Query 011541
Match_columns 483
No_of_seqs 235 out of 2788
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 3.4E-30 7.4E-35 238.2 10.3 366 71-456 74-460 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 8.5E-26 1.8E-30 200.4 9.9 286 69-453 98-392 (419)
3 KOG4341 F-box protein containi 99.9 2.8E-22 6.1E-27 186.0 5.3 273 176-457 149-435 (483)
4 cd00116 LRR_RI Leucine-rich re 99.6 3.7E-14 8E-19 137.3 21.7 271 173-457 5-316 (319)
5 cd00116 LRR_RI Leucine-rich re 99.6 9.8E-14 2.1E-18 134.3 18.0 241 204-457 13-287 (319)
6 KOG2120 SCF ubiquitin ligase, 99.5 4.4E-15 9.5E-20 132.7 5.4 186 268-457 185-372 (419)
7 PLN00113 leucine-rich repeat r 99.5 8.3E-14 1.8E-18 154.8 14.4 202 189-405 162-366 (968)
8 PLN00113 leucine-rich repeat r 99.5 1.5E-13 3.2E-18 152.8 14.3 249 189-457 138-389 (968)
9 KOG1947 Leucine rich repeat pr 99.5 9.5E-14 2.1E-18 142.4 10.3 245 176-440 173-446 (482)
10 KOG1947 Leucine rich repeat pr 99.4 5.8E-13 1.3E-17 136.5 11.0 373 64-457 40-436 (482)
11 KOG1909 Ran GTPase-activating 99.3 4.3E-11 9.4E-16 109.8 16.0 257 183-448 22-325 (382)
12 KOG1909 Ran GTPase-activating 99.3 1.4E-11 3.1E-16 112.9 10.6 243 173-423 37-327 (382)
13 KOG4194 Membrane glycoprotein 99.2 4.4E-13 9.6E-18 130.1 -3.4 206 210-432 217-427 (873)
14 PLN03210 Resistant to P. syrin 99.2 6.7E-11 1.4E-15 132.5 10.7 224 189-436 655-908 (1153)
15 PLN03210 Resistant to P. syrin 99.1 2.8E-10 6E-15 127.6 9.7 239 189-457 632-902 (1153)
16 KOG4194 Membrane glycoprotein 99.1 9.9E-12 2.1E-16 120.9 -1.7 256 189-457 100-374 (873)
17 KOG3207 Beta-tubulin folding c 99.1 1.9E-11 4.1E-16 115.2 -0.8 208 234-456 119-334 (505)
18 PF12937 F-box-like: F-box-lik 98.9 3.8E-10 8.3E-15 74.9 2.2 44 69-112 1-46 (47)
19 KOG3207 Beta-tubulin folding c 98.9 6.7E-10 1.4E-14 104.9 3.6 207 190-405 120-336 (505)
20 KOG0444 Cytoskeletal regulator 98.9 5.4E-11 1.2E-15 116.7 -5.4 246 190-459 125-373 (1255)
21 KOG3665 ZYG-1-like serine/thre 98.6 8.8E-08 1.9E-12 100.2 8.7 158 268-432 122-286 (699)
22 KOG0618 Serine/threonine phosp 98.6 1.4E-08 3.1E-13 104.4 1.5 151 292-456 358-508 (1081)
23 COG5238 RNA1 Ran GTPase-activa 98.5 4.3E-06 9.3E-11 74.9 15.1 163 290-456 89-280 (388)
24 KOG0444 Cytoskeletal regulator 98.5 4.9E-09 1.1E-13 103.3 -3.8 245 189-457 53-300 (1255)
25 KOG3665 ZYG-1-like serine/thre 98.4 8.1E-07 1.8E-11 93.1 8.0 155 236-401 122-281 (699)
26 PF14580 LRR_9: Leucine-rich r 98.3 2.9E-07 6.2E-12 79.4 2.3 82 191-280 19-100 (175)
27 PF14580 LRR_9: Leucine-rich r 98.3 2.3E-07 5E-12 79.9 1.4 125 294-428 20-147 (175)
28 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-05 2.3E-10 72.4 11.3 195 231-432 87-314 (388)
29 KOG1259 Nischarin, modulator o 98.2 3E-07 6.5E-12 83.2 -0.3 211 183-405 174-409 (490)
30 smart00256 FBOX A Receptor for 98.2 1.1E-06 2.4E-11 56.3 2.4 32 72-103 1-32 (41)
31 KOG2982 Uncharacterized conser 98.1 5E-06 1.1E-10 75.4 6.7 187 234-432 69-260 (418)
32 PF00646 F-box: F-box domain; 98.1 5.2E-07 1.1E-11 60.1 0.3 35 69-103 3-37 (48)
33 KOG2982 Uncharacterized conser 98.1 3.8E-07 8.2E-12 82.5 -1.6 210 181-401 61-285 (418)
34 PRK15387 E3 ubiquitin-protein 97.9 1E-05 2.2E-10 85.5 4.3 53 395-457 402-454 (788)
35 KOG3864 Uncharacterized conser 97.9 8E-06 1.7E-10 70.1 2.5 104 345-451 102-207 (221)
36 KOG1259 Nischarin, modulator o 97.8 7.4E-06 1.6E-10 74.4 2.2 207 203-432 171-410 (490)
37 PRK15387 E3 ubiquitin-protein 97.8 3.7E-05 8E-10 81.3 7.5 52 191-247 262-313 (788)
38 KOG0618 Serine/threonine phosp 97.8 6.1E-06 1.3E-10 85.6 0.3 207 191-407 241-488 (1081)
39 KOG4658 Apoptotic ATPase [Sign 97.7 8.7E-06 1.9E-10 87.7 1.0 126 189-324 543-675 (889)
40 KOG4237 Extracellular matrix p 97.7 6E-06 1.3E-10 77.8 -0.7 110 211-328 88-199 (498)
41 KOG3864 Uncharacterized conser 97.7 4.2E-05 9.1E-10 65.8 3.8 88 338-425 119-208 (221)
42 PRK15370 E3 ubiquitin-protein 97.6 8.5E-05 1.8E-09 79.0 6.6 11 395-405 367-377 (754)
43 KOG4237 Extracellular matrix p 97.5 4E-05 8.7E-10 72.3 2.2 229 188-432 88-357 (498)
44 PRK15370 E3 ubiquitin-protein 97.5 0.00017 3.7E-09 76.7 6.4 207 191-436 220-429 (754)
45 KOG1859 Leucine-rich repeat pr 97.3 6.6E-05 1.4E-09 76.2 1.1 106 290-405 184-289 (1096)
46 KOG4658 Apoptotic ATPase [Sign 97.3 0.0002 4.4E-09 77.4 4.9 129 211-352 542-676 (889)
47 KOG0617 Ras suppressor protein 97.2 2.9E-06 6.2E-11 70.8 -8.3 150 192-355 34-184 (264)
48 KOG0472 Leucine-rich repeat pr 97.0 0.00026 5.6E-09 67.2 1.0 59 188-247 249-308 (565)
49 KOG0281 Beta-TrCP (transducin 96.7 0.00075 1.6E-08 62.3 1.4 50 64-113 70-125 (499)
50 PF13855 LRR_8: Leucine rich r 96.6 0.00043 9.4E-09 48.5 -0.1 58 294-354 2-59 (61)
51 smart00367 LRR_CC Leucine-rich 96.6 0.0028 6.1E-08 35.7 3.0 24 394-417 1-24 (26)
52 KOG2739 Leucine-rich acidic nu 96.6 0.00053 1.2E-08 61.6 -0.1 110 315-430 41-152 (260)
53 KOG2123 Uncharacterized conser 96.5 0.00066 1.4E-08 61.4 -0.0 112 294-416 20-135 (388)
54 PF13855 LRR_8: Leucine rich r 96.3 0.0014 3.1E-08 45.8 0.7 57 214-278 1-59 (61)
55 KOG2739 Leucine-rich acidic nu 96.3 0.0017 3.6E-08 58.5 1.2 109 293-405 43-153 (260)
56 KOG2997 F-box protein FBX9 [Ge 96.2 0.0019 4.1E-08 59.3 1.4 49 67-115 105-160 (366)
57 PLN03150 hypothetical protein; 95.9 0.015 3.3E-07 61.3 6.7 36 369-405 465-500 (623)
58 KOG1859 Leucine-rich repeat pr 95.9 0.00078 1.7E-08 68.7 -2.9 111 205-328 178-290 (1096)
59 smart00367 LRR_CC Leucine-rich 95.9 0.0093 2E-07 33.5 2.7 24 343-366 1-24 (26)
60 PLN03215 ascorbic acid mannose 95.9 0.005 1.1E-07 59.4 2.4 38 68-105 3-41 (373)
61 PLN03150 hypothetical protein; 95.7 0.026 5.7E-07 59.6 7.1 106 295-406 420-526 (623)
62 KOG4308 LRR-containing protein 95.7 0.0033 7.1E-08 63.5 0.3 189 234-431 113-328 (478)
63 KOG0472 Leucine-rich repeat pr 95.6 0.0065 1.4E-07 58.0 1.8 113 229-356 428-540 (565)
64 KOG2123 Uncharacterized conser 95.4 0.0065 1.4E-07 55.2 1.4 104 267-377 18-124 (388)
65 PF12799 LRR_4: Leucine Rich r 95.4 0.027 5.9E-07 36.3 3.9 34 214-247 1-35 (44)
66 KOG4308 LRR-containing protein 95.4 0.0045 9.7E-08 62.6 0.1 197 238-445 89-313 (478)
67 KOG0617 Ras suppressor protein 95.3 0.00026 5.7E-09 59.3 -7.4 130 189-328 54-184 (264)
68 PRK15386 type III secretion pr 95.1 0.043 9.3E-07 53.8 6.1 135 189-354 50-187 (426)
69 KOG1644 U2-associated snRNP A' 95.1 0.014 3E-07 50.7 2.3 106 294-405 43-150 (233)
70 KOG1644 U2-associated snRNP A' 95.1 0.012 2.6E-07 51.0 1.9 43 312-355 108-151 (233)
71 PRK15386 type III secretion pr 94.7 0.085 1.9E-06 51.7 6.9 137 266-431 50-187 (426)
72 COG4886 Leucine-rich repeat (L 94.4 0.033 7.1E-07 55.5 3.3 169 191-380 116-287 (394)
73 COG4886 Leucine-rich repeat (L 93.8 0.043 9.4E-07 54.6 3.0 148 191-355 140-288 (394)
74 PF12799 LRR_4: Leucine Rich r 93.6 0.076 1.6E-06 34.2 2.7 37 191-227 1-37 (44)
75 PF13516 LRR_6: Leucine Rich r 93.2 0.081 1.8E-06 28.9 2.1 23 394-417 1-23 (24)
76 PF13013 F-box-like_2: F-box-l 92.7 0.15 3.2E-06 40.0 3.7 30 68-97 21-50 (109)
77 KOG0531 Protein phosphatase 1, 92.6 0.0061 1.3E-07 61.2 -5.4 104 190-304 94-197 (414)
78 PF13516 LRR_6: Leucine Rich r 91.2 0.25 5.5E-06 26.9 2.5 23 343-366 1-23 (24)
79 KOG0531 Protein phosphatase 1, 86.7 0.24 5.2E-06 49.7 0.6 83 189-280 116-198 (414)
80 KOG0274 Cdc4 and related F-box 86.3 0.24 5.2E-06 51.0 0.3 39 64-102 103-141 (537)
81 KOG4579 Leucine-rich repeat (L 86.3 0.15 3.3E-06 41.6 -0.9 81 270-355 29-111 (177)
82 smart00368 LRR_RI Leucine rich 86.1 1.1 2.3E-05 25.6 2.8 24 395-419 2-25 (28)
83 KOG3763 mRNA export factor TAP 83.3 2.2 4.8E-05 43.1 5.4 39 315-354 216-254 (585)
84 PF13306 LRR_5: Leucine rich r 78.0 1 2.2E-05 36.5 1.0 34 212-245 10-44 (129)
85 PF13306 LRR_5: Leucine rich r 71.4 1 2.3E-05 36.4 -0.6 57 189-245 10-67 (129)
86 KOG3763 mRNA export factor TAP 71.3 6.1 0.00013 40.0 4.6 83 234-324 216-308 (585)
87 PF13504 LRR_7: Leucine rich r 71.3 3.6 7.7E-05 20.3 1.6 10 396-405 2-11 (17)
88 KOG4579 Leucine-rich repeat (L 71.1 2.5 5.4E-05 34.8 1.5 106 317-430 27-132 (177)
89 KOG0532 Leucine-rich repeat (L 70.2 0.23 4.9E-06 50.1 -5.4 18 229-246 114-131 (722)
90 KOG3926 F-box proteins [Amino 67.9 4 8.8E-05 37.2 2.3 48 68-115 201-251 (332)
91 PF07723 LRR_2: Leucine Rich R 65.2 5.6 0.00012 22.2 1.8 25 397-421 2-26 (26)
92 PF09372 PRANC: PRANC domain; 62.0 4.3 9.4E-05 31.2 1.3 26 66-91 69-94 (97)
93 KOG0532 Leucine-rich repeat (L 61.6 0.3 6.6E-06 49.2 -6.4 150 268-431 121-270 (722)
94 KOG3735 Tropomodulin and leiom 47.5 21 0.00046 33.9 3.5 101 342-443 196-305 (353)
95 KOG4242 Predicted myosin-I-bin 46.1 63 0.0014 32.5 6.5 20 461-480 441-460 (553)
96 PF00560 LRR_1: Leucine Rich R 44.9 12 0.00025 19.7 0.8 9 423-431 2-10 (22)
97 PF06881 Elongin_A: RNA polyme 33.0 19 0.00041 28.4 0.7 49 67-115 2-50 (109)
98 PF03382 DUF285: Mycoplasma pr 27.5 37 0.0008 27.2 1.5 10 414-423 79-88 (120)
99 smart00370 LRR Leucine-rich re 25.1 62 0.0014 17.5 1.7 10 396-405 3-12 (26)
100 smart00369 LRR_TYP Leucine-ric 25.1 62 0.0014 17.5 1.7 10 396-405 3-12 (26)
101 KOG2502 Tub family proteins [G 21.2 67 0.0015 30.8 2.1 37 67-103 43-87 (355)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=3.4e-30 Score=238.25 Aligned_cols=366 Identities=25% Similarity=0.384 Sum_probs=286.5
Q ss_pred CCcHHHHHHHhccCCcccchhhhhhhHHHH--HHHhhhhcccccccccccccch----hhhcC-CCceEEEeeccccccc
Q 011541 71 LLSDDILLRILSKLPVSQRNANSLVCKRWL--NLQGRLVRSLKVLDWEFLESGR----LISRF-PNLSNVDLVVGCFVRR 143 (483)
Q Consensus 71 ~LP~ell~~I~~~L~~~~~~~~~lVck~W~--~~~~~l~~~l~~~~~~~~~~~~----l~~~~-~~L~~l~l~~~~~~~~ 143 (483)
.||.|++.+||++|+.+.+++++++|+.|. ++++..|.+++.+++....... ..+++ -.++.+.+++.....+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 699999999999999999999999999996 4488999999998877654433 33444 4667888876554444
Q ss_pred CCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCC---ChHHHHHHHHhCCCCCEEE
Q 011541 144 MGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGA---SEFGLLSVAEECLTLQEFE 220 (483)
Q Consensus 144 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~ 220 (483)
............-.++. ..+| ..+++..+..+++.|++|+.|.+..| ++..+..+++.|++|++|+
T Consensus 154 sslrt~~~~CpnIehL~---l~gc--------~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN 222 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLA---LYGC--------KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN 222 (483)
T ss_pred chhhHHhhhCCchhhhh---hhcc--------eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence 44333322221111111 1123 47888889999999999999998875 4567777888999999999
Q ss_pred eecCCccch----HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChH-HHHHHHHcCcCC
Q 011541 221 LHKCGDNVL----RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFD-GIKAIGQCCQML 295 (483)
Q Consensus 221 l~~~~~~~~----~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~~~L 295 (483)
++.|+...- .....+.+++.+.+.||. ...++.+..+...++-+.++++..|...+| .+..+...|..|
T Consensus 223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~------e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 223 LSWCPQISGNGVQALQRGCKELEKLSLKGCL------ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hccCchhhcCcchHHhccchhhhhhhhcccc------cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 998864433 233467778888888887 478888888888888888899888887777 788888889999
Q ss_pred Ceeeecccc-CcHHHH-HHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcccc
Q 011541 296 EELTFSDHR-MDDGWL-AALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVR 373 (483)
Q Consensus 296 ~~L~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 373 (483)
+.|..+++. .++... .....+++|+.|.+.+|...++. ++..+..+|+.|+.+++..|..+.+..+..++.+|+.|+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 999998875 344444 44568899999999999988864 667778889999999999998888888999999999999
Q ss_pred EEEccCCCCCCHHHHHHHh----cCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhccc
Q 011541 374 ELVFQDCWGLDDDIFRFAD----VFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSV 449 (483)
Q Consensus 374 ~L~L~~~~~~~d~~~~~~~----~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~ 449 (483)
.|.++.|..++|++...+. ....|+.+.+.+|+.+++..++.+. .|++|+.+++.+|..++.+++. .+...+|+
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~-~~~~~lp~ 453 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAIS-RFATHLPN 453 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhH-HHHhhCcc
Confidence 9999999989888665443 3568999999999888988888865 7899999999999999998888 45567788
Q ss_pred CcEEEee
Q 011541 450 LKELKWR 456 (483)
Q Consensus 450 L~~L~~~ 456 (483)
++..++-
T Consensus 454 i~v~a~~ 460 (483)
T KOG4341|consen 454 IKVHAYF 460 (483)
T ss_pred ceehhhc
Confidence 8887775
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.5e-26 Score=200.37 Aligned_cols=286 Identities=25% Similarity=0.287 Sum_probs=157.9
Q ss_pred CCCCcHHHHHHHhccCCcccchhhhhhhHHHHHH--Hhhhhccccccccccc--ccchhhhcCCCceEEEeecccccccC
Q 011541 69 TLLLSDDILLRILSKLPVSQRNANSLVCKRWLNL--QGRLVRSLKVLDWEFL--ESGRLISRFPNLSNVDLVVGCFVRRM 144 (483)
Q Consensus 69 ~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~--~~~l~~~l~~~~~~~~--~~~~l~~~~~~L~~l~l~~~~~~~~~ 144 (483)
|..|||||++.||+.|+.+++.+++.|||||+++ ..++|..++..+.... ..+++.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~------------------- 158 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLS------------------- 158 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHh-------------------
Confidence 7889999999999999999999999999999988 4578998887754432 1122222
Q ss_pred CccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcC-CCccEEEEcCC--ChHHHHHHHHhCCCCCEEEe
Q 011541 145 GAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGC-PNLRRLVVVGA--SEFGLLSVAEECLTLQEFEL 221 (483)
Q Consensus 145 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~l 221 (483)
+.+..+.+. .....+..+...+..+ ..|+.|++++. +...+..+.+.|.+|+.|.+
T Consensus 159 -------rgV~v~Rla--------------r~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl 217 (419)
T KOG2120|consen 159 -------RGVIVFRLA--------------RSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL 217 (419)
T ss_pred -------CCeEEEEcc--------------hhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence 111111111 0011111121111122 35677777643 55566667777777777777
Q ss_pred ecC--CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeee
Q 011541 222 HKC--GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELT 299 (483)
Q Consensus 222 ~~~--~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 299 (483)
++. ++.....|+.-.+|+.|+|++|.+ ++..++..+...|..|..|+|+.|....+.+..+...
T Consensus 218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG------~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h-------- 283 (419)
T KOG2120|consen 218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSG------FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH-------- 283 (419)
T ss_pred cccccCcHHHHHHhccccceeeccccccc------cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh--------
Confidence 765 344445566666666666666652 6666666666666666666666665443322211110
Q ss_pred eccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccC
Q 011541 300 FSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQD 379 (483)
Q Consensus 300 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 379 (483)
-.++|+.|+++||.. ++.+..+..+.+.||+|.+|+|++
T Consensus 284 ---------------ise~l~~LNlsG~rr--------------------------nl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 284 ---------------ISETLTQLNLSGYRR--------------------------NLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ---------------hchhhhhhhhhhhHh--------------------------hhhhhHHHHHHHhCCceeeecccc
Confidence 113344444444321 222234444455555555555555
Q ss_pred CCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEE
Q 011541 380 CWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKEL 453 (483)
Q Consensus 380 ~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L 453 (483)
|..+.++.+.++..++.|++|.++.|..+..+.+..+- ..|.|.+|++.||- .|. -.+.+.+.+|+|+.-
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~v--sdt-~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGCV--SDT-TMELLKEMLSHLKIN 392 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeec-cCcceEEEEecccc--Cch-HHHHHHHhCcccccc
Confidence 55555555555555666666666656555554444432 34566666665552 221 222344445554433
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.85 E-value=2.8e-22 Score=186.01 Aligned_cols=273 Identities=27% Similarity=0.466 Sum_probs=227.9
Q ss_pred cccchHHHHHHHhcCCCccEEEEcCC---ChHHHHHHHHhCCCCCEEEeecCCcc---chHHhh-cCCCCCEEEeecCCC
Q 011541 176 VEIIDRGLKALACGCPNLRRLVVVGA---SEFGLLSVAEECLTLQEFELHKCGDN---VLRGIA-ACENLQILKLVGNVE 248 (483)
Q Consensus 176 ~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~l~~~~~~---~~~~i~-~~~~L~~L~L~~~~~ 248 (483)
..+.++.+..+...||+++.|.+.++ ++..+..+.+.|+.|+.|++..|... .+..++ .|++|++|++++|.
T Consensus 149 r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~- 227 (483)
T KOG4341|consen 149 RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP- 227 (483)
T ss_pred ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc-
Confidence 46778888888999999999998876 67788899999999999999998544 344443 69999999999998
Q ss_pred CccccccChHHHHHHHhcCCCCcEEEeeCCCCChH-HHHHHHHcCcCCCeeeecccc--CcHHHHHHhhcCCCCcEEEec
Q 011541 249 GFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFD-GIKAIGQCCQMLEELTFSDHR--MDDGWLAALSYCENLKTLRFV 325 (483)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~ 325 (483)
.+.+.+++.+..+|..++.+.+.+|....+ .+..+...++-+.++++..|. ++.....+-..+..|+.|...
T Consensus 228 -----qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 228 -----QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred -----hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence 588889999999999999998889887665 778888888888888866654 455555566688899999999
Q ss_pred cCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHH-HHHHHhcCCCCcEEEecC
Q 011541 326 SCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDD-IFRFADVFRRAKFLSLEG 404 (483)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~-~~~~~~~~~~L~~L~l~~ 404 (483)
+|..+++. .+..+..++++|+.|.+.+|..+++.++..+..+|+.|+.+++..|..++|. ..+...+|+.|+.|.++.
T Consensus 303 ~~t~~~d~-~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 303 SCTDITDE-VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred CCCCCchH-HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence 99988763 5677788899999999999999999999999999999999999999888887 445678999999999999
Q ss_pred CCCCCHHHHHHHHh---cCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 405 CSLVTTEGLESVIL---SWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 405 ~~~lt~~~l~~l~~---~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|..+||+|+..+.. ....|+.+.+++|+.+++..+. .+ ..|++|+.+.+.+
T Consensus 382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l-~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HL-SICRNLERIELID 435 (483)
T ss_pred hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HH-hhCcccceeeeec
Confidence 99999998887654 3569999999999988776554 33 5689999988876
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=3.7e-14 Score=137.26 Aligned_cols=271 Identities=21% Similarity=0.161 Sum_probs=179.3
Q ss_pred CCCcccchHHHHHHHhcCCCccEEEEcCCC--hH---HHHHHHHhCCCCCEEEeecCCcc--------chHHhhcCCCCC
Q 011541 173 LLPVEIIDRGLKALACGCPNLRRLVVVGAS--EF---GLLSVAEECLTLQEFELHKCGDN--------VLRGIAACENLQ 239 (483)
Q Consensus 173 l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~---~l~~~~~~~~~L~~L~l~~~~~~--------~~~~i~~~~~L~ 239 (483)
+....+++..+..+.....+|++|.+.++. .. .+.......++|++|++..+... ....+..+++|+
T Consensus 5 L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 84 (319)
T cd00116 5 LKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84 (319)
T ss_pred cccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee
Confidence 344566666666666677789999999764 33 34455567788999999876322 123456788999
Q ss_pred EEEeecCCCCccccccCh---HHHHHHHhcCCCCcEEEeeCCCCChHHHHHH---HHcC-cCCCeeeeccccCc----HH
Q 011541 240 ILKLVGNVEGFYNSTVSD---IGLTILAQGCKRLVKLELSGCEGSFDGIKAI---GQCC-QMLEELTFSDHRMD----DG 308 (483)
Q Consensus 240 ~L~L~~~~~~~~~~~~~~---~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l---~~~~-~~L~~L~l~~~~~~----~~ 308 (483)
.|+++++. +.+ ..+..+... ++|++|++++|.....++..+ ...+ ++|++|++.++.+. ..
T Consensus 85 ~L~l~~~~-------~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 85 ELDLSDNA-------LGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred EEEccCCC-------CChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 99999886 432 233334444 679999999998765444333 2344 88999999998765 23
Q ss_pred HHHHhhcCCCCcEEEeccCCCCCCCCChHH---HhcCCCCccEEeccccccccHHHHH---HHHhcCccccEEEccCCCC
Q 011541 309 WLAALSYCENLKTLRFVSCKKIDPSPGPDE---YLGSCLALERLHLQKCQLRDKKGVR---ALFRVCEAVRELVFQDCWG 382 (483)
Q Consensus 309 ~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~~~~~~l~---~l~~~~~~L~~L~L~~~~~ 382 (483)
+...+..+++|++|++.++. +++ .++.. .+...++|++|++++|. +++.+.. .....+++|++|++++| .
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~ 232 (319)
T cd00116 157 LAKALRANRDLKELNLANNG-IGD-AGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-N 232 (319)
T ss_pred HHHHHHhCCCcCEEECcCCC-Cch-HHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-c
Confidence 34456677899999998876 432 23222 34456799999999885 4444433 34456789999999998 4
Q ss_pred CCHH-HHHHHhc----CCCCcEEEecCCCCCCHHHHHHHH---hcCcccceeeeecCCCCCccchHHH--Hhhhc-ccCc
Q 011541 383 LDDD-IFRFADV----FRRAKFLSLEGCSLVTTEGLESVI---LSWTDLQSLRVVSCKNIKDGEVSPA--LSTLF-SVLK 451 (483)
Q Consensus 383 ~~d~-~~~~~~~----~~~L~~L~l~~~~~lt~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~v~~~--l~~~~-~~L~ 451 (483)
+++. ...+... .+.|+.|++.+| .+++.+...+. ..+++|+.++++++. +++++.... ....+ +.|+
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchh
Confidence 5553 3333333 379999999998 88766665544 345689999999965 766643311 22223 5777
Q ss_pred EEEeec
Q 011541 452 ELKWRP 457 (483)
Q Consensus 452 ~L~~~~ 457 (483)
++.+..
T Consensus 311 ~~~~~~ 316 (319)
T cd00116 311 SLWVKD 316 (319)
T ss_pred hcccCC
Confidence 776654
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=9.8e-14 Score=134.28 Aligned_cols=241 Identities=20% Similarity=0.163 Sum_probs=165.6
Q ss_pred HHHHHHHHhCCCCCEEEeecCCc--c----chHHhhcCCCCCEEEeecCCCCccccccC--hHHHH---HHHhcCCCCcE
Q 011541 204 FGLLSVAEECLTLQEFELHKCGD--N----VLRGIAACENLQILKLVGNVEGFYNSTVS--DIGLT---ILAQGCKRLVK 272 (483)
Q Consensus 204 ~~l~~~~~~~~~L~~L~l~~~~~--~----~~~~i~~~~~L~~L~L~~~~~~~~~~~~~--~~~l~---~l~~~~~~L~~ 272 (483)
......+....+|++|++.++.- . ....+...++|++|++.++. +. ...+. .....+++|++
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-------~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-------TGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred cchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-------cCCcchHHHHHHHHHHhcCceeE
Confidence 34455666677799999999852 1 12345578889999999875 33 23332 22334789999
Q ss_pred EEeeCCCCChH---HHHHHHHcCcCCCeeeeccccCcHHH----HHHhhcC-CCCcEEEeccCCCCCCC-CChHHHhcCC
Q 011541 273 LELSGCEGSFD---GIKAIGQCCQMLEELTFSDHRMDDGW----LAALSYC-ENLKTLRFVSCKKIDPS-PGPDEYLGSC 343 (483)
Q Consensus 273 L~L~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~~-~~l~~~~~~~ 343 (483)
|+++++..... .+..+... ++|++|+++++.+.+.. ...+..+ ++|+.|++.+|...... ..+...+..+
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred EEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 99999887533 34444444 67999999998866332 2345566 89999999998743211 1133445677
Q ss_pred CCccEEeccccccccHHHHHHHHh---cCccccEEEccCCCCCCHHH----HHHHhcCCCCcEEEecCCCCCCHHHHHHH
Q 011541 344 LALERLHLQKCQLRDKKGVRALFR---VCEAVRELVFQDCWGLDDDI----FRFADVFRRAKFLSLEGCSLVTTEGLESV 416 (483)
Q Consensus 344 ~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~~~~~d~~----~~~~~~~~~L~~L~l~~~~~lt~~~l~~l 416 (483)
++|++|++++|. +++.++..+.. .+++|++|++++| .+++.. ...+..+++|+.|++++| .+++.++..+
T Consensus 165 ~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l 241 (319)
T cd00116 165 RDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAAL 241 (319)
T ss_pred CCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHH
Confidence 899999999975 55456555543 3569999999998 444432 234567899999999998 8998888877
Q ss_pred HhcC----cccceeeeecCCCCCccchHHHHhhh---cccCcEEEeec
Q 011541 417 ILSW----TDLQSLRVVSCKNIKDGEVSPALSTL---FSVLKELKWRP 457 (483)
Q Consensus 417 ~~~~----~~L~~L~l~~c~~i~~~~v~~~l~~~---~~~L~~L~~~~ 457 (483)
...+ +.|++|++.+|. +++.+.. .+... +++|+++.+..
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~-i~~~~~~-~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 242 ASALLSPNISLLTLSLSCND-ITDDGAK-DLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHhccCCCceEEEccCCC-CCcHHHH-HHHHHHhcCCCccEEECCC
Confidence 7664 799999999986 7655543 22222 35667766653
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.4e-15 Score=132.68 Aligned_cols=186 Identities=21% Similarity=0.297 Sum_probs=149.9
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
.+||+|+|+........+..+...|..|+.|.+.+...++.....++.-.+|+.|+++.|.-++.. ++..++..|..|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHh
Confidence 369999998887766678888888999999999999999998888998899999999999888754 5677889999999
Q ss_pred EEeccccccccHHHHHHHHhcCccccEEEccCCCC-CCHH-HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccce
Q 011541 348 RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWG-LDDD-IFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQS 425 (483)
Q Consensus 348 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~d~-~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~ 425 (483)
.|+|+.|....+.--..+...-++|+.|+|++|.. +.+. +....+.||+|..|++++|..+++..... +.+++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchhee
Confidence 99999998777663344555567999999999743 3333 44467899999999999998889855554 457999999
Q ss_pred eeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 426 LRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 426 L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|.++.|..|....+.+ + .-.|.|.+|.+.+
T Consensus 343 lSlsRCY~i~p~~~~~-l-~s~psl~yLdv~g 372 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLE-L-NSKPSLVYLDVFG 372 (419)
T ss_pred eehhhhcCCChHHeee-e-ccCcceEEEEecc
Confidence 9999999886655542 2 2258999999986
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.52 E-value=8.3e-14 Score=154.81 Aligned_cols=202 Identities=14% Similarity=0.057 Sum_probs=104.0
Q ss_pred cCCCccEEEEcCCChH-HHHHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEF-GLLSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
.+++|+.|+++++.-. .+......+++|++|++++|. ......+..+++|+.|.|.++. +....... ..
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~-l~ 233 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-------LSGEIPYE-IG 233 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-------cCCcCChh-Hh
Confidence 4566666666654321 222233456666666666553 2234455566666666666553 22211111 23
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|++++|..... +......+++|+.|+++++.+.+..+..+..+++|++|++.+|.... .+...+..+++
T Consensus 234 ~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~ 309 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG---EIPELVIQLQN 309 (968)
T ss_pred cCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc---CCChhHcCCCC
Confidence 466677777766643221 11222345667777776665544444455566667777776554221 12334455666
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
|+.|++++|.... ........+++|+.|++.++. ++......+..+++|+.|+++++
T Consensus 310 L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 310 LEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CcEEECCCCccCC--cCChhHhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCC
Confidence 7777766654222 111222346666777766652 33333334455566666666655
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.50 E-value=1.5e-13 Score=152.79 Aligned_cols=249 Identities=15% Similarity=0.033 Sum_probs=153.2
Q ss_pred cCCCccEEEEcCCChH-HHHHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEF-GLLSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
..++|++|+++++.-. .+......+++|++|+++++. ......+.++++|++|+|.+|. +...... ...
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------l~~~~p~-~l~ 209 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-------LVGQIPR-ELG 209 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-------CcCcCCh-HHc
Confidence 3577888888765322 233345567788888887763 2344567778888888887764 3222111 123
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|+.|+++++........ ....+++|++|+++++...+..+..+..+++|++|++.++.... .+...+..+++
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~ 285 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG---PIPPSIFSLQK 285 (968)
T ss_pred CcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec---cCchhHhhccC
Confidence 567888888877764322111 22356788888888877665566677778888888887765322 12334556778
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccce
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQS 425 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~ 425 (483)
|++|++++|.... .+......+++|+.|++.++ .+.......+..+++|+.|+++++ .++..... ....+++|+.
T Consensus 286 L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~-~l~~~~~L~~ 360 (968)
T PLN00113 286 LISLDLSDNSLSG--EIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPK-NLGKHNNLTV 360 (968)
T ss_pred cCEEECcCCeecc--CCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCC-CCcCcCCh-HHhCCCCCcE
Confidence 8888888764222 12233445778888888777 333344445667888888888877 55432222 2346788888
Q ss_pred eeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 426 LRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 426 L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|++++|. ++.. +...+ ..+++|+.|.+..
T Consensus 361 L~Ls~n~-l~~~-~p~~~-~~~~~L~~L~l~~ 389 (968)
T PLN00113 361 LDLSTNN-LTGE-IPEGL-CSSGNLFKLILFS 389 (968)
T ss_pred EECCCCe-eEee-CChhH-hCcCCCCEEECcC
Confidence 8888765 3322 22222 2347788887753
No 9
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.49 E-value=9.5e-14 Score=142.36 Aligned_cols=245 Identities=30% Similarity=0.472 Sum_probs=162.1
Q ss_pred cccchHHHHHHHhcCCCccEEEEcCC---ChHHHHHHHHhCCCCCEEEeecC-Ccc------chHHhhcCCCCCEEEeec
Q 011541 176 VEIIDRGLKALACGCPNLRRLVVVGA---SEFGLLSVAEECLTLQEFELHKC-GDN------VLRGIAACENLQILKLVG 245 (483)
Q Consensus 176 ~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~l~~~-~~~------~~~~i~~~~~L~~L~L~~ 245 (483)
..........+...+++|+.|.+.++ ++.++..+...|++|++|+++.+ ... .......+++|+.|++..
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 44556667777777899999999876 34457788889999999999873 111 122334678999999998
Q ss_pred CCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC-ChHHHHHHHHcCcCCCeeeeccccC--cHHHHHHhhcCCCCcEE
Q 011541 246 NVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG-SFDGIKAIGQCCQMLEELTFSDHRM--DDGWLAALSYCENLKTL 322 (483)
Q Consensus 246 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L 322 (483)
+. .++|.++..++..|++|+.|.+.+|.. ...++.+++..|++|++|+++.+.. +..+......|++|+.|
T Consensus 253 ~~------~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 253 CG------LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred hh------ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 86 489999999998899999999888885 4559999999999999999998763 55566666678888887
Q ss_pred EeccCCCCCCCCChHHHhcCCCCccEEecccccccc-HHHHHHHHhcCccccEEEccCCCCCCHHH-HHHHhc-------
Q 011541 323 RFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRD-KKGVRALFRVCEAVRELVFQDCWGLDDDI-FRFADV------- 393 (483)
Q Consensus 323 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~l~~l~~~~~~L~~L~L~~~~~~~d~~-~~~~~~------- 393 (483)
.+..+.. |+.++.+.+.++.... +.........|++++.+.+.++. ..+.. ...+..
T Consensus 327 ~~~~~~~-------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~ 392 (482)
T KOG1947|consen 327 KLLSLNG-------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTES 392 (482)
T ss_pred hhhhcCC-------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchH
Confidence 7654432 2233333333322222 23333333334444444433333 22111 122222
Q ss_pred -------CCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchH
Q 011541 394 -------FRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVS 440 (483)
Q Consensus 394 -------~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~ 440 (483)
+..++.|++..|..+++.++......+..++.+.+.+|..++...+.
T Consensus 393 l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 393 LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred HHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 23368888888877888888777655778888888888877766554
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=5.8e-13 Score=136.54 Aligned_cols=373 Identities=27% Similarity=0.395 Sum_probs=173.3
Q ss_pred CCCccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHHHhhhhccc---ccccccccccchhhhcCCCceEEEeecc--
Q 011541 64 SRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSL---KVLDWEFLESGRLISRFPNLSNVDLVVG-- 138 (483)
Q Consensus 64 ~~~d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~~~l~~~l---~~~~~~~~~~~~l~~~~~~L~~l~l~~~-- 138 (483)
...+.+...+++....++......+......++++|.........++ ...+...........++..+..++....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (482)
T KOG1947|consen 40 PRLRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSK 119 (482)
T ss_pred cceeeeeccccchhhhcccccccccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCcc
Confidence 34566777888898899988888888889999999987754332222 1111111111222222222222221110
Q ss_pred -cccccCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCC----ChHHHHHHHHhC
Q 011541 139 -CFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGA----SEFGLLSVAEEC 213 (483)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~----~~~~l~~~~~~~ 213 (483)
............... ....+. .. ............+...+..++.+..... .......+...+
T Consensus 120 ~~~~~~~~~~~~~~~~-~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (482)
T KOG1947|consen 120 VSTLSLLSIFSLLVKL-RNLLLN----------LS-LRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSC 187 (482)
T ss_pred ccccchhhhhhhhhhc-chhhcc----------cc-ccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhC
Confidence 000000000000000 000000 00 0001111112222233344444444422 223334444456
Q ss_pred CCCCEEEeecCCccch----HHhhcCCCCCEEEeecCCCCccccccCh--HHHHHHHhcCCCCcEEEeeCCCCChH-HHH
Q 011541 214 LTLQEFELHKCGDNVL----RGIAACENLQILKLVGNVEGFYNSTVSD--IGLTILAQGCKRLVKLELSGCEGSFD-GIK 286 (483)
Q Consensus 214 ~~L~~L~l~~~~~~~~----~~i~~~~~L~~L~L~~~~~~~~~~~~~~--~~l~~l~~~~~~L~~L~L~~~~~~~~-~l~ 286 (483)
+.|+.|.+..|..... .....+++|+.|.+.++.. .+.. .....+...|++|++|+++++....+ ++.
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCL-----LITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCccc-----ccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 6666666666532221 2233556666666655210 0111 11222445556666666666653333 556
Q ss_pred HHHHcCcCCCeeeecccc--CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc---ccccHHH
Q 011541 287 AIGQCCQMLEELTFSDHR--MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC---QLRDKKG 361 (483)
Q Consensus 287 ~l~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~---~~~~~~~ 361 (483)
.++..|++|+.|.+.++. .+.++..+...+++|++|++.+|..+++ .++......|++|+.|.+..+ ..+++.+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 666556666666655544 3344444445566666666666655543 234444445555555443332 2344444
Q ss_pred HHHHHhcCc-cccEEEccCCCCCCHHHHHHHhcCCCCc-EEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccch
Q 011541 362 VRALFRVCE-AVRELVFQDCWGLDDDIFRFADVFRRAK-FLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEV 439 (483)
Q Consensus 362 l~~l~~~~~-~L~~L~L~~~~~~~d~~~~~~~~~~~L~-~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v 439 (483)
+..+..... .+..+.+.+|+.+++..+.... ..... .+.+.+|+.++ .++......+..++.|++..|..+++..+
T Consensus 342 l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 342 LSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred HHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccch
Confidence 444333332 4444444444444444443333 22222 34444554454 44444444444469999999998988887
Q ss_pred HHHHhhhcccCcEEEeec
Q 011541 440 SPALSTLFSVLKELKWRP 457 (483)
Q Consensus 440 ~~~l~~~~~~L~~L~~~~ 457 (483)
...... +.+++.+.+.+
T Consensus 420 ~~~~~~-~~~~~~l~~~~ 436 (482)
T KOG1947|consen 420 RCLADS-CSNLKDLDLSG 436 (482)
T ss_pred HHHhhh-hhccccCCccC
Confidence 643222 56666666654
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-11 Score=109.82 Aligned_cols=257 Identities=21% Similarity=0.258 Sum_probs=169.8
Q ss_pred HHHHHhcCCCccEEEEcCCCh-----HHHHHHHHhCCCCCEEEeecCC-----c-------cchHHhhcCCCCCEEEeec
Q 011541 183 LKALACGCPNLRRLVVVGASE-----FGLLSVAEECLTLQEFELHKCG-----D-------NVLRGIAACENLQILKLVG 245 (483)
Q Consensus 183 l~~l~~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~l~~~~-----~-------~~~~~i~~~~~L~~L~L~~ 245 (483)
+.........++.++++|.+- ..+......-++|++.++++.- + ....++..+++|++|+|+.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334444667888899987642 2344445556677777776641 1 1123445788999999998
Q ss_pred CCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHH------------HHHcCcCCCeeeeccccCcHH----H
Q 011541 246 NVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKA------------IGQCCQMLEELTFSDHRMDDG----W 309 (483)
Q Consensus 246 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~------------l~~~~~~L~~L~l~~~~~~~~----~ 309 (483)
+-.+ .-...++..+...|..|++|.|.+|.....+-.. ....-+.|+.+.+..+++.++ +
T Consensus 102 NA~G----~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 102 NAFG----PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred cccC----ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 7511 1223556677788999999999999876553222 223446799999998875433 4
Q ss_pred HHHhhcCCCCcEEEeccCCCCCCCCCh---HHHhcCCCCccEEeccccccccHHHHHHH---HhcCccccEEEccCCCCC
Q 011541 310 LAALSYCENLKTLRFVSCKKIDPSPGP---DEYLGSCLALERLHLQKCQLRDKKGVRAL---FRVCEAVRELVFQDCWGL 383 (483)
Q Consensus 310 ~~~l~~~~~L~~L~l~~~~~~~~~~~l---~~~~~~~~~L~~L~L~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~~ 383 (483)
...+..++.|+.+++....... +++ ..-+.+||+|+.|+|..+. ++..+-..+ .+.+++|++|++++|..-
T Consensus 178 A~~~~~~~~leevr~~qN~I~~--eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRP--EGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHhccccceEEEecccccC--chhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccc
Confidence 4556788999999998766433 233 3346789999999999874 444443333 445778999999999544
Q ss_pred CHHHHH----HHhcCCCCcEEEecCCCCCCHHHHHHHH---hcCcccceeeeecCCCC-CccchHHHHhhhcc
Q 011541 384 DDDIFR----FADVFRRAKFLSLEGCSLVTTEGLESVI---LSWTDLQSLRVVSCKNI-KDGEVSPALSTLFS 448 (483)
Q Consensus 384 ~d~~~~----~~~~~~~L~~L~l~~~~~lt~~~l~~l~---~~~~~L~~L~l~~c~~i-~~~~v~~~l~~~~~ 448 (483)
+....+ +-...|+|+.|.+.++ .++-++...+. ...|.|+.|+|++|.-- .++++. .+...|+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~-ei~~~~~ 325 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGID-EIASKFD 325 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHH-HHHHhcc
Confidence 444333 3356799999999998 88766655443 23689999999998731 444444 4444444
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-11 Score=112.94 Aligned_cols=243 Identities=18% Similarity=0.134 Sum_probs=165.8
Q ss_pred CCCcccchHHHHHHHhcC---CCccEEEEcCC-Ch----------HHHHHHHHhCCCCCEEEeecCC--ccc----hHHh
Q 011541 173 LLPVEIIDRGLKALACGC---PNLRRLVVVGA-SE----------FGLLSVAEECLTLQEFELHKCG--DNV----LRGI 232 (483)
Q Consensus 173 l~~~~~~~~~l~~l~~~~---~~L~~L~l~~~-~~----------~~l~~~~~~~~~L~~L~l~~~~--~~~----~~~i 232 (483)
++.+.+.....+.++... ++|+..++++. +. ..+...+..||.|++|+|+++. ... -.-|
T Consensus 37 lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll 116 (382)
T KOG1909|consen 37 LSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELL 116 (382)
T ss_pred ccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHH
Confidence 333455566666665544 56666666643 11 1233445678999999999872 222 2346
Q ss_pred hcCCCCCEEEeecCCCCccccccChHHHHH------------HHhcCCCCcEEEeeCCCCChH---HHHHHHHcCcCCCe
Q 011541 233 AACENLQILKLVGNVEGFYNSTVSDIGLTI------------LAQGCKRLVKLELSGCEGSFD---GIKAIGQCCQMLEE 297 (483)
Q Consensus 233 ~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~------------l~~~~~~L~~L~L~~~~~~~~---~l~~l~~~~~~L~~ 297 (483)
+++.+|++|.|.+|. +...+-.. .+..-++|+.+...++..... .+....+.++.|+.
T Consensus 117 ~s~~~L~eL~L~N~G-------lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 117 SSCTDLEELYLNNCG-------LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HhccCHHHHhhhcCC-------CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 689999999999997 33332222 123347899999988876544 46667788899999
Q ss_pred eeeccccCcH----HHHHHhhcCCCCcEEEeccCCCCCCC-CChHHHhcCCCCccEEeccccccccH---HHHHHHHhcC
Q 011541 298 LTFSDHRMDD----GWLAALSYCENLKTLRFVSCKKIDPS-PGPDEYLGSCLALERLHLQKCQLRDK---KGVRALFRVC 369 (483)
Q Consensus 298 L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~---~~l~~l~~~~ 369 (483)
+.+..+++.. .....+.+|++|+.|+|..+..-... ..+...+..+++|+.|++++|..-+. .-+.++....
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 9999887543 33456779999999999876633211 12455577899999999999953332 2344555678
Q ss_pred ccccEEEccCCCCCCHHHHHH---HhcCCCCcEEEecCCCCC--CHHHHHHHHhcCccc
Q 011541 370 EAVRELVFQDCWGLDDDIFRF---ADVFRRAKFLSLEGCSLV--TTEGLESVILSWTDL 423 (483)
Q Consensus 370 ~~L~~L~L~~~~~~~d~~~~~---~~~~~~L~~L~l~~~~~l--t~~~l~~l~~~~~~L 423 (483)
|+|+.|.+.++....+.+..+ ....|.|+.|+|.+| .+ .++++..+....+..
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcccc
Confidence 999999999996655554432 344789999999999 77 778888888776433
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=4.4e-13 Score=130.10 Aligned_cols=206 Identities=17% Similarity=0.113 Sum_probs=114.5
Q ss_pred HHhCCCCCEEEeecCCccc--hHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHH
Q 011541 210 AEECLTLQEFELHKCGDNV--LRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKA 287 (483)
Q Consensus 210 ~~~~~~L~~L~l~~~~~~~--~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~ 287 (483)
++++|+|+.|+|..+.-.. ...+..+++|+.|+|..+... .++|.. .-+|.++++|+|..+....-.-.
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~----kL~DG~----Fy~l~kme~l~L~~N~l~~vn~g- 287 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS----KLDDGA----FYGLEKMEHLNLETNRLQAVNEG- 287 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc----cccCcc----eeeecccceeecccchhhhhhcc-
Confidence 3445666666665543222 223345556666665544310 122221 22456677777766543211000
Q ss_pred HHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHh
Q 011541 288 IGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFR 367 (483)
Q Consensus 288 l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 367 (483)
-.-.+..|+.|+++.+.+...-......+++|+.|+|+++. ++. .-...+..+..|+.|.|+.+. ++ .-.+..+.
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~--l~~~sf~~L~~Le~LnLs~Ns-i~-~l~e~af~ 362 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITR--LDEGSFRVLSQLEELNLSHNS-ID-HLAEGAFV 362 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccc-ccc--CChhHHHHHHHhhhhcccccc-hH-HHHhhHHH
Confidence 01134667777777776555445556677888888887655 432 113344556678888887653 22 22233445
Q ss_pred cCccccEEEccCCC---CCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 368 VCEAVRELVFQDCW---GLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 368 ~~~~L~~L~L~~~~---~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
.+.+|+.|+|..+. .+.|.. .....++.|++|.+.|+ ++..-.-. .+.+++.|++|+|.+..
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa-~~f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAA-VAFNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGDNA 427 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecch-hhhccchhhhheeecCc-eeeecchh-hhccCcccceecCCCCc
Confidence 56778888887652 233433 33455888899998887 55433333 34578888898888754
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=6.7e-11 Score=132.50 Aligned_cols=224 Identities=17% Similarity=0.263 Sum_probs=131.5
Q ss_pred cCCCccEEEEcCCCh-HHHHHHHHhCCCCCEEEeecCCccc-hHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 189 GCPNLRRLVVVGASE-FGLLSVAEECLTLQEFELHKCGDNV-LRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~-~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
.+++|+.|++.+|.. ..+......+++|+.|++++|.... .....++.+|+.|++.+|.. +.. +...
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~------L~~-----~p~~ 723 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSR------LKS-----FPDI 723 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCC------ccc-----cccc
Confidence 468888998887643 2344455678888899888874322 11122678888888888751 110 1111
Q ss_pred CCCCcEEEeeCCCCCh------------------------H---HH-HHHHHcCcCCCeeeeccccCcHHHHHHhhcCCC
Q 011541 267 CKRLVKLELSGCEGSF------------------------D---GI-KAIGQCCQMLEELTFSDHRMDDGWLAALSYCEN 318 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~------------------------~---~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 318 (483)
..+|+.|++.++.... . .+ .......++|+.|+++++.....++..+..+++
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 2345555554443110 0 00 001122456777777776644445556677788
Q ss_pred CcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCc
Q 011541 319 LKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAK 398 (483)
Q Consensus 319 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~ 398 (483)
|++|++.+|..+... .... .+++|+.|++++|..+.. +.....+|++|+|.++ .+. .+...+..+++|+
T Consensus 804 L~~L~Ls~C~~L~~L---P~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n-~i~-~iP~si~~l~~L~ 872 (1153)
T PLN03210 804 LEHLEIENCINLETL---PTGI-NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRT-GIE-EVPWWIEKFSNLS 872 (1153)
T ss_pred CCEEECCCCCCcCee---CCCC-CccccCEEECCCCCcccc-----ccccccccCEeECCCC-CCc-cChHHHhcCCCCC
Confidence 888888777655422 1111 467788888887764431 1122357778887775 332 2333466788888
Q ss_pred EEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCc
Q 011541 399 FLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKD 436 (483)
Q Consensus 399 ~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~ 436 (483)
.|+|.+|..++. +......+++|+.+++.+|..++.
T Consensus 873 ~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 873 FLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred EEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence 888888877663 222234567888888888876654
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.08 E-value=2.8e-10 Score=127.58 Aligned_cols=239 Identities=15% Similarity=0.228 Sum_probs=132.8
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCcc--chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDN--VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
.+++|+.|+++++...........+++|+.|++.+|... ....+.++++|+.|++.+|.. +..... ...
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~------L~~Lp~---~i~ 702 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN------LEILPT---GIN 702 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC------cCccCC---cCC
Confidence 467777777775432111112345677888888777422 235567778888888877651 221110 014
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHH------------------------------HhhcC
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLA------------------------------ALSYC 316 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~------------------------------~l~~~ 316 (483)
+++|+.|++++|.... .+.....+|+.|++.++.+.. ++. ....+
T Consensus 703 l~sL~~L~Lsgc~~L~----~~p~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLK----SFPDISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCcc----ccccccCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhcc
Confidence 6778888888875321 112223456666666554221 000 01123
Q ss_pred CCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCC
Q 011541 317 ENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRR 396 (483)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~ 396 (483)
++|+.|++.+|..+.. +...+..+++|+.|+|.+|..+.. +.... .+++|+.|++++|..+..- .....+
T Consensus 778 ~sL~~L~Ls~n~~l~~---lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~----p~~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE---LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF----PDISTN 847 (1153)
T ss_pred ccchheeCCCCCCccc---cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc----cccccc
Confidence 4566666666554331 233456677777777777754431 11111 3567777777777554311 122357
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 397 AKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 397 L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|+.|+++++ .++. +..-+..+++|+.|++.+|+++...... + ..+++|+.+.+..
T Consensus 848 L~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~--~-~~L~~L~~L~l~~ 902 (1153)
T PLN03210 848 ISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLN--I-SKLKHLETVDFSD 902 (1153)
T ss_pred cCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCccCcc--c-ccccCCCeeecCC
Confidence 788888776 5542 2223457899999999999988753321 1 2345666666553
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=9.9e-12 Score=120.90 Aligned_cols=256 Identities=15% Similarity=0.096 Sum_probs=111.9
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecC--CccchHHhhcCCCCCEEEeecCCCCcc---------------
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKC--GDNVLRGIAACENLQILKLVGNVEGFY--------------- 251 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~i~~~~~L~~L~L~~~~~~~~--------------- 251 (483)
..|||+++++....-..++.+.....+|+.|+|..+ +....+.++.++.|+.|+|+.+...-.
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 456666666655433334444444445556655554 233334444555555555554320000
Q ss_pred --ccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCC
Q 011541 252 --NSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKK 329 (483)
Q Consensus 252 --~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 329 (483)
...+++.+...+. ++.+|-.|.|+++....-... ..+.+|+|+.|++..+.+...-...+..+++|+.|.+..+..
T Consensus 180 La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 180 LASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred ecccccccccccccc-ccchheeeecccCcccccCHH-HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 0013333222222 123444444444433222111 222344555555554443322222334445555555543321
Q ss_pred CCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC
Q 011541 330 IDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVT 409 (483)
Q Consensus 330 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt 409 (483)
..-+.+ .+..+.++++|+|..+..... . +-..-++..|+.|+++++.. .---...-.-+++|+.|+|+++ +++
T Consensus 258 ~kL~DG---~Fy~l~kme~l~L~~N~l~~v-n-~g~lfgLt~L~~L~lS~NaI-~rih~d~WsftqkL~~LdLs~N-~i~ 330 (873)
T KOG4194|consen 258 SKLDDG---AFYGLEKMEHLNLETNRLQAV-N-EGWLFGLTSLEQLDLSYNAI-QRIHIDSWSFTQKLKELDLSSN-RIT 330 (873)
T ss_pred ccccCc---ceeeecccceeecccchhhhh-h-cccccccchhhhhccchhhh-heeecchhhhcccceeEecccc-ccc
Confidence 110011 123345555555555431110 0 00111244566666655421 1111112345778888888876 554
Q ss_pred HHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 410 TEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 410 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
.-.-.. +..+..|+.|+|+... |+. +.+......++|++|.++.
T Consensus 331 ~l~~~s-f~~L~~Le~LnLs~Ns-i~~--l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 331 RLDEGS-FRVLSQLEELNLSHNS-IDH--LAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred cCChhH-HHHHHHhhhhcccccc-hHH--HHhhHHHHhhhhhhhcCcC
Confidence 221111 1234578888887743 432 3344445568888888875
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.9e-11 Score=115.22 Aligned_cols=208 Identities=19% Similarity=0.148 Sum_probs=115.2
Q ss_pred cCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC-ChHHHHHHHHcCcCCCeeeeccccCcHHHHHH
Q 011541 234 ACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG-SFDGIKAIGQCCQMLEELTFSDHRMDDGWLAA 312 (483)
Q Consensus 234 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 312 (483)
++.+|+...|..+. +.+.+....+..|++++.|+|+++-. .+..+.++++.+|+|+.|.++.+.+...+...
T Consensus 119 n~kkL~~IsLdn~~-------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hHHhhhheeecCcc-------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 44555555555543 44444444556677777777766643 34466667777777777777766533222221
Q ss_pred h-hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHH
Q 011541 313 L-SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFA 391 (483)
Q Consensus 313 l-~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~ 391 (483)
. ..+++|+.|.+++|... . ..+...+..||+|+.|++.++..+.-.... ......|++|+|+++..++-......
T Consensus 192 ~~~~l~~lK~L~l~~CGls-~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLS-W-KDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred chhhhhhhheEEeccCCCC-H-HHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccc
Confidence 1 25567777777777633 2 234556667777777777766322211111 12234577777777766665555566
Q ss_pred hcCCCCcEEEecCCCCCCHHH-----HHHHHhcCcccceeeeecCCCCCc-cchHHHHhhhcccCcEEEee
Q 011541 392 DVFRRAKFLSLEGCSLVTTEG-----LESVILSWTDLQSLRVVSCKNIKD-GEVSPALSTLFSVLKELKWR 456 (483)
Q Consensus 392 ~~~~~L~~L~l~~~~~lt~~~-----l~~l~~~~~~L~~L~l~~c~~i~~-~~v~~~l~~~~~~L~~L~~~ 456 (483)
..+|.|+.|+++.+ .+++-. ........|+|++|++...+ |.+ ..+. .+ ...++|+.|.+.
T Consensus 268 ~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~-~l-~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 268 GTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLN-HL-RTLENLKHLRIT 334 (505)
T ss_pred ccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccc-hh-hccchhhhhhcc
Confidence 67777777777766 443221 12223356777777777644 322 2222 22 223555555543
No 18
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.94 E-value=3.8e-10 Score=74.94 Aligned_cols=44 Identities=39% Similarity=0.542 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHhccCCcccchhhhhhhHHHHHHH--hhhhccccc
Q 011541 69 TLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQ--GRLVRSLKV 112 (483)
Q Consensus 69 ~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~--~~l~~~l~~ 112 (483)
|..||+|++.+||++|+..|+.++++|||+|+.+. ..+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 56899999999999999999999999999999885 568887754
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.7e-10 Score=104.93 Aligned_cols=207 Identities=15% Similarity=0.107 Sum_probs=123.1
Q ss_pred CCCccEEEEcCCC--hHHHHHHHHhCCCCCEEEeecC---C-ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHH
Q 011541 190 CPNLRRLVVVGAS--EFGLLSVAEECLTLQEFELHKC---G-DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTIL 263 (483)
Q Consensus 190 ~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~l~~~---~-~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l 263 (483)
+.+|+...+.++. ..+.....+.|+++++|+|+.+ . .....-+.++|+|+.|+|+.+...++.+...+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~----- 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL----- 194 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-----
Confidence 4556666666553 3344457778888888888776 1 222333457888888888876532221111111
Q ss_pred HhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCC
Q 011541 264 AQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSC 343 (483)
Q Consensus 264 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 343 (483)
..++|+.|.|+.|...+..+..+...+|+|+.|.+..+..-........-+..|++|+|++...++-+ .......+
T Consensus 195 --~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--~~~~~~~l 270 (505)
T KOG3207|consen 195 --LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--QGYKVGTL 270 (505)
T ss_pred --hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc--cccccccc
Confidence 35678888888888877777778888888888888776311000111123456788888877766532 12345667
Q ss_pred CCccEEeccccccccH----HHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 344 LALERLHLQKCQLRDK----KGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 344 ~~L~~L~L~~~~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
|.|+.|+++.|..-+- .+........++|+.|++..+...+...+..+..+++|+.|.+..+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 7888887776642111 1111123346777777777765544445555666677777766544
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.87 E-value=5.4e-11 Score=116.74 Aligned_cols=246 Identities=20% Similarity=0.140 Sum_probs=139.2
Q ss_pred CCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCCccc-hHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 190 CPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCGDNV-LRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 190 ~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
.+++-.|++++..-..+ .+++-++..|-.|+|+++.-.. +..+..+.+|++|.|+++. +....+..+. .+
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-------L~hfQLrQLP-sm 196 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-------LNHFQLRQLP-SM 196 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-------hhHHHHhcCc-cc
Confidence 35666666665433222 2344455566666776664332 3556677778888888765 4444444433 25
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
..|+.|++++.....+.+..-...+.||..++++.+.... .+..+..+++|+.|+|+++. ++. +..-...+.+|+
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~-ite---L~~~~~~W~~lE 271 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNK-ITE---LNMTEGEWENLE 271 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCc-eee---eeccHHHHhhhh
Confidence 5677777777665444443334455677777777665432 34566677888888887755 432 222344567888
Q ss_pred EEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCC-CCCHHHHHHHHhcCccccee
Q 011541 348 RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCS-LVTTEGLESVILSWTDLQSL 426 (483)
Q Consensus 348 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~-~lt~~~l~~l~~~~~~L~~L 426 (483)
+|+++.+... .+......+++|+.|.+.++...-+.+..-++.+.+|+.+...++. .+-.+|+. .|+.|+.|
T Consensus 272 tLNlSrNQLt---~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc----RC~kL~kL 344 (1255)
T KOG0444|consen 272 TLNLSRNQLT---VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC----RCVKLQKL 344 (1255)
T ss_pred hhccccchhc---cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh----hhHHHHHh
Confidence 8888876533 2333333466777777766533333444445566666666666541 11223322 46777777
Q ss_pred eeecCCCCCccchHHHHhhhcccCcEEEeecCC
Q 011541 427 RVVSCKNIKDGEVSPALSTLFSVLKELKWRPDT 459 (483)
Q Consensus 427 ~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~~~ 459 (483)
.++...-|+ +.+++ .+++.|+.|.++.+.
T Consensus 345 ~L~~NrLiT---LPeaI-HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 345 KLDHNRLIT---LPEAI-HLLPDLKVLDLRENP 373 (1255)
T ss_pred cccccceee---chhhh-hhcCCcceeeccCCc
Confidence 776544443 23233 345677777776443
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.63 E-value=8.8e-08 Score=100.21 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=120.2
Q ss_pred CCCcEEEeeCCCCChH-HHHHHHHcCcCCCeeeeccccC-cHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 268 KRLVKLELSGCEGSFD-GIKAIGQCCQMLEELTFSDHRM-DDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+|++|++++...... -...++..+|.|++|.+++..+ .+.+.+...++|||..|+++++. +++ ..-+..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n----l~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISN----LSGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccC----cHHHhcccc
Confidence 5788999888655444 4567888889999999998764 45566677889999999998876 443 244677889
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHH--HHHH---HhcCCCCcEEEecCCCCCCHHHHHHHHhcC
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDD--IFRF---ADVFRRAKFLSLEGCSLVTTEGLESVILSW 420 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~--~~~~---~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~ 420 (483)
|+.|.+.+-...+...+..++. +.+|+.|+++.....++. +... -..+|+|+.|+.++. .++.+.++.+...-
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH 274 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSH 274 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhC
Confidence 9999888766555567777777 889999999887665554 2222 245899999999987 99999999998888
Q ss_pred cccceeeeecCC
Q 011541 421 TDLQSLRVVSCK 432 (483)
Q Consensus 421 ~~L~~L~l~~c~ 432 (483)
|+|+.+.+.+|.
T Consensus 275 ~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 275 PNLQQIAALDCL 286 (699)
T ss_pred ccHhhhhhhhhh
Confidence 899988877654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.59 E-value=1.4e-08 Score=104.45 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=105.5
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
.+.|+.|.+.++..++.....+-++++||.|+|.++. +. ......+..++.||.|+|+|+..- .+..-...|+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~--~fpas~~~kle~LeeL~LSGNkL~---~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LN--SFPASKLRKLEELEELNLSGNKLT---TLPDTVANLGR 431 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cc--cCCHHHHhchHHhHHHhcccchhh---hhhHHHHhhhh
Confidence 3457778888888888888899999999999998875 33 133566788999999999998522 23333345788
Q ss_pred ccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCc
Q 011541 372 VRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLK 451 (483)
Q Consensus 372 L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~ 451 (483)
|+.|...++.... +-.+..++.|+.++++.+ +++...+.... .+|+|++|+++|..+.. +.......|.++.
T Consensus 432 L~tL~ahsN~l~~---fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~-p~p~LkyLdlSGN~~l~---~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLS---FPELAQLPQLKVLDLSCN-NLSEVTLPEAL-PSPNLKYLDLSGNTRLV---FDHKTLKVLKSLS 503 (1081)
T ss_pred hHHHhhcCCceee---chhhhhcCcceEEecccc-hhhhhhhhhhC-CCcccceeeccCCcccc---cchhhhHHhhhhh
Confidence 8888775542222 225677899999999966 88877777654 34899999999976421 2222223455555
Q ss_pred EEEee
Q 011541 452 ELKWR 456 (483)
Q Consensus 452 ~L~~~ 456 (483)
..+|.
T Consensus 504 ~~~i~ 508 (1081)
T KOG0618|consen 504 QMDIT 508 (1081)
T ss_pred heecc
Confidence 55555
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.53 E-value=4.3e-06 Score=74.87 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=88.0
Q ss_pred HcCcCCCeeeeccccCc----HHHHHHhhcCCCCcEEEeccCCCCCCCCC--hH---------HHhcCCCCccEEecccc
Q 011541 290 QCCQMLEELTFSDHRMD----DGWLAALSYCENLKTLRFVSCKKIDPSPG--PD---------EYLGSCLALERLHLQKC 354 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~---------~~~~~~~~L~~L~L~~~ 354 (483)
-.||.|+.++++++.++ ..+...++..+.|.||.+++|..-. ..+ +. .-+..-|.|+......+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34666777766666533 3334456666777777776665322 111 11 11234567777766655
Q ss_pred cccc--HHHHHHHHhcCccccEEEccCCCCCCHHH-----HHHHhcCCCCcEEEecCCCCCCHHHHHHH---HhcCcccc
Q 011541 355 QLRD--KKGVRALFRVCEAVRELVFQDCWGLDDDI-----FRFADVFRRAKFLSLEGCSLVTTEGLESV---ILSWTDLQ 424 (483)
Q Consensus 355 ~~~~--~~~l~~l~~~~~~L~~L~L~~~~~~~d~~-----~~~~~~~~~L~~L~l~~~~~lt~~~l~~l---~~~~~~L~ 424 (483)
+... ..-.....+.=.+|+.+.+..+ .+...+ +.-+..+.+|+.|+|.++ .+|-.|-..+ ...|+.|+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhh
Confidence 4222 1222233332357777777666 333332 223456788888888876 5655544433 33567788
Q ss_pred eeeeecCCCCCccchHHHHh----hhcccCcEEEee
Q 011541 425 SLRVVSCKNIKDGEVSPALS----TLFSVLKELKWR 456 (483)
Q Consensus 425 ~L~l~~c~~i~~~~v~~~l~----~~~~~L~~L~~~ 456 (483)
.|.+.+|- ++..++...+. .-+|+|..|...
T Consensus 246 EL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~ 280 (388)
T COG5238 246 ELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGD 280 (388)
T ss_pred hccccchh-hccccHHHHHHHhhhhcCCCccccccc
Confidence 88888885 55555543322 124555555544
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.52 E-value=4.9e-09 Score=103.30 Aligned_cols=245 Identities=16% Similarity=0.139 Sum_probs=135.6
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCC---ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCG---DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
++.+|+.|.+....-..+..-+..+|.|+++.+..+. .-.+..|..+..|+.|+|+.+. +..-.- -..
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-------L~EvP~--~LE 123 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-------LREVPT--NLE 123 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-------hhhcch--hhh
Confidence 4456666665544333333333445666666665542 2224456667777777777654 222110 012
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.-+++-.|+|+++...+- -..+..++..|-.|++++++... ++..+.++.+|++|.|++++... .-..-+..+.+
T Consensus 124 ~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h---fQLrQLPsmts 198 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH---FQLRQLPSMTS 198 (1255)
T ss_pred hhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH---HHHhcCccchh
Confidence 235666777777654221 11223344556677777776443 34445667788888888765221 11112334445
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccce
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQS 425 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~ 425 (483)
|+.|++++.. .+-..+..-...+.||..++++.+. +. .+..-+..+++|+.|+++++ .++.-.+. ...+.+|+.
T Consensus 199 L~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp-~vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEt 272 (1255)
T KOG0444|consen 199 LSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LP-IVPECLYKLRNLRRLNLSGN-KITELNMT--EGEWENLET 272 (1255)
T ss_pred hhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CC-cchHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhhhh
Confidence 6666777643 2222222233346678888886652 22 12334556889999999988 77644332 235678999
Q ss_pred eeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 426 LRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 426 L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|+++... ++. +..++.. +++|+.|.+..
T Consensus 273 LNlSrNQ-Lt~--LP~avcK-L~kL~kLy~n~ 300 (1255)
T KOG0444|consen 273 LNLSRNQ-LTV--LPDAVCK-LTKLTKLYANN 300 (1255)
T ss_pred hccccch-hcc--chHHHhh-hHHHHHHHhcc
Confidence 9998743 432 3444433 58888888764
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.38 E-value=8.1e-07 Score=93.10 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=82.6
Q ss_pred CCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhc
Q 011541 236 ENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSY 315 (483)
Q Consensus 236 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 315 (483)
.+|++|+++|.. .+.......+...+|.|++|.+.+-....+.+..++..+|+|..|+++++.+.+- ..+++
T Consensus 122 ~nL~~LdI~G~~------~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSE------LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccc------hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 566666666644 2344444455556667777776666555555666666667777777766665542 45566
Q ss_pred CCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHH-HHHH---HHhcCccccEEEccCCCCCCHHHHH-H
Q 011541 316 CENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKK-GVRA---LFRVCEAVRELVFQDCWGLDDDIFR-F 390 (483)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~l~~---l~~~~~~L~~L~L~~~~~~~d~~~~-~ 390 (483)
+++|+.|.+.+....+. ..+. -+-.+.+|+.|+++........ .+.. ....+|+|+.|+.++. .+++..++ .
T Consensus 194 LknLq~L~mrnLe~e~~-~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~l 270 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESY-QDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEEL 270 (699)
T ss_pred cccHHHHhccCCCCCch-hhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHH
Confidence 66666666665443321 1122 2334666777776654333322 1111 1223566666666655 33444333 3
Q ss_pred HhcCCCCcEEE
Q 011541 391 ADVFRRAKFLS 401 (483)
Q Consensus 391 ~~~~~~L~~L~ 401 (483)
+..-|+|+.+.
T Consensus 271 l~sH~~L~~i~ 281 (699)
T KOG3665|consen 271 LNSHPNLQQIA 281 (699)
T ss_pred HHhCccHhhhh
Confidence 44444444443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=2.9e-07 Score=79.36 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=20.3
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRL 270 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L 270 (483)
-++++|++.+..-..+..+...+.+|+.|+++++.-....++..+++|+.|.++++. +++.+ ..+...+|+|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~-------I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR-------ISSIS-EGLDKNLPNL 90 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----------S-C-HHHHHH-TT-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC-------CCccc-cchHHhCCcC
Confidence 356667666654333333333456677777776655555566666666666666654 44321 1122345666
Q ss_pred cEEEeeCCCC
Q 011541 271 VKLELSGCEG 280 (483)
Q Consensus 271 ~~L~L~~~~~ 280 (483)
++|.++++..
T Consensus 91 ~~L~L~~N~I 100 (175)
T PF14580_consen 91 QELYLSNNKI 100 (175)
T ss_dssp -EEE-TTS--
T ss_pred CEEECcCCcC
Confidence 6666665543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.29 E-value=2.3e-07 Score=79.95 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=29.8
Q ss_pred CCCeeeeccccCcHHHHHHhh-cCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 294 MLEELTFSDHRMDDGWLAALS-YCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
.+++|++.++.+.. .+.+. .+.+|+.|+++++. ++.-++ +..+++|+.|+++++...+-. ..+...+|+|
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~l~~----l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L 90 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITKLEG----LPGLPRLKTLDLSNNRISSIS--EGLDKNLPNL 90 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT--------TT--EEE--SS---S-C--HHHHHH-TT-
T ss_pred cccccccccccccc--ccchhhhhcCCCEEECCCCC-CccccC----ccChhhhhhcccCCCCCCccc--cchHHhCCcC
Confidence 35555555554332 11222 34555555555544 222111 333455555555554322110 1122235555
Q ss_pred cEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHH--HHHHHHhcCcccceeee
Q 011541 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTE--GLESVILSWTDLQSLRV 428 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~--~l~~l~~~~~~L~~L~l 428 (483)
++|.+.++..-+-..+..++.+++|+.|++.++ .+++. --..++..+|+|+.|+-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCC
Confidence 555555542222112233444555555555554 22211 12233444555555543
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=1.1e-05 Score=72.38 Aligned_cols=195 Identities=22% Similarity=0.167 Sum_probs=88.4
Q ss_pred HhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChH-------HHHHHH-----HcCcCCCee
Q 011541 231 GIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFD-------GIKAIG-----QCCQMLEEL 298 (483)
Q Consensus 231 ~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-------~l~~l~-----~~~~~L~~L 298 (483)
++..||+|+..+|+.+..+ .-....+..+.+....|++|.+++|..... ++.+++ ...|.|+.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg----~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFG----SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHhcCCcceeeeccccccC----cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 3345555555555554310 011233344444555666666666543221 122222 234556666
Q ss_pred eeccccCcH----HHHHHhhcCCCCcEEEeccCCCCCCCCChHHH----hcCCCCccEEeccccccccHHHHHHH---Hh
Q 011541 299 TFSDHRMDD----GWLAALSYCENLKTLRFVSCKKIDPSPGPDEY----LGSCLALERLHLQKCQLRDKKGVRAL---FR 367 (483)
Q Consensus 299 ~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~~~~~~~l~~l---~~ 367 (483)
....++..+ .+...+..-.+|+++.+..+. +.. .++..+ +.++.+|+.|+|+.+. ++..+-.++ ..
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irp-egv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~ 239 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRP-EGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALC 239 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCc-chhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhc
Confidence 666554222 222333344567777766544 322 222222 3456677777776653 333332222 23
Q ss_pred cCccccEEEccCCCCCCHHHHHHH-----hcCCCCcEEEecCCCC----CCHHHHHHH-HhcCcccceeeeecCC
Q 011541 368 VCEAVRELVFQDCWGLDDDIFRFA-----DVFRRAKFLSLEGCSL----VTTEGLESV-ILSWTDLQSLRVVSCK 432 (483)
Q Consensus 368 ~~~~L~~L~L~~~~~~~d~~~~~~-----~~~~~L~~L~l~~~~~----lt~~~l~~l-~~~~~~L~~L~l~~c~ 432 (483)
.++.|++|.+.+|-..+..+-+.+ ...|+|..|-..++.. +-+..+..+ -.+.|-|..|.+.|..
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 345667777777733222221122 2245666666555411 111122222 2345666666666643
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=3e-07 Score=83.22 Aligned_cols=211 Identities=17% Similarity=0.123 Sum_probs=104.4
Q ss_pred HHHHHhcCCCccEEEEcCCCh---------HHHHHHHHhCCCCCEEEeecCCccchHHhh-cCCCCCEEEeecCCCCccc
Q 011541 183 LKALACGCPNLRRLVVVGASE---------FGLLSVAEECLTLQEFELHKCGDNVLRGIA-ACENLQILKLVGNVEGFYN 252 (483)
Q Consensus 183 l~~l~~~~~~L~~L~l~~~~~---------~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~-~~~~L~~L~L~~~~~~~~~ 252 (483)
+.++..-|..|+.|.+++..+ ..+..-...+++|+.+.++.|......++. .-|.|+++.+.........
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~ 253 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP 253 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc
Confidence 334444566777777765311 112222344567777777777433322222 3466777766543211000
Q ss_pred ccc---------------ChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCC
Q 011541 253 STV---------------SDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCE 317 (483)
Q Consensus 253 ~~~---------------~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 317 (483)
..+ ........+..+..|+.++|+++... .+..-.+..|.++.|.++.+.+.. ...++.++
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~ 329 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRT--VQNLAELP 329 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEeccccceee--ehhhhhcc
Confidence 000 00001111223345667777666432 112222345667777777666433 22355667
Q ss_pred CCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCC
Q 011541 318 NLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRA 397 (483)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L 397 (483)
+|++|+++++. ++.-.++ -..+.+.+.|.|.++..-+-.++.. +..|..|++.++..-.-+.+..++++|.|
T Consensus 330 ~L~~LDLS~N~-Ls~~~Gw---h~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 330 QLQLLDLSGNL-LAECVGW---HLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred cceEeecccch-hHhhhhh---HhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccchhhHHHhcccccccHH
Confidence 77777776644 3221222 2234466666666653222233333 33466777766644344445556777777
Q ss_pred cEEEecCC
Q 011541 398 KFLSLEGC 405 (483)
Q Consensus 398 ~~L~l~~~ 405 (483)
+.+.+.++
T Consensus 402 E~l~L~~N 409 (490)
T KOG1259|consen 402 ETLRLTGN 409 (490)
T ss_pred HHHhhcCC
Confidence 77777766
No 30
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.18 E-value=1.1e-06 Score=56.27 Aligned_cols=32 Identities=44% Similarity=0.588 Sum_probs=30.5
Q ss_pred CcHHHHHHHhccCCcccchhhhhhhHHHHHHH
Q 011541 72 LSDDILLRILSKLPVSQRNANSLVCKRWLNLQ 103 (483)
Q Consensus 72 LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~ 103 (483)
||+|++.+||.+++..|+.++++|||+|+.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999884
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=5e-06 Score=75.40 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=111.2
Q ss_pred cCCCCCEEEeecCCCCccccccCh-HHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHH-HHH
Q 011541 234 ACENLQILKLVGNVEGFYNSTVSD-IGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDG-WLA 311 (483)
Q Consensus 234 ~~~~L~~L~L~~~~~~~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~ 311 (483)
.+..++.|+|.++. +++ ..+..+...+|.|+.|+|+.+....+ +.++..-..+|+.|.+.+...+=. ...
T Consensus 69 ~~~~v~elDL~~N~-------iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-------ISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred Hhhhhhhhhcccch-------hccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhh
Confidence 57788888888886 665 44566777888888888887765433 222222345788888887764321 223
Q ss_pred HhhcCCCCcEEEeccCC--CC-CCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHH
Q 011541 312 ALSYCENLKTLRFVSCK--KI-DPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIF 388 (483)
Q Consensus 312 ~l~~~~~L~~L~l~~~~--~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~ 388 (483)
.+..+|.++.|+++.+. .+ -|+.... .--+.+..|++.+|..........+.+-+|++.++.+..|+.-+....
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc
Confidence 45567778888776542 11 1111111 122356667777776444555566667778888888777765554444
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 389 RFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 389 ~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
.....+|.+-.|+++.+.--+++++..+. +++.|..|.+.+-+
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCc
Confidence 44455666666666655222444555443 56666666666543
No 32
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.14 E-value=5.2e-07 Score=60.15 Aligned_cols=35 Identities=43% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCCCcHHHHHHHhccCCcccchhhhhhhHHHHHHH
Q 011541 69 TLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQ 103 (483)
Q Consensus 69 ~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~ 103 (483)
|.+||+|++.+||++|+..++.++++|||+|+++.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~ 37 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLV 37 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH
Confidence 56799999999999999999999999999999884
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3.8e-07 Score=82.50 Aligned_cols=210 Identities=13% Similarity=0.071 Sum_probs=123.7
Q ss_pred HHHHHHHhcCCCccEEEEcCC---ChHHHHHHHHhCCCCCEEEeecCCccch-HHh-hcCCCCCEEEeecCCCCcccccc
Q 011541 181 RGLKALACGCPNLRRLVVVGA---SEFGLLSVAEECLTLQEFELHKCGDNVL-RGI-AACENLQILKLVGNVEGFYNSTV 255 (483)
Q Consensus 181 ~~l~~l~~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~i-~~~~~L~~L~L~~~~~~~~~~~~ 255 (483)
.....++..+..++.+++.+. ....+..+++.+|.|+.|+|+.+.-... ..+ ....+|+.|-|+|.. +
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-------L 133 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-------L 133 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-------C
Confidence 445667778888888888865 2345677788888888888887643221 122 245678888888765 5
Q ss_pred ChHHHHHHHhcCCCCcEEEeeCCCC---ChHHHHHHHHcCcCCCeeeeccccCc--HHHHHHhhcCCCCcEEEeccCCCC
Q 011541 256 SDIGLTILAQGCKRLVKLELSGCEG---SFDGIKAIGQCCQMLEELTFSDHRMD--DGWLAALSYCENLKTLRFVSCKKI 330 (483)
Q Consensus 256 ~~~~l~~l~~~~~~L~~L~L~~~~~---~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~ 330 (483)
+......+....|.++.|+++.+.. ..+ -..+-...+.++.|++..|... .........+|++..+-+..|+ +
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D-d~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-l 211 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLD-DNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-L 211 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchhhhhccc-cccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-c
Confidence 5555555666777888887776632 111 0011113345666666666522 1223344566888888777775 2
Q ss_pred CCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHH-----HHHHHhcCCCCcEEE
Q 011541 331 DPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDD-----IFRFADVFRRAKFLS 401 (483)
Q Consensus 331 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~-----~~~~~~~~~~L~~L~ 401 (483)
.+. .-.+.....|.+-.|+|+.+..-+..++..+.. ++.|..|++...+..+.. ..-+++.+++++.|+
T Consensus 212 K~~-s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~-f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 212 KTE-SSEKGSEPFPSLSCLNLGANNIDSWASVDALNG-FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cch-hhcccCCCCCcchhhhhcccccccHHHHHHHcC-CchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 221 123344556666677777665445566666644 778888888776443321 111345556666554
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.89 E-value=1e-05 Score=85.51 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=26.2
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 395 RRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 395 ~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
++|+.|+++++ .++. +.. ...+|+.|+++++. ++. +...+. .+++|+.|.+..
T Consensus 402 s~L~~LdLS~N-~Lss--IP~---l~~~L~~L~Ls~Nq-Lt~--LP~sl~-~L~~L~~LdLs~ 454 (788)
T PRK15387 402 SELKELMVSGN-RLTS--LPM---LPSGLLSLSVYRNQ-LTR--LPESLI-HLSSETTVNLEG 454 (788)
T ss_pred cCCCEEEccCC-cCCC--CCc---chhhhhhhhhccCc-ccc--cChHHh-hccCCCeEECCC
Confidence 45666666655 3431 111 12355666666533 432 333332 356777777765
No 35
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=8e-06 Score=70.11 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=78.3
Q ss_pred CccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHH-hcCCCCcEEEecCCCCCCHHHHHHHHhcCccc
Q 011541 345 ALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFA-DVFRRAKFLSLEGCSLVTTEGLESVILSWTDL 423 (483)
Q Consensus 345 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~-~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L 423 (483)
.++.++-+++ .+...|++.+.. ++.++.|.+.+|..++|..+..+ ...++|+.|+|++|+.||+.|+..+. .+++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 3566666665 355678887754 88899999999999999887754 46789999999999999999999876 68999
Q ss_pred ceeeeecCCCCCccc-hHHHHhhhcccCc
Q 011541 424 QSLRVVSCKNIKDGE-VSPALSTLFSVLK 451 (483)
Q Consensus 424 ~~L~l~~c~~i~~~~-v~~~l~~~~~~L~ 451 (483)
+.|.+.+-+.+...+ +...+...+|+++
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCD 207 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCcccc
Confidence 999999877664433 3334555566543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.85 E-value=7.4e-06 Score=74.39 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=107.4
Q ss_pred hHHHHHHHHhCCCCCEEEeecCCccc------h----HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcE
Q 011541 203 EFGLLSVAEECLTLQEFELHKCGDNV------L----RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVK 272 (483)
Q Consensus 203 ~~~l~~~~~~~~~L~~L~l~~~~~~~------~----~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 272 (483)
...+..+...|.+|..|.++...+.. . -.+..+.+|+.+.++.|. ...+..+...-|.|+.
T Consensus 171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---------~~~i~~~~~~kptl~t 241 (490)
T KOG1259|consen 171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---------TENIVDIELLKPTLQT 241 (490)
T ss_pred ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---------hhheeceeecCchhhe
Confidence 34566777889999999998763221 1 123468899999999775 2333333444578888
Q ss_pred EEeeCCCCChH-H---------------------HHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCC
Q 011541 273 LELSGCEGSFD-G---------------------IKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKI 330 (483)
Q Consensus 273 L~L~~~~~~~~-~---------------------l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 330 (483)
+.+........ . +.......+.|++|+++.+.+.. +.....-.|.++.|+++.+...
T Consensus 242 ~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~ 320 (490)
T KOG1259|consen 242 ICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR 320 (490)
T ss_pred eeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee
Confidence 88765432110 0 00111223346666666654322 1222334466666666654422
Q ss_pred CCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCH
Q 011541 331 DPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTT 410 (483)
Q Consensus 331 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~ 410 (483)
. ..-+..+++|+.|+|+++....-.++. ..+-|++.|.|..+..-+ +.-+..+-+|..|+++++ ++..
T Consensus 321 ~-----v~nLa~L~~L~~LDLS~N~Ls~~~Gwh---~KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N-~Ie~ 388 (490)
T KOG1259|consen 321 T-----VQNLAELPQLQLLDLSGNLLAECVGWH---LKLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSN-QIEE 388 (490)
T ss_pred e-----ehhhhhcccceEeecccchhHhhhhhH---hhhcCEeeeehhhhhHhh---hhhhHhhhhheecccccc-chhh
Confidence 1 111455666666666665432222222 224456666665541111 112334445666666666 4433
Q ss_pred H-HHHHHHhcCcccceeeeecCC
Q 011541 411 E-GLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 411 ~-~l~~l~~~~~~L~~L~l~~c~ 432 (483)
. .+.. +.++|.|+.|.+.+.+
T Consensus 389 ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 389 LDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred HHHhcc-cccccHHHHHhhcCCC
Confidence 2 2333 3356677776666654
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.84 E-value=3.7e-05 Score=81.35 Aligned_cols=52 Identities=19% Similarity=0.039 Sum_probs=23.7
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNV 247 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~ 247 (483)
++|+.|++.++.-..+.. ...+|+.|++.++.-..... ..++|+.|+++++.
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~---lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~ 313 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQ 313 (788)
T ss_pred cccceeeccCCchhhhhh---chhhcCEEECcCCccccccc--cccccceeECCCCc
Confidence 456666665443222222 22455666665543221111 23456666666553
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.77 E-value=6.1e-06 Score=85.63 Aligned_cols=207 Identities=18% Similarity=0.119 Sum_probs=131.4
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccc------------------------hHHhhcCCCCCEEEeecC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNV------------------------LRGIAACENLQILKLVGN 246 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------------~~~i~~~~~L~~L~L~~~ 246 (483)
.+|+.++++...-..++.+...|++|+.|++..+.-.. ......+..|++|+|..+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 46777777765555666777778888888776552100 011124677888888765
Q ss_pred CCC-cccc--ccChHHHHHHHhcC--------------CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHH
Q 011541 247 VEG-FYNS--TVSDIGLTILAQGC--------------KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGW 309 (483)
Q Consensus 247 ~~~-~~~~--~~~~~~l~~l~~~~--------------~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 309 (483)
... ++.. .+....+..+-..+ +.|+.|.+.++......+. +..++++|+.|++++++....-
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCC
Confidence 421 1110 01112122221111 3355566666554433443 4456899999999999866555
Q ss_pred HHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHH
Q 011541 310 LAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFR 389 (483)
Q Consensus 310 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~ 389 (483)
...+.+++.|++|.|+|+. ++ .+..-+..|+.|+.|..+++.... +..+.. .+.|+.++++.+ .++.....
T Consensus 400 as~~~kle~LeeL~LSGNk-L~---~Lp~tva~~~~L~tL~ahsN~l~~---fPe~~~-l~qL~~lDlS~N-~L~~~~l~ 470 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNK-LT---TLPDTVANLGRLHTLRAHSNQLLS---FPELAQ-LPQLKVLDLSCN-NLSEVTLP 470 (1081)
T ss_pred HHHHhchHHhHHHhcccch-hh---hhhHHHHhhhhhHHHhhcCCceee---chhhhh-cCcceEEecccc-hhhhhhhh
Confidence 5677888999999999876 44 245567788999999888776443 233433 788999999766 66665555
Q ss_pred HHhcCCCCcEEEecCCCC
Q 011541 390 FADVFRRAKFLSLEGCSL 407 (483)
Q Consensus 390 ~~~~~~~L~~L~l~~~~~ 407 (483)
....-|+|++|+++|+.+
T Consensus 471 ~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhCCCcccceeeccCCcc
Confidence 444448999999999864
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.74 E-value=8.7e-06 Score=87.74 Aligned_cols=126 Identities=22% Similarity=0.153 Sum_probs=75.3
Q ss_pred cCCCccEEEEcCCCh---HHHHHHHHhCCCCCEEEeecCCc--cchHHhhcCCCCCEEEeecCCCCccccccChHHHHHH
Q 011541 189 GCPNLRRLVVVGASE---FGLLSVAEECLTLQEFELHKCGD--NVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTIL 263 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~---~~l~~~~~~~~~L~~L~l~~~~~--~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l 263 (483)
.|++|++|-+.+... .....++..+|.|+.||++.|.. ..+..|+.+-+|++|++++.. +. .+..-
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-------I~--~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-------IS--HLPSG 613 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-------cc--ccchH
Confidence 467888888876542 23344567789999999997743 345778889999999998765 43 22222
Q ss_pred HhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc--CcHHHHHHhhcCCCCcEEEe
Q 011541 264 AQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR--MDDGWLAALSYCENLKTLRF 324 (483)
Q Consensus 264 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l 324 (483)
...+.+|.+|++..+..... +.-+...+++|+.|.+.... .+......+..+.+|+.|..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLES-IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred HHHHHhhheecccccccccc-ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 33456788888876553211 12233346778888776654 22222333334444444444
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.71 E-value=6e-06 Score=77.75 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=45.6
Q ss_pred HhCCCCCEEEeecC--CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHH
Q 011541 211 EECLTLQEFELHKC--GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAI 288 (483)
Q Consensus 211 ~~~~~L~~L~l~~~--~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l 288 (483)
+..++|++|+|+.+ ......++..+++|..|.+.++. .+++..-.. ..++..|+.|.+.-+.. ....+..
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N------kI~~l~k~~-F~gL~slqrLllNan~i-~Cir~~a 159 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN------KITDLPKGA-FGGLSSLQRLLLNANHI-NCIRQDA 159 (498)
T ss_pred cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC------chhhhhhhH-hhhHHHHHHHhcChhhh-cchhHHH
Confidence 34455555555554 23333444445555555444411 133322111 11233344444332221 1122233
Q ss_pred HHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCC
Q 011541 289 GQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCK 328 (483)
Q Consensus 289 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 328 (483)
.+.+++|..|.+.++.+....-..+..+..++++++...+
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 3445556666666554332222233445556666654443
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=4.2e-05 Score=65.79 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=69.2
Q ss_pred HHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHH--H
Q 011541 338 EYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLE--S 415 (483)
Q Consensus 338 ~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~--~ 415 (483)
..+.+++.++.|.+.+|..+.+.++..+....++|+.|+|++|+.+++.+++.+..+++|+.|.|.+-+.+...+.. .
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~e~~~~~ 198 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANLELVQRQ 198 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhchHHHHHH
Confidence 34677888888899999889889999988888899999999999999999998899999999999887777544332 2
Q ss_pred HHhcCcccce
Q 011541 416 VILSWTDLQS 425 (483)
Q Consensus 416 l~~~~~~L~~ 425 (483)
+-..+|+++.
T Consensus 199 Le~aLP~c~I 208 (221)
T KOG3864|consen 199 LEEALPKCDI 208 (221)
T ss_pred HHHhCcccce
Confidence 3344565443
No 42
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.64 E-value=8.5e-05 Score=78.95 Aligned_cols=11 Identities=9% Similarity=-0.006 Sum_probs=5.3
Q ss_pred CCCcEEEecCC
Q 011541 395 RRAKFLSLEGC 405 (483)
Q Consensus 395 ~~L~~L~l~~~ 405 (483)
++|+.|+|++|
T Consensus 367 ~~L~~LdLs~N 377 (754)
T PRK15370 367 PTITTLDVSRN 377 (754)
T ss_pred CCcCEEECCCC
Confidence 34455555444
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.54 E-value=4e-05 Score=72.33 Aligned_cols=229 Identities=18% Similarity=0.088 Sum_probs=120.0
Q ss_pred hcCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeec-C--CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHH
Q 011541 188 CGCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHK-C--GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTIL 263 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~-~--~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l 263 (483)
+..++|++|+|++..-..+ ...+.++++|.+|-+.+ + .+.....+..+..|+.|.+.-+. ++-.- ...
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-------i~Cir-~~a 159 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-------INCIR-QDA 159 (498)
T ss_pred cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-------hcchh-HHH
Confidence 3667999999996533222 23344567777776665 3 22233456677888888887654 33322 223
Q ss_pred HhcCCCCcEEEeeCCCCChHHHHH-HHHcCcCCCeeeecccc------------------CcHHHH-----HHhh-----
Q 011541 264 AQGCKRLVKLELSGCEGSFDGIKA-IGQCCQMLEELTFSDHR------------------MDDGWL-----AALS----- 314 (483)
Q Consensus 264 ~~~~~~L~~L~L~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~------------------~~~~~~-----~~l~----- 314 (483)
.+.+++|..|.+..+... .+.. .......++.+++..+. +.-.+. ..+.
T Consensus 160 l~dL~~l~lLslyDn~~q--~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~ 237 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQ--SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN 237 (498)
T ss_pred HHHhhhcchhcccchhhh--hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence 345677777777655321 0000 11122334444433221 000000 0000
Q ss_pred ------cCCCCcEE--EeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHH
Q 011541 315 ------YCENLKTL--RFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDD 386 (483)
Q Consensus 315 ------~~~~L~~L--~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~ 386 (483)
..-.++.+ .+.+-... +......-+..+|+|+.|+++++. ++. .-+..+.....+++|.|..+ .+...
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~-i~~-i~~~aFe~~a~l~eL~L~~N-~l~~v 313 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNK-ITR-IEDGAFEGAAELQELYLTRN-KLEFV 313 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCc-cch-hhhhhhcchhhhhhhhcCcc-hHHHH
Confidence 00012222 11111112 123445567788999999999864 332 11223344667888888776 33222
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 387 IFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
--.++..+..|+.|++.++ +||.-+... +.....|..|++-..+
T Consensus 314 ~~~~f~~ls~L~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 314 SSGMFQGLSGLKTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred HHHhhhccccceeeeecCC-eeEEEeccc-ccccceeeeeehccCc
Confidence 2334667888999999988 776444333 3345678888887654
No 44
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.49 E-value=0.00017 Score=76.69 Aligned_cols=207 Identities=15% Similarity=0.020 Sum_probs=113.8
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccch-HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVL-RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR 269 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (483)
++|+.|+++++.-..+... ..++|+.|++++|.-... ..+ ..+|+.|+++++. ++.. .. ...++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~-------L~~L--P~--~l~~s 284 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITELPERL--PSALQSLDLFHNK-------ISCL--PE--NLPEE 284 (754)
T ss_pred cCCCEEECCCCccccCChh--hhccccEEECcCCccCcCChhH--hCCCCEEECcCCc-------cCcc--cc--ccCCC
Confidence 5788888876533333221 134788888887742221 122 2478888888764 3321 00 11357
Q ss_pred CcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEE
Q 011541 270 LVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERL 349 (483)
Q Consensus 270 L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 349 (483)
|+.|++++|....- .. ...++|+.|+++++..... ... ..++|+.|++.+|. ++.. ...+ +++|+.|
T Consensus 285 L~~L~Ls~N~Lt~L--P~--~lp~sL~~L~Ls~N~Lt~L-P~~--l~~sL~~L~Ls~N~-Lt~L---P~~l--~~sL~~L 351 (754)
T PRK15370 285 LRYLSVYDNSIRTL--PA--HLPSGITHLNVQSNSLTAL-PET--LPPGLKTLEAGENA-LTSL---PASL--PPELQVL 351 (754)
T ss_pred CcEEECCCCccccC--cc--cchhhHHHHHhcCCccccC-Ccc--ccccceeccccCCc-cccC---Chhh--cCcccEE
Confidence 88888888754311 00 0113577777777654321 111 23578888887765 3321 1111 3688888
Q ss_pred eccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC--HHHHHHHHhcCcccceee
Q 011541 350 HLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVT--TEGLESVILSWTDLQSLR 427 (483)
Q Consensus 350 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt--~~~l~~l~~~~~~L~~L~ 427 (483)
++++|.... +.. ...++|+.|+|.+|. ++.- ...+ ...|+.|+++++ .++ ...+......++++..|+
T Consensus 352 ~Ls~N~L~~---LP~--~lp~~L~~LdLs~N~-Lt~L-P~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 352 DVSKNQITV---LPE--TLPPTITTLDVSRNA-LTNL-PENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ECCCCCCCc---CCh--hhcCCcCEEECCCCc-CCCC-CHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEE
Confidence 888875321 111 113578888888874 3211 1111 125777888877 554 223444455567888888
Q ss_pred eecCCCCCc
Q 011541 428 VVSCKNIKD 436 (483)
Q Consensus 428 l~~c~~i~~ 436 (483)
|.+.+ ++.
T Consensus 422 L~~Np-ls~ 429 (754)
T PRK15370 422 VEYNP-FSE 429 (754)
T ss_pred eeCCC-ccH
Confidence 88754 543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.34 E-value=6.6e-05 Score=76.21 Aligned_cols=106 Identities=18% Similarity=0.132 Sum_probs=52.9
Q ss_pred HcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcC
Q 011541 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVC 369 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 369 (483)
+..+.|+.|+++.+.+.+ .+.+..|++|++|+|.++. ++. +..+.....+|+.|.+.++...+-.+++. +
T Consensus 184 qll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~-L~~---vp~l~~~gc~L~~L~lrnN~l~tL~gie~----L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNC-LRH---VPQLSMVGCKLQLLNLRNNALTTLRGIEN----L 253 (1096)
T ss_pred HHHHHhhhhccchhhhhh--hHHHHhcccccccccccch-hcc---ccccchhhhhheeeeecccHHHhhhhHHh----h
Confidence 344566666666666544 2356666777777776543 221 11121112236666666654222222222 4
Q ss_pred ccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 370 EAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 370 ~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
.+|+.|+++++-...-.-+..+..+..|+.|.|.|+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 556666666653333233334444555666666665
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.34 E-value=0.0002 Score=77.39 Aligned_cols=129 Identities=21% Similarity=0.103 Sum_probs=70.4
Q ss_pred HhCCCCCEEEeecCCc----cchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCC--hHH
Q 011541 211 EECLTLQEFELHKCGD----NVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGS--FDG 284 (483)
Q Consensus 211 ~~~~~L~~L~l~~~~~----~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~ 284 (483)
..|+.|++|-+..+.. .....+..++.|+.|+|++|. ....+......+-+|++|+++++... +.+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--------~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--------SLSKLPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--------ccCcCChHHhhhhhhhcccccCCCccccchH
Confidence 3566777777766532 112335567888888888764 22222223444667888888777543 223
Q ss_pred HHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecc
Q 011541 285 IKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQ 352 (483)
Q Consensus 285 l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 352 (483)
+. .+..|.+|++...............+++|++|.+.... ...+.....-+..+.+|+.|...
T Consensus 614 l~----~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 614 LG----NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred HH----HHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheee
Confidence 33 34457777777655333334445567888888886654 22111222233445555555443
No 47
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.23 E-value=2.9e-06 Score=70.77 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=76.0
Q ss_pred CccEEEEcCCChHHHHHHHHhCCCCCEEEeecCC-ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCC
Q 011541 192 NLRRLVVVGASEFGLLSVAEECLTLQEFELHKCG-DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRL 270 (483)
Q Consensus 192 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L 270 (483)
++..|.++...-..+..-...+.+|+.|++.++. ......|+.++.|+.|++..+.. .+...+ ...+|.|
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-----~~lprg----fgs~p~l 104 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-----NILPRG----FGSFPAL 104 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-----hcCccc----cCCCchh
Confidence 4445555543222222222345677777777663 33345677788888887765431 111122 1235677
Q ss_pred cEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEe
Q 011541 271 VKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLH 350 (483)
Q Consensus 271 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 350 (483)
+.|++.++......+.--.-.+..|+.|.++++.+.- .+..+..+++|+.|.+...+.++ +..-++.+.+|+.|+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~----lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhh----CcHHHHHHHHHHHHh
Confidence 7777777654333211111122345556666555321 22334556666666665544332 233445555666666
Q ss_pred ccccc
Q 011541 351 LQKCQ 355 (483)
Q Consensus 351 L~~~~ 355 (483)
+++++
T Consensus 180 iqgnr 184 (264)
T KOG0617|consen 180 IQGNR 184 (264)
T ss_pred cccce
Confidence 66653
No 48
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.97 E-value=0.00026 Score=67.19 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=37.2
Q ss_pred hcCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccc-hHHhhcCCCCCEEEeecCC
Q 011541 188 CGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNV-LRGIAACENLQILKLVGNV 247 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~i~~~~~L~~L~L~~~~ 247 (483)
++.++|..|+++...-...+.-...+.+|+.||+++++-.. ...++++ .|+.|.+.|+.
T Consensus 249 ~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 35677777777765433333333346778888888775433 3456667 78888888765
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.66 E-value=0.00075 Score=62.31 Aligned_cols=50 Identities=34% Similarity=0.375 Sum_probs=44.7
Q ss_pred CCCccCCCCc----HHHHHHHhccCCcccchhhhhhhHHHHHH--Hhhhhcccccc
Q 011541 64 SRIDRTLLLS----DDILLRILSKLPVSQRNANSLVCKRWLNL--QGRLVRSLKVL 113 (483)
Q Consensus 64 ~~~d~~~~LP----~ell~~I~~~L~~~~~~~~~lVck~W~~~--~~~l~~~l~~~ 113 (483)
-..|++..|| +++-+.||+||+..++..|-+|||+|+++ .+.+|+.+...
T Consensus 70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4679999999 99999999999999999999999999887 57889887543
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.65 E-value=0.00043 Score=48.53 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=27.5
Q ss_pred CCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc
Q 011541 294 MLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC 354 (483)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 354 (483)
+|+.|++.++.+..-....+..+++|++|+++++. ++. .....+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~--i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTS--IPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESE--EETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCc--cCHHHHcCCCCCCEEeCcCC
Confidence 44455555444332222344455666666665443 221 11223455666666666654
No 51
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.58 E-value=0.0028 Score=35.67 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=16.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH
Q 011541 394 FRRAKFLSLEGCSLVTTEGLESVI 417 (483)
Q Consensus 394 ~~~L~~L~l~~~~~lt~~~l~~l~ 417 (483)
|++|+.|+|++|..+||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466777777777777777776654
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.00053 Score=61.59 Aligned_cols=110 Identities=20% Similarity=0.138 Sum_probs=61.2
Q ss_pred cCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcC
Q 011541 315 YCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVF 394 (483)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~ 394 (483)
...+|+.|.+.++...+ ..-+..+|+|+.|.++.+......++..++..||+|++|.++++..-.-....-+..+
T Consensus 41 ~~~~le~ls~~n~gltt-----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-----LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhccceee-----cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 34455555555443222 1123446677777777664444567777777777777777777633322233345566
Q ss_pred CCCcEEEecCCCCCCH--HHHHHHHhcCcccceeeeec
Q 011541 395 RRAKFLSLEGCSLVTT--EGLESVILSWTDLQSLRVVS 430 (483)
Q Consensus 395 ~~L~~L~l~~~~~lt~--~~l~~l~~~~~~L~~L~l~~ 430 (483)
.+|..|++.+| .++. .--+.++.-+|+|++|+-..
T Consensus 116 ~nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 116 ENLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cchhhhhcccC-CccccccHHHHHHHHhhhhccccccc
Confidence 67777777777 3331 12233444556666666444
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00066 Score=61.41 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcccc
Q 011541 294 MLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVR 373 (483)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 373 (483)
+.+.|.+.+|+.++ ..+...++.|+.|.|+-+. ++ . ...+..|.+|+.|+|..+..-+-..+.++ +++|+|+
T Consensus 20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNk-Is---s-L~pl~rCtrLkElYLRkN~I~sldEL~YL-knlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNK-IS---S-LAPLQRCTRLKELYLRKNCIESLDELEYL-KNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccH--HHHHHhcccceeEEeeccc-cc---c-chhHHHHHHHHHHHHHhcccccHHHHHHH-hcCchhh
Confidence 44555666666555 3344456666666664332 22 1 22345566666666655543333444443 3355666
Q ss_pred EEEccCCCCCCHH----HHHHHhcCCCCcEEEecCCCCCCHHHHHHH
Q 011541 374 ELVFQDCWGLDDD----IFRFADVFRRAKFLSLEGCSLVTTEGLESV 416 (483)
Q Consensus 374 ~L~L~~~~~~~d~----~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l 416 (483)
.|-|..++-.... -...++.+|+|++|+= ..+|.+.++..
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~A 135 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEEA 135 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHHH
Confidence 6555443222111 1123455556655542 24455544443
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.29 E-value=0.0014 Score=45.85 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCC
Q 011541 214 LTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGC 278 (483)
Q Consensus 214 ~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 278 (483)
|+|++|+++++. ......+..+++|+.|+++++. +...... ...++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-------l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-------LTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-------ESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-------cCccCHH-HHcCCCCCCEEeCcCC
Confidence 345555555552 2222344455666666666553 2221111 1234556666666555
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0017 Score=58.49 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=64.2
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
..|+.|.+.+.+... ...+..+|+|+.|.++..... ...++..++..||+|++|+++++..-.-..++.+.. .++|
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~-l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRR-VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE-LENL 118 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCccc-ccccceehhhhCCceeEEeecCCccccccccchhhh-hcch
Confidence 345555555544322 223345678888888655322 223555666777888888888875333344444433 6778
Q ss_pred cEEEccCCCC--CCHHHHHHHhcCCCCcEEEecCC
Q 011541 373 RELVFQDCWG--LDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 373 ~~L~L~~~~~--~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
..|++.+|.. ++|.--....-+++|++|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8888888754 34444445566777777765433
No 56
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.24 E-value=0.0019 Score=59.33 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=39.1
Q ss_pred ccCCCCcHHHHHHHhcc-----CCcccchhhhhhhHHHHHH--Hhhhhcccccccc
Q 011541 67 DRTLLLSDDILLRILSK-----LPVSQRNANSLVCKRWLNL--QGRLVRSLKVLDW 115 (483)
Q Consensus 67 d~~~~LP~ell~~I~~~-----L~~~~~~~~~lVck~W~~~--~~~l~~~l~~~~~ 115 (483)
+.|..||||||..||.. ++.+++.++++|||.|+-. .+.+|+..++-.|
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW 160 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVW 160 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHH
Confidence 44789999999999986 4446889999999999765 5778887766433
No 57
>PLN03150 hypothetical protein; Provisional
Probab=95.94 E-value=0.015 Score=61.33 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=14.0
Q ss_pred CccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 369 CEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 369 ~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
+++|+.|+|+++ .++......+..+++|+.|+|+++
T Consensus 465 l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 465 ITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCC
Confidence 344444444443 222222223334444444444443
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.91 E-value=0.00078 Score=68.74 Aligned_cols=111 Identities=19% Similarity=0.124 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChH-
Q 011541 205 GLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFD- 283 (483)
Q Consensus 205 ~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~- 283 (483)
.+...++.++.|+.|+|+.+.-.....+..|+.|++|+|+.+. +....-.. ..+|. |+.|.++++....-
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~-------L~~vp~l~-~~gc~-L~~L~lrnN~l~tL~ 248 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC-------LRHVPQLS-MVGCK-LQLLNLRNNALTTLR 248 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccch-------hccccccc-hhhhh-heeeeecccHHHhhh
Confidence 3444455666777777776654444566667777777776543 11111000 11233 66666666543221
Q ss_pred HHHHHHHcCcCCCeeeeccccCc-HHHHHHhhcCCCCcEEEeccCC
Q 011541 284 GIKAIGQCCQMLEELTFSDHRMD-DGWLAALSYCENLKTLRFVSCK 328 (483)
Q Consensus 284 ~l~~l~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 328 (483)
++. .+.+|+.|+++++-+. ..-...+..+..|+.|.|.|++
T Consensus 249 gie----~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIE----NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHH----hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 222 3445666666655422 1112223334455555555544
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.91 E-value=0.0093 Score=33.52 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=15.6
Q ss_pred CCCccEEeccccccccHHHHHHHH
Q 011541 343 CLALERLHLQKCQLRDKKGVRALF 366 (483)
Q Consensus 343 ~~~L~~L~L~~~~~~~~~~l~~l~ 366 (483)
|++|++|+|++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666666554
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.86 E-value=0.005 Score=59.38 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=34.4
Q ss_pred cCCCCcHHHHHHHhccCCcc-cchhhhhhhHHHHHHHhh
Q 011541 68 RTLLLSDDILLRILSKLPVS-QRNANSLVCKRWLNLQGR 105 (483)
Q Consensus 68 ~~~~LP~ell~~I~~~L~~~-~~~~~~lVck~W~~~~~~ 105 (483)
.|++||+|+|..|..+|+.. |+.+++.||+.||...+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 48899999999999999888 999999999999987543
No 61
>PLN03150 hypothetical protein; Provisional
Probab=95.66 E-value=0.026 Score=59.62 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccE
Q 011541 295 LEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRE 374 (483)
Q Consensus 295 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 374 (483)
++.|++.++.........+..+++|+.|+|.++.... .+...+..+++|+.|+|++|...+ .+......+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g---~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG---NIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC---cCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCE
Confidence 5667777776665556667777888888887765222 234446677788888888765332 12222345778888
Q ss_pred EEccCCCCCCHHHHHHHh-cCCCCcEEEecCCC
Q 011541 375 LVFQDCWGLDDDIFRFAD-VFRRAKFLSLEGCS 406 (483)
Q Consensus 375 L~L~~~~~~~d~~~~~~~-~~~~L~~L~l~~~~ 406 (483)
|+|+++. +.......+. ...++..+++.++.
T Consensus 495 L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 8887763 3323222222 23455667776653
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.66 E-value=0.0033 Score=63.53 Aligned_cols=189 Identities=25% Similarity=0.254 Sum_probs=86.3
Q ss_pred cCCCCCEEEeecCCCCccccccChHHHHHHHhcCC----CCcEEEeeCCCCChHHHHHHHH---cCcCCCeeeeccccCc
Q 011541 234 ACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK----RLVKLELSGCEGSFDGIKAIGQ---CCQMLEELTFSDHRMD 306 (483)
Q Consensus 234 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~----~L~~L~L~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~ 306 (483)
..++|+.|+++++. +.+.+...+....+ .|+.|++..|.....+...+.. ..+.++.+++..+.+.
T Consensus 113 t~~~L~~L~l~~n~-------l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNN-------LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred ccccHhHhhcccCC-------CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 44555555555553 44555554444333 2444555555544433222222 2344555555555432
Q ss_pred HHH----HHHhh----cCCCCcEEEeccCCCCCCC-CChHHHhcCCCC-ccEEeccccccccHHHHHHHHhcCc----cc
Q 011541 307 DGW----LAALS----YCENLKTLRFVSCKKIDPS-PGPDEYLGSCLA-LERLHLQKCQLRDKKGVRALFRVCE----AV 372 (483)
Q Consensus 307 ~~~----~~~l~----~~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~-L~~L~L~~~~~~~~~~l~~l~~~~~----~L 372 (483)
... .+.+. ...++++|++.+|.....+ ..+...+...+. +..|++..+ .+.+.+++.+...+. .+
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhh
Confidence 111 11122 2445666666666522211 012222333444 444555543 344445554444332 44
Q ss_pred cEEEccCCCCCCHHH---HHHHhcCCCCcEEEecCCCCCCHHHHHHHHhc---CcccceeeeecC
Q 011541 373 RELVFQDCWGLDDDI---FRFADVFRRAKFLSLEGCSLVTTEGLESVILS---WTDLQSLRVVSC 431 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~---~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~---~~~L~~L~l~~c 431 (483)
+.+++.+|...+... .+.+..+++++.+.+.++ .+++.+...+... ...+..+.+.++
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchhhhcccc
Confidence 666666664433332 223445566666666665 5555555544433 234444444443
No 63
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.56 E-value=0.0065 Score=58.01 Aligned_cols=113 Identities=22% Similarity=0.189 Sum_probs=69.3
Q ss_pred hHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHH
Q 011541 229 LRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDG 308 (483)
Q Consensus 229 ~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 308 (483)
...++++++|..|+|+.+. +.+...+. .....||.|+++.+.+- .+.........||.+-.+++.+...
T Consensus 428 ~~~l~~l~kLt~L~L~NN~-------Ln~LP~e~--~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNL-------LNDLPEEM--GSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred hHHHHhhhcceeeecccch-------hhhcchhh--hhhhhhheecccccccc--cchHHHhhHHHHHHHHhcccccccc
Confidence 3456688999999998775 45543332 23456999999887542 1111111222355555555544333
Q ss_pred HHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccccc
Q 011541 309 WLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQL 356 (483)
Q Consensus 309 ~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 356 (483)
-...+..+.+|++|++...+ +. .+...+++|.+|++|.+.|++.
T Consensus 497 d~~~l~nm~nL~tLDL~nNd-lq---~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNND-LQ---QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ChHHhhhhhhcceeccCCCc-hh---hCChhhccccceeEEEecCCcc
Confidence 34456778888888887654 22 2455678888888888888763
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.0065 Score=55.20 Aligned_cols=104 Identities=27% Similarity=0.330 Sum_probs=71.0
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
..+.++|++-+|.... ..++..+|.||.|.++-+.+.. ..-+..|++|++|.|..+. |.+.. -..++.++|+|
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~-I~sld-EL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNC-IESLD-ELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcc-cccHH-HHHHHhcCchh
Confidence 3467788887776532 2456678999999999887654 4556789999999987654 43321 25578899999
Q ss_pred cEEeccccccccHHH---HHHHHhcCccccEEEc
Q 011541 347 ERLHLQKCQLRDKKG---VRALFRVCEAVRELVF 377 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~---l~~l~~~~~~L~~L~L 377 (483)
+.|+|..++-....+ -..+.+.+|+|+.|+=
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 999997654333222 2334566889988753
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.42 E-value=0.027 Score=36.28 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=18.4
Q ss_pred CCCCEEEeecCCccchHH-hhcCCCCCEEEeecCC
Q 011541 214 LTLQEFELHKCGDNVLRG-IAACENLQILKLVGNV 247 (483)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~-i~~~~~L~~L~L~~~~ 247 (483)
++|++|+++++.-..... ++++++|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 356666666654333333 6666666666666654
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.36 E-value=0.0045 Score=62.56 Aligned_cols=197 Identities=24% Similarity=0.272 Sum_probs=125.3
Q ss_pred CCEEEeecCCCCccccccChHHHHHHH---hcCCCCcEEEeeCCCCChHHHHHHHHcCcC----CCeeeeccccCcH---
Q 011541 238 LQILKLVGNVEGFYNSTVSDIGLTILA---QGCKRLVKLELSGCEGSFDGIKAIGQCCQM----LEELTFSDHRMDD--- 307 (483)
Q Consensus 238 L~~L~L~~~~~~~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~----L~~L~l~~~~~~~--- 307 (483)
+..|.|.+|. +.+.+...++ ...+.|+.|+++++.....+...+....+. |+.|.+..|...+
T Consensus 89 l~~L~L~~~~-------l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~ 161 (478)
T KOG4308|consen 89 LLHLSLANNR-------LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA 161 (478)
T ss_pred HHHhhhhhCc-------cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch
Confidence 6677777775 5665665554 456789999999998886677777665544 5566666665332
Q ss_pred -HHHHHhhcCCCCcEEEeccCCCCCCCC-ChHHHhc----CCCCccEEeccccccccHHHHHHHHhcC---cc-ccEEEc
Q 011541 308 -GWLAALSYCENLKTLRFVSCKKIDPSP-GPDEYLG----SCLALERLHLQKCQLRDKKGVRALFRVC---EA-VRELVF 377 (483)
Q Consensus 308 -~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~----~~~~L~~L~L~~~~~~~~~~l~~l~~~~---~~-L~~L~L 377 (483)
.....+...+.++.+++..+..+.... .+...+. ...++++|.+++|. ++......+.... +. +.+|++
T Consensus 162 ~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 162 APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHH
Confidence 233445567888889888777553210 1122223 35679999999985 4444444444433 33 566778
Q ss_pred cCCCCCCHHHHH-HHhcC----CCCcEEEecCCCCCCHHHHH---HHHhcCcccceeeeecCCCCCccchHHHHhh
Q 011541 378 QDCWGLDDDIFR-FADVF----RRAKFLSLEGCSLVTTEGLE---SVILSWTDLQSLRVVSCKNIKDGEVSPALST 445 (483)
Q Consensus 378 ~~~~~~~d~~~~-~~~~~----~~L~~L~l~~~~~lt~~~l~---~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~ 445 (483)
..+ .+.|.++. ....+ +.++.+++..| .+++.+.. .....|+.++.+.+.+.. +.+.++...+..
T Consensus 241 ~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~ 313 (478)
T KOG4308|consen 241 ASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEA 313 (478)
T ss_pred Hhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHH
Confidence 776 45555333 33333 46689999998 77666554 445567899999998854 777776654433
No 67
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.26 E-value=0.00026 Score=59.29 Aligned_cols=130 Identities=15% Similarity=0.064 Sum_probs=80.7
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCC-ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCG-DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
...+|+.|++.+..-..+....+.++.|+.|++.-+. .....+++++|-|+.|+|..+. ++...+..-.-.+
T Consensus 54 ~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn-------l~e~~lpgnff~m 126 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN-------LNENSLPGNFFYM 126 (264)
T ss_pred HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc-------cccccCCcchhHH
Confidence 3458888888877655566556678999999988664 3456788999999999998653 3332221111112
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCC
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCK 328 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 328 (483)
..|+.|.++++.+. .+..-...+.+|+.|.+.++..-. .++.+..+++|++|++++..
T Consensus 127 ~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 127 TTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccce
Confidence 34556666666432 111112235667777777665321 34556677888888888754
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.15 E-value=0.043 Score=53.77 Aligned_cols=135 Identities=20% Similarity=0.184 Sum_probs=67.6
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccch--HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVL--RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
.|++++.|+++++.-..++ ...++|++|.+.+|..... ..+ .++|+.|.+.+|. .+. .-
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs------~L~--------sL 110 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP------EIS--------GL 110 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcc------ccc--------cc
Confidence 4688889998877433332 2344688888888754311 112 3578888888774 122 11
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcC-CCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYC-ENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+.|+.|++.+.... .+...-++|+.|.+.+...... ...-..+ ++|++|.+.+|..+.- ...+ ..+
T Consensus 111 P~sLe~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i~L----P~~L--P~S 178 (426)
T PRK15386 111 PESVRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNIIL----PEKL--PES 178 (426)
T ss_pred ccccceEEeCCCCCc-----ccccCcchHhheeccccccccc-cccccccCCcccEEEecCCCcccC----cccc--ccc
Confidence 245777777543211 1111113466666643221000 0000012 4677777777663321 1001 136
Q ss_pred ccEEecccc
Q 011541 346 LERLHLQKC 354 (483)
Q Consensus 346 L~~L~L~~~ 354 (483)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 667766543
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.13 E-value=0.014 Score=50.67 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcccc
Q 011541 294 MLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVR 373 (483)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 373 (483)
+...++++++.... ...+..+++|.+|.+..+. ++... ..+..-.|+|+.|.+.++....-..+..++. ||.|+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNr-It~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNR-ITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLE 116 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCc-ceeec--cchhhhccccceEEecCcchhhhhhcchhcc-CCccc
Confidence 34444555444221 2234566677777776544 43221 2223345677777777765444445555544 77888
Q ss_pred EEEccCCCCCCHH--HHHHHhcCCCCcEEEecCC
Q 011541 374 ELVFQDCWGLDDD--IFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 374 ~L~L~~~~~~~d~--~~~~~~~~~~L~~L~l~~~ 405 (483)
+|.+-+++..... -...+..+|+|+.|++.+.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8877665433222 1224566788888887744
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.11 E-value=0.012 Score=51.03 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=26.7
Q ss_pred HhhcCCCCcEEEeccCCCCCCCCChHH-HhcCCCCccEEeccccc
Q 011541 312 ALSYCENLKTLRFVSCKKIDPSPGPDE-YLGSCLALERLHLQKCQ 355 (483)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~ 355 (483)
-++.||.|+.|.+-+.+ +++...... ++...|+|+.|+.++..
T Consensus 108 pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 35677888888887665 332222222 35567888888887654
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.74 E-value=0.085 Score=51.75 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=63.4
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.|+++++|++++|... .+...-++|++|.+.+|..-...+..+ .++|++|.+.+|..+.. + .++
T Consensus 50 ~~~~l~~L~Is~c~L~-----sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s---L------P~s 113 (426)
T PRK15386 50 EARASGRLYIKDCDIE-----SLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG---L------PES 113 (426)
T ss_pred HhcCCCEEEeCCCCCc-----ccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc---c------ccc
Confidence 4677888888877422 111112357777776654211111111 24677777776654431 1 134
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcC-cccc
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSW-TDLQ 424 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~-~~L~ 424 (483)
|+.|.+.++.. . . +..--++|++|.+.+.......... ..-.++|+.|.+.+|..+. +...+ .+|+
T Consensus 114 Le~L~L~~n~~-~--~---L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~------LP~~LP~SLk 180 (426)
T PRK15386 114 VRSLEIKGSAT-D--S---IKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNII------LPEKLPESLQ 180 (426)
T ss_pred cceEEeCCCCC-c--c---cccCcchHhheeccccccccccccc-cccCCcccEEEecCCCccc------CcccccccCc
Confidence 66666653221 1 1 1111225666666432111000000 0112567777777774331 11112 3777
Q ss_pred eeeeecC
Q 011541 425 SLRVVSC 431 (483)
Q Consensus 425 ~L~l~~c 431 (483)
.|.++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 7777654
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.38 E-value=0.033 Score=55.53 Aligned_cols=169 Identities=25% Similarity=0.231 Sum_probs=84.3
Q ss_pred CCccEEEEcCCChHHHHHHHHhC-CCCCEEEeecCCccch-HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEEC-LTLQEFELHKCGDNVL-RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~-~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
+.+..|.+.+.....+....... ++|++|+++.+.-... ..+..+++|+.|.+..+. +++.... ....+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-------l~~l~~~--~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-------LSDLPKL--LSNLS 186 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-------hhhhhhh--hhhhh
Confidence 56777776654433333333344 3777777776654443 466777777777777664 4443221 11456
Q ss_pred CCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc-CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 269 RLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR-MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
.|+.|+++++....- .........|++|.+.++. ... ...+....++..|.+.... +.+ +......+++|+
T Consensus 187 ~L~~L~ls~N~i~~l--~~~~~~~~~L~~l~~~~N~~~~~--~~~~~~~~~l~~l~l~~n~-~~~---~~~~~~~l~~l~ 258 (394)
T COG4886 187 NLNNLDLSGNKISDL--PPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNK-LED---LPESIGNLSNLE 258 (394)
T ss_pred hhhheeccCCccccC--chhhhhhhhhhhhhhcCCcceec--chhhhhcccccccccCCce-eee---ccchhccccccc
Confidence 677777777653211 1111122336666666653 111 2223344455555433222 111 123455566677
Q ss_pred EEeccccccccHHHHHHHHhcCccccEEEccCC
Q 011541 348 RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDC 380 (483)
Q Consensus 348 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 380 (483)
.|+++++....... .....+++.|++++.
T Consensus 259 ~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n 287 (394)
T COG4886 259 TLDLSNNQISSISS----LGSLTNLRELDLSGN 287 (394)
T ss_pred eecccccccccccc----ccccCccCEEeccCc
Confidence 77766654222111 233556666666554
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.85 E-value=0.043 Score=54.65 Aligned_cols=148 Identities=24% Similarity=0.205 Sum_probs=96.4
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhh-cCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIA-ACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR 269 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~-~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (483)
++|+.|++.+.....+..-...+++|+.|++..+.-....... ..++|+.|.++++. +.+..-. ......
T Consensus 140 ~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-------i~~l~~~--~~~~~~ 210 (394)
T COG4886 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-------ISDLPPE--IELLSA 210 (394)
T ss_pred hhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-------cccCchh--hhhhhh
Confidence 3899999887665555455678999999999998655554444 88999999999875 4443211 123345
Q ss_pred CcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEE
Q 011541 270 LVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERL 349 (483)
Q Consensus 270 L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 349 (483)
|++|.++++..... ........++..+.+.++...+. ...+..+++|+.|++..+. +++. .. +....+|+.|
T Consensus 211 L~~l~~~~N~~~~~--~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~-i~~i---~~-~~~~~~l~~L 282 (394)
T COG4886 211 LEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ-ISSI---SS-LGSLTNLREL 282 (394)
T ss_pred hhhhhhcCCcceec--chhhhhcccccccccCCceeeec-cchhccccccceecccccc-cccc---cc-ccccCccCEE
Confidence 88888888742211 11222345566666555543321 3456677889999998765 4432 11 6677899999
Q ss_pred eccccc
Q 011541 350 HLQKCQ 355 (483)
Q Consensus 350 ~L~~~~ 355 (483)
++++..
T Consensus 283 ~~s~n~ 288 (394)
T COG4886 283 DLSGNS 288 (394)
T ss_pred eccCcc
Confidence 998864
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.58 E-value=0.076 Score=34.20 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=27.5
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCcc
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDN 227 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 227 (483)
++|++|+++++.-..+......+++|+.|+++++.-.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999998755556555678999999999988533
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.17 E-value=0.081 Score=28.91 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=14.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH
Q 011541 394 FRRAKFLSLEGCSLVTTEGLESVI 417 (483)
Q Consensus 394 ~~~L~~L~l~~~~~lt~~~l~~l~ 417 (483)
+++|++|+|++| .++++++..+.
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 467778888877 68777777654
No 76
>PF13013 F-box-like_2: F-box-like domain
Probab=92.74 E-value=0.15 Score=39.99 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=27.5
Q ss_pred cCCCCcHHHHHHHhccCCcccchhhhhhhH
Q 011541 68 RTLLLSDDILLRILSKLPVSQRNANSLVCK 97 (483)
Q Consensus 68 ~~~~LP~ell~~I~~~L~~~~~~~~~lVck 97 (483)
.+.|||+||+..||.+....+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378899999999999999999988888888
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.59 E-value=0.0061 Score=61.16 Aligned_cols=104 Identities=23% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC
Q 011541 190 CPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR 269 (483)
Q Consensus 190 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (483)
+.+|+.|++.+..-..+......+++|+.|+++++.-....++..+..|+.|.+.++. +.+..- ...+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~-------i~~~~~---~~~l~~ 163 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL-------ISDISG---LESLKS 163 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc-------chhccC---Cccchh
Confidence 4555555555443333333344566666666666655555555556666666666654 222110 111455
Q ss_pred CcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc
Q 011541 270 LVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR 304 (483)
Q Consensus 270 L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 304 (483)
|+.++++++....-.-.. ...+.+|+.+.+.++.
T Consensus 164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 566666555432211100 2344555555555544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.18 E-value=0.25 Score=26.89 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=14.0
Q ss_pred CCCccEEeccccccccHHHHHHHH
Q 011541 343 CLALERLHLQKCQLRDKKGVRALF 366 (483)
Q Consensus 343 ~~~L~~L~L~~~~~~~~~~l~~l~ 366 (483)
+++|+.|+|++|. +++.++..++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4677778887765 7777776654
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.73 E-value=0.24 Score=49.71 Aligned_cols=83 Identities=22% Similarity=0.158 Sum_probs=45.5
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|+.|++++..-..+..+. .++.|+.|++.++.-.....+..+.+|+.+.+.++. +.+..-.. ...+.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~-------i~~ie~~~-~~~~~ 186 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNR-------IVDIENDE-LSELI 186 (414)
T ss_pred hhhcchheeccccccccccchh-hccchhhheeccCcchhccCCccchhhhcccCCcch-------hhhhhhhh-hhhcc
Confidence 4667777777654322222222 234477777777665555555556677777776654 33322211 24456
Q ss_pred CCcEEEeeCCCC
Q 011541 269 RLVKLELSGCEG 280 (483)
Q Consensus 269 ~L~~L~L~~~~~ 280 (483)
+|+.+.+.++..
T Consensus 187 ~l~~l~l~~n~i 198 (414)
T KOG0531|consen 187 SLEELDLGGNSI 198 (414)
T ss_pred chHHHhccCCch
Confidence 677777766654
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.30 E-value=0.24 Score=50.98 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=37.0
Q ss_pred CCCccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHH
Q 011541 64 SRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNL 102 (483)
Q Consensus 64 ~~~d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~ 102 (483)
..+|++..||.|+..+||.+|+.+++..+++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 678999999999999999999999999999999999876
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.25 E-value=0.15 Score=41.58 Aligned_cols=81 Identities=22% Similarity=0.196 Sum_probs=39.2
Q ss_pred CcEEEeeCCCCC--hHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 270 LVKLELSGCEGS--FDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 270 L~~L~L~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
+..++|+.|... .+.+..+.. ...|+..+++++.+.+.-.+.....|.+++|++.... +.+. ..-+..+|.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdv---PeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDV---PEELAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhC-CceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhc---hHHHhhhHHhh
Confidence 445555555442 223332222 2345555566555444434444455566666665443 3221 22255566666
Q ss_pred EEeccccc
Q 011541 348 RLHLQKCQ 355 (483)
Q Consensus 348 ~L~L~~~~ 355 (483)
.|++.++.
T Consensus 104 ~lNl~~N~ 111 (177)
T KOG4579|consen 104 SLNLRFNP 111 (177)
T ss_pred hcccccCc
Confidence 66666654
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.14 E-value=1.1 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=17.8
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhc
Q 011541 395 RRAKFLSLEGCSLVTTEGLESVILS 419 (483)
Q Consensus 395 ~~L~~L~l~~~~~lt~~~l~~l~~~ 419 (483)
++|+.|+|+++ .++++|...+.+.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 46788888877 7888887776653
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.30 E-value=2.2 Score=43.05 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=16.5
Q ss_pred cCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc
Q 011541 315 YCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC 354 (483)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 354 (483)
+.|.+..+.|+.+... +-..+..+....|+|..|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 3444444444433311 11233344444555555555544
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.97 E-value=1 Score=36.52 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=12.0
Q ss_pred hCCCCCEEEeecC-CccchHHhhcCCCCCEEEeec
Q 011541 212 ECLTLQEFELHKC-GDNVLRGIAACENLQILKLVG 245 (483)
Q Consensus 212 ~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~ 245 (483)
.|.+|+.+.+... .......+..+.+|+.+.+..
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccc
Confidence 3445555555422 222223344455555555543
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.38 E-value=1 Score=36.43 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=27.7
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecC-CccchHHhhcCCCCCEEEeec
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKC-GDNVLRGIAACENLQILKLVG 245 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~ 245 (483)
.|.+|+.+.+...-..--......|++|+++.+... .......+..+++|+.+.+..
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccceeeeecccccccccccc
Confidence 567888888864211111223456888999998764 222334455666777777753
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.35 E-value=6.1 Score=40.04 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=50.0
Q ss_pred cCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC--ChH-HHHHHHHcCcCCCeeeeccccCc----
Q 011541 234 ACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG--SFD-GIKAIGQCCQMLEELTFSDHRMD---- 306 (483)
Q Consensus 234 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~~-~l~~l~~~~~~L~~L~l~~~~~~---- 306 (483)
+.+.+..++|+.+. ...-..+..+++..|+|+.|+|+++.. ..+ .+..+ ...-|++|.+.++.+-
T Consensus 216 n~p~i~sl~lsnNr------L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR------LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccch------hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 67888888888775 133345566777888899999888722 111 22222 2356888888876522
Q ss_pred --HHHH-HHhhcCCCCcEEEe
Q 011541 307 --DGWL-AALSYCENLKTLRF 324 (483)
Q Consensus 307 --~~~~-~~l~~~~~L~~L~l 324 (483)
.+.. .+...+|+|..|+=
T Consensus 288 ~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hhHHHHHHHHHhcchheeecC
Confidence 1112 22346788877753
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=71.27 E-value=3.6 Score=20.28 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.8
Q ss_pred CCcEEEecCC
Q 011541 396 RAKFLSLEGC 405 (483)
Q Consensus 396 ~L~~L~l~~~ 405 (483)
+|+.|+|++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=71.11 E-value=2.5 Score=34.76 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=59.3
Q ss_pred CCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCC
Q 011541 317 ENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRR 396 (483)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~ 396 (483)
..+-.++|++|...- .......+.....|+..+|+++. +. ..-+.+....+.++.|++.++ .+.|.-.+ +..++.
T Consensus 27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNG-FK-KFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPA 101 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccch-hh-hCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHH
Confidence 346667777776321 11123334555677777888753 11 111234444667788888776 44443333 777888
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCcccceeeeec
Q 011541 397 AKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVS 430 (483)
Q Consensus 397 L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~ 430 (483)
|+.|+++.+ .+... .+.++ .+.+|-.|+..+
T Consensus 102 Lr~lNl~~N-~l~~~-p~vi~-~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 102 LRSLNLRFN-PLNAE-PRVIA-PLIKLDMLDSPE 132 (177)
T ss_pred hhhcccccC-ccccc-hHHHH-HHHhHHHhcCCC
Confidence 999999887 44321 22222 355666666655
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=70.19 E-value=0.23 Score=50.06 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=10.0
Q ss_pred hHHhhcCCCCCEEEeecC
Q 011541 229 LRGIAACENLQILKLVGN 246 (483)
Q Consensus 229 ~~~i~~~~~L~~L~L~~~ 246 (483)
...+.++..|++|+|+.+
T Consensus 114 p~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSN 131 (722)
T ss_pred chhhhhhhHHHHhhhccc
Confidence 445555556666666544
No 90
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=67.93 E-value=4 Score=37.15 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=39.0
Q ss_pred cCCCCcHHHHHHHhccCCcc-cchhhhhhhHHHHHH--Hhhhhcccccccc
Q 011541 68 RTLLLSDDILLRILSKLPVS-QRNANSLVCKRWLNL--QGRLVRSLKVLDW 115 (483)
Q Consensus 68 ~~~~LP~ell~~I~~~L~~~-~~~~~~lVck~W~~~--~~~l~~~l~~~~~ 115 (483)
.+.+||.|+...|+..|++- |+..+++|-..-..+ ...+|+.+.-+.+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF 251 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHF 251 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999987 999999986666544 5778998876543
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=65.23 E-value=5.6 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=12.4
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCc
Q 011541 397 AKFLSLEGCSLVTTEGLESVILSWT 421 (483)
Q Consensus 397 L~~L~l~~~~~lt~~~l~~l~~~~~ 421 (483)
||+|.|.+...-.+..++.++..||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5556665542223335555555554
No 92
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=62.04 E-value=4.3 Score=31.21 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.9
Q ss_pred CccCCCCcHHHHHHHhccCCcccchh
Q 011541 66 IDRTLLLSDDILLRILSKLPVSQRNA 91 (483)
Q Consensus 66 ~d~~~~LP~ell~~I~~~L~~~~~~~ 91 (483)
...|..||.|+..+|+++|+..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 36799999999999999999988654
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=61.64 E-value=0.3 Score=49.20 Aligned_cols=150 Identities=19% Similarity=0.106 Sum_probs=76.4
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
..|..|+|+.+....-. ...|.--|+.|.++++..... ..-+...+.|.+|+.+.|...+ +..-+++..+|+
T Consensus 121 ~~lt~l~ls~NqlS~lp---~~lC~lpLkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~s----lpsql~~l~slr 192 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLP---DGLCDLPLKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQS----LPSQLGYLTSLR 192 (722)
T ss_pred hHHHHhhhccchhhcCC---hhhhcCcceeEEEecCccccC-CcccccchhHHHhhhhhhhhhh----chHHhhhHHHHH
Confidence 44556666655432211 011223477777777663321 1222355677777777665332 344455666677
Q ss_pred EEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceee
Q 011541 348 RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLR 427 (483)
Q Consensus 348 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~ 427 (483)
.|.+..+.... -.+.+. +=.|..|+++.+.... +..-+..+..|++|.|.+++.-+.-+-..+-....-.++|+
T Consensus 193 ~l~vrRn~l~~--lp~El~--~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 193 DLNVRRNHLED--LPEELC--SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred HHHHhhhhhhh--CCHHHh--CCceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence 77666543222 111121 2246677776653221 22235667778888888775444333333333344556666
Q ss_pred eecC
Q 011541 428 VVSC 431 (483)
Q Consensus 428 l~~c 431 (483)
..-|
T Consensus 267 ~qA~ 270 (722)
T KOG0532|consen 267 TQAC 270 (722)
T ss_pred chhc
Confidence 6666
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=47.53 E-value=21 Score=33.92 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=57.8
Q ss_pred CCCCccEEeccccccccHHHHHHHHhc---CccccEEEccCCCCCCHHHH---HHHhcCCCCcEEEecCCCCCCHHHHHH
Q 011541 342 SCLALERLHLQKCQLRDKKGVRALFRV---CEAVRELVFQDCWGLDDDIF---RFADVFRRAKFLSLEGCSLVTTEGLES 415 (483)
Q Consensus 342 ~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~d~~~---~~~~~~~~L~~L~l~~~~~lt~~~l~~ 415 (483)
.=+.++..+|.+...++...+..+... ....+.+.+.+...-+...+ ..+..++.|++|++.++ -||..|+..
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn-FItg~gi~a 274 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN-FITGLGIMA 274 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc-ccccHHHHH
Confidence 346677777766666665554444332 23455555555533333333 24567788888888877 888888877
Q ss_pred HHhcCc---ccceeeeecCCCCCccchHHHH
Q 011541 416 VILSWT---DLQSLRVVSCKNIKDGEVSPAL 443 (483)
Q Consensus 416 l~~~~~---~L~~L~l~~c~~i~~~~v~~~l 443 (483)
+...+. +|..+.+.+-..+....+.+.+
T Consensus 275 ~~~al~~n~tl~el~~dnqrq~lg~~vemei 305 (353)
T KOG3735|consen 275 LLRALQSNKSLTELKNDNQRQVLGNAVEMEI 305 (353)
T ss_pred HHHHHhccchhhHhhhhhHHhhcccHHHHHH
Confidence 765543 5666666554333333343333
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=46.11 E-value=63 Score=32.48 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=14.9
Q ss_pred cccccccccccccccccccc
Q 011541 461 SLLASSLAGTGMGKRGGKFF 480 (483)
Q Consensus 461 ~~~~~~~~~~~~~~~g~~~~ 480 (483)
.+--++|+|.+||+.|+.-.
T Consensus 441 tl~kldisgn~mgd~gap~l 460 (553)
T KOG4242|consen 441 TLAKLDISGNGMGDGGAPPL 460 (553)
T ss_pred ccccccccCCCcccCCCCcC
Confidence 34456788999999987654
No 96
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=44.94 E-value=12 Score=19.71 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=5.1
Q ss_pred cceeeeecC
Q 011541 423 LQSLRVVSC 431 (483)
Q Consensus 423 L~~L~l~~c 431 (483)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 555555555
No 97
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=32.97 E-value=19 Score=28.36 Aligned_cols=49 Identities=16% Similarity=0.042 Sum_probs=37.5
Q ss_pred ccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHHHhhhhcccccccc
Q 011541 67 DRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDW 115 (483)
Q Consensus 67 d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~~~l~~~l~~~~~ 115 (483)
+.++++|.+++.-|+..++..++...-.-|..-......+|+.+...++
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~tdeLW~~~i~rdF 50 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIEDTDELWKKLIKRDF 50 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchhhHHHHHHHHHhHC
Confidence 4678999999999999998888887777765555556667877665443
No 98
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=27.54 E-value=37 Score=27.17 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.4
Q ss_pred HHHHhcCccc
Q 011541 414 ESVILSWTDL 423 (483)
Q Consensus 414 ~~l~~~~~~L 423 (483)
..++..|..|
T Consensus 79 ~~mF~~~~~l 88 (120)
T PF03382_consen 79 SNMFSGCSSL 88 (120)
T ss_pred HHHHhhhHHc
Confidence 3344444444
No 99
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=25.05 E-value=62 Score=17.47 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=4.4
Q ss_pred CCcEEEecCC
Q 011541 396 RAKFLSLEGC 405 (483)
Q Consensus 396 ~L~~L~l~~~ 405 (483)
+|+.|++.++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00370 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444443
No 100
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=25.05 E-value=62 Score=17.47 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=4.4
Q ss_pred CCcEEEecCC
Q 011541 396 RAKFLSLEGC 405 (483)
Q Consensus 396 ~L~~L~l~~~ 405 (483)
+|+.|++.++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00369 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444443
No 101
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=21.19 E-value=67 Score=30.77 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=31.4
Q ss_pred ccCCCCcHHHHHHHhccCCcc--------cchhhhhhhHHHHHHH
Q 011541 67 DRTLLLSDDILLRILSKLPVS--------QRNANSLVCKRWLNLQ 103 (483)
Q Consensus 67 d~~~~LP~ell~~I~~~L~~~--------~~~~~~lVck~W~~~~ 103 (483)
..+..||.|.|..|+...... ..+.|+-||+.|+...
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 578899999999999987765 3578999999999864
Done!