BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011541
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 254 TVSDIGLTILAQGCKRLVKLELSGCEG-SFDGIKAIGQCCQMLEELTFSDHRMDD---GW 309
V+D L ++A+ K L LS CEG S DG+ AI C+ L+EL + +DD W
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175
Query: 310 LA 311
L+
Sbjct: 176 LS 177
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 118/327 (36%), Gaps = 101/327 (30%)
Query: 89 RNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGV 148
RN+ SLVCK W ++ R + + + + +I RFP + +V+L G
Sbjct: 27 RNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVEL--------KGKPH 78
Query: 149 FWSHRLVS--------LHIDSCFSRFC-DDEGMLLPVEIIDRGLKALACGCPNLRRLVVV 199
F LV I++ S + +E L + + D L+ +A N + LV+
Sbjct: 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138
Query: 200 ---GASEFGLLSVAEECLTLQEFELHKCGDNVLRG------------------------- 231
G S GL ++A C L+E +L + + + G
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198
Query: 232 --------IAACENLQILKLVGNV-------------------EGFYNSTV-SDI--GLT 261
+ C NL+ LKL V G Y + V D+ GL+
Sbjct: 199 SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258
Query: 262 ILAQGCK------------------------RLVKLELS-GCEGSFDGIKAIGQCCQMLE 296
+ GCK RL L LS S+D +K + QC + L+
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK-LQ 317
Query: 297 ELTFSDHRMDDGWLAALSYCENLKTLR 323
L D+ D G S C++L+ LR
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELR 344
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 20/106 (18%)
Query: 232 IAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLEL------SGCEG----- 280
I C NL++L+ + + D GL +LAQ CK+L +L + G E
Sbjct: 314 IQKCPNLEVLET--------RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365
Query: 281 SFDGIKAIGQCCQMLEELTFSDHRMDDGWLAAL-SYCENLKTLRFV 325
S G+ A+ Q CQ LE + + + L ++ +Y +NL R V
Sbjct: 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 20/170 (11%)
Query: 178 IIDRGLKALACGCPNLRRL-VVVGA------------SEFGLLSVAEECLTLQEFELH-- 222
I DRGL+ LA C L+RL + GA S+ GL+++A+ C L+ ++
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388
Query: 223 KCGDNVLRGIAA-CENLQILKLV-GNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG 280
+ L I +NL +LV + E D G+ L GCK+L + +G
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448
Query: 281 SFD--GIKAIGQCCQMLEELTFSD-HRMDDGWLAALSYCENLKTLRFVSC 327
G+ IGQ + + D+G + C NL+ L C
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 89 RNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDL 135
R++ SLVC+RW + + + RL RFPNL ++ L
Sbjct: 34 RDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKL 80
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 200 GASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAAC-----ENLQILKLVGNVEGFYNST 254
G SEF L ++ C L E L C D + + E + L L G Y
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-----YRKN 208
Query: 255 VSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDH 303
+ L+ L + C LV L+LS D + C Q +L + H
Sbjct: 209 LQKSDLSTLVRRCPNLVHLDLS------DSVMLKNDCFQEFFQLNYLQH 251
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 192 NLRRLVVVGASEFGLLSVAEECLTLQEFELH--KCGDNVLRGIAACENLQILKLVGNVEG 249
+L V+ ++ G+LS +C LQ L + D ++ +A NL L L G G
Sbjct: 99 DLSNSVIEVSTLHGILS---QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG-CSG 154
Query: 250 FYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIK-----AIGQCCQMLEELTFSDHR 304
F S+ L L C RL +L LS C FD + A+ + + +L S +R
Sbjct: 155 F-----SEFALQTLLSSCSRLDELNLSWC---FDFTEKHVQVAVAHVSETITQLNLSGYR 206
Query: 305 MD 306
+
Sbjct: 207 KN 208
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 200 GASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAAC-----ENLQILKLVGNVEGFYNST 254
G SEF L ++ C L E L C D + + E + L L G Y
Sbjct: 116 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-----YRKN 170
Query: 255 VSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDH 303
+ L+ L + C LV L+LS D + C Q +L + H
Sbjct: 171 LQKSDLSTLVRRCPNLVHLDLS------DSVMLKNDCFQEFFQLNYLQH 213
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 192 NLRRLVVVGASEFGLLSVAEECLTLQEFELH--KCGDNVLRGIAACENLQILKLVGNVEG 249
+L V+ ++ G+LS +C LQ L + D ++ +A NL L L G G
Sbjct: 61 DLSNSVIEVSTLHGILS---QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG-CSG 116
Query: 250 FYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIK-----AIGQCCQMLEELTFSDHR 304
F S+ L L C RL +L LS C FD + A+ + + +L S +R
Sbjct: 117 F-----SEFALQTLLSSCSRLDELNLSWC---FDFTEKHVQVAVAHVSETITQLNLSGYR 168
Query: 305 MD 306
+
Sbjct: 169 KN 170
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 22/94 (23%)
Query: 262 ILAQGCKRLVKLELSGCEGSFD---------------------GIKAIGQCCQMLEELTF 300
+L+ GC L L +SG + S D GI +G C L+ L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC-SALQHLDI 230
Query: 301 SDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSP 334
S +++ + A+S C LK L S + + P P
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 22/94 (23%)
Query: 262 ILAQGCKRLVKLELSGCEGSFD---------------------GIKAIGQCCQMLEELTF 300
+L+ GC L L +SG + S D GI +G C L+ L
Sbjct: 169 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC-SALQHLDI 227
Query: 301 SDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSP 334
S +++ + A+S C LK L S + + P P
Sbjct: 228 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|4ACS|A Chain A, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
pdb|4ACS|B Chain B, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
pdb|4ACS|C Chain C, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
pdb|4ACS|D Chain D, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
Length = 222
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 285 IKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCL 344
I+ I +M+ +L+FS D LA + E K F + +K+ S G D +G+ L
Sbjct: 96 IEGIADLGEMIGDLSFSQPEEQDAKLALIQ--EKTKNRYFPAFEKVLKSHGQDYLVGNKL 153
Query: 345 ALERLHL 351
+ +HL
Sbjct: 154 SRADIHL 160
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 404 GCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLL 463
C+L T E L SV + +L C + ++SP +T+ S L + R DT++ L
Sbjct: 757 NCNLNTMEALASVNTALQFFSALNYSEC--FSESQISPLHATVISSLSAIFIRDDTENDL 814
Query: 464 ASSL 467
+ L
Sbjct: 815 VTEL 818
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 404 GCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLL 463
C+L T E L SV + +L C + ++SP +T+ S L + R DT++ L
Sbjct: 757 NCNLNTMEALASVNTALQFFSALNYSEC--FSESQISPLHATVISSLSAIFIRDDTENDL 814
Query: 464 ASSL 467
+ L
Sbjct: 815 VTEL 818
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 404 GCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLL 463
C+L T E L SV + +L C + ++SP +T+ S L + R DT++ L
Sbjct: 755 NCNLNTMEALASVNTALQFFSALNYSEC--FSESQISPLHATVISSLSAIFIRDDTENDL 812
Query: 464 ASSL 467
+ L
Sbjct: 813 VTEL 816
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,024,651
Number of Sequences: 62578
Number of extensions: 498429
Number of successful extensions: 948
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 27
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)