhccCcccccccCCC
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYG-VDEILGIEGGYRGFYSKNTLTL---SPKVVNDIHKRGGTILRTSRGG 219 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~-~~~V~Gi~~G~~GL~~~~~~~L---~~~~v~~i~~~GGs~LGTsR~~ 219 (483)
+.||+|+||||||||||++||++|+.+.+... ..+||||++||+||+++++++| +|++|++|+++|||+|||||++
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~~ 82 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRYK 82 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCCC
Confidence 35999999999999999999999998865322 2399999999999999999888 5569999999999999999975
Q ss_pred c--------cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 220 H--------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 220 ~--------d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
. ++++++++|++++||+||+||||||+++|++|++++++++++++|||||||||||+++||+|||||||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~~ 162 (419)
T 3hno_A 83 LKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKY 162 (419)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHHH
Confidence 3 57899999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCC---ceEEEEecCCCcchHHHHHhhhc----CCCcEEecCCCCCCCCChhhHHHHHHHHHHhcC
Q 011540 292 AQRAINAAHVEVESVEN---GVGIVKLMGRYSGFISMYATLAS----RDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (483)
Q Consensus 292 ~~~~i~~i~~~A~S~~~---rv~iVEvMGR~~G~LA~~aaLA~----~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~ 364 (483)
++++|+++..++.++++ ||||||+|||+|||||+++|||+ .+||+|||||+||+++ ++++.|++++++++
T Consensus 163 ~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~~ 239 (419)
T 3hno_A 163 IAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFG 239 (419)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhCC
Confidence 99999998666655544 89999999999999999999993 2899999999999987 89999999998889
Q ss_pred CeEEEEeCCCCc---hhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCC--CChh
Q 011540 365 HMVIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP--SNGS 439 (483)
Q Consensus 365 ~~vIVvaEGa~~---~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~--p~a~ 439 (483)
|++||||||+.+ +++.+ ...+|+|||++|++++.+|+++|+++++ +++|+.+|||+|||++ |+++
T Consensus 240 ~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g------~~~R~~~lGh~QRgg~p~ps~~ 309 (419)
T 3hno_A 240 YCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLG------LKYHWGVADYLQRAARHIASKT 309 (419)
T ss_dssp CEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHC------CCEEEEECTHHHHSCGGGCBHH
T ss_pred CEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhC------CceEEcccchhhccCCCCCCHH
Confidence 999999999975 33322 2468999999999999999999999986 3578899999999999 8999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCceEEEEECC-------EEEEeehhhhhhc
Q 011540 440 DNIYCTLLAHSAVHGAMAGFTGFTVGPVNS-------RHAYIPIAVSSAS 482 (483)
Q Consensus 440 D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~-------~~~~iPi~~v~~~ 482 (483)
||+||++||..||+++++|.||+||+++++ +++.+||++++..
T Consensus 310 Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~ 359 (419)
T 3hno_A 310 DVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANV 359 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcc
Confidence 999999999999999999999999999997 7999999998753
No 4
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=2.1e-86 Score=673.69 Aligned_cols=293 Identities=28% Similarity=0.409 Sum_probs=275.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~---- 220 (483)
+||||+||||||||||++||++++++.+ ++ .+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~g-~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-EG-LEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-TT-CEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4999999999999999999999999864 44 69999999999999999999999999999999999999999853
Q ss_pred -cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 -d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873 57899999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (483)
+++|+||+ ||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++|+++ ++|++||||||+..
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 227 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD-- 227 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC--
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch--
Confidence 99999986 89999999999999999999999 899999999999986 899999999865 68999999999841
Q ss_pred hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G 458 (483)
+++|+++|+++.+ +++|+..|||+|||++|+++||.||++||..||+++++|
T Consensus 228 ----------------------~~~la~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 279 (320)
T 1pfk_A 228 ----------------------VDELAHFIEKETG------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAG 279 (320)
T ss_dssp ----------------------HHHHHHHHHHHHS------SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHhC------CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999988865 457888999999999999999999999999999999999
Q ss_pred CCceEEEEECCEEEEeehhhhh
Q 011540 459 FTGFTVGPVNSRHAYIPIAVSS 480 (483)
Q Consensus 459 ~tg~mvgi~~~~~~~iPi~~v~ 480 (483)
++|+||++++++++++||++++
T Consensus 280 ~~g~mv~~~~~~~~~~pl~~~~ 301 (320)
T 1pfk_A 280 YGGRCVGIQNEQLVHHDIIDAI 301 (320)
T ss_dssp CCSEEEEEETTEEEEEEHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHH
Confidence 9999999999999999999987
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=5.1e-85 Score=664.22 Aligned_cols=295 Identities=31% Similarity=0.453 Sum_probs=273.4
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-----
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~----- 219 (483)
+|||||||||||||||++||++++++.+ .+.+||||++||+||+++++++|+|++|++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~--~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY--HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 4899999999999999999999998863 456999999999999999999999999999999999999999984
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
+++++++++|++++||+||+||||||+++|++|+++ + ++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~----~--i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----G--FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT----T--CCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc----C--CcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999863 4 7799999999999999999999999999999999999
Q ss_pred HHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-cCCeEEEEeCCCCchh
Q 011540 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-~~~~vIVvaEGa~~~~ 378 (483)
+++|+|++ ||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|++++++ ++|++||||||+.+.
T Consensus 154 ~~~a~s~~-rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~- 227 (319)
T 4a3s_A 154 RDTATSHE-RTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSG- 227 (319)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCH-
T ss_pred HhhhhccC-CeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcc-
Confidence 99999874 79999999999999999999999 899999999999887 799999988876 589999999999642
Q ss_pred hhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 011540 379 VAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAG 458 (483)
Q Consensus 379 ~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G 458 (483)
.++++.++++++ +++|+.+|||+|||++|+++||++|++||.+||+++++|
T Consensus 228 -----------------------~~~~~~~~~~~g------~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G 278 (319)
T 4a3s_A 228 -----------------------VEFGKRIEEETN------LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEG 278 (319)
T ss_dssp -----------------------HHHHHHHHHHHC------CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------hHHHHHHHHhCC------ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 246777887776 357888999999999999999999999999999999999
Q ss_pred CCceEEEEECCEEEEeehhhhhhc
Q 011540 459 FTGFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 459 ~tg~mvgi~~~~~~~iPi~~v~~~ 482 (483)
+||+||+++|++++++||++++++
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~ 302 (319)
T 4a3s_A 279 KGGRCVGIQNNKLVDHDIIEILET 302 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHSSS
T ss_pred CCCeEEEEECCEEEEEeHHHHHhc
Confidence 999999999999999999998764
No 6
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=9.3e-86 Score=728.82 Aligned_cols=382 Identities=20% Similarity=0.229 Sum_probs=339.9
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Ccc
Q 011540 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (483)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g--------~r~ 136 (483)
.++.+||.++++..|+++.+++.+++|++++.|++++++.++.|..++. +++| +|+.+|.+++ +..
T Consensus 315 ~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~-~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~ 393 (762)
T 3o8l_A 315 RMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMD-EKRFDEAMKLRGRSFMNNWEVYKLLAHIRP 393 (762)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHH-SSCHHHHHHHHCTHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhc-cchHHHHHHhhCchHHHHHHHHHHhcCCCC
Confidence 5779999999999999999999999999999999999999999999884 6666 5888898754 111
Q ss_pred ccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccccc
Q 011540 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS 216 (483)
Q Consensus 137 ~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTs 216 (483)
... ..+++||||+||||||||||++||++|+++.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||+
T Consensus 394 ~~~-~~~~~~IgIltsGGdapGmNaaIravv~~~~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTs 470 (762)
T 3o8l_A 394 PAP-KSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-Q-GNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSK 470 (762)
T ss_dssp CCC-CSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEE
T ss_pred ccc-cccCCEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecC
Confidence 111 14578999999999999999999999998864 3 47999999999999999999999999999999999999999
Q ss_pred CCC--ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CceeEeeecccccCCccccCCcCChhhHHHHHH
Q 011540 217 RGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (483)
Q Consensus 217 R~~--~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~ 293 (483)
|+. +++++++++|++++||+||+||||||+++|++|+++++++. ++|+|||||||||||+++||+|||||||+++++
T Consensus 471 R~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 471 RTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTIC 550 (762)
T ss_dssp CCCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHH
Confidence 985 47999999999999999999999999999999999988874 689999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc-CCeEEEEeC
Q 011540 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVAE 372 (483)
Q Consensus 294 ~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~-~~~vIVvaE 372 (483)
++||+++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||++++..+.++++.+|+++. ++++|||||
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaE 629 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNE 629 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEET
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 99999999999777899999999999999999999999 8999999999999986555667777777654 678999999
Q ss_pred CCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHH
Q 011540 373 GAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAV 452 (483)
Q Consensus 373 Ga~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV 452 (483)
|+...+. ++++++.++++... .++.|...|||+|||+.|+++||++|++||.+||
T Consensus 630 ga~~~~~---------------------~~~~~~~~~~~~~~----~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av 684 (762)
T 3o8l_A 630 KCNENYT---------------------TDFIFNLYSEEGKG----IFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAM 684 (762)
T ss_dssp TSCSSSC---------------------HHHHHHHHHHHTTT----TCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCccch---------------------HHHHHHHHHhhccC----CceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHH
Confidence 9975432 34577777654211 2568888999999999999999999999999999
Q ss_pred HHHHcC---------------CCceEEEEECCEEEEeehhhhhh
Q 011540 453 HGAMAG---------------FTGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 453 ~~~~~G---------------~tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
+++++| .+|+|||++|++++++||+++.+
T Consensus 685 ~~l~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~ 728 (762)
T 3o8l_A 685 NWMAGKIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQN 728 (762)
T ss_dssp HHHHHHHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGG
T ss_pred HHHHhCccccccccccccccCCceEEEEEECCEEEEEEHHHHhh
Confidence 999997 79999999999999999999875
No 7
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=3.4e-85 Score=705.39 Aligned_cols=393 Identities=22% Similarity=0.351 Sum_probs=317.6
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccCC
Q 011540 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCGG 154 (483)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~f~~~g~r~~~~~~~~~~~iaIvtsGG 154 (483)
++|.|.+|.. |++. ......+..+.++.+...-+..+.|| +..+|.++.++.+ ..+.+||||+||||
T Consensus 11 ~~~~p~lp~~---l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~igIltsGG 82 (555)
T 2f48_A 11 QKYIPKLPNI---LKKD--FNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---FSKALNIGIILSGG 82 (555)
T ss_dssp TTCCCCCCGG---GGSC--GGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCCS---CCSCCEEEEEEBSS
T ss_pred hcCCCCCCHH---HhCC--ccceeeecCCcccCccCHHHHHHhCccccCCCcEEEecCCcccc---cCCCcEEEEECcCC
Confidence 4688999986 5541 10122333444444443322344553 4567877655311 34568999999999
Q ss_pred CCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCc-ccccccCCCc----cHHHHHHHH
Q 011540 155 LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGH----DTNKIVDNI 229 (483)
Q Consensus 155 ~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GG-s~LGTsR~~~----d~~~i~~~l 229 (483)
||||||++||++++++...+++.+||||++||+||+++++++|+|++|++|+++|| |+|||+|++. ++++++++|
T Consensus 83 daPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l 162 (555)
T 2f48_A 83 PAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVA 162 (555)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999976667888999999999999999999999999999999999 7999999853 578999999
Q ss_pred HHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhhHHHHHHHHHHHHHHhhhccC
Q 011540 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESVE 307 (483)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdTA~~~~~~~i~~i~~~A~S~~ 307 (483)
++++||+||+||||||+++|++|+++++++++.|+|||||||||||+++| |+|||||||+++++++|++++.||.|++
T Consensus 163 ~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~~ 242 (555)
T 2f48_A 163 KENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTK 242 (555)
T ss_dssp HHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999877 9999999999999999999999999998
Q ss_pred CceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCC----CCCC-hhhHHHHHHHHHHh-cCCeEEEEeCCCCch----
Q 011540 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQE---- 377 (483)
Q Consensus 308 ~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f----~l~~-~~~lle~I~~rl~~-~~~~vIVvaEGa~~~---- 377 (483)
+||||||+|||+|||||++||||+ +||+|||||+|| ++++ .+.+++.|++|..+ ++|+|||||||+...
T Consensus 243 ~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~~ 321 (555)
T 2f48_A 243 KYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEV 321 (555)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHHH
T ss_pred CcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccchH
Confidence 899999999999999999999999 899999999874 4432 23455566666554 589999999999521
Q ss_pred --h--------------------------hhccCC---------------c--c---ccccccCCccchhH--HHHHHHH
Q 011540 378 --F--------------------------VAQSMP---------------A--V---DEKDASGNRLLLDI--GLWLTQK 407 (483)
Q Consensus 378 --~--------------------------~~~~~~---------------~--~---~~~D~~Gn~~l~~i--g~~La~~ 407 (483)
+ +.+.++ . . ..+|+|||++|+++ +++|+++
T Consensus 322 ~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~ 401 (555)
T 2f48_A 322 KSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEM 401 (555)
T ss_dssp HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHHH
Confidence 1 000000 0 0 25799999999987 4455555
Q ss_pred HHhhccCce-----eEEEEeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCE-------EEEee
Q 011540 408 IKDHFTKVQ-----KMMINMKYIDPTYMIRAIPSNGSDNIYCTLLAHSAVHGAMAGFTGFTVGPVNSR-------HAYIP 475 (483)
Q Consensus 408 I~e~~~~~~-----~~~~~~k~i~pgy~qRg~~p~a~D~~~a~~LG~~AV~~~~~G~tg~mvgi~~~~-------~~~iP 475 (483)
|+++++... ...++.+...|||+|||+.|+++||+||++||+.||+++++|+||+||+++|++ +..+|
T Consensus 402 v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~vP 481 (555)
T 2f48_A 402 IQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 481 (555)
T ss_dssp HHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEE
T ss_pred HHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEeee
Confidence 544443110 012455666799999999999999999999999999999999999999999986 99999
Q ss_pred hhhhhh
Q 011540 476 IAVSSA 481 (483)
Q Consensus 476 i~~v~~ 481 (483)
|.++..
T Consensus 482 l~~~~n 487 (555)
T 2f48_A 482 LTMLMN 487 (555)
T ss_dssp GGGGEE
T ss_pred HHHHhh
Confidence 998864
No 8
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-85 Score=726.31 Aligned_cols=384 Identities=17% Similarity=0.192 Sum_probs=336.7
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Ccc
Q 011540 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (483)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g--------~r~ 136 (483)
.++++||.+|++..+++|.+++.+++|++++.|++++|..++.|.++|. +|+| +|+++|++++ +..
T Consensus 305 rlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (787)
T 3o8o_A 305 LQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIE-NKDFDKAISLRDTEFIELYENFLSTTVKDD 383 (787)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-cCCHHHHHhccCHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999999995 7887 7999999976 111
Q ss_pred -cccc-CCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccc-cCCeeccChhHHhchhccCcccc
Q 011540 137 -KVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (483)
Q Consensus 137 -~~~~-~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~v~~i~~~GGs~L 213 (483)
+... +.+++||||+||||||||||++||++|+++.+ + +++||||++||+||+ ++++++|+|.+|++|+++|||+|
T Consensus 384 ~~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~L 461 (787)
T 3o8o_A 384 GSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS-H-GHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEI 461 (787)
T ss_dssp SCSCCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTT
T ss_pred ccccCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCcee
Confidence 1111 23468999999999999999999999998864 3 479999999999999 89999999999999999999999
Q ss_pred cccCCCc--cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CceeEeeecccccCCccccCCcCChhhHHH
Q 011540 214 RTSRGGH--DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 214 GTsR~~~--d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
||+|+.+ +.++++++|++++||+||+||||||+++|.+|++++.+++ +.|+||||||||||||++||+|||||||++
T Consensus 462 GTsR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~ 541 (787)
T 3o8o_A 462 GTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLN 541 (787)
T ss_dssp CCBCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHH
Confidence 9999853 7899999999999999999999999999999998766553 579999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh---c--CC
Q 011540 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE---N--GH 365 (483)
Q Consensus 291 ~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~---~--~~ 365 (483)
+++++||+|+++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++...+.++++.++++. + .+
T Consensus 542 ~~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~ 620 (787)
T 3o8o_A 542 ALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNG 620 (787)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 99999999999998877899999999999999999999999 899999999999998433333334445542 2 34
Q ss_pred eEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHH
Q 011540 366 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 445 (483)
Q Consensus 366 ~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~ 445 (483)
.+|+++||+...+. +.+|+++|+++.+.. ++.|...|||+|||+.|+++||++|+
T Consensus 621 ~iivvaEg~~~~~~---------------------~~~la~~i~~~~~~~----~e~R~tvLGhiQRGG~Ps~~DR~lAt 675 (787)
T 3o8o_A 621 KLLVRNEQASSVYS---------------------TQLLADIISEASKGK----FGVRTAIPGHVQQGGVPSSKDRVTAS 675 (787)
T ss_dssp EEEEEETTSCSSSC---------------------HHHHHHHHHHHHTTS----SEEEEEBCGGGGGCSSCCHHHHHHHH
T ss_pred eEEEEeCCccCCCC---------------------HHHHHHHHHHHhCCC----ceeEEecccccccCCCCCHHHHHHHH
Confidence 89999999864321 467888898875421 56888999999999999999999999
Q ss_pred HHHHHHHHHHHcCC---------------------------------CceEEEEECCEEEEeehhhhhhc
Q 011540 446 LLAHSAVHGAMAGF---------------------------------TGFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 446 ~LG~~AV~~~~~G~---------------------------------tg~mvgi~~~~~~~iPi~~v~~~ 482 (483)
+||.+||+++++|. +++|+|+++++++++||++++++
T Consensus 676 r~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~ 745 (787)
T 3o8o_A 676 RFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWEN 745 (787)
T ss_dssp HHHHHHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTS
T ss_pred HHHHHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhh
Confidence 99999999999866 68999999999999999998753
No 9
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-85 Score=726.15 Aligned_cols=380 Identities=21% Similarity=0.208 Sum_probs=335.6
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 011540 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (483)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g--------~r- 135 (483)
.++++||.+|++..+++|.+++.+++|+++++|++++|..++.|.++|. +|+| +|+++|++++ +.
T Consensus 305 ~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (766)
T 3o8o_B 305 LQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMSLRDTEFIEHLNNFMAINSADH 383 (766)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCc
Confidence 5789999999999999999999999999999999999999999999995 8888 6999999976 11
Q ss_pred cccccC-CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc-CCeeccChhHHhchhccCcccc
Q 011540 136 EKVYFK-SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS-KNTLTLSPKVVNDIHKRGGTIL 213 (483)
Q Consensus 136 ~~~~~~-~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~-~~~~~L~~~~v~~i~~~GGs~L 213 (483)
.+...+ .+.+||||+||||||||||++||++|+++.. + +.+||||++||+||++ +++.+|+|++|++|+++|||+|
T Consensus 384 ~~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~L 461 (766)
T 3o8o_B 384 NEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS-Q-GHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEI 461 (766)
T ss_dssp STTCSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTT
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceE
Confidence 111111 2357999999999999999999999998864 3 4699999999999997 7899999999999999999999
Q ss_pred cccCCC---ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC-CceeEeeecccccCCccccCCcCChhhHH
Q 011540 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (483)
Q Consensus 214 GTsR~~---~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g-~~i~VvgIPkTIDNDi~gtD~S~GfdTA~ 289 (483)
||+|+. +++++++++|++++||+||+||||||+++|++|+++++++. +.|+|||||||||||+++||+|||||||+
T Consensus 462 GTsR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~ 541 (766)
T 3o8o_B 462 GTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTAL 541 (766)
T ss_dssp CCCCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHH
T ss_pred ccCCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHH
Confidence 999984 36899999999999999999999999999999998655442 56899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHH---HHHHh----
Q 011540 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE---RQLKE---- 362 (483)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~---~rl~~---- 362 (483)
++++++||+++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++ ++++.|+ ++++.
T Consensus 542 ~~~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~---~~~~~i~~~~~~~~~~~~~ 617 (766)
T 3o8o_B 542 NALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLE---QLSEDIEYLAQSFEKAEGR 617 (766)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHH---HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhcc
Confidence 999999999999999877899999999999999999999999 899999999999998 5555554 44431
Q ss_pred -cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhH
Q 011540 363 -NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDN 441 (483)
Q Consensus 363 -~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~ 441 (483)
+.+.+|+++||+...+. +.+|+++|+++.+. .++.|...|||+|||+.|+++||
T Consensus 618 ~~~~~iivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR 672 (766)
T 3o8o_B 618 GRFGKLILKSTNASKALS---------------------ATKLAEVITAEADG----RFDAKPAYPGHVQQGGLPSPIDR 672 (766)
T ss_dssp TTCCEEEEEEGGGCSSCC---------------------HHHHHHHHHHHHTT----SCEEEEEBCGGGGGCSSCCHHHH
T ss_pred CCCceEEEEeCCcCCCCc---------------------HHHHHHHHHHHhCC----CceEEEecccccccCCCCCHHHH
Confidence 24689999999854332 46788889887532 15688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCC----------------------CceEEEEECCEEEEeehhhhhh
Q 011540 442 IYCTLLAHSAVHGAMAGF----------------------TGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 442 ~~a~~LG~~AV~~~~~G~----------------------tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
++|++||.+||+++++|. +++|||+++++++++||+++++
T Consensus 673 ~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~ 734 (766)
T 3o8o_B 673 TRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYD 734 (766)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHh
Confidence 999999999999999999 8999999999999999999875
No 10
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.1e-85 Score=732.70 Aligned_cols=384 Identities=18% Similarity=0.174 Sum_probs=335.9
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 011540 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (483)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g--------~r- 135 (483)
.++++||.++++..+++|.+++.+++|+++++|++++|..++.|.++|. +|+| +|+++|++++ +.
T Consensus 483 rlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~-~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~ 561 (941)
T 3opy_B 483 LQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIE-SRNFKKAISLRDSEFVEHMKNFISTNSADH 561 (941)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999999995 8888 6999999876 11
Q ss_pred -cccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccc-cCCeeccChhHHhchhccCcccc
Q 011540 136 -EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (483)
Q Consensus 136 -~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~v~~i~~~GGs~L 213 (483)
.....+.+++||||+||||||||||++||++|+++.. .+.+||||++||+||+ ++++++|+|.+|++|+++|||+|
T Consensus 562 ~~~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiL 639 (941)
T 3opy_B 562 VPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEI 639 (941)
T ss_dssp SCCSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSS
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEe
Confidence 1111123568999999999999999999999998864 3479999999999999 79999999999999999999999
Q ss_pred cccCCC---ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCceeEeeecccccCCccccCCcCChhhHH
Q 011540 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (483)
Q Consensus 214 GTsR~~---~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~ 289 (483)
||+|+. .++++++++|++++||+||+||||||+++|.+|+++++++ .+.|+|||||||||||+++||+|||||||+
T Consensus 640 GTsR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~ 719 (941)
T 3opy_B 640 GTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCL 719 (941)
T ss_dssp CEECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH
T ss_pred ccCCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHH
Confidence 999974 3689999999999999999999999999999999876544 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-----cC
Q 011540 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NG 364 (483)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-----~~ 364 (483)
++++++||+|+++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++...+.+++++++++. +.
T Consensus 720 ~~i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~ 798 (941)
T 3opy_B 720 NSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKS 798 (941)
T ss_dssp HHHHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCC
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 999999999999999877899999999999999999999999 899999999999998433334444455542 23
Q ss_pred CeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHH
Q 011540 365 HMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYC 444 (483)
Q Consensus 365 ~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a 444 (483)
+.+|++|||+...+. +.+|++.|+++++.. ++.|...|||+|||+.|+++||++|
T Consensus 799 ~~iIvvaEga~~~~~---------------------~~~la~~i~~~~~~g----~e~R~tvLGHiQRGG~Psa~DRilA 853 (941)
T 3opy_B 799 GRLILKSENASKVLT---------------------TEVISTIIDDEASGR----FDSKTAIPGHVQQGGIPSPMDRVRA 853 (941)
T ss_dssp CEEEEEEGGGCSSSC---------------------HHHHHHHHHHHHTTS----SEEEEECCCTTTTCSSCCHHHHHHH
T ss_pred ceEEEEeCCccCCCC---------------------HHHHHHHHHHHhCCC----ceeEEccccccccCCCCCHHHHHHH
Confidence 479999999864322 457888888875421 5688899999999999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------------CceEEEEECCEEEEeehhhhhhc
Q 011540 445 TLLAHSAVHGAMAGF--------------------TGFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 445 ~~LG~~AV~~~~~G~--------------------tg~mvgi~~~~~~~iPi~~v~~~ 482 (483)
++||.+||+++++|. +++|||+++++++++||++++++
T Consensus 854 tr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~ 911 (941)
T 3opy_B 854 SRFAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDF 911 (941)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHT
T ss_pred HHHHHHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhh
Confidence 999999999999998 89999999999999999998853
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.1e-83 Score=718.47 Aligned_cols=383 Identities=17% Similarity=0.213 Sum_probs=335.3
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccCC--------cc
Q 011540 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAGP--------RE 136 (483)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~f~~~g~--------r~ 136 (483)
.++++||.++++..|+++.+++.+.+|++++.|+++++..++.|.++|. +|+| +|+++|++++. ..
T Consensus 510 rlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~-~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~ 588 (989)
T 3opy_A 510 VQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIE-AKDFDKALQLRDQEFATSYENFLSVSKYDD 588 (989)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-ccCHHHHHhccChHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999999995 7887 79999998761 11
Q ss_pred -c-cccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccc-cCCeeccChhHHhchhccCcccc
Q 011540 137 -K-VYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (483)
Q Consensus 137 -~-~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~-~~~~~~L~~~~v~~i~~~GGs~L 213 (483)
+ .-.+.+++||||+||||||||||++||++|+++.. .+.+||||++||+||+ ++++++|+|.+|++|+++|||+|
T Consensus 589 ~~~~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiL 666 (989)
T 3opy_A 589 GSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEI 666 (989)
T ss_dssp SSSCCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSS
T ss_pred ccccCCccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEe
Confidence 1 11123568999999999999999999999998863 3579999999999999 99999999999999999999999
Q ss_pred cccCCC--ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 214 GTsR~~--~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
||+|+. +++++++++|++++||+||+||||||+++|++|++++.++ .+.|+||||||||||||++||+|||||||++
T Consensus 667 GTsR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn 746 (989)
T 3opy_A 667 GTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLN 746 (989)
T ss_dssp CCBCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHH
Confidence 999985 4789999999999999999999999999999999876554 2579999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHh-----cCC
Q 011540 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NGH 365 (483)
Q Consensus 291 ~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~-----~~~ 365 (483)
+++++||+++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++...+.++++.++++. +.+
T Consensus 747 ~~~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~ 825 (989)
T 3opy_A 747 TLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSG 825 (989)
T ss_dssp HHHHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999877899999999999999999999999 899999999999998433334444455532 235
Q ss_pred eEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCChhhHHHHH
Q 011540 366 MVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSNGSDNIYCT 445 (483)
Q Consensus 366 ~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~a~D~~~a~ 445 (483)
++||||||+...+. +.+|+++|+++.+.. +++|...|||+|||+.|+++||++|+
T Consensus 826 ~IIvvaEga~~~~~---------------------~~~la~~i~e~~~~~----~e~R~tvLGHiQRGG~Psa~DRilAt 880 (989)
T 3opy_A 826 KIFIHNEKASKVYT---------------------TDLIAAIIGEAGKGR----FESRTAVPGHVQQGKSPSSIDRVNAC 880 (989)
T ss_dssp EEEEEESSSCSSSC---------------------HHHHHHHHHHTTTTT----SCEEEECCGGGGGCSSCCHHHHHHHH
T ss_pred eEEEEeCCCcCCCC---------------------HHHHHHHHHHhcCCC----ceeEecccccccCCCCCCHHHHHHHH
Confidence 79999999864332 467999999875421 56788899999999999999999999
Q ss_pred HHHHHHHHHHHcCC---------------------------------------CceEEEEECCEEEEeehhhhhh
Q 011540 446 LLAHSAVHGAMAGF---------------------------------------TGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 446 ~LG~~AV~~~~~G~---------------------------------------tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
+||.+||++++++. +.+++|++++++.+.|++++.+
T Consensus 881 r~G~~Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~ 955 (989)
T 3opy_A 881 RLAIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWE 955 (989)
T ss_dssp HHHHHHHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhh
Confidence 99999999999866 3579999999999999999864
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=7.8e-80 Score=681.56 Aligned_cols=312 Identities=21% Similarity=0.324 Sum_probs=285.3
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CeeccChhHHhchhccCcccccccCCCc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
+..||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 45699999999999999999999999875 3457999999999999999 8999999999999999999999999863
Q ss_pred -----cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHH-----------------HHHcCCceeEeeecccccCCccc
Q 011540 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 -----d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-----------------~~~~g~~i~VvgIPkTIDNDi~g 278 (483)
++++++++|++++||+||+||||||+++|+.|+++ +.+++..++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 47899999999999999999999999999988653 23446689999999999999999
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHH
Q 011540 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (483)
Q Consensus 279 tD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~ 358 (483)
||+|||||||+++++++|++|+++|.||+ |+||||||||+|||||+++|||+ +||+|||||+||++++++.+++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSSC-CEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcCc-cEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999975 79999999999999999999999 89999999999999888899999998
Q ss_pred HHHh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCCC
Q 011540 359 QLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPSN 437 (483)
Q Consensus 359 rl~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p~ 437 (483)
+.++ ++|++||||||+. |++||... +.+|++.|+++++ ++.|+..|||+|||++|+
T Consensus 250 ~~~~gk~~~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g------~~~R~tvLGh~QRgg~Ps 306 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLG------YDTRVTVLGHVQRGGTPS 306 (762)
T ss_dssp HHHTTCSCCBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTC------CCEEEECCCSSTTCSCCC
T ss_pred HHHcCCCceEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhC------CCcceeecCccccCCCCC
Confidence 7665 4689999999984 56777665 4679999999886 356778999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC---CceEEEEECCEEEEeehhhhhh
Q 011540 438 GSDNIYCTLLAHSAVHGAMAGF---TGFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 438 a~D~~~a~~LG~~AV~~~~~G~---tg~mvgi~~~~~~~iPi~~v~~ 481 (483)
++||++|++||.+||+++++|. +++||+++|++++++||+++++
T Consensus 307 a~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~ 353 (762)
T 3o8l_A 307 AFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQ 353 (762)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHh
Confidence 9999999999999999999999 8999999999999999999875
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-77 Score=662.43 Aligned_cols=311 Identities=22% Similarity=0.309 Sum_probs=272.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC---eeccChhHHhchhccCcccccccCCCc
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
++||||+||||||||||++||++|+++.+ + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998864 4 469999999999999986 789999999999999999999999863
Q ss_pred -----cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHH-----------------HHHcCCceeEeeecccccCCccc
Q 011540 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 -----d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-----------------~~~~g~~i~VvgIPkTIDNDi~g 278 (483)
+..+++++|++++||+||+||||||+++|++|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 35789999999999999999999999999988653 33445679999999999999999
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCC-hhhHHHHHH
Q 011540 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFEFIE 357 (483)
Q Consensus 279 tD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~-~~~lle~I~ 357 (483)
||+|||||||+++++++|++++++|.||+ ||||||+|||+|||||+++|||+ +||+|||||+||++++ .+.+++.++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSHS-RAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999975 79999999999999999999999 8999999999999973 223444444
Q ss_pred HHHHh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCC
Q 011540 358 RQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPS 436 (483)
Q Consensus 358 ~rl~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p 436 (483)
++.++ ++|+|||||||+.+.. |+.. .+.+|++.|+++++ +++|+..|||+|||++|
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~~~--------------~~~~---~~~~l~~~i~~~~g------~~~R~tvLGh~QRGG~P 295 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIAAD--------------LTPI---SPSDVHKVLVDRLG------LDTRITTLGHVQRGGTA 295 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBCTT--------------SCBC---CHHHHHHHHHHTTC------CCEEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhC------CceeEcccChhhcCCCC
Confidence 44333 4689999999997532 1111 14678899988775 45778899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCEEEEeehhhhhh
Q 011540 437 NGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIAVSSA 481 (483)
Q Consensus 437 ~a~D~~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPi~~v~~ 481 (483)
+++||++|++||.+||+++++|.+ |+||++++++++++||++++.
T Consensus 296 sa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~ 343 (766)
T 3o8o_B 296 VAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVK 343 (766)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHh
Confidence 999999999999999999999997 899999999999999999875
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-77 Score=664.23 Aligned_cols=312 Identities=22% Similarity=0.324 Sum_probs=270.8
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CeeccChhHHhchhccCcccccccCCCc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
+++||||+||||||||||++||++|+++.+ + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-F-GCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH-T-TCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999998863 4 46999999999999998 6899999999999999999999999863
Q ss_pred -----cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHH-------H----------HHcCCceeEeeecccccCCccc
Q 011540 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------V----------EKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 -----d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~-------~----------~~~g~~i~VvgIPkTIDNDi~g 278 (483)
+..+++++|++++||+||+||||||+++|++|+++ + .+++..++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 36789999999999999999999999999987642 2 2235679999999999999999
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCCh-hhHHHHHH
Q 011540 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFIE 357 (483)
Q Consensus 279 tD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~-~~lle~I~ 357 (483)
||+|||||||+++++++||+|+++|.|| +||||||||||+|||||+++|||+ +||+|||||+||++++. +.+.+.++
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 239 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQ 239 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999997 579999999999999999999999 89999999999999742 33444444
Q ss_pred HHHHh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCC
Q 011540 358 RQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPS 436 (483)
Q Consensus 358 ~rl~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p 436 (483)
++.++ ++|+|||||||+.+... +... +..+++.|++ ++ +++|...|||+|||++|
T Consensus 240 ~~~~~gk~~~IVvVaEGa~~~~~--------------~~~~---~~~~~~~i~~-~g------~~~R~tvLGh~QRGG~P 295 (787)
T 3o8o_A 240 RHRSKGRRNNTIIVAEGALDDQL--------------NPVT---ANDVKDALIE-LG------LDTKVTILGHVQRGGTA 295 (787)
T ss_dssp HHHHTTCCCEEEEEETTCBBTTS--------------CBCC---HHHHHHHHHH-HT------CCEEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCCccccC--------------cchh---HHHHHHHHHH-hC------CcceeeccCHhhcCCCC
Confidence 44333 46899999999975321 1111 3467788877 55 35677789999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCEEEEeehhhhhhc
Q 011540 437 NGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 437 ~a~D~~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPi~~v~~~ 482 (483)
+++||++|++||.+||+++++|.+ |+||++++++++++||++++.+
T Consensus 296 sa~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~ 344 (787)
T 3o8o_A 296 VAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKL 344 (787)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhc
Confidence 999999999999999999999997 7999999999999999998653
No 15
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.2e-77 Score=665.69 Aligned_cols=312 Identities=21% Similarity=0.318 Sum_probs=270.6
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC--CeeccChhHHhchhccCcccccccCCCc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~--~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
..+||||+||||||||||++||++|+++.. + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~-G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF-Y-GCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 457999999999999999999999998863 4 46999999999999998 5899999999999999999999999853
Q ss_pred -----cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHH-----------------HHcCCceeEeeecccccCCccc
Q 011540 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV-----------------EKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 -----d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~-----------------~~~g~~i~VvgIPkTIDNDi~g 278 (483)
++++++++|++++||+||+||||||+++|++|+++. .+.+..++|||||||||||+++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 468999999999999999999999999999987531 2234679999999999999999
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHH-HHHH
Q 011540 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLF-EFIE 357 (483)
Q Consensus 279 tD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~ll-e~I~ 357 (483)
||+|||||||+++++++||+++++|.|| +||||||+|||+|||||+++|||+ +||+|||||+||++++..+.+ +.++
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999987 579999999999999999999999 899999999999997543333 3333
Q ss_pred HHHHh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCCC
Q 011540 358 RQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIPS 436 (483)
Q Consensus 358 ~rl~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~p 436 (483)
++.++ ++|+|||||||+.+... +... +..+++.|++ ++ +.+|...|||+|||++|
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~~--------------~~i~---~~~l~~~l~~-~G------~dtR~tvLGHiQRGG~P 500 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQL--------------NPIT---SEEVKDVLVE-IG------LDTRITRLGHVQRGGAP 500 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTTS--------------CBCC---HHHHHHHHHT-TT------CEEEEEECGGGGGCSCC
T ss_pred HHHhcCCCceEEEEeCCcccccc--------------ccch---HHHHHHHHHH-hC------cchhhhhhhHHHcCCCC
Confidence 33333 36899999999975321 1111 3457777776 54 45778889999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCEEEEeehhhhhhc
Q 011540 437 NGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 437 ~a~D~~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPi~~v~~~ 482 (483)
+++||++|++||.+||+++++|.+ |+|||+++++++++||++++.+
T Consensus 501 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~ 549 (989)
T 3opy_A 501 CAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQ 549 (989)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhc
Confidence 999999999999999999999985 8999999999999999998753
No 16
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=5e-77 Score=666.57 Aligned_cols=313 Identities=22% Similarity=0.302 Sum_probs=274.0
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC---eeccChhHHhchhccCcccccccCCC
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGG 219 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~---~~~L~~~~v~~i~~~GGs~LGTsR~~ 219 (483)
..+||||+||||||||||++||++|+++.+ + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|++
T Consensus 180 ~~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~-g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-K-GCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred cCCEEEEEeeCcCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 357999999999999999999999998863 4 469999999999999986 78999999999999999999999986
Q ss_pred c-----cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHH-----------------HHHHcCCceeEeeecccccCCcc
Q 011540 220 H-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIA 277 (483)
Q Consensus 220 ~-----d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~-----------------~~~~~g~~i~VvgIPkTIDNDi~ 277 (483)
+ +..+++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||++
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 3 3578999999999999999999999999998764 34445677999999999999999
Q ss_pred ccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecCCCCCCCCCh-hhHHHHH
Q 011540 278 VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFI 356 (483)
Q Consensus 278 gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~-~~lle~I 356 (483)
+||+|||||||+++++++|++++++|.|| +||||||+|||+|||||+++|||+ +||+|||||.||++++. +.+++.+
T Consensus 338 gTD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i 415 (941)
T 3opy_B 338 STDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIV 415 (941)
T ss_dssp SCSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999987 579999999999999999999999 89999999999999742 3455555
Q ss_pred HHHHHh-cCCeEEEEeCCCCchhhhccCCccccccccCCccchhHHHHHHHHHHhhccCceeEEEEeeeeCCCccccCCC
Q 011540 357 ERQLKE-NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKDHFTKVQKMMINMKYIDPTYMIRAIP 435 (483)
Q Consensus 357 ~~rl~~-~~~~vIVvaEGa~~~~~~~~~~~~~~~D~~Gn~~l~~ig~~La~~I~e~~~~~~~~~~~~k~i~pgy~qRg~~ 435 (483)
+++.++ ++|+|||||||+.+.. |+.. .+..+++.|+++++ +++|...|||+|||++
T Consensus 416 ~~~~~~gk~~~IVVVAEGa~~~~--------------~~~i---~~~~l~~~i~~~~g------~d~R~tvLGhiQRGG~ 472 (941)
T 3opy_B 416 GKHRARGKRKTIVIVAEGAISND--------------LSPI---SCDQVKDVLVNRLG------LDTRVTTLGHVQRGGT 472 (941)
T ss_dssp HHHHHHTCCCEEEEECTTCBCTT--------------CCBC---CHHHHHHHHHHTSC------CEEEEEECGGGGTCSC
T ss_pred HHHHhcCCCcEEEEEeCCccccc--------------CCcc---hHHHHHHHHHHHhC------CceeecccChhhcCCC
Confidence 554433 5789999999997432 2211 14678888888765 4577888999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCEEEEeehhhhhhc
Q 011540 436 SNGSDNIYCTLLAHSAVHGAMAGFT---GFTVGPVNSRHAYIPIAVSSAS 482 (483)
Q Consensus 436 p~a~D~~~a~~LG~~AV~~~~~G~t---g~mvgi~~~~~~~iPi~~v~~~ 482 (483)
|+++||++|++||.+||+++++|.+ |+||++++++++++||++++.+
T Consensus 473 Psa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~ 522 (941)
T 3opy_B 473 AVAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVEL 522 (941)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhc
Confidence 9999999999999999999999997 7999999999999999998753
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.50 E-value=0.036 Score=54.38 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=50.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
.|++|+.-.+ .+..+..++.+.+.+.. .+ .+++......+++- ..| .. ....+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~g-~~v~~~~~~~~~~~-----------------~~~----~~--~~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-QG-YEVIVEQQIAHELQ-----------------LKN----VP--TGTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-TT-CEEEEEHHHHHHTT-----------------CSS----CC--EECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-CC-CEEEEecchhhhcc-----------------ccc----cc--ccchhh
Confidence 4799998755 36777888888888764 33 46665444332210 001 00 011111
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
...+.|.++++|||||+..|..... +..+|++|||
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 2346899999999999987764432 2357899998
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=92.45 E-value=0.057 Score=52.82 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=30.3
Q ss_pred HHHHHHHHHcC-------CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 223 NKIVDNIEDRG-------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 223 ~~i~~~l~~~~-------Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
+++.+.|++++ .|.++++|||||+..|..... ....++|++|||.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 44455555554 599999999999987664432 1112589999974
No 19
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=91.23 E-value=0.064 Score=53.21 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHHHHHHHHc---------------CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChh
Q 011540 222 TNKIVDNIEDR---------------GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (483)
Q Consensus 222 ~~~i~~~l~~~---------------~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~Gfd 286 (483)
.+++.+.|+++ +.|.++++|||||+..|..... .. +||+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 66666777766 4588999999999966654321 33 89999973 288988
Q ss_pred hHH--HHHHHHHHHHHH
Q 011540 287 TAV--EEAQRAINAAHV 301 (483)
Q Consensus 287 TA~--~~~~~~i~~i~~ 301 (483)
|.+ +.+.++++.+..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 344566666554
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=89.86 E-value=12 Score=35.11 Aligned_cols=175 Identities=8% Similarity=0.016 Sum_probs=92.8
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-Ccc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d 221 (483)
+..+|+++.....-|=...++.++.+.+.+ ++. ++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LNV-TVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HTC-EEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cCC-EEEEe-------------------------------CCCcCCHHH
Confidence 346899999888888889999999887764 332 33210 11111 123
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhhHHHHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdTA~~~~~~~i~~i 299 (483)
..+.++.+...++|++++.+.+.... ....+.+.+.+ +|||.+ |++++.. ..++++|-. +....+.+.+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~l 120 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAYKM 120 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHHHH
Confidence 45677888889999999998776521 11223334445 567754 4555432 245666542 2223333334
Q ss_pred HHhhhccCCceEEEEecC------CCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcC
Q 011540 300 HVEVESVENGVGIVKLMG------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG------R~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~ 364 (483)
......+ ++|.++--.+ |..||..+.....- ..+.+.+.+..++.+ .-.+.+.+-++++.
T Consensus 121 ~~~~~g~-~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 186 (305)
T 3g1w_A 121 AELLDGE-GEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDYP 186 (305)
T ss_dssp HHHTTTC-EEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHCT
T ss_pred HHHhCCC-cEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhCC
Confidence 3332344 5688886443 33455543332111 233344433444332 44555665565543
No 21
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=85.32 E-value=16 Score=33.90 Aligned_cols=128 Identities=5% Similarity=0.004 Sum_probs=72.2
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccH
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~ 222 (483)
+..+||++...-.-|-...++.++.+.+.. ++. ++.-+ -+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LGG-TAIAL-------------------------------DAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TTC-EEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEEEE-------------------------------cCCCCHHHH
Confidence 445899999877777778888888887754 332 22210 011111234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHh
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~ 302 (483)
.+.++.+...++|++++.+.+.... ....+.+.+.+ +|||.+= ++.+....++++|-. +....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~----~~~~~~~~~V~~D~~-~~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTVD----TATPHAINNTTSNNY-SIGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEES----CCCTTCSEEEEECHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEec----CCCCCcCceEecChH-HHHHHHHHHHHHH
Confidence 5678888899999999998874322 22334445555 5577653 333332335555532 1222333344433
Q ss_pred hhccCCceEEE
Q 011540 303 VESVENGVGIV 313 (483)
Q Consensus 303 A~S~~~rv~iV 313 (483)
...+ ++|.++
T Consensus 122 ~~g~-~~i~~i 131 (291)
T 3l49_A 122 LGGK-GNVLVF 131 (291)
T ss_dssp HTTC-EEEEEE
T ss_pred cCCC-ceEEEE
Confidence 3454 468777
No 22
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=83.30 E-value=0.26 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.1
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
.+.|.++++|||||+..+..... + .+|++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEE
Confidence 47899999999999877654321 3 68899997
No 23
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=82.96 E-value=28 Score=33.57 Aligned_cols=85 Identities=12% Similarity=0.007 Sum_probs=53.1
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccC-CCccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR-~~~d~ 222 (483)
..+||++...-.-|=...++.++-+.+.. ++ .+++- ..+. ..+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPVV--------------------------------GVTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCCHHHH
Confidence 34899999776677778888888877753 33 23321 0111 11234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.++.|...++|++++.+-+.+-. +.+.+.+.+ +|+|.+
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 5677888899999999998776542 233344455 556655
No 24
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=82.83 E-value=20 Score=34.38 Aligned_cols=124 Identities=7% Similarity=0.016 Sum_probs=68.4
Q ss_pred CeeEEEEccC--CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-c
Q 011540 144 EVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-H 220 (483)
Q Consensus 144 ~~~iaIvtsG--G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~ 220 (483)
..+||++... -.-|-...++.++.+.+.. ++. ++.- ..+... .
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGR-QLLL--------------------------------ADGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TTC-EEEE--------------------------------EECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CCC-EEEE--------------------------------EeCCCChH
Confidence 4589999876 5667777888888877754 332 3321 011111 2
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChhhHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~GfdTA~~~~~~~i~~i 299 (483)
...+.++.|...++|++++.+.+.+... +.+.+++.+ +|||.+ |.+++..+ .++++|-. .....+.+.+
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~D~~-~~~~~a~~~L 176 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSSHSVWCDHK-QTSFNAVAEL 176 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGGGEECBCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCCCEEEEChH-HHHHHHHHHH
Confidence 2345778888999999999987766432 333344444 556654 44443321 24555431 1122233333
Q ss_pred HHhhhccCCceEEEE
Q 011540 300 HVEVESVENGVGIVK 314 (483)
Q Consensus 300 ~~~A~S~~~rv~iVE 314 (483)
.. .++ ++|.++-
T Consensus 177 ~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 177 IN--AGH-QEIAFLT 188 (338)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--CCC-CEEEEEe
Confidence 22 354 5687773
No 25
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=77.95 E-value=35 Score=32.76 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=53.1
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~ 222 (483)
..+||++...-.-|-...++.++-..+.. ++. +++ +..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AGY-QML--------------------------------IGNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHH
Confidence 34899998777777788888888887754 332 332 111111 1234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.++.|...++|++++.+-+.+-.. .+.+.+.+ +|+|.+
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQHA--LPVVYM 147 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHTT--CCEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcCC--CCEEEE
Confidence 56778888999999999997665422 23334445 557765
No 26
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=76.59 E-value=42 Score=32.47 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=52.9
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~ 223 (483)
.+||++...-.-|-...++.++-..+.. ++. +++ +..+.. .....
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 116 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GGL-QLL--------------------------------LGYTAYSPEREE 116 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHHH
Confidence 4799998776667777788888777753 332 332 111111 12234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|||.+
T Consensus 117 ~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRAS--IPIVEI 155 (355)
T ss_dssp HHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCC--SCEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE
Confidence 677888899999999998776542 223344455 557765
No 27
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=76.37 E-value=11 Score=36.40 Aligned_cols=101 Identities=18% Similarity=0.308 Sum_probs=60.2
Q ss_pred cccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------------CCeeccChh
Q 011540 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------------KNTLTLSPK 200 (483)
Q Consensus 136 ~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------------~~~~~L~~~ 200 (483)
+....+....+-++|.++|+-+- .++ .+++.. .-++++-.|..=|++ |++--++++
T Consensus 12 ~~~~~~~~~~~~~lIv~ng~~~~---~~~----~~~~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~ 82 (247)
T 3s4y_A 12 ENLYFQGGNLKYCLVILNQPLDN---YFR----HLWNKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPE 82 (247)
T ss_dssp --------CCCEEEEECSSCCCT---THH----HHHHHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHH
T ss_pred ccccccCCCCCEEEEEECCcchH---HHH----HHHhhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHH
Confidence 33333344557778888899872 333 333333 347889888765554 344456666
Q ss_pred HHhchhccCcccccccCC-CccHHHHHHHHHHc------CCcEEEEEcCCCc
Q 011540 201 VVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDR------GINQVYIIGGDGT 245 (483)
Q Consensus 201 ~v~~i~~~GGs~LGTsR~-~~d~~~i~~~l~~~------~Id~LvvIGGdgS 245 (483)
..+.+...|-.++-..-. .-|++++++.+.+. +.+-++++|+.|.
T Consensus 83 ~~~~~~~~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 83 VREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHHhcCCEEEECCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 666666666555533211 12688888877654 7899999999996
No 28
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=76.20 E-value=28 Score=32.36 Aligned_cols=125 Identities=8% Similarity=0.097 Sum_probs=68.7
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccH
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~ 222 (483)
+..+||++...-.-|-...++.++.+.+.. ++. ++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KGY-SVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CCC-EEEEEe-------------------------------CCCCHHHH
Confidence 345899999877777778888888877754 332 333110 11111234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChhhHHHHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~GfdTA~~~~~~~i~~i~~ 301 (483)
.+.++.+...++|++++.+.+.... +.+.+.+. .+|||.+ |++++..+ .++++|-. +....+.+.+..
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 122 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELPK--TFPIVAV----NRELRIPGCGAVLSENV-RGARTAVEYLIA 122 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCT--TSCEEEE----SSCCCCTTCEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhcc--CCCEEEE----ecccCCCCCCEEEECcH-HHHHHHHHHHHH
Confidence 5678888999999999998876332 22233223 4667754 45444221 24444432 112222333322
Q ss_pred hhhccCCceEEEE
Q 011540 302 EVESVENGVGIVK 314 (483)
Q Consensus 302 ~A~S~~~rv~iVE 314 (483)
..+ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (291)
T 3egc_A 123 --RGH-TRIGAIV 132 (291)
T ss_dssp --TTC-CSEEEEC
T ss_pred --cCC-CEEEEEe
Confidence 244 4677764
No 29
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=76.13 E-value=1.3 Score=45.41 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=68.1
Q ss_pred cCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccC--cc---ccc
Q 011540 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRG--GT---ILR 214 (483)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~G--Gs---~LG 214 (483)
......+|+||+== ..|.+-..++.+++.|... +.+||- +.++.+ ... +...- +. .+-
T Consensus 34 w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~~--~~~V~v---------e~~~~~----~~~-~~~~~~~~~~~~~~~ 96 (365)
T 3pfn_A 34 WNKSPKSVLVIKKM-RDASLLQPFKELCTHLMEE--NMIVYV---------EKKVLE----DPA-IASDESFGAVKKKFC 96 (365)
T ss_dssp ESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHHT--SCEEEE---------EHHHHH----SHH-HHHCSTTHHHHHHCE
T ss_pred cCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHC--CCEEEE---------ehHHhh----hhc-ccccccccccccccc
Confidence 33345589999842 3577888899999988752 356652 111100 000 00000 00 000
Q ss_pred ccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH--HH
Q 011540 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EA 292 (483)
Q Consensus 215 TsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~ 292 (483)
+.+. +.+.+ ..++|.++++|||||+-.|..+.. +..+||+||=. -++||-|-++ .+
T Consensus 97 ~~~~--~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~ 154 (365)
T 3pfn_A 97 TFRE--DYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENF 154 (365)
T ss_dssp EECT--TTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTH
T ss_pred cccc--Chhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHH
Confidence 0000 11111 247899999999999988776543 45688999942 2788877533 45
Q ss_pred HHHHHHHHH
Q 011540 293 QRAINAAHV 301 (483)
Q Consensus 293 ~~~i~~i~~ 301 (483)
.++++++..
T Consensus 155 ~~~l~~vl~ 163 (365)
T 3pfn_A 155 QSQVTQVIE 163 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 556665543
No 30
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=75.67 E-value=54 Score=30.81 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=91.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
+.+||++...-.-|-...+++++-+.+.. ++. ++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LGA-KVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TSC-EEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEEE-------------------------------ECCCCCHHHHH
Confidence 35899999877788888999998887764 332 3320 11111112345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC--CcCChhhHHHHHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD--~S~GfdTA~~~~~~~i~~i~~ 301 (483)
+.++.+...++|++++.+-+.... ....+.+.+.+ +|||.+ |++++..+ .++++|-. +....+.+.+..
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 119 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNE-KVGELQAKALVD 119 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHHHH
Confidence 677888889999999999876531 11223333344 667765 45554333 46666632 112222333321
Q ss_pred hhhccCCceEEEEe-cC------CCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc
Q 011540 302 EVESVENGVGIVKL-MG------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363 (483)
Q Consensus 302 ~A~S~~~rv~iVEv-MG------R~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~ 363 (483)
...+ ++|.++-- .+ |..||..+...... .+++.++++....-...+.-.+.+++.+++.
T Consensus 120 -~~G~-~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 185 (313)
T 3m9w_A 120 -IVPQ-GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWLPENALKIMENALTAN 185 (313)
T ss_dssp -HCSS-EEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGCHHHHHHHHHHHHHHT
T ss_pred -hCCC-CcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcCHHHHHHHHHHHHHhC
Confidence 1344 46777742 22 44566654443321 2355554432111111224445556666554
No 31
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.94 E-value=43 Score=30.93 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=70.7
Q ss_pred CCeeEEEEccC-----CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccC
Q 011540 143 DEVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR 217 (483)
Q Consensus 143 ~~~~iaIvtsG-----G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR 217 (483)
+..+||++... -.-|-...+++++.+.+.+ ++. ++.- ..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EGY-ALYM--------------------------------STGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TTC-EEEE--------------------------------CCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cCC-EEEE--------------------------------EeCC
Confidence 34589999987 6778888899998887754 332 3320 0111
Q ss_pred C-CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhh--HHHHH
Q 011540 218 G-GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEA 292 (483)
Q Consensus 218 ~-~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdT--A~~~~ 292 (483)
. .+...++++.+...++|++++.+.+.+-. ..+.+.+.+ +|||.+ |++.+.. -.++++|- +...+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVLI----GKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEEE----SCCSSCTTTSCEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEEE----CCCCCCCCCCCEEEECcHHHHHHH
Confidence 1 12235678888899999999998775532 233444445 556654 4444332 23455443 33333
Q ss_pred HHHHHHHHHhhhccCCceEEEEe
Q 011540 293 QRAINAAHVEVESVENGVGIVKL 315 (483)
Q Consensus 293 ~~~i~~i~~~A~S~~~rv~iVEv 315 (483)
++.+ .. .++ ++|.++--
T Consensus 123 ~~~L---~~--~G~-~~i~~i~~ 139 (292)
T 3k4h_A 123 AEYL---IS--LGH-KQIAFIGG 139 (292)
T ss_dssp HHHH---HH--TTC-CCEEEEES
T ss_pred HHHH---HH--CCC-ceEEEEeC
Confidence 3322 22 244 46877753
No 32
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=73.89 E-value=0.9 Score=45.01 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=24.4
Q ss_pred HcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 231 ~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
..+.|.++++|||||+..|...... . .++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 3578999999999998887655432 2 36899997
No 33
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=72.10 E-value=23 Score=32.93 Aligned_cols=184 Identities=10% Similarity=-0.032 Sum_probs=95.7
Q ss_pred CCeeEEEEccCC-CCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-Cc
Q 011540 143 DEVRACIVTCGG-LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (483)
Q Consensus 143 ~~~~iaIvtsGG-~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~ 220 (483)
+..+||++...- .-|-...++.++-+.+.. .++..+.-.. ...+.. ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~~g~~~~~~~-----------------------------~~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTT-YSDFNISANI-----------------------------THYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHH-TGGGCEEEEE-----------------------------EEECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHH-HHhCCeEEEE-----------------------------EcCCCCCHH
Confidence 446899998776 778888888888887754 2111222100 000111 12
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhh--HHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRAI 296 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdT--A~~~~~~~i 296 (483)
...+.++.+...++|++++.+-+.... ..+.+.+.+.+ +|||.+ |++++.. ..++++|- +...+++
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~-- 126 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYT--KGFTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAAR-- 126 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGT--HHHHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHH--HHHHHHHHHCC--CeEEEE----eCCCCCCCceEEEecChHHHHHHHHH--
Confidence 235667888899999999998775421 11223344445 557754 4444432 23455543 3333333
Q ss_pred HHHHHhhhccCCceEEEEe-----------cCCCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcC-
Q 011540 297 NAAHVEVESVENGVGIVKL-----------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG- 364 (483)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEv-----------MGR~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~- 364 (483)
.+...... +++|.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++-++++.
T Consensus 127 -~l~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 200 (304)
T 3gbv_A 127 -MLMLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREHPD 200 (304)
T ss_dssp -HHHHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHCTT
T ss_pred -HHHHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhCCC
Confidence 22222111 256887752 3366677765544222 234444444455554 34455665565542
Q ss_pred -CeEEEEeC
Q 011540 365 -HMVIVVAE 372 (483)
Q Consensus 365 -~~vIVvaE 372 (483)
-+|+..+.
T Consensus 201 ~~ai~~~~d 209 (304)
T 3gbv_A 201 VKHGITFNS 209 (304)
T ss_dssp CCEEEESSS
T ss_pred eEEEEEcCc
Confidence 34444433
No 34
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=71.08 E-value=58 Score=29.96 Aligned_cols=129 Identities=17% Similarity=0.104 Sum_probs=72.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
.+||++...-.-|-...+++++-+.+.. ++. ++.-+. +........+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~~~~ 62 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QGY-SMLLTS-------------------------------TNNNPDNERR 62 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TTC-EEEEEE-------------------------------CTTCHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CCC-EEEEEe-------------------------------CCCChHHHHH
Confidence 5899999888888888899998887754 332 332110 1111123456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchH-HHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChhhHHHHHHHHHHHHHHh
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQK-GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHVE 302 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~-~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~GfdTA~~~~~~~i~~i~~~ 302 (483)
.++.+...++|++++.+.+.+.. ....+.+.+.+.+ +|||.+ |++.+..+ .++++|-. +....+.+.+..
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 134 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAAPSFTLDDV-KGGMMAAEHLLS- 134 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSSCEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCCCEEEeCcH-HHHHHHHHHHHH-
Confidence 78888899999999999875421 1122334444455 567754 44443322 24554432 122223333322
Q ss_pred hhccCCceEEEEec
Q 011540 303 VESVENGVGIVKLM 316 (483)
Q Consensus 303 A~S~~~rv~iVEvM 316 (483)
.++ ++|.++--.
T Consensus 135 -~G~-~~i~~i~~~ 146 (298)
T 3tb6_A 135 -LGH-THMMGIFKA 146 (298)
T ss_dssp -TTC-CSEEEEEES
T ss_pred -CCC-CcEEEEcCC
Confidence 244 468777543
No 35
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=69.63 E-value=4.9 Score=39.87 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcc
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~ 277 (483)
.++++.+...+.|.++++|||||+..+..-. .+.+.++++.+||.==-||+.
T Consensus 70 ~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 70 TLEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 3444455556789999999999987754332 123567899999986677774
No 36
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=69.30 E-value=1.2 Score=45.95 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=36.3
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHHHcCCce-eEeeecccccCCccccCCcCChhhHHH--HHHHHHHHHH
Q 011540 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQV-AVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (483)
Q Consensus 232 ~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i-~VvgIPkTIDNDi~gtD~S~GfdTA~~--~~~~~i~~i~ 300 (483)
.+.|.++++|||||+..|..... ...+ ||+||+. | ++||-|.++ .+.++++.+.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~-------G---~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL-------G---TLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC-------S---SCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC-------C---CcccCCcCChHHHHHHHHHHh
Confidence 45899999999999988765532 2346 7999962 2 667777643 3444555543
No 37
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=67.52 E-value=7.7 Score=38.46 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc--CCceeEeeecccccCCcc
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIA 277 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~--g~~i~VvgIPkTIDNDi~ 277 (483)
++++.+...+.|.++++|||||+..+..-.. ++ +.++++..||.==-||+.
T Consensus 73 ~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~---~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 73 RYVEEARKFGVATVIAGGGDGTINEVSTALI---QCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHHHHHHHHH---HCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHhcCCCEEEEEccchHHHHHHHHHh---hcccCCCCeEEEecCcCHHHHH
Confidence 4444455567999999999999877543322 22 456888889975556654
No 38
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=67.22 E-value=56 Score=30.65 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=54.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~ 222 (483)
..+||++...-.-|-...++.++-+.+.+ ++. +++ +..+.. .+..
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HST-DVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TTC-CEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCChHHH
Confidence 34799998777777788888888877753 332 222 111111 2234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
.+.++.|...++|++++.+.+.+... ..+.+.+ .+|||.+=.
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i~~ 102 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEESC
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEECC
Confidence 57788899999999999998776430 2233333 466776533
No 39
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=67.13 E-value=36 Score=31.87 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=50.4
Q ss_pred CeeEEEEcc----CCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC
Q 011540 144 EVRACIVTC----GGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (483)
Q Consensus 144 ~~~iaIvts----GG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~ 219 (483)
..+||++.. .-.-|=...+++++-+.+.+ ++ .++.-+. + ...
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~-~~~ 51 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RG-LDLLLIP-------------------------------D-EPG 51 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------E-CTT
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------C-CCh
Confidence 347999886 33445566677777777653 33 2332110 0 012
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
....++.+.+...++|++++.+.+.+... .+.+.+.+ +|||.+
T Consensus 52 ~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 94 (294)
T 3qk7_A 52 EKYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQN--FPFLAL 94 (294)
T ss_dssp CCCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHTT--CCEEEE
T ss_pred hhHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhCC--CCEEEE
Confidence 23456788889999999999998765422 23344445 556644
No 40
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=64.84 E-value=1e+02 Score=29.54 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=23.2
Q ss_pred CeeEEEEccCCCC-cchhHHHHHHHHHHHH
Q 011540 144 EVRACIVTCGGLC-PGINTVIREIVCGLSY 172 (483)
Q Consensus 144 ~~~iaIvtsGG~a-pGmNavIr~iv~~~~~ 172 (483)
..+||+++.+-.. |=...++.++.+.+..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~ 32 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD 32 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 4589999987766 7888888888887754
No 41
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=63.82 E-value=98 Score=29.07 Aligned_cols=102 Identities=18% Similarity=0.108 Sum_probs=60.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
+.+|||+...-.-|=...++.++-+.+.. ++. ++.-+ .+........
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~-------------------------------~~~~~~~~~~ 49 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AGY-KTDLQ-------------------------------YADDDIPNQL 49 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TTC-EEEEE-------------------------------ECTTCHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cCC-EEEEe-------------------------------eCCCCHHHHH
Confidence 45899999887788888888888887754 332 32200 0111112234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc---cCCcCChh
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV---IDKSFGFD 286 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g---tD~S~Gfd 286 (483)
+.++.+...++|++++.+-+.... ....+.+.+.+ +|||.+ |++++. .+.++|+|
T Consensus 50 ~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 50 SQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 667788889999999998775322 12223344445 667765 444433 23456655
No 42
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=62.82 E-value=9.1 Score=38.48 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
..+++++.+++++.|.++-|||-=.+..|..++-. ++ +++|.||-|--.|
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTTa~tg 123 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---LD--AYIVIVPTAASTD 123 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HT--CEEEEEESSCCSS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---cC--CCEEEeccccCCC
Confidence 46788889999999999999998888888887732 24 7899999994434
No 43
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=61.75 E-value=18 Score=33.88 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=51.3
Q ss_pred CcEEEEEccccccccc---------CCeeccChhHHhchhccCcccccccCC--CccHHHHHHHHHHcCCcEEEEEcCCC
Q 011540 176 VDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG 244 (483)
Q Consensus 176 ~~~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs~LGTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdg 244 (483)
...++|+-.|..=|++ |++=-++++..+.+...| .++-.... .-|++++++.+.+++.+-++++|+.|
T Consensus 22 ~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~G 100 (212)
T 3l8m_A 22 HEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATG 100 (212)
T ss_dssp TSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3578999999887654 455567777777777776 65544333 23789999999999999999999999
Q ss_pred c
Q 011540 245 T 245 (483)
Q Consensus 245 S 245 (483)
.
T Consensus 101 g 101 (212)
T 3l8m_A 101 G 101 (212)
T ss_dssp S
T ss_pred C
Confidence 6
No 44
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=60.75 E-value=1e+02 Score=28.24 Aligned_cols=123 Identities=7% Similarity=0.028 Sum_probs=65.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..+||++...-..|-...++.++-..+.. ++. ++.- .-+........
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 53 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KGY-TLIL-------------------------------GNAWNNLEKQR 53 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------EcCCCChHHHH
Confidence 34899998766677777788888777653 221 2210 00000112234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC--CcCChhh--HHHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDT--AVEEAQRAINAA 299 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD--~S~GfdT--A~~~~~~~i~~i 299 (483)
+.++.+...++|++++.+.+.+-.. .+.+.+. ..+|||.+ |++.+..+ .++++|- +...+++ .+
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~---~L 121 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGR---YL 121 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCHHH----HHHHHHT-TTSCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHH----HHHHHhc-cCCCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHH---HH
Confidence 5678888899999999988765322 2223331 23667765 33333222 2555552 3333333 33
Q ss_pred HHhhhccCCceEEEE
Q 011540 300 HVEVESVENGVGIVK 314 (483)
Q Consensus 300 ~~~A~S~~~rv~iVE 314 (483)
.. .++ ++|.++-
T Consensus 122 ~~--~G~-~~i~~i~ 133 (289)
T 1dbq_A 122 IE--RGH-REIGVIP 133 (289)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--CCC-CeEEEEe
Confidence 22 244 5687763
No 45
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=57.99 E-value=65 Score=30.01 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=54.6
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccccc--CCCcc
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGGHD 221 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTs--R~~~d 221 (483)
+.+||++...-.-|-...+++++.+.+.. ++. ++.- ..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LKV-DLQI-------------------------------LAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------ECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hCc-EEEE-------------------------------ECCCCcCCHHH
Confidence 46899999887788888899998887754 332 2220 0011 11223
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..+.++.+...++|++++.+-+.... ....+.+.+.+ ||||.+
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~ 92 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEE
Confidence 45677888889999999988765522 11223334445 557755
No 46
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=56.18 E-value=11 Score=36.95 Aligned_cols=87 Identities=21% Similarity=0.296 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~ 300 (483)
+..++++.+.+ +.|.++++|||||+..+.. .+.....++++..||.==-||+.- ++|...-.+. +++.+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~ar---~lg~~~~~~~---a~~~i~ 121 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFSR---TLGVPQNIAE---AAKLIT 121 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHHH---HTTCCSSHHH---HHHHHT
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHHH---HcCCCccHHH---HHHHHH
Confidence 44555555544 8899999999999876432 222223568899999877777742 3333322222 233332
Q ss_pred HhhhccCCceEEEEecCCCc
Q 011540 301 VEVESVENGVGIVKLMGRYS 320 (483)
Q Consensus 301 ~~A~S~~~rv~iVEvMGR~~ 320 (483)
....+.+=+.++-+|+.
T Consensus 122 ---~g~~~~iDlg~v~~~~F 138 (304)
T 3s40_A 122 ---KEHVKPVDVAKANGQHF 138 (304)
T ss_dssp ---TCCEEEEEEEEETTEEE
T ss_pred ---hCCeEEEEEEEECCEEE
Confidence 22334566777666643
No 47
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=55.82 E-value=8.6 Score=39.35 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC----------------CceeEeeecccccCC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG----------------LQVAVAGIPKTIDND 275 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g----------------~~i~VvgIPkTIDND 275 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.....+ -.+++|.||-|--.|
T Consensus 93 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtg 164 (408)
T 1oj7_A 93 ETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATG 164 (408)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchh
Confidence 34678899999999999999999888888887765422111 347899999986444
No 48
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=55.53 E-value=36 Score=32.13 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=50.0
Q ss_pred cEEEEEccccccccc---------CCeeccChhHHhchhccCcccccccCC--CccHHHHHHHHHHcCCcEEEEEcCCCc
Q 011540 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 177 ~~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs~LGTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS 245 (483)
..++|+-.|..=|++ |++--++++..+.+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 25 ~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~GG 104 (223)
T 3k94_A 25 VCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTDMEIALDWAVEQTARCIRLFGATGG 104 (223)
T ss_dssp EEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCTTCCEECCBTTBCHHHHHHHHHHTTCCSEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCcCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 468888888876653 455566777666666665445543332 237899999999999999999999996
No 49
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=55.27 E-value=34 Score=33.37 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccC---CCccHHHHHHHHHHc
Q 011540 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDR 232 (483)
Q Consensus 157 pGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR---~~~d~~~i~~~l~~~ 232 (483)
|--+...+.+++.+.+.++..+|.-+..- ..+ ...-....+.+...|+.+..... +..++...+..+++.
T Consensus 124 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~ 197 (392)
T 3lkb_A 124 TSYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQA 197 (392)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhc
Confidence 33445566677777654455565544321 111 11111223344556776655433 235778888899999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
+.|++|+.+.+ ..+..+.+.+++.|+++++++...
T Consensus 198 ~~dav~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ 232 (392)
T 3lkb_A 198 GVEYVVHQNVA---GPVANILKDAKRLGLKMRHLGAHY 232 (392)
T ss_dssp TCCEEEEESCH---HHHHHHHHHHHHTTCCCEEEECGG
T ss_pred CCCEEEEecCc---chHHHHHHHHHHcCCCceEEEecC
Confidence 99999887633 344556677778899988887643
No 50
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=54.46 E-value=12 Score=37.97 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHc-------------CCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+.|.++-|||--++..|..++-..... .-.+++|.||-|--.|-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 4578899999999999999999988888888877554211 11478999999986544
No 51
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=54.32 E-value=13 Score=38.02 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+.|.++-|||--++..|..++-. + .+|+|.||-|-..|-
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~---~--~~p~i~IPTTagtgS 144 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID---T--GARIVIAPTIASTDA 144 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH---T--TCEEEECCSSCCCST
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCcccCCc
Confidence 457788999999999999999998888888888732 2 478999999855444
No 52
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=53.78 E-value=1.1e+02 Score=28.14 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=54.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
+.+||++...-.-|=...+++++-+.+.. ++ .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 46899999877777788888888877754 22 2222 0111 1112345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.++.+...++|++++.+-+.... ..+.+.+.+.+ +|||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999998776532 22233444455 567754
No 53
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=53.77 E-value=42 Score=31.63 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=54.6
Q ss_pred cEEEEEccccccccc---------CCeeccChhHHhchhccCcccccccCC--CccHHHHHHHHHHcCCcEEEEEcCCCc
Q 011540 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 177 ~~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs~LGTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS 245 (483)
.-++|+-.|..=|++ |++=-++++..+.+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 468888888876653 455566777776666665445544333 237899999999999999999999996
Q ss_pred -----hHHHHHHHHH
Q 011540 246 -----QKGAALIYKE 255 (483)
Q Consensus 246 -----~~~A~~L~~~ 255 (483)
+.....|.+.
T Consensus 106 R~DH~lani~ll~~~ 120 (222)
T 3lm8_A 106 RADHFLGNIQLLYKG 120 (222)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 4444445443
No 54
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=51.63 E-value=1.1e+02 Score=28.04 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=70.8
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~ 223 (483)
.+||++...-.-|-...+++++-+.+.. ++ .+++- .++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLVV--------------------------------LDSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------EECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEEE--------------------------------eCCCCCHHHHH
Confidence 3788888766667777788888777653 23 22220 011111 1223
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC--CcCChhhHHHHHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD--~S~GfdTA~~~~~~~i~~i~~ 301 (483)
+.++.+...++|++++.+.+.... ..+.+.+.+.+ +|||.+ |++.+..+ .+++.|-. .....+.+.+..
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 118 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVITL----DRQATKGEVVSHIASDNV-LGGKIAGDYIAK 118 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEEe----cCCCCCCceeEEEecChH-HHHHHHHHHHHH
Confidence 556777788999999987654321 11223344445 566654 55444322 25665532 112223333332
Q ss_pred hhhccCCceEEEEec-------CCCcchHHHHH
Q 011540 302 EVESVENGVGIVKLM-------GRYSGFISMYA 327 (483)
Q Consensus 302 ~A~S~~~rv~iVEvM-------GR~~G~LA~~a 327 (483)
....+ ++|.++--. -|..||..+..
T Consensus 119 ~g~g~-~~I~~i~g~~~~~~~~~R~~Gf~~al~ 150 (271)
T 2dri_A 119 KAGEG-AKVIELQGIAGTSAARERGEGFQQAVA 150 (271)
T ss_dssp HHCTT-CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HcCCC-CeEEEEECCCCCccHhHHHHHHHHHHh
Confidence 22223 468777522 24456665443
No 55
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=51.29 E-value=14 Score=37.20 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC---------------CceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG---------------LQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g---------------~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.....+ -.+++|.||-|--.|-
T Consensus 75 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 146 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAA 146 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchh
Confidence 35788999999999999999999888888887776542111 1478999999985554
No 56
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=51.24 E-value=1.5e+02 Score=27.34 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=66.5
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~ 222 (483)
..+||++...-.-|-...++.++.+.+.+ ++. ++. +-.+.. ....
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 61 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YKY-NII--------------------------------LSNSDQNMEKE 61 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHHH
Confidence 35899998766667777788888777753 332 222 001111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhh--HHHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAH 300 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdT--A~~~~~~~i~~i~ 300 (483)
.+.++.+...++|++++.+.+.+.. ..+.+.+.+ +|||.+-..++++ . -.++++|- +...+++. +.
T Consensus 62 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~---L~ 129 (289)
T 2fep_A 62 LHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLAASVEEQE--E-TPSVAIDYEQAIYDAVKL---LV 129 (289)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEESCCCTTC--C-SCEEECCHHHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEccccCCC--C-CCEEEECcHHHHHHHHHH---HH
Confidence 4667888889999999998765422 223333445 5677653333221 1 12455442 33333333 32
Q ss_pred HhhhccCCceEEEEe
Q 011540 301 VEVESVENGVGIVKL 315 (483)
Q Consensus 301 ~~A~S~~~rv~iVEv 315 (483)
. .++ ++|.++--
T Consensus 130 ~--~G~-~~I~~i~~ 141 (289)
T 2fep_A 130 D--KGH-TDIAFVSG 141 (289)
T ss_dssp H--TTC-SSEEEEES
T ss_pred H--CCC-CeEEEEeC
Confidence 2 244 56877754
No 57
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=51.24 E-value=1.4e+02 Score=27.00 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=66.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~ 223 (483)
.+||++...-.-|-...++.++-+.+.+ ++ .++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4799998766667777788887777653 22 1221 1111111 2234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc-CCcCChhhHHHHHHHHHHHHHHh
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHVE 302 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt-D~S~GfdTA~~~~~~~i~~i~~~ 302 (483)
+.++.+...++|++++.+.+.+-. +.+.+.+.+ +|||.+ |.+.+.. -.++++|-. +....+.+.+..
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 117 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEI----AELSSKASYLNIGVDHF-EVGKACTRHLIE- 117 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEE----SSSCSSSSSEEECBCHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----eeccCCCCCCEEEEChH-HHHHHHHHHHHH-
Confidence 567888889999999998775532 223344445 567765 3333221 135666532 112223333332
Q ss_pred hhccCCceEEEEe
Q 011540 303 VESVENGVGIVKL 315 (483)
Q Consensus 303 A~S~~~rv~iVEv 315 (483)
.++ ++|.++--
T Consensus 118 -~G~-~~i~~i~~ 128 (275)
T 3d8u_A 118 -QGF-KNVGFIGA 128 (275)
T ss_dssp -TTC-CCEEEEEC
T ss_pred -CCC-CeEEEEcC
Confidence 244 56877753
No 58
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=50.41 E-value=8.3 Score=38.97 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTI 272 (483)
+..+++++.+++.+.|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 85 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 150 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTA 150 (371)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCC
Confidence 356788889999999999999998888888877754321 00347899999993
No 59
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=49.25 E-value=16 Score=37.05 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+.|.++-|||--++..|..++-. ++ +|+|.||-|- .+-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tgS 125 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AGS 125 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-ccc
Confidence 357888999999999999999998888888887753 34 6799999987 553
No 60
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=48.47 E-value=1.5e+02 Score=27.27 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=61.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..+||++...-..|-...++.++-+.+.. ++ .++.-.. + +........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~--------------~----------------~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVY--------------S----------------GSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEe--------------C----------------CCCCHHHHH
Confidence 35899999777778788888888877753 33 2222100 0 000011123
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhh--HHHHHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAHV 301 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdT--A~~~~~~~i~~i~~ 301 (483)
+.++.+...++|++++.+.+.+- ...+.+.+. .+|||.+-...+++ -.++++|- +...++ +.+..
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~--~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~---~~L~~ 122 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTD----DNLQLLQSS--DVPYCFLSMGFDDD----RPFISSDDEDIGYQAT---NLLIN 122 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHHHHHHHHH---HHHHT
T ss_pred HHHHHHHhcCCCEEEEecccCCH----HHHHHHHhC--CCCEEEEcCCCCCC----CCEEEeChHHHHHHHH---HHHHH
Confidence 45667778899999999876542 122333333 46677764433332 22455543 333333 33332
Q ss_pred hhhccCCceEEEE
Q 011540 302 EVESVENGVGIVK 314 (483)
Q Consensus 302 ~A~S~~~rv~iVE 314 (483)
.++ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (290)
T 3clk_A 123 --EGH-RQIGIAG 132 (290)
T ss_dssp --TTC-CSEEEES
T ss_pred --cCC-CEEEEEe
Confidence 244 5677764
No 61
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=48.04 E-value=1.7e+02 Score=26.96 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=66.6
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~ 222 (483)
..+||++...-.-|=...++.++-+.+.. ++ .++.- ..+.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVVV--------------------------------ATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------ECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCchhhh
Confidence 35899998765666677788888777653 33 22220 01111 1223
Q ss_pred HH---HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhh--HHHHHHHHHH
Q 011540 223 NK---IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAIN 297 (483)
Q Consensus 223 ~~---i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdT--A~~~~~~~i~ 297 (483)
.+ .++.+...++|++++.+.+.+.. ..+.+.+.+ +|||.+-..++++ . -.++++|- +...++ +
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~---~ 121 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFLNRAFDAL--P-DASFCPDHRRGGELAA---A 121 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEESSCCTTS--G-GGEECCCHHHHHHHHH---H
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEEccccCCC--C-CCEEEeCcHHHHHHHH---H
Confidence 44 77888899999999998876522 223334445 5577653332221 1 13455553 333333 3
Q ss_pred HHHHhhhccCCceEEEEe
Q 011540 298 AAHVEVESVENGVGIVKL 315 (483)
Q Consensus 298 ~i~~~A~S~~~rv~iVEv 315 (483)
.+.. .++ ++|.++--
T Consensus 122 ~L~~--~G~-~~I~~i~~ 136 (290)
T 2rgy_A 122 TLIE--HGH-RKLAVISG 136 (290)
T ss_dssp HHHH--TTC-CSEEEEES
T ss_pred HHHH--CCC-ceEEEEeC
Confidence 3322 244 56887753
No 62
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=47.70 E-value=20 Score=35.98 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+.|.++-|||--++..|..++-. ++ +++|.||-|- .|-
T Consensus 74 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa-tgS 124 (353)
T 3hl0_A 74 EVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY-AGS 124 (353)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS-CCG
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc-hhh
Confidence 357788999999999999999998888888877652 34 7899999997 543
No 63
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=47.10 E-value=20 Score=36.21 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH------c-------CCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------R-------GLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~------~-------g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.++|.++-|||--.+..|..++-.... + .-.+++|.||-|--.|-
T Consensus 79 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 148 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTAS 148 (387)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccc
Confidence 357889999999999999999998888888877654211 1 02478999999985444
No 64
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=47.10 E-value=6.1 Score=40.73 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhH
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA 288 (483)
+..+++++.+.+.++ |.++-+||--....|..++.. +...+++|.||-|. +..+|-+.|--|+
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl---la~vDssvggkt~ 172 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL---LSQVDSSVGGKTA 172 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH---HHHHHTSSSCEEE
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC---ccccccCcCCeEE
Confidence 357889999999999 699999998888877766532 22347899999997 3445555555444
No 65
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=47.08 E-value=1.7e+02 Score=26.84 Aligned_cols=122 Identities=11% Similarity=-0.016 Sum_probs=64.9
Q ss_pred CeeEEEEccCCCC--cchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCcc
Q 011540 144 EVRACIVTCGGLC--PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (483)
Q Consensus 144 ~~~iaIvtsGG~a--pGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d 221 (483)
..+|||+...-.- |=...++.++-+.+.+ ++ .++.-+. +......
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~ 54 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVTP-------------------------------HIHAKDS 54 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEECC-------------------------------BSSGGGT
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCcchhH
Confidence 3589999865443 7777888888777643 33 2222000 0001122
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChhh--HHHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAINA 298 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~GfdT--A~~~~~~~i~~ 298 (483)
..++.+.+...++|++++.+.+..-.. .+.+.+.+ +|||. +|++.+..+ .++++|- +...+++ .
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~---~ 121 (288)
T 3gv0_A 55 MVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVT----HGRSDMGIEHAFHDFDNEAYAYEAVE---R 121 (288)
T ss_dssp THHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEE----ESCCCSSCCCEEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEE----ECCcCCCCCCcEEEeCcHHHHHHHHH---H
Confidence 346667788899999999986644322 23344445 55764 444443322 2455543 3333333 2
Q ss_pred HHHhhhccCCceEEEE
Q 011540 299 AHVEVESVENGVGIVK 314 (483)
Q Consensus 299 i~~~A~S~~~rv~iVE 314 (483)
+.. .++ ++|.++-
T Consensus 122 L~~--~G~-~~I~~i~ 134 (288)
T 3gv0_A 122 LAQ--CGR-KRIAVIV 134 (288)
T ss_dssp HHH--TTC-CEEEEEC
T ss_pred HHH--CCC-CeEEEEc
Confidence 222 244 4677763
No 66
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=45.84 E-value=17 Score=37.04 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHcC---CcEEEEEcCCCchHHHHHHHHHHHHc-------------CCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~---Id~LvvIGGdgS~~~A~~L~~~~~~~-------------g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.+ .|.++-|||--++..|..++-..... +-.+++|.||-|--.|-
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtgS 165 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTGA 165 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSCT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccch
Confidence 35788899999998 99999999988898888887543110 11478999998875444
No 67
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=45.60 E-value=1.7e+02 Score=26.32 Aligned_cols=167 Identities=11% Similarity=0.156 Sum_probs=86.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
.+||++...-.-|-...++.++-+.+.. ++. ++.-+. +....+...+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RGY-QLLIAS-------------------------------SDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TTC-EEEEEE-------------------------------CTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CCC-EEEEEe-------------------------------CCCCHHHHHH
Confidence 4799999877778888888888877754 332 332110 1111123456
Q ss_pred HHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChhhHHHHHHHHHHHHHHhh
Q 011540 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHVEV 303 (483)
Q Consensus 225 i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~GfdTA~~~~~~~i~~i~~~A 303 (483)
.++.+...++|++++.+.+..... ..+.+.+.+ +|||. +|++++..+ .++++|-. +....+.+.+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~-- 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPEDD---SYRELQDKG--LPVIA----IDRRLDPAHFCSVISDDR-DASRQLAASLLS-- 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHTT--CCEEE----ESSCCCTTTCEEEEECHH-HHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCEEEEecCccccHH---HHHHHHHcC--CCEEE----EccCCCccccCEEEEchH-HHHHHHHHHHHH--
Confidence 778888999999999987743211 223344445 55664 455554322 24444422 112223333322
Q ss_pred hccCCceEEEEecC-------CCcchHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhc
Q 011540 304 ESVENGVGIVKLMG-------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363 (483)
Q Consensus 304 ~S~~~rv~iVEvMG-------R~~G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~ 363 (483)
..+ +++.++--.- |..||.. ++...+.+...+....++.+ .-.+.+++-++++
T Consensus 118 ~G~-~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 177 (272)
T 3o74_A 118 SAP-RSIALIGARPELSVSQARAGGFDE---ALQGYTGEVRRYQGEAFSRE---CGQRLMQQLIDDL 177 (272)
T ss_dssp TCC-SEEEEEEECTTSHHHHHHHHHHHH---HTTTCCSEEEEEEESSSSHH---HHHHHHHHHHHHH
T ss_pred CCC-cEEEEEecCCCCccHHHHHHHHHH---HHHHcCCChheeecCCCCHH---HHHHHHHHHHhcC
Confidence 244 5687775432 2234443 33333444444333334332 3445555555553
No 68
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=44.89 E-value=21 Score=36.08 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
+..+++++.+++.+.|.++-|||--++..|..++-. ++ +++|.||-|-
T Consensus 76 ~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 76 ESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 346788999999999999999998888888887753 34 6799999885
No 69
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.77 E-value=2.2e+02 Score=27.29 Aligned_cols=85 Identities=11% Similarity=0.189 Sum_probs=48.7
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~ 223 (483)
.+||++...-.-|-...++.++-+.+.. ++. +++ +..+... ....
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 112 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASK-AGL-ATI--------------------------------ITNSNEDATTMS 112 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHH-TTC-CEE--------------------------------EEECTTCHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCCHHHHH
Confidence 4799998665566666777777776643 221 221 0011111 1234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
+.++.|...++|++++.+.+.+- ...+.+.+.+ +|+|.+=
T Consensus 113 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~i~ 152 (348)
T 3bil_A 113 GSLEFLTSHGVDGIICVPNEECA----NQLEDLQKQG--MPVVLVD 152 (348)
T ss_dssp HHHHHHHHTTCSCEEECCCGGGH----HHHHHHHHC---CCEEEES
T ss_pred HHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHhCC--CCEEEEc
Confidence 56788888999999999876542 1223344445 5677653
No 70
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=44.75 E-value=82 Score=29.45 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=51.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-CccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d~ 222 (483)
+.+||++...-..|-...++.++-+.+.. ++. ++. +..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RGI-TLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EeCCCCCHHHH
Confidence 36899999776677777788887777653 332 222 001111 1223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCch-HHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~-~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.++.|...++|++++.+.+... .. ..+.+.+.+ +|||.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEe
Confidence 456778888999999999876542 22 223333445 567765
No 71
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=44.37 E-value=1.8e+02 Score=26.35 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=44.1
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..+||++...-.-|=...++.++.+.+.+ ++ .++.-+ .+. ......
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~-~~~~~~ 50 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVI-------------------------------DSL-TSQAGT 50 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEE-------------------------------CSS-SSCSSS
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCC-CchHHH
Confidence 45899999877788888899998887753 33 233211 111 112233
Q ss_pred HHHHHHHHcCCcEEEEEcCCCc
Q 011540 224 KIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS 245 (483)
+.++.|...++|+++ ++.+..
T Consensus 51 ~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 51 DPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CHHHHHHTTCCSEEE-EESCC-
T ss_pred HHHHHHHhCCCCEEE-ecCCCC
Confidence 566778889999999 887665
No 72
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=43.04 E-value=2e+02 Score=26.70 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=51.1
Q ss_pred CeeEEEEccC-----CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC
Q 011540 144 EVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG 218 (483)
Q Consensus 144 ~~~iaIvtsG-----G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~ 218 (483)
..+||++... -.-|-...++.++-+.+.. ++. ++.- ..+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RGY-STRM--------------------------------TVSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HTC-EEEE--------------------------------CCCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CCC-EEEE--------------------------------EeCCC
Confidence 3589999876 4556666777777776653 232 3320 01111
Q ss_pred -CccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 219 -GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 219 -~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.....++++.+...++|++++.+.+.+-. ..+.+.+.+ +|||.+
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i 112 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV 112 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE
Confidence 12235678889999999999998775432 223344445 557654
No 73
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=42.27 E-value=1.4e+02 Score=28.92 Aligned_cols=138 Identities=15% Similarity=0.220 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCcEE--EEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc----cccC----CcCChhhHHHH
Q 011540 222 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI----AVID----KSFGFDTAVEE 291 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~L--vvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi----~gtD----~S~GfdTA~~~ 291 (483)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|= .|- |-+. .++-..+-++.
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPf---SDP~aDGpvIq~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPF---SDPLADGPTIQGANLRALAAKTTPDI 83 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---CCGGGCCSHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 4566677776665555 788999999999999999999899988899995 121 1111 01111112223
Q ss_pred HHHHHHHHHHhhhccCCceEEEEecCCCc-----chHHHHH-hhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCC
Q 011540 292 AQRAINAAHVEVESVENGVGIVKLMGRYS-----GFISMYA-TLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (483)
Q Consensus 292 ~~~~i~~i~~~A~S~~~rv~iVEvMGR~~-----G~LA~~a-aLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~ 365 (483)
+-+.+..++..-...+ +. +||=+- |.-.... +..+ |+|.+++|-.|+.. .+.+.+..++.|-
T Consensus 84 ~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee------~~~~~~~~~~~gl 151 (271)
T 3nav_A 84 CFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKA-GVDSVLIADVPTNE------SQPFVAAAEKFGI 151 (271)
T ss_dssp HHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHH-TCCEEEETTSCGGG------CHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHC-CCCEEEECCCCHHH------HHHHHHHHHHcCC
Confidence 3455555654322222 22 454211 3222222 2233 89999999888742 2334445555554
Q ss_pred e-EEEEeCCC
Q 011540 366 M-VIVVAEGA 374 (483)
Q Consensus 366 ~-vIVvaEGa 374 (483)
. +.+++-..
T Consensus 152 ~~I~lvap~t 161 (271)
T 3nav_A 152 QPIFIAPPTA 161 (271)
T ss_dssp EEEEEECTTC
T ss_pred eEEEEECCCC
Confidence 3 44665444
No 74
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=41.80 E-value=18 Score=36.87 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-------------cCCceeEeeecccccCCc
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-------------~g~~i~VvgIPkTIDNDi 276 (483)
+..+++++.+++.++|.++-|||--++..|..++-.... ..-.+++|.||-|--.|-
T Consensus 88 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 157 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGT 157 (407)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcch
Confidence 357888999999999999999998888888887654210 013478999999865443
No 75
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=40.87 E-value=59 Score=30.98 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred cchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccC---CCccHHHHHHHHHHc
Q 011540 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDR 232 (483)
Q Consensus 157 pGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR---~~~d~~~i~~~l~~~ 232 (483)
|.-+...+.+++.+...++..+|.-+... ..+ ..+.....+.+...|+.+..... +..++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 33444556667766554455555444321 111 11111123344556776654332 235778888999999
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 233 ~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
+.|++|+.+-+. .+..+.+.+++.|+++++++..
T Consensus 193 ~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 226 (356)
T 3ipc_A 193 GVSIIYWGGLHT---EAGLIIRQAADQGLKAKLVSGD 226 (356)
T ss_dssp TCCEEEEESCHH---HHHHHHHHHHHHTCCCEEEECG
T ss_pred CCCEEEEccCch---HHHHHHHHHHHCCCCCcEEEec
Confidence 999988766443 2334556677789998887654
No 76
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=40.75 E-value=23 Score=35.77 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHH
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~ 290 (483)
+..+++++.+.++++ |.++-+||--....|..++-.. .+| +++|.||-|. +.+||-+.|--|+++
T Consensus 78 ~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl---la~tdS~v~~kt~I~ 145 (368)
T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF---LAASDSVLSIKQAVN 145 (368)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH---HHHHTTTSSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch---HhhcCCCcCCeEEEE
Confidence 346788889999985 9999999987777777665421 234 7899999997 455555555555443
No 77
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=39.90 E-value=71 Score=31.58 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=55.1
Q ss_pred EEEEEcccccccccCCeeccChhHHhchhccCc-c-cc-cccCC--CccHHHHHHHHHHcCCcEEEEEcCCC------ch
Q 011540 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-T-IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG------TQ 246 (483)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GG-s-~L-GTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdg------S~ 246 (483)
..+-+.+|--|... +-|...+..+.+.=| . +. =|||. ...++..+..++..||+-++++.||- .+
T Consensus 54 ~fvsVT~gagg~~r----~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~ 129 (304)
T 3fst_A 54 KFVSVTYGANSGER----DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPE 129 (304)
T ss_dssp SEEEECCCTTSSCH----HHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------C
T ss_pred CEEEEeeCCCCcch----hHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCC
Confidence 45666666655432 222333444444223 1 11 14444 45688889999999999999999984 35
Q ss_pred HHHHHHHHHHHHc-CCceeEeeec
Q 011540 247 KGAALIYKEVEKR-GLQVAVAGIP 269 (483)
Q Consensus 247 ~~A~~L~~~~~~~-g~~i~VvgIP 269 (483)
..|..|.+.+++. ++.|.|.+-|
T Consensus 130 ~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 130 MYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp CCHHHHHHHHHHHCCCEEEEEECT
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCC
Confidence 5578888877664 6777777777
No 78
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=39.59 E-value=1.4e+02 Score=28.75 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCcEE--EEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC---------CcCChhhHHH
Q 011540 222 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID---------KSFGFDTAVE 290 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~L--vvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD---------~S~GfdTA~~ 290 (483)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|= .| |.-| .++-..+-++
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPf---SD-P~aDGp~Iq~a~~~AL~~G~~~~ 80 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPF---SD-PLADGPVIQGANLRSLAAGTTSS 80 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---SC-CTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CC-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 3455666666555555 788999999999999999998999988899985 12 2222 1111222233
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEecCCCc-----chHHHHHhhhcCCCcEEecCCCCCCCCChhhHHHHHHHHHHhcCC
Q 011540 291 EAQRAINAAHVEVESVENGVGIVKLMGRYS-----GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (483)
Q Consensus 291 ~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~-----G~LA~~aaLA~~~ad~vlIPE~~f~l~~~~~lle~I~~rl~~~~~ 365 (483)
.+-+.+..++......+ +. +|+=+- |.-...-.++..|+|.+++|-.|+.. .+.+.+..++.|-
T Consensus 81 ~~~~~v~~ir~~~~~~P--iv---lm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee------~~~~~~~~~~~gl 149 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMP--IG---LLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEE------SAPFSKAAKAHGI 149 (267)
T ss_dssp HHHHHHHHHHHHCTTCC--EE---EEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGG------CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh------HHHHHHHHHHcCC
Confidence 44566666664422233 22 465311 22222222222289999999888742 1334445556564
Q ss_pred -eEEEEeCCCC
Q 011540 366 -MVIVVAEGAG 375 (483)
Q Consensus 366 -~vIVvaEGa~ 375 (483)
.+.+++=...
T Consensus 150 ~~i~liaP~t~ 160 (267)
T 3vnd_A 150 APIFIAPPNAD 160 (267)
T ss_dssp EEECEECTTCC
T ss_pred eEEEEECCCCC
Confidence 3446665543
No 79
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=38.83 E-value=90 Score=28.49 Aligned_cols=121 Identities=9% Similarity=-0.026 Sum_probs=61.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..+||++...-.-|-...++.++...+.. ++. ++.-+ .+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~~-------------------------------~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HGY-QVLIG-------------------------------NSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-CEEEE-------------------------------ECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCC-EEEEE-------------------------------eCCCCHHHHH
Confidence 34799998776777777888888777753 332 22200 0111112345
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHH-HHHHcCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHHHHh
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYK-EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~-~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i~~~ 302 (483)
+.++.+...++|++++.+.+ . . ..+ .+.+.+ +|||. +|++.+..+ ++++|-.- ....+.+.+..
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~---~--~-~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~~-~g~~a~~~L~~- 119 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN---E--N-IIENTLTDHH--IPFVF----IDRINNEHN-GISTNHFK-GGQLQAEVVRK- 119 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG---H--H-HHHHHHHHC---CCEEE----GGGCC----------HHH-HHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEecCC---h--H-HHHHHHHcCC--CCEEE----EeccCCCCC-eEEechHH-HHHHHHHHHHH-
Confidence 67888889999999998822 1 1 233 444455 55665 455555444 77776421 12223333332
Q ss_pred hhccCCceEEEE
Q 011540 303 VESVENGVGIVK 314 (483)
Q Consensus 303 A~S~~~rv~iVE 314 (483)
.++ ++|.++-
T Consensus 120 -~G~-~~i~~i~ 129 (277)
T 3e61_A 120 -GKG-KNVLIVH 129 (277)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 244 4677775
No 80
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.70 E-value=1.6e+02 Score=27.06 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=45.6
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccC--CCcc
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGHD 221 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR--~~~d 221 (483)
..+||++...-.-|-...++.++-+.+.. ++. ++.- ..+.. ....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g~-~~~~-------------------------------~~~~~~~~~~~ 51 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEK-QGV-NLRV-------------------------------LEAGGYPNKSR 51 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HTC-EEEE-------------------------------EECSSTTCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-eEEE-------------------------------EcCCCCCCHHH
Confidence 45899999877778888888888877754 332 2221 00111 1123
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCc
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS 245 (483)
..+.++.+...++|++++.+.+..
T Consensus 52 ~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 52 QEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 456778888899999999987655
No 81
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=38.44 E-value=65 Score=30.02 Aligned_cols=69 Identities=16% Similarity=0.038 Sum_probs=44.4
Q ss_pred CeeEEEEccCCCCcchh-HHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccH
Q 011540 144 EVRACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmN-avIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~ 222 (483)
..+||++...-.-|-.. .++.++.+.+.+ ++ .+++-+. +.......
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 59 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILIAN-------------------------------TGGSSERE 59 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHH
Confidence 34799988766667777 888888777754 33 2332110 10111234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCc
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGT 245 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS 245 (483)
.+.++.|...++|++++.+.+..
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEecCCcc
Confidence 56788889999999999987644
No 82
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=38.43 E-value=2.1e+02 Score=26.58 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=39.8
Q ss_pred CCCccHHHHHHHHHHcCCcEEEEEcCCC---------chHHHHHHHHHHHHcCCceeEeeecc
Q 011540 217 RGGHDTNKIVDNIEDRGINQVYIIGGDG---------TQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 217 R~~~d~~~i~~~l~~~~Id~LvvIGGdg---------S~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
|...++++.++.+++.|++++=+..... +...+..+.+.++++|+.+..++.|.
T Consensus 27 ~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 27 PAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3345789999999999999987766543 23456678888888898877676664
No 83
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=38.36 E-value=2.3e+02 Score=25.73 Aligned_cols=125 Identities=8% Similarity=0.044 Sum_probs=64.6
Q ss_pred CeeEEEEccC--CCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-Cc
Q 011540 144 EVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (483)
Q Consensus 144 ~~~iaIvtsG--G~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~ 220 (483)
..+||++... -..|-...++.++-+.+.+ .+ .++. +-.+.. ..
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~ 64 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLL--------------------------------LADGKHSAE 64 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEE--------------------------------EECCTTSHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHH
Confidence 4589999865 5567777788888777653 22 1222 000111 11
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHH-cCCceeEeeecccccCCccccCCcCChhhHHHHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~-~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~~i 299 (483)
...+.++.|...++|++++.+.+.+-. .+ +.+.+ .+ +|||.+-...++. . -.++++|-.- ....+.+.+
T Consensus 65 ~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~~~~~~~~--~-~~~V~~d~~~-~~~~a~~~l 134 (296)
T 3brq_A 65 EERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVLNRRLRKN--S-SHSVWCDHKQ-TSFNAVAEL 134 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEESCCCSSS--G-GGEECCCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEEccccCCC--C-CCEEEEchHH-HHHHHHHHH
Confidence 234567778889999999998865422 22 33444 44 5677653333221 1 1245555321 122223333
Q ss_pred HHhhhccCCceEEEEe
Q 011540 300 HVEVESVENGVGIVKL 315 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEv 315 (483)
.. .++ ++|.++--
T Consensus 135 ~~--~G~-~~I~~i~~ 147 (296)
T 3brq_A 135 IN--AGH-QEIAFLTG 147 (296)
T ss_dssp HH--TTC-CSEEEECC
T ss_pred HH--CCC-ceEEEEcC
Confidence 22 244 56877743
No 84
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=38.20 E-value=2.3e+02 Score=25.76 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=54.5
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccH
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~ 222 (483)
+..+||++...-.-|=...++.++.+.+.. ++. ++.-+. +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NKY-EALVAT-------------------------------SQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TTC-EEEEEE-------------------------------CSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cCC-EEEEEC-------------------------------CCCCHHHH
Confidence 345899999877778888888888887754 332 332110 11111233
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.++.|...++|++++.+.+..... .+.+.+.+.+ +|||.+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~ 95 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI 95 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe
Confidence 46778888899999999987765421 2223344445 567765
No 85
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=37.89 E-value=45 Score=30.68 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=34.8
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.+--|+.+.+.+++++.++.+++.+|.+-|-.. +-+. ++- ....||||||-.
T Consensus 47 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 47 VSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM--LAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH--HHH-----TCSSCEEEEEEC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 344466677888888888899997776655443 3332 221 346899999964
No 86
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.82 E-value=1.2e+02 Score=28.59 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=64.1
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~ 222 (483)
..+||++...-..|-...++.++-+.+.. ++. ++. +..+... ...
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~--------------------------------~~~~~~~~~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YKY-NII--------------------------------LSNSDQNQDKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HTC-EEE--------------------------------EEECCSHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEeCCCChHHH
Confidence 45899998766667778888888777753 232 222 0011111 122
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc-CCcCChhhHHHHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAAHV 301 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt-D~S~GfdTA~~~~~~~i~~i~~ 301 (483)
.+.++.+...++|++++.+.+.+-. ..+.+.+.+ +|+|.+- .+.+.. -.++++|-.- ....+.+.+..
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~~----~~~~~~~~~~V~~D~~~-~~~~a~~~L~~ 174 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKKSP--VPVVLAA----SIESTNQIPSVTIDYEQ-AAFDAVQSLID 174 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTTSS--SCEEEES----CCCSCTTSCEEEECHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHhCC--CCEEEEc----cccCCCCCCEEEEChHH-HHHHHHHHHHH
Confidence 3556777778999999998765431 223333334 6677653 333221 1245554321 12222333322
Q ss_pred hhhccCCceEEEEe
Q 011540 302 EVESVENGVGIVKL 315 (483)
Q Consensus 302 ~A~S~~~rv~iVEv 315 (483)
.++ ++|.++--
T Consensus 175 --~G~-~~I~~i~~ 185 (332)
T 2hsg_A 175 --SGH-KNIAFVSG 185 (332)
T ss_dssp --TTC-SCEEEEES
T ss_pred --CCC-CEEEEEeC
Confidence 255 56887753
No 87
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=37.51 E-value=48 Score=32.47 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=66.6
Q ss_pred eccChhHHhchhccC-cccccccCC-CccHHHHHHHHHHcCCcEEEEE----cCCCchHHHHHHHHHHH-Hc-CCceeEe
Q 011540 195 LTLSPKVVNDIHKRG-GTILRTSRG-GHDTNKIVDNIEDRGINQVYII----GGDGTQKGAALIYKEVE-KR-GLQVAVA 266 (483)
Q Consensus 195 ~~L~~~~v~~i~~~G-Gs~LGTsR~-~~d~~~i~~~l~~~~Id~LvvI----GGdgS~~~A~~L~~~~~-~~-g~~i~Vv 266 (483)
++++++++-.+...+ +...-||-- ..++.++.+.+.+.+ +.+++| |=-||+.+|...++.+. ++ +.+|.||
T Consensus 44 ~di~~~efy~~~~~~~~~~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 44 VDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp TTBCHHHHHHHHHHCTTCCCEEECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCceecCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 578988888877766 566777764 356778888777778 667666 35788999988886663 33 3444443
Q ss_pred eecccccCCccccCCcCChhhHHHHHHHHHH----------HHHHhhhccCCceEEEEec
Q 011540 267 GIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN----------AAHVEVESVENGVGIVKLM 316 (483)
Q Consensus 267 gIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~----------~i~~~A~S~~~rv~iVEvM 316 (483)
|.- -.|.|..=.+..+++.++ .+..-.... +-+|+|+..
T Consensus 123 ------DS~----~~s~g~g~~v~~A~~l~~~G~s~~eI~~~l~~~~~~~-~~~f~v~~L 171 (297)
T 3nyi_A 123 ------DSK----QNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASA-RIFFTVGSL 171 (297)
T ss_dssp ------ECS----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-EEEEECSCS
T ss_pred ------eCC----chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-EEEEEECCH
Confidence 211 125555555555554443 222222222 347888875
No 88
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=37.48 E-value=21 Score=32.37 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=19.0
Q ss_pred CccHHHHHHHHHHc----CCcEEEEEcCCCc
Q 011540 219 GHDTNKIVDNIEDR----GINQVYIIGGDGT 245 (483)
Q Consensus 219 ~~d~~~i~~~l~~~----~Id~LvvIGGdgS 245 (483)
+.|.+.|.+.|++. +.|.+++.||-|.
T Consensus 50 ~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 50 PDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45566666655553 7899999999763
No 89
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=37.44 E-value=47 Score=30.19 Aligned_cols=89 Identities=17% Similarity=0.309 Sum_probs=52.5
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCceeEeeecccccCCccccCCcCChhhHHHH
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~ 291 (483)
.+--|+.+.+.+++++.++.+++.++.+-|-.. +-+. ++- ....||||||-... ++. |.|
T Consensus 38 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~~-~l~------G~d----- 98 (163)
T 3ors_A 38 VSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM--VAS-----LTTLPVIGVPIETK-SLK------GID----- 98 (163)
T ss_dssp CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEECCT-TTT------THH-----
T ss_pred ECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--HHh-----ccCCCEEEeeCCCC-CCC------CHH-----
Confidence 444566677888888888899997776655443 3332 221 24588999996433 222 333
Q ss_pred HHHHHHHHHHhhhccCCce--EEEEec---CCCcchHHHHH
Q 011540 292 AQRAINAAHVEVESVENGV--GIVKLM---GRYSGFISMYA 327 (483)
Q Consensus 292 ~~~~i~~i~~~A~S~~~rv--~iVEvM---GR~~G~LA~~a 327 (483)
.+....+ ++.+| ..|=.= |.++|++|+..
T Consensus 99 ------sLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 99 ------SLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp ------HHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred ------HHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 2222222 34454 666553 67888887654
No 90
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=37.43 E-value=58 Score=28.74 Aligned_cols=50 Identities=26% Similarity=0.506 Sum_probs=35.6
Q ss_pred ccHHHHHHHHH-HcCCcEEEEEcCCCchHHHHHHHHHHHHc-CCceeEeeecccc
Q 011540 220 HDTNKIVDNIE-DRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~-~~~Id~LvvIGGdgS~~~A~~L~~~~~~~-g~~i~VvgIPkTI 272 (483)
-|..-+++.++ ..++|.++++-||+=+.-+. +.++++ |.++-++|.|+..
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 46655555543 25799999999999887654 445564 9888888887643
No 91
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=37.37 E-value=2.7e+02 Score=26.24 Aligned_cols=86 Identities=10% Similarity=0.138 Sum_probs=50.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~ 222 (483)
..+||++...-..|-...++.++-..+.. ++. ++. +..+... ...
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~ 108 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASM-YKY-NMI--------------------------------LANSDNDVEKE 108 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EEECCCChHHH
Confidence 35899998765666677788887777653 332 222 0011111 123
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
.+.++.|...++|++++.+.+.+-.. .+.+.+.+ +|+|.+-
T Consensus 109 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~~--iPvV~~~ 149 (332)
T 2o20_A 109 EKVLETFLSKQVDGIVYMGSSLDEKI----RTSLKNSR--TPVVLVG 149 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCCCHHH----HHHHHHHC--CCEEEES
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEEc
Confidence 45677888899999999987554322 23333445 5566653
No 92
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=37.28 E-value=29 Score=34.73 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
+..+++++.++++++ |.++-+||--.+..|..++... .+ .+++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 120 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LR--GVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcH
Confidence 457888999999998 8999999988888777666421 23 47899999885
No 93
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=37.11 E-value=2.8e+02 Score=26.39 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGD 243 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGd 243 (483)
+.++.++.|.+.++|++|++|..
T Consensus 50 ~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 50 EYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECChh
Confidence 45577888889999999998744
No 94
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=36.94 E-value=55 Score=31.60 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.+.++++.|++.+.+++++-.-.-+. ....|.+ .+++||++|
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~-----~~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQN-----VAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHH-----HCSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHH-----HCCCCEEcc
Confidence 456788899999999977666543333 3333332 356889986
No 95
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=36.65 E-value=1.8e+02 Score=27.58 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCccccccc--CCCccHHHHHHHHHHcC
Q 011540 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTS--RGGHDTNKIVDNIEDRG 233 (483)
Q Consensus 157 pGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTs--R~~~d~~~i~~~l~~~~ 233 (483)
|.-....+.+++.+.+.++..+|.-+. +-. ..+ ..+.....+.+...|+.+.... .+..++...++.+++.+
T Consensus 130 ~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~----~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~ 204 (366)
T 3td9_A 130 FIDPFQGAAMAVFAYKNLGAKRVVVFT-DVE----QDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFN 204 (366)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCEEEEEE-ETT----CHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEE-eCC----CcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcC
Confidence 333445566677775444555555442 111 111 1111112334455677655443 23457788889999999
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 234 Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
.|++|+.+-+ ..+..+.+.+++.|+++++++..
T Consensus 205 ~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~ 237 (366)
T 3td9_A 205 PDAIYITGYY---PEIALISRQARQLGFTGYILAGD 237 (366)
T ss_dssp CSEEEECSCH---HHHHHHHHHHHHTTCCSEEEECG
T ss_pred CCEEEEccch---hHHHHHHHHHHHcCCCceEEeeC
Confidence 9999886543 23445667777889988877654
No 96
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=36.07 E-value=36 Score=33.88 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
+..+++++.++++++ |.++-+||--.+..|..++-.. .+ .+++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 121 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FR--GIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEeCCch
Confidence 457899999999999 9999999988888777665321 23 47899999985
No 97
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=35.20 E-value=35 Score=33.76 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=55.4
Q ss_pred EEEEEcccccccccCCeeccChhHHhchhccCcc-cc-cccCC--CccHHHHHHHHHHcCCcEEEEEcCCCc--------
Q 011540 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-------- 245 (483)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs-~L-GTsR~--~~d~~~i~~~l~~~~Id~LvvIGGdgS-------- 245 (483)
.-+-+.+|-.|- ...-|......+...|=. +. =|||. ...++..+..++..||+.++++.||-.
T Consensus 44 d~vsVT~~~~g~----~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~ 119 (310)
T 3apt_A 44 AFVSITYGAMGS----TRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRP 119 (310)
T ss_dssp SEEEECCCSTTC----SHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCC
T ss_pred CEEEEecCCCCC----cchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCC
Confidence 455566666553 222244444445533321 11 14444 356788889999999999999999932
Q ss_pred ----hHHHHHHHHHHHHc-C--CceeEeeec
Q 011540 246 ----QKGAALIYKEVEKR-G--LQVAVAGIP 269 (483)
Q Consensus 246 ----~~~A~~L~~~~~~~-g--~~i~VvgIP 269 (483)
+..|..|.+.+++. | +.|-|.+-|
T Consensus 120 ~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 120 HPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 55688888877776 4 677777766
No 98
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=35.03 E-value=38 Score=33.72 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHcCC---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
+..+++++.++++++ |.++-|||--.+..|..++-.. .+ .+++|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 457889999999999 9999999988888877776432 23 47899999986
No 99
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=34.94 E-value=2.9e+02 Score=25.90 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhhHHHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAH 300 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdTA~~~~~~~i~~i~ 300 (483)
.+.++.+...++|++++.+.+... .....+.+.+.+ +|||.+ |++++.. ..++++|-. .....+.+.+.
T Consensus 52 ~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 122 (325)
T 2x7x_A 52 AEDVHYFMDEGVDLLIISANEAAP--MTPIVEEAYQKG--IPVILV----DRKILSDKYTAYIGADNY-EIGRSVGNYIA 122 (325)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHH--HHHHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEe----CCCCCCcceeEEEecCHH-HHHHHHHHHHH
Confidence 456777888999999998765432 122234444445 567765 3333321 224555432 11222333333
Q ss_pred HhhhccCCceEEEE
Q 011540 301 VEVESVENGVGIVK 314 (483)
Q Consensus 301 ~~A~S~~~rv~iVE 314 (483)
....++ ++|.++-
T Consensus 123 ~~~~G~-~~I~~i~ 135 (325)
T 2x7x_A 123 SSLKGK-GNIVELT 135 (325)
T ss_dssp HHTTTE-EEEEEEE
T ss_pred HHcCCC-ceEEEEE
Confidence 222244 4677774
No 100
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.39 E-value=58 Score=24.88 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=38.8
Q ss_pred ccccCCCccHHHHHHHHHHcCCc---------EEEEEcCCCchHHHHHHHHHHHHcCCc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id---------~LvvIGGdgS~~~A~~L~~~~~~~g~~ 262 (483)
+|+-+...+-++..+.|++.+++ +-+.+|.+.+...|..+.+.+++.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 45555556778888888888877 446788888888999998888887875
No 101
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=34.31 E-value=54 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=40.1
Q ss_pred ccccCCCccHHHHHHHHHHcCCc---------EEEEEcCCCchHHHHHHHHHHHHcCCcee
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQVA 264 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id---------~LvvIGGdgS~~~A~~L~~~~~~~g~~i~ 264 (483)
+|+-+...+-+++.+.|+..++. +-|.+|.+.+...|..+.+.+++.|++-.
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 45555556778888999988887 45778888899999998888887777643
No 102
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=33.94 E-value=65 Score=29.66 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=22.1
Q ss_pred CCeeEEEEcc-CCCCcchhHHHHHHHHHHHH
Q 011540 143 DEVRACIVTC-GGLCPGINTVIREIVCGLSY 172 (483)
Q Consensus 143 ~~~~iaIvts-GG~apGmNavIr~iv~~~~~ 172 (483)
+..+||++.. .-.-|-...++.++-+.+.+
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~ 40 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK 40 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 3458999986 55677788888888877754
No 103
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=32.94 E-value=2.5e+02 Score=26.48 Aligned_cols=104 Identities=18% Similarity=0.322 Sum_probs=57.9
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccC---------CeeccChhHHhchhccCcccccccCC
Q 011540 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK---------NTLTLSPKVVNDIHKRGGTILRTSRG 218 (483)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~---------~~~~L~~~~v~~i~~~GGs~LGTsR~ 218 (483)
++|.+||+.|- ....+.+ ++.. .-++|+-.|..=|++. |+=-++++..+.+.. .+.-....
T Consensus 34 v~Iv~~G~~~~-~~~~~~~----~~~~--~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~---~i~~~~~k 103 (231)
T 2omk_A 34 AIILANGEYPA-HELPLRL----LAEA--QFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS---IILQISDQ 103 (231)
T ss_dssp EEEECSSSCCC-SHHHHHH----HHHC--SCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG---GEECCCSS
T ss_pred EEEEECCCCch-hHHHHHH----HhcC--CEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC---EEEeCCCC
Confidence 55667787662 2222222 2222 2689999998877653 333344444444331 12211111
Q ss_pred -CccHHHHHHHHHHcCCcEEEEEcCCCc-----hHHHHHHHHHHHHcCCc
Q 011540 219 -GHDTNKIVDNIEDRGINQVYIIGGDGT-----QKGAALIYKEVEKRGLQ 262 (483)
Q Consensus 219 -~~d~~~i~~~l~~~~Id~LvvIGGdgS-----~~~A~~L~~~~~~~g~~ 262 (483)
.-|.++++....+++.+-++++|+.|. +.....|.+. .+++.+
T Consensus 104 D~TD~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~-~~~~~~ 152 (231)
T 2omk_A 104 ETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEY-MRSGME 152 (231)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHH-HHTTCE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHH-HhcCCe
Confidence 237899999999999999999999996 3344445443 333444
No 104
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.62 E-value=3.2e+02 Score=25.75 Aligned_cols=122 Identities=8% Similarity=0.075 Sum_probs=65.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~ 222 (483)
..+||++...-.-|-...++.++-+.+.. ++ .+++ +..+... +..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 34899998765667777788888777653 33 2222 0011111 223
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC--CcCChhh--HHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDT--AVEEAQRAINA 298 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD--~S~GfdT--A~~~~~~~i~~ 298 (483)
.+.++.|...++|++++.+.+.+-.. .+.+.+. ..+|||.+ |++.+..+ .++++|- +...+++.
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~--- 171 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY--- 171 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHTT-TTSCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhh-CCCCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHH---
Confidence 45678888899999999987754322 2222221 23567755 33333222 2565552 33333332
Q ss_pred HHHhhhccCCceEEEE
Q 011540 299 AHVEVESVENGVGIVK 314 (483)
Q Consensus 299 i~~~A~S~~~rv~iVE 314 (483)
+.. .++ ++|.++-
T Consensus 172 L~~--~G~-~~I~~i~ 184 (340)
T 1qpz_A 172 LIE--RGH-REIGVIP 184 (340)
T ss_dssp HHH--HTC-CCEEEEC
T ss_pred HHH--CCC-CEEEEEe
Confidence 222 255 5688774
No 105
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=32.57 E-value=47 Score=30.51 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=36.0
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
.+--|+.+.+.+++++.++.+++.+|.+-|-.. +-+. ++- ....||||||-..
T Consensus 42 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 42 VSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM--VAA-----ATPLPVIGVPVPL 95 (174)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEECC
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH--HHh-----ccCCCEEEeeCCC
Confidence 444567778889999999999997777655443 3332 221 2457899999643
No 106
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=32.15 E-value=2e+02 Score=26.41 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=51.4
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~ 223 (483)
.+||++...-.-|-...++.++.+.+.. ++..++. +-.+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4799998766667777888888777753 3210221 0011111 1234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
+.++.+...++|++++.+.+.+.. ....+.+.+.+ +|||.+-
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~ 91 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFFN 91 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEec
Confidence 567788889999999988766421 12223344444 6677653
No 107
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=31.76 E-value=38 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 248 GAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 248 ~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
....|.+.+++++...-|||+|+++|+..
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 34556666777777788999999998865
No 108
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=31.34 E-value=20 Score=35.62 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g 278 (483)
..+++ +.+++.+.|.++-|||--.+..|..++ +. ++ +++|.||-|.-.|-..
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgse~ 128 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDGFS 128 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGGGT
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCCCC
Confidence 45667 777778999999999988888888777 32 34 6799999998765433
No 109
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=31.25 E-value=45 Score=30.88 Aligned_cols=118 Identities=11% Similarity=-0.008 Sum_probs=67.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcE-EEEEcccccccccCCeeccChhHHhchhccCcccccccCC-Ccc
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDE-ILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~-V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~d 221 (483)
..+||++...-.-|-...++.++-+.+.+ ++. + ++ +..+.. ...
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~--------------------------------~~~~~~~~~~ 55 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQK-EGY-TALI--------------------------------SFSTNSDVKK 55 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-EEEE--------------------------------EECSSCCHHH
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHH-CCC-CEEE--------------------------------EEeCCCChHH
Confidence 45899999877777788888888877754 332 3 22 111111 123
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC-ccccCCcCChhhHHHHHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAVIDKSFGFDTAVEEAQRAINAAH 300 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND-i~gtD~S~GfdTA~~~~~~~i~~i~ 300 (483)
..+.++.+...++|++++.+ ... +.+. ...+|||.+ |++ ++..+.++++|-.- ....+.+.+.
T Consensus 56 ~~~~~~~l~~~~vdgiIi~~--~~~-------~~~~--~~~iPvV~~----~~~~~~~~~~~V~~D~~~-~g~~a~~~L~ 119 (277)
T 3hs3_A 56 YQNAIINFENNNVDGIITSA--FTI-------PPNF--HLNTPLVMY----DSANINDDIVRIVSNNTK-GGKESIKLLS 119 (277)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCC-------CTTC--CCSSCEEEE----SCCCCCSSSEEEEECHHH-HHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCEEEEcc--hHH-------HHHH--hCCCCEEEE----cccccCCCCEEEEEChHH-HHHHHHHHHH
Confidence 45678889999999999998 111 1122 234667754 555 54332256655321 2233334333
Q ss_pred HhhhccCCceEEEEe
Q 011540 301 VEVESVENGVGIVKL 315 (483)
Q Consensus 301 ~~A~S~~~rv~iVEv 315 (483)
.++ ++|.++--
T Consensus 120 ---~G~-~~I~~i~~ 130 (277)
T 3hs3_A 120 ---KKI-EKVLIQHW 130 (277)
T ss_dssp ---TTC-CEEEEEES
T ss_pred ---hCC-CEEEEEeC
Confidence 455 46877743
No 110
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=31.18 E-value=22 Score=35.79 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi 276 (483)
..+++++.+++ +.|.++-|||-=.+..|..++-. ++ +++|.||-|-..|-
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTTa~tgS 132 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTIASTDA 132 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESSCCCSC
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCccccCc
Confidence 56777777777 99999999998888888887732 34 77999999844433
No 111
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=31.08 E-value=1.9e+02 Score=26.97 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=39.2
Q ss_pred hhccCccccccc---CCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 205 IHKRGGTILRTS---RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 205 i~~~GGs~LGTs---R~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+...|+.+.... .+..++...++.+++.+.|++|+.+.+. .+..+.+.+++.|+++++++.
T Consensus 162 l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~---~a~~~~~~~~~~g~~~~~~~~ 225 (346)
T 1usg_A 162 LKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP---EMGQMLRQARSVGLKTQFMGP 225 (346)
T ss_dssp HHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch---HHHHHHHHHHHcCCCCeEEec
Confidence 444566554432 2234667788888888999988876322 234455667778988887664
No 112
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=30.86 E-value=1.3e+02 Score=28.58 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccC---CCccHHHHHHHHHHcCC
Q 011540 159 INTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDRGI 234 (483)
Q Consensus 159 mNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR---~~~d~~~i~~~l~~~~I 234 (483)
-....+.+++.+.+ .+..+|.-+.. +..+ .+......+.+...|+.+..... +..++...++.+++.+.
T Consensus 135 ~~~~~~~~~~~l~~-~g~~~ia~i~~------~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 207 (375)
T 4evq_A 135 NGQIGRATGDAMIK-AGLKKAVTVTW------KYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKP 207 (375)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEEE------SSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCC
T ss_pred hHhHHHHHHHHHHH-cCCcEEEEEec------CchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCC
Confidence 34455666777654 34445444321 1111 11111123334556666544322 23567788888999999
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 235 d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
|++|+.+-+. .|..+.+.+++.|+++++++..
T Consensus 208 dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~~ 239 (375)
T 4evq_A 208 DCVYAFFSGG---GALKFIKDYAAANLGIPLWGPG 239 (375)
T ss_dssp SEEEEECCTH---HHHHHHHHHHHTTCCCCEEEEG
T ss_pred CEEEEecCcc---hHHHHHHHHHHcCCCceEEecC
Confidence 9998876553 3445556777889998888763
No 113
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=30.71 E-value=50 Score=30.24 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=35.7
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.+--|+.+.+.+++++.++.+++.+|.+-|-...-... ++- ....||||||-.
T Consensus 41 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-vA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 41 LSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT-IAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp CCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH-HHH-----TCSSCEEEEECC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-HHh-----cCCCCEEEeecC
Confidence 34456777788899999999999777765554432222 222 346899999954
No 114
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=30.61 E-value=83 Score=29.42 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=55.6
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------CCeeccChhHHhchhccCcccccccC
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSR 217 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs~LGTsR 217 (483)
-+++.+||+.+-.- . ...-++|+-.|..=|++ |++=-++++..+.+...|=.++--..
T Consensus 3 ~~~I~~gG~~~~~~-----------~--~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~ 69 (218)
T 3ihk_A 3 KVALFSGGDLTYFT-----------R--DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPA 69 (218)
T ss_dssp EEEEECSSCCSCCC-----------C--CCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCS
T ss_pred EEEEEECCCCccCc-----------c--cCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCC
Confidence 35666788876321 0 12468888888877654 34445666666666555433443222
Q ss_pred C--CccHHHHHHHHHHc-CCcEEEEEcCCCc
Q 011540 218 G--GHDTNKIVDNIEDR-GINQVYIIGGDGT 245 (483)
Q Consensus 218 ~--~~d~~~i~~~l~~~-~Id~LvvIGGdgS 245 (483)
. .-|++++++.+.++ +.+-++++|+.|.
T Consensus 70 eKD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 70 EKNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp SCSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CCCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 2 23789999888776 7999999999997
No 115
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=30.44 E-value=1.8e+02 Score=27.52 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=52.5
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~ 222 (483)
..+||++...-.-|-...++.++.+.+.. ++. ++. +-.+... ...
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~~ 50 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEKG 50 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHHH
Confidence 45899999766667777788888777653 221 111 0011111 123
Q ss_pred HHHHHHHHHcC--CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 223 NKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 223 ~~i~~~l~~~~--Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
.+.++.+...+ +|++++.+.+... ...+.+.+.+.+ +|||.+-..+
T Consensus 51 ~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~ 98 (332)
T 2rjo_A 51 IADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNKP 98 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCCC
T ss_pred HHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCCC
Confidence 45677777888 9999998876432 112333444445 6677664433
No 116
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=29.83 E-value=18 Score=37.77 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
..+++++.+++ +.|.++-|||--.+..|..++-. ++ +++|.||-|--.|
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTTAgtg 182 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTTASSD 182 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESSCSCS
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCCCccC
Confidence 45666677777 99999999998888888888732 34 7799999984333
No 117
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=29.19 E-value=2.8e+02 Score=26.64 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=63.5
Q ss_pred CcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccC---CCccHHHHHHH--H
Q 011540 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDN--I 229 (483)
Q Consensus 156 apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR---~~~d~~~i~~~--l 229 (483)
+|--+...+.+++.+.+.++..+|.-+.. - +..+ ..+.....+.+...|+.+..... +..++...+.. +
T Consensus 121 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~-~----~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l 195 (391)
T 3eaf_A 121 APDYSTQACSGLAFLASEFGQGKLALAYD-S----KVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREM 195 (391)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSEEEEEEEC-T----TCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEEe-c----CChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHH
Confidence 34445556666776654335445443332 1 1111 11111223344556776655433 23578888888 9
Q ss_pred HHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCC
Q 011540 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 230 ~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
++.+.|++|+.+ ++ ..+..+.+.+++.|+++++++..-+.+.+
T Consensus 196 ~~~~~dav~~~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 238 (391)
T 3eaf_A 196 LAADPDYVWCGN-TI--SSCSLLGRAMAKVGLDAFLLTNVWGFDER 238 (391)
T ss_dssp HTTCCSEEEECS-CH--HHHHHHHHHHHHHTCCCEEEECGGGCSTT
T ss_pred HHcCCCEEEEec-Cc--HHHHHHHHHHHHCCCCceEEEeccCCCHH
Confidence 999999987754 32 23445666777789999998876544433
No 118
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=29.12 E-value=1.4e+02 Score=26.99 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=54.9
Q ss_pred CccHHHHHHHHHHc-C----CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhh-HHH
Q 011540 219 GHDTNKIVDNIEDR-G----INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT-AVE 290 (483)
Q Consensus 219 ~~d~~~i~~~l~~~-~----Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdT-A~~ 290 (483)
..|+..+.+.|.++ . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+... ...+--++ ++.
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~ 135 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 135 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHH
Confidence 46888888888776 2 4777777898888888877654 4888999999993 1223211 12333333 667
Q ss_pred HHHHHHHHHHHhhhccCC
Q 011540 291 EAQRAINAAHVEVESVEN 308 (483)
Q Consensus 291 ~~~~~i~~i~~~A~S~~~ 308 (483)
.+++.=|.+|.-|-+.++
T Consensus 136 llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 136 LLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777788877776543
No 119
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=28.67 E-value=18 Score=31.96 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccc
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~g 278 (483)
+.+++++.+++.+.+-++||||-.-++.+..+.+ .+-+--+|..++.|..+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 6788888998888888999999877776665432 36678889988777643
No 120
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.66 E-value=1e+02 Score=25.07 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=47.8
Q ss_pred chhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCce
Q 011540 204 DIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263 (483)
Q Consensus 204 ~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i 263 (483)
.-++.+|..|.|.-..+|+..|++.++.++---++.+-|. |....+.+..+.++.|..-
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvsy 80 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVSY 80 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCEE
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcch
Confidence 4577888888888888899999999999998887777765 5667788888888888653
No 121
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=28.31 E-value=1.5e+02 Score=28.18 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccC---CCccHHHHHHHHHHcC
Q 011540 158 GINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDRG 233 (483)
Q Consensus 158 GmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR---~~~d~~~i~~~l~~~~ 233 (483)
.-....+.+++.+. ..+..+|.-+.. +..+ ........+.+...|+.+..... +..++...+..+++.+
T Consensus 124 ~~~~~~~~~~~~l~-~~g~~~iaii~~------~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~ 196 (364)
T 3lop_A 124 SYQQEIDKMITALV-TIGVTRIGVLYQ------EDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAAD 196 (364)
T ss_dssp CHHHHHHHHHHHHH-HTTCCCEEEEEE------TTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHH-HcCCceEEEEEe------CchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCC
Confidence 33445566677665 345445544432 1111 11111123344556666654322 3457788889999999
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 234 Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.|++|+.+.+ ..+..+.+.+++.|+++++++.
T Consensus 197 ~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~i~~ 228 (364)
T 3lop_A 197 VQAIFLGATA---EPAAQFVRQYRARGGEAQLLGL 228 (364)
T ss_dssp CSEEEEESCH---HHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCEEEEecCc---HHHHHHHHHHHHcCCCCeEEEe
Confidence 9998887633 2345566777788998876654
No 122
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=28.13 E-value=3.2e+02 Score=24.36 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=53.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~~ 224 (483)
+|||++...-.-|-...+++++-+.+.+ ++. ++.- ...+ +........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~~-------------~~~~----------------~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AGV-TLLH-------------RSTK----------------DDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HTC-EEEE-------------CCCS----------------STTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEEE-------------ECCC----------------CCCCHHHHHH
Confidence 4899999888888888899998887764 332 2220 0000 0011122345
Q ss_pred HHHHHHHcC-CcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 225 IVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 225 i~~~l~~~~-Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
.++.+...+ +|++++.+-+..... ...+.+.+.+ +|||.+-
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~~--~~~~~~~~~~--ipvV~~~ 91 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDLT--PSVAQYRARN--IPVLVVD 91 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTTH--HHHHHHHHTT--CCEEEES
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHH--HHHHHHHHCC--CcEEEEe
Confidence 677888888 999999986533211 1223344445 5677653
No 123
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=27.92 E-value=47 Score=30.32 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=35.2
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCCc-hHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS-~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
.+--|+++.+.+.++++++.+++.++.+-|-.. +-+. ++- ....||||||-..
T Consensus 40 ~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~~ 93 (166)
T 3oow_A 40 VSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM--VAA-----KTTLPVLGVPVKS 93 (166)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECCC
T ss_pred EcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH--HHh-----ccCCCEEEeecCc
Confidence 334466677788888888889988877765544 3332 221 3468999999643
No 124
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=27.81 E-value=3.9e+02 Score=25.15 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=46.3
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCcc
Q 011540 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (483)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d 221 (483)
.+..||||++.- .=|.++++-.|+...|.. .| +.++.-+++. +.+..|. ...
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~-~G-------------~~~g~nv~~~------~~~a~gd-------~~~ 57 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKA-KG-------------YEEGKNLEFD------YKTAQGN-------PAI 57 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHH-TT-------------CCBTTTEEEE------EEECTTC-------HHH
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHh-hC-------------cccCCcEEEE------EEeCCCC-------HHH
Confidence 456799999873 679999999999998864 22 1122222221 1111111 123
Q ss_pred HHHHHHHHHHcCCcEEEEEc
Q 011540 222 TNKIVDNIEDRGINQVYIIG 241 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIG 241 (483)
...+++.|...++|.++.||
T Consensus 58 ~~~~~~~l~~~~~DlIiai~ 77 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHhcCCcEEEEcC
Confidence 56788999999999888776
No 125
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.58 E-value=3.7e+02 Score=24.85 Aligned_cols=82 Identities=20% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc--CCcCChhh--HHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRAINA 298 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt--D~S~GfdT--A~~~~~~~i~~ 298 (483)
.+.++.+...++|++++.+.+.... ....+.+.+.+ +|||.+ |++.+.. ..++++|- +...++ +.
T Consensus 47 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~~~g~~a~---~~ 115 (313)
T 2h3h_A 47 LQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEMG--IPVVTL----DTDSPDSGRYVYIGTDNYQAGYTAG---LI 115 (313)
T ss_dssp HHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHHHHHHHHH---HH
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CeEEEe----CCCCCCcceeEEECcCHHHHHHHHH---HH
Confidence 4567777788999999988765421 11223334445 567765 4444321 23455543 223333 32
Q ss_pred HHHhhhccCCceEEEEec
Q 011540 299 AHVEVESVENGVGIVKLM 316 (483)
Q Consensus 299 i~~~A~S~~~rv~iVEvM 316 (483)
+......+ ++|.++--.
T Consensus 116 L~~~~~G~-~~I~~i~~~ 132 (313)
T 2h3h_A 116 MKELLGGK-GKVVIGTGS 132 (313)
T ss_dssp HHHHHTSC-SEEEEEESC
T ss_pred HHHHcCCC-CEEEEEECC
Confidence 32222244 568877543
No 126
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=27.54 E-value=1.7e+02 Score=25.63 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhH-HhchhccCcccccccCC-C-
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV-VNDIHKRGGTILRTSRG-G- 219 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~-v~~i~~~GGs~LGTsR~-~- 219 (483)
.+.||.+.+.||+.--+..-+-+.. .... +.+|+ |.|. ..++++ ++......-.++|.|-. .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~---l~~~-G~eVi-----~lG~------~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARA---LRDA-GFEVV-----YTGL------RQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHH---HHHT-TCEEE-----CCCS------BCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH---HHHC-CCEEE-----ECCC------CCCHHHHHHHHHhcCCCEEEEEeechh
Confidence 3458899999998865554333322 2223 34665 2221 134443 34444444556664432 2
Q ss_pred --ccHHHHHHHHHHcCC-cEEEEEcCCCc
Q 011540 220 --HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (483)
Q Consensus 220 --~d~~~i~~~l~~~~I-d~LvvIGGdgS 245 (483)
..+.++++.|++.+. +..+++||.-.
T Consensus 82 ~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 356788888888876 67788888643
No 127
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=27.50 E-value=1.3e+02 Score=27.73 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=32.7
Q ss_pred ChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCCCc-chHHHHHhh
Q 011540 284 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS-GFISMYATL 329 (483)
Q Consensus 284 GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~-G~LA~~aaL 329 (483)
-|.++++-+..+++.+...+.. .++++ +||-++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i~---l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSFG---LCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCEE---EEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcEE---EEEECHHHHHHHHHHH
Confidence 7899999999999988876643 34555 578887 689988887
No 128
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=27.46 E-value=1.2e+02 Score=29.39 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=43.8
Q ss_pred eccChhHHhchhccCcccccccCC-CccHHHHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHHHH
Q 011540 195 LTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVE 257 (483)
Q Consensus 195 ~~L~~~~v~~i~~~GGs~LGTsR~-~~d~~~i~~~l~~~~Id~LvvIG----GdgS~~~A~~L~~~~~ 257 (483)
++++++++-.....++ .--||.- ..++.++.+.+.+.+ +.+++|. =-||+.+|...++.+.
T Consensus 43 ~di~~~efy~~~~~~~-~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~ 108 (289)
T 1pzx_A 43 ITIEPKQVYDAMRQGH-TVKTAQPSPLAMKELFLPYAKEN-RPCLYIAFSSKLSGTYQTAMAVRSELL 108 (289)
T ss_dssp TTBCHHHHHHHHTTTC-CCEEECCCHHHHHHHHHHHHHTT-CCEEEEECCTTTCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCC-CCeeCCCCHHHHHHHHHHHHhCC-CeEEEEECCCchhHHHHHHHHHHHhhH
Confidence 5689988888877777 5567664 346777777776666 5666663 4788988887777654
No 129
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=27.28 E-value=52 Score=33.38 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHcC--C---cEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 220 HDTNKIVDNIEDRG--I---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 220 ~d~~~i~~~l~~~~--I---d~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
+..+++++.+.+.+ + |.++-+||--....|..++-.. .++ +++|.||-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 45789999999999 9 9999999987777777665432 345 6799999984
No 130
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=27.12 E-value=1.4e+02 Score=28.33 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccC---CCccHHHHHHHHHHcCC
Q 011540 159 INTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDRGI 234 (483)
Q Consensus 159 mNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR---~~~d~~~i~~~l~~~~I 234 (483)
-....+.+++.+.+ .+..+|.-+... ..+ ........+.+...|+.+..... +..++...+..+++.+.
T Consensus 123 ~~~~~~~~~~~l~~-~g~~~ia~i~~~------~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 195 (368)
T 4eyg_A 123 LAQSSIIIGDWAAK-NGIKKVATLTSD------YAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKP 195 (368)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEEES------SHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHH-cCCCEEEEEecC------chHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCC
Confidence 34455667777654 354455444311 111 11111123345556776654432 33577888899999999
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcCCc---eeEeeec
Q 011540 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIP 269 (483)
Q Consensus 235 d~LvvIGGdgS~~~A~~L~~~~~~~g~~---i~VvgIP 269 (483)
|++++.+.+. .+..+.+.+++.|++ +++++..
T Consensus 196 d~v~~~~~~~---~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 196 DAMFVFVPAG---QGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp SEEEEECCTT---CHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred CEEEEeccch---HHHHHHHHHHHcCCCcCCceEEecC
Confidence 9999977655 233445566677877 6777654
No 131
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=26.93 E-value=74 Score=31.55 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=59.5
Q ss_pred ccccCCCCeeEEEEc-cCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccc--ccCCeeccChhHHhchhccCcccc
Q 011540 137 KVYFKSDEVRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF--YSKNTLTLSPKVVNDIHKRGGTIL 213 (483)
Q Consensus 137 ~~~~~~~~~~iaIvt-sGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL--~~~~~~~L~~~~v~~i~~~GGs~L 213 (483)
++|++ +.|+++||| |+.+-|- ... +.++. .|+-+.-=+.|= +.+..++++++++-.....+..+-
T Consensus 19 ~~~~~-~~Mki~IvtDSt~dL~~------e~~----~~~~I-~vvPL~v~~~~~~~Y~D~~~di~~~efy~~m~~~~~~p 86 (313)
T 1mgp_A 19 NLYFQ-GHMKVKILVDSTADVPF------SWM----EKYDI-DSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSVP 86 (313)
T ss_dssp -------CCCEEEEEEGGGCCCT------THH----HHTTE-EEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCSSCC
T ss_pred hhhhc-CCCCEEEEEECCCCCCH------HHH----HhCCe-EEEEEEEEECCEEEEeCCCcCCCHHHHHHHHHhCCCCc
Confidence 56665 345899999 6555551 111 22442 333222112221 222215688888777777766555
Q ss_pred cccCC-CccHHHHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHH
Q 011540 214 RTSRG-GHDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKE 255 (483)
Q Consensus 214 GTsR~-~~d~~~i~~~l~~~~Id~LvvIG----GdgS~~~A~~L~~~ 255 (483)
-||-- ..++.++.+.+.+.+-|.+++|. =.||+.+|...++.
T Consensus 87 kTSqPs~~~~~e~f~~l~~~g~d~Ii~I~iSs~LSGTy~sA~~Aa~~ 133 (313)
T 1mgp_A 87 KTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKE 133 (313)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCeEEEEECCccHhHHHHHHHHHHhc
Confidence 66663 34677777777777887777774 46788888776654
No 132
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.80 E-value=3.8e+02 Score=24.70 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=39.9
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccc-ccCCCccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR-TSRGGHDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LG-TsR~~~d~ 222 (483)
..+|||+ ..-.-|-...+++++-+.+.. + ||.| .++ .+ .+. |.+..+..
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~l~~-~----------gy~g---~~v-~l--------------~~~~~~~~~~~~ 51 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDGLAE-E----------GYKD---DQV-KI--------------DFMNSEGDQSKV 51 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHHHHH-T----------TCCG---GGE-EE--------------EEEECTTCHHHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHHHHH-c----------CCCC---Cce-EE--------------EEecCCCCHHHH
Confidence 3589988 334456677788888777753 2 2211 010 00 011 11222234
Q ss_pred HHHHHHHHHcCCcEEEEEc
Q 011540 223 NKIVDNIEDRGINQVYIIG 241 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIG 241 (483)
.+.++.|.+.++|+++++|
T Consensus 52 ~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 52 ATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHHhcCCCEEEECC
Confidence 5778889999999999986
No 133
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=26.79 E-value=23 Score=31.27 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHH--HHHHHHHcCCceeEeeecccccC
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDN 274 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~--L~~~~~~~g~~i~VvgIPkTIDN 274 (483)
.+.+++++.|++.+++-++|+||-.-+..+.. |.+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 36889999999999999999999776665544 332 3667888888754
No 134
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=25.85 E-value=3.1e+02 Score=27.83 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCC-eeccChhHHhchhccCcccccccCCC
Q 011540 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN-TLTLSPKVVNDIHKRGGTILRTSRGG 219 (483)
Q Consensus 141 ~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~-~~~L~~~~v~~i~~~GGs~LGTsR~~ 219 (483)
.|..+||.|+-+|| --++.. ..+.+..+..+||.. .|-.|..... .+.+ ..
T Consensus 18 ~p~~m~ilvlG~gg---re~ala----~~l~~s~~v~~v~~~-pgn~g~~~~~~~~~i--------------------~~ 69 (442)
T 3lp8_A 18 GPGSMNVLVIGSGG---REHSML----HHIRKSTLLNKLFIA-PGREGMSGLADIIDI--------------------DI 69 (442)
T ss_dssp --CCEEEEEEECSH---HHHHHH----HHHTTCTTEEEEEEE-ECCGGGTTTSEECCC--------------------CT
T ss_pred CCCCCEEEEECCCh---HHHHHH----HHHHhCCCCCEEEEE-CCChHHhhccceeec--------------------Cc
Confidence 46778999998873 233333 334444444566654 3444443221 1111 12
Q ss_pred ccHHHHHHHHHHcCCcEEEE
Q 011540 220 HDTNKIVDNIEDRGINQVYI 239 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~Lvv 239 (483)
.|.+.+++.++++++|.+++
T Consensus 70 ~d~~~l~~~a~~~~id~vv~ 89 (442)
T 3lp8_A 70 NSTIEVIQVCKKEKIELVVI 89 (442)
T ss_dssp TCHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCEEEE
Confidence 35667777777777775554
No 135
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=25.01 E-value=57 Score=31.74 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCeeEEEEc-cCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCC-Cc
Q 011540 143 DEVRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (483)
Q Consensus 143 ~~~~iaIvt-sGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~-~~ 220 (483)
..+|++||| |+.+-| ....+.++ ..++-++-=+.|=.-.+-++++++++-.....++.+--||.- ..
T Consensus 2 ~~Mki~IvtDSt~dl~----------~e~~~~~~-I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps~~ 70 (285)
T 3lup_A 2 NAMKLALITDTSAYLP----------EAIENHED-VYVLDIPIIIDGKTYIEGQNLTLDQYYDKLAASKELPKTSQPSLA 70 (285)
T ss_dssp -CCCEEEEEETTBCCC----------TTTTTCTT-EEEECCCEESSSSCCCBTTTBCHHHHHHHHHHCSSCCEECCCCHH
T ss_pred CCCCEEEEEECCCCCC----------HHHHHHCC-eEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCCHH
Confidence 357899999 655555 11122233 234332222222111123578988888887777766667764 35
Q ss_pred cHHHHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHH
Q 011540 221 DTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKE 255 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIG----GdgS~~~A~~L~~~ 255 (483)
++.++.+.+.+.+-|.+++|. =-||+.+|...+++
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~ 109 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEE 109 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHh
Confidence 788888888888888888875 46778887766553
No 136
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=24.55 E-value=2e+02 Score=28.02 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred eeEEEEc-cCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 145 VRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 145 ~~iaIvt-sGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
++++||| |..+-| .... +.++. .++-++-=+.|=.-.+-++++++++-.....++.+.-||. +...
T Consensus 20 Mki~IvtDSt~dL~------~e~~----~~~~I-~vvPL~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSq--ps~~ 86 (298)
T 3jr7_A 20 MSYKVIVDSCGEFT------PEMK----ADGGF-EHVALGIQIEDTQWTDDDSLKQEELLLKIAESTSCAKTSC--PSPE 86 (298)
T ss_dssp CCEEEEEETTSCCC------HHHH----HHSSE-EEECCEEEETTEEEECSTTSCHHHHHHHHHHCSSCCEEEC--CCHH
T ss_pred CCEEEEEECCCCCC------HHHH----HhCCe-EEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCC--CCHH
Confidence 5899999 666666 1222 23442 3332221122211112257899888888777776666665 3445
Q ss_pred HHHHHHHHcCCcEEEEEc----CCCchHHHHHHHHHHHH-c-CCceeEeeecccccCCccccCCcCChhhHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVEK-R-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIG----GdgS~~~A~~L~~~~~~-~-g~~i~VvgIPkTIDNDi~gtD~S~GfdTA~~~~~~~i~ 297 (483)
...+.+++ +-+.+++|. =-||+.+|...++.+.+ + +.+|.|| |.- -.|.|..=.+..+++.++
T Consensus 87 ~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi------DS~----~~s~g~g~lv~~Aa~l~~ 155 (298)
T 3jr7_A 87 RYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF------NSR----SASVGETLIALKVQQCEK 155 (298)
T ss_dssp HHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE------ECS----SCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE------CCC----chhHHHHHHHHHHHHHHH
Confidence 55666665 567777763 57889988877776643 2 3444443 211 125555555555555443
Q ss_pred ----------HHHHhhhccCCceEEEEec
Q 011540 298 ----------AAHVEVESVENGVGIVKLM 316 (483)
Q Consensus 298 ----------~i~~~A~S~~~rv~iVEvM 316 (483)
.+..-... -+-+|+|+..
T Consensus 156 ~G~s~eeI~~~l~~~~~~-~~~~f~v~~L 183 (298)
T 3jr7_A 156 AGMTFEEVVESVECYIEE-QHTYFVLENL 183 (298)
T ss_dssp TTCCHHHHHHHHHHHHHH-CCEEEECSCC
T ss_pred cCCCHHHHHHHHHHHHhh-CeEEEEeCCh
Confidence 22222222 2457888875
No 137
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.34 E-value=3.5e+02 Score=24.43 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=50.5
Q ss_pred CeeEEEEccCCC--CcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccccc-CCC-
Q 011540 144 EVRACIVTCGGL--CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-RGG- 219 (483)
Q Consensus 144 ~~~iaIvtsGG~--apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTs-R~~- 219 (483)
..+||++...-. .|-...+++++-+.+.. ++ .++. + ..+. ...
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------~------------------~~~~~~~~~ 51 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-IKLE-------------F------------------MAPEKEEDY 51 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-CEEE-------------E------------------CCCSSTTCH
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------E------------------ecCCCCCCH
Confidence 458999987655 67777888888777753 22 1221 0 0000 111
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
....+.++.+...++|++++.+.+.... ....+.+.+.+ +|||.+
T Consensus 52 ~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--iPvV~~ 96 (289)
T 3brs_A 52 LVQNELIEEAIKRKPDVILLAAADYEKT--YDAAKEIKDAG--IKLIVI 96 (289)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSCTTTT--HHHHTTTGGGT--CEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHHCC--CcEEEE
Confidence 2234567788889999999998765421 11222233334 667765
No 138
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=24.33 E-value=52 Score=30.46 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=35.5
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCC-CchHHHHHHHHHHHHcCCceeEeeecccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~~~~g~~i~VvgIPkTI 272 (483)
.+--|+.+.+.+++++.++.+++.+|.+-|- +.+-+.. +- ....||||||-..
T Consensus 48 ~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 48 VSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMV--AS-----ITHLPVIGVPVKT 101 (183)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHH--Hh-----ccCCCEEEeeCCC
Confidence 4445777778888888888899977766444 4444432 21 2458899999755
No 139
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=24.00 E-value=2.9e+02 Score=29.30 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCcEEEEE--------cCCC--chHHHHHHHHHHHHcCCceeEe--------------eec--c-----
Q 011540 222 TNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP--K----- 270 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvI--------GGdg--S~~~A~~L~~~~~~~g~~i~Vv--------------gIP--k----- 270 (483)
++.=++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++.+| .|| .
T Consensus 36 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 115 (498)
T 1fa2_A 36 VEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQI 115 (498)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4566788999999999862 2333 3556678889999999998887 344 2
Q ss_pred -cccCCccccCC---------cCChh--------hHHHHHHHHHHHHHHhhhcc
Q 011540 271 -TIDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 271 -TIDNDi~gtD~---------S~Gfd--------TA~~~~~~~i~~i~~~A~S~ 306 (483)
.=|.||..||. |+|.| |+++.+.+...+-+++-..-
T Consensus 116 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 169 (498)
T 1fa2_A 116 GDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADF 169 (498)
T ss_dssp TTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHH
T ss_pred hccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 23458998884 88988 88999999999888776554
No 140
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=23.72 E-value=82 Score=29.59 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=57.0
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccccc---------CCeeccChhHHhchhccCcccccccC
Q 011540 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSR 217 (483)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~---------~~~~~L~~~~v~~i~~~GGs~LGTsR 217 (483)
-+++.+||+.+-... ...+ ...-++|+-.|..=|++ |++=-++++..+.+...|=.++--..
T Consensus 3 ~~~I~~gG~~~~~~~-------~~~~--~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~ 73 (222)
T 3mel_A 3 RVLLVAGGNPSDWPT-------IEPA--TYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPA 73 (222)
T ss_dssp EEEEECSSCGGGCCC-------CCGG--GCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCS
T ss_pred EEEEEECCCCccchh-------HHhh--cCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCc
Confidence 356667888773221 0111 12368899999887765 34445566666666655433332122
Q ss_pred C--CccHHHHHHHHHHcCCc-EEEEEcCCCc
Q 011540 218 G--GHDTNKIVDNIEDRGIN-QVYIIGGDGT 245 (483)
Q Consensus 218 ~--~~d~~~i~~~l~~~~Id-~LvvIGGdgS 245 (483)
. .-|++++++.+.+++-+ -++++|+.|.
T Consensus 74 eKD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 74 EKDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp SCSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred cCCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 2 23788999999998887 9999999996
No 141
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=23.69 E-value=1.4e+02 Score=30.40 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=22.3
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEccccccc
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF 189 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL 189 (483)
+.+||.|+-+||- -+ ++...+.+..++.+||.. .|-.|.
T Consensus 2 ~~mkvlviG~ggr---e~----ala~~l~~s~~v~~v~~~-pgn~g~ 40 (431)
T 3mjf_A 2 NAMNILIIGNGGR---EH----ALGWKAAQSPLADKIYVA-PGNAGT 40 (431)
T ss_dssp -CEEEEEEECSHH---HH----HHHHHHTTCTTEEEEEEE-ECCHHH
T ss_pred CCcEEEEECCCHH---HH----HHHHHHHhCCCCCEEEEE-CCCHHH
Confidence 3579999988852 22 344444444444577766 354444
No 142
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=23.50 E-value=2.8e+02 Score=25.48 Aligned_cols=120 Identities=8% Similarity=0.008 Sum_probs=66.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccHH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~~ 223 (483)
..+||++. .-.-|-...++.++-+.+.+ ++. ++.-+ .+....+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~--------------------------------~~~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RGY-DVMLS--------------------------------AVAPSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TTC-EEEEE--------------------------------EEBTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CCC-EEEEE--------------------------------eCCCCHHHH
Confidence 34799998 66677777888888777753 332 33211 011111245
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCccccC-CcCChhh--HHHHHHHHHHHHH
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAINAAH 300 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gtD-~S~GfdT--A~~~~~~~i~~i~ 300 (483)
+.++.|...++|++++.+.+.+.. ..+.+.+ + +|||.+ |++++..+ .++++|- +...++ +.+.
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~-~--iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~---~~L~ 122 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTD----ELGALAD-R--VPALVV----ARASGLPGVGAVRGDDVAGITLAV---DHLT 122 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT-T--SCEEEE----SSCCSSTTSEEEEECHHHHHHHHH---HHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc-C--CCEEEE----cCCCCCCCCCEEEeChHHHHHHHH---HHHH
Confidence 677788889999999999877542 2233333 4 667754 44443221 2444442 233333 3222
Q ss_pred HhhhccCCceEEEEe
Q 011540 301 VEVESVENGVGIVKL 315 (483)
Q Consensus 301 ~~A~S~~~rv~iVEv 315 (483)
. .++ ++|.++--
T Consensus 123 ~--~G~-~~I~~i~~ 134 (289)
T 3k9c_A 123 E--LGH-RNIAHIDG 134 (289)
T ss_dssp H--TTC-CSEEEECC
T ss_pred H--CCC-CcEEEEeC
Confidence 2 354 46887753
No 143
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=23.29 E-value=3.9e+02 Score=26.47 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCCeeEEEEccCCCC-cchhHHHHHHHHHHHHhCCC-cEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC
Q 011540 142 SDEVRACIVTCGGLC-PGINTVIREIVCGLSYMYGV-DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (483)
Q Consensus 142 ~~~~~iaIvtsGG~a-pGmNavIr~iv~~~~~~~~~-~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~ 219 (483)
.+.+|||+|+.|+.. -+-|..+..-+..+.+.++. .++. + +-+....
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~-------------~------------------~e~~~~~ 72 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETT-------------F------------------LENVAEG 72 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEE-------------E------------------ECSCCTT
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEE-------------E------------------EecCCCH
Confidence 456899999988754 47777554444444333431 1111 1 1111223
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.+.++.++.|.+.+.|.+|.. |+.-.....++++ ++ -+++++.+
T Consensus 73 ~d~~~~l~~l~~~g~d~Ii~~-g~~~~~~~~~vA~---~~-Pdv~fv~i 116 (356)
T 3s99_A 73 ADAERSIKRIARAGNKLIFTT-SFGYMDPTVKVAK---KF-PDVKFEHA 116 (356)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC-SGGGHHHHHHHHT---TC-TTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEC-CHHHHHHHHHHHH---HC-CCCEEEEE
Confidence 466788899999999955554 4554443333332 32 24667765
No 144
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=22.98 E-value=58 Score=30.15 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=34.3
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCCC-chHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdg-S~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.+--|+.+.+.+++++.++.+++.+|.+-|-. .+-+. ++- ....||||||-.
T Consensus 56 ~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 108 (182)
T 1u11_A 56 VSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM--CAA-----WTRLPVLGVPVE 108 (182)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEEC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 44456667778888888888899777664443 34433 221 245889999965
No 145
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.92 E-value=4.3e+02 Score=24.01 Aligned_cols=85 Identities=7% Similarity=-0.053 Sum_probs=50.3
Q ss_pred eeEEEEccC-C---CCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCc
Q 011540 145 VRACIVTCG-G---LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (483)
Q Consensus 145 ~~iaIvtsG-G---~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~ 220 (483)
.+||++... - ..|-...++.++-+.+.. ++ .++.- . + +.....
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-~--------------~----------------~~~~~~ 51 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-YFVLP-F--------------P----------------FSEDRS 51 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-CEEEE-C--------------C----------------CCSSTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-CEEEE-E--------------e----------------CCCchH
Confidence 478998865 3 567777888888877753 33 22220 0 0 000112
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
...+.++.+...++|++++.+.+.+-. ..+.+.+.+ +|||.+
T Consensus 52 ~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 93 (287)
T 3bbl_A 52 QIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF 93 (287)
T ss_dssp CCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE
Confidence 234567788889999999998765432 223344445 567765
No 146
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.88 E-value=1.5e+02 Score=28.68 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=56.4
Q ss_pred ccccccCCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCccccc
Q 011540 135 REKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR 214 (483)
Q Consensus 135 r~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LG 214 (483)
...+||.+....|||.=|| - |.-.|.+.+.+. .+..+++-+-+=-. --|=+-+|+.+..+
T Consensus 15 ~~~~~~~~~~~~IgvfDSG--v-GGLtv~~~i~~~----lP~e~~iy~~D~a~----~PYG~ks~e~i~~~--------- 74 (274)
T 3uhf_A 15 TENLYFQSNAMKIGVFDSG--V-GGLSVLKSLYEA----RLFDEIIYYGDTAR----VPYGVKDKDTIIKF--------- 74 (274)
T ss_dssp --CCCCCCSCCEEEEEESS--S-TTHHHHHHHHHT----TCCSEEEEEECTTT----CCCTTSCHHHHHHH---------
T ss_pred cceeeccCCCCeEEEEECC--C-ChHHHHHHHHHH----CCCCCEEEEecCCC----CCCCCCCHHHHHHH---------
Confidence 3467888888999999986 2 333477776553 35556653332000 00112233333222
Q ss_pred ccCCCccHHHHHHHHHHcCCcEEEEEcCCCchHHHHHH-HHHHHHcCCceeEeee
Q 011540 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALI-YKEVEKRGLQVAVAGI 268 (483)
Q Consensus 215 TsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L-~~~~~~~g~~i~VvgI 268 (483)
..++++.|++.+++++++-.- +|... .+++++ .+++||+||
T Consensus 75 -------~~~~~~~L~~~g~d~IVIACN-----Ta~~~al~~lr~-~~~iPvigi 116 (274)
T 3uhf_A 75 -------CLEALDFFEQFQIDMLIIACN-----TASAYALDALRA-KAHFPVYGV 116 (274)
T ss_dssp -------HHHHHHHHTTSCCSEEEECCH-----HHHHHSHHHHHH-HCSSCEECS
T ss_pred -------HHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHH-hcCCCEEcC
Confidence 356778999999998877542 23322 233333 356889986
No 147
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=22.51 E-value=4.9e+02 Score=24.46 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcC
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g 260 (483)
..+.+.+.++++++|.++.. -+.....+..+.+.+++.|
T Consensus 60 ~~~~l~~~~~~~~~d~vi~~-~~~~~~~~a~~~~~l~~~g 98 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLTL-IDPELGLLAQATERFQAIG 98 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEES-SHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCEEEeC-CchhHHHHHHHHHHHHhCC
Confidence 46788888888899876652 2222223333445554434
No 148
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=22.43 E-value=4.9e+02 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=21.1
Q ss_pred CCCeeEEEEc--cCCCCcchhHHHHHHHHHHHH
Q 011540 142 SDEVRACIVT--CGGLCPGINTVIREIVCGLSY 172 (483)
Q Consensus 142 ~~~~~iaIvt--sGG~apGmNavIr~iv~~~~~ 172 (483)
+.+.|||++. +|..++-.....+++-..+..
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~ 46 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEE 46 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHH
Confidence 4578999998 676666667777777666543
No 149
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=22.34 E-value=6e+02 Score=25.42 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=74.2
Q ss_pred Hhchhcc-CcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCCc---hHHHHHHHHHHHHcCCceeEeeeccccc---C
Q 011540 202 VNDIHKR-GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKTID---N 274 (483)
Q Consensus 202 v~~i~~~-GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdgS---~~~A~~L~~~~~~~g~~i~VvgIPkTID---N 274 (483)
+...... |-+++++..-+.++.-.....++.....+++.|=|-+ +..+..|.++++++|++...++-.-|.. .
T Consensus 136 l~~~A~~~Gv~i~dvr~~p~~l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~ 215 (350)
T 2g0t_A 136 FLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGA 215 (350)
T ss_dssp HHHHHHHHTCCEEESSSCCSSCCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTC
T ss_pred HHHHHHHCCCEEEEeCcCCCcccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeecc
Confidence 3334444 5578877443322211112223345667888886654 6677888899999999877777555532 3
Q ss_pred CccccCCcCChhhHHHHHHHHHHHHHHhhhccCCceEEEEecCC--CcchHHHHHhhhcC-CCcEEec
Q 011540 275 DIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR--YSGFISMYATLASR-DVDCCLI 339 (483)
Q Consensus 275 Di~gtD~S~GfdTA~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR--~~G~LA~~aaLA~~-~ad~vlI 339 (483)
|....--.+-++-+.-.....+-.+. ..+..+.+||-+|. +..+.....+|..+ .+|.+++
T Consensus 216 ~~gv~~D~~~~~~~ag~~e~~i~~~~----~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 216 DAGYVIDAVPADFVSGVVEKAVLKLE----KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp SEECCGGGSBGGGHHHHHHHHHHHHH----HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCCceecchhhHHHHhhHHHhh----hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 32211123444444333333333332 22346999999985 34555434444332 6888887
No 150
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=22.32 E-value=2.7e+02 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=26.2
Q ss_pred ccChhHHhchhccCcccccccCCCccHHHHHHHHHHcCCcEEEEEcCCC
Q 011540 196 TLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 244 (483)
Q Consensus 196 ~L~~~~v~~i~~~GGs~LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGdg 244 (483)
-+....++.+...||..+=-.- ..+.+ +.+.|. ++|+|++-||.+
T Consensus 28 ~~~~~~~~~l~~aG~~pv~lp~-~~~~~-~~~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 28 YTQQRYVDAIQKVGGFPIALPI-DDPST-AVQAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp --CHHHHHHHHHHTCEEEEECC-CCGGG-HHHHHH--TCSEEEECCCSC
T ss_pred hhhHHHHHHHHHCCCEEEEEeC-CCchH-HHHHHh--hCCEEEECCCCC
Confidence 3566677888888885331111 12222 333444 599999999965
No 151
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=22.05 E-value=73 Score=29.23 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=37.3
Q ss_pred cccccCCCccHHHHHHHHHHcCCcEEEEE-cCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 212 ILRTSRGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 212 ~LGTsR~~~d~~~i~~~l~~~~Id~LvvI-GGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
+.+--|+.+.+.++++..+.++++.+|.+ ||.+.+-+...= ....||||||-.
T Consensus 46 V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~-------~t~~PVIgVPv~ 99 (173)
T 4grd_A 46 VVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA-------KTTVPVLGVPVA 99 (173)
T ss_dssp ECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH-------HCCSCEEEEEEC
T ss_pred EEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee-------cCCCCEEEEEcC
Confidence 34455777778888888889999987765 555656554321 145889999965
No 152
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.89 E-value=1.2e+02 Score=25.10 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecc
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPk 270 (483)
.+.+.+++++++.+++--+..+......+.+.+.+.++ .|..+|-
T Consensus 56 ~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv--~v~~vP~ 100 (141)
T 3nkl_A 56 YLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHV--EVLTIPN 100 (141)
T ss_dssp GHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTC--EEEECCC
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC--eEEECCC
Confidence 45566778999999887777666666778888877775 4777774
No 153
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=21.85 E-value=3.4e+02 Score=28.76 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCcEEEEE--------cCCC--chHHHHHHHHHHHHcCCceeEe--------------eec--c-----
Q 011540 222 TNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP--K----- 270 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvI--------GGdg--S~~~A~~L~~~~~~~g~~i~Vv--------------gIP--k----- 270 (483)
++.=++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++.+| .|| .
T Consensus 35 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 114 (495)
T 1wdp_A 35 LKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDI 114 (495)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4566788999999999862 2333 3556678889899999998887 344 3
Q ss_pred -cccCCccccCC---------cCChh--------hHHHHHHHHHHHHHHhhhcc
Q 011540 271 -TIDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESV 306 (483)
Q Consensus 271 -TIDNDi~gtD~---------S~Gfd--------TA~~~~~~~i~~i~~~A~S~ 306 (483)
.=|.||..||. |+|.| |+++.+.+...+-+++-..-
T Consensus 115 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~ 168 (495)
T 1wdp_A 115 GESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDF 168 (495)
T ss_dssp HHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHH
T ss_pred hccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 23458998884 88888 78999999999888776654
No 154
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=21.64 E-value=4.5e+02 Score=23.75 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=49.9
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccHH
Q 011540 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (483)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~~ 223 (483)
.+||++...-..|-...++.++.+.+.. ++. ++. +-.+... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~~ 48 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LGY-EAT--------------------------------IFDSQNDTAKES 48 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TTC-EEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EeCCCCCHHHHH
Confidence 4799998766667777788888777753 221 221 0011111 1234
Q ss_pred HHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 224 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
+.++.+...++|++++.+.+.... ....+.+.+.+ +|||.+
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~ 89 (290)
T 2fn9_A 49 AHFDAIIAAGYDAIIFNPTDADGS--IANVKRAKEAG--IPVFCV 89 (290)
T ss_dssp HHHHHHHHTTCSEEEECCSCTTTT--HHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHCC--CeEEEE
Confidence 567777888999999988765421 11223344445 567765
No 155
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=21.55 E-value=1e+02 Score=27.84 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=34.5
Q ss_pred ccccCCCccHHHHHHHHHHc-CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~-~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.+--|+.+.+.+++++.++. +++.+|.+-|-...-... ++- ....||||||-.
T Consensus 37 ~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv-vA~-----~t~~PVIgVP~~ 90 (159)
T 3rg8_A 37 GSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF-VDG-----FVKGATIACPPP 90 (159)
T ss_dssp CCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH-HHH-----HSSSCEEECCCC
T ss_pred EcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH-HHh-----ccCCCEEEeeCC
Confidence 44456667778888888875 688888876655443322 222 145789999943
No 156
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.50 E-value=52 Score=30.11 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=34.5
Q ss_pred ccccCCCccHHHHHHHHHHcCCcEEEEEcCC-CchHHHHHHHHHHHHcCCceeEeeeccc
Q 011540 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (483)
Q Consensus 213 LGTsR~~~d~~~i~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~~~~g~~i~VvgIPkT 271 (483)
.+--|+.+.+.+++++.++.+++.+|.+-|- +.+-+. ++- ....||||||-.
T Consensus 46 ~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 98 (170)
T 1xmp_A 46 VSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--VAA-----KTNLPVIGVPVQ 98 (170)
T ss_dssp CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHT-----TCCSCEEEEEEC
T ss_pred EeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--HHh-----ccCCCEEEeeCC
Confidence 4445777777888888888889977666444 334333 221 346899999965
No 157
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=21.46 E-value=66 Score=28.11 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCceeEeeecccccCC
Q 011540 250 ALIYKEVEKRGLQVAVAGIPKTIDND 275 (483)
Q Consensus 250 ~~L~~~~~~~g~~i~VvgIPkTIDND 275 (483)
..|.+.+++++...-|||+|+++|+.
T Consensus 43 ~~l~~li~e~~v~~iVvGlP~~mdGt 68 (138)
T 1nu0_A 43 NIIERLLKEWQPDEIIVGLPLNMDGT 68 (138)
T ss_dssp HHHHHHHHHHCCSEEEEEEEECTTSC
T ss_pred HHHHHHHHHcCCCEEEEecccCCCcC
Confidence 34444455556667799999999874
No 158
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=21.43 E-value=76 Score=31.07 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEcccccccccCCe-eccChhHHhchhccCcccccccCCC--ccHHHHHHHHHHcCCcEEEE
Q 011540 163 IREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYI 239 (483)
Q Consensus 163 Ir~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~-~~L~~~~v~~i~~~GGs~LGTsR~~--~d~~~i~~~l~~~~Id~Lvv 239 (483)
.+.+++.+.+ .+..++.-+.. ++.| ..+.....+.|...||++.++.++. .|+...+..+ ..+.|++|+
T Consensus 110 ~~~~a~~a~~-~g~k~vail~~------~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i-~~~pDaV~~ 181 (325)
T 2h4a_A 110 AESAANKMWN-DGVRNPLVAMP------QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQEN-NSNTTALYA 181 (325)
T ss_dssp HHHHHHHHHH-TTCCSCEEEEE------SSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHS-TTCCCEEEE
T ss_pred HHHHHHHHHH-cCCCeEEEEEc------CCcHHHHHHHHHHHHHHHcCCCcceeEecCCHHHHHHHHHhc-CCCCCEEEE
Confidence 4666666654 34444443321 1111 2223334566788899888765542 4565555554 378999999
Q ss_pred EcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 240 IGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 240 IGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
.|. ...+..|.+.++..+.++++.+-
T Consensus 182 ~~~---~~~~~~i~~~~~~~g~~~pl~~~ 207 (325)
T 2h4a_A 182 VAS---PTELAEXKGYLTNIVPNLAIYAS 207 (325)
T ss_dssp CCC---HHHHHHHHHHHTTTCTTCEEEEC
T ss_pred eCC---HHHHhhhhhhHhhcCCCCCEEEe
Confidence 753 34567777777666778887764
No 159
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=21.07 E-value=4.6e+02 Score=25.84 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=32.4
Q ss_pred CccHHHHHHHHHHc----CCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeee
Q 011540 219 GHDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (483)
Q Consensus 219 ~~d~~~i~~~l~~~----~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgI 268 (483)
..++.++++.++++ +.|+++|.=|-+||.-...+....-+ .+.|||..
T Consensus 67 ~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 118 (327)
T 1o7j_A 67 GDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFV 118 (327)
T ss_dssp HHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEe
Confidence 45676776666654 79999999999999764444344322 45566654
No 160
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=20.96 E-value=3.3e+02 Score=24.73 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcC----CCchHHHHHHHHHHHHcCCceeEeeec
Q 011540 220 HDTNKIVDNIEDRGINQVYIIGG----DGTQKGAALIYKEVEKRGLQVAVAGIP 269 (483)
Q Consensus 220 ~d~~~i~~~l~~~~Id~LvvIGG----dgS~~~A~~L~~~~~~~g~~i~VvgIP 269 (483)
.++++.++.+++.|++++=+.+. +-+-.....+.+.++++|+.+..++.+
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~ 83 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPI 83 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecc
Confidence 36778888888888888776654 223444566777777778776655544
No 161
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.89 E-value=3.5e+02 Score=24.85 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc---CCcCChh--hHHHHHHHHH
Q 011540 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI---DKSFGFD--TAVEEAQRAI 296 (483)
Q Consensus 222 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt---D~S~Gfd--TA~~~~~~~i 296 (483)
..++++.|...++|++++.+.+.+-. +.+.+.+.+ +|||.+ |++++.. -.++++| .+...+++.+
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIVI----GKPTSDIDHQFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEEE----SCCCSSGGGGSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEEE----CCCCccccCCceEEecCcHHHHHHHHHHH
Confidence 35678889999999999998765432 233344445 557654 5555433 2345544 2333333333
Q ss_pred HHHHHhhhccCCceEEEEec
Q 011540 297 NAAHVEVESVENGVGIVKLM 316 (483)
Q Consensus 297 ~~i~~~A~S~~~rv~iVEvM 316 (483)
.. .++ ++|.++--.
T Consensus 127 ---~~--~G~-~~I~~i~~~ 140 (295)
T 3hcw_A 127 ---IE--QGV-DELIFITEK 140 (295)
T ss_dssp ---HH--HCC-SEEEEEEES
T ss_pred ---HH--cCC-ccEEEEcCC
Confidence 22 355 568877543
No 162
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.79 E-value=4.7e+02 Score=23.69 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=64.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCC-ccH
Q 011540 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (483)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~-~d~ 222 (483)
..+||++...-..|-...++.++-+.+.. ++ .++. +-.+... ...
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 53 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEK-NG-YRIL--------------------------------LCNTESDLARS 53 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35899998765667777788888777653 33 2222 0011111 123
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc-CCcCChhh--HHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDT--AVEEAQRAINAA 299 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt-D~S~GfdT--A~~~~~~~i~~i 299 (483)
.+.++.+...++|++++.+.+.+-. ..+.+. .+ +|||.+ |.+.+.. -.++++|- +...+++ .+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~-~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~---~L 119 (285)
T 3c3k_A 54 RSCLTLLSGKMVDGVITMDALSELP----ELQNII-GA--FPWVQC----AEYDPLSTVSSVSIDDVAASEYVVD---QL 119 (285)
T ss_dssp HHHTHHHHTTCCSEEEECCCGGGHH----HHHHHH-TT--SSEEEE----SSCCTTSSSCEEECCHHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHh-cC--CCEEEE----ccccCCCCCCEEEEChHHHHHHHHH---HH
Confidence 4567778889999999988754321 223333 34 567765 3333221 12455543 3333333 33
Q ss_pred HHhhhccCCceEEEEe
Q 011540 300 HVEVESVENGVGIVKL 315 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEv 315 (483)
.. .++ ++|.++--
T Consensus 120 ~~--~G~-~~I~~i~~ 132 (285)
T 3c3k_A 120 VK--SGK-KRIALINH 132 (285)
T ss_dssp HH--TTC-CCEEEEEC
T ss_pred HH--cCC-CeEEEEeC
Confidence 22 244 56877754
No 163
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=20.77 E-value=3.2e+02 Score=25.50 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCC-CchHHHHHHHHHHHHcCCceeEeeecccccCCc----cccCC------cCChh--h
Q 011540 221 DTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI----AVIDK------SFGFD--T 287 (483)
Q Consensus 221 d~~~i~~~l~~~~Id~LvvIGGd-gS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi----~gtD~------S~Gfd--T 287 (483)
+.++.++.+.+.|.|.+.+-+.. . .....+.+.++++|.++-|..-|.|-...+ +..|+ -+||+ .
T Consensus 68 dp~~~i~~~~~aGAd~itvh~Ea~~--~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~ 145 (231)
T 3ctl_A 68 RPQDYIAQLARAGADFITLHPETIN--GQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQP 145 (231)
T ss_dssp CGGGTHHHHHHHTCSEEEECGGGCT--TTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSCC
T ss_pred CHHHHHHHHHHcCCCEEEECcccCC--ccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCcc
Confidence 34455677788888888777544 3 234566677777787776766787643332 22331 23443 2
Q ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEecCCCcchHHHHHhhhcCCCcEEecC-CCCCCCCC-hhhHHHHHHHHHH
Q 011540 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIP-ESPFYLEG-PGGLFEFIERQLK 361 (483)
Q Consensus 288 A~~~~~~~i~~i~~~A~S~~~rv~iVEvMGR~~G~LA~~aaLA~~~ad~vlIP-E~~f~l~~-~~~lle~I~~rl~ 361 (483)
......+-|..++.-... ++.=+.||+=|+=.---+..+ +.. |||.+.+- -.-|.-+. +.+-++.+++.++
T Consensus 146 f~~~~l~kI~~lr~~~~~-~~~~~~I~VdGGI~~~~~~~~-~~a-GAd~~V~G~saif~~~d~~~~~~~~l~~~~~ 218 (231)
T 3ctl_A 146 FIPEMLDKLAELKAWRER-EGLEYEIEVDGSCNQATYEKL-MAA-GADVFIVGTSGLFNHAENIDEAWRIMTAQIL 218 (231)
T ss_dssp CCTTHHHHHHHHHHHHHH-HTCCCEEEEESCCSTTTHHHH-HHH-TCCEEEECTTTTGGGCSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhc-cCCCceEEEECCcCHHHHHHH-HHc-CCCEEEEccHHHhCCCCcHHHHHHHHHHHHH
Confidence 222223333333322211 111246888887332222222 334 79999988 66665444 5556666655444
No 164
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=20.69 E-value=45 Score=29.45 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCceEEEEecCC----CcchHH-HHHhhhcCCCcEEecC
Q 011540 307 ENGVGIVKLMGR----YSGFIS-MYATLASRDVDCCLIP 340 (483)
Q Consensus 307 ~~rv~iVEvMGR----~~G~LA-~~aaLA~~~ad~vlIP 340 (483)
.+.+.+|.+.|. ..|.+| +..+|+..+.++.+++
T Consensus 100 ~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 100 DDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp ESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred cCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 345888988886 468887 5666766566665554
No 165
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=20.20 E-value=1.7e+02 Score=28.94 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=54.4
Q ss_pred cChhHHhchhccCcccccccCC-CccHHHHHHHHHHcCCcEEEEE----cCCCchHHHHHHHHHHHHc--CCceeEeeec
Q 011540 197 LSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYII----GGDGTQKGAALIYKEVEKR--GLQVAVAGIP 269 (483)
Q Consensus 197 L~~~~v~~i~~~GGs~LGTsR~-~~d~~~i~~~l~~~~Id~LvvI----GGdgS~~~A~~L~~~~~~~--g~~i~VvgIP 269 (483)
++++++-.+... |...-||-- ..++.++.+.+.+.+ +.+++| |=-||+.+|...++.+.+. +.+|.||
T Consensus 79 i~~~efy~~m~~-~~~p~TSqPs~~~~~~~f~~l~~~g-~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi--- 153 (320)
T 3pl5_A 79 LTSRVLLEKIAA-GSKPTTSQVNVGQFESYFRQSAENG-QEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIV--- 153 (320)
T ss_dssp CCHHHHHHHHHT-TCCCEEECCCHHHHHHHHHHHHHTT-CCEEEEECCTTTCTHHHHHHHHHHHHHHHCTTCCEEEE---
T ss_pred cCHHHHHHHHhc-CCCCccCCCCHHHHHHHHHHHHHCC-CeEEEEecCchHhHHHHHHHHHHHHHHhhCCCCeEEEE---
Confidence 888888777766 445666653 346777777777777 556666 3478898888777766542 3344443
Q ss_pred ccccCCccccCCcCChhhHHHHHHHHH
Q 011540 270 KTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (483)
Q Consensus 270 kTIDNDi~gtD~S~GfdTA~~~~~~~i 296 (483)
|.- -.|.|..-.+..+++.+
T Consensus 154 ---DS~----~~s~g~g~lv~~Aa~l~ 173 (320)
T 3pl5_A 154 ---DTL----AATGGEGYLAMLAAQAR 173 (320)
T ss_dssp ---ECC----CCHHHHHHHHHHHHHHH
T ss_pred ---cCC----chHHHHHHHHHHHHHHH
Confidence 211 12555555555555554
No 166
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.16 E-value=4.8e+02 Score=23.48 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=71.2
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhCCCcEEEEEcccccccccCCeeccChhHHhchhccCcccccccCCCccH
Q 011540 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (483)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGs~LGTsR~~~d~ 222 (483)
+..+||++...-.-|-...++.++-+.+.+ ++ .++.-+. +.......
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~ 52 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILES-RG-YIGVLFD-------------------------------ANADIERE 52 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 445899999777777788888888877753 33 2332110 11111234
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCchHHHHHHHHHHHHcCCceeEeeecccccCCcccc-CCcCChh--hHHHHHHHHHHHH
Q 011540 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFD--TAVEEAQRAINAA 299 (483)
Q Consensus 223 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~~~~~~~g~~i~VvgIPkTIDNDi~gt-D~S~Gfd--TA~~~~~~~i~~i 299 (483)
.+.++.+...++|++++.+.+. ....+.+.+.+ +|||.+ |++++.. -.++++| .+...+++. +
T Consensus 53 ~~~~~~l~~~~vdgiIi~~~~~-----~~~~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~~---L 118 (276)
T 3jy6_A 53 KTLLRAIGSRGFDGLILQSFSN-----PQTVQEILHQQ--MPVVSV----DREMDACPWPQVVTDNFEAAKAATTA---F 118 (276)
T ss_dssp HHHHHHHHTTTCSEEEEESSCC-----HHHHHHHHTTS--SCEEEE----SCCCTTCSSCEEECCHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCCEEEEecCCc-----HHHHHHHHHCC--CCEEEE----ecccCCCCCCEEEEChHHHHHHHHHH---H
Confidence 5678888899999999999887 22334444444 667755 4444322 2244544 233333332 2
Q ss_pred HHhhhccCCceEEEEecC
Q 011540 300 HVEVESVENGVGIVKLMG 317 (483)
Q Consensus 300 ~~~A~S~~~rv~iVEvMG 317 (483)
.. .++ ++|.++--..
T Consensus 119 ~~--~G~-~~I~~i~~~~ 133 (276)
T 3jy6_A 119 RQ--QGY-QHVVVLTSEL 133 (276)
T ss_dssp HT--TTC-CEEEEEEECS
T ss_pred HH--cCC-CeEEEEecCC
Confidence 22 344 5677776544
Done!