Query 011541
Match_columns 483
No_of_seqs 235 out of 2788
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 4.3E-33 1.5E-37 291.5 29.6 386 66-477 3-473 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.1E-31 3.6E-36 280.8 27.9 383 70-457 14-522 (592)
3 2ast_B S-phase kinase-associat 100.0 6.8E-28 2.3E-32 233.7 19.7 287 67-451 7-299 (336)
4 3ogk_B Coronatine-insensitive 99.9 2.1E-21 7.2E-26 202.7 24.8 328 107-457 140-547 (592)
5 2p1m_B Transport inhibitor res 99.9 8.9E-21 3.1E-25 198.0 27.9 265 177-455 197-538 (594)
6 1z7x_W Ribonuclease inhibitor; 99.8 6E-19 2.1E-23 178.3 24.2 254 189-456 111-406 (461)
7 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-18 8.4E-23 173.8 28.1 332 122-480 22-418 (461)
8 2ast_B S-phase kinase-associat 99.7 7.4E-18 2.5E-22 162.9 14.0 232 213-458 46-282 (336)
9 2ca6_A RAN GTPase-activating p 99.7 2.5E-16 8.6E-21 155.3 22.3 267 177-456 15-338 (386)
10 2ca6_A RAN GTPase-activating p 99.7 2.7E-16 9.4E-21 155.0 22.0 243 177-430 43-339 (386)
11 4fmz_A Internalin; leucine ric 99.7 2.3E-16 7.8E-21 153.2 18.8 295 108-457 47-342 (347)
12 4fmz_A Internalin; leucine ric 99.7 2.8E-16 9.7E-21 152.5 13.9 261 124-432 84-344 (347)
13 3goz_A Leucine-rich repeat-con 99.6 1.2E-14 4.1E-19 141.9 19.8 252 176-438 8-300 (362)
14 1o6v_A Internalin A; bacterial 99.6 6.5E-15 2.2E-19 148.9 17.1 190 232-457 173-362 (466)
15 1o6v_A Internalin A; bacterial 99.6 5.8E-15 2E-19 149.2 15.5 212 210-457 173-384 (466)
16 3v47_A TOLL-like receptor 5B a 99.6 1E-16 3.5E-21 161.6 -0.1 130 317-457 275-404 (455)
17 3goz_A Leucine-rich repeat-con 99.6 3.4E-14 1.2E-18 138.7 17.6 214 208-432 16-264 (362)
18 2id5_A Lingo-1, leucine rich r 99.5 4.9E-16 1.7E-20 157.7 0.9 61 267-328 151-211 (477)
19 3t6q_A CD180 antigen; protein- 99.5 2.8E-16 9.7E-21 164.3 -2.0 85 266-354 276-360 (606)
20 3v47_A TOLL-like receptor 5B a 99.5 3.1E-15 1.1E-19 150.7 5.0 132 293-432 275-406 (455)
21 2z80_A TOLL-like receptor 2, v 99.5 1.1E-14 3.6E-19 141.8 6.2 250 191-457 52-310 (353)
22 2z81_A CD282 antigen, TOLL-lik 99.5 8.2E-14 2.8E-18 143.8 13.0 84 368-457 332-419 (549)
23 3rgz_A Protein brassinosteroid 99.5 6.2E-16 2.1E-20 166.0 -3.8 250 190-457 293-547 (768)
24 3t6q_A CD180 antigen; protein- 99.5 2.9E-15 9.8E-20 156.7 0.7 228 189-432 299-534 (606)
25 2z7x_B TOLL-like receptor 1, v 99.5 3.5E-13 1.2E-17 138.1 16.1 132 314-457 321-453 (520)
26 3rgz_A Protein brassinosteroid 99.5 1.1E-15 3.6E-20 164.2 -3.2 227 213-457 293-523 (768)
27 2id5_A Lingo-1, leucine rich r 99.5 6.4E-15 2.2E-19 149.4 2.6 281 122-436 50-335 (477)
28 3o6n_A APL1; leucine-rich repe 99.5 5.2E-14 1.8E-18 138.8 7.5 230 189-456 115-347 (390)
29 2z81_A CD282 antigen, TOLL-lik 99.4 9.8E-13 3.3E-17 135.7 14.9 108 340-457 330-440 (549)
30 4fcg_A Uncharacterized protein 99.4 5.4E-15 1.8E-19 142.2 -2.1 231 189-457 79-310 (328)
31 4eco_A Uncharacterized protein 99.4 8.3E-15 2.9E-19 153.7 -0.8 199 126-354 247-467 (636)
32 3vq2_A TLR4, TOLL-like recepto 99.4 2.6E-15 8.9E-20 157.0 -4.7 180 265-457 373-554 (606)
33 3o53_A Protein LRIM1, AGAP0063 99.4 5.1E-15 1.7E-19 141.8 -2.7 245 182-456 25-270 (317)
34 3oja_B Anopheles plasmodium-re 99.4 5.3E-14 1.8E-18 146.6 4.8 283 121-456 68-353 (597)
35 3vq2_A TLR4, TOLL-like recepto 99.4 2.8E-14 9.7E-19 149.1 0.9 157 291-458 374-531 (606)
36 4ecn_A Leucine-rich repeat pro 99.4 7.5E-14 2.6E-18 149.8 3.4 134 124-280 487-631 (876)
37 4fcg_A Uncharacterized protein 99.4 3E-14 1E-18 136.9 -0.3 201 212-457 79-286 (328)
38 2z7x_B TOLL-like receptor 1, v 99.4 4.8E-13 1.6E-17 137.1 8.6 125 128-280 21-150 (520)
39 3e4g_A ATP synthase subunit S, 99.4 4.4E-13 1.5E-17 114.4 6.6 104 345-451 62-170 (176)
40 1ozn_A Reticulon 4 receptor; N 99.4 1E-13 3.4E-18 130.6 3.0 140 292-439 104-243 (285)
41 3o6n_A APL1; leucine-rich repe 99.4 1.2E-13 4E-18 136.3 3.6 245 188-457 66-327 (390)
42 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.6E-17 125.0 9.7 123 292-432 106-228 (308)
43 4ecn_A Leucine-rich repeat pro 99.4 1.1E-13 3.6E-18 148.6 3.0 230 121-380 441-707 (876)
44 2z80_A TOLL-like receptor 2, v 99.4 2.8E-14 9.4E-19 138.8 -2.0 232 189-434 74-314 (353)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.3E-12 8E-17 133.3 12.3 132 314-457 350-482 (562)
46 1ziw_A TOLL-like receptor 3; i 99.4 1.4E-13 4.8E-18 145.9 3.0 84 189-279 95-182 (680)
47 1ogq_A PGIP-2, polygalacturona 99.4 8E-15 2.7E-19 140.1 -6.1 227 189-434 74-304 (313)
48 1xku_A Decorin; proteoglycan, 99.4 2.9E-13 1E-17 130.2 4.6 242 191-457 52-302 (330)
49 3e4g_A ATP synthase subunit S, 99.4 2E-12 6.7E-17 110.3 8.9 106 317-425 61-171 (176)
50 3zyi_A Leucine-rich repeat-con 99.4 6.4E-14 2.2E-18 141.0 -0.4 230 191-439 75-308 (452)
51 3bz5_A Internalin-J, INLJ; leu 99.3 1.6E-12 5.5E-17 130.6 9.6 204 190-432 41-244 (457)
52 3zyj_A Leucine-rich repeat-con 99.3 6.4E-14 2.2E-18 140.5 -0.8 230 191-439 64-297 (440)
53 2z66_A Variable lymphocyte rec 99.3 1.3E-14 4.3E-19 138.3 -6.4 226 191-432 28-259 (306)
54 3oja_B Anopheles plasmodium-re 99.3 2.8E-13 9.6E-18 141.1 2.9 245 188-457 72-333 (597)
55 4eco_A Uncharacterized protein 99.3 6.4E-14 2.2E-18 147.0 -2.6 248 189-457 204-522 (636)
56 1ziw_A TOLL-like receptor 3; i 99.3 1.7E-13 6E-18 145.1 0.3 183 266-457 403-593 (680)
57 3j0a_A TOLL-like receptor 5; m 99.3 3E-13 1E-17 146.7 2.0 88 340-432 286-373 (844)
58 2z66_A Variable lymphocyte rec 99.3 3.6E-14 1.2E-18 135.1 -4.7 227 213-457 27-257 (306)
59 2z63_A TOLL-like receptor 4, v 99.3 2.1E-14 7.2E-19 148.9 -7.1 247 189-457 280-527 (570)
60 3zyj_A Leucine-rich repeat-con 99.3 1.8E-13 6.1E-18 137.2 -0.1 204 189-408 86-292 (440)
61 1xku_A Decorin; proteoglycan, 99.3 6.2E-13 2.1E-17 128.0 3.0 239 192-457 32-272 (330)
62 3oja_A Leucine-rich immune mol 99.3 5.2E-14 1.8E-18 142.7 -4.8 241 185-455 28-269 (487)
63 3zyi_A Leucine-rich repeat-con 99.3 3.1E-13 1.1E-17 135.9 0.9 202 189-406 97-301 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.3 1E-13 3.5E-18 132.7 -3.3 220 188-434 55-275 (317)
65 1h6u_A Internalin H; cell adhe 99.3 6.1E-12 2.1E-16 119.7 8.6 192 189-409 39-230 (308)
66 3j0a_A TOLL-like receptor 5; m 99.3 1.8E-13 6.1E-18 148.4 -3.0 84 292-380 289-372 (844)
67 3un9_A NLR family member X1; l 99.3 6.3E-11 2.1E-15 115.5 15.2 147 268-418 101-261 (372)
68 1ogq_A PGIP-2, polygalacturona 99.3 9.5E-14 3.3E-18 132.6 -4.9 244 191-457 50-300 (313)
69 2ft3_A Biglycan; proteoglycan, 99.2 1.5E-13 5.3E-18 132.3 -4.3 247 189-457 76-329 (332)
70 1ozn_A Reticulon 4 receptor; N 99.2 5.4E-13 1.8E-17 125.5 -0.5 206 190-409 31-239 (285)
71 3bz5_A Internalin-J, INLJ; leu 99.2 1.5E-11 5.3E-16 123.4 9.8 203 212-457 40-242 (457)
72 1wwl_A Monocyte differentiatio 99.2 1.3E-13 4.3E-18 131.7 -5.3 205 234-457 93-305 (312)
73 2ft3_A Biglycan; proteoglycan, 99.2 1.9E-13 6.4E-18 131.7 -4.5 242 190-458 53-304 (332)
74 3rfs_A Internalin B, repeat mo 99.2 2.1E-12 7.3E-17 120.6 2.1 176 213-405 40-215 (272)
75 2z63_A TOLL-like receptor 4, v 99.2 3E-13 1E-17 140.2 -4.9 223 192-432 305-529 (570)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 6.8E-12 2.3E-16 129.8 4.9 105 189-305 74-181 (562)
77 3un9_A NLR family member X1; l 99.2 8.6E-11 2.9E-15 114.5 11.9 165 236-411 101-285 (372)
78 4ezg_A Putative uncharacterize 99.1 8.9E-11 3E-15 103.8 8.8 129 212-355 42-170 (197)
79 1wwl_A Monocyte differentiatio 99.1 5.6E-12 1.9E-16 120.2 0.2 206 212-436 93-310 (312)
80 3oja_A Leucine-rich immune mol 99.1 1.3E-11 4.5E-16 125.0 2.8 214 212-458 32-247 (487)
81 4glp_A Monocyte differentiatio 99.1 3.1E-11 1.1E-15 114.9 5.1 224 214-457 64-303 (310)
82 4glp_A Monocyte differentiatio 99.1 8E-12 2.7E-16 119.0 0.3 204 213-436 90-308 (310)
83 1h6t_A Internalin B; cell adhe 99.1 1.9E-10 6.6E-15 108.3 9.6 166 213-405 45-210 (291)
84 4ezg_A Putative uncharacterize 99.1 1.3E-10 4.4E-15 102.8 7.2 150 189-355 42-192 (197)
85 3g06_A SSPH2 (leucine-rich rep 99.1 2.8E-10 9.6E-15 118.0 9.7 75 344-432 221-295 (622)
86 3rfs_A Internalin B, repeat mo 99.1 1.2E-11 4E-16 115.5 -1.1 193 189-404 39-231 (272)
87 1m9s_A Internalin B; cell inva 99.0 2.4E-10 8.1E-15 118.4 7.6 166 213-405 42-207 (605)
88 2z62_A TOLL-like receptor 4, v 99.0 3.6E-11 1.2E-15 112.4 1.3 134 292-432 99-235 (276)
89 3g06_A SSPH2 (leucine-rich rep 99.0 8.4E-10 2.9E-14 114.5 10.7 255 128-458 40-294 (622)
90 2o6q_A Variable lymphocyte rec 99.0 7.5E-11 2.6E-15 109.9 2.4 177 214-405 37-215 (270)
91 2ra8_A Uncharacterized protein 99.0 6.3E-09 2.2E-13 100.5 15.7 162 261-431 165-340 (362)
92 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.3E-10 8E-15 77.3 3.9 46 66-111 6-53 (53)
93 2ra8_A Uncharacterized protein 99.0 3E-09 1E-13 102.8 13.0 182 189-405 137-340 (362)
94 1h6t_A Internalin B; cell adhe 99.0 4.7E-10 1.6E-14 105.6 7.0 168 189-381 44-211 (291)
95 2z62_A TOLL-like receptor 4, v 99.0 2E-11 6.9E-16 114.1 -2.7 201 191-405 28-234 (276)
96 2o6q_A Variable lymphocyte rec 99.0 6.3E-11 2.2E-15 110.4 -0.5 200 215-432 17-216 (270)
97 1m9s_A Internalin B; cell inva 98.9 4.2E-10 1.4E-14 116.5 4.8 170 232-432 39-208 (605)
98 2xwt_C Thyrotropin receptor; s 98.9 3.8E-11 1.3E-15 109.7 -2.7 15 340-354 151-166 (239)
99 1jl5_A Outer protein YOPM; leu 98.9 7.2E-09 2.5E-13 103.8 13.5 215 189-457 151-366 (454)
100 1p9a_G Platelet glycoprotein I 98.9 9.3E-11 3.2E-15 110.4 -0.6 197 189-406 8-206 (290)
101 1p9a_G Platelet glycoprotein I 98.9 2.2E-10 7.5E-15 107.8 1.0 205 212-439 8-213 (290)
102 1jl5_A Outer protein YOPM; leu 98.9 5.5E-09 1.9E-13 104.7 10.2 215 191-457 131-346 (454)
103 2je0_A Acidic leucine-rich nuc 98.8 3E-09 1E-13 89.2 6.1 105 294-405 18-123 (149)
104 2xwt_C Thyrotropin receptor; s 98.8 1.9E-10 6.6E-15 105.0 -2.4 195 191-405 31-236 (239)
105 2ell_A Acidic leucine-rich nuc 98.8 2.3E-09 7.9E-14 92.0 3.0 112 313-432 45-158 (168)
106 2je0_A Acidic leucine-rich nuc 98.7 2.5E-09 8.7E-14 89.7 2.4 127 214-352 17-148 (149)
107 2ell_A Acidic leucine-rich nuc 98.7 2.6E-09 8.8E-14 91.7 0.4 130 214-355 24-158 (168)
108 1xeu_A Internalin C; cellular 98.7 1.4E-08 5E-13 93.9 5.4 59 212-280 39-97 (263)
109 1xeu_A Internalin C; cellular 98.7 1.8E-08 6.3E-13 93.2 5.7 147 231-405 36-182 (263)
110 3m19_A Variable lymphocyte rec 98.7 3.1E-09 1.1E-13 97.7 0.4 107 236-354 35-141 (251)
111 3m19_A Variable lymphocyte rec 98.6 8.1E-09 2.8E-13 94.9 2.6 61 292-355 106-166 (251)
112 1io0_A Tropomodulin; LRR prote 98.6 2E-07 6.8E-12 81.1 10.8 128 306-437 25-166 (185)
113 1io0_A Tropomodulin; LRR prote 98.6 5E-07 1.7E-11 78.6 11.7 124 284-412 27-167 (185)
114 4ay9_X Follicle-stimulating ho 98.5 7.1E-09 2.4E-13 100.3 -2.5 82 191-280 30-116 (350)
115 4g8a_A TOLL-like receptor 4; l 98.5 4.1E-09 1.4E-13 110.3 -4.7 139 291-436 443-582 (635)
116 2o6s_A Variable lymphocyte rec 98.4 2.7E-08 9.2E-13 88.5 0.3 86 314-405 73-158 (208)
117 4g8a_A TOLL-like receptor 4; l 98.4 8.9E-08 3E-12 100.1 4.1 56 192-247 53-111 (635)
118 1a9n_A U2A', U2A'; complex (nu 98.4 5.4E-08 1.9E-12 84.0 1.7 87 267-355 63-151 (176)
119 1dce_A Protein (RAB geranylger 98.4 3.7E-09 1.3E-13 108.7 -7.4 123 294-428 442-567 (567)
120 3cvr_A Invasion plasmid antige 98.4 1.2E-07 4.2E-12 97.1 3.7 191 191-416 59-250 (571)
121 2v9t_B SLIT homolog 2 protein 98.4 1.2E-07 4.1E-12 85.1 2.4 87 266-356 78-164 (220)
122 1a9n_A U2A', U2A'; complex (nu 98.3 1E-07 3.6E-12 82.2 1.7 108 268-380 42-150 (176)
123 1ds9_A Outer arm dynein; leuci 98.3 2.2E-08 7.5E-13 88.4 -2.9 129 288-427 43-180 (198)
124 1ds9_A Outer arm dynein; leuci 98.3 2.9E-07 9.8E-12 81.1 4.1 133 312-457 43-183 (198)
125 2o6s_A Variable lymphocyte rec 98.3 2.6E-07 9E-12 82.0 3.8 14 233-246 49-62 (208)
126 3e6j_A Variable lymphocyte rec 98.3 2.1E-07 7.3E-12 84.0 3.1 83 268-354 40-122 (229)
127 3cvr_A Invasion plasmid antige 98.3 1.3E-07 4.5E-12 96.8 1.4 185 212-436 57-244 (571)
128 2xot_A Amphoterin-induced prot 98.3 9.6E-08 3.3E-12 92.7 -0.4 159 235-406 38-200 (361)
129 2v70_A SLIT-2, SLIT homolog 2 98.3 2E-07 6.8E-12 83.7 1.6 108 292-405 56-163 (220)
130 3e6j_A Variable lymphocyte rec 98.2 5.1E-07 1.7E-11 81.5 3.6 129 214-355 40-170 (229)
131 2v9t_B SLIT homolog 2 protein 98.2 1.2E-07 4.1E-12 85.1 -0.8 84 268-355 32-115 (220)
132 2v70_A SLIT-2, SLIT homolog 2 98.2 3.6E-07 1.2E-11 81.9 2.2 87 266-356 79-165 (220)
133 3sb4_A Hypothetical leucine ri 98.2 4.4E-07 1.5E-11 86.8 2.7 124 293-427 202-327 (329)
134 2xot_A Amphoterin-induced prot 98.2 1.9E-07 6.6E-12 90.5 -0.4 160 213-386 38-205 (361)
135 3sb4_A Hypothetical leucine ri 98.1 3.6E-07 1.2E-11 87.4 -0.1 93 357-457 213-306 (329)
136 3l2o_B F-box only protein 4; s 98.1 6.4E-07 2.2E-11 81.4 0.5 48 68-115 4-53 (312)
137 1pgv_A TMD-1, tropomodulin TMD 98.0 5E-05 1.7E-09 65.8 12.3 119 309-430 33-166 (197)
138 1dce_A Protein (RAB geranylger 98.0 2.5E-06 8.6E-11 87.6 4.1 173 189-377 370-567 (567)
139 2e31_A FBS1, F-box only protei 97.8 6.3E-06 2.2E-10 75.9 2.7 46 67-112 49-97 (297)
140 4ay9_X Follicle-stimulating ho 97.8 4.1E-07 1.4E-11 87.8 -6.7 223 213-456 29-254 (350)
141 2o6r_A Variable lymphocyte rec 97.7 1.3E-05 4.5E-10 68.8 2.6 86 314-405 49-134 (177)
142 1w8a_A SLIT protein; signaling 97.7 5.4E-06 1.9E-10 72.4 -0.5 60 293-355 78-137 (192)
143 2wfh_A SLIT homolog 2 protein 97.6 1.8E-05 6.3E-10 69.1 2.3 62 292-356 77-138 (193)
144 2o6r_A Variable lymphocyte rec 97.6 3.6E-05 1.2E-09 66.1 3.7 87 267-357 51-137 (177)
145 3v7d_B Cell division control p 97.6 1.2E-05 3.9E-10 80.4 0.6 49 65-113 11-62 (464)
146 4b8c_D Glucose-repressible alc 97.6 1.1E-05 3.6E-10 85.6 -0.2 84 266-356 245-328 (727)
147 2wfh_A SLIT homolog 2 protein 97.5 3.9E-05 1.3E-09 67.0 3.3 39 313-354 50-88 (193)
148 1pgv_A TMD-1, tropomodulin TMD 97.5 0.0018 6E-08 56.0 13.6 91 313-405 66-167 (197)
149 1p22_A F-BOX/WD-repeat protein 97.4 2.1E-05 7.1E-10 78.0 0.2 50 64-113 6-61 (435)
150 1w8a_A SLIT protein; signaling 97.4 2.5E-05 8.5E-10 68.1 0.2 37 292-328 101-137 (192)
151 2ovr_B FBW7, F-BOX/WD repeat p 97.4 5.6E-05 1.9E-09 75.0 2.5 48 65-112 15-64 (445)
152 4b8c_D Glucose-repressible alc 97.3 3.8E-05 1.3E-09 81.4 -0.1 109 189-308 222-331 (727)
153 3rw6_A Nuclear RNA export fact 96.8 0.00092 3.1E-08 61.1 4.8 39 315-354 168-206 (267)
154 4fdw_A Leucine rich hypothetic 96.6 0.00016 5.6E-09 70.7 -2.0 188 215-431 158-355 (401)
155 3rw6_A Nuclear RNA export fact 96.6 0.003 1E-07 57.6 6.2 31 269-299 221-257 (267)
156 4fdw_A Leucine rich hypothetic 96.5 0.00021 7.2E-09 69.9 -2.1 191 192-405 158-355 (401)
157 2r9u_A Variable lymphocyte rec 96.5 0.0011 3.8E-08 56.5 2.6 39 314-355 78-116 (174)
158 2r9u_A Variable lymphocyte rec 96.5 0.0012 4.2E-08 56.2 2.7 15 391-405 101-115 (174)
159 3g39_A Variable lymphocyte rec 96.4 0.0013 4.4E-08 55.8 2.7 13 393-405 100-112 (170)
160 3g39_A Variable lymphocyte rec 96.4 0.0012 4.3E-08 55.9 2.6 40 313-355 74-113 (170)
161 2ifg_A High affinity nerve gro 95.3 0.0064 2.2E-07 58.0 2.3 59 293-355 56-114 (347)
162 2ifg_A High affinity nerve gro 95.1 0.0081 2.8E-07 57.2 2.5 87 290-382 28-115 (347)
163 4fs7_A Uncharacterized protein 94.1 0.003 1E-07 61.5 -3.4 232 188-454 159-394 (394)
164 4fs7_A Uncharacterized protein 90.8 0.037 1.3E-06 53.7 -0.5 165 189-379 206-375 (394)
165 4gt6_A Cell surface protein; l 89.3 0.067 2.3E-06 51.8 -0.2 123 210-353 261-387 (394)
166 4h09_A Hypothetical leucine ri 85.8 0.1 3.6E-06 50.1 -1.1 145 213-379 193-342 (379)
167 4gt6_A Cell surface protein; l 82.9 0.35 1.2E-05 46.6 1.2 123 188-326 262-387 (394)
168 4h09_A Hypothetical leucine ri 76.9 0.28 9.7E-06 47.0 -1.7 127 211-353 214-342 (379)
169 3rfe_A Platelet glycoprotein I 41.5 9.7 0.00033 29.9 1.4 37 318-357 32-68 (130)
170 3rfe_A Platelet glycoprotein I 35.8 26 0.0009 27.3 3.2 16 266-281 53-68 (130)
171 2lz0_A Uncharacterized protein 24.5 36 0.0012 25.1 2.0 32 213-244 19-51 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=4.3e-33 Score=291.49 Aligned_cols=386 Identities=21% Similarity=0.248 Sum_probs=269.7
Q ss_pred CccCCCCcHHHHHHHhccCC-cccchhhhhhhHHHHHHHhhhhcccccccccccccchhhhcCCCceEEEeecccccccC
Q 011541 66 IDRTLLLSDDILLRILSKLP-VSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRM 144 (483)
Q Consensus 66 ~d~~~~LP~ell~~I~~~L~-~~~~~~~~lVck~W~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~ 144 (483)
.|.|++||+|++.+||+||+ .+|+.++++|||+|+.+....|+++++..+.......++.++++++.+++.+.......
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 47899999999999999999 78999999999999999888899999888777777888999999999999875432211
Q ss_pred C-----ccc----c------ccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCC---ChHHH
Q 011541 145 G-----AGV----F------WSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGA---SEFGL 206 (483)
Q Consensus 145 ~-----~~~----~------~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~l 206 (483)
. +.. + ....+..+++. ...+++..+..+.+.+++|++|++.++ +..++
T Consensus 83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~--------------~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 148 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK--------------RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE--------------SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHH
T ss_pred ccccccccchhhHHHHHHHHhCCCCCeEEee--------------CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHH
Confidence 1 100 1 11133344433 356888888888888999999999976 45668
Q ss_pred HHHHHhCCCCCEEEeecCC--ccchHHh----hcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC
Q 011541 207 LSVAEECLTLQEFELHKCG--DNVLRGI----AACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG 280 (483)
Q Consensus 207 ~~~~~~~~~L~~L~l~~~~--~~~~~~i----~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 280 (483)
..+...|++|++|++++|. +.....+ ..+++|++|++.++.. .+++..+..+...+++|++|++++|..
T Consensus 149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS-----EVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCS-----CCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCC-----cCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 8888899999999999884 2222223 2678999999998741 367788888888899999999999853
Q ss_pred ChHHHHHHHHcCcCCCeeeecccc------------------------------CcHHHHHHhhcCCCCcEEEeccCCCC
Q 011541 281 SFDGIKAIGQCCQMLEELTFSDHR------------------------------MDDGWLAALSYCENLKTLRFVSCKKI 330 (483)
Q Consensus 281 ~~~~l~~l~~~~~~L~~L~l~~~~------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~ 330 (483)
.. .+..+...+++|++|.+..+. ....+...+..+++|++|++.+|. +
T Consensus 224 ~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l 301 (594)
T 2p1m_B 224 LE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-V 301 (594)
T ss_dssp HH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-C
T ss_pred HH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-C
Confidence 33 366667777888888754432 111122222356788888888777 5
Q ss_pred CCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEc--------cCCCCCCHHHHH-HHhcCCCCcEEE
Q 011541 331 DPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVF--------QDCWGLDDDIFR-FADVFRRAKFLS 401 (483)
Q Consensus 331 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L--------~~~~~~~d~~~~-~~~~~~~L~~L~ 401 (483)
++ ..+..++..+++|++|++.+| +++.++..+...|++|++|++ ..+..+++.... +...+++|+.|.
T Consensus 302 ~~-~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 302 QS-YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CH-HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CH-HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 53 234555678888888888877 567778888777888888888 345566666554 445688888886
Q ss_pred ecCCCCCCHHHHHHHHhcCcccceeeee-----cCCCCC----ccchHHHHhhhcccCcEEEeecC------------Cc
Q 011541 402 LEGCSLVTTEGLESVILSWTDLQSLRVV-----SCKNIK----DGEVSPALSTLFSVLKELKWRPD------------TK 460 (483)
Q Consensus 402 l~~~~~lt~~~l~~l~~~~~~L~~L~l~-----~c~~i~----~~~v~~~l~~~~~~L~~L~~~~~------------~~ 460 (483)
+.++ .+++.++..+...+++|+.|++. +|..++ +.++. .+...|++|++|.+... .+
T Consensus 379 ~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 379 YFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG-AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH-HHHHHCTTCCEEECCSSCCHHHHHHHHHHCT
T ss_pred HhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH-HHHhhCCCccEEeecCcccHHHHHHHHHhch
Confidence 6544 78888888887778888888888 677777 33443 33455677777777431 23
Q ss_pred ccccccccccccccccc
Q 011541 461 SLLASSLAGTGMGKRGG 477 (483)
Q Consensus 461 ~~~~~~~~~~~~~~~g~ 477 (483)
.+-..+|++..+++.|.
T Consensus 457 ~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp TCCEEEEESCCSSHHHH
T ss_pred hccEeeccCCCCcHHHH
Confidence 34445555555555444
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.1e-31 Score=280.82 Aligned_cols=383 Identities=19% Similarity=0.193 Sum_probs=195.8
Q ss_pred CCCcHHHHHHHhccC-CcccchhhhhhhHHHHHHHhhhhcccccccccccccchhhhcCCCceEEEeeccccccc-----
Q 011541 70 LLLSDDILLRILSKL-PVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRR----- 143 (483)
Q Consensus 70 ~~LP~ell~~I~~~L-~~~~~~~~~lVck~W~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~----- 143 (483)
.+||||++.+||+|| +.+|+.++++|||+|+.+....++.+.+.......+..+..+++++++|++++......
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 479999999999999 78899999999999999977667777766554455677888999999999976432211
Q ss_pred CCccc----c------ccccceeeeecCCCc---------ccc---cccCCCCCc-ccchHHHHHHHhcCCCccEEEEcC
Q 011541 144 MGAGV----F------WSHRLVSLHIDSCFS---------RFC---DDEGMLLPV-EIIDRGLKALACGCPNLRRLVVVG 200 (483)
Q Consensus 144 ~~~~~----~------~~~~~~~l~l~~~~~---------~~~---~~~~~l~~~-~~~~~~l~~l~~~~~~L~~L~l~~ 200 (483)
..+.. + ....+..+++..+.. ..+ -+.+++... .+++..+..+...|++|++|++.+
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 11110 0 112344555543211 000 011222211 244555666666666777766665
Q ss_pred CC-----hHHHHHHHHhCCCCCEEEeecCCcc-----c-hHHhhcCCCCCEEEeecCCCCc------------------c
Q 011541 201 AS-----EFGLLSVAEECLTLQEFELHKCGDN-----V-LRGIAACENLQILKLVGNVEGF------------------Y 251 (483)
Q Consensus 201 ~~-----~~~l~~~~~~~~~L~~L~l~~~~~~-----~-~~~i~~~~~L~~L~L~~~~~~~------------------~ 251 (483)
+. ...+..+...+++|++|+++.+.-. . ...+..+++|++|++.+|...- +
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBC
T ss_pred ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccc
Confidence 42 0113333334444444444332110 1 1112244555555554432000 0
Q ss_pred c-----------------------cccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHH
Q 011541 252 N-----------------------STVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDG 308 (483)
Q Consensus 252 ~-----------------------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 308 (483)
. .......+..+...+++|++|++++|......+..+...+++|++|++.++..+..
T Consensus 254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 333 (592)
T 3ogk_B 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333 (592)
T ss_dssp CCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred ccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence 0 00111122223334556666666666533334545555566666666664444444
Q ss_pred HHHHhhcCCCCcEEEecc----------CCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEcc
Q 011541 309 WLAALSYCENLKTLRFVS----------CKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQ 378 (483)
Q Consensus 309 ~~~~l~~~~~L~~L~l~~----------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~ 378 (483)
.......+++|++|++.+ |..+++. ++..+...|++|++|++ +|..+++.++..+...|++|++|++.
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-GLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-HHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHH-HHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 444445566666666663 4444421 23333444556666655 23344555555555545555555553
Q ss_pred ---------------------------------CCC-CCCHHHHH-HHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccc
Q 011541 379 ---------------------------------DCW-GLDDDIFR-FADVFRRAKFLSLEGCSLVTTEGLESVILSWTDL 423 (483)
Q Consensus 379 ---------------------------------~~~-~~~d~~~~-~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L 423 (483)
+|. .+++..+. +...+++|+.|+|++| .+++.++..++..|++|
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNL 490 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCccc
Confidence 332 13333333 2233555555555555 45555555555555555
Q ss_pred ceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 424 QSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 424 ~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+.|+|++|. +++.++. .+...+++|++|.+..
T Consensus 491 ~~L~l~~n~-l~~~~~~-~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 491 QKLEMRGCC-FSERAIA-AAVTKLPSLRYLWVQG 522 (592)
T ss_dssp CEEEEESCC-CBHHHHH-HHHHHCSSCCEEEEES
T ss_pred CeeeccCCC-CcHHHHH-HHHHhcCccCeeECcC
Confidence 555555555 4444333 2223455555555553
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=6.8e-28 Score=233.74 Aligned_cols=287 Identities=21% Similarity=0.243 Sum_probs=190.4
Q ss_pred ccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHHH--hhhhcccccccccccccchhhhcCCCceEEEeecccccccC
Q 011541 67 DRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQ--GRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRM 144 (483)
Q Consensus 67 d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~--~~l~~~l~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~ 144 (483)
..|.+||+|++.+||+||+.+|+.++++|||+|+.+. +.+|+++++...
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~----------------------------- 57 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK----------------------------- 57 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-----------------------------
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-----------------------------
Confidence 4589999999999999999999999999999999884 445554443211
Q ss_pred CccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecC
Q 011541 145 GAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKC 224 (483)
Q Consensus 145 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 224 (483)
.+.+..+..+. .++++.|++.+..-
T Consensus 58 --------------------------------~~~~~~~~~~~--~~~l~~L~l~~n~l--------------------- 82 (336)
T 2ast_B 58 --------------------------------NLHPDVTGRLL--SQGVIAFRCPRSFM--------------------- 82 (336)
T ss_dssp --------------------------------BCCHHHHHHHH--HTTCSEEECTTCEE---------------------
T ss_pred --------------------------------cCCHHHHHhhh--hccceEEEcCCccc---------------------
Confidence 11122121111 13455554443210
Q ss_pred CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccc-
Q 011541 225 GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDH- 303 (483)
Q Consensus 225 ~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~- 303 (483)
.. ....+..+++|++|++++|. +++.++......+++|++|++++|.........+.. +++|++|+++++
T Consensus 83 ~~-~~~~~~~~~~L~~L~L~~~~-------l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~ 153 (336)
T 2ast_B 83 DQ-PLAEHFSPFRVQHMDLSNSV-------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCS 153 (336)
T ss_dssp CS-CCCSCCCCBCCCEEECTTCE-------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCB
T ss_pred cc-cchhhccCCCCCEEEccCCC-------cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCC
Confidence 00 01113456677777776664 666666666667777777777777644444444443 677777777777
Q ss_pred cCcH-HHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCC-CccEEeccccc-cccHHHHHHHHhcCccccEEEccCC
Q 011541 304 RMDD-GWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCL-ALERLHLQKCQ-LRDKKGVRALFRVCEAVRELVFQDC 380 (483)
Q Consensus 304 ~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~ 380 (483)
.+.+ .+...+..+++|++|++.+|..+++. ++...+..++ +|++|++++|. .+++.++......+++|++|++++|
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 4544 35555677888888888887445531 3455667788 88888888876 5666777777777888888888888
Q ss_pred CCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCc
Q 011541 381 WGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLK 451 (483)
Q Consensus 381 ~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~ 451 (483)
..+++.....+..+++|+.|++++|..+++.++..+ ..+++|+.|++++| +++..+. .+...+++|+
T Consensus 233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~--i~~~~~~-~l~~~l~~L~ 299 (336)
T 2ast_B 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPDGTLQ-LLKEALPHLQ 299 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCTTCHH-HHHHHSTTSE
T ss_pred CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc--cCHHHHH-HHHhhCcceE
Confidence 657777666677788888888888877777766544 35888888888887 7766665 3333344444
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=2.1e-21 Score=202.70 Aligned_cols=328 Identities=19% Similarity=0.233 Sum_probs=221.3
Q ss_pred hccccccccccc---ccchhhhcCCCceEEEeecccccccCC--cccc--ccccceeeeecCCCcccccccCCCCCcccc
Q 011541 107 VRSLKVLDWEFL---ESGRLISRFPNLSNVDLVVGCFVRRMG--AGVF--WSHRLVSLHIDSCFSRFCDDEGMLLPVEII 179 (483)
Q Consensus 107 ~~~l~~~~~~~~---~~~~l~~~~~~L~~l~l~~~~~~~~~~--~~~~--~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~ 179 (483)
.+.+++..+... ....+...+++|+.|+++++....... +... ....+..+++..+. ...+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-----------~~~~~ 208 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-----------FAKIS 208 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-----------CSSCC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-----------CCccC
Confidence 455555443321 223445578888888887654321110 0001 11233344443210 01133
Q ss_pred hHHHHHHHhcCCCccEEEEcCCChHHHHHHHHhCCCCCEEEe--------------------------------------
Q 011541 180 DRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFEL-------------------------------------- 221 (483)
Q Consensus 180 ~~~l~~l~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l-------------------------------------- 221 (483)
...+..+...+++|++|++.++...++......+++|++|++
T Consensus 209 ~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 288 (592)
T 3ogk_B 209 PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288 (592)
T ss_dssp HHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred HHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence 556666667788888888877654444444444455555444
Q ss_pred ------------ecCC--ccch-HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeC---------
Q 011541 222 ------------HKCG--DNVL-RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSG--------- 277 (483)
Q Consensus 222 ------------~~~~--~~~~-~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~--------- 277 (483)
++|. +... ..+..+++|+.|.+.. .+.+.++..+...|++|++|++.+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--------~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--------VIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--------GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--------ccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 4432 0111 1234556666666652 266777777778889999999994
Q ss_pred -CCCChH-HHHHHHHcCcCCCeeeeccccCcHHHHHHhh-cCCCCcEEEecc---CCCCCCC---CChHHHhcCCCCccE
Q 011541 278 -CEGSFD-GIKAIGQCCQMLEELTFSDHRMDDGWLAALS-YCENLKTLRFVS---CKKIDPS---PGPDEYLGSCLALER 348 (483)
Q Consensus 278 -~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~---~~~~~~~---~~l~~~~~~~~~L~~ 348 (483)
|....+ ++..+...+++|++|++..+.+.+.....+. .+++|++|++.+ |..+++. .++...+..+++|++
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 555544 7888888899999999977777766666665 499999999974 4456542 135556778999999
Q ss_pred Eeccccc-cccHHHHHHHHhcCccccEEEccCCCCCCHH-HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccccee
Q 011541 349 LHLQKCQ-LRDKKGVRALFRVCEAVRELVFQDCWGLDDD-IFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSL 426 (483)
Q Consensus 349 L~L~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~-~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L 426 (483)
|++++|. .+++.++..+...+++|+.|++++| .+++. ....+..+++|++|+|++| .+++.++..++..+++|+.|
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEE
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCee
Confidence 9998765 4788899999999999999999998 46664 4557789999999999999 59999999998899999999
Q ss_pred eeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 427 RVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 427 ~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+|++|. +++.++. .+...+|.+....+..
T Consensus 519 ~ls~n~-it~~~~~-~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 519 WVQGYR-ASMTGQD-LMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCB-CCTTCTT-GGGGCCTTEEEEEECC
T ss_pred ECcCCc-CCHHHHH-HHHHhCCCcEEEEecC
Confidence 999998 8888776 5556678777666653
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=8.9e-21 Score=198.01 Aligned_cols=265 Identities=20% Similarity=0.219 Sum_probs=131.3
Q ss_pred ccchHHHHHHHhcCCCccEEEEcCC-ChHHHHHHHHhCCCCCEEEeecCCc-----------------------------
Q 011541 177 EIIDRGLKALACGCPNLRRLVVVGA-SEFGLLSVAEECLTLQEFELHKCGD----------------------------- 226 (483)
Q Consensus 177 ~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~----------------------------- 226 (483)
.+++..+..+...+++|++|++.++ ...++..+...+++|++|++..+..
T Consensus 197 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~ 276 (594)
T 2p1m_B 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC
T ss_pred cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc
Confidence 3666778887778899999999876 4445666666677777776443310
Q ss_pred --cchH-HhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeee---
Q 011541 227 --NVLR-GIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTF--- 300 (483)
Q Consensus 227 --~~~~-~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l--- 300 (483)
.... .+..+++|++|++++|. +++.++..+...+++|++|++.+| ....++..+...+++|++|++
T Consensus 277 ~~~~l~~~~~~~~~L~~L~L~~~~-------l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 277 VPAYLPAVYSVCSRLTTLNLSYAT-------VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp CGGGGGGGHHHHTTCCEEECTTCC-------CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECS
T ss_pred chhhHHHHHHhhCCCCEEEccCCC-------CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecC
Confidence 0011 11145566666666554 445545444445555555555554 222244444444555555555
Q ss_pred -------------------------------ccccCcHHHHHHhh-cCCCCcEEEec-----cCCCCCCC---CChHHHh
Q 011541 301 -------------------------------SDHRMDDGWLAALS-YCENLKTLRFV-----SCKKIDPS---PGPDEYL 340 (483)
Q Consensus 301 -------------------------------~~~~~~~~~~~~l~-~~~~L~~L~l~-----~~~~~~~~---~~l~~~~ 340 (483)
..+.+.+.....+. .+++|++|++. +|..+++. .++..++
T Consensus 349 ~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp CTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 33333332222222 34555555554 33333321 1222334
Q ss_pred cCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHH-HHhcCCCCcEEEecCCCCCCHHHHHHHHhc
Q 011541 341 GSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFR-FADVFRRAKFLSLEGCSLVTTEGLESVILS 419 (483)
Q Consensus 341 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~-~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~ 419 (483)
..+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.... ++..+++|+.|+|++| .+++.++..++..
T Consensus 429 ~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 429 EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASK 504 (594)
T ss_dssp HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGG
T ss_pred hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHh
Confidence 4455555555543 34444555554445555555555552 3333322 2244555555555555 3455555554545
Q ss_pred CcccceeeeecCCCCCccchHHHHhhhcccCcEEEe
Q 011541 420 WTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKW 455 (483)
Q Consensus 420 ~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~ 455 (483)
+++|+.|++++|+ +++.++. .+...+|+|+...+
T Consensus 505 l~~L~~L~l~~~~-~~~~~~~-~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 505 LETMRSLWMSSCS-VSFGACK-LLGQKMPKLNVEVI 538 (594)
T ss_dssp GGGSSEEEEESSC-CBHHHHH-HHHHHCTTEEEEEE
T ss_pred CCCCCEEeeeCCC-CCHHHHH-HHHHhCCCCEEEEe
Confidence 5555555555554 3333333 23333455444333
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=6e-19 Score=178.30 Aligned_cols=254 Identities=21% Similarity=0.282 Sum_probs=127.8
Q ss_pred cCCCccEEEEcCCC--hHHHHHHHHh----CCCCCEEEeecCC--ccc----hHHhhcCCCCCEEEeecCCCCccccccC
Q 011541 189 GCPNLRRLVVVGAS--EFGLLSVAEE----CLTLQEFELHKCG--DNV----LRGIAACENLQILKLVGNVEGFYNSTVS 256 (483)
Q Consensus 189 ~~~~L~~L~l~~~~--~~~l~~~~~~----~~~L~~L~l~~~~--~~~----~~~i~~~~~L~~L~L~~~~~~~~~~~~~ 256 (483)
.+++|++|+++++. ..+...+... .++|++|++++|. ... ...+..+++|++|+++++. ++
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-------i~ 183 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-------IN 183 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-------CH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-------cc
Confidence 45666666666542 2233333322 3456666666653 111 2334456666666666664 55
Q ss_pred hHHHHHHHh----cCCCCcEEEeeCCCCChHH---HHHHHHcCcCCCeeeeccccCcHHHHHHh-----hcCCCCcEEEe
Q 011541 257 DIGLTILAQ----GCKRLVKLELSGCEGSFDG---IKAIGQCCQMLEELTFSDHRMDDGWLAAL-----SYCENLKTLRF 324 (483)
Q Consensus 257 ~~~l~~l~~----~~~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l 324 (483)
+.+...+.. ..++|++|++++|.....+ +......+++|++|+++++.+.+.....+ ..+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 555444433 2346666666666554433 23333345666666666665544332222 13566666666
Q ss_pred ccCCCCCCCCC---hHHHhcCCCCccEEeccccccccHHHHHHHHhc----CccccEEEccCCCCCCHH----HHHHHhc
Q 011541 325 VSCKKIDPSPG---PDEYLGSCLALERLHLQKCQLRDKKGVRALFRV----CEAVRELVFQDCWGLDDD----IFRFADV 393 (483)
Q Consensus 325 ~~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~----~~~L~~L~L~~~~~~~d~----~~~~~~~ 393 (483)
.+|. +++. + +...+..+++|++|+++++. +++.+...+... .++|++|++.+|. +++. ....+..
T Consensus 264 ~~n~-l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 264 WECG-ITAK-GCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQ 339 (461)
T ss_dssp TTSC-CCHH-HHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred cCCC-CCHH-HHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhh
Confidence 6653 3321 1 23334446666666666653 444444444332 2466666666663 3322 2223445
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhc----CcccceeeeecCCCCCccch---HHHHhhhcccCcEEEee
Q 011541 394 FRRAKFLSLEGCSLVTTEGLESVILS----WTDLQSLRVVSCKNIKDGEV---SPALSTLFSVLKELKWR 456 (483)
Q Consensus 394 ~~~L~~L~l~~~~~lt~~~l~~l~~~----~~~L~~L~l~~c~~i~~~~v---~~~l~~~~~~L~~L~~~ 456 (483)
+++|+.|+++++ .+++.+...+... .++|+.|++++|. +++.++ ...+ ..+++|++|.+.
T Consensus 340 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l-~~~~~L~~L~l~ 406 (461)
T 1z7x_W 340 NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATL-LANHSLRELDLS 406 (461)
T ss_dssp CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH-HHCCCCCEEECC
T ss_pred CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHH-HhCCCccEEECC
Confidence 566666666665 5665555544432 3466666666653 544322 2122 224566665554
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=2.5e-18 Score=173.79 Aligned_cols=332 Identities=20% Similarity=0.175 Sum_probs=184.0
Q ss_pred hhhhcCCCceEEEeecccccccC--Ccccccc--ccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCC----Cc
Q 011541 122 RLISRFPNLSNVDLVVGCFVRRM--GAGVFWS--HRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCP----NL 193 (483)
Q Consensus 122 ~l~~~~~~L~~l~l~~~~~~~~~--~~~~~~~--~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~----~L 193 (483)
.++..+++++.++++++...... .+...+. ..+..+++ ....+++.....+...++ +|
T Consensus 22 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L--------------s~n~l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL--------------RSNELGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC--------------TTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC--------------CCCcCChHHHHHHHHHHhhCCCce
Confidence 44667888999998864432110 0111111 12333333 334566666666666555 57
Q ss_pred cEEEEcCCC--hH---HHHHHHHhCCCCCEEEeecCCc--cchHHhh-----cCCCCCEEEeecCCCCccccccChHHHH
Q 011541 194 RRLVVVGAS--EF---GLLSVAEECLTLQEFELHKCGD--NVLRGIA-----ACENLQILKLVGNVEGFYNSTVSDIGLT 261 (483)
Q Consensus 194 ~~L~l~~~~--~~---~l~~~~~~~~~L~~L~l~~~~~--~~~~~i~-----~~~~L~~L~L~~~~~~~~~~~~~~~~l~ 261 (483)
++|+++++. .. .+......+++|++|+++++.- .....+. ..++|++|++++|. +++.+..
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-------l~~~~~~ 160 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-------LSAASCE 160 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-------CBGGGHH
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-------CCHHHHH
Confidence 777777652 22 3344445677777777776631 1122222 24567777777765 5554332
Q ss_pred ---HHHhcCCCCcEEEeeCCCCChHHHHHHHH----cCcCCCeeeeccccCcHH----HHHHhhcCCCCcEEEeccCCCC
Q 011541 262 ---ILAQGCKRLVKLELSGCEGSFDGIKAIGQ----CCQMLEELTFSDHRMDDG----WLAALSYCENLKTLRFVSCKKI 330 (483)
Q Consensus 262 ---~l~~~~~~L~~L~L~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~ 330 (483)
.....+++|++|+++++.....+...+.. ..++|++|+++++.+.+. +...+..+++|++|++.++. +
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-L 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-C
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-C
Confidence 22344677777777777654444444443 344777777777765543 34455567777777777664 3
Q ss_pred CCCCChHH----HhcCCCCccEEeccccccccHHHHH---HHHhcCccccEEEccCCCCCCHHHHHHHh-----cCCCCc
Q 011541 331 DPSPGPDE----YLGSCLALERLHLQKCQLRDKKGVR---ALFRVCEAVRELVFQDCWGLDDDIFRFAD-----VFRRAK 398 (483)
Q Consensus 331 ~~~~~l~~----~~~~~~~L~~L~L~~~~~~~~~~l~---~l~~~~~~L~~L~L~~~~~~~d~~~~~~~-----~~~~L~ 398 (483)
++. ++.. ....+++|++|++++| .+++.++. .....+++|++|+++++ .+++.....+. ..++|+
T Consensus 240 ~~~-~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 240 GDV-GMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp HHH-HHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCC
T ss_pred ChH-HHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccce
Confidence 321 1111 2224677777777776 35554433 23334777777777777 44444332221 235777
Q ss_pred EEEecCCCCCCHHHHH---HHHhcCcccceeeeecCCCCCccchHH---HHhhhcccCcEEEeecCC-------------
Q 011541 399 FLSLEGCSLVTTEGLE---SVILSWTDLQSLRVVSCKNIKDGEVSP---ALSTLFSVLKELKWRPDT------------- 459 (483)
Q Consensus 399 ~L~l~~~~~lt~~~l~---~l~~~~~~L~~L~l~~c~~i~~~~v~~---~l~~~~~~L~~L~~~~~~------------- 459 (483)
.|++++| .+++.+.. ..+..+++|+.|++++|. +++.++.. .+...+++|++|.+....
T Consensus 317 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp EEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred eeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 8888777 56655433 334456788888888764 66554431 111124678888877421
Q ss_pred ---ccccccccccccccccccccc
Q 011541 460 ---KSLLASSLAGTGMGKRGGKFF 480 (483)
Q Consensus 460 ---~~~~~~~~~~~~~~~~g~~~~ 480 (483)
+.+-..+++++.+++.|...|
T Consensus 395 ~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp HHCCCCCEEECCSSSCCHHHHHHH
T ss_pred HhCCCccEEECCCCCCCHHHHHHH
Confidence 234445666666666665443
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=7.4e-18 Score=162.93 Aligned_cols=232 Identities=16% Similarity=0.189 Sum_probs=182.8
Q ss_pred CCCCCEEEeecCCccchHHhhcC--CCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 213 CLTLQEFELHKCGDNVLRGIAAC--ENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~i~~~--~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
...++.++++.+... ...+..+ ++++.|++.++. +.+.... ...+++|++|++++|.....++..+..
T Consensus 46 ~~~~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~-------l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSF-------MDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp STTSSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCE-------ECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred chhheeeccccccCC-HHHHHhhhhccceEEEcCCcc-------ccccchh--hccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 345788888765322 3445555 889999998764 3222111 235799999999999865556888888
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCc
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCE 370 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 370 (483)
.+++|++|+++++.+.+.....++.+++|++|++.+|..+++. ++...+..+++|++|++++|..+++.++......++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 8999999999999988888888999999999999999656632 356668889999999999996788777888888899
Q ss_pred -cccEEEccCCC-CCCHH-HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhc
Q 011541 371 -AVRELVFQDCW-GLDDD-IFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLF 447 (483)
Q Consensus 371 -~L~~L~L~~~~-~~~d~-~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~ 447 (483)
+|++|++++|. .+++. ....+..+++|+.|++++|..+++.++..+ ..+++|+.|++++|..+.+.++. .+ ..+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~l-~~~ 271 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLL-EL-GEI 271 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGG-GG-GGC
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHH-HH-hcC
Confidence 99999999996 56644 455778899999999999955888777765 47899999999999878777653 33 348
Q ss_pred ccCcEEEeecC
Q 011541 448 SVLKELKWRPD 458 (483)
Q Consensus 448 ~~L~~L~~~~~ 458 (483)
++|++|.+.+.
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 99999999753
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.5e-16 Score=155.27 Aligned_cols=267 Identities=16% Similarity=0.143 Sum_probs=187.7
Q ss_pred ccchHHHHHHH---hcCCCccEEEEcCC--ChHHHHHH---HHhCCCCCEEEeecCCc-----cchHH-------hhcCC
Q 011541 177 EIIDRGLKALA---CGCPNLRRLVVVGA--SEFGLLSV---AEECLTLQEFELHKCGD-----NVLRG-------IAACE 236 (483)
Q Consensus 177 ~~~~~~l~~l~---~~~~~L~~L~l~~~--~~~~l~~~---~~~~~~L~~L~l~~~~~-----~~~~~-------i~~~~ 236 (483)
.+++.++..+. ..+++|++|+++++ +..+...+ ...+++|++|++++|.. ..+.+ +..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 45555554433 36799999999986 44444443 44789999999998731 11222 36899
Q ss_pred CCCEEEeecCCCCccccccChHHH---HHHHhcCCCCcEEEeeCCCCChHHHHHHHH---cC---------cCCCeeeec
Q 011541 237 NLQILKLVGNVEGFYNSTVSDIGL---TILAQGCKRLVKLELSGCEGSFDGIKAIGQ---CC---------QMLEELTFS 301 (483)
Q Consensus 237 ~L~~L~L~~~~~~~~~~~~~~~~l---~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~---~~---------~~L~~L~l~ 301 (483)
+|++|+|+++. +++.+. ......+++|++|+|++|.....+...+.. .+ ++|++|+++
T Consensus 95 ~L~~L~Ls~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 95 KLHTVRLSDNA-------FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TCCEEECCSCC-------CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred cccEEECCCCc-------CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 99999999986 666433 333466899999999999875444333333 33 899999999
Q ss_pred cccCc-HHHH---HHhhcCCCCcEEEeccCCCCCCCCCh---HH-HhcCCCCccEEeccccccccHHHH---HHHHhcCc
Q 011541 302 DHRMD-DGWL---AALSYCENLKTLRFVSCKKIDPSPGP---DE-YLGSCLALERLHLQKCQLRDKKGV---RALFRVCE 370 (483)
Q Consensus 302 ~~~~~-~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~l---~~-~~~~~~~L~~L~L~~~~~~~~~~l---~~l~~~~~ 370 (483)
++.+. .... ..+..+++|++|++.+|. +++. ++ .. .+..+++|+.|+|++|. +++.+. ......++
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~-g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPE-GIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWP 244 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHH-HHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCT
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHh-HHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCC
Confidence 99876 3333 466789999999999885 4421 21 22 45678999999999986 554443 33446689
Q ss_pred cccEEEccCCCCCCHHHH----HHHh--cCCCCcEEEecCCCCCCHHHHHHHH----hcCcccceeeeecCCCCCccc-h
Q 011541 371 AVRELVFQDCWGLDDDIF----RFAD--VFRRAKFLSLEGCSLVTTEGLESVI----LSWTDLQSLRVVSCKNIKDGE-V 439 (483)
Q Consensus 371 ~L~~L~L~~~~~~~d~~~----~~~~--~~~~L~~L~l~~~~~lt~~~l~~l~----~~~~~L~~L~l~~c~~i~~~~-v 439 (483)
+|++|+|++| .+++... ..+. .+++|+.|+|++| .+++.++..+. .++++|+.|++++|. ++... .
T Consensus 245 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~ 321 (386)
T 2ca6_A 245 NLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDV 321 (386)
T ss_dssp TCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHH
T ss_pred CcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhH
Confidence 9999999999 4655522 2333 3899999999999 89987555443 457999999999987 65554 2
Q ss_pred HHHHhhhcccCcEEEee
Q 011541 440 SPALSTLFSVLKELKWR 456 (483)
Q Consensus 440 ~~~l~~~~~~L~~L~~~ 456 (483)
...+...++.++.+.+.
T Consensus 322 ~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 322 VDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHhhhcCcchhh
Confidence 44677777887755554
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.7e-16 Score=154.99 Aligned_cols=243 Identities=16% Similarity=0.160 Sum_probs=173.6
Q ss_pred ccchHHHHHHHh---cCCCccEEEEcCCC--------hHHH---HHHHHhCCCCCEEEeecCC--c----cchHHhhcCC
Q 011541 177 EIIDRGLKALAC---GCPNLRRLVVVGAS--------EFGL---LSVAEECLTLQEFELHKCG--D----NVLRGIAACE 236 (483)
Q Consensus 177 ~~~~~~l~~l~~---~~~~L~~L~l~~~~--------~~~l---~~~~~~~~~L~~L~l~~~~--~----~~~~~i~~~~ 236 (483)
.+++.....++. .+++|++|+++++. ..++ ......+++|++|+++++. . .....+..++
T Consensus 43 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 122 (386)
T 2ca6_A 43 TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122 (386)
T ss_dssp EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCC
Confidence 445555555443 57899999998752 1233 2334578999999999884 2 1234677899
Q ss_pred CCCEEEeecCCCCccccccChHHHHHHHh---cC---------CCCcEEEeeCCCCChHHHH---HHHHcCcCCCeeeec
Q 011541 237 NLQILKLVGNVEGFYNSTVSDIGLTILAQ---GC---------KRLVKLELSGCEGSFDGIK---AIGQCCQMLEELTFS 301 (483)
Q Consensus 237 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~---~~---------~~L~~L~L~~~~~~~~~l~---~l~~~~~~L~~L~l~ 301 (483)
+|++|+|++|. +++.+...+.. .+ ++|++|++++|.....++. .....+++|+.|+++
T Consensus 123 ~L~~L~L~~n~-------l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 123 PLEHLYLHNNG-------LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp TCCEEECCSSC-------CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred CCCEEECcCCC-------CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 99999999996 66655544443 23 8999999999987655554 344578999999999
Q ss_pred cccCcHH----HHH-HhhcCCCCcEEEeccCCCCCCC--CChHHHhcCCCCccEEeccccccccHHHHHHHHhc-----C
Q 011541 302 DHRMDDG----WLA-ALSYCENLKTLRFVSCKKIDPS--PGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRV-----C 369 (483)
Q Consensus 302 ~~~~~~~----~~~-~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~-----~ 369 (483)
++.+.+. ... .+..+++|++|+|+++. +++. ..+...+..+++|++|+|++|. +++.+...+... +
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSS
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccC
Confidence 9987654 233 56689999999999876 4321 1234457789999999999986 665555544432 7
Q ss_pred ccccEEEccCCCCCCHH----HHHHH-hcCCCCcEEEecCCCCCCHHH--HHHHHhcCcccceeeeec
Q 011541 370 EAVRELVFQDCWGLDDD----IFRFA-DVFRRAKFLSLEGCSLVTTEG--LESVILSWTDLQSLRVVS 430 (483)
Q Consensus 370 ~~L~~L~L~~~~~~~d~----~~~~~-~~~~~L~~L~l~~~~~lt~~~--l~~l~~~~~~L~~L~l~~ 430 (483)
++|++|+|++| .+++. +...+ ..+++|+.|++++| .+++.+ +..+...++.++.+.+..
T Consensus 274 ~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 274 IGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred CCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 89999999999 55553 33334 66899999999999 777665 577777777777666654
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=2.3e-16 Score=153.17 Aligned_cols=295 Identities=17% Similarity=0.076 Sum_probs=184.2
Q ss_pred cccccccccccccchhhhcCCCceEEEeecccccccCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHH
Q 011541 108 RSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALA 187 (483)
Q Consensus 108 ~~l~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~ 187 (483)
+.+++.+....... .+..+++|+.|+++++.......+ .....+..+++.. ..+++- .. .
T Consensus 47 ~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~--~~l~~L~~L~L~~--------------n~i~~~--~~-~ 106 (347)
T 4fmz_A 47 TKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGT--------------NKITDI--SA-L 106 (347)
T ss_dssp SEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGG--TTCTTCCEEECCS--------------SCCCCC--GG-G
T ss_pred cEEEEeCCccccch-hhhhcCCccEEEccCCccccchhh--hcCCcCCEEEccC--------------CcccCc--hH-H
Confidence 44444443333222 256788888888876543222111 1112344444443 122211 11 2
Q ss_pred hcCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCC-ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 188 CGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCG-DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
..+++|++|+++++.-..+.. ...+++|++|++++|. ......+..+++|++|++.++. +.+... ...
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~---~~~ 175 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-------VKDVTP---IAN 175 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-------CCCCGG---GGG
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-------cCCchh---hcc
Confidence 367888888888653222222 5568888888888873 3334557788888888888775 332211 446
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
+++|++|++++|....... ...+++|+.|++.++.+.+... +..+++|++|++.++. ++.. .. +..+++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~-l~~~---~~-~~~l~~L 245 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK-ITDL---SP-LANLSQL 245 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC---GG-GTTCTTC
T ss_pred CCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc-cCCC---cc-hhcCCCC
Confidence 7888888888876543211 4467888888888876544222 6778889999988876 3321 22 6778889
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccccee
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSL 426 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L 426 (483)
+.|++++|..... . ....+++|++|++++|.... . ..+..+++|+.|++++| .+++.....+ ..+++|+.|
T Consensus 246 ~~L~l~~n~l~~~---~-~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L 316 (347)
T 4fmz_A 246 TWLEIGTNQISDI---N-AVKDLTKLKMLNVGSNQISD-I--SVLNNLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTL 316 (347)
T ss_dssp CEEECCSSCCCCC---G-GGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEE
T ss_pred CEEECCCCccCCC---h-hHhcCCCcCEEEccCCccCC-C--hhhcCCCCCCEEECcCC-cCCCcChhHh-hccccCCEE
Confidence 9999988753331 2 23457889999998884333 2 34677888999999888 7765555544 468899999
Q ss_pred eeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 427 RVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 427 ~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
++++|. ++...- ...+++|++|.+..
T Consensus 317 ~L~~n~-l~~~~~----~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 317 FLSQNH-ITDIRP----LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSS-CCCCGG----GGGCTTCSEESSSC
T ss_pred EccCCc-cccccC----hhhhhccceeehhh
Confidence 999886 544322 34578888887764
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=2.8e-16 Score=152.52 Aligned_cols=261 Identities=15% Similarity=0.071 Sum_probs=186.7
Q ss_pred hhcCCCceEEEeecccccccCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCCCh
Q 011541 124 ISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASE 203 (483)
Q Consensus 124 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 203 (483)
+..+++|+.|+++++.......+ .....+..+++.. ..+++... ...+++|+.|+++++..
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~--~~l~~L~~L~l~~--------------n~i~~~~~---~~~l~~L~~L~l~~n~~ 144 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISAL--QNLTNLRELYLNE--------------DNISDISP---LANLTKMYSLNLGANHN 144 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGG--TTCTTCSEEECTT--------------SCCCCCGG---GTTCTTCCEEECTTCTT
T ss_pred hhcCCcCCEEEccCCcccCchHH--cCCCcCCEEECcC--------------CcccCchh---hccCCceeEEECCCCCC
Confidence 77889999999987644332111 1112344555543 22222111 34789999999997632
Q ss_pred HHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChH
Q 011541 204 FGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFD 283 (483)
Q Consensus 204 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 283 (483)
.........+++|++|+++++.......+..+++|+.|++++|. +.+... ...+++|+.|+++++.....
T Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~---~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 145 LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-------IEDISP---LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-------CCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred cccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-------cccccc---ccCCCccceeecccCCCCCC
Confidence 22122256789999999999865555558899999999999886 433221 45689999999999876433
Q ss_pred HHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHH
Q 011541 284 GIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVR 363 (483)
Q Consensus 284 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~ 363 (483)
.. ...+++|+.|+++++.+.+... +..+++|++|++.++. ++. + ..+..+++|+.|++++|...+. .
T Consensus 215 ~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~---~-~~~~~l~~L~~L~l~~n~l~~~---~ 281 (347)
T 4fmz_A 215 TP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-ISD---I-NAVKDLTKLKMLNVGSNQISDI---S 281 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCC---C-GGGTTCTTCCEEECCSSCCCCC---G
T ss_pred ch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc-cCC---C-hhHhcCCCcCEEEccCCccCCC---h
Confidence 21 4568999999999987654322 7889999999999885 442 1 3467899999999999854332 2
Q ss_pred HHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 364 ALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 364 ~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
....+++|++|++.+| .+.+.....+..+++|+.|++++| .+++... ...+++|+.|++++|.
T Consensus 282 -~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 -VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEESSSCC-
T ss_pred -hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccC---hhhhhccceeehhhhc
Confidence 2456899999999999 566666677888999999999999 5654322 5678999999999976
No 13
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=1.2e-14 Score=141.91 Aligned_cols=252 Identities=11% Similarity=0.039 Sum_probs=167.7
Q ss_pred cccchHHHHHHHhcCCCccEEEEcCCC--h---HHHHHHHHhCC-CCCEEEeecCC--ccchHHhhcC-----CCCCEEE
Q 011541 176 VEIIDRGLKALACGCPNLRRLVVVGAS--E---FGLLSVAEECL-TLQEFELHKCG--DNVLRGIAAC-----ENLQILK 242 (483)
Q Consensus 176 ~~~~~~~l~~l~~~~~~L~~L~l~~~~--~---~~l~~~~~~~~-~L~~L~l~~~~--~~~~~~i~~~-----~~L~~L~ 242 (483)
..++.. +..+....++|++|+++++. . ..+......++ +|++|++++|. +.....+..+ ++|++|+
T Consensus 8 n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 344433 33444456679999999763 2 23335556777 89999999984 3334444443 9999999
Q ss_pred eecCCCCccccccChHHHH---HHHhcC-CCCcEEEeeCCCCChHHHHHHHH---c-CcCCCeeeeccccCcH----HHH
Q 011541 243 LVGNVEGFYNSTVSDIGLT---ILAQGC-KRLVKLELSGCEGSFDGIKAIGQ---C-CQMLEELTFSDHRMDD----GWL 310 (483)
Q Consensus 243 L~~~~~~~~~~~~~~~~l~---~l~~~~-~~L~~L~L~~~~~~~~~l~~l~~---~-~~~L~~L~l~~~~~~~----~~~ 310 (483)
|++|. +++.+.. .....+ ++|++|++++|.....+...+.. . +++|++|+++++.+.+ .+.
T Consensus 87 Ls~n~-------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 87 LSGNF-------LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCSSC-------GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CcCCc-------CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 99986 6554433 333445 79999999999865444444433 3 4689999999988663 344
Q ss_pred HHhhcCC-CCcEEEeccCCCCCCCC--ChHHHhcCC-CCccEEeccccccccHHHH---HH-HHhcCccccEEEccCCCC
Q 011541 311 AALSYCE-NLKTLRFVSCKKIDPSP--GPDEYLGSC-LALERLHLQKCQLRDKKGV---RA-LFRVCEAVRELVFQDCWG 382 (483)
Q Consensus 311 ~~l~~~~-~L~~L~l~~~~~~~~~~--~l~~~~~~~-~~L~~L~L~~~~~~~~~~l---~~-l~~~~~~L~~L~L~~~~~ 382 (483)
..+...+ +|++|++.+|. +++.. .+...+..+ ++|+.|+|++|. +++.+. .. +...+++|++|+++++..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 5556666 99999999886 44321 123345566 499999999985 444332 22 223356999999999844
Q ss_pred CCHH---HHHHHhcCCCCcEEEecCCC--CCCHHHHHHHHhc---CcccceeeeecCCCCCccc
Q 011541 383 LDDD---IFRFADVFRRAKFLSLEGCS--LVTTEGLESVILS---WTDLQSLRVVSCKNIKDGE 438 (483)
Q Consensus 383 ~~d~---~~~~~~~~~~L~~L~l~~~~--~lt~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~ 438 (483)
.+.. .......+++|+.|++++|. .+++.++..+... +++|+.|+++++. +.+..
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~~ 300 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSH 300 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGGG
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCcc
Confidence 3322 22345778999999999883 3788888877655 4577788888865 65553
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=6.5e-15 Score=148.88 Aligned_cols=190 Identities=21% Similarity=0.151 Sum_probs=112.5
Q ss_pred hhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHH
Q 011541 232 IAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLA 311 (483)
Q Consensus 232 i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 311 (483)
+..+++|+.|+++++. +.+.. ....+++|++|+++++....... ...+++|+.|+++++.+.+. .
T Consensus 173 ~~~l~~L~~L~l~~n~-------l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 173 LANLTTLERLDISSNK-------VSDIS---VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp GTTCTTCCEEECCSSC-------CCCCG---GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--G
T ss_pred hccCCCCCEEECcCCc-------CCCCh---hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--h
Confidence 4455556666665553 22211 13346667777776665432211 23466777777777654431 2
Q ss_pred HhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHH
Q 011541 312 ALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFA 391 (483)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~ 391 (483)
.+..+++|++|++.++. ++.. .. +..+++|+.|++++|....... ...+++|++|+++++....-. .+
T Consensus 238 ~l~~l~~L~~L~l~~n~-l~~~---~~-~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~---~~ 305 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQ-ISNL---AP-LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS---PI 305 (466)
T ss_dssp GGGGCTTCSEEECCSSC-CCCC---GG-GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCG---GG
T ss_pred hhhcCCCCCEEECCCCc-cccc---hh-hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCch---hh
Confidence 45567777777777765 3321 11 5667788888887765332111 345778888888877433211 15
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 392 DVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 392 ~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
..+++|+.|++++| .+++... ...+++|+.|++++|. +++.. .+ ..+++|+.|.+..
T Consensus 306 ~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~l-~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 306 SNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS---SL-ANLTNINWLSAGH 362 (466)
T ss_dssp GGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG---GG-TTCTTCCEEECCS
T ss_pred cCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch---hh-ccCCCCCEEeCCC
Confidence 67888888888887 5553322 3577888888888875 54431 22 3468888888874
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=5.8e-15 Score=149.23 Aligned_cols=212 Identities=18% Similarity=0.109 Sum_probs=155.2
Q ss_pred HHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHH
Q 011541 210 AEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIG 289 (483)
Q Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~ 289 (483)
...+++|++|+++++.-.....+..+++|++|++.++. +.+... ...+++|+.|+++++..... . ..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-------l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~l 239 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-------ISDITP---LGILTNLDELSLNGNQLKDI--G-TL 239 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-------CCCCGG---GGGCTTCCEEECCSSCCCCC--G-GG
T ss_pred hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc-------cccccc---ccccCCCCEEECCCCCcccc--h-hh
Confidence 45678899999988865555668899999999999886 333211 34589999999999875432 1 23
Q ss_pred HcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcC
Q 011541 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVC 369 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 369 (483)
..+++|+.|+++++.+.+... +..+++|++|++.++. ++.. .. +..+++|+.|++++|...+.. . ...+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~---~~-~~~l~~L~~L~L~~n~l~~~~---~-~~~l 308 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNI---SP-LAGLTALTNLELNENQLEDIS---P-ISNL 308 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-CCCC---GG-GTTCTTCSEEECCSSCCSCCG---G-GGGC
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc-cCcc---cc-ccCCCccCeEEcCCCcccCch---h-hcCC
Confidence 467899999999987554322 7789999999999876 4322 22 678999999999998643322 1 4568
Q ss_pred ccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhccc
Q 011541 370 EAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSV 449 (483)
Q Consensus 370 ~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~ 449 (483)
++|+.|++++|...+... +..+++|+.|++++| .+++. . -+..+++|+.|++++|. +++..- ...+++
T Consensus 309 ~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~----~~~l~~ 376 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQ-ISDLTP----LANLTR 376 (466)
T ss_dssp TTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC-CCBCGG----GTTCTT
T ss_pred CCCCEEECcCCcCCCchh---hccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCCc-cCccch----hhcCCC
Confidence 999999999985433222 578999999999998 66543 2 24578999999999986 544322 356799
Q ss_pred CcEEEeec
Q 011541 450 LKELKWRP 457 (483)
Q Consensus 450 L~~L~~~~ 457 (483)
|++|.+..
T Consensus 377 L~~L~l~~ 384 (466)
T 1o6v_A 377 ITQLGLND 384 (466)
T ss_dssp CCEEECCC
T ss_pred CCEEeccC
Confidence 99998864
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=1e-16 Score=161.59 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=63.2
Q ss_pred CCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCC
Q 011541 317 ENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRR 396 (483)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~ 396 (483)
++|++|++.++. ++. .....+..+++|+.|++++|...+ .. ...+..+++|++|+++++ .++......+..+++
T Consensus 275 ~~L~~L~l~~n~-l~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKSK-IFA--LLKSVFSHFTDLEQLTLAQNEINK-ID-DNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSSC-CCE--ECTTTTTTCTTCCEEECTTSCCCE-EC-TTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTT
T ss_pred cCceEEEecCcc-ccc--cchhhcccCCCCCEEECCCCcccc-cC-hhHhcCcccCCEEECCCC-ccCCcChhHhcCccc
Confidence 455555555543 211 112334556666666666654221 10 111233566666666666 333332333455666
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 397 AKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 397 L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|+.|+++++ .++...... +..+++|+.|+++++. ++... ......+++|++|.+..
T Consensus 349 L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 349 LEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTNQ-LKSVP--DGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CSCCC--TTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-cccccChhh-ccccccccEEECCCCc-cccCC--HhHhccCCcccEEEccC
Confidence 777777666 444221111 2345667777776653 43321 11223456666666653
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=3.4e-14 Score=138.67 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=98.3
Q ss_pred HHHHhCCCCCEEEeecCC--ccch----HHhhcCC-CCCEEEeecCCCCccccccChHHHHHHH---hc-CCCCcEEEee
Q 011541 208 SVAEECLTLQEFELHKCG--DNVL----RGIAACE-NLQILKLVGNVEGFYNSTVSDIGLTILA---QG-CKRLVKLELS 276 (483)
Q Consensus 208 ~~~~~~~~L~~L~l~~~~--~~~~----~~i~~~~-~L~~L~L~~~~~~~~~~~~~~~~l~~l~---~~-~~~L~~L~L~ 276 (483)
.+....++|++|++++|. +... ..+..++ +|++|+|++|. +++.+...+. .. +++|++|+++
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-------l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-------LGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-------GGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-------CCHHHHHHHHHHHhccCCCccEEECc
Confidence 334444446666666652 2222 3444555 66666666654 4433222222 22 2566666666
Q ss_pred CCCCChH---HHHHHHHcC-cCCCeeeeccccCcHHHHH----Hhhc-CCCCcEEEeccCCCCCCCCCh---HHHhcCCC
Q 011541 277 GCEGSFD---GIKAIGQCC-QMLEELTFSDHRMDDGWLA----ALSY-CENLKTLRFVSCKKIDPSPGP---DEYLGSCL 344 (483)
Q Consensus 277 ~~~~~~~---~l~~l~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-~~~L~~L~l~~~~~~~~~~~l---~~~~~~~~ 344 (483)
+|..... .+......+ ++|+.|+++++.+.+.... .+.. +++|++|+++++. +++. +. ...+...+
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~-~~~~l~~~l~~~~ 166 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIK-SSDELIQILAAIP 166 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGS-CHHHHHHHHHTSC
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHH-HHHHHHHHHhcCC
Confidence 6654322 222222233 5666666666554332222 2223 2466666666554 3221 21 12223333
Q ss_pred -CccEEecccccccc--HHHHHHHHhcC-ccccEEEccCCCCCCHH----HHHHHhc-CCCCcEEEecCCCCCCHHHH--
Q 011541 345 -ALERLHLQKCQLRD--KKGVRALFRVC-EAVRELVFQDCWGLDDD----IFRFADV-FRRAKFLSLEGCSLVTTEGL-- 413 (483)
Q Consensus 345 -~L~~L~L~~~~~~~--~~~l~~l~~~~-~~L~~L~L~~~~~~~d~----~~~~~~~-~~~L~~L~l~~~~~lt~~~l-- 413 (483)
+|++|++++|.... ...+......+ ++|++|+++++. +++. ....+.. .++|+.|+|+++ .+++.+.
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 244 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLEN 244 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHH
Confidence 66666666653211 12222233334 366666666653 3331 1122222 346666666665 5544322
Q ss_pred -HHHHhcCcccceeeeecCC
Q 011541 414 -ESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 414 -~~l~~~~~~L~~L~l~~c~ 432 (483)
..+...+++|+.|++++|.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHhcCCCccEEEeccCC
Confidence 3333445566666666653
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=4.9e-16 Score=157.67 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=25.6
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCC
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCK 328 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 328 (483)
+++|++|+++++....... .....+++|+.|++.++.+.......+..+++|++|++.++.
T Consensus 151 l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred CCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 4455555555543321111 112234555555555544332222233444555555554443
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=2.8e-16 Score=164.31 Aligned_cols=85 Identities=18% Similarity=0.071 Sum_probs=41.5
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+++++.... +......+++|+.|+++++.+.......+..+++|++|++.++..... .....+..+++
T Consensus 276 ~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~l~~ 351 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE--LGTGCLENLEN 351 (606)
T ss_dssp TCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB--CCSSTTTTCTT
T ss_pred cccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc--cchhhhhccCc
Confidence 35566666666654321 111123456666666666655443334455666666666665542211 00112334555
Q ss_pred ccEEecccc
Q 011541 346 LERLHLQKC 354 (483)
Q Consensus 346 L~~L~L~~~ 354 (483)
|+.|+++++
T Consensus 352 L~~L~l~~n 360 (606)
T 3t6q_A 352 LRELDLSHD 360 (606)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555544
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.53 E-value=3.1e-15 Score=150.70 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=96.4
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
++|+.|+++++.+.+.....+..+++|++|++.++. ++. .....+..+++|+.|++++|.... . ....+..+++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~--~~~~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INK--IDDNAFWGLTHLLKLNLSQNFLGS-I-DSRMFENLDKL 349 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCE--ECTTTTTTCTTCCEEECCSSCCCE-E-CGGGGTTCTTC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccc--cChhHhcCcccCCEEECCCCccCC-c-ChhHhcCcccC
Confidence 578888888887665555667889999999999876 332 113346778999999999985322 1 12234568999
Q ss_pred cEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
++|+++++ .+++.....+..+++|+.|+++++ .++... ...+..+++|+.|++++++
T Consensus 350 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 350 EVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-cccccChhhccccccccEEECCCC-ccccCC-HhHhccCCcccEEEccCCC
Confidence 99999998 455444445678999999999998 666322 1234578999999999976
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=141.76 Aligned_cols=250 Identities=16% Similarity=0.092 Sum_probs=148.6
Q ss_pred CCccEEEEcCCChHHHHH-HHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 191 PNLRRLVVVGASEFGLLS-VAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
++|++|+++++.-..+.. ....+++|++|+++++. ......+..+++|++|+++++. ++..... ....+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~-~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-------LSNLSSS-WFKPL 123 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------CSSCCHH-HHTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-------CCcCCHh-HhCCC
Confidence 578888887653222211 23567888888888763 2233457778888888888775 4332211 23457
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc-CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR-MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
++|++|+++++....-........+++|+.|+++++. ........+..+++|++|++.++. ++. .....+..+++|
T Consensus 124 ~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~l~~l~~L 200 (353)
T 2z80_A 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQS--YEPKSLKSIQNV 200 (353)
T ss_dssp TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCE--ECTTTTTTCSEE
T ss_pred ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCc--cCHHHHhccccC
Confidence 8888888887754321110123456788888888763 333223455677888888887765 321 113345667888
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCH--HHHHHHhcCCCCcEEEecCCCCCCHHHHHHH---HhcCc
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDD--DIFRFADVFRRAKFLSLEGCSLVTTEGLESV---ILSWT 421 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d--~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l---~~~~~ 421 (483)
++|+++++.. +. ....+...+++|++|+++++..... ..+.....++.++.++++++ .+++.++..+ +..++
T Consensus 201 ~~L~l~~n~l-~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 201 SHLILHMKQH-IL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEEEECSCS-TT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCT
T ss_pred CeecCCCCcc-cc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhccc
Confidence 8888887753 22 1223344578888888887633221 12223445677788888877 7777665543 34677
Q ss_pred ccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 422 DLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 422 ~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+|+.|++++|. ++. +...+...+++|++|.+..
T Consensus 278 ~L~~L~Ls~N~-l~~--i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 278 GLLELEFSRNQ-LKS--VPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp TCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCC-CCc--cCHHHHhcCCCCCEEEeeC
Confidence 88888888764 542 3323334467788877765
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=8.2e-14 Score=143.81 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=40.0
Q ss_pred cCccccEEEccCCCCCCHHHHH---HHhcCCCCcEEEecCCCCCCHHH-HHHHHhcCcccceeeeecCCCCCccchHHHH
Q 011541 368 VCEAVRELVFQDCWGLDDDIFR---FADVFRRAKFLSLEGCSLVTTEG-LESVILSWTDLQSLRVVSCKNIKDGEVSPAL 443 (483)
Q Consensus 368 ~~~~L~~L~L~~~~~~~d~~~~---~~~~~~~L~~L~l~~~~~lt~~~-l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l 443 (483)
.+++|++|+++++ .+.+.... .+..+++|+.|+++++ .++... ....+..+++|+.|++++|. ++. +...
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~- 405 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDS- 405 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSC-
T ss_pred cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-Ccc--CChh-
Confidence 3556666666655 33333322 1345566666666665 443221 12234455666666666653 331 1111
Q ss_pred hhhcccCcEEEeec
Q 011541 444 STLFSVLKELKWRP 457 (483)
Q Consensus 444 ~~~~~~L~~L~~~~ 457 (483)
...+++|++|.+..
T Consensus 406 ~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 406 CQWPEKMRFLNLSS 419 (549)
T ss_dssp CCCCTTCCEEECTT
T ss_pred hcccccccEEECCC
Confidence 12345666666553
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=6.2e-16 Score=166.00 Aligned_cols=250 Identities=19% Similarity=0.155 Sum_probs=133.8
Q ss_pred CCCccEEEEcCCChH-HHHHHHHhCCCCCEEEeecCCc--cc-hHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 190 CPNLRRLVVVGASEF-GLLSVAEECLTLQEFELHKCGD--NV-LRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 190 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~--~~-~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
+++|++|+++++.-. .+......+++|++|+++++.- .. ...+..+++|++|++.++. ++......+..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-------l~~~~p~~l~~ 365 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-------FSGELPESLTN 365 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-------EEECCCTTHHH
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-------cCccccHHHHh
Confidence 455666666544211 1122234456666666665531 11 2235566666666666553 22111111111
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHH-cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQ-CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCL 344 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 344 (483)
..++|+.|+++++.........+.. .+++|+.|++.++.+.+.....+..+++|++|++.++.... .....+..++
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~ 442 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---TIPSSLGSLS 442 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES---CCCGGGGGCT
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC---cccHHHhcCC
Confidence 1125666666555432111111111 14567777777776554445566777888888887765222 1234456677
Q ss_pred CccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccc
Q 011541 345 ALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQ 424 (483)
Q Consensus 345 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~ 424 (483)
+|+.|++++|...+ .+......+++|++|++.++ .+.......+..+++|+.|++++| .+++..... +..+++|+
T Consensus 443 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~-~~~l~~L~ 517 (768)
T 3rgz_A 443 KLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKW-IGRLENLA 517 (768)
T ss_dssp TCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCC
T ss_pred CCCEEECCCCcccC--cCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-ccCCcCChH-HhcCCCCC
Confidence 88888888775332 11122345778888888877 333333344667888888888887 554222222 34577888
Q ss_pred eeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 425 SLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 425 ~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
.|++++|. ++.. +...+ ..+++|+.|.+..
T Consensus 518 ~L~L~~N~-l~~~-~p~~l-~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 518 ILKLSNNS-FSGN-IPAEL-GDCRSLIWLDLNT 547 (768)
T ss_dssp EEECCSSC-CEEE-CCGGG-GGCTTCCEEECCS
T ss_pred EEECCCCc-ccCc-CCHHH-cCCCCCCEEECCC
Confidence 88888875 3321 22122 3467888888764
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=2.9e-15 Score=156.67 Aligned_cols=228 Identities=17% Similarity=0.141 Sum_probs=99.2
Q ss_pred cCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCCc---cchHHhhcCCCCCEEEeecCCCCccccccChHHH-HHH
Q 011541 189 GCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCGD---NVLRGIAACENLQILKLVGNVEGFYNSTVSDIGL-TIL 263 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~---~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l-~~l 263 (483)
.+++|++|+++++.-..+ ......+++|++|+++++.. .....+..+++|++|+++++. +..... ...
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~ 371 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-------IETSDCCNLQ 371 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-------CCEEEESTTT
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-------cccccCcchh
Confidence 345666666654422111 12233456666666655521 112234555666666666553 221110 001
Q ss_pred HhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHH-HHhhcCCCCcEEEeccCCCCCCCCChHHHhcC
Q 011541 264 AQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWL-AALSYCENLKTLRFVSCKKIDPSPGPDEYLGS 342 (483)
Q Consensus 264 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~ 342 (483)
...+++|++|+++++...... ......+++|+.|+++++....... ..+..+++|++|++.++.... .....+..
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~ 447 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI---SSEQLFDG 447 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT---TCTTTTTT
T ss_pred cccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC---cCHHHHhC
Confidence 234555666666555432111 1112234556666665554322111 123455566666665554211 11223444
Q ss_pred CCCccEEeccccccccHHHH--HHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcC
Q 011541 343 CLALERLHLQKCQLRDKKGV--RALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSW 420 (483)
Q Consensus 343 ~~~L~~L~L~~~~~~~~~~l--~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~ 420 (483)
+++|+.|++++|...+ ..+ ......+++|+.|++++| .++......+..+++|+.|+++++ .++...... +..+
T Consensus 448 l~~L~~L~L~~n~l~~-~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l 523 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEA-LSHL 523 (606)
T ss_dssp CTTCCEEECTTCBCGG-GEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGG-GTTC
T ss_pred CCCCCEEECCCCCCCc-cccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhH-hCcc
Confidence 5566666665553211 000 011233555666666555 232222223345555666666555 444333222 2244
Q ss_pred cccceeeeecCC
Q 011541 421 TDLQSLRVVSCK 432 (483)
Q Consensus 421 ~~L~~L~l~~c~ 432 (483)
+.| .|++++|.
T Consensus 524 ~~L-~L~L~~N~ 534 (606)
T 3t6q_A 524 KGI-YLNLASNH 534 (606)
T ss_dssp CSC-EEECCSSC
T ss_pred ccc-EEECcCCc
Confidence 555 55555543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.49 E-value=3.5e-13 Score=138.15 Aligned_cols=132 Identities=18% Similarity=0.135 Sum_probs=76.3
Q ss_pred hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhc
Q 011541 314 SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADV 393 (483)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~ 393 (483)
..+++|++|+++++. ++. .....+..+++|+.|++++|...+-..+......+++|++|+++++..........+..
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTD--TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSC-CCT--TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCc-cCh--hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 456777777777765 332 12333566778888888877644433444445567788888887773322111112345
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcC-cccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 394 FRRAKFLSLEGCSLVTTEGLESVILSW-TDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 394 ~~~L~~L~l~~~~~lt~~~l~~l~~~~-~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+++|+.|+++++ .+++... ..+ ++|+.|++++|. ++ .+...+. .+++|++|.+..
T Consensus 398 l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N~-l~--~ip~~~~-~l~~L~~L~L~~ 453 (520)
T 2z7x_B 398 TKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSNK-IK--SIPKQVV-KLEALQELNVAS 453 (520)
T ss_dssp CTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSSC-CC--CCCGGGG-GCTTCCEEECCS
T ss_pred CccCCEEECcCC-CCCcchh----hhhcccCCEEECCCCc-cc--ccchhhh-cCCCCCEEECCC
Confidence 677777777776 5553221 122 577777777764 44 2332333 457777777764
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=1.1e-15 Score=164.18 Aligned_cols=227 Identities=19% Similarity=0.111 Sum_probs=130.4
Q ss_pred CCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 213 CLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 213 ~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
|++|++|+++++. ......+..+++|++|++.+|. +....-......+++|++|++++|.........+..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-------FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-------EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-------ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 3555555555542 2223445555666666665553 221111111234566666666666432111111222
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhc--CCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhc
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSY--CENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRV 368 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 368 (483)
..++|+.|+++++.+.+.....+.. +++|++|++.+|.... .+...+..+++|+.|++++|...+ ........
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~ 440 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSG--TIPSSLGS 440 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEES--CCCGGGGG
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccC--cccHHHhc
Confidence 2236677776666544333333333 5678888887765321 123446778899999999875322 11122345
Q ss_pred CccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcc
Q 011541 369 CEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFS 448 (483)
Q Consensus 369 ~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~ 448 (483)
+++|+.|++.++ .+.......+..+++|+.|+++++ .++..... .+..+++|+.|++++|. ++.. +...+ ..++
T Consensus 441 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~-~l~~l~~L~~L~L~~N~-l~~~-~p~~~-~~l~ 514 (768)
T 3rgz_A 441 LSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN-DLTGEIPS-GLSNCTNLNWISLSNNR-LTGE-IPKWI-GRLE 514 (768)
T ss_dssp CTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCSSC-CCSC-CCGGG-GGCT
T ss_pred CCCCCEEECCCC-cccCcCCHHHcCCCCceEEEecCC-cccCcCCH-HHhcCCCCCEEEccCCc-cCCc-CChHH-hcCC
Confidence 889999999988 444444445678899999999998 55532222 24578999999999986 4422 22222 3478
Q ss_pred cCcEEEeec
Q 011541 449 VLKELKWRP 457 (483)
Q Consensus 449 ~L~~L~~~~ 457 (483)
+|++|.+..
T Consensus 515 ~L~~L~L~~ 523 (768)
T 3rgz_A 515 NLAILKLSN 523 (768)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 999999975
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=6.4e-15 Score=149.40 Aligned_cols=281 Identities=17% Similarity=0.087 Sum_probs=174.4
Q ss_pred hhhhcCCCceEEEeecccccc--cCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEc
Q 011541 122 RLISRFPNLSNVDLVVGCFVR--RMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVV 199 (483)
Q Consensus 122 ~l~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~ 199 (483)
..+..+++|+.|+++++.... +..+.. -..+..+++..+ .++.-.. .....+++|++|+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n--------------~l~~~~~-~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNN--LFNLRTLGLRSN--------------RLKLIPL-GVFTGLSNLTKLDIS 112 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS--------------CCCSCCT-TSSTTCTTCCEEECT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhC--CccCCEEECCCC--------------cCCccCc-ccccCCCCCCEEECC
Confidence 345677888888887543322 111211 123445555432 1111000 011357899999998
Q ss_pred CCChHHH-HHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEee
Q 011541 200 GASEFGL-LSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELS 276 (483)
Q Consensus 200 ~~~~~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 276 (483)
++.-..+ ......+++|++|+++++. ......+..+++|+.|++.++. ++..... ....+++|+.|+++
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~-~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-------LTSIPTE-ALSHLHGLIVLRLR 184 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-------CSSCCHH-HHTTCTTCCEEEEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-------CcccChh-HhcccCCCcEEeCC
Confidence 6532221 2234568899999998874 3334567789999999999885 4433222 23468999999999
Q ss_pred CCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccccc
Q 011541 277 GCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQL 356 (483)
Q Consensus 277 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 356 (483)
++....... .....+++|+.|+++++...+..........+|++|++.++. ++. .....+..+++|+.|+|+++..
T Consensus 185 ~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~--~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 185 HLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTA--VPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp SCCCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCS--CCHHHHTTCTTCCEEECCSSCC
T ss_pred CCcCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccc--cCHHHhcCccccCeeECCCCcC
Confidence 886543211 122357889999998875433333333345689999998876 442 2245677889999999998753
Q ss_pred ccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCc
Q 011541 357 RDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKD 436 (483)
Q Consensus 357 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~ 436 (483)
.. .. ...+..+++|++|++.++ .+.......+..+++|+.|+|+++ .++.... ..+..+++|+.|++++++-..+
T Consensus 261 ~~-~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 261 ST-IE-GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CE-EC-TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSCEECS
T ss_pred Cc-cC-hhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCCccCc
Confidence 22 11 112345789999999887 444433344667899999999988 6653221 2234678999999998763333
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=5.2e-14 Score=138.83 Aligned_cols=230 Identities=16% Similarity=0.078 Sum_probs=109.7
Q ss_pred cCCCccEEEEcCCChHHHHH-HHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEFGLLS-VAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
.+++|+.|+++++.-..+.. ++..+++|++|+++++. ......+..+++|++|+++++. ++... ..
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~----~~ 183 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-------LTHVD----LS 183 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-------CSBCC----GG
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-------CCccc----cc
Confidence 45677777777553222221 23456777777777663 2223346667777777777664 33321 23
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|+.|+++++....- ...++|++|+++++.+.... ....++|++|++.++. +++. ..+..+++
T Consensus 184 ~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~-l~~~----~~l~~l~~ 249 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNN-LTDT----AWLLNYPG 249 (390)
T ss_dssp GCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSC-CCCC----GGGGGCTT
T ss_pred cccccceeeccccccccc------CCCCcceEEECCCCeeeecc---ccccccccEEECCCCC-Cccc----HHHcCCCC
Confidence 456666666666543211 11234555555555432210 0123456666665544 2211 23445566
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccce
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQS 425 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~ 425 (483)
|+.|+++++.... . .......+++|++|+++++.. +.. ......+++|+.|+++++ .++. +..-+..+++|+.
T Consensus 250 L~~L~Ls~n~l~~-~-~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 250 LVEVDLSYNELEK-I-MYHPFVKMQRLERLYISNNRL-VAL-NLYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLEN 322 (390)
T ss_dssp CSEEECCSSCCCE-E-ESGGGTTCSSCCEEECCSSCC-CEE-ECSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSE
T ss_pred ccEEECCCCcCCC-c-ChhHccccccCCEEECCCCcC-ccc-CcccCCCCCCCEEECCCC-ccee--cCccccccCcCCE
Confidence 6666666553221 0 011123355666666655522 211 011234556666666655 3431 1111223456666
Q ss_pred eeeecCCCCCccchHHHHhhhcccCcEEEee
Q 011541 426 LRVVSCKNIKDGEVSPALSTLFSVLKELKWR 456 (483)
Q Consensus 426 L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~ 456 (483)
|++++|. ++... ...+++|+.|.+.
T Consensus 323 L~L~~N~-i~~~~-----~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 323 LYLDHNS-IVTLK-----LSTHHTLKNLTLS 347 (390)
T ss_dssp EECCSSC-CCCCC-----CCTTCCCSEEECC
T ss_pred EECCCCc-cceeC-----chhhccCCEEEcC
Confidence 6666654 43332 1234566666554
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.43 E-value=9.8e-13 Score=135.70 Aligned_cols=108 Identities=11% Similarity=-0.010 Sum_probs=66.8
Q ss_pred hcCCCCccEEeccccccccHHHHHH--HHhcCccccEEEccCCCCCCHH-HHHHHhcCCCCcEEEecCCCCCCHHHHHHH
Q 011541 340 LGSCLALERLHLQKCQLRDKKGVRA--LFRVCEAVRELVFQDCWGLDDD-IFRFADVFRRAKFLSLEGCSLVTTEGLESV 416 (483)
Q Consensus 340 ~~~~~~L~~L~L~~~~~~~~~~l~~--l~~~~~~L~~L~L~~~~~~~d~-~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l 416 (483)
...+++|+.|++++|. +....... ....+++|+.|+++++....-. ....+..+++|+.|+++++ .++ .+...
T Consensus 330 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~ 405 (549)
T 2z81_A 330 SQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFH--PMPDS 405 (549)
T ss_dssp HHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCC--CCCSC
T ss_pred HhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCc--cCChh
Confidence 3567888888888875 33222221 1345788888888888443322 1245677888888888887 555 22222
Q ss_pred HhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 417 ILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 417 ~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+..+++|+.|++++|. ++... . ..+++|+.|.+..
T Consensus 406 ~~~~~~L~~L~Ls~N~-l~~l~--~---~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTG-IRVVK--T---CIPQTLEVLDVSN 440 (549)
T ss_dssp CCCCTTCCEEECTTSC-CSCCC--T---TSCTTCSEEECCS
T ss_pred hcccccccEEECCCCC-ccccc--c---hhcCCceEEECCC
Confidence 3456788888888875 44321 1 2246788888764
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=5.4e-15 Score=142.18 Aligned_cols=231 Identities=17% Similarity=0.157 Sum_probs=108.6
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCcc-chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDN-VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
..++++.|+++++.-..+......+++|++|+++++.-. ....+..+++|++|+|+++. ++. +......+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-------l~~--lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-------LRA--LPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-------CCC--CCGGGGGC
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-------ccc--CcHHHhcC
Confidence 347788888876533233332344777888888776322 23446677778888877765 221 11113456
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
++|++|++++|......-..+ ....+. ..+..+++|++|++.++. ++. +...+..+++|+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~-------~~~~~~---------~~~~~l~~L~~L~L~~n~-l~~---lp~~l~~l~~L~ 209 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPL-------ASTDAS---------GEHQGLVNLQSLRLEWTG-IRS---LPASIANLQNLK 209 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCS-------EEEC-C---------CCEEESTTCCEEEEEEEC-CCC---CCGGGGGCTTCC
T ss_pred cCCCEEECCCCCCccccChhH-------hhccch---------hhhccCCCCCEEECcCCC-cCc---chHhhcCCCCCC
Confidence 777777777764322100000 000000 012234555555555443 221 122244455555
Q ss_pred EEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceee
Q 011541 348 RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLR 427 (483)
Q Consensus 348 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~ 427 (483)
.|++++|.... +......+++|++|++++|.... .....+..+++|+.|+|++|...+ .. ..-+..+++|+.|+
T Consensus 210 ~L~L~~N~l~~---l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~-~~-p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 210 SLKIRNSPLSA---LGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLL-TL-PLDIHRLTQLEKLD 283 (328)
T ss_dssp EEEEESSCCCC---CCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCC-BC-CTTGGGCTTCCEEE
T ss_pred EEEccCCCCCc---CchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchh-hc-chhhhcCCCCCEEe
Confidence 55555543221 11112334555555555543222 112223455666666666653222 11 11123566667777
Q ss_pred eecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 428 VVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 428 l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
|++|..... +...+ ..+++|+.+.+.+
T Consensus 284 L~~n~~~~~--iP~~l-~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 284 LRGCVNLSR--LPSLI-AQLPANCIILVPP 310 (328)
T ss_dssp CTTCTTCCC--CCGGG-GGSCTTCEEECCG
T ss_pred CCCCCchhh--ccHHH-hhccCceEEeCCH
Confidence 766653332 22222 2346666666554
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.43 E-value=8.3e-15 Score=153.71 Aligned_cols=199 Identities=11% Similarity=0.059 Sum_probs=101.2
Q ss_pred cCCCceEEEeecccccc--cCCccccccccceeeeecCCCcccccccCCCCCcc-cch-HHHHHHH-----hcCCCccEE
Q 011541 126 RFPNLSNVDLVVGCFVR--RMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVE-IID-RGLKALA-----CGCPNLRRL 196 (483)
Q Consensus 126 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~-~~~-~~l~~l~-----~~~~~L~~L 196 (483)
.+++|+.|+++++.... +..+..+ ..+..+++.. .. ++. ..-..+. ..+++|+.|
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~--------------n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVAC--------------NRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTC--SSCCEEECTT--------------CTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccCCCCEEEecCCcCCccChHHHhcC--CCCCEEECcC--------------CCCCccccchHHHHhhhccccCCCCCEE
Confidence 78899999998654322 2222211 2344444442 33 443 2222222 235889999
Q ss_pred EEcCCChHHHHH--HHHhCCCCCEEEeecCCcc-chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC-CcE
Q 011541 197 VVVGASEFGLLS--VAEECLTLQEFELHKCGDN-VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR-LVK 272 (483)
Q Consensus 197 ~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~-~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~-L~~ 272 (483)
+++++.-..+.. ....+++|++|+++++.-. ....+..+++|+.|+++++. ++ .+......+++ |++
T Consensus 311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-------l~--~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-------IT--EIPANFCGFTEQVEN 381 (636)
T ss_dssp ECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-------EE--ECCTTSEEECTTCCE
T ss_pred ECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-------cc--cccHhhhhhcccCcE
Confidence 998764334444 5667888999998887432 22256667777777777664 22 11111234555 777
Q ss_pred EEeeCCCCChHHHHHHHHc--CcCCCeeeeccccCcHHHHHHhh-------cCCCCcEEEeccCCCCCCCCChHHHhcCC
Q 011541 273 LELSGCEGSFDGIKAIGQC--CQMLEELTFSDHRMDDGWLAALS-------YCENLKTLRFVSCKKIDPSPGPDEYLGSC 343 (483)
Q Consensus 273 L~L~~~~~~~~~l~~l~~~--~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 343 (483)
|+++++.... +...... +++|+.|+++++.+....+..+. .+++|++|++.++. ++. ........+
T Consensus 382 L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~--lp~~~~~~l 456 (636)
T 4eco_A 382 LSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISK--FPKELFSTG 456 (636)
T ss_dssp EECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCS--CCTHHHHTT
T ss_pred EEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCc--CCHHHHccC
Confidence 7776665431 1111111 22455566655554332222222 34455555555543 221 112233345
Q ss_pred CCccEEecccc
Q 011541 344 LALERLHLQKC 354 (483)
Q Consensus 344 ~~L~~L~L~~~ 354 (483)
++|+.|+++++
T Consensus 457 ~~L~~L~Ls~N 467 (636)
T 4eco_A 457 SPLSSINLMGN 467 (636)
T ss_dssp CCCSEEECCSS
T ss_pred CCCCEEECCCC
Confidence 55555555554
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.43 E-value=2.6e-15 Score=156.98 Aligned_cols=180 Identities=17% Similarity=0.123 Sum_probs=98.9
Q ss_pred hcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHH-HHhhcCCCCcEEEeccCCCCCCCCChHHHhcCC
Q 011541 265 QGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWL-AALSYCENLKTLRFVSCKKIDPSPGPDEYLGSC 343 (483)
Q Consensus 265 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 343 (483)
..+++|++|++++|...... .....+++|+.|+++++....... ..+..+++|++|++.++.... .....+..+
T Consensus 373 ~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l 447 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI---DFDGIFLGL 447 (606)
T ss_dssp HCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE---CCTTTTTTC
T ss_pred ccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc---cchhhhcCC
Confidence 34566666666665432111 112235667777776665433222 345566777777777665322 112335567
Q ss_pred CCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccc
Q 011541 344 LALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDL 423 (483)
Q Consensus 344 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L 423 (483)
++|+.|++++|...+ ..+......+++|++|++++| .++......+..+++|+.|+++++ .+++.... .+..+++|
T Consensus 448 ~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L 523 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSL 523 (606)
T ss_dssp TTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTC
T ss_pred CCCCEEECCCCcCCC-cchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHH-HccCCCcC
Confidence 777777777764221 112222345677788888777 444333334566777888888777 55432111 23456778
Q ss_pred ceeeeecCCCCCccchHHHHhhhcc-cCcEEEeec
Q 011541 424 QSLRVVSCKNIKDGEVSPALSTLFS-VLKELKWRP 457 (483)
Q Consensus 424 ~~L~l~~c~~i~~~~v~~~l~~~~~-~L~~L~~~~ 457 (483)
+.|++++|. ++. +...+ ..++ +|+.|.+..
T Consensus 524 ~~L~l~~N~-l~~--~p~~~-~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 524 STLDCSFNR-IET--SKGIL-QHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEECTTSC-CCC--EESCG-GGSCTTCCEEECCS
T ss_pred CEEECCCCc-Ccc--cCHhH-hhhcccCcEEEccC
Confidence 888887765 442 22222 2334 577777764
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=5.1e-15 Score=141.77 Aligned_cols=245 Identities=14% Similarity=0.046 Sum_probs=159.1
Q ss_pred HHHHHHhcCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHH
Q 011541 182 GLKALACGCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGL 260 (483)
Q Consensus 182 ~l~~l~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l 260 (483)
.+..+...+++|++|+++++.-..+ ......+++|++|+++++.-.....+..+++|++|+++++. ++...
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-------l~~l~- 96 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-------VQELL- 96 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-------EEEEE-
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-------ccccc-
Confidence 3455666778999999987643322 24456789999999998854333347889999999999885 44321
Q ss_pred HHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHh
Q 011541 261 TILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYL 340 (483)
Q Consensus 261 ~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~ 340 (483)
..++|++|+++++...... ...+++|+.|+++++.+.......+..+++|++|+++++. ++.. ....+.
T Consensus 97 -----~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~ 165 (317)
T 3o53_A 97 -----VGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV-NFAELA 165 (317)
T ss_dssp -----ECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEE-EGGGGG
T ss_pred -----CCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcc-cHHHHh
Confidence 3478999999888754321 1235788888888887665444455677888888888765 3321 123334
Q ss_pred cCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcC
Q 011541 341 GSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSW 420 (483)
Q Consensus 341 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~ 420 (483)
..+++|+.|++++|...... .. ..+++|++|+++++. ++.... .+..+++|+.|+++++ .++. +...+..+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~---~~-~~l~~L~~L~Ls~N~-l~~l~~-~~~~l~~L~~L~L~~N-~l~~--l~~~~~~l 236 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVK---GQ-VVFAKLKTLDLSSNK-LAFMGP-EFQSAAGVTWISLRNN-KLVL--IEKALRFS 236 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEE---CC-CCCTTCCEEECCSSC-CCEECG-GGGGGTTCSEEECTTS-CCCE--ECTTCCCC
T ss_pred hccCcCCEEECCCCcCcccc---cc-cccccCCEEECCCCc-CCcchh-hhcccCcccEEECcCC-cccc--hhhHhhcC
Confidence 56788888888887533211 11 136788888888873 332211 2566788888888887 6652 22223567
Q ss_pred cccceeeeecCCCCCccchHHHHhhhcccCcEEEee
Q 011541 421 TDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWR 456 (483)
Q Consensus 421 ~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~ 456 (483)
++|+.|+++++. +....+...+ ..+++|+.+.+.
T Consensus 237 ~~L~~L~l~~N~-~~~~~~~~~~-~~~~~L~~l~l~ 270 (317)
T 3o53_A 237 QNLEHFDLRGNG-FHCGTLRDFF-SKNQRVQTVAKQ 270 (317)
T ss_dssp TTCCEEECTTCC-CBHHHHHHHH-HTCHHHHHHHHH
T ss_pred CCCCEEEccCCC-ccCcCHHHHH-hccccceEEECC
Confidence 888888888866 5433444333 345667766665
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=5.3e-14 Score=146.61 Aligned_cols=283 Identities=15% Similarity=0.061 Sum_probs=132.2
Q ss_pred chhhhcCCCceEEEeecccccccCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcC
Q 011541 121 GRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVG 200 (483)
Q Consensus 121 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 200 (483)
..++..+++|+.|+++++...............+..+++..+. ++..... ....+++|+.|++++
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~-~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--------------IRYLPPH-VFQNVPLLTVLVLER 132 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------CCCCCTT-TTTTCTTCCEEECCS
T ss_pred HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--------------CCCCCHH-HHcCCCCCCEEEeeC
Confidence 4456677888888887544322111011111234444444321 1111000 112567788888876
Q ss_pred CChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeC
Q 011541 201 ASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSG 277 (483)
Q Consensus 201 ~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 277 (483)
+.-..+. .++..+++|++|+++++. ......+..+++|+.|+++++. ++... ...+++|+.|++++
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~----~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-------LTHVD----LSLIPSLFHANVSY 201 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-------CSBCC----GGGCTTCSEEECCS
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-------CCCcC----hhhhhhhhhhhccc
Confidence 5322222 223567788888887763 2233456677888888887765 33321 23456677777766
Q ss_pred CCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccc
Q 011541 278 CEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLR 357 (483)
Q Consensus 278 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 357 (483)
+....- ...++|+.|+++++.+.... ....++|+.|++.++. +++ ...+..+++|+.|+|++|...
T Consensus 202 n~l~~l------~~~~~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n~-l~~----~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 202 NLLSTL------AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNN-LTD----TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp SCCSEE------ECCTTCSEEECCSSCCCEEE---CSCCSCCCEEECCSSC-CCC----CGGGGGCTTCSEEECCSSCCC
T ss_pred Cccccc------cCCchhheeeccCCcccccc---cccCCCCCEEECCCCC-CCC----ChhhccCCCCCEEECCCCccC
Confidence 644221 12234555555555432110 0112455555555544 221 123445555666666555322
Q ss_pred cHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCcc
Q 011541 358 DKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDG 437 (483)
Q Consensus 358 ~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~ 437 (483)
+ . ....+..+++|+.|+|+++.. +.. ......+++|+.|+|++| .++. +..-+..+++|+.|++++|. ++..
T Consensus 268 ~-~-~~~~~~~l~~L~~L~Ls~N~l-~~l-~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~l~~L~~L~L~~N~-l~~~ 339 (597)
T 3oja_B 268 K-I-MYHPFVKMQRLERLYISNNRL-VAL-NLYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLENLYLDHNS-IVTL 339 (597)
T ss_dssp E-E-ESGGGTTCSSCCEEECTTSCC-CEE-ECSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred C-C-CHHHhcCccCCCEEECCCCCC-CCC-CcccccCCCCcEEECCCC-CCCc--cCcccccCCCCCEEECCCCC-CCCc
Confidence 1 0 011122355556666555422 210 111233555666666555 3331 11112234556666665544 3322
Q ss_pred chHHHHhhhcccCcEEEee
Q 011541 438 EVSPALSTLFSVLKELKWR 456 (483)
Q Consensus 438 ~v~~~l~~~~~~L~~L~~~ 456 (483)
. ...+++|+.|.+.
T Consensus 340 ~-----~~~~~~L~~L~l~ 353 (597)
T 3oja_B 340 K-----LSTHHTLKNLTLS 353 (597)
T ss_dssp C-----CCTTCCCSEEECC
T ss_pred C-----hhhcCCCCEEEee
Confidence 2 1234555555554
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.40 E-value=2.8e-14 Score=149.12 Aligned_cols=157 Identities=16% Similarity=0.067 Sum_probs=72.8
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCc
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCE 370 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 370 (483)
.+++|+.|+++++..... ...+..+++|++|++.++..... .....+..+++|+.|++++|.... ........++
T Consensus 374 ~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~ 448 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRV--TEFSAFLSLEKLLYLDISYTNTKI--DFDGIFLGLT 448 (606)
T ss_dssp CCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEEST--TTTTTTTTCTTCCEEECTTSCCEE--CCTTTTTTCT
T ss_pred cCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCc--cChhhhhccccCCEEECcCCCCCc--cchhhhcCCC
Confidence 344555555544432211 12233445555555554432110 001234455666666666554222 0111123456
Q ss_pred cccEEEccCCCCCCHH-HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhccc
Q 011541 371 AVRELVFQDCWGLDDD-IFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSV 449 (483)
Q Consensus 371 ~L~~L~L~~~~~~~d~-~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~ 449 (483)
+|++|+++++ .+.+. ....+..+++|+.|++++| .++..... .+..+++|+.|++++|. ++... . .....+++
T Consensus 449 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~-~-~~~~~l~~ 522 (606)
T 3vq2_A 449 SLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHNN-LLFLD-S-SHYNQLYS 522 (606)
T ss_dssp TCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSCEE-G-GGTTTCTT
T ss_pred CCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCCc-CCCcC-H-HHccCCCc
Confidence 6666666665 22221 2223455667777777766 44422111 12356677777777764 43321 1 11133566
Q ss_pred CcEEEeecC
Q 011541 450 LKELKWRPD 458 (483)
Q Consensus 450 L~~L~~~~~ 458 (483)
|+.|.+...
T Consensus 523 L~~L~l~~N 531 (606)
T 3vq2_A 523 LSTLDCSFN 531 (606)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 777777653
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=7.5e-14 Score=149.78 Aligned_cols=134 Identities=16% Similarity=0.052 Sum_probs=76.6
Q ss_pred hhcCCCceEEEeecccccccCCccccccccceeeeecCCCcccccccCCCCCcc-cch----HHHHHHH---hcCCCccE
Q 011541 124 ISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVE-IID----RGLKALA---CGCPNLRR 195 (483)
Q Consensus 124 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~-~~~----~~l~~l~---~~~~~L~~ 195 (483)
+..+++|+.|+++++...........--..+..+++.. +. ++. ..+..+. ..+++|+.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~--------------N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC--------------NRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT--------------CTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC--------------CCCcccccchHHHHhhhhcccccCCccE
Confidence 33789999999986543222111111112344555443 33 332 2222222 34578999
Q ss_pred EEEcCCChHHHHH--HHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC-CcE
Q 011541 196 LVVVGASEFGLLS--VAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR-LVK 272 (483)
Q Consensus 196 L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~-L~~ 272 (483)
|+++++.-..+.. ....+++|+.|+++++.-.....+..+++|+.|+|+++. +. .+......+++ |+.
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~-------l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-------IE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-------CS--CCCTTSCEECTTCCE
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-------cc--cchHHHhhccccCCE
Confidence 9988764334444 566788899999888743333366777888888888775 22 11111234556 777
Q ss_pred EEeeCCCC
Q 011541 273 LELSGCEG 280 (483)
Q Consensus 273 L~L~~~~~ 280 (483)
|+++++..
T Consensus 624 L~Ls~N~L 631 (876)
T 4ecn_A 624 LGFSHNKL 631 (876)
T ss_dssp EECCSSCC
T ss_pred EECcCCCC
Confidence 77777654
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=3e-14 Score=136.92 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=126.7
Q ss_pred hCCCCCEEEeecCCcc-chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 212 ECLTLQEFELHKCGDN-VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~~-~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
..+++++|+++++.-. ....+..+++|++|+|+++. ++. +......+++|++|+++++..
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-------l~~--lp~~~~~l~~L~~L~Ls~n~l---------- 139 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-------LME--LPDTMQQFAGLETLTLARNPL---------- 139 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-------CCC--CCSCGGGGTTCSEEEEESCCC----------
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-------ccc--hhHHHhccCCCCEEECCCCcc----------
Confidence 3578888888877422 23346667788888887765 221 111123456666666666543
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChH------HHhcCCCCccEEeccccccccHHHHHH
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPD------EYLGSCLALERLHLQKCQLRDKKGVRA 364 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~------~~~~~~~~L~~L~L~~~~~~~~~~l~~ 364 (483)
. .++..+..+++|++|++.+|......+... ..+..+++|+.|++++|... .+..
T Consensus 140 ---------------~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~ 200 (328)
T 4fcg_A 140 ---------------R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPA 200 (328)
T ss_dssp ---------------C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCG
T ss_pred ---------------c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchH
Confidence 2 112235667888888888776544221100 01345899999999998532 2222
Q ss_pred HHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHh
Q 011541 365 LFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALS 444 (483)
Q Consensus 365 l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~ 444 (483)
....+++|++|+++++.... ....+..+++|+.|++++|...+ . +...+..+++|+.|++++|...... ...+
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~-~-~p~~~~~l~~L~~L~L~~n~~~~~~--p~~~- 273 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALR-N-YPPIFGGRAPLKRLILKDCSNLLTL--PLDI- 273 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCC-B-CCCCTTCCCCCCEEECTTCTTCCBC--CTTG-
T ss_pred hhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchh-h-hHHHhcCCCCCCEEECCCCCchhhc--chhh-
Confidence 34568999999999984432 22246789999999999984333 1 1122456899999999999755432 2122
Q ss_pred hhcccCcEEEeec
Q 011541 445 TLFSVLKELKWRP 457 (483)
Q Consensus 445 ~~~~~L~~L~~~~ 457 (483)
..+++|++|.+..
T Consensus 274 ~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 274 HRLTQLEKLDLRG 286 (328)
T ss_dssp GGCTTCCEEECTT
T ss_pred hcCCCCCEEeCCC
Confidence 4579999999986
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=4.8e-13 Score=137.10 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=77.7
Q ss_pred CCceEEEeecccccccCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCCChHHHH
Q 011541 128 PNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLL 207 (483)
Q Consensus 128 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~l~ 207 (483)
++++.|+++++............-..+..+++.. ..++...... ...+++|++|+++++.-..+.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISH--------------NRIQYLDISV-FKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS--------------SCCCEEEGGG-GTTCTTCCEEECCSSCCCEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCC--------------CccCCcChHH-hhcccCCCEEecCCCceeecC
Confidence 7899999986654322110001112344555553 2222211111 236789999999876322222
Q ss_pred HHHHhCCCCCEEEeecCCcc---chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCC--cEEEeeCCCC
Q 011541 208 SVAEECLTLQEFELHKCGDN---VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRL--VKLELSGCEG 280 (483)
Q Consensus 208 ~~~~~~~~L~~L~l~~~~~~---~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L--~~L~L~~~~~ 280 (483)
.. .+++|++|+++++.-. ....+..+++|++|+++++. ++... ...+++| +.|+++++..
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-------l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-------LEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-------CCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-------cchhh----ccccccceeeEEEeecccc
Confidence 22 6899999999988532 23678899999999999886 55532 3346777 9999998765
No 39
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.38 E-value=4.4e-13 Score=114.37 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=74.5
Q ss_pred CccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhc----CCCCcEEEecCCCCCCHHHHHHHHhcC
Q 011541 345 ALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADV----FRRAKFLSLEGCSLVTTEGLESVILSW 420 (483)
Q Consensus 345 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~----~~~L~~L~l~~~~~lt~~~l~~l~~~~ 420 (483)
+|++|++++|. +++.++..+ ..|++|++|+|.+|..++|.++..+.. +++|++|+|++|.++|+.|+..+. .|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 57777777775 777777766 357777777777777777777766654 357888888888778888887765 57
Q ss_pred cccceeeeecCCCCCccch-HHHHhhhcccCc
Q 011541 421 TDLQSLRVVSCKNIKDGEV-SPALSTLFSVLK 451 (483)
Q Consensus 421 ~~L~~L~l~~c~~i~~~~v-~~~l~~~~~~L~ 451 (483)
++|++|+|++|+.+++.++ ...+...+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8888888888888887653 334445566544
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=1e-13 Score=130.59 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=77.4
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
+++|++|+++++.+.......+..+++|++|++.++. ++. .....+..+++|+.|+++++.... .. ......+++
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~ 178 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQA--LPDDTFRDLGNLTHLFLHGNRISS-VP-ERAFRGLHS 178 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSCCCE-EC-TTTTTTCTT
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccc--cCHhHhccCCCccEEECCCCcccc-cC-HHHhcCccc
Confidence 4555666655554443323345566777777776654 221 112234566777777777664221 00 011234667
Q ss_pred ccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccch
Q 011541 372 VRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEV 439 (483)
Q Consensus 372 L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v 439 (483)
|++|+++++ .+.+.....+..+++|+.|+++++ .++.... ..+..+++|+.|++++++-..+...
T Consensus 179 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 179 LDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCCccCCCCc
Confidence 777777776 333333334556778888888877 5553222 2345678888888887664333333
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.38 E-value=1.2e-13 Score=136.28 Aligned_cols=245 Identities=15% Similarity=0.033 Sum_probs=147.0
Q ss_pred hcCCCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHH
Q 011541 188 CGCPNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILA 264 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~ 264 (483)
..+++|++|+++++.-..+. .....+++|++|+++++. ......+..+++|++|+++++. ++.... .+.
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~-~~~ 137 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-------LSSLPR-GIF 137 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCT-TTT
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-------cCcCCH-HHh
Confidence 36778888888765322221 133567888888888773 2233456778888888888775 332111 112
Q ss_pred hcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCC---ChH----
Q 011541 265 QGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSP---GPD---- 337 (483)
Q Consensus 265 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~l~---- 337 (483)
..+++|++|+++++....... .....+++|+.|+++++.+... .+..+++|++|++.++. ++... .+.
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL-LSTLAIPIAVEELDA 212 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC-CSEEECCSSCSEEEC
T ss_pred cCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc-ccccCCCCcceEEEC
Confidence 457788888888876432211 1123567888888887764432 13455666666655442 11000 000
Q ss_pred -------HHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCH
Q 011541 338 -------EYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTT 410 (483)
Q Consensus 338 -------~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~ 410 (483)
......++|+.|+++++...+. .....+++|++|+++++ .+.+.....+..+++|+.|+++++ .++.
T Consensus 213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 286 (390)
T 3o6n_A 213 SHNSINVVRGPVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVA 286 (390)
T ss_dssp CSSCCCEEECCCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCE
T ss_pred CCCeeeeccccccccccEEECCCCCCccc----HHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcc
Confidence 0012245788888887753332 23455889999999888 444443445677899999999988 6553
Q ss_pred HHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 411 EGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 411 ~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
. ......+++|+.|++++|. ++. +...+ ..+++|++|.+..
T Consensus 287 ~--~~~~~~l~~L~~L~L~~n~-l~~--~~~~~-~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 287 L--NLYGQPIPTLKVLDLSHNH-LLH--VERNQ-PQFDRLENLYLDH 327 (390)
T ss_dssp E--ECSSSCCTTCCEEECCSSC-CCC--CGGGH-HHHTTCSEEECCS
T ss_pred c--CcccCCCCCCCEEECCCCc-cee--cCccc-cccCcCCEEECCC
Confidence 1 1122467899999999985 543 22223 3468999999975
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1.1e-12 Score=124.98 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=55.7
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
+++|+.|+++++.+.+. ..+..+++|++|++.++. ++.. .. +..+++|+.|++++|...+. .. ...+++
T Consensus 106 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~-l~~~---~~-l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~ 174 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQ-ITNI---SP-LAGLTNLQYLSIGNAQVSDL---TP-LANLSK 174 (308)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSC-CCCC---GG-GGGCTTCCEEECCSSCCCCC---GG-GTTCTT
T ss_pred CCCCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCc-cCcC---cc-ccCCCCccEEEccCCcCCCC---hh-hcCCCC
Confidence 44455555544443221 114455555555555543 2211 11 44455555555555532211 11 233555
Q ss_pred ccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 372 VRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 372 L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
|+.|+++++....-.. +..+++|+.|+++++ .+++.. . +..+++|+.|+++++.
T Consensus 175 L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 175 LTTLKADDNKISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCEEECCSSCCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEE
T ss_pred CCEEECCCCccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCe
Confidence 5555555552221111 445556666666655 443222 1 2455666666666543
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=1.1e-13 Score=148.64 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=128.3
Q ss_pred chhhhcCCCceEEEeecccccc-------------------cCCccccccccceeeeecCCCcccccccCCCCCcccchH
Q 011541 121 GRLISRFPNLSNVDLVVGCFVR-------------------RMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDR 181 (483)
Q Consensus 121 ~~l~~~~~~L~~l~l~~~~~~~-------------------~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~ 181 (483)
+..+..+++|+.|+++++.... +..+.-..-..+..+++..+. +...
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--------------l~~~ 506 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--------------NMTQ 506 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--------------TCCS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--------------CCcc
Confidence 4457789999999998765543 212110012345555555321 1111
Q ss_pred HHHHHHhcCCCccEEEEcCCC-hH--HHHHHHH-------hCCCCCEEEeecCCccc-hH--HhhcCCCCCEEEeecCCC
Q 011541 182 GLKALACGCPNLRRLVVVGAS-EF--GLLSVAE-------ECLTLQEFELHKCGDNV-LR--GIAACENLQILKLVGNVE 248 (483)
Q Consensus 182 ~l~~l~~~~~~L~~L~l~~~~-~~--~l~~~~~-------~~~~L~~L~l~~~~~~~-~~--~i~~~~~L~~L~L~~~~~ 248 (483)
.-.. ...+++|+.|+++++. -. .++.... .+++|+.|+++++.-.. .. .+..+++|+.|+|+++.
T Consensus 507 iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~- 584 (876)
T 4ecn_A 507 LPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK- 584 (876)
T ss_dssp CCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-
T ss_pred ChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-
Confidence 0111 2367899999998764 22 2333222 44699999999884333 33 68899999999999886
Q ss_pred CccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcC-CCeeeeccccCcHHHHHHhhcC--CCCcEEEec
Q 011541 249 GFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQM-LEELTFSDHRMDDGWLAALSYC--ENLKTLRFV 325 (483)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~ 325 (483)
++. +. ....+++|+.|+++++... .+......+++ |+.|+++++.+. .++..+..+ ++|+.|+++
T Consensus 585 ------l~~--lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 585 ------VRH--LE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp ------CCB--CC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred ------ccc--ch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 332 11 2346789999999998754 22222334566 999999888755 222233333 337777777
Q ss_pred cCCCCCCCCChHHHhc--CCCCccEEeccccccccHHHHHHHHhcCccccEEEccCC
Q 011541 326 SCKKIDPSPGPDEYLG--SCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDC 380 (483)
Q Consensus 326 ~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 380 (483)
++......+.+..... .+++|+.|++++|.... -...++..+++|+.|+|+++
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC
Confidence 6653221011110011 23466666666654221 11223334566666666655
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.8e-14 Score=138.82 Aligned_cols=232 Identities=15% Similarity=0.124 Sum_probs=148.3
Q ss_pred cCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
.+++|++|+++++.-.++ ......+++|++|+++++. ......+..+++|++|+++++. +..........
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~ 146 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-------YKTLGETSLFS 146 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-------CSSSCSSCSCT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-------CcccCchhhhc
Confidence 578899999886532222 1234567889999998874 3333447788999999998875 33211101234
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+++++.............+++|++|+++++.+.......+..+++|++|++.++. ++. ........+++
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--~~~~~~~~~~~ 223 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HIL--LLEIFVDVTSS 223 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STT--HHHHHHHHTTT
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-ccc--chhhhhhhccc
Confidence 578899999988743222111222356889999998887665545567788899999998776 331 22334556889
Q ss_pred ccEEeccccccccH--HHHHHHHhcCccccEEEccCCCCCCHH----HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhc
Q 011541 346 LERLHLQKCQLRDK--KGVRALFRVCEAVRELVFQDCWGLDDD----IFRFADVFRRAKFLSLEGCSLVTTEGLESVILS 419 (483)
Q Consensus 346 L~~L~L~~~~~~~~--~~l~~l~~~~~~L~~L~L~~~~~~~d~----~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~ 419 (483)
|+.|+++++...+. ..+.. ...+..++.+.+.++ .+++. +...+..+++|+.|+++++ .++.- -..++..
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i-~~~~~~~ 299 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSV-PDGIFDR 299 (353)
T ss_dssp EEEEEEESCBCTTCCCC-------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred ccEEECCCCcccccccccccc-ccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCcc-CHHHHhc
Confidence 99999988752221 11111 234677888888887 44443 2334678899999999988 66521 1223457
Q ss_pred CcccceeeeecCCCC
Q 011541 420 WTDLQSLRVVSCKNI 434 (483)
Q Consensus 420 ~~~L~~L~l~~c~~i 434 (483)
+++|+.|++++++-.
T Consensus 300 l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 300 LTSLQKIWLHTNPWD 314 (353)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 889999999997633
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=133.29 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=64.5
Q ss_pred hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhc
Q 011541 314 SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADV 393 (483)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~ 393 (483)
..+++|++|++.++. ++. .....+..+++|+.|+++++...+-..+......+++|++|+++++.............
T Consensus 350 ~~l~~L~~L~l~~n~-l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSC-CCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCc-ccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 455666666666654 221 11233456677777777766433222333334456677777776663211011112334
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcC-cccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 394 FRRAKFLSLEGCSLVTTEGLESVILSW-TDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 394 ~~~L~~L~l~~~~~lt~~~l~~l~~~~-~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+++|+.|+++++ .+++. +...+ ++|+.|++++|. ++ .+...+. .+++|++|.+..
T Consensus 427 l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N~-l~--~ip~~~~-~l~~L~~L~L~~ 482 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNNR-IM--SIPKDVT-HLQALQELNVAS 482 (562)
T ss_dssp CTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSSC-CC--CCCTTTT-SSCCCSEEECCS
T ss_pred cccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCCc-Cc--ccChhhc-CCCCCCEEECCC
Confidence 566666666665 44421 11222 466666666653 43 2222222 345666666653
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=1.4e-13 Score=145.87 Aligned_cols=84 Identities=27% Similarity=0.240 Sum_probs=38.2
Q ss_pred cCCCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHH-
Q 011541 189 GCPNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILA- 264 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~- 264 (483)
.+++|++|+++++.-.++. .....+++|++|+++++. ......+..+++|++|++.++. ++......+.
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~ 167 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-------IQALKSEELDI 167 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-------CCCBCHHHHGG
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-------ccccCHHHhhc
Confidence 3455666665543211111 112345566666665552 1222334455666666666553 2221111111
Q ss_pred hcCCCCcEEEeeCCC
Q 011541 265 QGCKRLVKLELSGCE 279 (483)
Q Consensus 265 ~~~~~L~~L~L~~~~ 279 (483)
..+++|++|+++++.
T Consensus 168 ~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ 182 (680)
T ss_dssp GTTCEESEEECTTCC
T ss_pred cccccccEEECCCCc
Confidence 134566666666654
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.36 E-value=8e-15 Score=140.09 Aligned_cols=227 Identities=12% Similarity=0.072 Sum_probs=126.6
Q ss_pred cCCCccEEEEcC-CChH-HHHHHHHhCCCCCEEEeecCCc--cchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHH
Q 011541 189 GCPNLRRLVVVG-ASEF-GLLSVAEECLTLQEFELHKCGD--NVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILA 264 (483)
Q Consensus 189 ~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~--~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~ 264 (483)
.+++|++|++++ ..-. .+......+++|++|+++++.- .....+..+++|++|+++++. +..... ...
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------l~~~~p-~~~ 145 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-------LSGTLP-PSI 145 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-------EESCCC-GGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-------cCCcCC-hHH
Confidence 567888888873 2211 1222345678888888877642 344567778888888888765 332111 113
Q ss_pred hcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCC
Q 011541 265 QGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCL 344 (483)
Q Consensus 265 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 344 (483)
..+++|++|+++++.........+....++|+.|+++++.+.......+..++ |++|++.++. ++. .....+..++
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~--~~~~~~~~l~ 221 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEG--DASVLFGSDK 221 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEE--CCGGGCCTTS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccC--cCCHHHhcCC
Confidence 35778888888877653221112222223777888777765544444455555 7777777665 221 1244456677
Q ss_pred CccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccc
Q 011541 345 ALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQ 424 (483)
Q Consensus 345 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~ 424 (483)
+|+.|+++++...... .. ...+++|++|+++++ .+++.....+..+++|+.|+++++ .+++.. ... ..+++|+
T Consensus 222 ~L~~L~L~~N~l~~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~i-p~~-~~l~~L~ 294 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDL--GK-VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEI-PQG-GNLQRFD 294 (313)
T ss_dssp CCSEEECCSSEECCBG--GG-CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS-EEEEEC-CCS-TTGGGSC
T ss_pred CCCEEECCCCceeeec--Cc-ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCC-cccccC-CCC-ccccccC
Confidence 7777777776432111 11 234567777777766 333333334556667777777766 443111 011 3455666
Q ss_pred eeeeecCCCC
Q 011541 425 SLRVVSCKNI 434 (483)
Q Consensus 425 ~L~l~~c~~i 434 (483)
.|++.+++.+
T Consensus 295 ~l~l~~N~~l 304 (313)
T 1ogq_A 295 VSAYANNKCL 304 (313)
T ss_dssp GGGTCSSSEE
T ss_pred hHHhcCCCCc
Confidence 6666665433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=2.9e-13 Score=130.24 Aligned_cols=242 Identities=12% Similarity=0.027 Sum_probs=144.6
Q ss_pred CCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 191 PNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
++|+.|+++++.-.++. .....+++|++|+++++. ......+..+++|++|+++++. ++... ....
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------l~~l~----~~~~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-------LKELP----EKMP 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------CSBCC----SSCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-------CCccC----hhhc
Confidence 57888888765322221 124567888888888773 3334567788888888888775 32211 0123
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcH--HHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDD--GWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
++|++|+++++....... .....+++|+.|+++++.... .....+..+++|++|++.++. ++..+. ...++
T Consensus 121 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~-----~~~~~ 193 (330)
T 1xku_A 121 KTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ-----GLPPS 193 (330)
T ss_dssp TTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS-----SCCTT
T ss_pred ccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCc-----ccccc
Confidence 678888888876543222 233457888888888876532 223456678888888887765 332111 11268
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccce
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQS 425 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~ 425 (483)
|+.|+++++.... ... .....+++|++|+++++ .+++.....+..+++|+.|+++++ .++ .+..-+..+++|+.
T Consensus 194 L~~L~l~~n~l~~-~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 194 LTELHLDGNKITK-VDA-ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLV--KVPGGLADHKYIQV 267 (330)
T ss_dssp CSEEECTTSCCCE-ECT-GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCS--SCCTTTTTCSSCCE
T ss_pred CCEEECCCCcCCc-cCH-HHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCc--cCChhhccCCCcCE
Confidence 8888888875222 111 12345788888888887 343333334567888888888887 555 22222346788888
Q ss_pred eeeecCCCCCccchHHHH----hhhcccCcEEEeec
Q 011541 426 LRVVSCKNIKDGEVSPAL----STLFSVLKELKWRP 457 (483)
Q Consensus 426 L~l~~c~~i~~~~v~~~l----~~~~~~L~~L~~~~ 457 (483)
|+++++. ++......+. ....+.|+.+.+..
T Consensus 268 L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 268 VYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp EECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred EECCCCc-CCccChhhcCCcccccccccccceEeec
Confidence 8888865 5443221000 01135666666654
No 49
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.35 E-value=2e-12 Score=110.34 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=91.6
Q ss_pred CCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhc---CccccEEEccCCCCCCHHHHHHHhc
Q 011541 317 ENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRV---CEAVRELVFQDCWGLDDDIFRFADV 393 (483)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~d~~~~~~~~ 393 (483)
.+|++|++++|. +++. ++.. +..|++|++|+|++|..++|.++..+... |++|++|+|++|..++|.++..+..
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCC-ccHH-HHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 369999999998 7763 6544 57899999999999999999999999873 6799999999999999999998899
Q ss_pred CCCCcEEEecCCCCCCHHHH--HHHHhcCcccce
Q 011541 394 FRRAKFLSLEGCSLVTTEGL--ESVILSWTDLQS 425 (483)
Q Consensus 394 ~~~L~~L~l~~~~~lt~~~l--~~l~~~~~~L~~ 425 (483)
+++|++|+|++|+.+|+.++ ..+...+|+++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 99999999999999998874 556667787654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.35 E-value=6.4e-14 Score=141.00 Aligned_cols=230 Identities=15% Similarity=0.066 Sum_probs=154.2
Q ss_pred CCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 191 PNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
++|+.|+++++.-.++ ...+..+++|++|+++++. ......+..+++|++|+|+++. ++..... ....+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~-~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-------LTVIPSG-AFEYL 146 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------CSBCCTT-TSSSC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-------CCccChh-hhccc
Confidence 6899999987643222 2234578999999999884 3334567889999999999886 3322111 13457
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc-CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR-MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
++|++|+++++....-. ......+++|+.|+++++. ........+..+++|++|++.++. ++..+ .+..+++|
T Consensus 147 ~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L 220 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP----NLTPLVGL 220 (452)
T ss_dssp TTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC----CCTTCTTC
T ss_pred CCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc----cccccccc
Confidence 89999999998754211 1123467899999999853 222222346688999999998876 44322 25678899
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccccee
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSL 426 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L 426 (483)
+.|+|+++..... ....+..+++|+.|++.++ .++......+..+++|+.|+|+++ .++... ...+..+++|+.|
T Consensus 221 ~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L 295 (452)
T 3zyi_A 221 EELEMSGNHFPEI--RPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLP-HDLFTPLRYLVEL 295 (452)
T ss_dssp CEEECTTSCCSEE--CGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTSSTTCTTCCEE
T ss_pred cEEECcCCcCccc--CcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccC-hHHhccccCCCEE
Confidence 9999998853321 1123456889999999988 444333344677899999999988 665221 1223467899999
Q ss_pred eeecCCCCCccch
Q 011541 427 RVVSCKNIKDGEV 439 (483)
Q Consensus 427 ~l~~c~~i~~~~v 439 (483)
++++++-..+-.+
T Consensus 296 ~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 296 HLHHNPWNCDCDI 308 (452)
T ss_dssp ECCSSCEECSTTT
T ss_pred EccCCCcCCCCCc
Confidence 9998764444333
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=1.6e-12 Score=130.60 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=104.6
Q ss_pred CCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC
Q 011541 190 CPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR 269 (483)
Q Consensus 190 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (483)
+++|++|+++++.-.++. ....+++|++|+++++.-... .+..+++|++|+++++. ++... ...+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~-------l~~~~----~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNK-------LTNLD----VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSC-------CSCCC----CTTCTT
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCC-------Cceee----cCCCCc
Confidence 456666666654222222 234566666666666532222 25566666666666654 33221 234566
Q ss_pred CcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEE
Q 011541 270 LVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERL 349 (483)
Q Consensus 270 L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 349 (483)
|++|+++++....-. ...+++|+.|+++++.+... .+..+++|++|++.++..++.. .+..+++|+.|
T Consensus 108 L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L 175 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTL 175 (457)
T ss_dssp CCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-----CCTTCTTCCEE
T ss_pred CCEEECCCCcCCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-----ccccCCcCCEE
Confidence 666666666443211 23456666666666654331 1455666666666665444321 13445666666
Q ss_pred eccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeee
Q 011541 350 HLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVV 429 (483)
Q Consensus 350 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~ 429 (483)
+++++.... +. ...+++|+.|++.++.... . .+..+++|+.|+++++ .++. +. +..+++|+.|+++
T Consensus 176 ~ls~n~l~~---l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N-~l~~--ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 176 DCSFNKITE---LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSN-KLTE--ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp ECCSSCCCC---CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSS-CCSC--CC--CTTCTTCSEEECC
T ss_pred ECCCCccce---ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCC-cccc--cC--ccccCCCCEEEee
Confidence 666653222 11 2345666666666653222 1 1445566666666665 4443 11 3355666666666
Q ss_pred cCC
Q 011541 430 SCK 432 (483)
Q Consensus 430 ~c~ 432 (483)
++.
T Consensus 242 ~N~ 244 (457)
T 3bz5_A 242 VNP 244 (457)
T ss_dssp SSC
T ss_pred CCc
Confidence 653
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=6.4e-14 Score=140.45 Aligned_cols=230 Identities=14% Similarity=0.070 Sum_probs=154.9
Q ss_pred CCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 191 PNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
++++.|+++++.-..+ ...+..+++|++|+++++. ......+..+++|++|+|+++. ++...-. ....+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-------l~~~~~~-~~~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-------LTTIPNG-AFVYL 135 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-------CSSCCTT-TSCSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-------CCeeCHh-Hhhcc
Confidence 6899999987632222 1234578999999999884 3344678889999999999885 3322111 13457
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc-CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR-MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
++|++|+++++....-. ......+++|+.|+++++. ........+..+++|++|++.++. ++..+ .+..+++|
T Consensus 136 ~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L 209 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP----NLTPLIKL 209 (440)
T ss_dssp SSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC----CCTTCSSC
T ss_pred ccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc----ccCCCccc
Confidence 89999999998754221 1123457899999999853 222222356788999999998876 44322 25678899
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccccee
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSL 426 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L 426 (483)
+.|+|++|.... .. ...+..+++|+.|++.++ .+++.....+..+++|+.|+|+++ .++... ...+..+++|+.|
T Consensus 210 ~~L~Ls~N~l~~-~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L 284 (440)
T 3zyj_A 210 DELDLSGNHLSA-IR-PGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLP-HDLFTPLHHLERI 284 (440)
T ss_dssp CEEECTTSCCCE-EC-TTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCC-TTTTSSCTTCCEE
T ss_pred CEEECCCCccCc-cC-hhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccC-hhHhccccCCCEE
Confidence 999999885332 11 123345889999999987 444443344667899999999988 665322 1234568899999
Q ss_pred eeecCCCCCccch
Q 011541 427 RVVSCKNIKDGEV 439 (483)
Q Consensus 427 ~l~~c~~i~~~~v 439 (483)
++++++-..+-.+
T Consensus 285 ~L~~Np~~CdC~l 297 (440)
T 3zyj_A 285 HLHHNPWNCNCDI 297 (440)
T ss_dssp ECCSSCEECSSTT
T ss_pred EcCCCCccCCCCc
Confidence 9998764444333
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.33 E-value=1.3e-14 Score=138.27 Aligned_cols=226 Identities=14% Similarity=0.057 Sum_probs=112.2
Q ss_pred CCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCCcc----chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 191 PNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCGDN----VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~----~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
++|++|+++++.-..+. .++..+++|++|+++++.-. ....+..+++|++|+++++. +.... ....
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------i~~l~--~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------VITMS--SNFL 98 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-------EEEEE--EEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-------cccCh--hhcC
Confidence 45666666544221111 12344566666666655311 12344456666666666554 22100 0022
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+++++.............+++|+.|+++++.+.......+..+++|++|++.++.. +. ......+..+++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~-~~~~~~~~~l~~ 176 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QE-NFLPDIFTELRN 176 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE-GG-GEECSCCTTCTT
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc-cc-ccchhHHhhCcC
Confidence 4566666666665432111111223456666666666654443334455667777777766542 11 011223455667
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcC-cccc
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSW-TDLQ 424 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~-~~L~ 424 (483)
|+.|++++|...+ .. ......+++|++|+++++.. .+.....+..+++|+.|+++++ .++......+ ..+ ++|+
T Consensus 177 L~~L~Ls~n~l~~-~~-~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~ 251 (306)
T 2z66_A 177 LTFLDLSQCQLEQ-LS-PTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLA 251 (306)
T ss_dssp CCEEECTTSCCCE-EC-TTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSC-CCCCTTCC
T ss_pred CCEEECCCCCcCC-cC-HHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCC-CCcccCHHHH-HhhhccCC
Confidence 7777777664222 10 11123466777777776632 2221122456777777777777 5543222222 234 3778
Q ss_pred eeeeecCC
Q 011541 425 SLRVVSCK 432 (483)
Q Consensus 425 ~L~l~~c~ 432 (483)
.|++++++
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 88887765
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=2.8e-13 Score=141.14 Aligned_cols=245 Identities=15% Similarity=0.040 Sum_probs=153.4
Q ss_pred hcCCCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHH
Q 011541 188 CGCPNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILA 264 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~ 264 (483)
..+++|+.|+++++.-.++. ..+..+++|++|+++++. ......+..+++|++|+|+++. ++.... .+.
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~-~~~ 143 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-------LSSLPR-GIF 143 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCT-TTT
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-------CCCCCH-HHh
Confidence 46788999998876332222 234568889999998874 3333456788899999998875 332111 112
Q ss_pred hcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCC----------
Q 011541 265 QGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSP---------- 334 (483)
Q Consensus 265 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---------- 334 (483)
..+++|++|++++|....... .....+++|+.|+++++.+... .+..+++|++|++.++. ++...
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL-LSTLAIPIAVEELDA 218 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC-CSEEECCTTCSEEEC
T ss_pred ccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc-cccccCCchhheeec
Confidence 457889999998886532211 1223578899999988765432 13456667766665543 11000
Q ss_pred ---ChHH-HhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCH
Q 011541 335 ---GPDE-YLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTT 410 (483)
Q Consensus 335 ---~l~~-~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~ 410 (483)
.+.. .....++|+.|++++|...+. .....+++|+.|+++++ .+.......+..+++|+.|+|+++ .++.
T Consensus 219 s~n~l~~~~~~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 292 (597)
T 3oja_B 219 SHNSINVVRGPVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVA 292 (597)
T ss_dssp CSSCCCEEECSCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCE
T ss_pred cCCcccccccccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCC
Confidence 0000 001235788888887754332 23455889999999988 444444445678899999999988 6653
Q ss_pred HHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 411 EGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 411 ~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+......+++|+.|+|++|. ++. +...+ ..+++|+.|.+..
T Consensus 293 --l~~~~~~l~~L~~L~Ls~N~-l~~--i~~~~-~~l~~L~~L~L~~ 333 (597)
T 3oja_B 293 --LNLYGQPIPTLKVLDLSHNH-LLH--VERNQ-PQFDRLENLYLDH 333 (597)
T ss_dssp --EECSSSCCTTCCEEECCSSC-CCC--CGGGH-HHHTTCSEEECCS
T ss_pred --CCcccccCCCCcEEECCCCC-CCc--cCccc-ccCCCCCEEECCC
Confidence 22223457899999999986 542 33333 3469999999975
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.32 E-value=6.4e-14 Score=146.97 Aligned_cols=248 Identities=10% Similarity=0.036 Sum_probs=133.8
Q ss_pred cCCCccEEEEcCCChHH------------------HHHHHH--hCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecC
Q 011541 189 GCPNLRRLVVVGASEFG------------------LLSVAE--ECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGN 246 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~ 246 (483)
.+++|++|+++++.-.+ +..... .+++|++|++++|. ......+.++++|++|+++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 67899999998764333 444444 78899999999874 344567888999999999887
Q ss_pred CCCccccccCh-HHHHHHH-----hcCCCCcEEEeeCCCCChHHHHH--HHHcCcCCCeeeeccccCcHHHHHHhhcCCC
Q 011541 247 VEGFYNSTVSD-IGLTILA-----QGCKRLVKLELSGCEGSFDGIKA--IGQCCQMLEELTFSDHRMDDGWLAALSYCEN 318 (483)
Q Consensus 247 ~~~~~~~~~~~-~~l~~l~-----~~~~~L~~L~L~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 318 (483)
. .++. .....+. ..+++|++|+++++... .+.. ....+++|+.|+++++.+.+.+. .+..+++
T Consensus 284 ~------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 284 R------GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp T------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred C------CCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 4 1443 1111111 23478888888887654 2222 33456778888777766543222 3344455
Q ss_pred CcEEEeccCCCCCCCCChHHHhcCCC--------------------------CccEEeccccccccHHHHHHHH------
Q 011541 319 LKTLRFVSCKKIDPSPGPDEYLGSCL--------------------------ALERLHLQKCQLRDKKGVRALF------ 366 (483)
Q Consensus 319 L~~L~l~~~~~~~~~~~l~~~~~~~~--------------------------~L~~L~L~~~~~~~~~~l~~l~------ 366 (483)
|++|++.++. ++. +...+..++ +|+.|++++|...+ .....+.
T Consensus 355 L~~L~L~~N~-l~~---lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~ 429 (636)
T 4eco_A 355 LASLNLAYNQ-ITE---IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTP 429 (636)
T ss_dssp ESEEECCSSE-EEE---CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSC
T ss_pred CCEEECCCCc-ccc---ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC-cchhhhccccccc
Confidence 5555554433 110 011122333 45555555543211 0000010
Q ss_pred hcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHH-HHHh-------cCcccceeeeecCCCCCccc
Q 011541 367 RVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLE-SVIL-------SWTDLQSLRVVSCKNIKDGE 438 (483)
Q Consensus 367 ~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~-~l~~-------~~~~L~~L~l~~c~~i~~~~ 438 (483)
-.+++|+.|+++++. ++.-.......+++|+.|+++++ .++ .+. .+.. ++++|+.|++++|. ++ .
T Consensus 430 ~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N-~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~ 502 (636)
T 4eco_A 430 FKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLT--EIPKNSLKDENENFKNTYLLTSIDLRFNK-LT--K 502 (636)
T ss_dssp CCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS-CCS--BCCSSSSEETTEECTTGGGCCEEECCSSC-CC--B
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC-CCC--CcCHHHhccccccccccCCccEEECcCCc-CC--c
Confidence 023466666666653 22222223445677777777766 444 111 1111 12277777777764 44 2
Q ss_pred hHHHHh-hhcccCcEEEeec
Q 011541 439 VSPALS-TLFSVLKELKWRP 457 (483)
Q Consensus 439 v~~~l~-~~~~~L~~L~~~~ 457 (483)
+...+. ..+++|++|.+..
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCS
T ss_pred cChhhhhccCCCcCEEECCC
Confidence 332232 2467788887765
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.31 E-value=1.7e-13 Score=145.13 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=91.1
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|+.|+++++.............+++|+.|+++++.+.......+..+++|+.|++.++.... .......+..+++
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRN 481 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC-TTCSSCTTTTCTT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc-cccCCcccccCCC
Confidence 345555555555543211000112234555555555554332222334455666666665544211 1112233456677
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHH--------HHHHHhcCCCCcEEEecCCCCCCHHHHHHHH
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDD--------IFRFADVFRRAKFLSLEGCSLVTTEGLESVI 417 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~--------~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~ 417 (483)
|+.|+++++.... .....+..+++|++|+++++. ++.. ....+..+++|+.|+++++ .++.-. ...+
T Consensus 482 L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~ 556 (680)
T 1ziw_A 482 LTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIP-VEVF 556 (680)
T ss_dssp CCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred CCEEECCCCCCCc--CChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCC-HHHc
Confidence 7777777664221 011123446777777777763 2211 0012456777888888776 554111 1123
Q ss_pred hcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 418 LSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 418 ~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
..+++|+.|+++++. ++. +.......+++|+.|.+..
T Consensus 557 ~~l~~L~~L~Ls~N~-l~~--l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 557 KDLFELKIIDLGLNN-LNT--LPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECTT
T ss_pred ccccCcceeECCCCC-CCc--CCHhHhCCCCCCCEEECCC
Confidence 467788888887753 543 2222234467788887764
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.31 E-value=3e-13 Score=146.69 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=39.0
Q ss_pred hcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhc
Q 011541 340 LGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILS 419 (483)
Q Consensus 340 ~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~ 419 (483)
+..+++|+.|+++++..... ....+..+++|++|+++++. ++......+..+++|+.|+++++ .++..... .+..
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~ 360 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKI--ADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKF 360 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEE--CTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSS-CSCS
T ss_pred hhcCCCCCEEECCCCcCCCC--ChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChh-hhcC
Confidence 34455566666655432110 00112335566666665552 22111122344556666666655 33211110 1234
Q ss_pred CcccceeeeecCC
Q 011541 420 WTDLQSLRVVSCK 432 (483)
Q Consensus 420 ~~~L~~L~l~~c~ 432 (483)
+++|+.|+++++.
T Consensus 361 l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 361 LEKLQTLDLRDNA 373 (844)
T ss_dssp CCCCCEEEEETCC
T ss_pred CCCCCEEECCCCC
Confidence 5566666666643
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=3.6e-14 Score=135.05 Aligned_cols=227 Identities=16% Similarity=0.051 Sum_probs=153.3
Q ss_pred CCCCCEEEeecCCccc--hHHhhcCCCCCEEEeecCCCCccccccChHHH-HHHHhcCCCCcEEEeeCCCCChHHHHHHH
Q 011541 213 CLTLQEFELHKCGDNV--LRGIAACENLQILKLVGNVEGFYNSTVSDIGL-TILAQGCKRLVKLELSGCEGSFDGIKAIG 289 (483)
Q Consensus 213 ~~~L~~L~l~~~~~~~--~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l-~~l~~~~~~L~~L~L~~~~~~~~~l~~l~ 289 (483)
.++|++|+++++.-.. ...+..+++|++|+++++. ++..+. ......+++|++|+++++....- ....
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l--~~~~ 97 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-------LSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNF 97 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------CCEEEEEEHHHHSCSCCCEEECCSCSEEEE--EEEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-------cCcccCcccccccccccCEEECCCCccccC--hhhc
Confidence 3689999999884322 3346789999999999886 442210 01123589999999999865321 1112
Q ss_pred HcCcCCCeeeeccccCcHHHH-HHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhc
Q 011541 290 QCCQMLEELTFSDHRMDDGWL-AALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRV 368 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 368 (483)
..+++|++|+++++.+..... ..+..+++|++|++.++.... .....+..+++|+.|+++++...+ .........
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~ 173 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTE 173 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE---CSTTTTTTCTTCCEEECTTCEEGG-GEECSCCTT
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc---cchhhcccCcCCCEEECCCCcccc-ccchhHHhh
Confidence 357899999999987543322 356788999999999876322 123446778999999999875322 112233456
Q ss_pred CccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcc
Q 011541 369 CEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFS 448 (483)
Q Consensus 369 ~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~ 448 (483)
+++|++|+++++ .+++.....+..+++|+.|+++++ .++...... +..+++|+.|++++|. ++..... .+....+
T Consensus 174 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~ 248 (306)
T 2z66_A 174 LRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPS 248 (306)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSC-CCBCSSS-SCCCCCT
T ss_pred CcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCC-CcccCHH-HHHhhhc
Confidence 889999999998 444443445678899999999998 554322111 3568999999999985 5443221 2223335
Q ss_pred cCcEEEeec
Q 011541 449 VLKELKWRP 457 (483)
Q Consensus 449 ~L~~L~~~~ 457 (483)
+|++|.+..
T Consensus 249 ~L~~L~L~~ 257 (306)
T 2z66_A 249 SLAFLNLTQ 257 (306)
T ss_dssp TCCEEECTT
T ss_pred cCCEEEccC
Confidence 899999875
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.31 E-value=2.1e-14 Score=148.89 Aligned_cols=247 Identities=17% Similarity=0.104 Sum_probs=141.0
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|++|++.++.-..+......+ +|++|++.+|.-.... ...+++|+.|.+.++.. ..... ...++
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~-------~~~~~---~~~~~ 347 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKG-------GNAFS---EVDLP 347 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBS-------CCBCC---CCBCT
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCcc-------ccccc---cccCC
Confidence 4577888888765322232233345 7778887776432211 14677788888877651 11000 04577
Q ss_pred CCcEEEeeCCCCChHH-HHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 269 RLVKLELSGCEGSFDG-IKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
+|++|+++++...... .......+++|+.|+++++.+...... +..+++|++|++.++.... . .....+..+++|+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~~~~l~~L~ 424 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ-M-SEFSVFLSLRNLI 424 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES-C-TTSCTTTTCTTCC
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc-c-cchhhhhcCCCCC
Confidence 8888888877654321 122334577888888887754322112 5567788888887765222 1 1112356677888
Q ss_pred EEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceee
Q 011541 348 RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLR 427 (483)
Q Consensus 348 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~ 427 (483)
.|++++|..... .......+++|++|++.+|...+......+..+++|+.|++++| .+++..... +..+++|+.|+
T Consensus 425 ~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~ 500 (570)
T 2z63_A 425 YLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLN 500 (570)
T ss_dssp EEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEE
T ss_pred EEeCcCCccccc--chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhh-hhcccCCCEEe
Confidence 888887753221 11223457788888887773221222234566778888888877 555322222 33677888888
Q ss_pred eecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 428 VVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 428 l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+++|. ++.... .....+++|+.|.+..
T Consensus 501 l~~n~-l~~~~~--~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 501 MASNQ-LKSVPD--GIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCSSC-CSCCCT--TTTTTCTTCCEEECCS
T ss_pred CCCCc-CCCCCH--HHhhcccCCcEEEecC
Confidence 88764 443211 1223467788887775
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=1.8e-13 Score=137.22 Aligned_cols=204 Identities=13% Similarity=0.041 Sum_probs=133.8
Q ss_pred cCCCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
.+++|++|+++++.-..+. ..+..+++|++|+++++. ......+..+++|++|+|+++. +....- ....
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------i~~~~~-~~~~ 157 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-------IESIPS-YAFN 157 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-------CCEECT-TTTT
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-------ccccCH-HHhh
Confidence 6789999999876322221 234568899999998874 2223457788999999999875 332111 1134
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+++++.............+++|+.|+++++.+... ..+..+++|++|+++++. ++.. ....+..+++
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~--~~~~~~~l~~ 232 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNH-LSAI--RPGSFQGLMH 232 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSC-CCEE--CTTTTTTCTT
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCc-cCcc--ChhhhccCcc
Confidence 5789999999886544331112234578899999998875431 235678899999998875 4321 1344677889
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCC
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLV 408 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~l 408 (483)
|+.|+++++.... .. ...+..+++|+.|+|+++ .++......+..+++|+.|+|++++..
T Consensus 233 L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQV-IE-RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCE-EC-TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeE-EC-hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999998875322 11 112345789999999887 444333334567889999999887433
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=6.2e-13 Score=127.95 Aligned_cols=239 Identities=12% Similarity=0.039 Sum_probs=162.1
Q ss_pred CccEEEEcCCChHHHHHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCC
Q 011541 192 NLRRLVVVGASEFGLLSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKR 269 (483)
Q Consensus 192 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (483)
+++.+++++..-..+.. ...+.|+.|+++++. ......+..+++|++|+++++. ++...... ...+++
T Consensus 32 ~l~~l~~~~~~l~~lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~-~~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-------ISKISPGA-FAPLVK 101 (330)
T ss_dssp ETTEEECTTSCCCSCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------CCCBCTTT-TTTCTT
T ss_pred CCeEEEecCCCccccCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-------CCeeCHHH-hcCCCC
Confidence 56777766432111111 124789999999884 3333468899999999999886 33321111 346899
Q ss_pred CcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEE
Q 011541 270 LVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERL 349 (483)
Q Consensus 270 L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 349 (483)
|++|+++++....-.. ...++|++|+++++.+.......+..+++|++|++.++.. +........+..+++|+.|
T Consensus 102 L~~L~Ls~n~l~~l~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 102 LERLYLSKNQLKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CCEEECCSSCCSBCCS----SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-CGGGBCTTGGGGCTTCCEE
T ss_pred CCEEECCCCcCCccCh----hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-CccCcChhhccCCCCcCEE
Confidence 9999999987532110 1237899999999987766667788999999999988763 2111123446779999999
Q ss_pred eccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeee
Q 011541 350 HLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVV 429 (483)
Q Consensus 350 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~ 429 (483)
+++++.... +. ....++|++|+++++ .+++.....+..+++|+.|+++++ .++..... .+..+++|+.|+++
T Consensus 177 ~l~~n~l~~---l~--~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 177 RIADTNITT---IP--QGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLN 248 (330)
T ss_dssp ECCSSCCCS---CC--SSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECC
T ss_pred ECCCCcccc---CC--ccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCceeChh-hccCCCCCCEEECC
Confidence 999875322 00 012378999999998 455443445678999999999998 66533222 23568999999999
Q ss_pred cCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 430 SCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 430 ~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+|. ++. +...+ ..+++|++|.+..
T Consensus 249 ~N~-l~~--lp~~l-~~l~~L~~L~l~~ 272 (330)
T 1xku_A 249 NNK-LVK--VPGGL-ADHKYIQVVYLHN 272 (330)
T ss_dssp SSC-CSS--CCTTT-TTCSSCCEEECCS
T ss_pred CCc-Ccc--CChhh-ccCCCcCEEECCC
Confidence 985 552 33223 4569999999974
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=5.2e-14 Score=142.72 Aligned_cols=241 Identities=14% Similarity=0.038 Sum_probs=159.6
Q ss_pred HHHhcCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHH
Q 011541 185 ALACGCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTIL 263 (483)
Q Consensus 185 ~l~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l 263 (483)
.+...+++|+.|+++++.-.++ ...+..+++|++|++++|.-.....+..+++|++|+|++|. +++..
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-------l~~l~---- 96 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-------VQELL---- 96 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-------EEEEE----
T ss_pred HhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-------CCCCC----
Confidence 3334556899999987643222 23346789999999998854333338889999999999885 44321
Q ss_pred HhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCC
Q 011541 264 AQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSC 343 (483)
Q Consensus 264 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 343 (483)
..++|++|++++|....... ..+++|+.|+++++.+.......+..+++|++|+++++. ++.. ....+...+
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~l~~~l 168 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV-NFAELAASS 168 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEE-EGGGGGGGT
T ss_pred --CCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCc-ChHHHhhhC
Confidence 34889999999887643311 235789999999888766555556778899999998876 4321 223334468
Q ss_pred CCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccc
Q 011541 344 LALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDL 423 (483)
Q Consensus 344 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L 423 (483)
++|+.|+|++|...+. .. ...+++|+.|+|+++. ++.... .+..+++|+.|+++++ .++. +...+..+++|
T Consensus 169 ~~L~~L~Ls~N~l~~~---~~-~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L 239 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDV---KG-QVVFAKLKTLDLSSNK-LAFMGP-EFQSAAGVTWISLRNN-KLVL--IEKALRFSQNL 239 (487)
T ss_dssp TTCCEEECTTSCCCEE---EC-CCCCTTCCEEECCSSC-CCEECG-GGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTC
T ss_pred CcccEEecCCCccccc---cc-cccCCCCCEEECCCCC-CCCCCH-hHcCCCCccEEEecCC-cCcc--cchhhccCCCC
Confidence 8999999998863332 11 1237889999998873 433212 2567889999999988 6652 22224467889
Q ss_pred ceeeeecCCCCCccchHHHHhhhcccCcEEEe
Q 011541 424 QSLRVVSCKNIKDGEVSPALSTLFSVLKELKW 455 (483)
Q Consensus 424 ~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~ 455 (483)
+.|++++++ +....+...+ ..++.|+.+.+
T Consensus 240 ~~L~l~~N~-l~c~~~~~~~-~~l~~L~~l~~ 269 (487)
T 3oja_A 240 EHFDLRGNG-FHCGTLRDFF-SKNQRVQTVAK 269 (487)
T ss_dssp CEEECTTCC-BCHHHHHHHH-TTCHHHHHHHH
T ss_pred CEEEcCCCC-CcCcchHHHH-HhCCCCcEEec
Confidence 999998876 5433344333 33566666655
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=3.1e-13 Score=135.93 Aligned_cols=202 Identities=15% Similarity=0.029 Sum_probs=121.7
Q ss_pred cCCCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 189 GCPNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
.+++|+.|+++++.-.++. ..+..+++|++|+++++. ......+..+++|++|+|+++. +..... ....
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~-~~~~ 168 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-------IESIPS-YAFN 168 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-------CCEECT-TTTT
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-------cceeCH-hHHh
Confidence 5678888888765322221 233467888888888773 2223346678888888888775 322111 1133
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+++++......-......+++|+.|+++++.+.+. ..+..+++|++|+++++. ++. .....+..+++
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~~l~~ 243 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNH-FPE--IRPGSFHGLSS 243 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSC-CSE--ECGGGGTTCTT
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCc-Ccc--cCcccccCccC
Confidence 5778888888876543321111233567888888887765432 235567788888887765 331 12345667788
Q ss_pred ccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 011541 346 LERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCS 406 (483)
Q Consensus 346 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~ 406 (483)
|+.|+++++.... .. ...+..+++|+.|+|+++ .++......+..+++|+.|+|++++
T Consensus 244 L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQVSL-IE-RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSCCCE-EC-TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCcCce-EC-HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 8888888765322 11 112345778888888877 3332222334567888888888774
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=1e-13 Score=132.66 Aligned_cols=220 Identities=15% Similarity=0.091 Sum_probs=153.8
Q ss_pred hcCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 188 CGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
..+++|+.|+++++.-.+... ...+++|++|+++++.-. .+...++|+.|+++++. ++... ...+
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~---~l~~~~~L~~L~l~~n~-------l~~~~----~~~~ 119 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNN-------ISRVS----CSRG 119 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE---EEEECTTCCEEECCSSC-------CSEEE----ECCC
T ss_pred hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc---cccCCCCcCEEECCCCc-------cCCcC----cccc
Confidence 377899999998764222222 457899999999987422 34456999999999886 44322 2346
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHh-hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAAL-SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
++|++|+++++......-. ....+++|+.|+++++.+.......+ ..+++|++|++.++. ++..+ ....+++|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~l~~L 193 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK----GQVVFAKL 193 (317)
T ss_dssp SSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE----CCCCCTTC
T ss_pred CCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc----cccccccC
Confidence 8899999999876432111 12346899999999988665433333 478999999999876 43211 12348899
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccccee
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSL 426 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L 426 (483)
+.|++++|....- ..-...+++|++|+++++. +.. +...+..+++|+.|+++++ .++...+...+..+++|+.|
T Consensus 194 ~~L~Ls~N~l~~l---~~~~~~l~~L~~L~L~~N~-l~~-l~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 194 KTLDLSSNKLAFM---GPEFQSAAGVTWISLRNNK-LVL-IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CEEECCSSCCCEE---CGGGGGGTTCSEEECTTSC-CCE-ECTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHH
T ss_pred CEEECCCCcCCcc---hhhhcccCcccEEECcCCc-ccc-hhhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEE
Confidence 9999999863321 1114458899999999984 432 2223567899999999998 77756676777789999999
Q ss_pred eeecCCCC
Q 011541 427 RVVSCKNI 434 (483)
Q Consensus 427 ~l~~c~~i 434 (483)
++.++..+
T Consensus 268 ~l~~~~~l 275 (317)
T 3o53_A 268 AKQTVKKL 275 (317)
T ss_dssp HHHHHHHH
T ss_pred ECCCchhc
Confidence 99866533
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=6.1e-12 Score=119.69 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=139.7
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|++|++.++.-..+. ....+++|++|+++++.-.....+..+++|++|+++++. +++.. ....++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-------l~~~~---~~~~l~ 107 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-------LKNVS---AIAGLQ 107 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-------CSCCG---GGTTCT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-------CCCch---hhcCCC
Confidence 3568999999876432222 245689999999998854444448899999999999886 44321 245689
Q ss_pred CCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccE
Q 011541 269 RLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALER 348 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 348 (483)
+|++|+++++....-. . ...+++|+.|+++++.+.+.. .+..+++|++|++.++. +++. .. +..+++|+.
T Consensus 108 ~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~-l~~~---~~-l~~l~~L~~ 177 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQ-VSDL---TP-LANLSKLTT 177 (308)
T ss_dssp TCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSC-CCCC---GG-GTTCTTCCE
T ss_pred CCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCc-CCCC---hh-hcCCCCCCE
Confidence 9999999998764321 1 456889999999998755432 27789999999999886 4432 22 778999999
Q ss_pred EeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC
Q 011541 349 LHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVT 409 (483)
Q Consensus 349 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt 409 (483)
|++++|...+... ...+++|++|+++++...... .+..+++|+.|+++++ .++
T Consensus 178 L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N-~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP----LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQ-TIT 230 (308)
T ss_dssp EECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEE-EEE
T ss_pred EECCCCccCcChh----hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCC-eee
Confidence 9999886333221 456899999999998543322 2678999999999988 454
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.27 E-value=1.8e-13 Score=148.42 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=38.0
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
+++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++|+.|+++++.... .. ...+..+++
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~l~~ 363 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGE--LYSSNFYGLPKVAYIDLQKNHIAI-IQ-DQTFKFLEK 363 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSC--CCSCSCSSCTTCCEEECCSCCCCC-CC-SSCSCSCCC
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCc--cCHHHhcCCCCCCEEECCCCCCCc-cC-hhhhcCCCC
Confidence 4555555555554433333344455556666555543 221 112223455566666665543111 00 001233556
Q ss_pred ccEEEccCC
Q 011541 372 VRELVFQDC 380 (483)
Q Consensus 372 L~~L~L~~~ 380 (483)
|+.|+++++
T Consensus 364 L~~L~Ls~N 372 (844)
T 3j0a_A 364 LQTLDLRDN 372 (844)
T ss_dssp CCEEEEETC
T ss_pred CCEEECCCC
Confidence 666666555
No 67
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=6.3e-11 Score=115.46 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=82.9
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHh-----hcCCCCcEEEeccCCCCCCCC--ChHHHh
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAAL-----SYCENLKTLRFVSCKKIDPSP--GPDEYL 340 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~--~l~~~~ 340 (483)
++|++|+|++|.....++..+...+++|++|+++++.+.+.....+ ...++|++|+|.+|. +++.. .+...+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHH
Confidence 4566666666655444555555555556666666665544433332 234667777776664 33210 122233
Q ss_pred cCCCCccEEeccccccccHHHHHHHH---hcCccccEEEccCCCCCCHHHH----HHHhcCCCCcEEEecCCCCCCHHHH
Q 011541 341 GSCLALERLHLQKCQLRDKKGVRALF---RVCEAVRELVFQDCWGLDDDIF----RFADVFRRAKFLSLEGCSLVTTEGL 413 (483)
Q Consensus 341 ~~~~~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~~d~~~----~~~~~~~~L~~L~l~~~~~lt~~~l 413 (483)
..+++|++|+|++|. +++.++..+. ..+++|++|+|++| .+++... ..+..+++|++|+|++| .+++.+.
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~ 256 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGR 256 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHH
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHH
Confidence 556677777777664 5555544433 34557777777776 4444422 22345677777777777 6777777
Q ss_pred HHHHh
Q 011541 414 ESVIL 418 (483)
Q Consensus 414 ~~l~~ 418 (483)
..+..
T Consensus 257 ~~L~~ 261 (372)
T 3un9_A 257 QVLRD 261 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.26 E-value=9.5e-14 Score=132.58 Aligned_cols=244 Identities=13% Similarity=0.043 Sum_probs=161.6
Q ss_pred CCccEEEEcCCChH---HHHHHHHhCCCCCEEEeec-CC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHH
Q 011541 191 PNLRRLVVVGASEF---GLLSVAEECLTLQEFELHK-CG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILA 264 (483)
Q Consensus 191 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~ 264 (483)
.+++.|+++++.-. .+......+++|++|++++ +. ......+..+++|++|+++++. ++..... ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------l~~~~p~-~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-------VSGAIPD-FL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-------CEEECCG-GG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-------eCCcCCH-HH
Confidence 57899999876432 2344556799999999984 42 3445678899999999999875 3311111 13
Q ss_pred hcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCC-CCcEEEeccCCCCCCCCChHHHhcCC
Q 011541 265 QGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCE-NLKTLRFVSCKKIDPSPGPDEYLGSC 343 (483)
Q Consensus 265 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~l~~~~~~~ 343 (483)
..+++|++|+++++..... +......+++|++|+++++.+.+.....+..++ +|++|++.++..... ....+..+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~---~~~~~~~l 197 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK---IPPTFANL 197 (313)
T ss_dssp GGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE---CCGGGGGC
T ss_pred hCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc---CChHHhCC
Confidence 4689999999998864321 111234578999999999887655556677777 999999988763211 12334445
Q ss_pred CCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccc
Q 011541 344 LALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDL 423 (483)
Q Consensus 344 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L 423 (483)
+ |+.|+++++.... ........+++|+.|+++++... ..... +..+++|++|+++++ .+++.... .+..+++|
T Consensus 198 ~-L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L 270 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNSLA-FDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKFL 270 (313)
T ss_dssp C-CSEEECCSSEEEE--CCGGGCCTTSCCSEEECCSSEEC-CBGGG-CCCCTTCCEEECCSS-CCEECCCG-GGGGCTTC
T ss_pred c-ccEEECcCCcccC--cCCHHHhcCCCCCEEECCCCcee-eecCc-ccccCCCCEEECcCC-cccCcCCh-HHhcCcCC
Confidence 5 9999999875332 12223345889999999987432 22111 567899999999988 55532222 24578899
Q ss_pred ceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 424 QSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 424 ~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+.|+++++. ++.. +... ..+++|+.+.+..
T Consensus 271 ~~L~Ls~N~-l~~~-ip~~--~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 271 HSLNVSFNN-LCGE-IPQG--GNLQRFDVSAYAN 300 (313)
T ss_dssp CEEECCSSE-EEEE-CCCS--TTGGGSCGGGTCS
T ss_pred CEEECcCCc-cccc-CCCC--ccccccChHHhcC
Confidence 999999975 4321 2211 3467777777764
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.25 E-value=1.5e-13 Score=132.32 Aligned_cols=247 Identities=17% Similarity=0.109 Sum_probs=149.4
Q ss_pred cCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 189 GCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
.+++|++|+++++.-.++ ......+++|++|+++++.-..... ...++|++|++.++. +..... .....+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~L~~L~l~~n~-------i~~~~~-~~~~~l 146 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNR-------IRKVPK-GVFSGL 146 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-SCCTTCCEEECCSSC-------CCCCCS-GGGSSC
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc-cccccCCEEECCCCc-------cCccCH-hHhCCC
Confidence 678899999886532222 2334568899999998874222111 122789999998875 332111 113467
Q ss_pred CCCcEEEeeCCCCChHHH-HHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 268 KRLVKLELSGCEGSFDGI-KAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
++|++|+++++.....+. ......+ +|+.|+++++.+... .. ...++|++|++.++. ++.. ....+..+++|
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~--~~~~~L~~L~l~~n~-i~~~--~~~~l~~l~~L 219 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PK--DLPETLNELHLDHNK-IQAI--ELEDLLRYSKL 219 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CS--SSCSSCSCCBCCSSC-CCCC--CTTSSTTCTTC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Cc--cccCCCCEEECCCCc-CCcc--CHHHhcCCCCC
Confidence 889999998887642211 1111222 788888888775431 10 123689999998775 3321 12345678899
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHh-----cCc
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVIL-----SWT 421 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~-----~~~ 421 (483)
+.|+++++.... .. ......+++|++|+++++. ++ .+...+..+++|+.|+++++ .++..+...+.. ..+
T Consensus 220 ~~L~L~~N~l~~-~~-~~~~~~l~~L~~L~L~~N~-l~-~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 220 YRLGLGHNQIRM-IE-NGSLSFLPTLRELHLDNNK-LS-RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp SCCBCCSSCCCC-CC-TTGGGGCTTCCEEECCSSC-CC-BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred CEEECCCCcCCc-CC-hhHhhCCCCCCEEECCCCc-Ce-ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 999998875322 11 1123458899999998874 33 22223677899999999988 666443332221 146
Q ss_pred ccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 422 DLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 422 ~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
.|+.|++.+++ +....+.+.....+++|+.+.+..
T Consensus 295 ~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 295 YYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC--
T ss_pred cccceEeecCc-ccccccCcccccccchhhhhhccc
Confidence 78999999876 443333333334567888887764
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=5.4e-13 Score=125.55 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=138.8
Q ss_pred CCCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 190 CPNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 190 ~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
.++|++|++++..-..+. .....+++|++|+++++. ......+..+++|++|+++++.. +...... ....
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~------l~~~~~~-~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ------LRSVDPA-TFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT------CCCCCTT-TTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC------ccccCHH-HhcC
Confidence 468899998865322221 234568899999998873 33345678899999999998740 1111111 1345
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
+++|++|+++++...... ......+++|+.|+++++.+.......+..+++|++|++.++. ++.. ....+..+++|
T Consensus 104 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L 179 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSV--PERAFRGLHSL 179 (285)
T ss_dssp CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEE--CTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-cccc--CHHHhcCcccc
Confidence 789999999988653221 1223457899999999887654444456788999999998875 4321 12346678999
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCC
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVT 409 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt 409 (483)
+.|+++++...+ .. ......+++|++|++.++ .+++.....+..+++|+.|++++++-..
T Consensus 180 ~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAH-VH-PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCE-EC-TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccc-cC-HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999885332 11 122345889999999998 4444444567889999999999984443
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=1.5e-11 Score=123.45 Aligned_cols=203 Identities=13% Similarity=0.021 Sum_probs=153.5
Q ss_pred hCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHc
Q 011541 212 ECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQC 291 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 291 (483)
.+++|++|+++++.-....++..+++|++|+++++. ++... ...+++|++|+++++...... ...
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-------l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~ 104 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-------ITTLD----LSQNTNLTYLACDSNKLTNLD----VTP 104 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-------CSCCC----CTTCTTCSEEECCSSCCSCCC----CTT
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc-------CCeEc----cccCCCCCEEECcCCCCceee----cCC
Confidence 578999999999854444578899999999999986 44432 456899999999998764432 346
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
+++|+.|+++++.+... .+..+++|++|++.++. ++.. .+..+++|+.|++++|..++... ...+++
T Consensus 105 l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~-l~~l-----~l~~l~~L~~L~l~~n~~~~~~~----~~~l~~ 171 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNT-LTEI-----DVSHNTQLTELDCHLNKKITKLD----VTPQTQ 171 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSC-CSCC-----CCTTCTTCCEEECTTCSCCCCCC----CTTCTT
T ss_pred CCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCc-ccee-----ccccCCcCCEEECCCCCcccccc----cccCCc
Confidence 88999999999886552 17789999999999876 4421 15678999999999986554321 345889
Q ss_pred ccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCc
Q 011541 372 VRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLK 451 (483)
Q Consensus 372 L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~ 451 (483)
|++|+++++.. +.- . +..+++|+.|+++++ .++... +..+++|+.|+++++. ++... ...+++|+
T Consensus 172 L~~L~ls~n~l-~~l--~-l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~-l~~ip-----~~~l~~L~ 236 (457)
T 3bz5_A 172 LTTLDCSFNKI-TEL--D-VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNK-LTEID-----VTPLTQLT 236 (457)
T ss_dssp CCEEECCSSCC-CCC--C-CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCC-----CTTCTTCS
T ss_pred CCEEECCCCcc-cee--c-cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCc-ccccC-----ccccCCCC
Confidence 99999999843 321 1 678899999999998 665432 4578999999999975 65532 24578888
Q ss_pred EEEeec
Q 011541 452 ELKWRP 457 (483)
Q Consensus 452 ~L~~~~ 457 (483)
.|.+..
T Consensus 237 ~L~l~~ 242 (457)
T 3bz5_A 237 YFDCSV 242 (457)
T ss_dssp EEECCS
T ss_pred EEEeeC
Confidence 888874
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=1.3e-13 Score=131.68 Aligned_cols=205 Identities=15% Similarity=0.054 Sum_probs=134.5
Q ss_pred cCCCCCEEEeecCCCCccccccChHHHHHH-HhcCCCCcEEEeeCCCCChH--HHHHHHH-cCcCCCeeeeccccCcHHH
Q 011541 234 ACENLQILKLVGNVEGFYNSTVSDIGLTIL-AQGCKRLVKLELSGCEGSFD--GIKAIGQ-CCQMLEELTFSDHRMDDGW 309 (483)
Q Consensus 234 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~~~~~~~--~l~~l~~-~~~~L~~L~l~~~~~~~~~ 309 (483)
.+++|++|+|+++. +++.....+ ...+++|++|+++++..... .+..+.. ..++|+.|+++++.+....
T Consensus 93 ~l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLE-------VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEB-------CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CcCCccEEEccCCc-------ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 68999999999886 332211111 25688999999999876433 2333222 1378999999998876555
Q ss_pred HHHhhcCCCCcEEEeccCCCCCCCCChHHHh--cCCCCccEEeccccccccHH-HHHHHHhcCccccEEEccCCCCCCHH
Q 011541 310 LAALSYCENLKTLRFVSCKKIDPSPGPDEYL--GSCLALERLHLQKCQLRDKK-GVRALFRVCEAVRELVFQDCWGLDDD 386 (483)
Q Consensus 310 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~~d~ 386 (483)
...+..+++|++|+++++..... ..+.... ..+++|++|++++|...... ....++..+++|++|+++++. +.+.
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGE-RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHH-HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred HHHhccCCCCCEEECCCCCcCcc-hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence 55677899999999988763221 0112222 67899999999998644322 233555678999999999884 3332
Q ss_pred H-HHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 387 I-FRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 387 ~-~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
. ......+++|+.|+++++ .++ .+..-+ .++|+.|+++++. ++... . ...+++|++|.+..
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N-~l~--~ip~~~--~~~L~~L~Ls~N~-l~~~p---~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFT-GLK--QVPKGL--PAKLSVLDLSYNR-LDRNP---S-PDELPQVGNLSLKG 305 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTS-CCS--SCCSSC--CSEEEEEECCSSC-CCSCC---C-TTTSCEEEEEECTT
T ss_pred cchhhhhhcCCCCEEECCCC-ccC--hhhhhc--cCCceEEECCCCC-CCCCh---h-HhhCCCCCEEeccC
Confidence 2 223345789999999988 665 111111 1689999999975 65432 1 24567888877764
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.23 E-value=1.9e-13 Score=131.70 Aligned_cols=242 Identities=13% Similarity=0.052 Sum_probs=159.0
Q ss_pred CCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 190 CPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 190 ~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
.++|+.|+++++.-..+ ......+++|++|+++++. ......+..+++|++|+++++. ++... ...
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~----~~~ 121 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-------LVEIP----PNL 121 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-------CCSCC----SSC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-------CCccC----ccc
Confidence 36899999987642222 1234678999999999884 3335678899999999999886 33211 012
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcH--HHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCC
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDD--GWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCL 344 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 344 (483)
.++|++|+++++...... ......+++|+.|+++++.+.. .....+..+ +|++|++.++. ++..+ . .-.+
T Consensus 122 ~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~---~--~~~~ 193 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP---K--DLPE 193 (332)
T ss_dssp CTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC---S--SSCS
T ss_pred cccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC---c--cccC
Confidence 378999999998654221 1123467899999999987643 222334444 89999998876 33211 1 1237
Q ss_pred CccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccc
Q 011541 345 ALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQ 424 (483)
Q Consensus 345 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~ 424 (483)
+|+.|+++++.... ... .....+++|+.|+++++ .+.+.....+..+++|+.|+++++ .++ .+..-+..+++|+
T Consensus 194 ~L~~L~l~~n~i~~-~~~-~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 194 TLNELHLDHNKIQA-IEL-EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLS--RVPAGLPDLKLLQ 267 (332)
T ss_dssp SCSCCBCCSSCCCC-CCT-TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCC--BCCTTGGGCTTCC
T ss_pred CCCEEECCCCcCCc-cCH-HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCe--ecChhhhcCccCC
Confidence 89999999875322 111 12345889999999998 444333334678999999999998 665 2222245789999
Q ss_pred eeeeecCCCCCccchHHHHhh-----hcccCcEEEeecC
Q 011541 425 SLRVVSCKNIKDGEVSPALST-----LFSVLKELKWRPD 458 (483)
Q Consensus 425 ~L~l~~c~~i~~~~v~~~l~~-----~~~~L~~L~~~~~ 458 (483)
.|+++++. ++..... .+.. .++.|+.|.+...
T Consensus 268 ~L~l~~N~-l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 268 VVYLHTNN-ITKVGVN-DFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp EEECCSSC-CCBCCTT-SSSCSSCCSSSCCBSEEECCSS
T ss_pred EEECCCCC-CCccChh-HccccccccccccccceEeecC
Confidence 99999975 6554332 1111 1467888888753
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=2.1e-12 Score=120.59 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=95.0
Q ss_pred CCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcC
Q 011541 213 CLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCC 292 (483)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 292 (483)
+++|++|++.++.-....++..+++|++|+++++. +.+.. ....+++|++|+++++...... ......+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-------l~~~~---~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l 108 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-------LHDIS---ALKELTNLTYLILTGNQLQSLP-NGVFDKL 108 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-------CCCCG---GGTTCTTCCEEECTTSCCCCCC-TTTTTTC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCC-------CCCch---hhcCCCCCCEEECCCCccCccC-hhHhcCC
Confidence 56677777776654445556677777777777664 33211 1335667777777766543111 1112345
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++|+.|++++|...+ ........+++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L 183 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQS--LPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCc--cCHHHhccCccCCEEECCCCCcCc--cCHHHhcCCccC
Confidence 666666666665443333345566777777776664 332 112334566777777777664221 001122345666
Q ss_pred cEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
+.|++.++. +.......+..+++|+.|+++++
T Consensus 184 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 184 KDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 666666652 22222223455666667766666
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=3e-13 Score=140.21 Aligned_cols=223 Identities=14% Similarity=0.069 Sum_probs=156.3
Q ss_pred CccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHH-HHHHHhcCCCC
Q 011541 192 NLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIG-LTILAQGCKRL 270 (483)
Q Consensus 192 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~-l~~l~~~~~~L 270 (483)
+|++|++.++.-..+.. ..+++|++|++.++..........+++|+.|+++++. ++... .......+++|
T Consensus 305 ~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-------LSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-------CBEEEEEEHHHHTCSCC
T ss_pred CccEEeeccCcccccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCc-------cCccccccccccccCcc
Confidence 89999998763222221 3689999999998854333333789999999999886 33221 01123468999
Q ss_pred cEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHH-HHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEE
Q 011541 271 VKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWL-AALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERL 349 (483)
Q Consensus 271 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 349 (483)
++|++++|........ ...+++|+.|+++++....... ..+..+++|++|++.+|.... .....+..+++|+.|
T Consensus 376 ~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 376 KYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---AFNGIFNGLSSLEVL 450 (570)
T ss_dssp CEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE---CCTTTTTTCTTCCEE
T ss_pred CEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc---cchhhhhcCCcCcEE
Confidence 9999999875322111 3458899999999987543322 346788999999999886332 123456789999999
Q ss_pred eccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeee
Q 011541 350 HLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVV 429 (483)
Q Consensus 350 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~ 429 (483)
++++|... +..+......+++|++|++++| .+++.....+..+++|+.|+++++ .++.... ..+..+++|+.|+++
T Consensus 451 ~l~~n~l~-~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 451 KMAGNSFQ-ENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPD-GIFDRLTSLQKIWLH 526 (570)
T ss_dssp ECTTCEEG-GGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECC
T ss_pred ECcCCcCc-cccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCH-HHhhcccCCcEEEec
Confidence 99998632 1122233456899999999998 455444445678999999999998 6653322 234578999999999
Q ss_pred cCC
Q 011541 430 SCK 432 (483)
Q Consensus 430 ~c~ 432 (483)
+++
T Consensus 527 ~N~ 529 (570)
T 2z63_A 527 TNP 529 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 976
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.20 E-value=6.8e-12 Score=129.77 Aligned_cols=105 Identities=14% Similarity=-0.028 Sum_probs=65.6
Q ss_pred cCCCccEEEEcCCChHHH-HHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 189 GCPNLRRLVVVGASEFGL-LSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
.+++|++|+++++.-.++ ...+..+++|++|+++++.-...... .+++|++|+++++. ++..........+
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~-------l~~l~~p~~~~~l 145 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFND-------FDVLPVCKEFGNL 145 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSC-------CSBCCCCGGGGGC
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCC-------ccccCchHhhccc
Confidence 678888888886633222 23345678888888888743222222 68888888888875 3332211123457
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCC--CeeeeccccC
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQML--EELTFSDHRM 305 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~ 305 (483)
++|++|+++++......+. .+++| +.|+++++.+
T Consensus 146 ~~L~~L~L~~n~l~~~~~~----~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 146 TKLTFLGLSAAKFRQLDLL----PVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTCCEEEEECSBCCTTTTG----GGTTSCEEEEEEEESSC
T ss_pred CcccEEecCCCccccCchh----hhhhceeeEEEeecccc
Confidence 8888998888765443222 23445 8888887654
No 77
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=8.6e-11 Score=114.50 Aligned_cols=165 Identities=16% Similarity=0.091 Sum_probs=96.5
Q ss_pred CCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH----cCcCCCeeeeccccCcHHHH-
Q 011541 236 ENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ----CCQMLEELTFSDHRMDDGWL- 310 (483)
Q Consensus 236 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~- 310 (483)
.+|+.|+|++|. +++.++..++..+++|++|+|++|.....+...++. .+++|++|++++|.+.+...
T Consensus 101 ~~L~~L~Ls~n~-------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQ-------LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCC-------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH
T ss_pred CCceEEEecCCC-------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH
Confidence 566666666664 666666666666667777777777665555444433 34667777777776554333
Q ss_pred ---HHhhcCCCCcEEEeccCCCCCCCC--ChHHHhcCCCCccEEeccccccccHHHHHHHHh---cCccccEEEccCCCC
Q 011541 311 ---AALSYCENLKTLRFVSCKKIDPSP--GPDEYLGSCLALERLHLQKCQLRDKKGVRALFR---VCEAVRELVFQDCWG 382 (483)
Q Consensus 311 ---~~l~~~~~L~~L~l~~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~~~ 382 (483)
..+..+++|++|+|+++. +++.. .+...+..+++|+.|+|++|. +++.+...+.. .+++|++|+|+++ .
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~ 250 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN-E 250 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS-S
T ss_pred HHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC-C
Confidence 234567778888887765 43311 123334566778888888764 55555544433 4677888888887 4
Q ss_pred CCHHHHHHHhcCC--C---CcEEE--ecCCCCCCHH
Q 011541 383 LDDDIFRFADVFR--R---AKFLS--LEGCSLVTTE 411 (483)
Q Consensus 383 ~~d~~~~~~~~~~--~---L~~L~--l~~~~~lt~~ 411 (483)
+++.....+.... . |+.+. +.++ .+++.
T Consensus 251 i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp CCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred CCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHH
Confidence 6665554443321 1 56665 4443 44433
No 78
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=8.9e-11 Score=103.84 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=73.8
Q ss_pred hCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHc
Q 011541 212 ECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQC 291 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 291 (483)
.+++|++|+++++.-....++..+++|++|++.+|. +.+.. ....+++|++|+++++.........+ ..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-------~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l-~~ 110 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-------ATNYN---PISGLSNLERLRIMGKDVTSDKIPNL-SG 110 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-------CSCCG---GGTTCTTCCEEEEECTTCBGGGSCCC-TT
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-------CCcch---hhhcCCCCCEEEeECCccCcccChhh-cC
Confidence 355677777776643333356677777777777664 32221 13346777777777765543222222 23
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
+++|+.|+++++.+.+.....+..+++|++|++.+|..+++. . .+..+++|+.|++++|.
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~---~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI---M-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC---G-GGGGCSSCCEEECTTBC
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc---H-hhcCCCCCCEEECCCCC
Confidence 566666666666655545555666677777777666534321 1 34556666666666653
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=5.6e-12 Score=120.23 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=137.9
Q ss_pred hCCCCCEEEeecCCc--cchHHh--hcCCCCCEEEeecCCCCccccccChH--HHHHHHh-cCCCCcEEEeeCCCCChHH
Q 011541 212 ECLTLQEFELHKCGD--NVLRGI--AACENLQILKLVGNVEGFYNSTVSDI--GLTILAQ-GCKRLVKLELSGCEGSFDG 284 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~--~~~~~i--~~~~~L~~L~L~~~~~~~~~~~~~~~--~l~~l~~-~~~~L~~L~L~~~~~~~~~ 284 (483)
.+++|++|+++++.- .....+ ..+++|++|+|+++. ++.. .+..+.. ..++|++|+++++......
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-------WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-------CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-------CcchhHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 589999999998842 233444 789999999999986 4332 2222221 2389999999998754322
Q ss_pred HHHHHHcCcCCCeeeeccccCcHH--HHHHh--hcCCCCcEEEeccCCCCCCCCC-hHHHhcCCCCccEEeccccccccH
Q 011541 285 IKAIGQCCQMLEELTFSDHRMDDG--WLAAL--SYCENLKTLRFVSCKKIDPSPG-PDEYLGSCLALERLHLQKCQLRDK 359 (483)
Q Consensus 285 l~~l~~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~ 359 (483)
.. ....+++|+.|+++++...+. ....+ ..+++|++|++.++. ++.... .......+++|+.|+++++...+.
T Consensus 166 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 166 CE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred HH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 11 223578999999999985543 33344 788999999999886 432111 123456789999999999863331
Q ss_pred HHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCc
Q 011541 360 KGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKD 436 (483)
Q Consensus 360 ~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~ 436 (483)
. .......+++|++|+++++. ++ .+...+ .++|+.|+++++ .+++. .. +..+++|+.|++++.+ +++
T Consensus 244 ~-~~~~~~~l~~L~~L~Ls~N~-l~-~ip~~~--~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~-l~~ 310 (312)
T 1wwl_A 244 A-GAPSCDWPSQLNSLNLSFTG-LK-QVPKGL--PAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNP-FLD 310 (312)
T ss_dssp C-CCSCCCCCTTCCEEECTTSC-CS-SCCSSC--CSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCT-TTC
T ss_pred c-chhhhhhcCCCCEEECCCCc-cC-hhhhhc--cCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCC-CCC
Confidence 1 01122346899999999984 33 111111 178999999998 67644 22 5578999999999865 554
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.3e-11 Score=125.02 Aligned_cols=214 Identities=17% Similarity=0.118 Sum_probs=149.8
Q ss_pred hCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHH
Q 011541 212 ECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIG 289 (483)
Q Consensus 212 ~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~ 289 (483)
.+++|++|+++++. ......+..+++|++|+|++|. +++..- ...+++|++|++++|....-.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~---l~~l~~L~~L~Ls~N~l~~l~----- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------LYETLD---LESLSTLRTLDLNNNYVQELL----- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-------CEEEEE---CTTCTTCCEEECCSSEEEEEE-----
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-------CCCCcc---cccCCCCCEEEecCCcCCCCC-----
Confidence 45589999999984 3344678899999999999986 332111 456899999999998643211
Q ss_pred HcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcC
Q 011541 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVC 369 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 369 (483)
..++|+.|+++++.+.... ...+++|++|++.++. ++. .....+..+++|+.|+++++...+ .....+...+
T Consensus 97 -~~~~L~~L~L~~N~l~~~~---~~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l 168 (487)
T 3oja_A 97 -VGPSIETLHAANNNISRVS---CSRGQGKKNIYLANNK-ITM--LRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASS 168 (487)
T ss_dssp -ECTTCCEEECCSSCCCCEE---ECCCSSCEEEECCSSC-CCS--GGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGT
T ss_pred -CCCCcCEEECcCCcCCCCC---ccccCCCCEEECCCCC-CCC--CCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhC
Confidence 2389999999998755422 1356899999999876 432 123345678999999999985332 2233444468
Q ss_pred ccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhccc
Q 011541 370 EAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSV 449 (483)
Q Consensus 370 ~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~ 449 (483)
++|+.|+|+++.. +.. .....+++|+.|+++++ .++..... +..+++|+.|+++++. ++. +... ...+++
T Consensus 169 ~~L~~L~Ls~N~l-~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~--lp~~-l~~l~~ 238 (487)
T 3oja_A 169 DTLEHLNLQYNFI-YDV--KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK-LVL--IEKA-LRFSQN 238 (487)
T ss_dssp TTCCEEECTTSCC-CEE--ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-CCE--ECTT-CCCCTT
T ss_pred CcccEEecCCCcc-ccc--cccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-Ccc--cchh-hccCCC
Confidence 9999999999843 322 11235899999999998 66632111 4578999999999975 553 3322 234689
Q ss_pred CcEEEeecC
Q 011541 450 LKELKWRPD 458 (483)
Q Consensus 450 L~~L~~~~~ 458 (483)
|+.|.+..+
T Consensus 239 L~~L~l~~N 247 (487)
T 3oja_A 239 LEHFDLRGN 247 (487)
T ss_dssp CCEEECTTC
T ss_pred CCEEEcCCC
Confidence 999998753
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=3.1e-11 Score=114.94 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=128.0
Q ss_pred CCCCEEEeecCCc--cchH---HhhcCCCCCEEEeecCCCCccccccChHHHHHHH-hcCCCCcEEEeeCCCCChH--HH
Q 011541 214 LTLQEFELHKCGD--NVLR---GIAACENLQILKLVGNVEGFYNSTVSDIGLTILA-QGCKRLVKLELSGCEGSFD--GI 285 (483)
Q Consensus 214 ~~L~~L~l~~~~~--~~~~---~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~--~l 285 (483)
..++.|.+..+.- .... ....+++|++|+++++. +.......+. ..+++|++|+++++..... .+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-------ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-------CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-------eccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 3577788777632 1111 12245678888888775 3222111111 4567888888888775432 11
Q ss_pred --HHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChH--HHhcCCCCccEEeccccccccHHH
Q 011541 286 --KAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPD--EYLGSCLALERLHLQKCQLRDKKG 361 (483)
Q Consensus 286 --~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~~~~~~~ 361 (483)
..+. .+++|+.|+++++.+.......+..+++|++|+++++....+ .++. .....+++|++|++++|.......
T Consensus 137 ~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 137 AELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGE-RGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp HHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHH-HHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred HHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccc-hhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 1222 577888888888776554445566778888888887653221 0111 112467788888888875432222
Q ss_pred -HHHHHhcCccccEEEccCCCCCCHHHHHHHhc---CCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCcc
Q 011541 362 -VRALFRVCEAVRELVFQDCWGLDDDIFRFADV---FRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDG 437 (483)
Q Consensus 362 -l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~---~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~ 437 (483)
...+...+++|++|+++++. +.+.....+.. +++|++|+++++ .++ .+.. .-.++|+.|+++++. ++..
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~--~lp~--~~~~~L~~L~Ls~N~-l~~~ 287 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLE--QVPK--GLPAKLRVLDLSSNR-LNRA 287 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCC--SCCS--CCCSCCSCEECCSCC-CCSC
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCC--chhh--hhcCCCCEEECCCCc-CCCC
Confidence 22344567888888888874 33221111222 368888888877 555 1111 113688888888865 5542
Q ss_pred chHHHHhhhcccCcEEEeec
Q 011541 438 EVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 438 ~v~~~l~~~~~~L~~L~~~~ 457 (483)
.. ...+++|+.|.+..
T Consensus 288 ~~----~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 288 PQ----PDELPEVDNLTLDG 303 (310)
T ss_dssp CC----TTSCCCCSCEECSS
T ss_pred ch----hhhCCCccEEECcC
Confidence 22 13457777776653
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=8e-12 Score=119.01 Aligned_cols=204 Identities=14% Similarity=0.051 Sum_probs=100.8
Q ss_pred CCCCCEEEeecCC--ccchHHh--hcCCCCCEEEeecCCCCccccccCh----HHHHHHHhcCCCCcEEEeeCCCCChHH
Q 011541 213 CLTLQEFELHKCG--DNVLRGI--AACENLQILKLVGNVEGFYNSTVSD----IGLTILAQGCKRLVKLELSGCEGSFDG 284 (483)
Q Consensus 213 ~~~L~~L~l~~~~--~~~~~~i--~~~~~L~~L~L~~~~~~~~~~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~~~ 284 (483)
+++|++|+++++. ......+ ..+++|++|+|+++. ++. .....+ ..+++|++|+++++......
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-------WATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-------CSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-------ccchhhhhHHHHh-hhccCCCEEEeeCCCcchhh
Confidence 3556777766653 2222333 556667777776664 322 111111 24666777777666542111
Q ss_pred HHHHHHcCcCCCeeeeccccCcHH-HH-H--HhhcCCCCcEEEeccCCCCCCCCCh-HHHhcCCCCccEEeccccccccH
Q 011541 285 IKAIGQCCQMLEELTFSDHRMDDG-WL-A--ALSYCENLKTLRFVSCKKIDPSPGP-DEYLGSCLALERLHLQKCQLRDK 359 (483)
Q Consensus 285 l~~l~~~~~~L~~L~l~~~~~~~~-~~-~--~l~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~ 359 (483)
......+++|+.|+++++..... .. . .+..+++|++|+++++. ++..+.. ..+...+++|++|+++++...+.
T Consensus 162 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 162 -CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp -TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred -HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 11122456677777776653321 11 1 12356667777776654 3211010 11235566777777766642221
Q ss_pred HHHHHHHh--cCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCc
Q 011541 360 KGVRALFR--VCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKD 436 (483)
Q Consensus 360 ~~l~~l~~--~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~ 436 (483)
....+.. .+++|++|+++++. ++ .+.. .-+++|+.|+++++ .++.. . ....+++|+.|++++.+ +++
T Consensus 240 -~p~~~~~~~~~~~L~~L~Ls~N~-l~-~lp~--~~~~~L~~L~Ls~N-~l~~~--~-~~~~l~~L~~L~L~~N~-l~~ 308 (310)
T 4glp_A 240 -VNPSAPRCMWSSALNSLNLSFAG-LE-QVPK--GLPAKLRVLDLSSN-RLNRA--P-QPDELPEVDNLTLDGNP-FLV 308 (310)
T ss_dssp -CCSCCSSCCCCTTCCCEECCSSC-CC-SCCS--CCCSCCSCEECCSC-CCCSC--C-CTTSCCCCSCEECSSTT-TSC
T ss_pred -chhhHHhccCcCcCCEEECCCCC-CC-chhh--hhcCCCCEEECCCC-cCCCC--c-hhhhCCCccEEECcCCC-CCC
Confidence 0000111 12567777776663 22 1111 11367888888777 55531 1 13466788888887754 554
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=1.9e-10 Score=108.30 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=82.8
Q ss_pred CCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcC
Q 011541 213 CLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCC 292 (483)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 292 (483)
+++|++|+++++.-....++..+++|+.|+++++. +++... ...+++|+.|+++++....- .. ...+
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-------l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-------LTDIKP---LANLKNLGWLFLDENKVKDL--SS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-------CCCCGG---GTTCTTCCEEECCSSCCCCG--GG-GTTC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-------cCCCcc---cccCCCCCEEECCCCcCCCC--hh-hccC
Confidence 45666776666643334456667777777777664 333211 34566677777766654321 11 2334
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
++|+.|+++++.+.+. ..+..+++|++|++.++. ++. + ..+..+++|+.|++++|...+... ...+++|
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~-l~~---~-~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L 180 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK-ITD---I-TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKL 180 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSC-CCC---C-GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCc-CCc---c-hhhccCCCCCEEEccCCccccchh----hcCCCcc
Confidence 5555555555543331 234455666666665554 221 1 234455566666666553222111 3335555
Q ss_pred cEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
++|+++++. +++. ..+..+++|+.|+++++
T Consensus 181 ~~L~L~~N~-i~~l--~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 181 QNLYLSKNH-ISDL--RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCSSC-CCBC--GGGTTCTTCSEEEEEEE
T ss_pred CEEECCCCc-CCCC--hhhccCCCCCEEECcCC
Confidence 555555552 2221 12445555555555554
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=1.3e-10 Score=102.77 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=113.2
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|++|+++++.-..+. ....+++|++|++++|.......+..+++|++|+++++. +++..... ...++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~-l~~l~ 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD-------VTSDKIPN-LSGLT 112 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTT-------CBGGGSCC-CTTCT
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCc-------cCcccChh-hcCCC
Confidence 4568999999876332323 356789999999999966666788899999999999986 55433322 33589
Q ss_pred CCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc-CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 269 RLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR-MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
+|++|++++|.........+ ..+++|++|+++++. +.+. ..+..+++|++|++.+|. +++. . .+..+++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~-i~~~---~-~l~~l~~L~ 184 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDG-VHDY---R-GIEDFPKLN 184 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBC-CCCC---T-TGGGCSSCC
T ss_pred CCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCC-CcCh---H-HhccCCCCC
Confidence 99999999998765445444 458999999999986 5543 257889999999999886 4432 2 467789999
Q ss_pred EEeccccc
Q 011541 348 RLHLQKCQ 355 (483)
Q Consensus 348 ~L~L~~~~ 355 (483)
.|+++++.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 99999875
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.06 E-value=2.8e-10 Score=118.04 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCccc
Q 011541 344 LALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDL 423 (483)
Q Consensus 344 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L 423 (483)
++|+.|++++|...+ +...+++|+.|+++++. ++. + ...+++|+.|++++| .++ .+...+..+++|
T Consensus 221 ~~L~~L~Ls~N~L~~------lp~~l~~L~~L~Ls~N~-L~~-l---p~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTS------LPVLPSELKELMVSGNR-LTS-L---PMLPSGLLSLSVYRN-QLT--RLPESLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSC------CCCCCTTCCEEECCSSC-CSC-C---CCCCTTCCEEECCSS-CCC--SCCGGGGGSCTT
T ss_pred CCCCEEEccCCccCc------CCCCCCcCcEEECCCCC-CCc-C---CcccccCcEEeCCCC-CCC--cCCHHHhhcccc
Confidence 455666655543221 11334556666665552 211 0 013455666666655 444 111223345566
Q ss_pred ceeeeecCC
Q 011541 424 QSLRVVSCK 432 (483)
Q Consensus 424 ~~L~l~~c~ 432 (483)
+.|+|++++
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 666666544
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.05 E-value=1.2e-11 Score=115.51 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=130.9
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|+.|.+.++.-..+.. ...+++|++|+++++.-.....+..+++|++|+++++. ++.... .....++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-------l~~~~~-~~~~~l~ 109 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-------LQSLPN-GVFDKLT 109 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-------CCCCCT-TTTTTCT
T ss_pred cccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-------cCccCh-hHhcCCc
Confidence 45789999998653222222 35689999999998865555678899999999999885 332211 1134578
Q ss_pred CCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccE
Q 011541 269 RLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALER 348 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 348 (483)
+|++|+++++...... ......+++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++|+.
T Consensus 110 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 110 NLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQS--LPEGVFDKLTQLKD 185 (272)
T ss_dssp TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCc--cCHHHhcCCccCCE
Confidence 9999999988754221 1123457899999999987664444456788999999999886 442 22344678899999
Q ss_pred EeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecC
Q 011541 349 LHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEG 404 (483)
Q Consensus 349 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~ 404 (483)
|++++|...+ ........+++|+.|++.++... ..|++|+.|++.+
T Consensus 186 L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 186 LRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI 231 (272)
T ss_dssp EECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHH
T ss_pred EECCCCcCCc--cCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHH
Confidence 9999885332 11123355889999999988433 2355555555443
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=2.4e-10 Score=118.38 Aligned_cols=166 Identities=19% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcC
Q 011541 213 CLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCC 292 (483)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 292 (483)
+++|+.|+++++.-.....+..+++|+.|+|++|. +.+... ...+++|+.|+|++|..... . ....+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-------l~~~~~---l~~l~~L~~L~Ls~N~l~~l--~-~l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-------LTDIKP---LTNLKNLGWLFLDENKIKDL--S-SLKDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-------CCCCGG---GGGCTTCCEEECCSSCCCCC--T-TSTTC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-------CCCChh---hccCCCCCEEECcCCCCCCC--h-hhccC
Confidence 34555555555433333345555555555555553 222111 23455555555555543211 0 11234
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
++|+.|+++++.+.+. ..+..+++|+.|+|+++. ++. + ..+..+++|+.|+|++|....... ...+++|
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~-l~~---l-~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L 177 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK-ITD---I-TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKL 177 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSC-CCC---C-GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTC
T ss_pred CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCc-cCC---c-hhhcccCCCCEEECcCCcCCCchh----hccCCCC
Confidence 4555555555543321 234455666666665554 221 1 234455566666666553222111 3345556
Q ss_pred cEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
+.|+|++|. +.+. ..+..+++|+.|+|+++
T Consensus 178 ~~L~Ls~N~-i~~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 178 QNLYLSKNH-ISDL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CEEECCSSC-CCBC--GGGTTCTTCSEEECCSE
T ss_pred CEEECcCCC-CCCC--hHHccCCCCCEEEccCC
Confidence 666665552 2221 22445556666666555
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.03 E-value=3.6e-11 Score=112.40 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=62.9
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccccccc--HHHHHHHHhcC
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRD--KKGVRALFRVC 369 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~ 369 (483)
+++|+.|++.++.+.......+..+++|++|++.++. ++.. .+...+..+++|++|++++|...+ ...+..+.. +
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L 175 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-M 175 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-C
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCc-ccee-cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-c
Confidence 3444444444443222111124456667777776654 2211 123345556677777776654221 112222211 2
Q ss_pred cccc-EEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 370 EAVR-ELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 370 ~~L~-~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
+.|. +|+++++. +...... .....+|+.|+++++ .++... ..++..+++|+.|++++++
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~~-~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQPG-AFKEIRLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTCCEEEECCSSC-CCEECTT-SSCSCCEEEEECCSS-CCSCCC-TTTTTTCCSCCEEECCSSC
T ss_pred cccceeeecCCCc-ccccCcc-ccCCCcccEEECCCC-ceeecC-HhHhcccccccEEEccCCc
Confidence 3333 66666653 2211111 112336777777776 454221 1223456777788877654
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.01 E-value=8.4e-10 Score=114.47 Aligned_cols=255 Identities=16% Similarity=0.090 Sum_probs=167.5
Q ss_pred CCceEEEeecccccccCCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCCChHHHH
Q 011541 128 PNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLL 207 (483)
Q Consensus 128 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~l~ 207 (483)
.+++.+++++.....-. ..+...+..+++..+. ++. +...+++|++|+++++.-..+.
T Consensus 40 ~~l~~L~ls~n~L~~lp---~~l~~~L~~L~L~~N~--------------l~~-----lp~~l~~L~~L~Ls~N~l~~lp 97 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLP---DCLPAHITTLVIPDNN--------------LTS-----LPALPPELRTLEVSGNQLTSLP 97 (622)
T ss_dssp HCCCEEECCSSCCSCCC---SCCCTTCSEEEECSCC--------------CSC-----CCCCCTTCCEEEECSCCCSCCC
T ss_pred CCCcEEEecCCCcCccC---hhhCCCCcEEEecCCC--------------CCC-----CCCcCCCCCEEEcCCCcCCcCC
Confidence 45788888765443211 1122566677666432 211 1114689999999876432222
Q ss_pred HHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHH
Q 011541 208 SVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKA 287 (483)
Q Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~ 287 (483)
. .+++|++|+++++.-..... .+++|+.|++.++. ++.. ....++|++|++++|....
T Consensus 98 ~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~-------l~~l-----p~~l~~L~~L~Ls~N~l~~----- 155 (622)
T 3g06_A 98 V---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQ-------LTSL-----PVLPPGLQELSVSDNQLAS----- 155 (622)
T ss_dssp C---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSC-------CSCC-----CCCCTTCCEEECCSSCCSC-----
T ss_pred C---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCC-------CCcC-----CCCCCCCCEEECcCCcCCC-----
Confidence 2 67899999998874332222 57889999998875 3331 2235889999999886542
Q ss_pred HHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHh
Q 011541 288 IGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFR 367 (483)
Q Consensus 288 l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 367 (483)
+....++|+.|+++++.+.... ..+++|+.|++.++. ++..+ ...++|+.|++++|.... +..
T Consensus 156 l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~-l~~l~------~~~~~L~~L~L~~N~l~~------l~~ 218 (622)
T 3g06_A 156 LPALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQ-LASLP------TLPSELYKLWAYNNRLTS------LPA 218 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSCCSS------CCC
T ss_pred cCCccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCC-CCCCC------CccchhhEEECcCCcccc------cCC
Confidence 1124578999999988755411 567899999998876 43211 234789999999875332 223
Q ss_pred cCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhc
Q 011541 368 VCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLF 447 (483)
Q Consensus 368 ~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~ 447 (483)
.+++|+.|+++++.. +. +...+++|+.|+++++ .++. +. ..+++|+.|++++|. ++ .+...+ ..+
T Consensus 219 ~~~~L~~L~Ls~N~L-~~----lp~~l~~L~~L~Ls~N-~L~~--lp---~~~~~L~~L~Ls~N~-L~--~lp~~l-~~l 283 (622)
T 3g06_A 219 LPSGLKELIVSGNRL-TS----LPVLPSELKELMVSGN-RLTS--LP---MLPSGLLSLSVYRNQ-LT--RLPESL-IHL 283 (622)
T ss_dssp CCTTCCEEECCSSCC-SC----CCCCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CC--SCCGGG-GGS
T ss_pred CCCCCCEEEccCCcc-Cc----CCCCCCcCcEEECCCC-CCCc--CC---cccccCcEEeCCCCC-CC--cCCHHH-hhc
Confidence 457899999999843 32 1156789999999998 6652 11 257899999999985 65 333333 457
Q ss_pred ccCcEEEeecC
Q 011541 448 SVLKELKWRPD 458 (483)
Q Consensus 448 ~~L~~L~~~~~ 458 (483)
++|+.|.+..+
T Consensus 284 ~~L~~L~L~~N 294 (622)
T 3g06_A 284 SSETTVNLEGN 294 (622)
T ss_dssp CTTCEEECCSC
T ss_pred cccCEEEecCC
Confidence 99999999863
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.01 E-value=7.5e-11 Score=109.86 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=77.8
Q ss_pred CCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHc
Q 011541 214 LTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQC 291 (483)
Q Consensus 214 ~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 291 (483)
++|++|+++++. ......+..+++|++|+++++. ++.... .....+++|++|+++++....... .....
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~i~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-------LQTLPA-GIFKELKNLETLWVTDNKLQALPI-GVFDQ 107 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-------CSCCCT-TTTSSCTTCCEEECCSSCCCCCCT-TTTTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-------cCeeCh-hhhcCCCCCCEEECCCCcCCcCCH-hHccc
Confidence 345566665552 1222345566666666666553 221110 012345666666666654321110 11123
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
+++|+.|+++++.+.......+..+++|++|++.++. ++.. ....+..+++|+.|+++++..... . ...+..+++
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~~~l~~ 182 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSL--PKGVFDKLTSLKELRLYNNQLKRV-P-EGAFDKLTE 182 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC--CTTTTTTCTTCCEEECCSSCCSCC-C-TTTTTTCTT
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCcc--CHhHccCCcccceeEecCCcCcEe-C-hhHhccCCC
Confidence 4555555555554333222334556666666666554 2211 122244556666666665532110 0 011223455
Q ss_pred ccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 372 VRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 372 L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
|++|++.++ .++......+..+++|+.|+++++
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 555555554 222111112334455555555544
No 91
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=6.3e-09 Score=100.51 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=97.7
Q ss_pred HHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhh--cCCCCcEEEeccCCC-CCCCCCh-
Q 011541 261 TILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALS--YCENLKTLRFVSCKK-IDPSPGP- 336 (483)
Q Consensus 261 ~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~-~~~~~~l- 336 (483)
..+...+|+|++|.|+++.... +..+ ..++|++|.+..+.+.......+. .+|+|++|+|+.+.. ...+.++
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~--l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS--IGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB--CCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHhcCCCCcEEEEeCCCCce--eccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3445556777777776652111 1111 256777777776666555555554 678888888753211 1111111
Q ss_pred --HHHh--cCCCCccEEeccccccccHHHHHHHHh--cCccccEEEccCCCCCCHHHHHH----HhcCCCCcEEEecCCC
Q 011541 337 --DEYL--GSCLALERLHLQKCQLRDKKGVRALFR--VCEAVRELVFQDCWGLDDDIFRF----ADVFRRAKFLSLEGCS 406 (483)
Q Consensus 337 --~~~~--~~~~~L~~L~L~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~~~~d~~~~~----~~~~~~L~~L~l~~~~ 406 (483)
...+ ..+|+|++|.+.+|. +++.+...++. .+++|++|+|+++ .+.+.+... +..+++|+.|+|++|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN- 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred HHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-
Confidence 1222 347899999998775 44444445543 5778888888776 566654332 245788888888887
Q ss_pred CCCHHHHHHHHhcCcccceeeeecC
Q 011541 407 LVTTEGLESVILSWTDLQSLRVVSC 431 (483)
Q Consensus 407 ~lt~~~l~~l~~~~~~L~~L~l~~c 431 (483)
.+++.++..+...+ ...+++++-
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred cCCHHHHHHHHHHc--CCEEEecCC
Confidence 78888888877544 344666553
No 92
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.00 E-value=2.3e-10 Score=77.28 Aligned_cols=46 Identities=35% Similarity=0.398 Sum_probs=36.4
Q ss_pred CccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHH--Hhhhhcccc
Q 011541 66 IDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNL--QGRLVRSLK 111 (483)
Q Consensus 66 ~d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~--~~~l~~~l~ 111 (483)
...+..||+|++.+||++|+.+++.++++|||+|+.+ .+.+|+.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 4568899999999999999999999999999999988 456888663
No 93
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=3e-09 Score=102.83 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=92.0
Q ss_pred cCCCccEEEEcCCCh----------HHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChH
Q 011541 189 GCPNLRRLVVVGASE----------FGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDI 258 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~ 258 (483)
.+++|+.|.+.+... ..+..+...+|+|++|.|+++.......+ .+++|++|.|..|. +++.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~-------l~~~ 208 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGG-------LPDS 208 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSB-------CCHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCC-------CChH
Confidence 456777777754311 12445555566666666655532222222 25566666665553 5555
Q ss_pred HHHHHHh-cCCCCcEEEeeCCCCC--hH-HHHHHHHcCcCCCeeeeccccCcHHHHHHh--hcCCCCcEEEeccCCCCCC
Q 011541 259 GLTILAQ-GCKRLVKLELSGCEGS--FD-GIKAIGQCCQMLEELTFSDHRMDDGWLAAL--SYCENLKTLRFVSCKKIDP 332 (483)
Q Consensus 259 ~l~~l~~-~~~~L~~L~L~~~~~~--~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~ 332 (483)
.+..++. .+|+|++|+|..+... .+ ++.. ....+ ..+|+|++|++.+|. +++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~---------------------l~~~l~~~~~p~Lr~L~L~~~~-i~~ 266 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV---------------------FRPLFSKDRFPNLKWLGIVDAE-EQN 266 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG---------------------TGGGSCTTTCTTCCEEEEESCT-THH
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHH---------------------HHHHHhcCCCCCcCEEeCCCCC-Cch
Confidence 5554442 3556666655421100 00 0100 00111 235777777776654 221
Q ss_pred CCChHHHh--cCCCCccEEeccccccccHHHHHHHHh---cCccccEEEccCCCCCCHHHHHHHhc-CCCCcEEEecCC
Q 011541 333 SPGPDEYL--GSCLALERLHLQKCQLRDKKGVRALFR---VCEAVRELVFQDCWGLDDDIFRFADV-FRRAKFLSLEGC 405 (483)
Q Consensus 333 ~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~~~~~d~~~~~~~~-~~~L~~L~l~~~ 405 (483)
. +...+. ..+|+|++|+|+.+ .+++.+...+.. .+++|+.|++.+| .+++.+...+.. + ...+++++.
T Consensus 267 ~-~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 267 V-VVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp H-HHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred H-HHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCC
Confidence 1 111121 24677777877654 466666655543 3567788888777 566665554433 3 344666654
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=4.7e-10 Score=105.62 Aligned_cols=168 Identities=20% Similarity=0.135 Sum_probs=122.6
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|+.|+++++.-..+.. ...+++|++|+++++.-.....+..+++|+.|+++++. +++.. . ...++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~-------l~~~~--~-l~~l~ 112 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK-------VKDLS--S-LKDLK 112 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-------CCCGG--G-GTTCT
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCc-------CCCCh--h-hccCC
Confidence 35689999998764322222 45689999999998854444448899999999999886 44421 1 45689
Q ss_pred CCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccE
Q 011541 269 RLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALER 348 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 348 (483)
+|++|+++++....- . ....+++|+.|+++++.+.+. ..+..+++|++|+++++. +++. .. +..+++|+.
T Consensus 113 ~L~~L~L~~n~i~~~--~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~-l~~~---~~-l~~l~~L~~ 182 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ-ISDI---VP-LAGLTKLQN 182 (291)
T ss_dssp TCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCCC---GG-GTTCTTCCE
T ss_pred CCCEEECCCCcCCCC--h-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc-cccc---hh-hcCCCccCE
Confidence 999999999875432 1 234578999999999886653 567889999999999876 4432 22 778999999
Q ss_pred EeccccccccHHHHHHHHhcCccccEEEccCCC
Q 011541 349 LHLQKCQLRDKKGVRALFRVCEAVRELVFQDCW 381 (483)
Q Consensus 349 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 381 (483)
|++++|...+ +.. ...+++|+.|++.++.
T Consensus 183 L~L~~N~i~~---l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKNHISD---LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCB---CGG-GTTCTTCSEEEEEEEE
T ss_pred EECCCCcCCC---Chh-hccCCCCCEEECcCCc
Confidence 9999985333 222 4568999999998873
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.98 E-value=2e-11 Score=114.12 Aligned_cols=201 Identities=17% Similarity=0.033 Sum_probs=125.5
Q ss_pred CCccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 191 PNLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
++|++|+++++.-..+. .....+++|++|+++++. ......+..+++|++|+++++. ++..... ....+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~-~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------IQSLALG-AFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------CCEECTT-TTTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-------cCccChh-hhcCC
Confidence 46888888865322221 134568889999998874 2233457788999999998875 3322111 13457
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcH-HHHHHhhcCCCCcEEEeccCCCCCCCC-ChHHHhcCCCC
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDD-GWLAALSYCENLKTLRFVSCKKIDPSP-GPDEYLGSCLA 345 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~ 345 (483)
++|++|+++++........ ....+++|+.|+++++.+.. .....+..+++|++|++.++. ++... .....+..++.
T Consensus 100 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTT
T ss_pred ccccEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccc
Confidence 8999999988765322110 13357889999999887554 234567788999999998876 33211 11122333333
Q ss_pred cc-EEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 346 LE-RLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 346 L~-~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
|. .|+++++..... ....-...+|++|+++++. ++......+..+++|+.|+++++
T Consensus 178 l~l~L~ls~n~l~~~---~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 178 LNLSLDLSLNPMNFI---QPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEEEECCSSCCCEE---CTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred cceeeecCCCccccc---CccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 33 788888753221 0011123479999999884 44333334577899999999987
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.95 E-value=6.3e-11 Score=110.38 Aligned_cols=200 Identities=17% Similarity=0.096 Sum_probs=129.5
Q ss_pred CCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcC
Q 011541 215 TLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQM 294 (483)
Q Consensus 215 ~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~ 294 (483)
+.+.+++++..-.... ..-.++|+.|+++++. ++..... ....+++|++|+++++....- ...+...+++
T Consensus 17 ~~~~l~~~~~~l~~ip-~~~~~~l~~L~l~~n~-------l~~~~~~-~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-SNIPADTKKLDLQSNK-------LSSLPSK-AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCC-SCCCTTCSEEECCSSC-------CSCCCTT-SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTT
T ss_pred CCCEEEccCCCCCccC-CCCCCCCCEEECcCCC-------CCeeCHH-HhcCCCCCCEEECCCCccCee-ChhhhcCCCC
Confidence 4556666544211111 0123689999999885 3322111 134689999999998865321 1122345789
Q ss_pred CCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccE
Q 011541 295 LEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRE 374 (483)
Q Consensus 295 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 374 (483)
|+.|+++++.+.......+..+++|++|++.++. ++.. ....+..+++|++|+++++.... .. ...+..+++|++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n~l~~-~~-~~~~~~l~~L~~ 161 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSL--PPRVFDSLTKLTYLSLGYNELQS-LP-KGVFDKLTSLKE 161 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCC--CTTTTTTCTTCCEEECCSSCCCC-CC-TTTTTTCTTCCE
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCee--CHHHhCcCcCCCEEECCCCcCCc-cC-HhHccCCcccce
Confidence 9999999987655444456788999999998876 3321 23346788999999999885322 11 112345889999
Q ss_pred EEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 375 LVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 375 L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
|++.++. +.......+..+++|+.|+++++ .++.... ..+..+++|+.|++.+++
T Consensus 162 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred eEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 9999873 33222233567899999999988 6652211 224568899999999876
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.93 E-value=4.2e-10 Score=116.54 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=126.3
Q ss_pred hhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHH
Q 011541 232 IAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLA 311 (483)
Q Consensus 232 i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 311 (483)
+..+++|+.|.+.++. +.+.. . ...+++|+.|+|++|....... ...+++|+.|+++++.+.+ ..
T Consensus 39 ~~~L~~L~~L~l~~n~-------i~~l~--~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~--l~ 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-------IKSVQ--G-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD--LS 103 (605)
T ss_dssp HHHHTTCCCCBCTTCC-------CCCCT--T-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC--CT
T ss_pred hhcCCCCCEEECcCCC-------CCCCh--H-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC--Ch
Confidence 4567899999999876 33321 1 4568999999999987643211 4578999999999988654 23
Q ss_pred HhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHH
Q 011541 312 ALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFA 391 (483)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~ 391 (483)
.+..+++|++|+|.++. +.. + ..+..+++|+.|+|++|..... .....+++|+.|+|++|.. .+... +
T Consensus 104 ~l~~l~~L~~L~Ls~N~-l~~---l-~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l-~~~~~--l 171 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-ISD---I-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI-SDIVP--L 171 (605)
T ss_dssp TSTTCTTCCEEECTTSC-CCC---C-GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCC-CCCGG--G
T ss_pred hhccCCCCCEEEecCCC-CCC---C-ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcC-CCchh--h
Confidence 57789999999999876 442 2 2367789999999999864432 2345689999999999844 33222 7
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCC
Q 011541 392 DVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 392 ~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~ 432 (483)
..+++|+.|+|++| .+++. .. +..+++|+.|+|++|.
T Consensus 172 ~~l~~L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 172 AGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred ccCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 78999999999998 67643 22 4578999999999976
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.93 E-value=3.8e-11 Score=109.69 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=8.1
Q ss_pred hcCCCCcc-EEecccc
Q 011541 340 LGSCLALE-RLHLQKC 354 (483)
Q Consensus 340 ~~~~~~L~-~L~L~~~ 354 (483)
+..+++|+ .|+++++
T Consensus 151 ~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNN 166 (239)
T ss_dssp TTTTBSSEEEEECCSC
T ss_pred ccchhcceeEEEcCCC
Confidence 34455565 6665554
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.93 E-value=7.2e-09 Score=103.83 Aligned_cols=215 Identities=12% Similarity=-0.035 Sum_probs=95.6
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
.+++|++|+++++.-.++. ...++|++|+++++.-.....+..+++|+.|++.++. ++.. ....+
T Consensus 151 ~l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-------l~~l-----~~~~~ 215 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-------LKKL-----PDLPL 215 (454)
T ss_dssp TCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-------CSSC-----CCCCT
T ss_pred CCCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-------CCcC-----CCCcC
Confidence 4455666665543211111 1123566666655532222345556666666666554 2210 11123
Q ss_pred CCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccE
Q 011541 269 RLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALER 348 (483)
Q Consensus 269 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 348 (483)
+|++|+++++.... +.. ...+++|+.|+++++.+... -...++|++|++.++. ++..+ ...++|+.
T Consensus 216 ~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l----~~~~~~L~~L~l~~N~-l~~l~------~~~~~L~~ 281 (454)
T 1jl5_A 216 SLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNY-LTDLP------ELPQSLTF 281 (454)
T ss_dssp TCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSC-CSCCC------CCCTTCCE
T ss_pred cccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCcc----cccccccCEEECCCCc-ccccC------cccCcCCE
Confidence 56666666554321 111 22455666666665543320 0123556666665544 22110 11245666
Q ss_pred EeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcC-CCCcEEEecCCCCCCHHHHHHHHhcCcccceee
Q 011541 349 LHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVF-RRAKFLSLEGCSLVTTEGLESVILSWTDLQSLR 427 (483)
Q Consensus 349 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~-~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~ 427 (483)
|++++|...+ +....++|+.|+++++.. +. +..+ ++|+.|+++++ .++. +...+++|+.|+
T Consensus 282 L~ls~N~l~~------l~~~~~~L~~L~l~~N~l-~~-----i~~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~ 343 (454)
T 1jl5_A 282 LDVSENIFSG------LSELPPNLYYLNASSNEI-RS-----LCDLPPSLEELNVSNN-KLIE-----LPALPPRLERLI 343 (454)
T ss_dssp EECCSSCCSE------ESCCCTTCCEEECCSSCC-SE-----ECCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEE
T ss_pred EECcCCccCc------ccCcCCcCCEEECcCCcC-Cc-----ccCCcCcCCEEECCCC-cccc-----ccccCCcCCEEE
Confidence 6666553221 001123555555555422 11 1112 35666666655 4431 111245666666
Q ss_pred eecCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 428 VVSCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 428 l~~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
+++|. ++. +.. .+++|++|.+..
T Consensus 344 L~~N~-l~~--lp~----~l~~L~~L~L~~ 366 (454)
T 1jl5_A 344 ASFNH-LAE--VPE----LPQNLKQLHVEY 366 (454)
T ss_dssp CCSSC-CSC--CCC----CCTTCCEEECCS
T ss_pred CCCCc-ccc--ccc----hhhhccEEECCC
Confidence 66653 332 221 345666666653
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=9.3e-11 Score=110.40 Aligned_cols=197 Identities=18% Similarity=0.081 Sum_probs=108.9
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
.+++++++++.+..-..+.. ...++++.|+++++. ......+..+++|+.|+|+++. ++.... ...
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~---~~~ 75 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-------LTKLQV---DGT 75 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-------CCEEEC---CSC
T ss_pred ccCCccEEECCCCCCCcCCC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-------cCcccC---CCC
Confidence 34677777776542111110 113578888888773 3334567778888888888775 332111 135
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
+++|+.|+++++.... +......+++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++|
T Consensus 76 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L 150 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKT--LPPGLLTPTPKL 150 (290)
T ss_dssp CTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCC--CCTTTTTTCTTC
T ss_pred CCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCc--cChhhcccccCC
Confidence 6788888888776431 11122346677777777766543333345667777777777664 332 112334566777
Q ss_pred cEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCC
Q 011541 347 ERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCS 406 (483)
Q Consensus 347 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~ 406 (483)
+.|+++++.... ....++..+++|+.|+++++... .+...+...++|+.|++.+++
T Consensus 151 ~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCC
Confidence 777777664221 00112234667777777665322 111122334567777776664
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.90 E-value=2.2e-10 Score=107.82 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=136.6
Q ss_pred hCCCCCEEEeecCCccch-HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 212 ECLTLQEFELHKCGDNVL-RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~-~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
.+++++++++.++.-... ..+ .++|+.|+|+++. ++..... ....+++|++|+++++....-... .
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~-------l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENL-------LYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD---G 74 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSC-------CSEEEGG-GGTTCTTCCEEECTTSCCCEEECC---S
T ss_pred ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCc-------CCccCHH-HhhcCCCCCEEECCCCccCcccCC---C
Confidence 467899999887642211 122 4789999999886 4332211 134689999999999876432111 4
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCc
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCE 370 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 370 (483)
.+++|+.|+++++.+.. +...+..+++|++|++.++. ++.. ....+..+++|+.|+++++..... ....+..++
T Consensus 75 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~-l~~l--~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~ 148 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSL--PLGALRGLGELQELYLKGNELKTL--PPGLLTPTP 148 (290)
T ss_dssp CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSC-CCCC--CSSTTTTCTTCCEEECTTSCCCCC--CTTTTTTCT
T ss_pred CCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCc-Cccc--CHHHHcCCCCCCEEECCCCCCCcc--Chhhccccc
Confidence 67899999999987652 23345678999999999876 4421 134467789999999999853321 112234578
Q ss_pred cccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccch
Q 011541 371 AVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEV 439 (483)
Q Consensus 371 ~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v 439 (483)
+|+.|+++++. ++......+..+++|+.|+++++ .++ .+..-+...++|+.|.+.+.+...+-.+
T Consensus 149 ~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~--~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 149 KLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLY--TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCC--CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCC--ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 99999999984 43222234567899999999998 665 1222233567899999998764444333
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.87 E-value=5.5e-09 Score=104.68 Aligned_cols=215 Identities=14% Similarity=0.089 Sum_probs=129.4
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRL 270 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L 270 (483)
++|++|+++++.-.++.. ...+++|++|+++++.-.... ....+|++|++.++. ++.. .. ...+++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~-------l~~l--~~-~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQ-------LEEL--PE-LQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSC-------CSSC--CC-CTTCTTC
T ss_pred CCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCc-------CCcC--cc-ccCCCCC
Confidence 577888877653323332 456777888887776322211 123578888887765 3221 11 3457788
Q ss_pred cEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEe
Q 011541 271 VKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLH 350 (483)
Q Consensus 271 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 350 (483)
++|+++++.... +....++|+.|+++++.+.. +. .+..+++|++|++.++. ++.. . ...++|+.|+
T Consensus 198 ~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~-l~~l---~---~~~~~L~~L~ 263 (454)
T 1jl5_A 198 TAIYADNNSLKK-----LPDLPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNL-LKTL---P---DLPPSLEALN 263 (454)
T ss_dssp CEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSSC---C---SCCTTCCEEE
T ss_pred CEEECCCCcCCc-----CCCCcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCc-CCcc---c---ccccccCEEE
Confidence 888888776432 11123578888888776542 22 25677888888887765 3321 1 1246788888
Q ss_pred ccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcC-cccceeeee
Q 011541 351 LQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSW-TDLQSLRVV 429 (483)
Q Consensus 351 L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~-~~L~~L~l~ 429 (483)
+++|...+ +....++|++|+++++. ++.- ....++|+.|+++++ .++. +..+ ++|+.|+++
T Consensus 264 l~~N~l~~------l~~~~~~L~~L~ls~N~-l~~l----~~~~~~L~~L~l~~N-~l~~------i~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 264 VRDNYLTD------LPELPQSLTFLDVSENI-FSGL----SELPPNLYYLNASSN-EIRS------LCDLPPSLEELNVS 325 (454)
T ss_dssp CCSSCCSC------CCCCCTTCCEEECCSSC-CSEE----SCCCTTCCEEECCSS-CCSE------ECCCCTTCCEEECC
T ss_pred CCCCcccc------cCcccCcCCEEECcCCc-cCcc----cCcCCcCCEEECcCC-cCCc------ccCCcCcCCEEECC
Confidence 88775322 11234678888888873 3320 012368899999887 5552 1133 489999999
Q ss_pred cCCCCCccchHHHHhhhcccCcEEEeec
Q 011541 430 SCKNIKDGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 430 ~c~~i~~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
++. ++. +. ..+++|+.|.+..
T Consensus 326 ~N~-l~~--lp----~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 326 NNK-LIE--LP----ALPPRLERLIASF 346 (454)
T ss_dssp SSC-CSC--CC----CCCTTCCEEECCS
T ss_pred CCc-ccc--cc----ccCCcCCEEECCC
Confidence 865 543 22 3368899998874
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=3e-09 Score=89.24 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCCeeeeccccCc-HHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccc
Q 011541 294 MLEELTFSDHRMD-DGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAV 372 (483)
Q Consensus 294 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 372 (483)
+|+.|+++++.+. ......+..+++|++|++.++. ++. + ..+..+++|+.|++++|...+. +......+++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~---~-~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L 90 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTS---I-ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNL 90 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCC---C-TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCC---c-hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence 3444444444433 1222233445566666665543 321 1 2344455566666655542221 22233335555
Q ss_pred cEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 373 ~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
++|+++++....-.....+..+++|+.|+++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 555555553222122233445555555555555
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.81 E-value=1.9e-10 Score=104.99 Aligned_cols=195 Identities=10% Similarity=-0.032 Sum_probs=115.4
Q ss_pred CCccEEEEcCCChHHHHH-HHHhCCCCCEEEeecCC-c--cchHHhhcCCCCCEEEeec-CCCCccccccChHHHHHHHh
Q 011541 191 PNLRRLVVVGASEFGLLS-VAEECLTLQEFELHKCG-D--NVLRGIAACENLQILKLVG-NVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~-~--~~~~~i~~~~~L~~L~L~~-~~~~~~~~~~~~~~l~~l~~ 265 (483)
++|+.|++++..-..+.. ....+++|++|+++++. - .....+..+++|++|++.+ +. ++..... ...
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-------l~~i~~~-~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-------LTYIDPD-ALK 102 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-------CCEECTT-SEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-------eeEcCHH-HhC
Confidence 478888888653322222 34568899999998874 2 2234567889999999987 54 3321111 124
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCC---eeeeccc-cCcHHHHHHhhcCCCCc-EEEeccCCCCCCCCChHHHh
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLE---ELTFSDH-RMDDGWLAALSYCENLK-TLRFVSCKKIDPSPGPDEYL 340 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~l~~~~ 340 (483)
.+++|++|+++++.... +.. ...+++|+ .|+++++ .+.......+..+++|+ +|++.++. ++..+ ....
T Consensus 103 ~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~--~~~~ 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQ--GYAF 176 (239)
T ss_dssp CCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEEC--TTTT
T ss_pred CCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccC--Hhhc
Confidence 57889999998876532 111 33567777 8999888 55443334567789999 99998765 33211 1122
Q ss_pred cCCCCccEEeccccccccHHHHHHHHhcC-ccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 341 GSCLALERLHLQKCQLRDKKGVRALFRVC-EAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 341 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
.. ++|+.|+++++..++.-. ...+..+ ++|+.|+++++.... -. ...+++|+.|.+.++
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~~-l~---~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVTA-LP---SKGLEHLKELIARNT 236 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCCC-CC---CTTCTTCSEEECTTC
T ss_pred CC-CCCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCcccc-CC---hhHhccCceeeccCc
Confidence 23 689999998874232110 1122345 677777776653211 00 014556666666554
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.77 E-value=2.3e-09 Score=91.97 Aligned_cols=112 Identities=19% Similarity=0.095 Sum_probs=62.9
Q ss_pred hhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHh
Q 011541 313 LSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFAD 392 (483)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~ 392 (483)
+..+++|+.|++.++. ++. + ..+..+++|+.|++++|..... +..+...+++|+.|+++++...+-.....+.
T Consensus 45 ~~~l~~L~~L~l~~n~-l~~---~-~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 45 TAEFVNLEFLSLINVG-LIS---V-SNLPKLPKLKKLELSENRIFGG--LDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp CGGGGGCCEEEEESSC-CCC---C-SSCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred HHhCCCCCEEeCcCCC-CCC---h-hhhccCCCCCEEECcCCcCchH--HHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 3455666666666655 332 1 3345566777777766643221 2333344667777777666332212224456
Q ss_pred cCCCCcEEEecCCCCCCHHHH--HHHHhcCcccceeeeecCC
Q 011541 393 VFRRAKFLSLEGCSLVTTEGL--ESVILSWTDLQSLRVVSCK 432 (483)
Q Consensus 393 ~~~~L~~L~l~~~~~lt~~~l--~~l~~~~~~L~~L~l~~c~ 432 (483)
.+++|+.|+++++ .++.... ...+..+++|+.|++.+|.
T Consensus 118 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 118 KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 6777777777776 4442221 2345567777777777765
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=2.5e-09 Score=89.72 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=76.7
Q ss_pred CCCCEEEeecCCcc---chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 214 LTLQEFELHKCGDN---VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 214 ~~L~~L~l~~~~~~---~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
++|++|+++++.-. ....+..+++|+.|++++|. +++. .....+++|++|+++++..... +.....
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------CCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------CCCc---hhhhcCCCCCEEECCCCcccch-HHHHhh
Confidence 45666666665321 22334566777777777664 3332 2234567777777777765432 333444
Q ss_pred cCcCCCeeeeccccCcHH-HHHHhhcCCCCcEEEeccCCCCCCCCCh-HHHhcCCCCccEEecc
Q 011541 291 CCQMLEELTFSDHRMDDG-WLAALSYCENLKTLRFVSCKKIDPSPGP-DEYLGSCLALERLHLQ 352 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~ 352 (483)
.+++|+.|+++++.+.+. ....+..+++|++|++.++. ++..+.. ...+..+++|+.|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 577788888877776552 33567788888888888775 4322221 1456778888888775
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.68 E-value=2.6e-09 Score=91.69 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=72.6
Q ss_pred CCCCEEEeecCCcc---chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 214 LTLQEFELHKCGDN---VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 214 ~~L~~L~l~~~~~~---~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
++|++|++++|.-. ....+..+++|+.|++++|. +++. .....+++|++|++++|..... +..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV---SNLPKLPKLKKLELSENRIFGG-LDMLAE 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh---hhhccCCCCCEEECcCCcCchH-HHHHHh
Confidence 45555555555311 12223556666666666654 3222 1233456667777766654332 223334
Q ss_pred cCcCCCeeeeccccCcHH-HHHHhhcCCCCcEEEeccCCCCCCCCCh-HHHhcCCCCccEEeccccc
Q 011541 291 CCQMLEELTFSDHRMDDG-WLAALSYCENLKTLRFVSCKKIDPSPGP-DEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~ 355 (483)
.+++|+.|+++++.+.+. ....+..+++|++|++.++. ++..+.. ...+..+++|+.|++.+|.
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 466777777776664432 22456677888888887775 3322111 1356778888888887764
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=1.4e-08 Score=93.85 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=35.6
Q ss_pred hCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC
Q 011541 212 ECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG 280 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 280 (483)
.+++|++|+++++.-....++..+++|+.|+++++. +++... ...+++|++|+++++..
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-------i~~~~~---l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-------ISDLSP---LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-------CCCCGG---GTTCSSCCEEECCSSCC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-------cCCChh---hccCCCCCEEECCCCcc
Confidence 456777777776643333456677777777777664 333221 34566777777766653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.8e-08 Score=93.17 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=71.6
Q ss_pred HhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHH
Q 011541 231 GIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWL 310 (483)
Q Consensus 231 ~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 310 (483)
.+..+++|+.|+++++. +++.. -...+++|++|+++++....... ...+++|+.|+++++.+.+.
T Consensus 36 ~~~~l~~L~~L~l~~n~-------i~~l~---~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l-- 100 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-------IQSLA---GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNL-- 100 (263)
T ss_dssp CHHHHTTCSEEECTTSC-------CCCCT---TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCC--
T ss_pred chhhcCcCcEEECcCCC-------cccch---HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCc--
Confidence 45667788888888775 33321 13456777777777765432211 33455666666666553321
Q ss_pred HHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHH
Q 011541 311 AALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRF 390 (483)
Q Consensus 311 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~ 390 (483)
..+.. ++|++|++.++. ++. +. .+..+++|+.|+++++...+- . ....+++|+.|+++++. +++. ..
T Consensus 101 ~~~~~-~~L~~L~L~~N~-l~~---~~-~l~~l~~L~~L~Ls~N~i~~~---~-~l~~l~~L~~L~L~~N~-i~~~--~~ 167 (263)
T 1xeu_A 101 NGIPS-ACLSRLFLDNNE-LRD---TD-SLIHLKNLEILSIRNNKLKSI---V-MLGFLSKLEVLDLHGNE-ITNT--GG 167 (263)
T ss_dssp TTCCC-SSCCEEECCSSC-CSB---SG-GGTTCTTCCEEECTTSCCCBC---G-GGGGCTTCCEEECTTSC-CCBC--TT
T ss_pred Ccccc-CcccEEEccCCc-cCC---Ch-hhcCcccccEEECCCCcCCCC---h-HHccCCCCCEEECCCCc-Ccch--HH
Confidence 01112 556666665543 221 11 244555566665555532211 1 12234555555555542 2221 22
Q ss_pred HhcCCCCcEEEecCC
Q 011541 391 ADVFRRAKFLSLEGC 405 (483)
Q Consensus 391 ~~~~~~L~~L~l~~~ 405 (483)
+..+++|+.|+++++
T Consensus 168 l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp STTCCCCCEEEEEEE
T ss_pred hccCCCCCEEeCCCC
Confidence 344455555555544
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.66 E-value=3.1e-09 Score=97.70 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=49.8
Q ss_pred CCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhc
Q 011541 236 ENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSY 315 (483)
Q Consensus 236 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 315 (483)
++|+.|+|.++. +....... ...+++|++|+++++...... ......+++|+.|+++++.+.......+..
T Consensus 35 ~~l~~L~L~~n~-------l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTG-------LATLSDAT-FRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSC-------CCCCCTTT-TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCCC-------cCccCHhH-hcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 567777777664 22211111 234567777777666542211 011123455555555555443322233445
Q ss_pred CCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc
Q 011541 316 CENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC 354 (483)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 354 (483)
+++|++|++.++. ++. .....+..+++|+.|+++++
T Consensus 106 l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 106 LTQLDKLYLGGNQ-LKS--LPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCEEEcCCCc-CCC--cChhHhccCCcccEEECcCC
Confidence 5555555555543 221 11122344555555555554
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.64 E-value=8.1e-09 Score=94.86 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=32.7
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
+++|+.|+++++.+.......+..+++|++|++.++. ++.. ....+..+++|+.|+|+++.
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~--~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSI--PAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC--CTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCcc--CHHHcCcCcCCCEEECCCCc
Confidence 4555555555554432222234556777777776654 3321 12234556677777776654
No 112
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=2e-07 Score=81.15 Aligned_cols=128 Identities=9% Similarity=-0.022 Sum_probs=86.1
Q ss_pred cHHHHHHhhcCCCCcEEEeccCCCCCCCC--ChHHHhcCCCCccEEeccccccccHHHHHHHHh---cCccccEEEccCC
Q 011541 306 DDGWLAALSYCENLKTLRFVSCKKIDPSP--GPDEYLGSCLALERLHLQKCQLRDKKGVRALFR---VCEAVRELVFQDC 380 (483)
Q Consensus 306 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~ 380 (483)
...+...+...++|++|+|.++..+++.. .+...+...++|++|+|++|. +++.+...++. ..+.|++|+|+++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34455667788889999988873465421 133345667888889888875 66666555543 4568888888888
Q ss_pred CCCCHHHHH----HHhcCCCCcEEEe--cCCCCCCHHHHHHHH---hcCcccceeeeecCCCCCcc
Q 011541 381 WGLDDDIFR----FADVFRRAKFLSL--EGCSLVTTEGLESVI---LSWTDLQSLRVVSCKNIKDG 437 (483)
Q Consensus 381 ~~~~d~~~~----~~~~~~~L~~L~l--~~~~~lt~~~l~~l~---~~~~~L~~L~l~~c~~i~~~ 437 (483)
.+.+.+.. .+...+.|++|+| +++ .+++.+...+. ...++|++|++++|. +.+.
T Consensus 104 -~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~ 166 (185)
T 1io0_A 104 -FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPR 166 (185)
T ss_dssp -CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHH
T ss_pred -cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChH
Confidence 55555322 3455678888888 666 88888765554 345788888888865 5544
No 113
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=5e-07 Score=78.57 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=62.7
Q ss_pred HHHHHHHcCcCCCeeeeccc-cCcHHHHH----HhhcCCCCcEEEeccCCCCCCCCC---hHHHhcCCCCccEEeccccc
Q 011541 284 GIKAIGQCCQMLEELTFSDH-RMDDGWLA----ALSYCENLKTLRFVSCKKIDPSPG---PDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 284 ~l~~l~~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~ 355 (483)
.+..+...+++|++|+++++ .+++.... .+...++|++|+|.++. +++. + +...+...++|++|+|++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~-g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDP-VAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHH-HHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChH-HHHHHHHHHHhCCCcCEEECcCCc
Confidence 44445555566666666665 54443322 23345566666666554 3321 2 22223444566666666553
Q ss_pred cccHHHHHHHHhc---CccccEEEc--cCCCCCCHHHH----HHHhcCCCCcEEEecCCCCCCHHH
Q 011541 356 LRDKKGVRALFRV---CEAVRELVF--QDCWGLDDDIF----RFADVFRRAKFLSLEGCSLVTTEG 412 (483)
Q Consensus 356 ~~~~~~l~~l~~~---~~~L~~L~L--~~~~~~~d~~~----~~~~~~~~L~~L~l~~~~~lt~~~ 412 (483)
+++.+...++.. ++.|++|+| .++ .+.+.+. ..+...++|+.|+|+++ .+++.+
T Consensus 105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 105 -ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 555555444432 345666666 444 4444422 23344566666666665 555444
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.48 E-value=7.1e-09 Score=100.28 Aligned_cols=82 Identities=15% Similarity=-0.023 Sum_probs=40.2
Q ss_pred CCccEEEEcCCChHHHHH-HHHhCCCCCEEEeecCCcc---chHHhhcCCCCCEEEee-cCCCCccccccChHHHHHHHh
Q 011541 191 PNLRRLVVVGASEFGLLS-VAEECLTLQEFELHKCGDN---VLRGIAACENLQILKLV-GNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~---~~~~i~~~~~L~~L~L~-~~~~~~~~~~~~~~~l~~l~~ 265 (483)
+++++|++++..-..+.. .+..+++|++|+|+++... ....+.++++|+.+.+. ++. +....- ....
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-------l~~l~~-~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-------LLYINP-EAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-------CCEECT-TSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-------ccccCc-hhhh
Confidence 467777777653222221 2345677777777766421 12234556666554333 222 111100 0123
Q ss_pred cCCCCcEEEeeCCCC
Q 011541 266 GCKRLVKLELSGCEG 280 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~ 280 (483)
.+++|++|+++++..
T Consensus 102 ~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 102 NLPNLQYLLISNTGI 116 (350)
T ss_dssp CCTTCCEEEEEEECC
T ss_pred hcccccccccccccc
Confidence 456677777766543
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.48 E-value=4.1e-09 Score=110.30 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=73.1
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCc
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCE 370 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 370 (483)
.+++++.++++.+.........+..+++|+.|++.++..... .....+..+++|+.|+|++|....- ....+..++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~--~~~~~~~~l~~L~~L~Ls~N~L~~l--~~~~f~~l~ 518 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQL--SPTAFNSLS 518 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEE--CTTTTTTCT
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccc--cCchhhhhccccCEEECCCCccCCc--ChHHHcCCC
Confidence 345555566555543333333445566777777766542221 1122345667777777777642220 011234567
Q ss_pred cccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcC-cccceeeeecCCCCCc
Q 011541 371 AVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSW-TDLQSLRVVSCKNIKD 436 (483)
Q Consensus 371 ~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~-~~L~~L~l~~c~~i~~ 436 (483)
+|++|+|+++ .++......+..+++|+.|+|+++ .++......+ ..+ ++|+.|++++++-..+
T Consensus 519 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 519 SLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCCBCCS
T ss_pred CCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCCCccc
Confidence 7777777776 333222223456777777777776 5442221111 233 4677777777654333
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.44 E-value=2.7e-08 Score=88.49 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=38.0
Q ss_pred hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhc
Q 011541 314 SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADV 393 (483)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~ 393 (483)
..+++|++|++.++. ++. .....+..+++|++|+++++.... . ....+..+++|++|++.++. ++......+..
T Consensus 73 ~~l~~L~~L~Ls~n~-l~~--~~~~~~~~l~~L~~L~L~~N~l~~-~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 146 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQ-LQS--LPNGVFDKLTQLKELALNTNQLQS-L-PDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDR 146 (208)
T ss_dssp TTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSCCCC-C-CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred CCCCCcCEEECCCCc-CCc--cCHhHhcCccCCCEEEcCCCcCcc-c-CHhHhccCCcCCEEECCCCc-cceeCHHHhcc
Confidence 445556666665543 221 112223455566666665543211 0 00112334555555555542 22111122344
Q ss_pred CCCCcEEEecCC
Q 011541 394 FRRAKFLSLEGC 405 (483)
Q Consensus 394 ~~~L~~L~l~~~ 405 (483)
+++|+.|+++++
T Consensus 147 l~~L~~L~l~~N 158 (208)
T 2o6s_A 147 LTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCccEEEecCC
Confidence 566666666665
No 117
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.43 E-value=8.9e-08 Score=100.07 Aligned_cols=56 Identities=20% Similarity=0.093 Sum_probs=27.9
Q ss_pred CccEEEEcCCChHHHH-HHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCC
Q 011541 192 NLRRLVVVGASEFGLL-SVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNV 247 (483)
Q Consensus 192 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~ 247 (483)
++++|++++..-..+. ..+..+++|++|+|++|. .....++..+++|++|+|+++.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 5666666654222211 123445666666666553 2222345556666666666553
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=5.4e-08 Score=84.04 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHH-HHHhhcCCCCcEEEeccCCCCCCCCCh-HHHhcCCC
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGW-LAALSYCENLKTLRFVSCKKIDPSPGP-DEYLGSCL 344 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~ 344 (483)
+++|+.|+++++....-. ..+...+++|+.|+++++.+.+.. ...+..+++|++|++.++.. +..+.. ...+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCC
Confidence 445555555554432110 011223455555555555443211 12456778888888877663 222221 22466788
Q ss_pred CccEEeccccc
Q 011541 345 ALERLHLQKCQ 355 (483)
Q Consensus 345 ~L~~L~L~~~~ 355 (483)
+|+.|+++++.
T Consensus 141 ~L~~Ld~~~n~ 151 (176)
T 1a9n_A 141 QVRVLDFQKVK 151 (176)
T ss_dssp TCSEETTEECC
T ss_pred ccceeCCCcCC
Confidence 88888888765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=3.7e-09 Score=108.75 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcccc
Q 011541 294 MLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVR 373 (483)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 373 (483)
.|+.|+++++.+.. ++. +..+++|+.|+++++. ++. +...+..+++|+.|+|+++...+ +. -...+++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~-l~~---lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR-LRA---LPPALAALRCLEVLQASDNALEN---VD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC-CCC---CCGGGGGCTTCCEEECCSSCCCC---CG-GGTTCSSCC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccc-ccc---cchhhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCCc
Confidence 47777777766543 122 6677888888887765 432 23456778888888888875332 23 334578888
Q ss_pred EEEccCCCCCCHHH-HHHHhcCCCCcEEEecCCCCCCHH--HHHHHHhcCcccceeee
Q 011541 374 ELVFQDCWGLDDDI-FRFADVFRRAKFLSLEGCSLVTTE--GLESVILSWTDLQSLRV 428 (483)
Q Consensus 374 ~L~L~~~~~~~d~~-~~~~~~~~~L~~L~l~~~~~lt~~--~l~~l~~~~~~L~~L~l 428 (483)
.|+|+++ .++... ...+..+++|+.|+++++ .++.. ....+...+|+|+.|++
T Consensus 512 ~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 8888887 343332 445677888999999887 55422 23344556788888864
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.38 E-value=1.2e-07 Score=97.07 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=112.1
Q ss_pred CCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCC
Q 011541 191 PNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRL 270 (483)
Q Consensus 191 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L 270 (483)
.+|+.|+++++.-.++.. ..+++|+.|+++++.-.... ..+++|++|++++|. ++... .+ ..+|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~--~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~-------l~~ip--~l---~~~L 122 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPD--NLPPQITVLEITQNALISLP--ELPASLEYLDACDNR-------LSTLP--EL---PASL 122 (571)
T ss_dssp TTCSEEECCSSCCSCCCS--CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC-------CSCCC--CC---CTTC
T ss_pred CCccEEEeCCCCCCccCH--hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCC-------CCCcc--hh---hcCC
Confidence 588888888653222221 12467888988887433322 457888888888875 33311 11 1288
Q ss_pred cEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEe
Q 011541 271 VKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLH 350 (483)
Q Consensus 271 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 350 (483)
++|+++++.... +.. .+++|+.|+++++.+.. +. ..+++|++|++.++. ++..+ . +. ++|+.|+
T Consensus 123 ~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp---~~l~~L~~L~Ls~N~-L~~lp---~-l~--~~L~~L~ 186 (571)
T 3cvr_A 123 KHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LP---ELPTSLEVLSVRNNQ-LTFLP---E-LP--ESLEALD 186 (571)
T ss_dssp CEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCC---C-CC--TTCCEEE
T ss_pred CEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CC---CcCCCcCEEECCCCC-CCCcc---h-hh--CCCCEEE
Confidence 888888876543 111 56788888888887543 11 156788888888775 44222 1 22 7888888
Q ss_pred ccccccccHHHHH-HHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHH
Q 011541 351 LQKCQLRDKKGVR-ALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESV 416 (483)
Q Consensus 351 L~~~~~~~~~~l~-~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l 416 (483)
|++|....-..+. .+....+.|+.|+++++. ++. +...+..+++|+.|+|+++ .++......+
T Consensus 187 Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~-lp~~l~~l~~L~~L~L~~N-~l~~~~p~~l 250 (571)
T 3cvr_A 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITH-IPENILSLDPTCTIILEDN-PLSSRIRESL 250 (571)
T ss_dssp CCSSCCSSCCCCC--------CCEEEECCSSC-CCC-CCGGGGGSCTTEEEECCSS-SCCHHHHHHH
T ss_pred CcCCCCCchhhHHHhhhcccccceEEecCCCc-cee-cCHHHhcCCCCCEEEeeCC-cCCCcCHHHH
Confidence 8887422100000 111112233888888873 331 2223445888888888887 7776555443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.35 E-value=1.2e-07 Score=85.08 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=42.7
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
++++|++|+|+++....-. ..+...+++|+.|+++++.+.......+..+++|++|++.++. ++.. ....+..+++
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~~~~l~~ 153 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTI--AKGTFSPLRA 153 (220)
T ss_dssp TCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCC--CTTTTTTCTT
T ss_pred CCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEE--CHHHHhCCCC
Confidence 3455555555555432110 0111234555555555554433323345566777777776655 2211 1223455667
Q ss_pred ccEEecccccc
Q 011541 346 LERLHLQKCQL 356 (483)
Q Consensus 346 L~~L~L~~~~~ 356 (483)
|+.|+++++..
T Consensus 154 L~~L~L~~N~~ 164 (220)
T 2v9t_B 154 IQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEeCCCCc
Confidence 77777776653
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.34 E-value=1e-07 Score=82.22 Aligned_cols=108 Identities=17% Similarity=0.041 Sum_probs=61.5
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
++|+.|+++++....- .....+++|+.|+++++.+.......+..+++|++|+++++. +++.+. ...+..+++|+
T Consensus 42 ~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~l~~l~~L~ 116 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGD-LDPLASLKSLT 116 (176)
T ss_dssp TCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGG-GGGGGGCTTCC
T ss_pred CCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchh-hHhhhcCCCCC
Confidence 4566666666543321 112346778888888776553322334667788888887765 332111 12456677888
Q ss_pred EEeccccccccHHH-HHHHHhcCccccEEEccCC
Q 011541 348 RLHLQKCQLRDKKG-VRALFRVCEAVRELVFQDC 380 (483)
Q Consensus 348 ~L~L~~~~~~~~~~-l~~l~~~~~~L~~L~L~~~ 380 (483)
.|+++++....... ...+...+++|+.|++.++
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 88887765322111 1223455778888877765
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.33 E-value=2.2e-08 Score=88.35 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=82.7
Q ss_pred HHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHh
Q 011541 288 IGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFR 367 (483)
Q Consensus 288 l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 367 (483)
....+++|+.|+++++.+.. +. .+..+++|++|++.++. ++. +......+++|+.|++++|...+ +.. ..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~---l~~~~~~~~~L~~L~L~~N~l~~---l~~-~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKK---IENLDAVADTLEELWISYNQIAS---LSG-IE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECS---CSSHHHHHHHCSEEEEEEEECCC---HHH-HH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-ccc---ccchhhcCCcCCEEECcCCcCCc---CCc-cc
Confidence 34457888888888876544 12 55677888888888765 432 22344456788888888875433 222 23
Q ss_pred cCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHH---------HHHHHHhcCcccceee
Q 011541 368 VCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTE---------GLESVILSWTDLQSLR 427 (483)
Q Consensus 368 ~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~---------~l~~l~~~~~~L~~L~ 427 (483)
.+++|+.|+++++...+-.....+..+++|+.|+++++ .++.. ....++..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 46788888888874433333456777888888888877 44332 1223455677777776
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=2.9e-07 Score=81.11 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=82.5
Q ss_pred HhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHH
Q 011541 312 ALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFA 391 (483)
Q Consensus 312 ~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~ 391 (483)
.+..+++|++|++.++. ++.. . .+..+++|+.|++++|.... +......+++|+.|+++++.... +..+
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l---~-~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N~l~~---l~~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKI---S-SLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYNQIAS---LSGI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCC---C-CHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEEECCC---HHHH
T ss_pred HHhcCCCCCEEECCCCC-Cccc---c-ccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCCcCCc---CCcc
Confidence 56677888888887765 4322 2 34557788888888774321 22233445778888888874333 1245
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCc--------cchHHHHhhhcccCcEEEeec
Q 011541 392 DVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKD--------GEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 392 ~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~--------~~v~~~l~~~~~~L~~L~~~~ 457 (483)
..+++|+.|+++++ .+++......+..+++|+.|++++|. ++. ......+...+++|+.|.-.+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~ 183 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLDGMP 183 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEECCGG
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEECCcc
Confidence 66788888888887 66643332334578888888888875 322 112223345578888876443
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.32 E-value=2.6e-07 Score=81.98 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=6.9
Q ss_pred hcCCCCCEEEeecC
Q 011541 233 AACENLQILKLVGN 246 (483)
Q Consensus 233 ~~~~~L~~L~L~~~ 246 (483)
..+++|++|+++++
T Consensus 49 ~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 49 DELTSLTQLYLGGN 62 (208)
T ss_dssp TTCTTCSEEECCSS
T ss_pred cccccCcEEECCCC
Confidence 34455555555544
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.31 E-value=2.1e-07 Score=84.01 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=36.9
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
++|+.|+++++...... ......+++|+.|+++++.+.......+..+++|++|+++++. ++. .....+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTV--LPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCc--cChhHhCcchhhC
Confidence 56666666666532210 0111234555555555554332222233445555555555443 221 1122234455555
Q ss_pred EEecccc
Q 011541 348 RLHLQKC 354 (483)
Q Consensus 348 ~L~L~~~ 354 (483)
.|+++++
T Consensus 116 ~L~Ls~N 122 (229)
T 3e6j_A 116 ELFMCCN 122 (229)
T ss_dssp EEECCSS
T ss_pred eEeccCC
Confidence 5555554
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.29 E-value=1.3e-07 Score=96.82 Aligned_cols=185 Identities=14% Similarity=0.084 Sum_probs=120.4
Q ss_pred hCCCCCEEEeecCCccch-HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHH
Q 011541 212 ECLTLQEFELHKCGDNVL-RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQ 290 (483)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~-~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~ 290 (483)
.+.+|+.|+++++.-... ..+ +++|++|+|+++. ++... ..+++|++|+++++.... +..+
T Consensus 57 ~~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-------l~~ip-----~~l~~L~~L~Ls~N~l~~--ip~l-- 118 (571)
T 3cvr_A 57 LINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-------LISLP-----ELPASLEYLDACDNRLST--LPEL-- 118 (571)
T ss_dssp HHTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-------CSCCC-----CCCTTCCEEECCSSCCSC--CCCC--
T ss_pred ccCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-------Ccccc-----cccCCCCEEEccCCCCCC--cchh--
Confidence 346999999998742221 112 4889999999986 44221 357899999999987543 1111
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCc
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCE 370 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 370 (483)
..+|+.|+++++.+.. +.. .+++|+.|++.++. ++.. .. .+++|+.|++++|...+ +..+ .+
T Consensus 119 -~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~l---p~---~l~~L~~L~Ls~N~L~~---lp~l---~~ 180 (571)
T 3cvr_A 119 -PASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQ-LTML---PE---LPTSLEVLSVRNNQLTF---LPEL---PE 180 (571)
T ss_dssp -CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCC---CC---CCTTCCEEECCSSCCSC---CCCC---CT
T ss_pred -hcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCc-cCcC---CC---cCCCcCEEECCCCCCCC---cchh---hC
Confidence 2389999999987654 111 67899999998876 4422 21 57899999999986332 2221 27
Q ss_pred cccEEEccCCCCCCHHHH--HHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCc
Q 011541 371 AVRELVFQDCWGLDDDIF--RFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKD 436 (483)
Q Consensus 371 ~L~~L~L~~~~~~~d~~~--~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~ 436 (483)
+|+.|+|+++....-..+ .+....+.|+.|+++++ .++. +..-+..+++|+.|+|+++. ++.
T Consensus 181 ~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~-l~~ 244 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNP-LSS 244 (571)
T ss_dssp TCCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSS-CCH
T ss_pred CCCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCc-CCC
Confidence 999999999843210000 01112233399999998 6662 22223358999999999976 554
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.26 E-value=9.6e-08 Score=92.68 Aligned_cols=159 Identities=15% Similarity=0.005 Sum_probs=85.0
Q ss_pred CCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhh
Q 011541 235 CENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALS 314 (483)
Q Consensus 235 ~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 314 (483)
.+.++.|+|+++. ++......+...+++|+.|+|+++....-.. .....+++|+.|+++++.+.......+.
T Consensus 38 ~~~l~~L~Ls~N~-------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 38 PSYTALLDLSHNN-------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CTTCSEEECCSSC-------CCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCEEECCCCC-------CCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 3568888888775 3332211112257788888888776532211 1123467777887777765543334456
Q ss_pred cCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccccccc--HHHHHHHHhcCccccEEEccCCCCCCHHHHHHHh
Q 011541 315 YCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRD--KKGVRALFRVCEAVRELVFQDCWGLDDDIFRFAD 392 (483)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~ 392 (483)
.+++|++|+|.++. ++.. ....+..+++|+.|+|+++.... ...+.. ...+++|+.|+|+++. +.......+.
T Consensus 110 ~l~~L~~L~L~~N~-i~~~--~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~ 184 (361)
T 2xot_A 110 DLQALEVLLLYNNH-IVVV--DRNAFEDMAQLQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSSNK-LKKLPLTDLQ 184 (361)
T ss_dssp TCTTCCEEECCSSC-CCEE--CTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSSC-CCCCCHHHHH
T ss_pred CCcCCCEEECCCCc-ccEE--CHHHhCCcccCCEEECCCCcCCeeCHHHhcC-cccCCcCCEEECCCCC-CCccCHHHhh
Confidence 67777777777665 3211 12335566777777777764222 110000 0235667777776653 3322222334
Q ss_pred cCCC--CcEEEecCCC
Q 011541 393 VFRR--AKFLSLEGCS 406 (483)
Q Consensus 393 ~~~~--L~~L~l~~~~ 406 (483)
.++. |+.|+|.+++
T Consensus 185 ~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HSCHHHHTTEECCSSC
T ss_pred hccHhhcceEEecCCC
Confidence 4444 3566676663
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.26 E-value=2e-07 Score=83.65 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=49.2
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEA 371 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 371 (483)
+++|+.|+++++.+.......+..+++|++|+++++. ++. .....+..+++|+.|+|+++..... . ...+..+++
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~~l~~ 130 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LEN--VQHKMFKGLESLKTLMLRSNRITCV-G-NDSFIGLSS 130 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCC--CCGGGGTTCSSCCEEECTTSCCCCB-C-TTSSTTCTT
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCc--cCHhHhcCCcCCCEEECCCCcCCeE-C-HhHcCCCcc
Confidence 4444444444444332222234556666666666554 221 1133345566666666666542210 0 011123455
Q ss_pred ccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 372 VRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 372 L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
|+.|+|+++ .++......+..+++|+.|+++++
T Consensus 131 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 131 VRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 555555554 222211222344556666666655
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.23 E-value=5.1e-07 Score=81.51 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=56.6
Q ss_pred CCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHc
Q 011541 214 LTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQC 291 (483)
Q Consensus 214 ~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 291 (483)
++|+.|+++++. ......+..+++|+.|+|+++. +..... .....+++|+.|+|+++....-. ......
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-------l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-------LGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFDR 110 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-------CCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhCc
Confidence 445555555442 1112334455555555555543 211100 01123455666666555432110 011123
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
+++|+.|+++++.+. .+...+..+++|++|++.++. ++.. ....+..+++|+.|+++++.
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~~--~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSI--PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC-CCCC--CTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc-CCcc--CHHHHhCCCCCCEEEeeCCC
Confidence 445555555554433 112233556666666666553 3211 12334556666666666654
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.22 E-value=1.2e-07 Score=85.12 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=43.4
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCcc
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALE 347 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 347 (483)
++|+.|+++++....-.. .....+++|+.|+++++.+.......+..+++|++|+++++. ++. .....+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITE--LPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCC--CCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCc--cCHhHccCCCCCC
Confidence 467777777765432110 112235566666666665444333445556666666666554 321 1122334556666
Q ss_pred EEeccccc
Q 011541 348 RLHLQKCQ 355 (483)
Q Consensus 348 ~L~L~~~~ 355 (483)
.|+|+++.
T Consensus 108 ~L~L~~N~ 115 (220)
T 2v9t_B 108 LLLLNANK 115 (220)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 66666553
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.21 E-value=3.6e-07 Score=81.91 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=41.7
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+++++...... ......+++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~ 154 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITT--VAPGAFDTLHS 154 (220)
T ss_dssp TCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCC--BCTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCE--ECHHHhcCCCC
Confidence 3455666666555432110 0111234555555555554333223334556666666666554 221 11233445666
Q ss_pred ccEEecccccc
Q 011541 346 LERLHLQKCQL 356 (483)
Q Consensus 346 L~~L~L~~~~~ 356 (483)
|+.|+++++..
T Consensus 155 L~~L~L~~N~l 165 (220)
T 2v70_A 155 LSTLNLLANPF 165 (220)
T ss_dssp CCEEECCSCCE
T ss_pred CCEEEecCcCC
Confidence 66666666543
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=4.4e-07 Score=86.81 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=75.8
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc-ccccHHHHHHHHhcCcc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC-QLRDKKGVRALFRVCEA 371 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~ 371 (483)
.++..+.+.+......+......|++|++|++.++. ++.. ....+..|.+|+.|.+..+ ..+.. ..+.+|.+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I--~~~aF~~~~~L~~l~l~~ni~~I~~----~aF~~~~~ 274 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTI--PDFTFAQKKYLLKIKLPHNLKTIGQ----RVFSNCGR 274 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEE--CTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTT
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-ccee--cHhhhhCCCCCCEEECCcccceehH----HHhhCChh
Confidence 445566665554444444444568999999998754 3311 1334678999999999764 12221 23466899
Q ss_pred cc-EEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceee
Q 011541 372 VR-ELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLR 427 (483)
Q Consensus 372 L~-~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~ 427 (483)
|+ .+.+.+ .+..-.......|++|+.|++.++ .++.-+- ..+.+|++|+.|.
T Consensus 275 L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECT-TTTCTTCCCCEEE
T ss_pred ccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccch-hhhcCCcchhhhc
Confidence 99 999976 222222233568999999999765 4432211 1245788888775
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.18 E-value=1.9e-07 Score=90.52 Aligned_cols=160 Identities=18% Similarity=0.021 Sum_probs=105.9
Q ss_pred CCCCCEEEeecCC--ccchHHhh-cCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHH
Q 011541 213 CLTLQEFELHKCG--DNVLRGIA-ACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIG 289 (483)
Q Consensus 213 ~~~L~~L~l~~~~--~~~~~~i~-~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~ 289 (483)
.+.++.|+++++. ......+. .+++|+.|+|+++. ++...-. ....+++|++|+|+++....-. ....
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-------i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~ 108 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-------LNFISSE-AFVPVPNLRYLDLSSNHLHTLD-EFLF 108 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-------CCEECTT-TTTTCTTCCEEECCSSCCCEEC-TTTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-------CCccChh-hccCCCCCCEEECCCCcCCcCC-HHHh
Confidence 3569999999884 22233455 89999999999886 4332211 1346899999999998754221 1123
Q ss_pred HcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHh---cCCCCccEEeccccccccHHHHHHHH
Q 011541 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYL---GSCLALERLHLQKCQLRDKKGVRALF 366 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~---~~~~~L~~L~L~~~~~~~~~~l~~l~ 366 (483)
..+++|+.|+++++.+.......+..+++|++|+|.++. ++..+ ...+ ..+++|+.|+|+++.... -....+
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~--~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~- 183 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFP--VELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL- 183 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCC--GGGTC----CTTCCEEECCSSCCCC-CCHHHH-
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeC--HHHhcCcccCCcCCEEECCCCCCCc-cCHHHh-
Confidence 467899999999998765445567889999999999876 44221 2223 568999999999875322 112222
Q ss_pred hcCcc--ccEEEccCCCCCCHH
Q 011541 367 RVCEA--VRELVFQDCWGLDDD 386 (483)
Q Consensus 367 ~~~~~--L~~L~L~~~~~~~d~ 386 (483)
..++. ++.|.|.+++..-|.
T Consensus 184 ~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp HHSCHHHHTTEECCSSCEECCH
T ss_pred hhccHhhcceEEecCCCccCCc
Confidence 23554 588999987655443
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=3.6e-07 Score=87.43 Aligned_cols=93 Identities=10% Similarity=-0.053 Sum_probs=57.7
Q ss_pred ccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccc-eeeeecCCCCC
Q 011541 357 RDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQ-SLRVVSCKNIK 435 (483)
Q Consensus 357 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~-~L~l~~c~~i~ 435 (483)
+....+..+...|++|++|+|.++. ++.-....+..|++|+.|++.++ ++.-+ ...+..|++|+ .|.+.+ .++
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~~L~~~l~l~~--~l~ 286 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCGRLAGTLELPA--SVT 286 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEEECT--TCC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh-HHHhhCChhccEEEEEcc--cce
Confidence 3345555666678899999998752 33222233567888999998764 32111 12245788898 888876 243
Q ss_pred ccchHHHHhhhcccCcEEEeec
Q 011541 436 DGEVSPALSTLFSVLKELKWRP 457 (483)
Q Consensus 436 ~~~v~~~l~~~~~~L~~L~~~~ 457 (483)
. +.......|++|+.+.+.+
T Consensus 287 ~--I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 287 A--IEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp E--ECTTTTTTCTTEEEEEECS
T ss_pred E--EchhhhhCCccCCEEEeCC
Confidence 2 2222335678899988865
No 136
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.06 E-value=6.4e-07 Score=81.41 Aligned_cols=48 Identities=23% Similarity=0.125 Sum_probs=43.1
Q ss_pred cCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHH--Hhhhhcccccccc
Q 011541 68 RTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNL--QGRLVRSLKVLDW 115 (483)
Q Consensus 68 ~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~--~~~l~~~l~~~~~ 115 (483)
.+..||+||+.+||+||+.+|+.++++|||+|+.+ ++.+|+.+...+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 36789999999999999999999999999999988 6889999877653
No 137
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.05 E-value=5e-05 Score=65.76 Aligned_cols=119 Identities=12% Similarity=0.083 Sum_probs=50.5
Q ss_pred HHHHhhcCCCCcEEEeccCCCCCCCCC---hHHHhcCCCCccEEeccccccccHHHHHHHHh---cCccccEEEccCCCC
Q 011541 309 WLAALSYCENLKTLRFVSCKKIDPSPG---PDEYLGSCLALERLHLQKCQLRDKKGVRALFR---VCEAVRELVFQDCWG 382 (483)
Q Consensus 309 ~~~~l~~~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~~~ 382 (483)
+..++..-+.|++|+|.++..+.+. + +...+..-..|+.|+|++|. +++.+...++. ....|++|+|+++ .
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N-~ 109 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-F 109 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC-c
Confidence 3334444455666655543233321 1 12223334455555555543 44444333322 2345555555555 3
Q ss_pred CCHHHH-HH---HhcCCCCcEEEecCCC--CCCHHHHHHHH---hcCcccceeeeec
Q 011541 383 LDDDIF-RF---ADVFRRAKFLSLEGCS--LVTTEGLESVI---LSWTDLQSLRVVS 430 (483)
Q Consensus 383 ~~d~~~-~~---~~~~~~L~~L~l~~~~--~lt~~~l~~l~---~~~~~L~~L~l~~ 430 (483)
+.+.+. ++ +..-..|+.|+|+++. .+++.+...+. ..-++|+.|++..
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 333322 11 2223345555555431 34444433222 2234555555543
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=2.5e-06 Score=87.61 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=109.3
Q ss_pred cCCCccEEEEcCCC--------------hHHHHHHHHhCCCCCEEE-eecCCccch-------HHhhc--CCCCCEEEee
Q 011541 189 GCPNLRRLVVVGAS--------------EFGLLSVAEECLTLQEFE-LHKCGDNVL-------RGIAA--CENLQILKLV 244 (483)
Q Consensus 189 ~~~~L~~L~l~~~~--------------~~~l~~~~~~~~~L~~L~-l~~~~~~~~-------~~i~~--~~~L~~L~L~ 244 (483)
.|++|+.|++.+.. ..........+++|+.|+ ++.+.-... ..+.. ...|+.|+|+
T Consensus 370 ~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls 449 (567)
T 1dce_A 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449 (567)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECT
T ss_pred HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEec
Confidence 56677777765321 112334455677788887 333210000 11221 2469999999
Q ss_pred cCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEe
Q 011541 245 GNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRF 324 (483)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 324 (483)
++. ++.. .. ...+++|+.|+++++... .+......+++|+.|+++++.+.. +. .+..+++|++|++
T Consensus 450 ~n~-------l~~l--p~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 450 HKD-------LTVL--CH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TSC-------CSSC--CC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CCC-------CCCC--cC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 885 4332 12 446789999999998764 222234468899999999988665 22 6788999999999
Q ss_pred ccCCCCCCCCChHHHhcCCCCccEEeccccccccH-HHHHHHHhcCccccEEEc
Q 011541 325 VSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDK-KGVRALFRVCEAVRELVF 377 (483)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~L 377 (483)
+++. ++.. .....+..+++|+.|+|+++...+. .....+...+|+|+.|++
T Consensus 516 s~N~-l~~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNR-LQQS-AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSC-CCSS-STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-CCCC-CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8876 4421 1145577899999999999863322 123344556889998864
No 139
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.82 E-value=6.3e-06 Score=75.89 Aligned_cols=46 Identities=33% Similarity=0.476 Sum_probs=40.2
Q ss_pred ccCCCCcHHHHHHHhccCCcccch-hhhhhhHHHHHH--Hhhhhccccc
Q 011541 67 DRTLLLSDDILLRILSKLPVSQRN-ANSLVCKRWLNL--QGRLVRSLKV 112 (483)
Q Consensus 67 d~~~~LP~ell~~I~~~L~~~~~~-~~~lVck~W~~~--~~~l~~~l~~ 112 (483)
..+..||+|++.+||.+|+.+++. +|++|||+|+.+ .+.+|+....
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~ 97 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ 97 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence 357789999999999999999999 999999999988 4677887654
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.76 E-value=4.1e-07 Score=87.79 Aligned_cols=223 Identities=12% Similarity=0.006 Sum_probs=134.3
Q ss_pred CCCCCEEEeecCCcc--chHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEee-CCCCChHHHHHHH
Q 011541 213 CLTLQEFELHKCGDN--VLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELS-GCEGSFDGIKAIG 289 (483)
Q Consensus 213 ~~~L~~L~l~~~~~~--~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~-~~~~~~~~l~~l~ 289 (483)
.+++++|+|+++.-. ....+..+++|++|+|+++.. ...+... ...++++|+++.+. ++... .......
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~~----~f~~L~~l~~~l~~~~N~l~-~l~~~~f 100 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEAD----VFSNLPKLHEIRIEKANNLL-YINPEAF 100 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECTT----SBCSCTTCCEEEEEEETTCC-EECTTSB
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccChh----HhhcchhhhhhhcccCCccc-ccCchhh
Confidence 368999999988432 234578899999999998851 0001111 12356777765443 33322 1111223
Q ss_pred HcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcC
Q 011541 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVC 369 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 369 (483)
..+++|+.|+++++.+............++..|++.++..+...+. ..+......++.|+++++.... +..-.-..
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~~---i~~~~f~~ 176 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQE---IHNSAFNG 176 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSCCCE---ECTTSSTT
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhccccccccC---CChhhccc
Confidence 4678999999998875432222233456788888877665542111 1122333578999999875221 11111124
Q ss_pred ccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhccc
Q 011541 370 EAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSV 449 (483)
Q Consensus 370 ~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~ 449 (483)
.+|++|.+.++..+..--...+..+++|+.|+++++ .++.-. ...+.+|++|.+.+|.+++.-.- ...+++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~~~l~~lP~----l~~l~~ 247 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP----SYGLENLKKLRARSTYNLKKLPT----LEKLVA 247 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTCTTCCCCCC----TTTCCS
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC----hhhhccchHhhhccCCCcCcCCC----chhCcC
Confidence 679999998765554332234567899999999998 665211 12356888888888876654321 145788
Q ss_pred CcEEEee
Q 011541 450 LKELKWR 456 (483)
Q Consensus 450 L~~L~~~ 456 (483)
|+.+.+.
T Consensus 248 L~~l~l~ 254 (350)
T 4ay9_X 248 LMEASLT 254 (350)
T ss_dssp CCEEECS
T ss_pred hhhCcCC
Confidence 9888874
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.70 E-value=1.3e-05 Score=68.84 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=35.0
Q ss_pred hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhc
Q 011541 314 SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADV 393 (483)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~ 393 (483)
..+++|++|++.++. ++.. ....+..+++|+.|+++++...+ .....+..+++|++|+++++. ++......+..
T Consensus 49 ~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 122 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQ-IQSL--PDGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDR 122 (177)
T ss_dssp TTCTTCSEEECCSSC-CCCC--CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred cCcccccEEECCCCc-ceEe--ChhHccCCCccCEEECCCCCccc--cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcC
Confidence 445555555555543 2211 11223445555555555543111 000111234455555554442 22111112234
Q ss_pred CCCCcEEEecCC
Q 011541 394 FRRAKFLSLEGC 405 (483)
Q Consensus 394 ~~~L~~L~l~~~ 405 (483)
+++|+.|+++++
T Consensus 123 l~~L~~L~l~~N 134 (177)
T 2o6r_A 123 LTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS
T ss_pred CcccCEEEecCC
Confidence 555555555555
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.66 E-value=5.4e-06 Score=72.41 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=26.5
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
++|+.|+++++.+.......+..+++|++|+++++. ++. .....+..+++|++|+++++.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISC--VMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCE--ECTTSSTTCTTCCEEECTTCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCe--eCHHHhhcCCCCCEEEeCCCC
Confidence 344444444443322222223445566666665544 221 112223445566666665554
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.62 E-value=1.8e-05 Score=69.06 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=30.7
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccccc
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQL 356 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 356 (483)
+++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++|+.|+++++..
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISV--VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCB--CCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCe--eChhhhhcCccccEEEeCCCCe
Confidence 3444555554444332222334556667777766654 321 1122344566666666666543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.59 E-value=3.6e-05 Score=66.09 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=40.7
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
+++|++|+++++...... ......+++|+.|+++++.+.......+..+++|++|++.++. ++. .....+..+++|
T Consensus 51 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~--~~~~~~~~l~~L 126 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKS--VPDGIFDRLTSL 126 (177)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSC--CCTTTTTTCTTC
T ss_pred cccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceE--eCHHHhcCCccc
Confidence 455555555554332110 0011234455555555544332222234456667777776654 331 112234556667
Q ss_pred cEEeccccccc
Q 011541 347 ERLHLQKCQLR 357 (483)
Q Consensus 347 ~~L~L~~~~~~ 357 (483)
++|+++++...
T Consensus 127 ~~L~l~~N~~~ 137 (177)
T 2o6r_A 127 QKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCee
Confidence 77777666533
No 145
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.58 E-value=1.2e-05 Score=80.40 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred CCccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHH--H-hhhhcccccc
Q 011541 65 RIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNL--Q-GRLVRSLKVL 113 (483)
Q Consensus 65 ~~d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~--~-~~l~~~l~~~ 113 (483)
..|.+..||+|++.+||+||+.+++.+|++|||+|+.+ . +.+|+.+.+.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 46889999999999999999999999999999999987 3 6799987653
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.55 E-value=1.1e-05 Score=85.63 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=45.2
Q ss_pred cCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCC
Q 011541 266 GCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLA 345 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 345 (483)
.+++|++|+|+++... .+..-...+++|+.|+++++.+. .++..+..+++|++|+|.++. ++. +...+..+++
T Consensus 245 ~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~---lp~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM-VTT---LPWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC-CCC---CCSSTTSCTT
T ss_pred CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC-CCc---cChhhhcCCC
Confidence 3455555555555433 11111234556666666665544 223345566777777777664 332 1222566777
Q ss_pred ccEEecccccc
Q 011541 346 LERLHLQKCQL 356 (483)
Q Consensus 346 L~~L~L~~~~~ 356 (483)
|+.|+|++|..
T Consensus 318 L~~L~L~~N~l 328 (727)
T 4b8c_D 318 LQFLGVEGNPL 328 (727)
T ss_dssp CCCEECTTSCC
T ss_pred ccEEeCCCCcc
Confidence 77777777653
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.53 E-value=3.9e-05 Score=66.95 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=18.2
Q ss_pred hhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc
Q 011541 313 LSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC 354 (483)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 354 (483)
+..+++|++|+++++. ++.. ....+..+++|+.|+|+++
T Consensus 50 ~~~l~~L~~L~Ls~N~-i~~i--~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNR-ISTL--SNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp GGGCTTCCEEECCSSC-CCCC--CTTTTTTCTTCCEEECCSS
T ss_pred hhcccCCCEEECCCCc-CCEe--CHhHccCCCCCCEEECCCC
Confidence 3445555555555543 2211 1122344555555555554
No 148
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=0.0018 Score=56.04 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=56.7
Q ss_pred hhcCCCCcEEEeccCCCCCCC--CChHHHhcCCCCccEEeccccccccHHHHHHHHhcC---ccccEEEccCCC--CCCH
Q 011541 313 LSYCENLKTLRFVSCKKIDPS--PGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVC---EAVRELVFQDCW--GLDD 385 (483)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~---~~L~~L~L~~~~--~~~d 385 (483)
+..-+.|++|+|.+|. +++. ..+...+..-..|++|+|+.+ .+++.+...++..+ ..|++|+|.++. .+.+
T Consensus 66 L~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 3344567777776655 3321 134445556677888888876 47777777766543 368888887642 3455
Q ss_pred HH----HHHHhcCCCCcEEEecCC
Q 011541 386 DI----FRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 386 ~~----~~~~~~~~~L~~L~l~~~ 405 (483)
.+ ...+..-+.|+.|+++.+
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccCC
Confidence 42 234566778888888755
No 149
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.44 E-value=2.1e-05 Score=77.98 Aligned_cols=50 Identities=32% Similarity=0.376 Sum_probs=43.9
Q ss_pred CCCccCCCCcHH----HHHHHhccCCcccchhhhhhhHHHHHH--Hhhhhcccccc
Q 011541 64 SRIDRTLLLSDD----ILLRILSKLPVSQRNANSLVCKRWLNL--QGRLVRSLKVL 113 (483)
Q Consensus 64 ~~~d~~~~LP~e----ll~~I~~~L~~~~~~~~~lVck~W~~~--~~~l~~~l~~~ 113 (483)
-..|.+..||+| ++.+||+||+.+++.++++|||+|+.+ ...+|+.+...
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~ 61 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 346889999999 999999999999999999999999977 56789987543
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.39 E-value=2.5e-05 Score=68.15 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=22.3
Q ss_pred CcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCC
Q 011541 292 CQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCK 328 (483)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 328 (483)
+++|+.|+++++.+.......+..+++|++|++.++.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4556666666655444333445567777888777655
No 151
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.38 E-value=5.6e-05 Score=75.01 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCccCCCCcHHHHHHHhccCCcccchhhhhhhHHHHHHH--hhhhccccc
Q 011541 65 RIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQ--GRLVRSLKV 112 (483)
Q Consensus 65 ~~d~~~~LP~ell~~I~~~L~~~~~~~~~lVck~W~~~~--~~l~~~l~~ 112 (483)
..|.+..||+|++.+||+||+.+++.++++|||+|+.+. ..+|+.+..
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 468899999999999999999999999999999999884 457887654
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.27 E-value=3.8e-05 Score=81.38 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=54.6
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecCCc-cchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGD-NVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
.+++|+.|+++++....+......+++|++|+|+++.- .....+..+++|+.|+|+++. ++. +..-...+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-------l~~--lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-------LTS--LPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-------CSS--CCSSGGGG
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-------CCc--cChhhcCC
Confidence 45666666666543222222222566666666666532 222445666666666666664 221 11112345
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHH
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDG 308 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 308 (483)
++|++|+|++|.... +..-...+++|+.|+++++.+...
T Consensus 293 ~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCCC
Confidence 666666666664421 111123456666666666655433
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.84 E-value=0.00092 Score=61.06 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=15.8
Q ss_pred cCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccc
Q 011541 315 YCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKC 354 (483)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 354 (483)
.+++|++|+|+++. ++.-..+...+..+++|+.|+|+++
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC
Confidence 44555555554433 2211112222334444444444444
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.62 E-value=0.00016 Score=70.73 Aligned_cols=188 Identities=11% Similarity=0.053 Sum_probs=79.8
Q ss_pred CCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCc
Q 011541 215 TLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQ 293 (483)
Q Consensus 215 ~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~ 293 (483)
+|+++.+... ......++..|.+|+.+.+..+.. ..+.+..+ .+.+|+.+.+...-. .--......|+
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l----~~I~~~aF-----~~~~L~~l~lp~~l~--~I~~~aF~~~~ 226 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKI----TKLPASTF-----VYAGIEEVLLPVTLK--EIGSQAFLKTS 226 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCC----SEECTTTT-----TTCCCSEEECCTTCC--EECTTTTTTCT
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCCcc----eEechhhE-----eecccCEEEeCCchh--eehhhHhhCCC
Confidence 4666665542 222233455566666666654320 01222211 135566666543211 00001123455
Q ss_pred CCCeeeecccc--CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEecccccc-------ccHHHHHH
Q 011541 294 MLEELTFSDHR--MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQL-------RDKKGVRA 364 (483)
Q Consensus 294 ~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-------~~~~~l~~ 364 (483)
+|+.+.+.... ++. .++.. .+|+.+.+... ++.. -......|++|+.+.+.++.. +.. .
T Consensus 227 ~L~~l~l~~~l~~I~~---~aF~~-~~L~~i~lp~~--i~~I--~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~----~ 294 (401)
T 4fdw_A 227 QLKTIEIPENVSTIGQ---EAFRE-SGITTVKLPNG--VTNI--ASRAFYYCPELAEVTTYGSTFNDDPEAMIHP----Y 294 (401)
T ss_dssp TCCCEECCTTCCEECT---TTTTT-CCCSEEEEETT--CCEE--CTTTTTTCTTCCEEEEESSCCCCCTTCEECT----T
T ss_pred CCCEEecCCCccCccc---ccccc-CCccEEEeCCC--ccEE--ChhHhhCCCCCCEEEeCCccccCCcccEECH----H
Confidence 66666665432 111 11222 45666666321 1110 012245566666666654321 111 1
Q ss_pred HHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecC
Q 011541 365 LFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSC 431 (483)
Q Consensus 365 l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c 431 (483)
.+..|++|+.+.+.+. +..-.......|.+|+.+.|... ++.-+ ...+..| +|+.|.+.+.
T Consensus 295 aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~-~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQIN-FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEEC-TTSSSSS-CCCEEEECCS
T ss_pred HhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEc-HHhCCCC-CCCEEEEcCC
Confidence 2345666666666531 11111122345666666666432 22111 1113355 6666666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.57 E-value=0.003 Score=57.61 Aligned_cols=31 Identities=29% Similarity=0.159 Sum_probs=14.5
Q ss_pred CCcEEEeeCCCCCh------HHHHHHHHcCcCCCeee
Q 011541 269 RLVKLELSGCEGSF------DGIKAIGQCCQMLEELT 299 (483)
Q Consensus 269 ~L~~L~L~~~~~~~------~~l~~l~~~~~~L~~L~ 299 (483)
+|++|+|.++.... .-...+...+|+|+.|+
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 55555555554332 11223445555665554
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.51 E-value=0.00021 Score=69.92 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=105.5
Q ss_pred CccEEEEcCC-ChHHHHHHHHhCCCCCEEEeecCC--ccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCC
Q 011541 192 NLRRLVVVGA-SEFGLLSVAEECLTLQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCK 268 (483)
Q Consensus 192 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (483)
+|+++.+.+. ...+ ...+..|++|+.+++..+. ......+ .+.+|+.+.|..... .+.+.. ..+|+
T Consensus 158 ~L~~i~lp~~l~~I~-~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp~~l~-----~I~~~a----F~~~~ 226 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLK-EDIFYYCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLPVTLK-----EIGSQA----FLKTS 226 (401)
T ss_dssp CCCEEECCTTCCEEC-SSTTTTCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECCTTCC-----EECTTT----TTTCT
T ss_pred CceEEEeCCCccEeh-HHHhhCcccCCeeecCCCcceEechhhE-eecccCEEEeCCchh-----eehhhH----hhCCC
Confidence 5777777541 1111 1123568888888887542 2222222 367888888864321 122222 34578
Q ss_pred CCcEEEeeCCCC-ChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCC--CChHHHhcCCCC
Q 011541 269 RLVKLELSGCEG-SFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPS--PGPDEYLGSCLA 345 (483)
Q Consensus 269 ~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~ 345 (483)
+|+.+.+...-. ... .++. . .+|+.+.+.+... .-...++..|++|+.+.+.+.....+. ..-......|++
T Consensus 227 ~L~~l~l~~~l~~I~~--~aF~-~-~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 227 QLKTIEIPENVSTIGQ--EAFR-E-SGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TCCCEECCTTCCEECT--TTTT-T-CCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCCEEecCCCccCccc--cccc-c-CCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 888888865321 111 1111 1 4788888865431 111235678899999998765421100 001234567889
Q ss_pred ccEEecccc-ccccHHHHHHHHhcCccccEEEccCCCCCCHHHHHHHhcCCCCcEEEecCC
Q 011541 346 LERLHLQKC-QLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGC 405 (483)
Q Consensus 346 L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~~~~~~~~L~~L~l~~~ 405 (483)
|+.+.+... ..+... .+.+|.+|+.+.|... +..-.......| +|+.+.+.++
T Consensus 302 L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 302 LARFEIPESIRILGQG----LLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCEECCCTTCCEECTT----TTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCeEEeCCceEEEhhh----hhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 999988742 223222 3456889999998553 221112234567 8999999876
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.48 E-value=0.0011 Score=56.46 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=17.3
Q ss_pred hcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 314 SYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
..+++|++|++.++. ++. .....+..+++|+.|+|+++.
T Consensus 78 ~~l~~L~~L~L~~N~-l~~--l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNH-LKS--IPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCSEEECCSSC
T ss_pred CCcchhhEEECCCCc-cce--eCHHHhccccCCCEEEeCCCC
Confidence 344555555555443 221 111223445555555555543
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.46 E-value=0.0012 Score=56.22 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=9.3
Q ss_pred HhcCCCCcEEEecCC
Q 011541 391 ADVFRRAKFLSLEGC 405 (483)
Q Consensus 391 ~~~~~~L~~L~l~~~ 405 (483)
+..+++|+.|+++++
T Consensus 101 ~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCSEEECCSS
T ss_pred hccccCCCEEEeCCC
Confidence 345666666666666
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.44 E-value=0.0013 Score=55.82 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=6.9
Q ss_pred cCCCCcEEEecCC
Q 011541 393 VFRRAKFLSLEGC 405 (483)
Q Consensus 393 ~~~~L~~L~l~~~ 405 (483)
.+++|+.|+|+++
T Consensus 100 ~l~~L~~L~L~~N 112 (170)
T 3g39_A 100 NLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEEeCCC
Confidence 4455555555554
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.44 E-value=0.0012 Score=55.92 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=18.9
Q ss_pred hhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 313 LSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 313 l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
+..+++|++|++.++. ++. .....+..+++|+.|+|+++.
T Consensus 74 f~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQ-LKS--IPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCc-cCE--eCHHHhcCCCCCCEEEeCCCC
Confidence 3445556666665543 221 112224445556666665543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.30 E-value=0.0064 Score=57.97 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=25.2
Q ss_pred cCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccc
Q 011541 293 QMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQ 355 (483)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 355 (483)
++|+.|+++++.+.......+..+++|++|+|+++. ++.. ....+...+ |+.|+|.++.
T Consensus 56 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~--~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESL--SWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCC--CSTTTCSCC-CCEEECCSSC
T ss_pred cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-ccee--CHHHcccCC-ceEEEeeCCC
Confidence 334444444433332222334455666666665543 2211 111222222 6666666554
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.14 E-value=0.0081 Score=57.23 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=46.4
Q ss_pred HcCcCCCeeeecc-ccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhc
Q 011541 290 QCCQMLEELTFSD-HRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRV 368 (483)
Q Consensus 290 ~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 368 (483)
..+++|+.|++++ +.+.......+..+++|++|+|+++. ++. .....+..+++|+.|+|+++....- ...++..
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~--~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~ 102 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRF--VAPDAFHFTPRLSRLNLSFNALESL--SWKTVQG 102 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCE--ECTTGGGSCSCCCEEECCSSCCSCC--CSTTTCS
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cce--eCHHHhcCCcCCCEEeCCCCcccee--CHHHccc
Confidence 3455677777774 55444333445667777777777654 331 1123456677777777777642210 0011121
Q ss_pred CccccEEEccCCCC
Q 011541 369 CEAVRELVFQDCWG 382 (483)
Q Consensus 369 ~~~L~~L~L~~~~~ 382 (483)
.+ |+.|.|.++..
T Consensus 103 ~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 103 LS-LQELVLSGNPL 115 (347)
T ss_dssp CC-CCEEECCSSCC
T ss_pred CC-ceEEEeeCCCc
Confidence 22 66666666543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.10 E-value=0.003 Score=61.55 Aligned_cols=232 Identities=12% Similarity=0.144 Sum_probs=130.8
Q ss_pred hcCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhc
Q 011541 188 CGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQG 266 (483)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~ 266 (483)
..|.+|+.+.+.+.-..--...+..|.+|+.+++... ......++..|..|+.+.+..... .+.+. +..
T Consensus 159 ~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~-----~i~~~-----~~~ 228 (394)
T 4fs7_A 159 ATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLY-----YLGDF-----ALS 228 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCC-----EECTT-----TTT
T ss_pred cccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCce-----Eeehh-----hcc
Confidence 3688999999864311111223457899999988654 333345667888888887765431 12221 234
Q ss_pred CCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCc
Q 011541 267 CKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLAL 346 (483)
Q Consensus 267 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 346 (483)
+..|+.+.+......-. ......|..|+.+.+......- ....+..+..++.+...... +. ......|.+|
T Consensus 229 ~~~l~~i~ip~~~~~i~--~~~f~~~~~l~~~~~~~~~~~i-~~~~F~~~~~l~~~~~~~~~-i~-----~~~F~~~~~L 299 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELG--KSVFYGCTDLESISIQNNKLRI-GGSLFYNCSGLKKVIYGSVI-VP-----EKTFYGCSSL 299 (394)
T ss_dssp TCCCCEEEECTTCCEEC--SSTTTTCSSCCEEEECCTTCEE-CSCTTTTCTTCCEEEECSSE-EC-----TTTTTTCTTC
T ss_pred cCCCceEEECCCceecc--cccccccccceeEEcCCCccee-eccccccccccceeccCcee-ec-----cccccccccc
Confidence 56788888754321100 0122357788888876543110 01234567788877765432 22 1234567788
Q ss_pred cEEecccc-ccccHHHHHHHHhcCccccEEEccCC-CCCCHHHHHHHhcCCCCcEEEecCC-CCCCHHHHHHHHhcCccc
Q 011541 347 ERLHLQKC-QLRDKKGVRALFRVCEAVRELVFQDC-WGLDDDIFRFADVFRRAKFLSLEGC-SLVTTEGLESVILSWTDL 423 (483)
Q Consensus 347 ~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~d~~~~~~~~~~~L~~L~l~~~-~~lt~~~l~~l~~~~~~L 423 (483)
+.+.+... ..+++. .+..|.+|+++.|... ..+.+ .....|.+|+.+.|... ..+.+ ..+..|++|
T Consensus 300 ~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~---~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L 368 (394)
T 4fs7_A 300 TEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGK---RSFRGCTSLSNINFPLSLRKIGA----NAFQGCINL 368 (394)
T ss_dssp CEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECT---TTTTTCTTCCEECCCTTCCEECT----TTBTTCTTC
T ss_pred cccccccccceechh----hhcCCCCCCEEEeCCcccEEhH---HhccCCCCCCEEEECccccEehH----HHhhCCCCC
Confidence 88877542 223322 2456888888888542 11222 23457888999888643 12222 224578899
Q ss_pred ceeeeecCCCCCccchHHHHhhhcccCcEEE
Q 011541 424 QSLRVVSCKNIKDGEVSPALSTLFSVLKELK 454 (483)
Q Consensus 424 ~~L~l~~c~~i~~~~v~~~l~~~~~~L~~L~ 454 (483)
+.+.+... ++. +. .-...|++|+.++
T Consensus 369 ~~i~lp~~--~~~--~~-~~F~~c~~L~~IK 394 (394)
T 4fs7_A 369 KKVELPKR--LEQ--YR-YDFEDTTKFKWIK 394 (394)
T ss_dssp CEEEEEGG--GGG--GG-GGBCTTCEEEEEC
T ss_pred CEEEECCC--CEE--hh-heecCCCCCcEEC
Confidence 99988753 222 11 1234567776653
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.82 E-value=0.037 Score=53.66 Aligned_cols=165 Identities=13% Similarity=0.176 Sum_probs=81.0
Q ss_pred cCCCccEEEEcCCChHHHHHHHHhCCCCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcC
Q 011541 189 GCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGC 267 (483)
Q Consensus 189 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~ 267 (483)
.|..|+.+.+..... .+...+..+.+|+.+.+... .......+..+.+|+.+.+..... .+.... ...|
T Consensus 206 ~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-----~i~~~~----F~~~ 275 (394)
T 4fs7_A 206 ECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-----RIGGSL----FYNC 275 (394)
T ss_dssp TCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-----EECSCT----TTTC
T ss_pred cccccceeecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc-----eeeccc----cccc
Confidence 455666655543210 00111223566777776543 222334455677777777764431 111111 2345
Q ss_pred CCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc--CcHHHHHHhhcCCCCcEEEeccC-CCCCCCCChHHHhcCCC
Q 011541 268 KRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR--MDDGWLAALSYCENLKTLRFVSC-KKIDPSPGPDEYLGSCL 344 (483)
Q Consensus 268 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~~~ 344 (483)
..|+.+......... .....|.+|+.+.+.+.. ++ ..++..|.+|+.+.+... ..+. .....+|.
T Consensus 276 ~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~~i~~I~---~~aF~~c~~L~~i~lp~~v~~I~-----~~aF~~c~ 343 (394)
T 4fs7_A 276 SGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLDSVKFIG---EEAFESCTSLVSIDLPYLVEEIG-----KRSFRGCT 343 (394)
T ss_dssp TTCCEEEECSSEECT----TTTTTCTTCCEEEECTTCCEEC---TTTTTTCTTCCEECCCTTCCEEC-----TTTTTTCT
T ss_pred cccceeccCceeecc----ccccccccccccccccccceec---hhhhcCCCCCCEEEeCCcccEEh-----HHhccCCC
Confidence 666666554332111 112346667777765432 11 124556777777777431 1121 12345677
Q ss_pred CccEEecccc-ccccHHHHHHHHhcCccccEEEccC
Q 011541 345 ALERLHLQKC-QLRDKKGVRALFRVCEAVRELVFQD 379 (483)
Q Consensus 345 ~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 379 (483)
+|+.+.+... ..++.. .+.+|.+|+++.+..
T Consensus 344 ~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGAN----AFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTTCCEECTT----TBTTCTTCCEEEEEG
T ss_pred CCCEEEECccccEehHH----HhhCCCCCCEEEECC
Confidence 7777777542 223322 245677788777754
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.27 E-value=0.067 Score=51.83 Aligned_cols=123 Identities=15% Similarity=0.290 Sum_probs=67.7
Q ss_pred HHhCCCCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCC-CChHHHHH
Q 011541 210 AEECLTLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCE-GSFDGIKA 287 (483)
Q Consensus 210 ~~~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~ 287 (483)
+..|..|+.+.+... ......++..|.+|+.+.+..... .+.+.. ..+|.+|+++.|...- .+.+ .
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~-----~I~~~a----F~~c~~L~~i~lp~~v~~I~~---~ 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRIT-----ELPESV----FAGCISLKSIDIPEGITQILD---D 328 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-----EECTTT----TTTCTTCCEEECCTTCCEECT---T
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCccc-----ccCcee----ecCCCCcCEEEeCCcccEehH---h
Confidence 346788888887543 333345566788888888764321 122222 3467888888885431 1111 1
Q ss_pred HHHcCcCCCeeeecccc--CcHHHHHHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccc
Q 011541 288 IGQCCQMLEELTFSDHR--MDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQK 353 (483)
Q Consensus 288 l~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 353 (483)
....|.+|+++.+.... +++ .++.+|++|+.+.+.+... .......+.+|+.+.+..
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~~---~aF~~C~~L~~i~~~~~~~------~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIPE---SAFSNCTALNNIEYSGSRS------QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCCG---GGGTTCTTCCEEEESSCHH------HHHTCBCCCCC-------
T ss_pred HhhCCCCCCEEEECcccCEEhH---hHhhCCCCCCEEEECCcee------ehhhhhccCCCCEEEeCC
Confidence 23467888888886542 222 3567888999988865321 112345577788777653
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.82 E-value=0.1 Score=50.06 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=76.1
Q ss_pred CCCCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC-ChHHHHHHHH
Q 011541 213 CLTLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG-SFDGIKAIGQ 290 (483)
Q Consensus 213 ~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~l~~l~~ 290 (483)
+..+..+.+... ..........+.+|+.+.+..... .+.+.. ..+|..|+.+.+...-. ..+ ....
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~-----~i~~~~----f~~~~~L~~i~lp~~v~~I~~---~aF~ 260 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVT-----TLGDGA----FYGMKALDEIAIPKNVTSIGS---FLLQ 260 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCC-----EECTTT----TTTCSSCCEEEECTTCCEECT---TTTT
T ss_pred cccccccccccceeEEeecccccccccceeeecccee-----EEcccc----ccCCccceEEEcCCCccEeCc---cccc
Confidence 445555555433 222234445667777777654321 111111 23567777777754311 111 1223
Q ss_pred cCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEeccCC--CCCCCCChHHHhcCCCCccEEeccc-cccccHHHHHHHHh
Q 011541 291 CCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCK--KIDPSPGPDEYLGSCLALERLHLQK-CQLRDKKGVRALFR 367 (483)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~l~~l~~ 367 (483)
.|.+|+.+.+...... ....++..|++|+.+.+.... .+. ......|.+|+.+.|.. ...+++. .+.
T Consensus 261 ~~~~l~~i~l~~~i~~-i~~~aF~~c~~L~~i~l~~~~i~~I~-----~~aF~~c~~L~~i~lp~~l~~I~~~----aF~ 330 (379)
T 4h09_A 261 NCTALKTLNFYAKVKT-VPYLLCSGCSNLTKVVMDNSAIETLE-----PRVFMDCVKLSSVTLPTALKTIQVY----AFK 330 (379)
T ss_dssp TCTTCCEEEECCCCSE-ECTTTTTTCTTCCEEEECCTTCCEEC-----TTTTTTCTTCCEEECCTTCCEECTT----TTT
T ss_pred eeehhcccccccccee-ccccccccccccccccccccccceeh-----hhhhcCCCCCCEEEcCccccEEHHH----Hhh
Confidence 4667777777654211 011245678888888885432 222 22356788888888853 2334332 245
Q ss_pred cCccccEEEccC
Q 011541 368 VCEAVRELVFQD 379 (483)
Q Consensus 368 ~~~~L~~L~L~~ 379 (483)
+|.+|+++.+..
T Consensus 331 ~C~~L~~i~ip~ 342 (379)
T 4h09_A 331 NCKALSTISYPK 342 (379)
T ss_dssp TCTTCCCCCCCT
T ss_pred CCCCCCEEEECC
Confidence 688888887754
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.87 E-value=0.35 Score=46.65 Aligned_cols=123 Identities=18% Similarity=0.312 Sum_probs=76.1
Q ss_pred hcCCCccEEEEcCC-ChHHHHHHHHhCCCCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHh
Q 011541 188 CGCPNLRRLVVVGA-SEFGLLSVAEECLTLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQ 265 (483)
Q Consensus 188 ~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~ 265 (483)
..|.+|+++.+... ...+ ...+.+|+.|+++.+... ......++..|.+|+.+.|..... .+.+.. ..
T Consensus 262 ~~c~~L~~i~lp~~~~~I~-~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~-----~I~~~a----F~ 331 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIG-TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGIT-----QILDDA----FA 331 (394)
T ss_dssp TTCSSCCEEECCTTCCEEC-TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-----EECTTT----TT
T ss_pred eecccccEEecccccceec-CcccccccccccccCCCcccccCceeecCCCCcCEEEeCCccc-----EehHhH----hh
Confidence 36889999998642 2111 123457899999999654 344456677899999999975421 233332 35
Q ss_pred cCCCCcEEEeeCCC-CChHHHHHHHHcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEecc
Q 011541 266 GCKRLVKLELSGCE-GSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVS 326 (483)
Q Consensus 266 ~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 326 (483)
+|.+|+++.+...- ...+ .....|.+|+.+.+.+.... ...+..+.+|+.+.+..
T Consensus 332 ~C~~L~~i~ip~sv~~I~~---~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPE---SAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCTTCCEEEECTTCCBCCG---GGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-------
T ss_pred CCCCCCEEEECcccCEEhH---hHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCC
Confidence 79999999996432 1222 22457899999999876422 23566788999988753
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.88 E-value=0.28 Score=46.97 Aligned_cols=127 Identities=15% Similarity=0.199 Sum_probs=69.1
Q ss_pred HhCCCCCEEEeecC-CccchHHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHH
Q 011541 211 EECLTLQEFELHKC-GDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIG 289 (483)
Q Consensus 211 ~~~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~ 289 (483)
..|.+|+.+.+... .......+..+.+|+.+.+..... .+.+. ....|.+|+.+.+...-..- + ....
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~-----~I~~~----aF~~~~~l~~i~l~~~i~~i-~-~~aF 282 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVT-----SIGSF----LLQNCTALKTLNFYAKVKTV-P-YLLC 282 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCC-----EECTT----TTTTCTTCCEEEECCCCSEE-C-TTTT
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCCcc-----EeCcc----ccceeehhccccccccceec-c-cccc
Confidence 34667777776543 233334556677777777764321 12221 12356777777774431100 0 1123
Q ss_pred HcCcCCCeeeeccccCcHHHHHHhhcCCCCcEEEecc-CCCCCCCCChHHHhcCCCCccEEeccc
Q 011541 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVS-CKKIDPSPGPDEYLGSCLALERLHLQK 353 (483)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~ 353 (483)
..|.+|+.+.+.+..+..-...++..|.+|+.+.|.. ...+. .....+|.+|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~-----~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQ-----VYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC-----TTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEH-----HHHhhCCCCCCEEEECC
Confidence 4577788888765432221123567788888888843 22232 22356788888887753
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=41.49 E-value=9.7 Score=29.87 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=20.0
Q ss_pred CCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccc
Q 011541 318 NLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLR 357 (483)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 357 (483)
+|++|+|+++. ++.- ....+..+++|+.|+|+++...
T Consensus 32 ~l~~L~Ls~N~-l~~l--~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNN-LTAL--PPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSC-CSSC--CTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCc-CCcc--ChhhhhhccccCEEEecCCCee
Confidence 56666666554 3211 1223455666777777766543
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=35.84 E-value=26 Score=27.26 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=10.2
Q ss_pred cCCCCcEEEeeCCCCC
Q 011541 266 GCKRLVKLELSGCEGS 281 (483)
Q Consensus 266 ~~~~L~~L~L~~~~~~ 281 (483)
.+++|+.|+|.++.+.
T Consensus 53 ~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 53 ALPALRTAHLGANPWR 68 (130)
T ss_dssp GCTTCCEEECCSSCCB
T ss_pred hccccCEEEecCCCee
Confidence 4566777777766553
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.46 E-value=36 Score=25.12 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=13.6
Q ss_pred CCCCCEEEeecC-CccchHHhhcCCCCCEEEee
Q 011541 213 CLTLQEFELHKC-GDNVLRGIAACENLQILKLV 244 (483)
Q Consensus 213 ~~~L~~L~l~~~-~~~~~~~i~~~~~L~~L~L~ 244 (483)
|.+|+++.|-.. ......++..|.+|+.+.+.
T Consensus 19 c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 19 NTVIREITVQPNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTCCCEEECTTSSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCcEEEcCCchheEcHHHHhccCCccEEEEc
Confidence 444444444322 22233334444455554444
Done!